Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	G	C	tCw	wGa	tC	Ga	tC_mutation	tC_mutation_to_G	tC_mutation_to_T	APOBEC_mutation	APOBEC_mutation_to_G	APOBEC_mutation_to_T	"CONTEXT(+/-20)"	g_counts	c_counts	tcw_counts	wga_counts	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germlinemaffrequency	IGV	newbase	end	tum_allele1	tum_allele2	start	effect_idx	newbase_idx	pat_idx	is_coding	is_flank	is_indel	is_ins	is_del	is_missense	is_nonsense	is_splice	is_silent	gene_idx	context_and_effect	context65	categ_idx	trackpos	categ	gene	chr	pos	type	classification	ref_allele	patient	DistBetween_Mutations	Distance_to_LT_end	Distance_to_RT_end	Strain_Mutation_ID	Dataset_Mutation_ID	Complex_ID	Complex_Size	StrainCluster_ID	Dataset_Cluster_ID	Distance_Between_Clusters	Cluster_Size_Mutations	Cluster_Size_Complexes	Cluster_Length	Cluster_Coordination	Content_of_non_coordinated_cluster	Cluster_Pvalue
PIK3CD	5293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	9779982	9779982	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccctgtccttctgcaggacTgccccattgcctgggccaac	10	17	1	0	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_005026	exon10	c.T1246C	p.C416R	CAGGACTGCCCCA		149	33	0.22	155	0	0				149	43	0.29				C	9779982	T	C	9779982	3	2	1	1	0	0	0	0	1	0	0	0	11962	1580	55	4	1276	4	PIK3CD	1	9779982	Missense_Mutation	SNP	T	TCGA-2G-AAEW-01A-11D-A42Y-10		9779982	239470639	1	1											
PTPRF	5792	mdanderson.org	37	chr1	44057118	44057118	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggggctcctcacgaccgtGggcagcctgctgcctggcat	15	15	1	0	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_002840	exon9	c.G1425T	p.V475V	GACCGTGGGCAGC		24	2	0.08	28	0	0				116	0	0				T	44057118	G	T	44057118	2	4	1	1	0	0	0	0	0	0	0	1	12852	1335	47	3		3	PTPRF	1	44057118	Silent	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10	34277136	44057118	205193503	2	2											
ARHGAP30	257106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	161018593	161018595	+	In_Frame_Del	DEL	CTC	CTC	-													cttctcatctgtatactcatCtcctcctggttcctccacac					novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	CTC	CTC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	ARHGAP30	NM_001025598	exon12	c.2217_2219del	p.739_740del	ACTCATCTCCTCC		285	65	0.23	202	0	0		105		106	0	0				-	161018595	CTC	-	161018593	7	5	1	1	0	1	0	1	0	0	0	0	876	913	32	0	1091	0	ARHGAP30	1	161018593	In_Frame_Del	DEL	CTC	TCGA-2G-AAEW-01A-11D-A42Y-10	116961475	161018593	88232028	3	3											
TTC13	79573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	231075188	231075188	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatagcatagctataggctGgtttttgttcagttctaagg	11	5	2	0	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_024525	exon8	c.C844A	p.Q282K	TAGGCTGGTTTTT		55	7	0.13	55	0	0				1	0	0				T	231075188	G	T	231075188	3	4	1	1	0	0	0	0	1	0	0	0	16741	1357	47	3	1802	3	TTC13	1	231075188	Missense_Mutation	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10	70056595	231075188	18175433	4	4											
COBLL1	22837	broad.mit.edu	37	chr2	165586537	165586537	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaaatttaatgtggttctGttcagctgacaacagatcga	8	7	2	2	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	COBLL1	NM_014900	exon3	c.C319A	p.Q107K	GGTTCTGTTCAGC		130	3	0.02	129	0	0		122		14	0	0				T	165586537	G	T	165586537	3	4	1	1	0	0	0	0	1	0	0	0	3677	1386	48	3	3229	3	COBLL1	2	165586537	Missense_Mutation	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10		165586537	77612836	5	5											
GMPPA	29926	mdanderson.org	37	chr2	220370469	220370469	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccacccgaccgccaaggtgGccccctcggctgtggtgagc	13	17	0	1	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_205847	exon10	c.G886T	p.A296S	AAGGTGGCCCCCT		46	3	0.07	46	0	0				124	0	0				T	220370469	G	T	220370469	3	4	1	1	0	0	0	0	1	0	0	0	6535	1203	42	2	920	2	GMPPA	2	220370469	Missense_Mutation	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10	54783932	220370469	22828904	6	6											
VGLL4	9686	mdanderson.org	37	chr3	11606281	11606281	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agaggcccacctgctgccgcTcccccggggtcagtgtgggc	15	16	1	1	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_001128219	exon3	c.A485G	p.E162G	TGCCGCTCCCCCG		26	3	0.12	20	0	0				40	0	0				C	11606281	T	C	11606281	3	2	1	1	0	0	0	0	1	0	0	0	17220	1551	54	4	417	4	VGLL4	3	11606281	Missense_Mutation	SNP	T	TCGA-2G-AAEW-01A-11D-A42Y-10		11606281	186416149	7	7											
CCDC14	64770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	123665686	123665686	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggccttgagctctcccaacaAatattttataattctaactt	4	10	2	1	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_022757	exon7	c.T1186A	p.L396M	CCAACAAATATTT		294	51	0.17	252	0	0				117	28	0.24				T	123665686	A	T	123665686	3	4	1	1	0	0	0	0	1	0	0	0	2791	11	1	5	1576	5	CCDC14	3	123665686	Missense_Mutation	SNP	A	TCGA-2G-AAEW-01A-11D-A42Y-10	112059405	123665686	74356744	8	8											
EHHADH	1962	broad.mit.edu	37	chr3	184971758	184971758	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatcgcgttgaccggcgggTttcggaggcggattagcgcc	17	10	0	2	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	EHHADH	NM_001966	exon1	c.A53C	p.N18T	GGCGGGTTTCGGA		150	30	0.2	141	29	0.2056737589		73		24	1	0.04				G	184971758	T	G	184971758	3	3	1	1	0	0	0	0	1	0	0	0	5008	1725	60	4	2146	4	EHHADH	3	184971758	Missense_Mutation	SNP	T	TCGA-2G-AAEW-01A-11D-A42Y-10	61306072	184971758	13050672	9	9											
PTPN13	5783	mdanderson.org	37	chr4	87707089	87707089	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacctgagtattttactgaGgtaacaataatacctaaaca	5	7	0	2	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_080685	exon40	c.G6360T	p.E2120D	TACTGAGGTAACA		44	3	0.07	48	0	0				44	0	0				T	87707089	G	T	87707089	3	4	1	1	0	0	0	0	1	0	0	0	12831	1014	35	3	6514	3	PTPN13	4	87707089	Missense_Mutation	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10		87707089	103447187	10	10											
FAM105A	54491	mdanderson.org	37	chr5	14608915	14608915	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaagtatgtgcaacacccTtttttcagatgccattctgg	9	9	2	1	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_019018	exon7	c.T686C	p.L229P	ACACCCTTTTTTC		49	3	0.06	49	0	0				47	0	0				C	14608915	T	C	14608915	3	2	1	1	0	0	0	0	1	0	0	0	5418	1609	56	4	712	4	FAM105A	5	14608915	Missense_Mutation	SNP	T	TCGA-2G-AAEW-01A-11D-A42Y-10		14608915	166306345	11	11											
PCDHB10	56126	mdanderson.org	37	chr5	140573922	140573922	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacggcgactcgggccagaaCgcctggctgtcgtaccagct	14	14	0	1	rs376773467	bycluster	TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_018930	exon1	c.C1797T	p.N599N	CCAGAACGCCTGG		23	3	0.13	19	0	0				0	0					T	140573922	C	T	140573922	2	4	1	1	0	0	0	0	0	0	0	1	11581	535	19	1		1	PCDHB10	5	140573922	Silent	SNP	C	TCGA-2G-AAEW-01A-11D-A42Y-10	125965007	140573922	40341338	12	12											
SYNPO	11346	mdanderson.org	37	chr5	150028987	150028987	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaatccatgtttactttcGtggagaagcccaaggtgacc	10	10	0	2	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_001166208	exon3	c.G1882T	p.V628L	ACTTTCGTGGAGA		58	3	0.05	77	0	0				33	0	0				T	150028987	G	T	150028987	3	4	1	1	0	0	0	0	1	0	0	0	15512	1145	40	1	1888	1	SYNPO	5	150028987	Missense_Mutation	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10	9455065	150028987	30886273	13	13											
DCDC2	51473	broad.mit.edu	37	chr6	24301981	24301981	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcagagtgattttttctgtGaccatttgtagtacatgatc	8	7	2	4	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	DCDC2	NM_001195610	exon5	c.C519A	p.V173V	TTCTGTGACCATT		171	4	0.02	197	0	0		53		4	0	0				T	24301981	G	T	24301981	2	4	1	1	0	0	0	0	0	0	0	1	4308	1277	45	3		3	DCDC2	6	24301981	Silent	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10		24301981	146813086	14	14											
GPR115	221393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	47678504	47678504	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	accttgtatttcttcttccaActgcagccagccctgtgcta	6	14	2	0	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_153838	exon4	c.A182G	p.N61S	CTTCCAACTGCAG		193	22	0.11	184	0	0				0	0					G	47678504	A	G	47678504	3	3	1	1	0	0	0	0	1	0	0	0	6671	43	2	4	192	4	GPR115	6	47678504	Missense_Mutation	SNP	A	TCGA-2G-AAEW-01A-11D-A42Y-10	23376523	47678504	123436563	15	15											
MCM7	4176	mdanderson.org	37	chr7	99697366	99697366	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccacctgttcccgatgaGccagccgaacctcaagtggg	12	14	1	1	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_005916	exon3	c.C122A	p.A41D	CGATGAGCCAGCC		53	3	0.06	45	0	0				1290	0	0				T	99697366	G	T	99697366	3	4	1	1	0	0	0	0	1	0	0	0	9441	971	34	2	2089	2	MCM7	7	99697366	Missense_Mutation	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10		99697366	59441297	16	16											
LRCH4	4034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	100173407	100173407	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagggcactgagttttggcTggggtgggtgaaagaagaaa	18	3	0	5	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_002319	exon18	c.1777-2A>G	.	TTTGGCTGGGGTG		171	26	0.15	156	0	0				2	0	0				C	100173407	T	C	100173407	5	2	1	1	0	0	0	0	0	0	1	0	8979	1594	55	4	284	4	LRCH4	7	100173407	Splice_Site	SNP	T	TCGA-2G-AAEW-01A-11D-A42Y-10	476041	100173407	58965256	17	17											
SLC24A2	25769	broad.mit.edu	37	chr9	19786692	19786692	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtatctgtctcagaaaagGcactgattgaaaatgagaca	10	6	2	4	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	SLC24A2,NS,carcinoma,-1,1	SLC24A2	NM_001193288	exon1	c.C173A	p.A58D	GAAAAGGCACTGA		140	4	0.03	118	0	0		93	1	0	0					T	19786692	G	T	19786692	3	4	1	1	0	0	0	0	1	0	0	0	14520	1203	42	2	1852	2	SLC24A2	9	19786692	Missense_Mutation	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10		19786692	121426739	18	18											
ABTB2	25841	mdanderson.org	37	chr11	34184247	34184247	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctcgctgccactgccctgGctcgacgcatcactttcctc	7	20	1	0	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_145804	exon10	c.C2094T	p.S698S	GCCCTGGCTCGAC		45	3	0.07	41	0	0				9	0	0				A	34184247	G	A	34184247	2	1	1	1	0	0	0	0	0	0	0	1	103	1194	42	2		2	ABTB2	11	34184247	Silent	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10		34184247	100822269	19	19											
OR4A16	81327	hgsc.bcm.edu	37	chr11	55110715	55110715	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttacagaatttgtcctcctGggcctcactcaagatcctga	8	12	2	3	rs77981146	bycluster;byfrequency;by1000genomes	TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	OR4A16,NS,lymphoid_neoplasm,0,1	OR4A16	NM_001005274	exon1	c.G39A	p.L13L	CCTCCTGGGCCTC		35	4	0.11	45	0	0	0.006	0	1	0	0					A	55110715	G	A	55110715	2	1	1	1	0	0	0	0	0	0	0	1	11088	1335	47	3		3	OR4A16	11	55110715	Silent	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10	20926468	55110715	79895801	20	20			1	1		2	2	25	G		4.03135e-05
OR4A16	81327	hgsc.bcm.edu	37	chr11	55110739	55110739	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcactcaagatcctgatgtGaaaaaaacattatttgtcat	5	8	3	3	rs78513473	bycluster;byfrequency	TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	OR4A16,NS,carcinoma,0,1	OR4A16	NM_001005274	exon1	c.G63A	p.V21V	TGATGTGAAAAAA		52	5	0.1	44	0	0	0.002	0	1	0	0					A	55110739	G	A	55110739	2	1	1	1	0	0	0	0	0	0	0	1	11088	1277	45	3		3	OR4A16	11	55110739	Silent	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10	24	55110739	79895777	21	21			1	1		2	2	25	G		4.03135e-05
FOLR2	2350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	71932007	71932007	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtacaactttaactgggacCactgcggcaagatggagccc	11	11	0	1	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_001113535	exon3	c.C244G	p.H82D	TGGGACCACTGCG		96	14	0.15	88	0	0				49	0	0				G	71932007	C	G	71932007	3	3	1	1	0	0	0	0	1	0	0	0	6014	594	21	5	250	5	FOLR2	11	71932007	Missense_Mutation	SNP	C	TCGA-2G-AAEW-01A-11D-A42Y-10	16821268	71932007	63074509	22	22											
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	73070882	73070882	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcctctctccctctaggggCatcccaagccaccaatcggg	8	17	2	0	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_014786	exon10	c.C4091T	p.A1364V	TAGGGGCATCCCA		107	24	0.22	115	0	0				38	5	0.13				T	73070882	C	T	73070882	3	4	1	1	0	0	0	0	1	0	0	0	897	710	25	2	4129	2	ARHGEF17	11	73070882	Missense_Mutation	SNP	C	TCGA-2G-AAEW-01A-11D-A42Y-10	1138875	73070882	61935634	23	23											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529	bycluster	TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	KRAS_ENST00000256078,NS,adenocarcinoma,0,25136	KRAS_ENST00000256078	NM_004985	exon2	c.G35T	p.G12V	ACGCCACCAGCTC		228	51	0.22	152	0	0		0	25136	49	21	0.43				A	25398284	C	A	25398284	3	1	1	1	0	0	0	0	1	0	0	0	8480	507	18	3	671	3	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-2G-AAEW-01A-11D-A42Y-10		25398284	108453611	24	24											
MRPL42	28977	mdanderson.org	37	chr12	93881369	93881369	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttgaacaccttgaggaaGgacctatgatagaacaactt	9	7	0	4	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_014050	exon5	c.G316T	p.G106X	GAGGAAGGACCTA		50	3	0.06	38	0	0				534	0	0				T	93881369	G	T	93881369	4	4	1	1	0	0	0	0	0	1	0	0	9854	1001	35	3	354	3	MRPL42	12	93881369	Nonsense_Mutation	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10	68483085	93881369	39970526	25	25											
BTBD11	121551	broad.mit.edu	37	chr12	108010914	108010914	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	aaggctcagtggagcatggcGaggagaactactcggaaaca	14	8	1	1	rs147351765	alternate_allele	TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	BTBD11,scalp,malignant_melanoma,0,3	BTBD11	NM_001018072	exon8	c.G2050T	p.E684X	CATGGCGAGGAGA		78	3	0.04	79	0	0		122	3	5	0	0				T	108010914	G	T	108010914	4	4	1	1	0	0	0	0	0	1	0	0	1541	1059	37	1	2185	1	BTBD11	12	108010914	Nonsense_Mutation	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10	14129545	108010914	25840981	26	26											
MYO16	23026	hgsc.bcm.edu	37	chr13	109318410	109318410	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaggaagggttcctgaaaAggctgaagcatgcgaagaat	14	6	0	3	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	MYO16,NS,carcinoma,-2,1	MYO16	NM_001198950	exon2	c.A205G	p.R69G	CTGAAAAGGCTGA		65	3	0.05	78	0	0		-2	1	1	0	0				G	109318410	A	G	109318410	3	3	1	1	0	0	0	0	1	0	0	0	10111	63	3	4	141	4	MYO16	13	109318410	Missense_Mutation	SNP	A	TCGA-2G-AAEW-01A-11D-A42Y-10		109318410	5851468	27	27											
ZFP36L1	677	mdanderson.org	37	chr14	69257094	69257094	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggtggaacttggagctgGgcagggtgactgagtgcctc	17	8	1	2	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_001244701	exon3	c.C380A	p.P127H	GAGCTGGGCAGGG		35	3	0.09	31	0	0				138	0	0				T	69257094	G	T	69257094	3	4	1	1	0	0	0	0	1	0	0	0	17703	1232	43	3	847	3	ZFP36L1	14	69257094	Missense_Mutation	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10		69257094	38092446	28	28											
BATF	10538	mdanderson.org	37	chr14	75991478	75991478	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagggagaaaaatcgtattGccgcccagaagagccgacag	14	9	0	3	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_006399	exon2	c.G115T	p.A39S	CGTATTGCCGCCC		52	3	0.06	48	0	0				88	0	0				T	75991478	G	T	75991478	3	4	1	1	0	0	0	0	1	0	0	0	1323	1319	46	2	121	2	BATF	14	75991478	Missense_Mutation	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10	6734384	75991478	31358062	29	29											
SLC12A6	9990	mdanderson.org	37	chr15	34544565	34544565	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtcttgatgaaagggtgCggttacccagcatgcagacc	13	9	1	3	rs375887656		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	SLC12A6_ENST00000558589,bladder,carcinoma,0,6	SLC12A6_ENST00000558589	NM_133647	exon9	c.G1139A	p.R380H	AGGGTGCGGTTAC		125	5	0.04	91	0	0		0	6	95	0	0				T	34544565	C	T	34544565	3	4	1	1	0	0	0	0	1	0	0	0	14441	768	27	1	2381	1	SLC12A6	15	34544565	Missense_Mutation	SNP	C	TCGA-2G-AAEW-01A-11D-A42Y-10		34544565	67986827	30	30											
FAM98B	283742	broad.mit.edu	37	chr15	38776809	38776809	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagatccatatggaggaggTggtggtggtggtggtggtgg	23	2	0	1	rs374461368		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	FAM98B	NM_173611	exon8	c.T1251A	p.G417G	AGGAGGTGGTGGT		94	5	0.05	93	1	0.0107526882		53		1	0	0				A	38776809	T	A	38776809	2	1	1	1	0	0	0	0	0	0	0	1	5689	1683	59	5		5	FAM98B	15	38776809	Silent	SNP	T	TCGA-2G-AAEW-01A-11D-A42Y-10	4232244	38776809	63754583	31	31											
TLE3	7090	mdanderson.org	37	chr15	70346959	70346959	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atggtgagcgtgctggcctcGccgcccacgatgagcgtgcg	16	13	0	2	rs367926967		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_005078	exon16	c.C1653T	p.G551G	GGCCTCGCCGCCC		45	3	0.07	56	0	0				170	0	0				A	70346959	G	A	70346959	2	1	1	1	0	0	0	0	0	0	0	1	15999	1074	38	1		1	TLE3	15	70346959	Silent	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10	31570150	70346959	32184433	32	32											
CREBBP	1387	mdanderson.org	37	chr16	3820600	3820600	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaggctgggcgtgcacagGcgtcggctgttgctgcgatg	19	9	0	0	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_004380	exon14	c.C2851A	p.P951T	GCACAGGCGTCGG		51	3	0.06	45	0	0				144	0	0				T	3820600	G	T	3820600	3	4	1	1	0	0	0	0	1	0	0	0	3884	1203	42	2	4549	2	CREBBP	16	3820600	Missense_Mutation	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10		3820600	86534153	33	33											
SOCS1	8651	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr16	11348860	11348860	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggggcccccagcatgcggCgcggcgccgccacgtagtgc	17	17	0	0	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_003745	exon2	c.G476T	p.R159L	ATGCGGCGCGGCG		31	5	0.16	10	0	0				42	4	0.1				A	11348860	C	A	11348860	3	1	1	1	0	0	0	0	1	0	0	0	14966	768	27	1	163	1	SOCS1	16	11348860	Missense_Mutation	SNP	C	TCGA-2G-AAEW-01A-11D-A42Y-10	7528260	11348860	79005893	34	34											
ADAD2	161931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	84227812	84227812	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatggagtcacgcatccctGctgtggaggagttgggtgag	16	7	1	1	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_139174	exon2	c.G619A	p.A207T	ATCCCTGCTGTGG		78	12	0.15	73	0	0				0	0					A	84227812	G	A	84227812	3	1	1	1	0	0	0	0	1	0	0	0	231	1319	46	2	625	2	ADAD2	16	84227812	Missense_Mutation	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10	72878952	84227812	6126941	35	35											
KLHL11	55175	broad.mit.edu	37	chr17	40010660	40010660	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atctcgaagaatctttggtgCcgattccaagttgtgccatt	9	9	2	1	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	KLHL11,colon,carcinoma,+2,1	KLHL11	NM_018143	exon2	c.G1459A	p.A487T	TTGGTGCCGATTC		164	4	0.02	125	0	0		44	1	44	0	0				T	40010660	C	T	40010660	3	4	1	1	0	0	0	0	1	0	0	0	8409	739	26	2	671	2	KLHL11	17	40010660	Missense_Mutation	SNP	C	TCGA-2G-AAEW-01A-11D-A42Y-10		40010660	41184550	36	36											
TMUB2	79089	broad.mit.edu	37	chr17	42266738	42266738	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggaggctggagctgggggTggtgttgagcccagccttga	21	7	0	2	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	TMUB2	NM_001076674	exon3	c.T384G	p.G128G	TGGGGGTGGTGTT		56	13	0.23	51	10	0.1960784314		29		75	1	0.01				G	42266738	T	G	42266738	2	3	1	1	0	0	0	0	0	0	0	1	16324	1683	59	4		4	TMUB2	17	42266738	Silent	SNP	T	TCGA-2G-AAEW-01A-11D-A42Y-10	2256078	42266738	38928472	37	37											
LLGL2	3993	mdanderson.org	37	chr17	73564574	73564574	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcctttgacgacccctatGccctggtggtgctggctgag	13	13	0	2	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_004524	exon11	c.G1054T	p.A352S	CCCTATGCCCTGG		50	3	0.06	41	0	0				74	0	0				T	73564574	G	T	73564574	3	4	1	1	0	0	0	0	1	0	0	0	8874	1319	46	2	1127	2	LLGL2	17	73564574	Missense_Mutation	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10	31297836	73564574	7630636	38	38											
TBCD	6904	broad.mit.edu	37	chr17	80851439	80851439	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagggcactttccctcatgGtattgatattttgaccacag	8	9	1	2	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	TBCD	NM_005993	exon17	c.G1580T	p.G527V	CTCATGGTATTGA		338	8	0.02	376	1	0.0026595745		94		490	0	0				T	80851439	G	T	80851439	3	4	1	1	0	0	0	0	1	0	0	0	15692	1261	44	3	1646	3	TBCD	17	80851439	Missense_Mutation	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10	7286865	80851439	343771	39	39											
FAM108A1	81926	hgsc.bcm.edu	37	chr19	1881263	1881263	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcacgcagcgaacatacatGcaggagacgcggttgccgcg	15	12	0	1	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	FAM108A1,NS,carcinoma,0,2	FAM108A1	NM_031213	exon2	c.C303T	p.C101C	ATACATGCAGGAG		57	3	0.05	50	0	0		0	2	296	0	0				A	1881263	G	A	1881263	2	1	1	1	0	0	0	0	0	0	0	1	5422	1311	46	2		2	FAM108A1	19	1881263	Silent	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10		1881263	57247720	40	40											
FAM108A1	81926	broad.mit.edu;mdanderson.org	37	chr19	1881347	1881347	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggctgtactggaagtcggcAcgctccgtcaggtgcagctt	14	11	1	0	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	FAM108A1,NS,carcinoma,0,1	FAM108A1	NM_031213	exon2	c.T219C	p.R73R	GTCGGCACGCTCC		21	3	0.14	20	0	0		29	1	137	0	0				G	1881347	A	G	1881347	2	3	1	1	0	0	0	0	0	0	0	1	5422	146	6	4		4	FAM108A1	19	1881347	Silent	SNP	A	TCGA-2G-AAEW-01A-11D-A42Y-10	84	1881347	57247636	41	41											
ZNF799	90576	ucsc.edu	37	chr19	12501855	12501855	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atcaataaaggctttcccacAtttgcatttatagggtttct	6	8	2	0	rs201077492		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	ZNF799	NM_001080821	exon4	c.T1357C	p.C453R	TCCCACATTTGCA		160	5	0.03	140	4	0.0285714286		111		58	9	0.16	rescued with RNA-seq			G	12501855	A	G	12501855	3	3	1	1	0	0	0	0	1	0	0	0	18214	217	8	4	578	4	ZNF799	19	12501855	Missense_Mutation	SNP	A	TCGA-2G-AAEW-01A-11D-A42Y-10	10620508	12501855	46627128	42	42											
RHPN2	85415	hgsc.bcm.edu	37	chr19	33493842	33493842	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	attttgacgagcacgctgagCatggcagggctcatgtcgta	13	9	1	2	rs137892450	bycluster;byfrequency	TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	RHPN2,NS,neuroblastoma,0,1	RHPN2	NM_033103	exon8	c.G825T	p.M275I	GCTGAGCATGGCA		68	3	0.04	43	1	0.023255814	0	0	1	11	0	0				A	33493842	C	A	33493842	3	1	1	1	0	0	0	0	1	0	0	0	13400	710	25	2	1267	2	RHPN2	19	33493842	Missense_Mutation	SNP	C	TCGA-2G-AAEW-01A-11D-A42Y-10	20991987	33493842	25635141	43	43											
NUMBL	9253	broad.mit.edu	37	chr19	41173907	41173907	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgttgctgttgCtgctgctgctgctgctgggc	15	11	0	0	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	NUMBL	NM_004756	exon10	c.G1296A	p.Q432Q	CTGTTGCTGCTGC		55	3	0.05	41	0	0		49		69	0	0				T	41173907	C	T	41173907	2	4	1	1	0	0	0	0	0	0	0	1	10799	796	28	2		2	NUMBL	19	41173907	Silent	SNP	C	TCGA-2G-AAEW-01A-11D-A42Y-10	7680065	41173907	17955076	44	44											
PIGT	51604	broad.mit.edu	37	chr20	44053178	44053178	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcccagcatggtagcagcCaagccagtggactgggaaga	15	10	0	1	rs79813306	bycluster	TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	PIGT,NS,carcinoma,0,1	PIGT	NM_015937	exon11	c.C1443A	p.A481A	AGCAGCCAAGCCA		122	8	0.07	103	4	0.0388349515		85	1	371	6	0.02				A	44053178	C	A	44053178	2	1	1	1	0	0	0	0	0	0	0	1	11946	581	21	3		3	PIGT	20	44053178	Silent	SNP	C	TCGA-2G-AAEW-01A-11D-A42Y-10		44053178	18972342	45	45											
NCOA3	8202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	46264898	46264898	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	caatgtgtcagtcaaatagcAgagatcacctcagtgacaaa	8	9	4	2	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_001174088	exon12	c.A1798C	p.R600R	AATAGCAGAGATC		119	18	0.15	117	0	0				67	15	0.22				C	46264898	A	C	46264898	2	2	1	1	0	0	0	0	0	0	0	1	10276	180	7	4		4	NCOA3	20	46264898	Silent	SNP	A	TCGA-2G-AAEW-01A-11D-A42Y-10	2211720	46264898	16760622	46	46											
PCK1	5105	broad.mit.edu;mdanderson.org	37	chr20	56138710	56138710	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aagaccaacctggccatgatGaaccccagcctccccgggtg	10	16	0	3	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	PCK1	NM_002591	exon6	c.G888T	p.M296I	CATGATGAACCCC		65	5	0.08	71	0	0		95		0	0					T	56138710	G	T	56138710	3	4	1	1	0	0	0	0	1	0	0	0	11627	1290	45	3	906	3	PCK1	20	56138710	Missense_Mutation	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10	9873812	56138710	6886810	47	47											
ZNF512B	57473	mdanderson.org	37	chr20	62593699	62593699	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctagcagctgggggttcagcGtggggagccctggtcgagtg	19	9	1	0	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_020713	exon14	c.C2192T	p.T731M	TTCAGCGTGGGGA		47	3	0.06	46	0	0				40	0	0				A	62593699	G	A	62593699	3	1	1	1	0	0	0	0	1	0	0	0	18013	1145	40	1	502	1	ZNF512B	20	62593699	Missense_Mutation	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10	6454989	62593699	431821	48	48											
BAGE	85319	broad.mit.edu	37	chr21	11058605	11058605	+	RNA	DEL	T	T	-													tttgaaacaaaacctaaagaTttttttttaaagcaaatagt					novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	.	.	.	.	TAAAGATTTTTTT		6	2	0.33	14	0	0				0	0					-	11058605	T	-	11058605	6	5	1	0	1	1	0	1	0	0	0	0	1289	1508	52	0		0	BAGE	21	11058605	RNA	DEL	T	TCGA-2G-AAEW-01A-11D-A42Y-10		11058605	37071290	49	49											
THAP7	80764	hgsc.bcm.edu;broad.mit.edu	37	chr22	21354471	21354471	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcatatacgctgagggggAgactggccgtggttcgagag	17	8	0	3	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	THAP7,trunk,malignant_melanoma,+1,1	THAP7	NM_030573	exon4	c.T628C	p.S210P	AGGGGGAGACTGG		70	5	0.07	59	1	0.0169491525		1	1	121	0	0				G	21354471	A	G	21354471	3	3	1	1	0	0	0	0	1	0	0	0	15908	304	11	4	305	4	THAP7	22	21354471	Missense_Mutation	SNP	A	TCGA-2G-AAEW-01A-11D-A42Y-10		21354471	29950095	50	50											
TYMP	1890	mdanderson.org	37	chr22	50966985	50966985	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatccaggaatagactccaGcttatccaaggtgcctcctg	9	12	0	1	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_001113756	exon3	c.C472A	p.L158M	ACTCCAGCTTATC		53	3	0.06	62	0	0				617	0	0				T	50966985	G	T	50966985	3	4	1	1	0	0	0	0	1	0	0	0	16872	962	34	2	1004	2	TYMP	22	50966985	Missense_Mutation	SNP	G	TCGA-2G-AAEW-01A-11D-A42Y-10	29612514	50966985	337581	51	51											
IL3RA	3563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	1501338	1501338	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agtgtctggtgactgaagtaCaggtcgtgcagaaaacttga	13	6	1	4	novel		TCGA-2G-AAEW-01A-11D-A42Y-10	TCGA-2G-AAEW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cef64460-0ab5-4867-9675-da4a7d84310e	5f232b73-5281-4be0-9679-0920bcb4dd29	.	.	NM_002183	exon12	c.C1117G	p.Q373E	GAAGTACAGGTCG		481	74	0.15	498	0	0				117	2	0.02				G	1501338	C	G	1501338	3	3	1	1	0	0	0	0	1	0	0	0	7738	479	17	5	1159	5	IL3RA	23	1501338	Missense_Mutation	SNP	C	TCGA-2G-AAEW-01A-11D-A42Y-10		1501338	153769222	52	52											
NBPF1	55672	broad.mit.edu	37	chr1	16918395	16918395	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagttgagttacaaaacatTtctctttgaggtttctgaac	7	8	2	3	rs60769486		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	.	.	.	.	AAACATTTCTCTT		104	5	0.05	103	1	0.0097087379				3	0	0				C	16918395	T	C	16918395	3	2	2	1	0	0	0	0	1	0	0	0	10239	1841	64	4	3394	4	NBPF1	1	16918395	Missense_Mutation	SNP	T	TCGA-2G-AAEX-01A-11D-A42Y-10		16918395	232332226	1	53											
HIVEP3	59269	broad.mit.edu	37	chr1	42048123	42048123	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttccctgattctgaaccGgaccctggcttgggagtcct	10	14	1	2	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	HIVEP3	NM_024503	exon4	c.C2346A	p.S782S	TGAACCGGACCCT		149	4	0.03	127	0	0		235		2	0	0				T	42048123	G	T	42048123	2	4	2	1	0	0	0	0	0	0	0	1	7228	1103	39	1		1	HIVEP3	1	42048123	Silent	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	25129728	42048123	207202498	2	54											
TMEM48	55706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	54269668	54269668	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgagaaagcaacatcaggtcCtgcaaggctaaatactaaca	8	9	1	1	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_018087	exon10	c.G999C	p.Q333H	CAGGTCCTGCAAG		283	55	0.19	270	0	0				53	18	0.34				G	54269668	C	G	54269668	3	3	2	1	0	0	0	0	1	0	0	0	16231	680	24	5	1061	5	TMEM48	1	54269668	Missense_Mutation	SNP	C	TCGA-2G-AAEX-01A-11D-A42Y-10	12221545	54269668	194980953	3	55											
SEC22B	9554	broad.mit.edu	37	chr1	145109259	145109260	+	RNA	INS	-	-	A													atgccactgcactccagcccINSgggggcagagcgagactccg					rs11386827	bycluster;by1000genomes	TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	.	.	.	.	CCAGCCCGGGGGC		11	4	0.36	5	0	0				0	0					A	145109260	-	A	145109259	6	5	2	0	1	1	1	0	0	0	0	0	14042	667	23	0		0	SEC22B	1	145109259	RNA	INS	-	TCGA-2G-AAEX-01A-11D-A42Y-10	90839591	145109259	104141362	4	56											
CFH	3075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	196709833	196709833	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagtatggagaagaagttaCgtacaaatgttttgaaggtt	11	3	1	3	rs145975787	bycluster;byfrequency;by1000genomes	TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_000186	exon18	c.C2867T	p.T956M	AAGTTACGTACAA		332	34	0.1	327	0	0	0.001			45	0	0				T	196709833	C	T	196709833	3	4	2	1	0	0	0	0	1	0	0	0	3305	536	19	1	2955	1	CFH	1	196709833	Missense_Mutation	SNP	C	TCGA-2G-AAEX-01A-11D-A42Y-10	51600574	196709833	52540788	5	57											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	228554833	228554843	+	Frame_Shift_Del	DEL	GACCAGTTTGA	GACCAGTTTGA	-													cgctggtcacggggctgctgGaccagtttgagacccgcaag					novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	GACCAGTTTGA	GACCAGTTTGA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	OBSCN	NM_001271223	exon97	c.22455_22465del	p.7485_7489del	CTGCTGGACCAGT		191	14	0.07	164	0	0		2142		1	0	0				-	228554843	GACCAGTTTGA	-	228554833	7	5	2	1	0	1	0	1	0	0	0	0	10859	1174	41	0	21133	0	OBSCN	1	228554833	Frame_Shift_Del	DEL	GACCAGTTTGA	TCGA-2G-AAEX-01A-11D-A42Y-10	31845000	228554833	20695788	6	58											
FMN2	56776	hgsc.bcm.edu	37	chr1	240371511	240371511	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgggcataccccctcctccCcctcttcccggagcgggcat	10	20	1	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	FMN2,NS,carcinoma,+2,1	FMN2	NM_020066	exon5	c.C3399G	p.P1133P	TCCTCCCCCTCTT		98	6	0.06	63	0	0		2	1	4	0	0				G	240371511	C	G	240371511	2	3	2	1	0	0	0	0	0	0	0	1	5982	610	22	5		5	FMN2	1	240371511	Silent	SNP	C	TCGA-2G-AAEX-01A-11D-A42Y-10	11816678	240371511	8879110	7	59											
ZNF496	84838	broad.mit.edu	37	chr1	247492780	247492780	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggactcggggctgggaagcTccccctgggggctagggttc	18	11	0	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	ZNF496	NM_032752	exon3	c.A101G	p.E34G	GGAAGCTCCCCCT		308	6	0.02	267	4	0.0149812734		80		92	0	0				C	247492780	T	C	247492780	3	2	2	1	0	0	0	0	1	0	0	0	18001	1551	54	4	1690	4	ZNF496	1	247492780	Missense_Mutation	SNP	T	TCGA-2G-AAEX-01A-11D-A42Y-10	7121269	247492780	1757841	8	60											
APOB	338	broad.mit.edu	37	chr2	21255321	21255321	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgctgtgctgagggctcGgggatcagggccaccaggta	17	10	1	1	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	APOB	NM_000384	exon10	c.C1257A	p.P419P	GGGCTCGGGGATC		70	3	0.04	70	0	0		761		0	0					T	21255321	G	T	21255321	2	4	2	1	0	0	0	0	0	0	0	1	782	1103	39	1		1	APOB	2	21255321	Silent	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10		21255321	221944052	9	61											
EIF5B	9669	broad.mit.edu	37	chr2	99977775	99977777	+	In_Frame_Del	DEL	TGA	TGA	-													gtggaaatgtactctgggagTgatgatgatgatgattttaa					novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	TGA	TGA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	EIF5B	NM_015904	exon4	c.411_413del	p.137_138del	TGGGAGTGATGAT		163	7	0.04	136	0	0		95		94	0	0				-	99977777	TGA	-	99977775	7	5	2	1	0	1	0	1	0	0	0	0	5072	1693	59	0	425	0	EIF5B	2	99977775	In_Frame_Del	DEL	TGA	TCGA-2G-AAEX-01A-11D-A42Y-10	78722454	99977775	143221598	10	62											
PCDP1	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	120362541	120362541	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aaccaagaaccaggaaaattGaagattaaagaattaagaga	8	4	0	5	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001271049	exon10	c.G1002T	p.L334F	AAAATTGAAGATT		110	19	0.17	85	1	0.0117647059				1	0	0				T	120362541	G	T	120362541	3	4	2	1	0	0	0	0	1	0	0	0	11618	1281	45	3	150	3	PCDP1	2	120362541	Missense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	20384766	120362541	122836832	11	63											
THSD7B	80731	broad.mit.edu;mdanderson.org	37	chr2	137872842	137872842	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagagcgtaccagcagctGccgcactgagggccaaggaa	13	14	0	2	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	THSD7B	.	.	.	.	GCAGCTGCCGCAC		76	4	0.05	76	0	0		506		0	0					T	137872842	G	T	137872842	3	4	2	1	0	0	0	0	1	0	0	0	15939	1319	46	2	1269	2	THSD7B	2	137872842	Missense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	17510301	137872842	105326531	12	64											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179599514	179599514	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtaactcccactgtcttcaActtttacatccgtaatatca	3	12	3	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001267550	exon51	c.T15137C	p.V5046A	TCTTCAACTTTTA		240	33	0.14	289	0	0				0	0					G	179599514	A	G	179599514	3	3	2	1	0	0	0	0	1	0	0	0	16796	43	2	4	89640	4	TTN	2	179599514	Missense_Mutation	SNP	A	TCGA-2G-AAEX-01A-11D-A42Y-10	41726672	179599514	63599859	13	65											
SLC4A3	6508	mdanderson.org	37	chr2	220505587	220505587	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctctgggtggtcaagtccaCggcggcctcactcgcctttc	12	15	3	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_201574	exon22	c.C3605T	p.T1202M	AGTCCACGGCGGC		54	3	0.06	53	0	0				49	0	0				T	220505587	C	T	220505587	3	4	2	1	0	0	0	0	1	0	0	0	14709	536	19	1	3687	1	SLC4A3	2	220505587	Missense_Mutation	SNP	C	TCGA-2G-AAEX-01A-11D-A42Y-10	40906073	220505587	22693786	14	66											
PHLDB2	90102	broad.mit.edu;bcgsc.ca	37	chr3	111667853	111667858	+	In_Frame_Del	DEL	TGCTGA	TGCTGA	-													tccccttccactcagtttccTgctgatgctgatgctgttgc					novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	TGCTGA	TGCTGA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	PHLDB2	NM_001134439	exon10	c.2562_2567del	p.854_856del	GTTTCCTGCTGAT		108	7	0.06	95	0	0		449		8	0	0				-	111667858	TGCTGA	-	111667853	7	5	2	1	0	1	0	1	0	0	0	0	11899	1567	55	0	2681	0	PHLDB2	3	111667853	In_Frame_Del	DEL	TGCTGA	TCGA-2G-AAEX-01A-11D-A42Y-10		111667853	86354577	15	67											
POPDC2	64091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	119378799	119378799	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccggccagagagcagcagggAcaggcggttgatgggtgtct	18	9	1	2	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_022135	exon1	c.T472G	p.S158A	GCAGGGACAGGCG		114	11	0.1	113	0	0				1	0	0				C	119378799	A	C	119378799	3	2	2	1	0	0	0	0	1	0	0	0	12302	275	10	4	638	4	POPDC2	3	119378799	Missense_Mutation	SNP	A	TCGA-2G-AAEX-01A-11D-A42Y-10	7710946	119378799	78643631	16	68											
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	130110226	130110226	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ccttaatacatactcgaacaGatcagcaataattgagaatc	5	9	1	2	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	COL6A5,NS,carcinoma,+1,1	COL6A5	NM_153264	exon7	c.G2621C	p.R874T	CGAACAGATCAGC		475	88	0.19	414	0	0		1	1	0	0					C	130110226	G	C	130110226	3	2	2	1	0	0	0	0	1	0	0	0	3725	942	33	5	2643	5	COL6A5	3	130110226	Missense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	10731427	130110226	67912204	17	69											
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4	rs104886003	bycluster	TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	PIK3CA_ENST00000263967,NS,carcinoma,0,1370	PIK3CA_ENST00000263967	NM_006218	exon10	c.G1633A	p.E545K	ATCACTGAGCAGG		461	50	0.11	425	0	0		0	1370	15	2	0.13				A	178936091	G	A	178936091	3	1	2	1	0	0	0	0	1	0	0	0	11960	1291	45	3	1667	3	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	48825865	178936091	19086339	18	70											
SLIT2	9353	mdanderson.org	37	chr4	20255518	20255518	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacaaggtggcaccgcaggCgtgcccggcgcagtgctctt	15	13	1	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_004787	exon1	c.C80T	p.A27V	CGCAGGCGTGCCC		24	2	0.08	24	0	0				0	0					T	20255518	C	T	20255518	3	4	2	1	0	0	0	0	1	0	0	0	14793	768	27	1	82	1	SLIT2	4	20255518	Missense_Mutation	SNP	C	TCGA-2G-AAEX-01A-11D-A42Y-10		20255518	170898758	19	71											
HMMR	3161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	162909769	162909769	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agcatcagattttggcaactGagagctcaaatcaagaatat	8	7	3	3	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001142556	exon13	c.G1507A	p.E503K	GCAACTGAGAGCT		306	63	0.21	344	0	0				19	9	0.47				A	162909769	G	A	162909769	3	1	2	1	0	0	0	0	1	0	0	0	7282	1291	45	3	1557	3	HMMR	5	162909769	Missense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10		162909769	18005491	20	72											
FOXQ1	94234	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	1313401	1313401	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tacctcatgggcaagttcccCtttttccgcggcagctacac	8	15	1	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_033260	exon1	c.C462G	p.P154P	GTTCCCCTTTTTC		106	16	0.15	75	0	0				0	0					G	1313401	C	G	1313401	2	3	2	1	0	0	0	0	0	0	0	1	6063	668	24	5		5	FOXQ1	6	1313401	Silent	SNP	C	TCGA-2G-AAEX-01A-11D-A42Y-10		1313401	169801666	21	73											
LRRC16A	55604	mdanderson.org	37	chr6	25509914	25509914	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgctcaagtattagaaGgttgcattgctgaaatacac	11	6	1	2	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001173977	exon18	c.G1426T	p.G476C	TTAGAAGGTTGCA		112	5	0.04	100	0	0				10	0	0				T	25509914	G	T	25509914	3	4	2	1	0	0	0	0	1	0	0	0	9015	1000	35	3	1496	3	LRRC16A	6	25509914	Missense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	24196513	25509914	145605153	22	74											
DPCR1	135656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	30919139	30919139	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagcctacagaacatggagaAacgacagtcaatgaggacac	10	9	1	3	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_080870	exon2	c.A2898G	p.E966E	TGGAGAAACGACA		69	14	0.2	72	0	0				1	1	1				G	30919139	A	G	30919139	2	3	2	1	0	0	0	0	0	0	0	1	4739	11	1	4		4	DPCR1	6	30919139	Silent	SNP	A	TCGA-2G-AAEX-01A-11D-A42Y-10	5409225	30919139	140195928	23	75											
DEF6	50619	broad.mit.edu	37	chr6	35278309	35278309	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacggccaagaagaactatcGggcagatagcaacgggaaca	13	9	0	3	rs150604825	bycluster;byfrequency;alternate_allele	TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	DEF6	NM_022047	exon3	c.G311T	p.R104L	ACTATCGGGCAGA		100	3	0.03	76	0	0		36		60	0	0				T	35278309	G	T	35278309	3	4	2	1	0	0	0	0	1	0	0	0	4409	1116	39	1	321	1	DEF6	6	35278309	Missense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	4359170	35278309	135836758	24	76											
SCRN1	9805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	29994942	29994942	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcttatcattatggcatagGtccttggaacttggtcgatt	10	7	1	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001145514	exon3	c.C254T	p.T85I	GCATAGGTCCTTG		156	19	0.12	117	0	0				40	7	0.18				A	29994942	G	A	29994942	3	1	2	1	0	0	0	0	1	0	0	0	13991	1261	44	3	1074	3	SCRN1	7	29994942	Missense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10		29994942	129143721	25	77											
KIF13B	23303	broad.mit.edu	37	chr8	28929816	28929816	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgcaccagcacgtcaggGcccatctccggctgagcctg	12	16	3	1	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	KIF13B	NM_015254	exon39	c.C4539A	p.G1513G	GTCAGGGCCCATC		241	4	0.02	159	0	0		192		13	0	0				T	28929816	G	T	28929816	2	4	2	1	0	0	0	0	0	0	0	1	8316	1190	42	2		2	KIF13B	8	28929816	Silent	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10		28929816	117434206	26	78											
RECQL4	9401	mdanderson.org	37	chr8	145738815	145738815	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtacccgccgccgttcccgGctgcacatgcccgcgtggta	12	17	0	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_004260	exon14	c.C2250A	p.S750R	TTCCCGGCTGCAC		52	3	0.06	23	0	0				220	0	0				T	145738815	G	T	145738815	3	4	2	1	0	0	0	0	1	0	0	0	13253	1194	42	2	1409	2	RECQL4	8	145738815	Missense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	116808999	145738815	625207	27	79											
KCNV2	169522	broad.mit.edu	37	chr9	2717880	2717880	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gccagcatccacggctggacAgagggcaactataactacta	10	12	0	1	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	KCNV2	NM_133497	exon1	c.A141T	p.T47T	CTGGACAGAGGGC		238	6	0.03	152	0	0		72		0	0					T	2717880	A	T	2717880	2	4	2	1	0	0	0	0	0	0	0	1	8138	175	7	5		5	KCNV2	9	2717880	Silent	SNP	A	TCGA-2G-AAEX-01A-11D-A42Y-10		2717880	138495551	28	80											
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	138662153	138662153	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggcccacagggagggacaGgagtctccggagcagtggca	17	11	1	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	KCNT1,NS,carcinoma,+1,1	KCNT1	NM_020822	exon17	c.G1629A	p.Q543Q	GGGACAGGAGTCT		58	9	0.16	61	0	0		1	1	0	0					A	138662153	G	A	138662153	2	1	2	1	0	0	0	0	0	0	0	1	8134	991	35	3		3	KCNT1	9	138662153	Silent	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	135944273	138662153	2551278	29	81											
PNPLA7	375775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	140379046	140379046	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctcaggcttaccgatggcGctgagggcatgctccagctc	14	13	1	1	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001098537	exon21	c.C2340T	p.S780S	GATGGCGCTGAGG		85	10	0.12	93	0	0				0	0					A	140379046	G	A	140379046	2	1	2	1	0	0	0	0	0	0	0	1	12217	1078	38	1		1	PNPLA7	9	140379046	Silent	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	1716893	140379046	834385	30	82											
TIMM23	100287932	broad.mit.edu	37	chr10	51592585	51592585	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggctggtaagtgttagtccTgtcagaccacctcgtgctat	11	10	1	1	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	TIMM23	NM_006327	exon7	c.A549G	p.T183T	TAGTCCTGTCAGA		112	3	0.03	112	1	0.0089285714		4		509	0	0				C	51592585	T	C	51592585	2	2	2	1	0	0	0	0	0	0	0	1	15970	1567	55	4		4	TIMM23	10	51592585	Silent	SNP	T	TCGA-2G-AAEX-01A-11D-A42Y-10		51592585	83942162	31	83											
MUC2	4583	hgsc.bcm.edu	37	chr11	1092970	1092970	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctacggtgaccccaaccccaAcacccaccggcacacagacc	6	21	0	2	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	MUC2_ENST00000441003,NS,carcinoma,-1,1	MUC2_ENST00000441003	NM_002457	exon30	c.A4789C	p.T1597P	ACCCCAACACCCA		37	3	0.08	51	1	0.0196078431		-1	1	0	0					C	1092970	A	C	1092970	3	2	2	1	0	0	0	0	1	0	0	0	10022	43	2	4	4907	4	MUC2	11	1092970	Missense_Mutation	SNP	A	TCGA-2G-AAEX-01A-11D-A42Y-10		1092970	133913546	32	84											
PHLDA2	7262	broad.mit.edu	37	chr11	2950232	2950232	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gccacggcgtcctcggcgggTgcggcgggtgcggtgcgttc	20	13	0	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	PHLDA2	NM_003311	exon1	c.A363C	p.A121A	GGCGGGTGCGGCG		42	19	0.45	26	11	0.4230769231		10		0	0					G	2950232	T	G	2950232	2	3	2	1	0	0	0	0	0	0	0	1	11896	1683	59	4		4	PHLDA2	11	2950232	Silent	SNP	T	TCGA-2G-AAEX-01A-11D-A42Y-10	1857262	2950232	132056284	33	85											
PHLDA2	7262	broad.mit.edu	37	chr11	2950513	2950513	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcggaggtgagcaccccgcGcttcttcttccatagctgga	12	13	2	1	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	PHLDA2,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	PHLDA2	NM_003311	exon1	c.C82A	p.R28S	CCCCGCGCTTCTT		73	7	0.1	57	1	0.0175438596		10	1	17	0	0				T	2950513	G	T	2950513	3	4	2	1	0	0	0	0	1	0	0	0	11896	1087	38	1	380	1	PHLDA2	11	2950513	Missense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	281	2950513	132056003	34	86											
SMPD1	6609	hgsc.bcm.edu	37	chr11	6411972	6411972	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgctggcgctggcgctggcTctgtctgactctcgggttct	15	13	4	1	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	SMPD1_ENST00000342245,colon,carcinoma,+1,2	SMPD1_ENST00000342245	NM_000543	exon1	c.T144G	p.A48A	GCTGGCTCTGTCT		83	5	0.06	61	1	0.0163934426		1	2	12	0	0				G	6411972	T	G	6411972	2	3	2	1	0	0	0	0	0	0	0	1	14857	1538	54	4		4	SMPD1	11	6411972	Silent	SNP	T	TCGA-2G-AAEX-01A-11D-A42Y-10	3461459	6411972	128594544	35	87											
SYVN1	84447	mdanderson.org	37	chr11	64895914	64895914	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcggagctctgctgcatcGggctctccatcctcaggcat	12	15	3	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_172230	exon16	c.C1794A	p.P598P	TGCATCGGGCTCT		68	4	0.06	60	0	0				155	0	0				T	64895914	G	T	64895914	2	4	2	1	0	0	0	0	0	0	0	1	15543	1103	39	1		1	SYVN1	11	64895914	Silent	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	58483942	64895914	70110602	36	88											
INPPL1	3636	ucsc.edu	37	chr11	71942183	71942183	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tgggcgaccgcgagtggctgGacctactgcgcgggggcctc	18	13	0	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	INPPL1	NM_001567	exon12	c.G1447T	p.D483Y	TGGCTGGACCTAC		42	4	0.1	54	0	0		120		75	0	0				T	71942183	G	T	71942183	3	4	2	1	0	0	0	0	1	0	0	0	7804	1174	41	3	1493	3	INPPL1	11	71942183	Missense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	7046269	71942183	63064333	37	89											
FAT3	120114	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	92573793	92573793	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gacagagactcctttcacaaTgggcctcccttttcattctc	6	14	3	1	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	FAT3	NM_001008781	exon17	c.T10434A	p.N3478K	TCACAATGGGCCT		156	33	0.21	172	1	0.0058139535		1822		1	0	0				A	92573793	T	A	92573793	3	1	2	1	0	0	0	0	1	0	0	0	5723	1461	51	5	10500	5	FAT3	11	92573793	Missense_Mutation	SNP	T	TCGA-2G-AAEX-01A-11D-A42Y-10	20631610	92573793	42432723	38	90											
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	2743461	2743461	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccggctgctctgccccatgcAgcactatttctgtgatgcat	9	14	2	1	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001129839	exon30	c.3829-2A>C	.	CCATGCAGCACTA		283	41	0.14	91	0	0				1	0	0				C	2743461	A	C	2743461	5	2	2	1	0	0	0	0	0	0	1	0	2558	202	7	4	4205	4	CACNA1C	12	2743461	Splice_Site	SNP	A	TCGA-2G-AAEX-01A-11D-A42Y-10		2743461	131108434	39	91											
TRAFD1	10906	broad.mit.edu	37	chr12	112579948	112579948	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	caacagccccccaaagagggTggtgaagagagtgcaaactt	12	10	0	3	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	TRAFD1	NM_001143906	exon6	c.T699G	p.G233G	AGAGGGTGGTGAA		145	25	0.17	90	10	0.1111111111		42		63	0	0				G	112579948	T	G	112579948	2	3	2	1	0	0	0	0	0	0	0	1	16507	1683	59	4		4	TRAFD1	12	112579948	Silent	SNP	T	TCGA-2G-AAEX-01A-11D-A42Y-10	109836487	112579948	21271947	40	92											
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	120616506	120616506	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	cccagcatgccagcatagttCtggttgggctctaggctgag	13	11	2	1	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_006836	exon7	c.G582T	p.Q194H	ATAGTTCTGGTTG		237	44	0.19	167	0	0				45	5	0.11				A	120616506	C	A	120616506	3	1	2	1	0	0	0	0	1	0	0	0	6338	912	32	3	7641	3	GCN1L1	12	120616506	Missense_Mutation	SNP	C	TCGA-2G-AAEX-01A-11D-A42Y-10	8036558	120616506	13235389	41	93											
CDX2	1045	mdanderson.org	37	chr13	28542962	28542962	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgccggccaggatggccccGgggactgcgcgctgtccaag	16	15	0	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	CDX2,NS,carcinoma,-1,1	CDX2	NM_001265	exon1	c.C182G	p.P61R	GGCCCCGGGGACT		12	3	0.25	17	0	0		-1	1	0	0					C	28542962	G	C	28542962	3	2	2	1	0	0	0	0	1	0	0	0	3205	1116	39	5	771	5	CDX2	13	28542962	Missense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10		28542962	86626916	42	94											
ATP11A	23250	broad.mit.edu	37	chr13	113530168	113530168	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgcctggctggccatcgtGctgctggtgaccatcagcct	12	16	1	1	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	ATP11A	NM_032189	exon28	c.G3240T	p.V1080V	CATCGTGCTGCTG		92	3	0.03	60	0	0		225		4	0	0				T	113530168	G	T	113530168	2	4	2	1	0	0	0	0	0	0	0	1	1118	1306	46	2		2	ATP11A	13	113530168	Silent	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	84987206	113530168	1639710	43	95											
CHD8	57680	mdanderson.org	37	chr14	21871325	21871325	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcggtcaatggcagcctGtcgaaggttgcctctaactc	12	11	2	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001170629	exon17	c.C3565A	p.Q1189K	CAGCCTGTCGAAG		91	4	0.04	63	0	0				20	0	0				T	21871325	G	T	21871325	3	4	2	1	0	0	0	0	1	0	0	0	3353	1386	48	3	4264	3	CHD8	14	21871325	Missense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10		21871325	85478215	44	96											
IPO4	79711	mdanderson.org	37	chr14	24653309	24653309	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgataaggctgcaaatagGctgtacctggtcaaagcagg	12	10	1	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_024658	exon18	c.C1764A	p.S588R	AAATAGGCTGTAC		124	5	0.04	91	1	0.010989011				196	0	0				T	24653309	G	T	24653309	3	4	2	1	0	0	0	0	1	0	0	0	7838	1194	42	2	1533	2	IPO4	14	24653309	Missense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	2781984	24653309	82696231	45	97											
ADAMTS17	170691	broad.mit.edu	37	chr15	100672218	100672218	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcaggggacttacggggggTtgtcacatttcctctgcctg	14	10	3	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	ADAMTS17	NM_139057	exon12	c.A1715C	p.N572T	GGGGGGTTGTCAC		103	22	0.21	71	10	0.1408450704		127		0	0					G	100672218	T	G	100672218	3	3	2	1	0	0	0	0	1	0	0	0	261	1725	60	4	1616	4	ADAMTS17	15	100672218	Missense_Mutation	SNP	T	TCGA-2G-AAEX-01A-11D-A42Y-10		100672218	1859174	46	98											
USP31	57478	mdanderson.org	37	chr16	23083466	23083466	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtcacgctggctggcttGctgcccgggagccggctcac	16	14	2	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_020718	exon15	c.C2388A	p.S796R	TGGCTTGCTGCCC		54	3	0.06	46	0	0				12	0	0				T	23083466	G	T	23083466	3	4	2	1	0	0	0	0	1	0	0	0	17121	1310	46	2	1678	2	USP31	16	23083466	Missense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10		23083466	67271287	47	99											
RBBP6	5930	broad.mit.edu;bcgsc.ca	37	chr16	24567688	24567688	+	Frame_Shift_Del	DEL	C	C	-													actggaattcccagaagtttCatgatggaagtgaaagatcc					novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	RBBP6	NM_018703	exon7	c.594delC	p.F198fs	AAGTTTCATGATG		72	8	0.11	85	0	0		158		41	5	0.12				-	24567688	C	-	24567688	7	5	2	1	0	1	0	1	0	0	0	0	13154	825	29	0	674	0	RBBP6	16	24567688	Frame_Shift_Del	DEL	C	TCGA-2G-AAEX-01A-11D-A42Y-10	1484222	24567688	65787065	48	100											
DDX19B	11269	broad.mit.edu	37	chr16	70363771	70363771	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagatgctgcttttctccGccacctttgaagactctgtg	9	13	2	3	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	DDX19B	NM_007242	exon9	c.G823A	p.A275T	TTCTCCGCCACCT		252	5	0.02	194	0	0		31		84	0	0				A	70363771	G	A	70363771	3	1	2	1	0	0	0	0	1	0	0	0	4370	1087	38	1	857	1	DDX19B	16	70363771	Missense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	45796083	70363771	19990982	49	101											
HYDIN	54768	mdanderson.org	37	chr16	70954860	70954860	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actccttgcttccggtcccaGtacatgaggatgttctggac	10	12	1	1	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001270974	exon46	c.C7419A	p.Y2473X	GTCCCAGTACATG		59	3	0.05	51	0	0				0	0					T	70954860	G	T	70954860	4	4	2	1	0	0	0	0	0	1	0	0	7510	1024	36	3	8110	3	HYDIN	16	70954860	Nonsense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	591089	70954860	19399893	50	102											
IL17C	27189	broad.mit.edu	37	chr16	88705614	88705614	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcagcaagccacagggggAggcacgagaggccctcagct	16	12	1	1	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	IL17C	NM_013278	exon2	c.A232G	p.R78G	AGGGGGAGGCACG		67	3	0.04	56	1	0.0178571429		6		0	0					G	88705614	A	G	88705614	3	3	2	1	0	0	0	0	1	0	0	0	7679	295	11	4	238	4	IL17C	16	88705614	Missense_Mutation	SNP	A	TCGA-2G-AAEX-01A-11D-A42Y-10	17750754	88705614	1649139	51	103											
ANKRD11	29123	broad.mit.edu	37	chr16	89346906	89346906	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaggcgggaggggcggggTacggcgcctccgaggcgctg	23	10	0	1	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	ANKRD11	NM_001256183	exon9	c.A6044C	p.Y2015S	GCGGGGTACGGCG		70	41	0.59	53	19	0.358490566		195		114	12	0.11				G	89346906	T	G	89346906	3	3	2	1	0	0	0	0	1	0	0	0	635	1638	57	4	1967	4	ANKRD11	16	89346906	Missense_Mutation	SNP	T	TCGA-2G-AAEX-01A-11D-A42Y-10	641292	89346906	1007847	52	104											
SPG7	6687	mdanderson.org	37	chr16	89590464	89590464	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgtaccgagagcggctgCgcaccttgctggtcatcgcg	14	12	1	2	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_003119	exon4	c.C427T	p.R143C	CGGCTGCGCACCT		48	4	0.08	38	0	0				106	0	0				T	89590464	C	T	89590464	3	4	2	1	0	0	0	0	1	0	0	0	15099	768	27	1	441	1	SPG7	16	89590464	Missense_Mutation	SNP	C	TCGA-2G-AAEX-01A-11D-A42Y-10	243558	89590464	764289	53	105											
PSMD11	5717	broad.mit.edu	37	chr17	30771555	30771555	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggtaagatggcggcggcggCggtggtggagttccagagag	21	7	0	2	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	PSMD11	NM_002815	exon1	c.C14T	p.A5V	CGGCGGCGGTGGT		234	8	0.03	218	1	0.004587156		41		92	0	0				T	30771555	C	T	30771555	3	4	2	1	0	0	0	0	1	0	0	0	12742	768	27	1	16	1	PSMD11	17	30771555	Missense_Mutation	SNP	C	TCGA-2G-AAEX-01A-11D-A42Y-10		30771555	50423655	54	106											
C17orf66	256957	mdanderson.org	37	chr17	34190002	34190002	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtcctcccaatcaccttGtctttagagacagcagccca	6	15	2	1	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_152781	exon8	c.C753A	p.D251E	CACCTTGTCTTTA		101	5	0.05	125	0	0				0	0					T	34190002	G	T	34190002	3	4	2	1	0	0	0	0	1	0	0	0	1883	1368	48	3	991	3	C17orf66	17	34190002	Missense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	3418447	34190002	47005208	55	107											
ACLY	47	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	40028012	40028012	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttgttcacaaactccatgGggataatgccactgtcaaag	8	10	3	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	ACLY	NM_001096	exon25	c.C2867T	p.P956L	TCCATGGGGATAA		155	26	0.17	122	1	0.0081967213		85		186	48	0.26				A	40028012	G	A	40028012	3	1	2	1	0	0	0	0	1	0	0	0	143	1232	43	3	458	3	ACLY	17	40028012	Missense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	5838010	40028012	41167198	56	108											
CDC27	996	mdanderson.org	37	chr17	45234325	45234325	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tggtcctcctaataaacttcGaccagtttttggtttatttt	6	8	0	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_001114091	exon7	c.C796T	p.R266X	AACTTCGACCAGT		58	3	0.05	52	0	0				33	0	0				A	45234325	G	A	45234325	4	1	2	1	0	0	0	0	0	1	0	0	3088	1066	37	1	1748	1	CDC27	17	45234325	Nonsense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	5206313	45234325	35960885	57	109											
UTP18	51096	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	49338191	49338191	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaccgcctgaggctggaggaGgacaaaccggccgtggagcg	17	11	0	1	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_016001	exon1	c.G246A	p.E82E	GGAGGAGGACAAA		174	31	0.18	123	0	0				70	15	0.21				A	49338191	G	A	49338191	2	1	2	1	0	0	0	0	0	0	0	1	17157	991	35	3		3	UTP18	17	49338191	Silent	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	4103866	49338191	31857019	58	110											
TMC6	11322	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	76117157	76117157	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctccagggcggccaggacaCggcacaggtagggggccccc	17	15	0	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	TMC6	NM_001127198	exon12	c.G1472A	p.R491H	AGGACACGGCACA		82	6	0.07	65	0	0		42		87	0	0				T	76117157	C	T	76117157	3	4	2	1	0	0	0	0	1	0	0	0	16048	536	19	1	981	1	TMC6	17	76117157	Missense_Mutation	SNP	C	TCGA-2G-AAEX-01A-11D-A42Y-10	26778966	76117157	5078053	59	111											
MUC16	94025	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	9048471	9048471	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagagttggaatacttgtacTgtttactccactagaactag	8	8	0	2	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	MUC16	NM_024690	exon5	c.A33160G	p.S11054G	TTGTACTGTTTAC		76	6	0.08	51	0	0		4315		0	0					C	9048471	T	C	9048471	3	2	2	1	0	0	0	0	1	0	0	0	10020	1580	55	4	10683	4	MUC16	19	9048471	Missense_Mutation	SNP	T	TCGA-2G-AAEX-01A-11D-A42Y-10		9048471	50080512	60	112											
ALKBH6	84964	broad.mit.edu	37	chr19	36501930	36501930	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgctcaggaaccatccctcGgggatgaggaagcccacctg	12	15	1	1	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	ALKBH6	NM_198867	exon5	c.C286A	p.R96R	TCCCTCGGGGATG		120	3	0.03	73	0	0		16		112	0	0				T	36501930	G	T	36501930	2	4	2	1	0	0	0	0	0	0	0	1	527	1124	39	1		1	ALKBH6	19	36501930	Silent	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	27453459	36501930	22627053	61	113											
MAMSTR	284358	broad.mit.edu	37	chr19	49218600	49218600	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cggacccctcggcttgggggTccgccctggatccctgtctc	13	17	1	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	MAMSTR	NM_001130915	exon5	c.A344C	p.D115A	TGGGGGTCCGCCC		143	22	0.15	99	7	0.0707070707		36		3	0	0				G	49218600	T	G	49218600	3	3	2	1	0	0	0	0	1	0	0	0	9258	1667	58	4	927	4	MAMSTR	19	49218600	Missense_Mutation	SNP	T	TCGA-2G-AAEX-01A-11D-A42Y-10	12716670	49218600	9910383	62	114											
LENG9	94059	mdanderson.org	37	chr19	54974333	54974333	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccatggaagcggaagaagCgcacgcggtgctggggcact	18	10	0	1	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_198988	exon1	c.G443A	p.R148H	AAGAAGCGCACGC		14	2	0.14	10	0	0				4	0	0				T	54974333	C	T	54974333	3	4	2	1	0	0	0	0	1	0	0	0	8763	768	27	1	1066	1	LENG9	19	54974333	Missense_Mutation	SNP	C	TCGA-2G-AAEX-01A-11D-A42Y-10	5755733	54974333	4154650	63	115											
STAU1	6780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	47782664	47782664	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaggctgtgagagaagagaCtggttcttgttcagtatttg	13	4	2	3	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_017453	exon3	c.G75C	p.Q25H	AAGAGACTGGTTC		139	28	0.2	113	0	0				10	3	0.3				G	47782664	C	G	47782664	3	3	2	1	0	0	0	0	1	0	0	0	15327	564	20	5	1724	5	STAU1	20	47782664	Missense_Mutation	SNP	C	TCGA-2G-AAEX-01A-11D-A42Y-10		47782664	15242856	64	116											
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	60899145	60899145	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctggcttacttgttggaaGgcactgagagggggcagggg	20	6	0	1	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_005560	exon43	c.C5759T	p.P1920L	TTGGAAGGCACTG		82	10	0.12	79	0	0				35	8	0.23				A	60899145	G	A	60899145	3	1	2	1	0	0	0	0	1	0	0	0	8647	1000	35	3	5480	3	LAMA5	20	60899145	Missense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	13116481	60899145	2126375	65	117											
KRTAP10-10	353333	mdanderson.org	37	chr21	46058034	46058034	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttccctcctctgccgccccGtgtgctcccgccctgcctgc	8	22	1	0	rs1785472	by2hit2allele	TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_181688	exon1	c.G700A	p.V234M	CGCCCCGTGTGCT		111	11	0.1	77	1	0.012987013				0	0					A	46058034	G	A	46058034	3	1	2	1	0	0	0	0	1	0	0	0	8548	1145	40	1	702	1	KRTAP10-10	21	46058034	Missense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10		46058034	2071861	66	118											
TTC38	55020	mdanderson.org	37	chr22	46664415	46664415	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttgccgtctgtaggcctGgaaggatgcgaggctcccgc	14	12	2	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_017931	exon2	c.G38T	p.W13L	AGGCCTGGAAGGA		58	3	0.05	75	0	0				0	0					T	46664415	G	T	46664415	3	4	2	1	0	0	0	0	1	0	0	0	16767	1357	47	3	44	3	TTC38	22	46664415	Missense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10		46664415	4640151	67	119											
CELSR1	9620	mdanderson.org	37	chr22	46765695	46765695	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgggggtccaggccgaccGccagtcctgaacacagcggg	15	15	0	1	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_014246	exon26	c.C7766A	p.A2589E	CCGACCGCCAGTC		39	3	0.08	53	0	0				19	0	0				T	46765695	G	T	46765695	3	4	2	1	0	0	0	0	1	0	0	0	3243	1087	38	1	1318	1	CELSR1	22	46765695	Missense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	101280	46765695	4538871	68	120											
SPANXN5	494197	broad.mit.edu	37	chrX	52825639	52825639	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	atctttttcaaactcggttcGaggactaagtccctgtttgg	9	9	2	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	SPANXN5	NM_001009616	exon2	c.C108T	p.L36L	CGGTTCGAGGACT		254	6	0.02	178	0	0		12		1	0	0				A	52825639	G	A	52825639	2	1	2	1	0	0	0	0	0	0	0	1	15049	1045	37	1		1	SPANXN5	23	52825639	Silent	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10		52825639	102444921	69	121											
AR	367	mdanderson.org	37	chrX	66766276	66766276	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctgggtcaccctcagccGccgcttcctcatcctggcac	9	18	4	0	novel		TCGA-2G-AAEX-01A-11D-A42Y-10	TCGA-2G-AAEX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3a994c1-3c17-4147-a513-92bfb4f2b432	3d8c1d4a-4857-40c9-93d8-f7a5300fa83e	.	.	NM_000044	exon1	c.G1288T	p.A430S	TCAGCCGCCGCTT		27	3	0.11	27	0	0				0	0					T	66766276	G	T	66766276	3	4	2	1	0	0	0	0	1	0	0	0	833	1087	38	1	1290	1	AR	23	66766276	Missense_Mutation	SNP	G	TCGA-2G-AAEX-01A-11D-A42Y-10	13940637	66766276	88504284	70	122											
CASZ1	54897	mdanderson.org	37	chr1	10699456	10699456	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgggaggcccgggcgcgGggccctctgccgcgggctcg	20	14	1	1	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001079843	exon21	c.C4823A	p.P1608H	GGCGCGGGGCCCT		44	3	0.07	39	0	0				0	0					T	10699456	G	T	10699456	3	4	3	1	0	0	0	0	1	0	0	0	2703	1232	43	3	460	3	CASZ1	1	10699456	Missense_Mutation	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10		10699456	238551165	1	123											
TCHH	7062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	152082981	152082981	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctgcagcagCtgctgttccttcctcagctg	7	18	1	0	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_007113	exon3	c.G2712A	p.Q904Q	CAGCAGCTGCTGT		131	16	0.12	140	0	0				0	0					T	152082981	C	T	152082981	2	4	3	1	0	0	0	0	0	0	0	1	15759	796	28	2		2	TCHH	1	152082981	Silent	SNP	C	TCGA-2G-AAF1-01A-11D-A42Y-10	141383525	152082981	97167640	2	124											
KCNJ3	3760	mdanderson.org	37	chr2	155555973	155555973	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catggtctccgcgcagattcGctgcaagctgctcaaagtaa	10	12	2	1	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001260509	exon1	c.G686T	p.R229L	AGATTCGCTGCAA		15	2	0.13	10	0	0				0	0					T	155555973	G	T	155555973	3	4	3	1	0	0	0	0	1	0	0	0	8095	1087	38	1	688	1	KCNJ3	2	155555973	Missense_Mutation	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10		155555973	87643400	3	125											
GBX2	2637	mdanderson.org	37	chr2	237076461	237076461	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcggcggcagcactaccgGccggtagggcatgaacatgg	17	12	0	1	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001485	exon1	c.C154A	p.P52T	CTACCGGCCGGTA		42	3	0.07	36	0	0				10	0	0				T	237076461	G	T	237076461	3	4	3	1	0	0	0	0	1	0	0	0	6320	1203	42	2	900	2	GBX2	2	237076461	Missense_Mutation	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10	81520488	237076461	6122912	4	126											
TTLL3	26140	broad.mit.edu	37	chr3	9852059	9852060	+	In_Frame_Ins	INS	-	-	GAT													ccccgcacaccccggtcctcINSgacccctctccgcaggatgg					rs34761997	bycluster;by1000genomes	TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	TTLL3	NM_001025930	exon1	c.369_370insGAT	p.L123delinsLD	GGTCCTCGACCCC		11	6	0.55	6	0	0		51		1	0	0				GAT	9852060	-	GAT	9852059	7	5	3	1	0	1	1	0	0	0	0	0	16789	899	31	0		0	TTLL3	3	9852059	In_Frame_Ins	INS	-	TCGA-2G-AAF1-01A-11D-A42Y-10		9852059	188170371	5	127											
TKT	7086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	53264545	53264545	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgaagatctccgagaaggtGgaatttttggtgtccccatc	11	8	1	3	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001258028	exon9	c.C1059G	p.S353S	GAAGGTGGAATTT		153	10	0.07	157	0	0				790	226	0.29				C	53264545	G	C	53264545	2	2	3	1	0	0	0	0	0	0	0	1	15993	1335	47	5		5	TKT	3	53264545	Silent	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10	43412486	53264545	144757885	6	128											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	55599320	55599320	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgattttggtctagccagaGacatcaagaatgattctaat	9	6	3	4	rs121913506	bycluster	TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	KIT,colon,carcinoma,0,932	KIT	NM_000222	exon17	c.G2446T	p.D816Y	GCCAGAGACATCA		83	10	0.12	87	0	0		0	932	378	205	0.54				T	55599320	G	T	55599320	3	4	3	1	0	0	0	0	1	0	0	0	8371	942	33	3	2512	3	KIT	4	55599320	Missense_Mutation	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10		55599320	135554956	7	129											
BMP2K	55589	mdanderson.org	37	chr4	79792130	79792130	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcaacagcagcagcagcaAcagcaacagcagcagcagca	10	14	0	0	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_017593	exon11	c.A1425G	p.Q475Q	GCAGCAACAGCAA		26	4	0.15	18	0	0				7	0	0				G	79792130	A	G	79792130	2	3	3	1	0	0	0	0	0	0	0	1	1459	40	2	4		4	BMP2K	4	79792130	Silent	SNP	A	TCGA-2G-AAF1-01A-11D-A42Y-10	24192810	79792130	111362146	8	130											
DSPP	1834	bcgsc.ca	37	chr4	88537285	88537285	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgacagcagtgacagcagCgacagcagtgacagcagcga	14	11	0	2	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	DSPP	NM_014208	exon5	c.C3471T	p.S1157S	CAGCAGCGACAGC		150	7	0.05	129	2	0.015503876		174		0	0					T	88537285	C	T	88537285	2	4	3	1	0	0	0	0	0	0	0	1	4808	767	27	1		1	DSPP	4	88537285	Silent	SNP	C	TCGA-2G-AAF1-01A-11D-A42Y-10	8745155	88537285	102616991	9	131											
CENPE	1062	broad.mit.edu	37	chr4	104054015	104054015	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgaaattcagtctttatGctagggaactcactttctga	8	7	4	2	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	CENPE	NM_001813	exon42	c.C6759A	p.S2253R	CTTTATGCTAGGG		201	5	0.02	165	0	0		253		38	0	0				T	104054015	G	T	104054015	3	4	3	1	0	0	0	0	1	0	0	0	3252	1310	46	2	1378	2	CENPE	4	104054015	Missense_Mutation	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10	15516730	104054015	87100261	10	132											
NAA15	80155	broad.mit.edu	37	chr4	140264029	140264029	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgcgcagagagcatcatGgattggttatgctattgctt	11	8	1	1	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	NAA15	NM_057175	exon5	c.G452T	p.W151L	CATCATGGATTGG		190	4	0.02	188	0	0		88		61	0	0				T	140264029	G	T	140264029	3	4	3	1	0	0	0	0	1	0	0	0	10165	1357	47	3	470	3	NAA15	4	140264029	Missense_Mutation	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10	36210014	140264029	50890247	11	133											
RAI14	26064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	34823512	34823512	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catggataattattcacattTccacgagctgagggtcacgg	10	9	2	1	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001145525	exon17	c.T1574C	p.F525S	CACATTTCCACGA		126	12	0.1	106	0	0				44	22	0.5				C	34823512	T	C	34823512	3	2	3	1	0	0	0	0	1	0	0	0	13059	1783	62	4	1684	4	RAI14	5	34823512	Missense_Mutation	SNP	T	TCGA-2G-AAF1-01A-11D-A42Y-10		34823512	146091748	12	134											
IQGAP2	10788	mdanderson.org	37	chr5	75969834	75969834	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgatccatgagaaattcccCgatgcaacagaagatgagct	9	10	0	4	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	IQGAP2,NS,malignant_melanoma,+1,1	IQGAP2	NM_006633	exon26	c.C3267A	p.P1089P	ATTCCCCGATGCA		82	4	0.05	82	0	0		1	1	35	0	0				A	75969834	C	A	75969834	2	1	3	1	0	0	0	0	0	0	0	1	7858	639	23	1		1	IQGAP2	5	75969834	Silent	SNP	C	TCGA-2G-AAF1-01A-11D-A42Y-10	41146322	75969834	104945426	13	135											
SNCAIP	9627	broad.mit.edu	37	chr5	121758672	121758672	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcccagtgaagcgggtttcGccactgaaacatcagccaga	11	13	1	3	rs147854746	bycluster;by1000genomes	TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	SNCAIP_ENST00000503116,NS,malignant_melanoma,+1,3	SNCAIP	NM_005460	exon4	c.G240A	p.S80S	GGTTTCGCCACTG		234	5	0.02	240	0	0		308	3	1	0	0				A	121758672	G	A	121758672	2	1	3	1	0	0	0	0	0	0	0	1	14894	1074	38	1		1	SNCAIP	5	121758672	Silent	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10	45788838	121758672	59156588	14	136											
OR2Y1	134083	mdanderson.org	37	chr5	180166238	180166238	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taattatagtataaaaaaggGcaacaaattttccctcacgc	5	8	1	0	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001001657	exon1	c.C821A	p.A274D	AAAAGGGCAACAA		48	3	0.06	61	0	0				0	0					T	180166238	G	T	180166238	3	4	3	1	0	0	0	0	1	0	0	0	11082	1203	42	2	118	2	OR2Y1	5	180166238	Missense_Mutation	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10	58407566	180166238	749022	15	137											
HIST1H2BO	8348	mdanderson.org	37	chr6	27861278	27861278	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atctgctcctgcccccaaaaAgggctccaagaaagccgtaa	8	14	1	1	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_003527	exon1	c.A38G	p.K13R	CCAAAAAGGGCTC		54	3	0.06	86	0	0				3	0	0				G	27861278	A	G	27861278	3	3	3	1	0	0	0	0	1	0	0	0	7194	72	3	4	40	4	HIST1H2BO	6	27861278	Missense_Mutation	SNP	A	TCGA-2G-AAF1-01A-11D-A42Y-10		27861278	143253789	16	138											
TSPYL4	23270	mdanderson.org	37	chr6	116574167	116574167	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atatgagcctgggggtcttgGcctcggtgccagcggattgg	17	9	1	1	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_021648	exon1	c.C1005A	p.G335G	GTCTTGGCCTCGG		138	5	0.04	151	0	0				57	0	0				T	116574167	G	T	116574167	2	4	3	1	0	0	0	0	0	0	0	1	16721	1190	42	2		2	TSPYL4	6	116574167	Silent	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10	88712889	116574167	54540900	17	139											
IRF5	3663	mdanderson.org	37	chr7	128588820	128588820	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggcccctcctggagcagGccttggtgttggccaggggc	16	14	0	0	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001098629	exon9	c.G1493T	p.G498V	GAGCAGGCCTTGG		37	3	0.08	45	0	0				58	0	0				T	128588820	G	T	128588820	3	4	3	1	0	0	0	0	1	0	0	0	7876	1203	42	2	1523	2	IRF5	7	128588820	Missense_Mutation	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10		128588820	30549843	18	140											
PIGO	84720	mdanderson.org	37	chr9	35090665	35090665	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctgccatggcacagtaaaAggacctggaagaaaagatat	11	8	0	2	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_032634	exon8	c.T2652C	p.P884P	AGTAAAAGGACCT		55	3	0.05	41	0	0				93	0	0				G	35090665	A	G	35090665	2	3	3	1	0	0	0	0	0	0	0	1	11941	59	3	4		4	PIGO	9	35090665	Silent	SNP	A	TCGA-2G-AAF1-01A-11D-A42Y-10		35090665	106122766	19	141											
PALM2-AKAP2	445815	mdanderson.org	37	chr9	112899361	112899361	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaacagttgctgctgcagAagcagttacagcagcagcag	13	9	0	1	rs4978872	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_007203	exon8	c.A1537T	p.K513X	CTGCAGAAGCAGT		96	3	0.03	98	0	0				11	0	0				T	112899361	A	T	112899361	4	4	3	1	0	0	0	0	0	1	0	0	11456	247	9	5	1567	5	PALM2-AKAP2	9	112899361	Nonsense_Mutation	SNP	A	TCGA-2G-AAF1-01A-11D-A42Y-10	77808696	112899361	28314070	20	142											
SETX	23064	mdanderson.org	37	chr9	135152534	135152534	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaacatcgaatggcttctGtctgtctgtaaaaaaaaaaa	7	6	3	1	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_015046	exon22	c.C6848A	p.T2283K	GCTTCTGTCTGTC		52	4	0.08	57	3	0.0526315789				68	0	0				T	135152534	G	T	135152534	3	4	3	1	0	0	0	0	1	0	0	0	14194	1377	48	3	1205	3	SETX	9	135152534	Missense_Mutation	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10	22253173	135152534	6060897	21	143											
MRPS2	51116	mdanderson.org	37	chr9	138392585	138392585	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	atcctcggccgcgctgccccGaatactcggcgcgggtgagc	14	16	0	1	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_016034	exon1	c.G29A	p.R10Q	TGCCCCGAATACT		23	2	0.09	27	0	0				105	0	0				A	138392585	G	A	138392585	3	1	3	1	0	0	0	0	1	0	0	0	9879	1058	37	1	31	1	MRPS2	9	138392585	Missense_Mutation	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10	3240051	138392585	2820846	22	144											
MCM10	55388	hgsc.bcm.edu	37	chr10	13230971	13230971	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtccaccttctctggaGgacgaattccaaagaagttt	9	10	1	1	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_182751	exon10	c.G1309T	p.G437X	TCTGGAGGACGAA		100	4	0.04	84	0	0				20	0	0				T	13230971	G	T	13230971	4	4	3	1	0	0	0	0	0	1	0	0	9434	1001	35	3	1343	3	MCM10	10	13230971	Nonsense_Mutation	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10		13230971	122303776	23	145											
ZEB1	6935	mdanderson.org	37	chr10	31816109	31816109	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctgatgaaggatgacaggGctgaaagtcaagcaagcagc	14	7	2	4	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001174096	exon9	c.G3295A	p.A1099T	GACAGGGCTGAAA		16	2	0.13	20	0	0				36	0	0				A	31816109	G	A	31816109	3	1	3	1	0	0	0	0	1	0	0	0	17680	1203	42	2	3340	2	ZEB1	10	31816109	Missense_Mutation	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10	18585138	31816109	103718638	24	146											
KIF5B	3799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	32323677	32323677	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tagtgttccgcaggatcttaTttttttctttttctttttca	5	7	4	0	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_004521	exon11	c.A1052G	p.N351S	ATCTTATTTTTTT		158	11	0.07	157	0	0				148	33	0.22				C	32323677	T	C	32323677	3	2	3	1	0	0	0	0	1	0	0	0	8347	1493	52	4	1899	4	KIF5B	10	32323677	Missense_Mutation	SNP	T	TCGA-2G-AAF1-01A-11D-A42Y-10	507568	32323677	103211070	25	147											
GDF10	2662	mdanderson.org	37	chr10	48438614	48438614	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgggggccctgtggctgcCggccacatcccggagcaaca	16	15	0	0	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_004962	exon1	c.G97A	p.G33S	GGCTGCCGGCCAC		23	2	0.09	22	0	0				0	0					T	48438614	C	T	48438614	3	4	3	1	0	0	0	0	1	0	0	0	6352	652	23	1	1351	1	GDF10	10	48438614	Missense_Mutation	SNP	C	TCGA-2G-AAF1-01A-11D-A42Y-10	16114937	48438614	87096133	26	148											
VDAC2	7417	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	76970938	76970938	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcgacccacggacagactTgcgcgcgtcgtaagtaaagc	13	12	0	1	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_003375	exon2	c.T22A	p.C8S	CAGACTTGCGCGC		119	16	0.13	126	0	0				97	23	0.24				A	76970938	T	A	76970938	3	1	3	1	0	0	0	0	1	0	0	0	17206	1812	63	5	24	5	VDAC2	10	76970938	Missense_Mutation	SNP	T	TCGA-2G-AAF1-01A-11D-A42Y-10	28532324	76970938	58563809	27	149											
ECHS1	1892	mdanderson.org	37	chr10	135180455	135180455	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaccatctccatcgccagcGacttcccaacagcacgggtg	10	16	1	0	rs200293355	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	ECHS1,colon,carcinoma,0,1	ECHS1	NM_004092	exon5	c.C557A	p.S186X	GCCAGCGACTTCC		44	3	0.07	26	0	0		0	1	396	0	0				T	135180455	G	T	135180455	4	4	3	1	0	0	0	0	0	1	0	0	4922	1059	37	1	331	1	ECHS1	10	135180455	Nonsense_Mutation	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10	58209517	135180455	354292	28	150											
NLRP6	171389	mdanderson.org	37	chr11	281438	281438	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacttcggctgcatggtttcAgagcgtgtgaagcaggaggc	15	9	1	2	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_138329	exon4	c.A1704G	p.S568S	GGTTTCAGAGCGT		53	4	0.08	46	0	0				2	0	0				G	281438	A	G	281438	2	3	3	1	0	0	0	0	0	0	0	1	10527	175	7	4		4	NLRP6	11	281438	Silent	SNP	A	TCGA-2G-AAF1-01A-11D-A42Y-10		281438	134725078	29	151											
OR51G2	81282	mdanderson.org	37	chr11	4936427	4936427	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaatgagtgctacactaCgacccagagagaccaggcca	10	11	0	3	rs374071063	alternate_allele	TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001005238	exon1	c.G467T	p.R156L	ACACTACGACCCA		53	3	0.06	42	0	0				0	0					A	4936427	C	A	4936427	3	1	3	1	0	0	0	0	1	0	0	0	11146	536	19	1	481	1	OR51G2	11	4936427	Missense_Mutation	SNP	C	TCGA-2G-AAF1-01A-11D-A42Y-10	4654989	4936427	130070089	30	152											
COMMD9	29099	hgsc.bcm.edu;mdanderson.org	37	chr11	36310946	36310946	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtgctgcaaaatgctccGctgtcagggcagccatcttg	13	11	2	0	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_014186	exon1	c.C17A	p.A6E	TGCTCCGCTGTCA		53	4	0.08	64	0	0				42	0	0				T	36310946	G	T	36310946	3	4	3	1	0	0	0	0	1	0	0	0	3746	1087	38	1	603	1	COMMD9	11	36310946	Missense_Mutation	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10	31374519	36310946	98695570	31	153											
IFT46	56912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	118416169	118416169	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agggaaaagagcagatggagGgactggatccgactcttgta	15	6	1	2	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_020153	exon12	c.C927T	p.S309S	ATGGAGGGACTGG		94	10	0.11	109	0	0				95	20	0.21				A	118416169	G	A	118416169	2	1	3	1	0	0	0	0	0	0	0	1	7603	1219	43	3		3	IFT46	11	118416169	Silent	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10	82105223	118416169	16590347	32	154											
PHLDB1	23187	mdanderson.org	37	chr11	118514575	118514575	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttccccggacccgcagcGgccccctcccctcctcctct	6	26	1	0	rs145786415	bycluster;alternate_allele	TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001144758	exon14	c.G2935T	p.G979C	CGCAGCGGCCCCC		54	3	0.06	57	0	0				66	0	0				T	118514575	G	T	118514575	3	4	3	1	0	0	0	0	1	0	0	0	11898	1116	39	1	2985	1	PHLDB1	11	118514575	Missense_Mutation	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10	98406	118514575	16491941	33	155											
TECTA	7007	broad.mit.edu	37	chr11	120989053	120989053	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaggtgttttgggatgacTtgaactgcaccgtcaagtgc	15	7	1	2	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	TECTA	NM_005422	exon6	c.T829C	p.L277L	GATGACTTGAACT		130	4	0.03	127	0	0		329		2	0	0				C	120989053	T	C	120989053	2	2	3	1	0	0	0	0	0	0	0	1	15805	1606	56	4		4	TECTA	11	120989053	Silent	SNP	T	TCGA-2G-AAF1-01A-11D-A42Y-10	2474478	120989053	14017463	34	156											
KRT73	319101	mdanderson.org	37	chr12	53002214	53002214	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccctgtgcctgccatcccGgccatggagctgttgatgac	12	15	0	2	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	KRT73,right_lower_lobe,carcinoma,0,1	KRT73	NM_175068	exon9	c.C1389A	p.A463A	CATCCCGGCCATG		39	3	0.08	42	0	0		0	1	0	0					T	53002214	G	T	53002214	2	4	3	1	0	0	0	0	0	0	0	1	8528	1103	39	1		1	KRT73	12	53002214	Silent	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10		53002214	80849681	35	157											
RAP1B	5908	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	69050092	69050092	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgtatttttaggttccaAtgattcttgttggtaataag	8	3	1	1	rs372360254		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001010942	exon6	c.A331G	p.M111V	GTTCCAATGATTC		200	16	0.08	222	0	0				96	18	0.19				G	69050092	A	G	69050092	3	3	3	1	0	0	0	0	1	0	0	0	13087	101	4	4	349	4	RAP1B	12	69050092	Missense_Mutation	SNP	A	TCGA-2G-AAF1-01A-11D-A42Y-10	16047878	69050092	64801803	36	158											
KCTD12	115207	mdanderson.org	37	chr13	77459340	77459340	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agacgtactcggtgtagctgGtccagatcttgtcctcgctc	11	12	1	2	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_138444	exon1	c.C944A	p.T315N	TAGCTGGTCCAGA		43	3	0.07	48	0	0				51	0	0				T	77459340	G	T	77459340	3	4	3	1	0	0	0	0	1	0	0	0	8142	1261	44	3	37	3	KCTD12	13	77459340	Missense_Mutation	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10		77459340	37710538	37	159											
NIN	51199	mdanderson.org	37	chr14	51210176	51210176	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtgactttaagctcgcactCtgatgttcccaggatttctg	9	10	2	2	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_020921	exon24	c.G5259T	p.Q1753H	CGCACTCTGATGT		102	5	0.05	100	0	0				26	0	0				A	51210176	C	A	51210176	3	1	3	1	0	0	0	0	1	0	0	0	10463	912	32	3	1322	3	NIN	14	51210176	Missense_Mutation	SNP	C	TCGA-2G-AAF1-01A-11D-A42Y-10		51210176	56139364	38	160											
TSHR	7253	mdanderson.org	37	chr14	81534631	81534631	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgtgactctgcagcagctGgaatcacactccttctacaa	8	12	3	1	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	TSHR_ENST00000554435,NS,carcinoma,+1,2	TSHR_ENST00000554435	NM_001018036	exon3	c.G276T	p.L92L	GCAGCTGGAATCA		50	3	0.06	57	0	0		1	2	1	0	0				T	81534631	G	T	81534631	2	4	3	1	0	0	0	0	0	0	0	1	16682	1335	47	3		3	TSHR	14	81534631	Silent	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10	30324455	81534631	25814909	39	161											
C15orf56	644809	mdanderson.org	37	chr15	40544585	40544585	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caggccagggcccggaggcgAagggcgggcgggaactgggg	23	10	0	0	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001039905	exon2	c.T387C	p.L129L	GAGGCGAAGGGCG		18	3	0.17	12	1	0.0833333333				0	0					G	40544585	A	G	40544585	2	3	3	1	0	0	0	0	0	0	0	1	1810	233	9	4		4	C15orf56	15	40544585	Silent	SNP	A	TCGA-2G-AAF1-01A-11D-A42Y-10		40544585	61986807	40	162											
RFX7	64864	broad.mit.edu	37	chr15	56388298	56388298	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggatgctcatctgatgatGtttcgggttccactttgact	10	9	2	3	rs202048055	bycluster;alternate_allele	TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	RFX7	NM_022841	exon9	c.C1628A	p.T543K	GATGATGTTTCGG		143	6	0.04	120	0	0		170		22	0	0				T	56388298	G	T	56388298	3	4	3	1	0	0	0	0	1	0	0	0	13319	1377	48	3	2758	3	RFX7	15	56388298	Missense_Mutation	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10	15843713	56388298	46143094	41	163											
CASKIN1	57524	mdanderson.org	37	chr16	2229742	2229742	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcgggcgggggcaatggGggtaggtgcgccaggtcggt	21	10	0	0	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_020764	exon18	c.C3627A	p.P1209P	CAATGGGGGTAGG		12	2	0.17	18	0	0				0	0					T	2229742	G	T	2229742	2	4	3	1	0	0	0	0	0	0	0	1	2684	1219	43	3		3	CASKIN1	16	2229742	Silent	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10		2229742	88125011	42	164											
ABCA3	21	mdanderson.org	37	chr16	2339582	2339582	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagggcagggagctggatGgcctggatgtccatactgct	16	9	0	0	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_001089	exon20	c.C2553A	p.A851A	CTGGATGGCCTGG		52	3	0.06	43	0	0				26	0	0				T	2339582	G	T	2339582	2	4	3	1	0	0	0	0	0	0	0	1	33	1335	47	3		3	ABCA3	16	2339582	Silent	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10	109840	2339582	88015171	43	165											
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu	37	chr16	21073932	21073932	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagcacttcttcaagtgCggctgcactcggagagggtc	12	11	3	1	rs374099468		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_017539	exon25	c.G3591A	p.P1197P	CAAGTGCGGCTGC		118	5	0.04	121	0	0				1	0	0				T	21073932	C	T	21073932	2	4	3	1	0	0	0	0	0	0	0	1	4631	755	27	1		1	DNAH3	16	21073932	Silent	SNP	C	TCGA-2G-AAF1-01A-11D-A42Y-10	18734350	21073932	69280821	44	166											
ATP8B1	5205	mdanderson.org	37	chr18	55335769	55335769	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaatagctgtagctcccaGgagctagaatgtatattaaa	8	7	1	1	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_005603	exon19	c.C2101A	p.L701M	CTCCCAGGAGCTA		61	3	0.05	68	0	0				11	0	0				T	55335769	G	T	55335769	3	4	3	1	0	0	0	0	1	0	0	0	1192	991	35	3	1694	3	ATP8B1	18	55335769	Missense_Mutation	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10		55335769	22741479	45	167											
TNFRSF11A	8792	mdanderson.org	37	chr18	60036584	60036584	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcgcctatggcatgggcctTccccctgaagaagaagccag	12	13	0	3	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_003839	exon9	c.T1434C	p.L478L	GGGCCTTCCCCCT		16	2	0.13	30	1	0.0333333333				1	0	0				C	60036584	T	C	60036584	2	2	3	1	0	0	0	0	0	0	0	1	16343	1770	62	4		4	TNFRSF11A	18	60036584	Silent	SNP	T	TCGA-2G-AAF1-01A-11D-A42Y-10	4700815	60036584	18040664	46	168											
SH3GL1	6455	mdanderson.org	37	chr19	4362649	4362649	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcaggggaagcccccgttGgactgctcaggctctccaag	14	13	2	0	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_003025	exon8	c.C813A	p.S271S	CCCGTTGGACTGC		48	3	0.06	42	0	0				74	0	0				T	4362649	G	T	4362649	2	4	3	1	0	0	0	0	0	0	0	1	14304	1335	47	3		3	SH3GL1	19	4362649	Silent	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10		4362649	54766334	47	169											
ZNRF4	148066	mdanderson.org	37	chr19	5455601	5455601	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggtcattccaactcaactGccctcgcgtcctggccacag	9	17	2	0	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_181710	exon1	c.G99A	p.L33L	TCAACTGCCCTCG		35	3	0.09	47	0	0				0	0					A	5455601	G	A	5455601	2	1	3	1	0	0	0	0	0	0	0	1	18255	1306	46	2		2	ZNRF4	19	5455601	Silent	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10	1092952	5455601	53673382	48	170											
GRAMD1A	57655	mdanderson.org	37	chr19	35504213	35504213	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catcagtgctacggctcagaGctgggcctcaccagtgagga	13	12	3	2	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_020895	exon8	c.G660A	p.E220E	CTCAGAGCTGGGC		53	3	0.06	67	0	0				181	0	0				A	35504213	G	A	35504213	2	1	3	1	0	0	0	0	0	0	0	1	6787	962	34	2		2	GRAMD1A	19	35504213	Silent	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10	30048612	35504213	23624770	49	171											
ISM1	140862	broad.mit.edu;mdanderson.org	37	chr20	13260477	13260477	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgacagcaacttcctcaaccCccccagggggtgggaccata	10	16	1	0	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	ISM1	NM_080826	exon3	c.C575T	p.P192L	TCAACCCCCCCAG		56	5	0.09	54	0	0		41		0	0					T	13260477	C	T	13260477	3	4	3	1	0	0	0	0	1	0	0	0	7903	623	22	3	585	3	ISM1	20	13260477	Missense_Mutation	SNP	C	TCGA-2G-AAF1-01A-11D-A42Y-10		13260477	49765043	50	172											
RRBP1	6238	bcgsc.ca	37	chr20	17640067	17640067	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgattctgggccccctcGgccttcttgccctgattctg	9	17	3	2	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	RRBP1	.	.	.	.	CCCCTCGGCCTTC		57	7	0.12	49	3	0.0612244898		157		130	0	0				T	17640067	G	T	17640067	2	4	3	1	0	0	0	0	0	0	0	1	13729	1131	39	1		1	RRBP1	20	17640067	Silent	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10	4379590	17640067	45385453	51	173											
CXorf36	79742	mdanderson.org	37	chrX	45017126	45017126	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcgcaggagcgggctgGccaggccctacgcgcaggtg	19	13	0	0	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	.	NM_176819	exon3	c.C506A	p.A169D	GGGCTGGCCAGGC		35	3	0.09	36	0	0				7	0	0				T	45017126	G	T	45017126	3	4	3	1	0	0	0	0	1	0	0	0	4129	1203	42	2	807	2	CXorf36	23	45017126	Missense_Mutation	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10		45017126	110253434	52	174											
GRIPAP1	56850	broad.mit.edu	37	chrX	48839806	48839806	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgggacttctcttgcagcGtttccattgctagctcatcc	9	13	2	0	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	GRIPAP1	NM_020137	exon16	c.C1319A	p.T440K	TGCAGCGTTTCCA		62	3	0.05	59	2	0.0338983051		128		133	0	0				T	48839806	G	T	48839806	3	4	3	1	0	0	0	0	1	0	0	0	6829	1145	40	1	1304	1	GRIPAP1	23	48839806	Missense_Mutation	SNP	G	TCGA-2G-AAF1-01A-11D-A42Y-10	3822680	48839806	106430754	53	175											
BCORL1	63035	broad.mit.edu	37	chrX	129148078	129148078	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcagccagggacagtgctgAccccgagccagccgctggta	13	14	1	1	novel		TCGA-2G-AAF1-01A-11D-A42Y-10	TCGA-2G-AAF1-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f38df192-f4ad-456a-9d0b-99441d9cbb8e	1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f	.	BCORL1	NM_021946	exon3	c.A1330C	p.T444P	GTGCTGACCCCGA		63	16	0.25	66	15	0.2272727273		213		7	0	0				C	129148078	A	C	129148078	3	2	3	1	0	0	0	0	1	0	0	0	1385	275	10	4	1340	4	BCORL1	23	129148078	Missense_Mutation	SNP	A	TCGA-2G-AAF1-01A-11D-A42Y-10	80308272	129148078	26122482	54	176											
FAF1	11124	mdanderson.org	37	chr1	51171496	51171496	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctgagaagttcaggttgtActcccgctggacttctcggt	11	11	2	1	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_007051	exon7	c.T619C	p.Y207H	GGTTGTACTCCCG		57	3	0.05	81	1	0.012345679				158	1	0.01				G	51171496	A	G	51171496	3	3	4	1	0	0	0	0	1	0	0	0	5400	391	14	4	1385	4	FAF1	1	51171496	Missense_Mutation	SNP	A	TCGA-2G-AAF4-01A-11D-A42Y-10		51171496	198079125	1	177											
PTPN22	26191	mdanderson.org	37	chr1	114391245	114391245	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtagaccagttcatattGttcctgaagagcatcacaac	7	9	2	3	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_001193431	exon11	c.C832A	p.Q278K	CATATTGTTCCTG		34	3	0.09	50	0	0				14	0	0				T	114391245	G	T	114391245	3	4	4	1	0	0	0	0	1	0	0	0	12838	1386	48	3	1658	3	PTPN22	1	114391245	Missense_Mutation	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10	63219749	114391245	134859376	2	178											
DNM3	26052	mdanderson.org	37	chr1	171810899	171810899	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctggagctgccgcagatcGccgtggtgggcggccagagc	18	12	0	2	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_015569	exon1	c.G103A	p.A35T	CAGATCGCCGTGG		43	3	0.07	35	0	0				2	0	0				A	171810899	G	A	171810899	3	1	4	1	0	0	0	0	1	0	0	0	4700	1087	38	1	105	1	DNM3	1	171810899	Missense_Mutation	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10	57419654	171810899	77439722	3	179											
GREB1	9687	ucsc.edu	37	chr2	11720844	11720844	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tttcaggaccagcttctgatCacccctcactaaacgcagca	6	15	4	1	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	GREB1	NM_148903	exon7	c.C787T	p.H263Y	TCTGATCACCCCT		47	5	0.11	59	0	0		308		12	0	0				T	11720844	C	T	11720844	3	4	4	1	0	0	0	0	1	0	0	0	6800	826	29	3	809	3	GREB1	2	11720844	Missense_Mutation	SNP	C	TCGA-2G-AAF4-01A-11D-A42Y-10		11720844	231478529	4	180											
CREG2	200407	mdanderson.org	37	chr2	102003876	102003876	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcacagcagccaggagaggCgggtccccggccgcgccggc	17	16	0	1	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_153836	exon1	c.G44A	p.R15H	GAGAGGCGGGTCC		18	2	0.11	23	0	0				1	0	0				T	102003876	C	T	102003876	3	4	4	1	0	0	0	0	1	0	0	0	3888	768	27	1	844	1	CREG2	2	102003876	Missense_Mutation	SNP	C	TCGA-2G-AAF4-01A-11D-A42Y-10	90283032	102003876	141195497	5	181											
FMNL2	114793	mdanderson.org	37	chr2	153497328	153497328	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttctcataaatcaaagagGcagcagcaagagttaattgc	8	9	2	2	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_052905	exon25	c.G3069T	p.R1023S	AAAGAGGCAGCAG		47	3	0.06	66	0	0				143	0	0				T	153497328	G	T	153497328	3	4	4	1	0	0	0	0	1	0	0	0	5984	1194	42	2	3167	2	FMNL2	2	153497328	Missense_Mutation	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10	51493452	153497328	89702045	6	182											
FAP	2191	mdanderson.org	37	chr2	163075681	163075681	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tttcaaatagatattgttttGatagacatatgcctaaaagt	6	4	1	3	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_004460	exon8	c.C499A	p.Q167K	TGTTTTGATAGAC		38	3	0.08	60	0	0				0	0					T	163075681	G	T	163075681	3	4	4	1	0	0	0	0	1	0	0	0	5705	1299	45	3	1859	3	FAP	2	163075681	Missense_Mutation	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10	9578353	163075681	80123692	7	183											
ITGA6	3655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	173349559	173349559	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaagaagaaaatctgggctAtcctcaagagttcagtttcg	10	7	3	3	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_001079818	exon12	c.A1599G	p.L533L	TGGGCTATCCTCA		117	21	0.18	102	0	0				198	40	0.2				G	173349559	A	G	173349559	2	3	4	1	0	0	0	0	0	0	0	1	7923	436	16	4		4	ITGA6	2	173349559	Silent	SNP	A	TCGA-2G-AAF4-01A-11D-A42Y-10	10273878	173349559	69849814	8	184											
ATIC	471	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	216209567	216209568	+	Frame_Shift_Del	DEL	CT	CT	-													gtcaagtacactcagtctaaCtctgtgtgctacgccaagaa					novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	CT	CT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	ATIC	NM_004044	exon13	c.1292_1293del	p.431_431del	GTCTAACTCTGTG		114	19	0.17	116	0	0		84		691	0	0				-	216209568	CT	-	216209567	7	5	4	1	0	1	0	1	0	0	0	0	1104	564	20	0	1343	0	ATIC	2	216209567	Frame_Shift_Del	DEL	CT	TCGA-2G-AAF4-01A-11D-A42Y-10	42860008	216209567	26989806	9	185											
TMEM169	92691	broad.mit.edu	37	chr2	216965258	216965258	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaagaagtagaaacctccaCggtctaaactcccaacaact	5	14	1	2	rs142015527	bycluster;by1000genomes	TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	TMEM169	NM_001142310	exon4	c.C887T	p.T296M	CCTCCACGGTCTA		70	4	0.06	62	0	0		46		4	0	0				T	216965258	C	T	216965258	3	4	4	1	0	0	0	0	1	0	0	0	16143	536	19	1	893	1	TMEM169	2	216965258	Missense_Mutation	SNP	C	TCGA-2G-AAF4-01A-11D-A42Y-10	755691	216965258	26234115	10	186											
KIF15	56992	mdanderson.org	37	chr3	44872428	44872428	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggttgacagagaagagagcaGagtgttgatcaagaagcagg	16	4	1	6	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_020242	exon26	c.G3089T	p.R1030I	AGAGCAGAGTGTT		48	3	0.06	48	0	0				34	0	0				T	44872428	G	T	44872428	3	4	4	1	0	0	0	0	1	0	0	0	8318	942	33	3	3191	3	KIF15	3	44872428	Missense_Mutation	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10		44872428	153150002	11	187											
UMPS	7372	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	124456529	124456529	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttgaggttcttcagaaggAgggcttgaaggtcactgatg	15	5	3	4	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	UMPS	NM_000373	exon3	c.A425C	p.E142A	AGAAGGAGGGCTT		151	15	0.1	155	1	0.0064516129		43		135	33	0.24				C	124456529	A	C	124456529	3	2	4	1	0	0	0	0	1	0	0	0	17040	304	11	4	435	4	UMPS	3	124456529	Missense_Mutation	SNP	A	TCGA-2G-AAF4-01A-11D-A42Y-10	79584101	124456529	73565901	12	188											
KCNMB3	27094	mdanderson.org	37	chr3	178962476	178962476	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaggtcgattcttctctcTgaatgcttcaatttgaaaaa	7	8	4	2	rs4080958	byhapmap	TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_014407	exon3	c.A266G	p.Q89R	TCTCTCTGAATGC		177	9	0.05	181	4	0.0220994475				4	0	0				C	178962476	T	C	178962476	3	2	4	1	0	0	0	0	1	0	0	0	8119	1580	55	4	654	4	KCNMB3	3	178962476	Missense_Mutation	SNP	T	TCGA-2G-AAF4-01A-11D-A42Y-10	54505947	178962476	19059954	13	189											
DSPP	1834	bcgsc.ca	37	chr4	88537270	88537270	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacagcagtgaaagcagcgaCagcagtgacagcagcgacag	14	10	0	2	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	DSPP	NM_014208	exon5	c.C3456T	p.D1152D	CAGCGACAGCAGT		106	8	0.08	93	1	0.0107526882		174		0	0					T	88537270	C	T	88537270	2	4	4	1	0	0	0	0	0	0	0	1	4808	477	17	3		3	DSPP	4	88537270	Silent	SNP	C	TCGA-2G-AAF4-01A-11D-A42Y-10		88537270	102617006	14	190											
DPYSL3	1809	mdanderson.org	37	chr5	146777272	146777272	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagacatagtcggagaacGggctgcagggtatgaagcgg	17	6	0	3	rs373475070	alternate_allele	TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_001197294	exon12	c.C1760A	p.P587Q	GAGAACGGGCTGC		44	3	0.07	77	0	0				38	0	0				T	146777272	G	T	146777272	3	4	4	1	0	0	0	0	1	0	0	0	4774	1116	39	1	306	1	DPYSL3	5	146777272	Missense_Mutation	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10		146777272	34137988	15	191											
CAMK2A	815	mdanderson.org	37	chr5	149607840	149607840	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggctgtcatgccagggtcGcacatcttcctgggggaaag	14	10	2	0	rs375087065	alternate_allele	TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_015981	exon17	c.C1152A	p.C384X	AGGGTCGCACATC		27	3	0.11	49	0	0				0	0					T	149607840	G	T	149607840	4	4	4	1	0	0	0	0	0	1	0	0	2617	1079	38	1	329	1	CAMK2A	5	149607840	Nonsense_Mutation	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10	2830568	149607840	31307420	16	192											
CUL9	23113	mdanderson.org	37	chr6	43156418	43156418	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaggaggtcactgagcgGgaccaccctctggtccgtcc	15	13	2	1	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	CUL9,colon,carcinoma,+2,1	CUL9	NM_015089	exon8	c.G2145T	p.R715R	TGAGCGGGACCAC		79	5	0.06	65	0	0		2	1	5	0	0				T	43156418	G	T	43156418	2	4	4	1	0	0	0	0	0	0	0	1	4084	1219	43	3		3	CUL9	6	43156418	Silent	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10		43156418	127958649	17	193											
RAET1L	154064	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	150346542	150346542	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgtctcgcctagcccgggaCcagccgaacagcaggaacag	12	16	1	0	rs200401216	bycluster;by1000genomes	TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_130900	exon1	c.G66C	p.W22C	CCGGGACCAGCCG		75	6	0.08	48	0	0	0.001			0	0					G	150346542	C	G	150346542	3	3	4	1	0	0	0	0	1	0	0	0	13052	508	18	5	689	5	RAET1L	6	150346542	Missense_Mutation	SNP	C	TCGA-2G-AAF4-01A-11D-A42Y-10	107190124	150346542	20768525	18	194											
PMS2	5395	broad.mit.edu	37	chr7	6026444	6026444	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gattttctccaggacaaatcTttgccctaaacttcctgtaa	5	11	2	0	rs267608167		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	PMS2	NM_000535	exon11	c.A1952G	p.K651R	CAAATCTTTGCCC		520	4	0.01	371	1	0.0026954178		88		45	1	0.02				C	6026444	T	C	6026444	3	2	4	1	0	0	0	0	1	0	0	0	12190	1609	56	4	656	4	PMS2	7	6026444	Missense_Mutation	SNP	T	TCGA-2G-AAF4-01A-11D-A42Y-10		6026444	153112219	19	195											
CUX1	1523	mdanderson.org	37	chr7	101877521	101877521	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaacggatggagaagaaagGtaagtctccctgccccgccc	12	12	1	2	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_001202543	exon22	c.3655+1G>T	.	AGAAAGGTAAGTC		50	3	0.06	46	0	0				0	0					T	101877521	G	T	101877521	5	4	4	1	0	0	0	0	0	0	1	0	4087	1275	44	3	3776	3	CUX1	7	101877521	Splice_Site	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10	95851077	101877521	57261142	20	196											
NEFL	4747	broad.mit.edu	37	chr8	24814108	24814108	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggggagagagggaagggggAggatggatggctgtgtgcgg	25	2	0	1	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	NEFL	.	.	.	.	AGGGGGAGGATGG		48	3	0.06	48	0	0		47		6	0	0				G	24814108	A	G	24814108	1	3	4	0	1	0	0	0	0	0	0	0	10361	319	11	4		4	NEFL	8	24814108	RNA	SNP	A	TCGA-2G-AAF4-01A-11D-A42Y-10		24814108	121549914	21	197											
FGFR1	2260	mdanderson.org	37	chr8	38273576	38273576	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ctccacgatgacatacaaggGacctgcaggcacaggagaag	12	11	0	2	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_001174067	exon14	c.C1759A	p.P587T	ACAAGGGACCTGC		38	3	0.08	34	0	0				192	0	0				T	38273576	G	T	38273576	3	4	4	1	0	0	0	0	1	0	0	0	5895	1174	41	3	826	3	FGFR1	8	38273576	Missense_Mutation	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10	13459468	38273576	108090446	22	198											
PCMTD1	115294	bcgsc.ca	37	chr8	52733110	52733110	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgaggaataagctgattaCccacaaatacgtaagtgtta	9	7	0	2	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	PCMTD1	NM_052937	exon6	c.G875A	p.G292D	TGATTACCCACAA		178	10	0.06	156	2	0.0128205128		73		51	0	0				T	52733110	C	T	52733110	3	4	4	1	0	0	0	0	1	0	0	0	11632	507	18	3	202	3	PCMTD1	8	52733110	Missense_Mutation	SNP	C	TCGA-2G-AAF4-01A-11D-A42Y-10	14459534	52733110	93630912	23	199			1	2		2	2	35	C		5.820856e-05
PCMTD1	115294	bcgsc.ca	37	chr8	52733144	52733144	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgttaattctctgtttaaCtctctttcttttccttttgg	5	8	3	0	rs200246241		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	PCMTD1	NM_052937	exon6	c.G841A	p.V281I	GTTTAACTCTCTT		169	11	0.07	146	4	0.0273972603		73		79	0	0				T	52733144	C	T	52733144	3	4	4	1	0	0	0	0	1	0	0	0	11632	565	20	3	236	3	PCMTD1	8	52733144	Missense_Mutation	SNP	C	TCGA-2G-AAF4-01A-11D-A42Y-10	34	52733144	93630878	24	200			1	2		2	2	35	C		5.820856e-05
PKHD1L1	93035	mdanderson.org	37	chr8	110374854	110374854	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atttggggcctctgtgggctGctcctgtgtgccgcggatcc	15	12	1	0	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_177531	exon1	c.G45A	p.L15L	TGGGCTGCTCCTG		83	4	0.05	110	0	0				0	0					A	110374854	G	A	110374854	2	1	4	1	0	0	0	0	0	0	0	1	12019	1306	46	2		2	PKHD1L1	8	110374854	Silent	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10	57641710	110374854	35989168	25	201											
AQP7	364	bcgsc.ca	37	chr9	33385740	33385740	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	catatcctgtgttcatgccaAgggacaccccgatgatgacc	9	13	1	2	rs201773300		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	AQP7	NM_001170	exon7	c.T650A	p.L217H	ATGCCAAGGGACA		30	7	0.23	33	0	0		58		0	0					T	33385740	A	T	33385740	3	4	4	1	0	0	0	0	1	0	0	0	828	72	3	5	386	5	AQP7	9	33385740	Missense_Mutation	SNP	A	TCGA-2G-AAF4-01A-11D-A42Y-10		33385740	107827691	26	202											
TMEM8B	51754	broad.mit.edu;mdanderson.org	37	chr9	35846298	35846298	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtcagtgccaccaccagGgttgccaggctgcgaatccc	11	15	2	0	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	TMEM8B	NM_001042590	exon8	c.G417T	p.R139S	CACCAGGGTTGCC		78	4	0.05	96	0	0		53		10	0	0				T	35846298	G	T	35846298	3	4	4	1	0	0	0	0	1	0	0	0	16274	1223	43	3	427	3	TMEM8B	9	35846298	Missense_Mutation	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10	2460558	35846298	105367133	27	203											
FKBP15	23307	mdanderson.org	37	chr9	115955813	115955813	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actgagggagttagatttggTacgaagagctggctccctga	14	7	0	4	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_015258	exon11	c.A1024G	p.T342A	ATTTGGTACGAAG		58	3	0.05	81	0	0				21	1	0.05				C	115955813	T	C	115955813	3	2	4	1	0	0	0	0	1	0	0	0	5937	1638	57	4	2707	4	FKBP15	9	115955813	Missense_Mutation	SNP	T	TCGA-2G-AAF4-01A-11D-A42Y-10	80109515	115955813	25257618	28	204											
SEC16A	9919	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	139360565	139360565	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgtaggaaccggcagccacAttgtggcttctgtaaatctg	11	10	2	0	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	SEC16A	NM_014866	exon8	c.T4152C	p.N1384N	AGCCACATTGTGG		42	4	0.1	61	0	0		249		49	5	0.1				G	139360565	A	G	139360565	2	3	4	1	0	0	0	0	0	0	0	1	14039	214	8	4		4	SEC16A	9	139360565	Silent	SNP	A	TCGA-2G-AAF4-01A-11D-A42Y-10	23404752	139360565	1852866	29	205											
ITIH5	80760	mdanderson.org	37	chr10	7614301	7614301	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttattatagttccaggatgCtggcaaaaggaaatttcatg	9	5	1	0	rs141124086	bycluster;by1000genomes	TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_001001851	exon12	c.G2093A	p.S698N	AGGATGCTGGCAA		44	3	0.07	38	0	0	0			0	0					T	7614301	C	T	7614301	3	4	4	1	0	0	0	0	1	0	0	0	7950	797	28	2	870	2	ITIH5	10	7614301	Missense_Mutation	SNP	C	TCGA-2G-AAF4-01A-11D-A42Y-10		7614301	127920446	30	206											
ZFYVE27	118813	broad.mit.edu	37	chr10	99498419	99498419	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggatgcaggtgatggtgttcGatacttgctcaggtacagac	14	7	1	2	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	ZFYVE27	NM_001002261	exon1	c.G185A	p.R62Q	GTGTTCGATACTT		109	4	0.04	135	0	0		31		20	0	0				A	99498419	G	A	99498419	3	1	4	1	0	0	0	0	1	0	0	0	17726	1058	37	1	187	1	ZFYVE27	10	99498419	Missense_Mutation	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10	91884118	99498419	36036328	31	207											
MUC2	4583	mdanderson.org	37	chr11	1082661	1082661	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgccctgtcctcctacgcgcGcgcctgcaccgccaagggcg	12	20	0	0	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_002457	exon15	c.G1910A	p.R637H	ACGCGCGCGCCTG		29	3	0.1	56	0	0				0	0					A	1082661	G	A	1082661	3	1	4	1	0	0	0	0	1	0	0	0	10022	1087	38	1	1968	1	MUC2	11	1082661	Missense_Mutation	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10		1082661	133923855	32	208											
CTNND1	1500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	57576927	57576927	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	attgagaagctggtgttgatCaacaaatcagggtgagctta	12	5	2	3	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_001085458	exon15	c.C2424G	p.I808M	GTTGATCAACAAA		55	14	0.25	85	0	0				136	63	0.46				G	57576927	C	G	57576927	3	3	4	1	0	0	0	0	1	0	0	0	4043	816	29	5	2474	5	CTNND1	11	57576927	Missense_Mutation	SNP	C	TCGA-2G-AAF4-01A-11D-A42Y-10	56494266	57576927	77429589	33	209											
VWCE	220001	mdanderson.org	37	chr11	61042028	61042028	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaacacagccccgtctgcGtaccaccggccgtggaaata	10	15	1	1	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_152718	exon12	c.C1524T	p.Y508Y	GTCTGCGTACCAC		47	3	0.06	85	0	0				8	0	0				A	61042028	G	A	61042028	2	1	4	1	0	0	0	0	0	0	0	1	17304	1140	40	1		1	VWCE	11	61042028	Silent	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10	3465101	61042028	73964488	34	210											
LTBP3	4054	broad.mit.edu	37	chr11	65313978	65313978	+	Frame_Shift_Del	DEL	G	G	-													aggtgcagcggaaggagcccGggaggttctcgcaccagcca					novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	LTBP3	NM_001130144	exon16	c.2288delC	p.P763fs	GAGCCCGGGAGGT		6	2	0.33	17	0	0		55		13	0	0				-	65313978	G	-	65313978	7	5	4	1	0	1	0	1	0	0	0	0	9119	1116	39	0	1675	0	LTBP3	11	65313978	Frame_Shift_Del	DEL	G	TCGA-2G-AAF4-01A-11D-A42Y-10	4271950	65313978	69692538	35	211											
PDE2A	5138	mdanderson.org	37	chr11	72288474	72288474	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cattgatgggggccctagtgCcatccagatcaggcacctcg	12	13	1	2	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	PDE2A_ENST00000544570,NS,carcinoma,-1,3	PDE2A_ENST00000544570	NM_002599	exon31	c.G2780C	p.G927A	CTAGTGCCATCCA		48	3	0.06	57	0	0		-1	3	52	0	0				G	72288474	C	G	72288474	3	3	4	1	0	0	0	0	1	0	0	0	11682	739	26	5	49	5	PDE2A	11	72288474	Missense_Mutation	SNP	C	TCGA-2G-AAF4-01A-11D-A42Y-10	6974496	72288474	62718042	36	212											
TECTA	7007	ucsc.edu;bcgsc.ca	37	chr11	120996448	120996448	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaccccactgcttttgtGcacagctgcgtgtatgacct	11	12	0	1	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	TECTA	NM_005422	exon7	c.G1641T	p.V547V	TTTTGTGCACAGC		41	4	0.1	82	0	0		329		0	0					T	120996448	G	T	120996448	2	4	4	1	0	0	0	0	0	0	0	1	15805	1306	46	2		2	TECTA	11	120996448	Silent	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10	48707974	120996448	14010068	37	213											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	25380276	25380276	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcattgcactgtactcctctTgacctgctgtgtcgagaata	8	11	2	2	rs121913240	bycluster	TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	KRAS_ENST00000256078,colon,carcinoma,+1,429	KRAS_ENST00000256078	NM_004985	exon3	c.A182T	p.Q61L	TCCTCTTGACCTG		132	19	0.14	124	0	0		1	429	108	15	0.14				A	25380276	T	A	25380276	3	1	4	1	0	0	0	0	1	0	0	0	8480	1812	63	5	520	5	KRAS	12	25380276	Missense_Mutation	SNP	T	TCGA-2G-AAF4-01A-11D-A42Y-10		25380276	108471619	38	214											
PA2G4	5036	bcgsc.ca;mdanderson.org	37	chr12	56500421	56500421	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agctcaggtgtgtcggtactGagcctgtgtgagaaaggtga	16	6	1	3	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	PA2G4	NM_006191	exon2	c.G138T	p.L46L	GGTACTGAGCCTG		76	5	0.07	53	0	0		24		814	0	0				T	56500421	G	T	56500421	2	4	4	1	0	0	0	0	0	0	0	1	11407	1277	45	3		3	PA2G4	12	56500421	Silent	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10	31120145	56500421	77351474	39	215											
SIX6	4990	mdanderson.org	37	chr14	60976369	60976369	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agttcaccaaggagtcgcacGccaagctgcaggcgctgtgg	14	12	1	0	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	SIX6,colon,carcinoma,0,1	SIX6	NM_007374	exon1	c.G253A	p.A85T	TCGCACGCCAAGC		48	4	0.08	49	0	0		0	1	0	0					A	60976369	G	A	60976369	3	1	4	1	0	0	0	0	1	0	0	0	14405	1087	38	1	255	1	SIX6	14	60976369	Missense_Mutation	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10		60976369	46373171	40	216											
SYNE2	23224	broad.mit.edu	37	chr14	64675556	64675556	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgtcctactgcacgactcCgatgcctgtgcaaatgagac	10	13	0	1	rs201056822	by1000genomes;alternate_allele	TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	SYNE2	NM_182914	exon101	c.C18282A	p.S6094S	CGACTCCGATGCC		74	3	0.04	105	1	0.0095238095		577		225	0	0				A	64675556	C	A	64675556	2	1	4	1	0	0	0	0	0	0	0	1	15502	639	23	1		1	SYNE2	14	64675556	Silent	SNP	C	TCGA-2G-AAF4-01A-11D-A42Y-10	3699187	64675556	42673984	41	217											
CILP	8483	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr15	65490079	65490079	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgagatagggctgagggaCgccaattgcatttgggttga	16	5	0	3	rs376060973		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	CILP	NM_003613	exon9	c.G2545A	p.V849I	GAGGGACGCCAAT		29	4	0.14	19	0	0		124		10	1	0.1				T	65490079	C	T	65490079	3	4	4	1	0	0	0	0	1	0	0	0	3451	536	19	1	1013	1	CILP	15	65490079	Missense_Mutation	SNP	C	TCGA-2G-AAF4-01A-11D-A42Y-10		65490079	37041313	42	218											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	30749732	30749732	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagtgccagcccgggaagcCcgtctgtccgcagcatgtca	12	15	2	0	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	SRCAP,NS,carcinoma,-1,1	SRCAP	NM_006662	exon34	c.C8371A	p.P2791T	GGAAGCCCGTCTG		65	11	0.17	56	0	0		-1	1	142	32	0.23				A	30749732	C	A	30749732	3	1	4	1	0	0	0	0	1	0	0	0	15190	623	22	3	8497	3	SRCAP	16	30749732	Missense_Mutation	SNP	C	TCGA-2G-AAF4-01A-11D-A42Y-10		30749732	59605021	43	219											
NEURL4	84461	mdanderson.org	37	chr17	7226392	7226392	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcccagcgcatccaggtcaCacccataattgttgcgcatc	8	15	1	0	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_001005408	exon15	c.G2468A	p.C823Y	AGGTCACACCCAT		48	3	0.06	70	0	0				22	0	0				T	7226392	C	T	7226392	3	4	4	1	0	0	0	0	1	0	0	0	10393	478	17	3	2280	3	NEURL4	17	7226392	Missense_Mutation	SNP	C	TCGA-2G-AAF4-01A-11D-A42Y-10		7226392	73968818	44	220											
CNP	1267	mdanderson.org	37	chr17	40125872	40125872	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catcttcacggggtactacgGgaaaggcaaacctgtgccca	11	12	2	0	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_033133	exon4	c.G1196T	p.G399V	ACTACGGGAAAGG		37	3	0.08	32	0	0				99	0	0				T	40125872	G	T	40125872	3	4	4	1	0	0	0	0	1	0	0	0	3649	1232	43	3	1210	3	CNP	17	40125872	Missense_Mutation	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10	32899480	40125872	41069338	45	221											
SLC4A1	6521	mdanderson.org	37	chr17	42330687	42330687	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tactaccagcagcaggtccaGgtggaagccggagcccttga	13	12	0	1	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_000342	exon17	c.C2110A	p.L704M	GGTCCAGGTGGAA		55	3	0.05	63	0	0				1	0	0				T	42330687	G	T	42330687	3	4	4	1	0	0	0	0	1	0	0	0	14704	991	35	3	641	3	SLC4A1	17	42330687	Missense_Mutation	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10	2204815	42330687	38864523	46	222											
RGS9	8787	mdanderson.org	37	chr17	63221584	63221584	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggccagcagctgccacgattGaaatccaagagagtagcaaa	11	10	0	2	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	RGS9,NS,carcinoma,0,1	RGS9	NM_003835	exon18	c.G1872T	p.L624F	ACGATTGAAATCC		17	2	0.12	21	0	0		0	1	0	0					T	63221584	G	T	63221584	3	4	4	1	0	0	0	0	1	0	0	0	13362	1281	45	3	1997	3	RGS9	17	63221584	Missense_Mutation	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10	20890897	63221584	17973626	47	223											
AFMID	125061	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr17	76198677	76198677	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atttacttccccgacgagtcGtctgaaggttgtcggtgaag	12	9	1	2	rs189378031	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	AFMID,NS,carcinoma,+1,1	AFMID	NM_001145526	exon3	c.G252T	p.S84S	CGAGTCGTCTGAA		67	8	0.12	83	0	0		1	1	17	4	0.24				T	76198677	G	T	76198677	2	4	4	1	0	0	0	0	0	0	0	1	361	1132	40	1		1	AFMID	17	76198677	Silent	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10	12977093	76198677	4996533	48	224											
MUC16	94025	mdanderson.org	37	chr19	9025604	9025604	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctcacctgagcaaggtcaAtctgcagccagagtacagag	10	11	3	3	rs200791776		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_024690	exon15	c.T36850C	p.L12284L	AGGTCAATCTGCA		91	7	0.08	119	3	0.025210084				0	0					G	9025604	A	G	9025604	2	3	4	1	0	0	0	0	0	0	0	1	10020	98	4	4		4	MUC16	19	9025604	Silent	SNP	A	TCGA-2G-AAF4-01A-11D-A42Y-10		9025604	50103379	49	225											
EMILIN3	90187	mdanderson.org	37	chr20	39993681	39993681	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagtgcacttacgtgactGtcccggggcacttgggcccc	14	13	0	1	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	.	NM_052846	exon2	c.C284A	p.T95K	GTGACTGTCCCGG		49	3	0.06	70	0	0				0	0					T	39993681	G	T	39993681	3	4	4	1	0	0	0	0	1	0	0	0	5123	1377	48	3	2028	3	EMILIN3	20	39993681	Missense_Mutation	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10		39993681	23031839	50	226											
DEPDC5	9681	broad.mit.edu	37	chr22	32302245	32302245	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caagttctcagggcagcagcGgcggcggcggaactccacca	14	14	1	0	rs370366925		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	DEPDC5_ENST00000535622,NS,carcinoma,0,1	DEPDC5	NM_001242896	exon43	c.G4574A	p.R1525Q	AGCAGCGGCGGCG		303	5	0.02	221	0	0		266	1	52	0	0				A	32302245	G	A	32302245	3	1	4	1	0	0	0	0	1	0	0	0	4470	1116	39	1	4731	1	DEPDC5	22	32302245	Missense_Mutation	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10		32302245	19002321	51	227											
RBM10	8241	broad.mit.edu	37	chrX	47030582	47030582	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggaggaggaggaggaGgatgaggaggaggaggagaa	25	0	0	2	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	RBM10	NM_001204468	exon4	c.G552T	p.E184D	GGAGGAGGATGAG		59	3	0.05	68	1	0.0147058824		117		13	0	0				T	47030582	G	T	47030582	3	4	4	1	0	0	0	0	1	0	0	0	13162	991	35	3	367	3	RBM10	23	47030582	Missense_Mutation	SNP	G	TCGA-2G-AAF4-01A-11D-A42Y-10		47030582	108239978	52	228											
FGD1	2245	broad.mit.edu	37	chrX	54496515	54496515	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tccttctcttcctcctcctcCtcgtcgtcctcctcctccag	3	22	1	0	novel		TCGA-2G-AAF4-01A-11D-A42Y-10	TCGA-2G-AAF4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0b199d9a-a374-40f2-b783-8c912c10f786	b9650297-8941-4502-85c8-575ad0558122	.	FGD1	NM_004463	exon4	c.G1035C	p.E345D	CTCCTCCTCGTCG		141	4	0.03	133	0	0		99		187	0	0				G	54496515	C	G	54496515	3	3	4	1	0	0	0	0	1	0	0	0	5864	680	24	5	1910	5	FGD1	23	54496515	Missense_Mutation	SNP	C	TCGA-2G-AAF4-01A-11D-A42Y-10	7465933	54496515	100774045	53	229											
CSF3R	1441	mdanderson.org	37	chr1	36939198	36939198	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtccaggatggagtcccCttgggtctgacagttgcccc	13	13	1	1	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_156039	exon6	c.G511T	p.G171W	AGTCCCCTTGGGT		39	3	0.08	46	0	0				20	0	0				A	36939198	C	A	36939198	3	1	5	1	0	0	0	0	1	0	0	0	3962	681	24	3	2237	3	CSF3R	1	36939198	Missense_Mutation	SNP	C	TCGA-2G-AAF6-01A-11D-A42Y-10		36939198	212311423	1	230											
COPA	1314	hgsc.bcm.edu;bcgsc.ca	37	chr1	160264296	160264298	+	In_Frame_Del	DEL	TCT	TCT	-													gctcaggagggagctccagaTcttcttctacatcccagcca					novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	TCT	TCT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	COPA	NM_001098398	exon25	c.2680_2682del	p.894_894del	TCCAGATCTTCTT		231	46	0.2	189	0	0		181		629	0	0				-	160264298	TCT	-	160264296	7	5	5	1	0	1	0	1	0	0	0	0	3750	1435	50	0	1056	0	COPA	1	160264296	In_Frame_Del	DEL	TCT	TCGA-2G-AAF6-01A-11D-A42Y-10	123325098	160264296	88986325	2	231											
FMO1	2326	mdanderson.org	37	chr1	171251463	171251463	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctcggtgggctgttcgaGtcctgaaaggtaagtataag	14	6	0	1	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_002021	exon7	c.G1174T	p.V392F	GTTCGAGTCCTGA		127	5	0.04	103	0	0				2	0	0				T	171251463	G	T	171251463	3	4	5	1	0	0	0	0	1	0	0	0	5986	1029	36	3	1196	3	FMO1	1	171251463	Missense_Mutation	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10	10987167	171251463	77999158	3	232											
ASXL2	55252	mdanderson.org	37	chr2	25965421	25965421	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctgaattaaatctctgGctagggtcttttcatcaaat	7	9	4	1	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_018263	exon12	c.C3785A	p.A1262D	TCTCTGGCTAGGG		86	4	0.05	75	0	0				64	0	0				T	25965421	G	T	25965421	3	4	5	1	0	0	0	0	1	0	0	0	1066	1203	42	2	526	2	ASXL2	2	25965421	Missense_Mutation	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10		25965421	217233952	4	233											
SFTPB	6439	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr2	85890852	85890852	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaccagctggggcagcatgCggcccagcagcgtgtcgagc	16	13	0	1	rs371267944		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_198843	exon8	c.G827A	p.R276H	AGCATGCGGCCCA		96	5	0.05	61	0	0				1	0	0				T	85890852	C	T	85890852	3	4	5	1	0	0	0	0	1	0	0	0	14244	768	27	1	370	1	SFTPB	2	85890852	Missense_Mutation	SNP	C	TCGA-2G-AAF6-01A-11D-A42Y-10	59925431	85890852	157308521	5	234											
FER1L5	90342	mdanderson.org	37	chr2	97361797	97361797	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctccccgcacagcgctgtctGagaagaagcaccaagacgta	10	14	1	3	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	FER1L5,right_upper_lobe,carcinoma,-2,1	FER1L5	NM_001113382	exon36	c.G4147T	p.E1383X	CTGTCTGAGAAGA		47	3	0.06	34	0	0		-2	1	0	0					T	97361797	G	T	97361797	4	4	5	1	0	0	0	0	0	1	0	0	5846	1291	45	3	4289	3	FER1L5	2	97361797	Nonsense_Mutation	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10	11470945	97361797	145837576	6	235											
IMP4	92856	mdanderson.org	37	chr2	131103261	131103261	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggtcgttcacgagcatcGgggcacacctggtaaggccg	15	12	1	0	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_033416	exon5	c.G428T	p.R143L	AGCATCGGGGCAC		59	3	0.05	46	0	0				716	0	0				T	131103261	G	T	131103261	3	4	5	1	0	0	0	0	1	0	0	0	7763	1116	39	1	446	1	IMP4	2	131103261	Missense_Mutation	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10	33741464	131103261	112096112	7	236											
CCDC150	284992	broad.mit.edu	37	chr2	197511227	197511227	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttggattttggtgaaaaaAggtaacaaaaatgaactaca	9	3	0	2	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	CCDC150	NM_001080539	exon2	c.A175G	p.R59G	GAAAAAAGGTAAC		138	3	0.02	125	0	0		96		1	0	0				G	197511227	A	G	197511227	5	3	5	1	0	0	0	0	0	0	1	0	2803	86	3	4	181	4	CCDC150	2	197511227	Splice_Site	SNP	A	TCGA-2G-AAF6-01A-11D-A42Y-10	66407966	197511227	45688146	8	237											
CADM2	253559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	86010725	86010725	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcctgaacaaaacggatAatggtacatatcgatgtgaa	8	6	0	2	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	CADM2_ENST00000383699,NS,lymphoid_neoplasm,-2,2	CADM2_ENST00000383699	NM_001167675	exon8	c.A898G	p.N300D	ACGGATAATGGTA		119	18	0.15	109	0	0		-2	2	1	0	0				G	86010725	A	G	86010725	3	3	5	1	0	0	0	0	1	0	0	0	2585	362	13	4	968	4	CADM2	3	86010725	Missense_Mutation	SNP	A	TCGA-2G-AAF6-01A-11D-A42Y-10		86010725	112011705	9	238											
DHFRL1	200895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	93780000	93780000	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tggcttccttataaacagaaCtgccaccaactatccaaatc	4	13	0	1	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_001195643	exon2	c.G356C	p.S119T	ACAGAACTGCCAC		177	27	0.15	184	0	0				10	3	0.3				G	93780000	C	G	93780000	3	3	5	1	0	0	0	0	1	0	0	0	4510	565	20	5	211	5	DHFRL1	3	93780000	Missense_Mutation	SNP	C	TCGA-2G-AAF6-01A-11D-A42Y-10	7769275	93780000	104242430	10	239											
ALDH1L1	10840	mdanderson.org	37	chr3	125872417	125872417	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcgttgagttgaaaaatGtcagtttctgtcaaggggag	13	5	4	2	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_001270364	exon7	c.C758A	p.T253K	AAAAATGTCAGTT		91	5	0.05	63	1	0.0158730159				0	0					T	125872417	G	T	125872417	3	4	5	1	0	0	0	0	1	0	0	0	491	1377	48	3	2048	3	ALDH1L1	3	125872417	Missense_Mutation	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10	32092417	125872417	72150013	11	240											
EIF4G1	1981	mdanderson.org	37	chr3	184042695	184042695	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaggacgcctgaaggaagaGctggaagaggctcgggacat	17	8	0	3	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_001194947	exon18	c.G2670T	p.E890D	GGAAGAGCTGGAA		49	3	0.06	39	0	0				666	0	0				T	184042695	G	T	184042695	3	4	5	1	0	0	0	0	1	0	0	0	5064	962	34	2	2711	2	EIF4G1	3	184042695	Missense_Mutation	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10	58170278	184042695	13979735	12	241											
CCNI2	645121	mdanderson.org	37	chr5	132084162	132084162	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggccgcctcctgatttcaGtgaaggtagggaggcctctg	14	10	2	2	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	CCNI2,NS,carcinoma,-2,1	CCNI2	NM_001039780	exon2	c.G553T	p.V185L	ATTTCAGTGAAGG		54	4	0.07	69	0	0		-2	1	33	0	0				T	132084162	G	T	132084162	3	4	5	1	0	0	0	0	1	0	0	0	2949	1029	36	3	559	3	CCNI2	5	132084162	Missense_Mutation	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10		132084162	48831098	13	242											
ZBTB9	221504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	33424120	33424120	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcggccttttggctgtggcAtctgcaacaagcgcttcaag	11	11	2	0	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_152735	exon2	c.A1243G	p.I415V	TGTGGCATCTGCA		102	23	0.23	72	0	0				170	51	0.3				G	33424120	A	G	33424120	3	3	5	1	0	0	0	0	1	0	0	0	17616	217	8	4	1245	4	ZBTB9	6	33424120	Missense_Mutation	SNP	A	TCGA-2G-AAF6-01A-11D-A42Y-10		33424120	137690947	14	243											
TNFRSF21	27242	mdanderson.org	37	chr6	47277201	47277201	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggctcggcgggcgatgCggctgcaggaggcgagggcg	22	10	0	0	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_014452	exon1	c.G47A	p.R16H	GCGATGCGGCTGC		18	3	0.17	12	0	0				71	1	0.01				T	47277201	C	T	47277201	3	4	5	1	0	0	0	0	1	0	0	0	16354	768	27	1	1944	1	TNFRSF21	6	47277201	Missense_Mutation	SNP	C	TCGA-2G-AAF6-01A-11D-A42Y-10	13853081	47277201	123837866	15	244											
C6orf70	55780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	170159980	170159980	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcaggattgggtcagttaCtgaagagttaccttcaaaac	11	8	2	2	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_018341	exon7	c.C652A	p.L218M	CAGTTACTGAAGA		80	17	0.21	67	0	0				61	16	0.26				A	170159980	C	A	170159980	3	1	5	1	0	0	0	0	1	0	0	0	2385	564	20	3	678	3	C6orf70	6	170159980	Missense_Mutation	SNP	C	TCGA-2G-AAF6-01A-11D-A42Y-10	122882779	170159980	955087	16	245											
RNF216	54476	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	5781139	5781139	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgctctgatctggggttgAcaatgtcatttgctgcttgg	12	8	4	2	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	RNF216	NM_207111	exon4	c.T509A	p.V170D	GGGTTGACAATGT		261	50	0.19	185	2	0.0108108108		71		329	76	0.23				T	5781139	A	T	5781139	3	4	5	1	0	0	0	0	1	0	0	0	13531	275	10	5	2318	5	RNF216	7	5781139	Missense_Mutation	SNP	A	TCGA-2G-AAF6-01A-11D-A42Y-10		5781139	153357524	17	246											
C7orf26	79034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	6634134	6634134	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gactactgctgtttggtgccGggatccattcagacgctgaa	12	10	1	2	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_024067	exon3	c.G483T	p.P161P	GGTGCCGGGATCC		125	20	0.16	89	0	0				404	80	0.2				T	6634134	G	T	6634134	2	4	5	1	0	0	0	0	0	0	0	1	2397	1103	39	1		1	C7orf26	7	6634134	Silent	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10	852995	6634134	152504529	18	247											
ZNF680	340252	ucsc.edu	37	chr7	63981631	63981631	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctagtaaggtgtgaggaccGgttaaaagctttgccacatt	11	7	1	1	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	ZNF680,NS,carcinoma,+1,1	ZNF680	NM_178558	exon4	c.C1501T	p.R501W	AGGACCGGTTAAA		180	1	0.01	132	0	0		58	1	105	24	0.23				A	63981631	G	A	63981631	3	1	5	1	0	0	0	0	1	0	0	0	18142	1115	39	1	95	1	ZNF680	7	63981631	Missense_Mutation	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10	57347497	63981631	95157032	19	248											
CASD1	64921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr7	94167043	94167043	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcttcattagaaatactttTacaatctttctgcaaacttg	4	8	4	1	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_022900	exon9	c.T1103G	p.L368X	TACTTTTACAATC		172	39	0.23	99	0	0				67	11	0.16				G	94167043	T	G	94167043	4	3	5	1	0	0	0	0	0	1	0	0	2682	1764	61	4	1137	4	CASD1	7	94167043	Nonsense_Mutation	SNP	T	TCGA-2G-AAF6-01A-11D-A42Y-10	30185412	94167043	64971620	20	249											
EPHB4	2050	hgsc.bcm.edu;broad.mit.edu	37	chr7	100421432	100421432	+	Frame_Shift_Del	DEL	C	C	-													tggcgtacacgtggacggcgCcccgccgtgggacccaacct					novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	EPHB4,NS,carcinoma,0,1	EPHB4	NM_004444	exon3	c.246delC	p.G82fs	ACGGCGCCCCGCC		72	11	0.15	48	0	0		106		300	0	0				-	100421432	C	-	100421432	7	5	5	1	0	1	0	1	0	0	0	0	5205	739	26	0	2778	0	EPHB4	7	100421432	Frame_Shift_Del	DEL	C	TCGA-2G-AAF6-01A-11D-A42Y-10	6254389	100421432	58717231	21	250											
XKR6	286046	mdanderson.org	37	chr8	10755923	10755923	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atagtataagagcatcattgCgatcccagccacaaagctaa	7	10	1	1	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	XKR6,colon,carcinoma,0,1	XKR6	NM_173683	exon3	c.G1465A	p.A489T	TCATTGCGATCCC		68	4	0.06	40	0	0		0	1	0	0					T	10755923	C	T	10755923	3	4	5	1	0	0	0	0	1	0	0	0	17494	768	27	1	464	1	XKR6	8	10755923	Missense_Mutation	SNP	C	TCGA-2G-AAF6-01A-11D-A42Y-10		10755923	135608099	22	251											
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	110498968	110498968	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aacatcaaaatagttggtgaAgattaccccggttggtctga	10	7	2	3	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_177531	exon59	c.A9798T	p.E3266D	TGGTGAAGATTAC		287	47	0.16	195	0	0				0	0					T	110498968	A	T	110498968	3	4	5	1	0	0	0	0	1	0	0	0	12019	69	3	5	10032	5	PKHD1L1	8	110498968	Missense_Mutation	SNP	A	TCGA-2G-AAF6-01A-11D-A42Y-10	99743045	110498968	35865054	23	252											
RAD21	5885	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	117861253	117861254	+	Frame_Shift_Del	DEL	CT	CT	-													ttcctgatcttgatcgccccCtgatgcatcttcatcctgaa					novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	CT	CT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	RAD21	NM_006265	exon13	c.1636_1637del	p.546_546del	CGCCCCCTGATGC		162	33	0.2	192	0	0		95		563	164	0.29				-	117861254	CT	-	117861253	7	5	5	1	0	1	0	1	0	0	0	0	13032	681	24	0	267	0	RAD21	8	117861253	Frame_Shift_Del	DEL	CT	TCGA-2G-AAF6-01A-11D-A42Y-10	7362285	117861253	28502769	24	253											
PHYH	5264	hgsc.bcm.edu	37	chr10	13330436	13330436	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caaccagacagccgttgttcCggctgatgtgctccatcgcc	10	15	0	2	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	PHYH,NS,carcinoma,-1,2	PHYH	NM_006214	exon6	c.G602A	p.R201Q	TTGTTCCGGCTGA		72	3	0.04	73	1	0.0136986301		-1	2	73	0	0				T	13330436	C	T	13330436	3	4	5	1	0	0	0	0	1	0	0	0	11911	652	23	1	430	1	PHYH	10	13330436	Missense_Mutation	SNP	C	TCGA-2G-AAF6-01A-11D-A42Y-10		13330436	122204311	25	254											
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	55583018	55583018	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agctgacttgtgagcctcaaTagtattggaagaaaagggca	12	6	1	3	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_001142763	exon35	c.A4489G	p.I1497V	CCTCAATAGTATT		94	24	0.26	88	0	0				0	0					C	55583018	T	C	55583018	3	2	5	1	0	0	0	0	1	0	0	0	11557	1406	49	4	3009	4	PCDH15	10	55583018	Missense_Mutation	SNP	T	TCGA-2G-AAF6-01A-11D-A42Y-10	42252582	55583018	79951729	26	255											
NPFFR1	64106	mdanderson.org	37	chr10	72014845	72014845	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggccccactgctagggccCgactcagagggcagcccgga	16	15	1	1	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_022146	exon4	c.G1161A	p.S387S	AGGGCCCGACTCA		14	2	0.14	12	0	0				0	0					T	72014845	C	T	72014845	2	4	5	1	0	0	0	0	0	0	0	1	10623	639	23	1		1	NPFFR1	10	72014845	Silent	SNP	C	TCGA-2G-AAF6-01A-11D-A42Y-10	16431827	72014845	63519902	27	256											
ZMIZ1	57178	mdanderson.org	37	chr10	81061922	81061922	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cgtccgctctgtgctgcaagGactcctcaagaagcgcctcc	10	16	2	1	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_020338	exon18	c.G2078T	p.G693V	TGCAAGGACTCCT		28	3	0.11	60	0	0				283	0	0				T	81061922	G	T	81061922	3	4	5	1	0	0	0	0	1	0	0	0	17753	1174	41	3	2132	3	ZMIZ1	10	81061922	Missense_Mutation	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10	9047077	81061922	54472825	28	257											
INPP5A	3632	mdanderson.org	37	chr10	134523943	134523943	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaatccggcacaaggcactGggctacgtgctggacaggta	15	10	0	0	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_005539	exon8	c.G630T	p.L210L	GGCACTGGGCTAC		54	3	0.06	67	0	0				44	0	0				T	134523943	G	T	134523943	2	4	5	1	0	0	0	0	0	0	0	1	7797	1335	47	3		3	INPP5A	10	134523943	Silent	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10	53462021	134523943	1010804	29	258											
VENTX	27287	mdanderson.org	37	chr10	135053695	135053695	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgcgggagcttcctgctGcgggcagcctctggcgtccc	14	15	2	0	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_014468	exon3	c.G662T	p.C221F	CCTGCTGCGGGCA		18	2	0.11	23	0	0				266	0	0				T	135053695	G	T	135053695	3	4	5	1	0	0	0	0	1	0	0	0	17212	1319	46	2	672	2	VENTX	10	135053695	Missense_Mutation	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10	529752	135053695	481052	30	259											
OR51E1	143503	broad.mit.edu	37	chr11	4674157	4674157	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccatctgtcacccactgcGccatgccacagtacttacgt	8	16	2	0	rs192878981	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	OR51E1,caecum,carcinoma,-1,3	OR51E1	NM_152430	exon2	c.G401T	p.R134L	CACTGCGCCATGC		73	5	0.07	82	0	0		67	3	0	0					T	4674157	G	T	4674157	3	4	5	1	0	0	0	0	1	0	0	0	11141	1087	38	1	403	1	OR51E1	11	4674157	Missense_Mutation	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10		4674157	130332359	31	260											
VWCE	220001	mdanderson.org	37	chr11	61039229	61039229	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccgttgtcgtcaagagagCagcctggatgaggacaatgg	14	10	1	2	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_152718	exon14	c.G1703A	p.C568Y	AGAGAGCAGCCTG		65	4	0.06	57	0	0				24	0	0				T	61039229	C	T	61039229	3	4	5	1	0	0	0	0	1	0	0	0	17304	710	25	2	1192	2	VWCE	11	61039229	Missense_Mutation	SNP	C	TCGA-2G-AAF6-01A-11D-A42Y-10	56365072	61039229	73967287	32	261											
PICALM	8301	ucsc.edu	37	chr11	85685760	85685760	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgtaatacctgtgctccTgatacagggccaaaggggtt	13	8	0	1	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	PICALM	NM_007166	exon19	c.A1935G	p.S645S	TGCTCCTGATACA		43	4	0.09	75	0	0		82		144	0	0				C	85685760	T	C	85685760	2	2	5	1	0	0	0	0	0	0	0	1	11927	1567	55	4		4	PICALM	11	85685760	Silent	SNP	T	TCGA-2G-AAF6-01A-11D-A42Y-10	24646531	85685760	49320756	33	262											
PGR	5241	mdanderson.org	37	chr11	100999388	100999388	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccaaacaggcaccaagaGctggtgacctcgcaggcggg	16	12	0	2	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_000926	exon1	c.C414A	p.S138R	CCAAGAGCTGGTG		23	2	0.09	21	0	0				0	0					T	100999388	G	T	100999388	3	4	5	1	0	0	0	0	1	0	0	0	11852	962	34	2	2419	2	PGR	11	100999388	Missense_Mutation	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10	15313628	100999388	34007128	34	263											
ST14	6768	mdanderson.org	37	chr11	130060496	130060496	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgctgagcctcaccttccGcagctttgaccttgcgtcct	9	15	1	2	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_021978	exon7	c.G782T	p.R261L	CCTTCCGCAGCTT		49	3	0.06	51	0	0				16	0	0				T	130060496	G	T	130060496	3	4	5	1	0	0	0	0	1	0	0	0	15266	1087	38	1	808	1	ST14	11	130060496	Missense_Mutation	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10	29061108	130060496	4946020	35	264											
LRP6	4040	broad.mit.edu	37	chr12	12303884	12303884	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acattccgaaggctgtggatGggaaggatgatgtcggggct	17	6	0	1	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	LRP6	NM_002336	exon13	c.C2880A	p.P960P	GTGGATGGGAAGG		203	4	0.02	165	1	0.0060606061		170		58	0	0				T	12303884	G	T	12303884	2	4	5	1	0	0	0	0	0	0	0	1	9006	1335	47	3		3	LRP6	12	12303884	Silent	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10		12303884	121548011	36	265											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529	bycluster	TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	KRAS_ENST00000256078,NS,adenocarcinoma,0,25136	KRAS_ENST00000256078	NM_004985	exon2	c.G35T	p.G12V	ACGCCACCAGCTC		244	43	0.18	175	0	0		0	25136	45	10	0.22				A	25398284	C	A	25398284	3	1	5	1	0	0	0	0	1	0	0	0	8480	507	18	3	671	3	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-2G-AAF6-01A-11D-A42Y-10	13094400	25398284	108453611	37	266											
PLXNC1	10154	mdanderson.org	37	chr12	94542977	94542977	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cagcctggagcacagcctctCgcgcctgtaccgggaccaag	12	16	1	0	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_005761	exon1	c.C230T	p.S77L	GCCTCTCGCGCCT		29	3	0.1	25	0	0				3	0	0				T	94542977	C	T	94542977	3	4	5	1	0	0	0	0	1	0	0	0	12173	893	31	1	232	1	PLXNC1	12	94542977	Missense_Mutation	SNP	C	TCGA-2G-AAF6-01A-11D-A42Y-10	69144693	94542977	39308918	38	267											
METAP2	10988	broad.mit.edu	37	chr12	95867964	95867964	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctcgggcaacatggcgggTgtggaggaggtagcggcctc	18	10	1	0	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	METAP2	NM_006838	exon1	c.T9G	p.G3G	GGCGGGTGTGGAG		110	25	0.23	90	18	0.2		28		235	16	0.07				G	95867964	T	G	95867964	2	3	5	1	0	0	0	0	0	0	0	1	9536	1683	59	4		4	METAP2	12	95867964	Silent	SNP	T	TCGA-2G-AAF6-01A-11D-A42Y-10	1324987	95867964	37983931	39	268											
GPC5	2262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	92345961	92345961	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgtcatgcgaggctgcctGgcgcacatggcggagcttaa	14	10	1	0	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_004466	exon3	c.G846A	p.L282L	CTGCCTGGCGCAC		47	22	0.47	57	0	0				0	0					A	92345961	G	A	92345961	2	1	5	1	0	0	0	0	0	0	0	1	6640	1335	47	3		3	GPC5	13	92345961	Silent	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10		92345961	22823917	40	269											
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	96772134	96772134	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atcaaccatgatttttataaCtggttcttcttccttctcct	3	11	4	1	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_018036	exon31	c.G4525T	p.V1509F	TTATAACTGGTTC		99	29	0.29	81	0	0				13	5	0.38				A	96772134	C	A	96772134	3	1	5	1	0	0	0	0	1	0	0	0	1093	565	20	3	1759	3	ATG2B	14	96772134	Missense_Mutation	SNP	C	TCGA-2G-AAF6-01A-11D-A42Y-10		96772134	10577406	41	270											
GABPB1	2553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	50581739	50581739	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	caattccactggttggaataGagtgcaaatttccaagctga	9	8	0	2	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_005254	exon7	c.C860G	p.S287C	GGAATAGAGTGCA		122	27	0.22	71	0	0				143	37	0.26				C	50581739	G	C	50581739	3	2	5	1	0	0	0	0	1	0	0	0	6192	942	33	5	387	5	GABPB1	15	50581739	Missense_Mutation	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10		50581739	51949653	42	271											
BNIP2	663	mdanderson.org	37	chr15	59981599	59981599	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggcggcgggggcgtggcGgcggcggaggcgtggcgtct	26	9	1	0	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_004330	exon1	c.C41A	p.P14Q	CGTGGCGGCGGCG		54	3	0.06	43	0	0				0	0					T	59981599	G	T	59981599	3	4	5	1	0	0	0	0	1	0	0	0	1476	1116	39	1	1306	1	BNIP2	15	59981599	Missense_Mutation	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10	9399860	59981599	42549793	43	272											
KREMEN2	79412	mdanderson.org	37	chr16	3017029	3017029	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggccctgggcccgccaggCgccgcgctggagctcacctt	15	17	1	0	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_024507	exon6	c.C759T	p.G253G	GCCAGGCGCCGCG		16	2	0.13	15	0	0				3	0	0				T	3017029	C	T	3017029	2	4	5	1	0	0	0	0	0	0	0	1	8485	755	27	1		1	KREMEN2	16	3017029	Silent	SNP	C	TCGA-2G-AAF6-01A-11D-A42Y-10		3017029	87337724	44	273											
MEFV	4210	mdanderson.org	37	chr16	3304633	3304633	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccctcccggcctcgggctgGctgcaccgcaggctggcagc	14	19	0	0	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_000243	exon2	c.C435T	p.S145S	GGGCTGGCTGCAC		36	3	0.08	29	0	0				0	0					A	3304633	G	A	3304633	2	1	5	1	0	0	0	0	0	0	0	1	9508	1194	42	2		2	MEFV	16	3304633	Silent	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10	287604	3304633	87050120	45	274											
TAOK2	9344	mdanderson.org	37	chr16	29996705	29996705	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgggagcttgaggcgcagCgggctggctttggggcagag	21	8	0	2	rs373048486		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_001252043	exon14	c.C1594T	p.R532W	GCGCAGCGGGCTG		40	3	0.08	39	0	0				222	0	0				T	29996705	C	T	29996705	3	4	5	1	0	0	0	0	1	0	0	0	15604	759	27	1	1644	1	TAOK2	16	29996705	Missense_Mutation	SNP	C	TCGA-2G-AAF6-01A-11D-A42Y-10	26692072	29996705	60358048	46	275											
ITGAL	3683	mdanderson.org	37	chr16	30532938	30532938	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gctggggatcccggctgcctGaagcccctccatgagaagga	14	13	0	2	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_002209	exon31	c.G3465T	p.L1155L	CTGCCTGAAGCCC		42	3	0.07	56	0	0				124	0	0				T	30532938	G	T	30532938	2	4	5	1	0	0	0	0	0	0	0	1	7929	1277	45	3		3	ITGAL	16	30532938	Silent	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10	536233	30532938	59821815	47	276											
RNF43	54894	mdanderson.org	37	chr17	56435856	56435856	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcactgggcaagcagcaggGtgctgtgaggtggattggag	20	6	0	1	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_017763	exon9	c.C1281A	p.H427Q	AGCAGGGTGCTGT		72	4	0.06	59	0	0				15	0	0				T	56435856	G	T	56435856	3	4	5	1	0	0	0	0	1	0	0	0	13546	1252	44	3	1078	3	RNF43	17	56435856	Missense_Mutation	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10		56435856	24759354	48	277											
CABLES1	91768	mdanderson.org	37	chr18	20716388	20716388	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tatcagcgtgcaggtgccggCggccgcctttttgggctccg	15	13	1	0	rs371732182		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_001100619	exon1	c.C662T	p.A221V	TGCCGGCGGCCGC		32	3	0.09	56	0	0				13	0	0				T	20716388	C	T	20716388	3	4	5	1	0	0	0	0	1	0	0	0	2547	768	27	1	664	1	CABLES1	18	20716388	Missense_Mutation	SNP	C	TCGA-2G-AAF6-01A-11D-A42Y-10		20716388	57360860	49	278											
INSR	3643	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr19	7143086	7143086	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaacatcgccaagggacctGcgtttccgagatggcctgga	12	13	0	1	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_000208	exon12	c.C2283A	p.R761R	GGACCTGCGTTTC		112	5	0.04	99	0	0				28	0	0				T	7143086	G	T	7143086	2	4	5	1	0	0	0	0	0	0	0	1	7816	1306	46	2		2	INSR	19	7143086	Silent	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10		7143086	51985897	50	279											
ANKLE1	126549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	17396520	17396520	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgccccaaggtgcgtcagAtcttggacatctgggccagt	12	13	3	1	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	FLJ39369,NS,carcinoma,-2,1	FLJ39369	NM_152363	exon8	c.A1567C	p.I523L	CGTCAGATCTTGG		90	26	0.29	72	0	0		-2	1	5	4	0.8				C	17396520	A	C	17396520	3	2	5	1	0	0	0	0	1	0	0	0	628	333	12	4	1597	4	ANKLE1	19	17396520	Missense_Mutation	SNP	A	TCGA-2G-AAF6-01A-11D-A42Y-10	10253434	17396520	41732463	51	280											
GRAMD1A	57655	broad.mit.edu	37	chr19	35510143	35510143	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaagtgccaccagcgccGggtgctgacgtacaccatcc	11	16	0	1	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	GRAMD1A	NM_020895	exon12	c.G1262T	p.R421L	AGCGCCGGGTGCT		109	3	0.03	102	0	0		39		578	0	0				T	35510143	G	T	35510143	3	4	5	1	0	0	0	0	1	0	0	0	6787	1116	39	1	1308	1	GRAMD1A	19	35510143	Missense_Mutation	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10	18113623	35510143	23618840	52	281											
SNRPB	6628	hgsc.bcm.edu;mdanderson.org	37	chr20	2442419	2442419	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtctagggccttggtgggcGcattcccgggggagggggcc	20	10	1	0	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	SNRPB,NS,carcinoma,+1,1	SNRPB	NM_198216	exon7	c.C706T	p.R236C	GTGGGCGCATTCC		92	4	0.04	84	0	0		1	1	3376	3	0				A	2442419	G	A	2442419	3	1	5	1	0	0	0	0	1	0	0	0	14914	1087	38	1	20	1	SNRPB	20	2442419	Missense_Mutation	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10		2442419	60583101	53	282											
C22orf43	51233	broad.mit.edu	37	chr22	23974156	23974156	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcataacagggtgcgtcctTccccctgggccagccacagt	10	15	1	0	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	C22orf43	NM_016449	exon1	c.A55G	p.K19E	CGTCCTTCCCCCT		233	8	0.03	159	3	0.0188679245		18		0	0					C	23974156	T	C	23974156	3	2	5	1	0	0	0	0	1	0	0	0	2164	1792	62	4	682	4	C22orf43	22	23974156	Missense_Mutation	SNP	T	TCGA-2G-AAF6-01A-11D-A42Y-10		23974156	27330410	54	283											
TCF20	6942	broad.mit.edu	37	chr22	42608228	42608228	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggattcatgtgatgagggtcTccccctgggcctctgctccg	13	13	3	2	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	TCF20	NM_181492	exon1	c.A3084G	p.G1028G	AGGGTCTCCCCCT		95	4	0.04	85	0	0		164		109	0	0				C	42608228	T	C	42608228	2	2	5	1	0	0	0	0	0	0	0	1	15749	1538	54	4		4	TCF20	22	42608228	Silent	SNP	T	TCGA-2G-AAF6-01A-11D-A42Y-10	18634072	42608228	8696338	55	284											
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	50728449	50728449	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ctccctgctgtcagtccggtCcaacagccgagtgctcacga	10	16	2	0	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_012401	exon3	c.G565T	p.D189Y	TCCGGTCCAACAG		189	32	0.17	130	0	0				154	28	0.18				A	50728449	C	A	50728449	3	1	5	1	0	0	0	0	1	0	0	0	12171	855	30	3	5091	3	PLXNB2	22	50728449	Missense_Mutation	SNP	C	TCGA-2G-AAF6-01A-11D-A42Y-10	8120221	50728449	576117	56	285											
SRPK3	26576	mdanderson.org	37	chrX	153046776	153046776	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctccgacgacgaggaacaGgaagaccccaaagactactg	12	12	0	2	novel		TCGA-2G-AAF6-01A-11D-A42Y-10	TCGA-2G-AAF6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	64a7112f-6a25-40c7-9e6a-c9bf107e05a4	9a637380-4a84-4cfc-8a4c-4a61515e9229	.	.	NM_001170761	exon2	c.G165T	p.Q55H	GGAACAGGAAGAC		127	5	0.04	136	0	0				0	0					T	153046776	G	T	153046776	3	4	5	1	0	0	0	0	1	0	0	0	15216	991	35	3	171	3	SRPK3	23	153046776	Missense_Mutation	SNP	G	TCGA-2G-AAF6-01A-11D-A42Y-10		153046776	2223784	57	286											
C1orf86	199990	broad.mit.edu	37	chr1	2116938	2116938	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcgggacacaggtgggggCgggagttgaagtacctgtgg	20	7	0	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	C1orf86	NM_001146310	exon8	c.G472A	p.A158T	TGGGGGCGGGAGT		172	5	0.03	235	0	0		20		9	0	0				T	2116938	C	T	2116938	3	4	6	1	0	0	0	0	1	0	0	0	2077	768	27	1	224	1	C1orf86	1	2116938	Missense_Mutation	SNP	C	TCGA-2G-AAF8-01A-11D-A42Y-10		2116938	247133683	1	287											
CLCNKA	1187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	16358965	16358965	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaggacatcttggccaggGgctgccccacggaaccagtg	13	14	1	0	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_004070	exon18	c.G1873T	p.G625C	GCCAGGGGCTGCC		122	20	0.16	202	0	0				1	0	0				T	16358965	G	T	16358965	3	4	6	1	0	0	0	0	1	0	0	0	3492	1232	43	3	1939	3	CLCNKA	1	16358965	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	14242027	16358965	232891656	2	288											
NCSTN	23385	ucsc.edu	37	chr1	160319987	160319987	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttggcttatgaagactttAgtttccccatctttcttctt	6	9	3	2	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	NCSTN	NM_015331	exon5	c.A529G	p.S177G	GACTTTAGTTTCC		149	1	0.01	105	0	0		64		209	54	0.26				G	160319987	A	G	160319987	3	3	6	1	0	0	0	0	1	0	0	0	10287	420	15	4	547	4	NCSTN	1	160319987	Missense_Mutation	SNP	A	TCGA-2G-AAF8-01A-11D-A42Y-10	143961022	160319987	88930634	3	289											
NFASC	23114	hgsc.bcm.edu;broad.mit.edu	37	chr1	204939861	204939861	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccagtggatggtgaatgGggaacctttgcaatgtaagt	14	5	0	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_015090	exon11	c.G1154T	p.G385V	TGAATGGGGAACC		96	4	0.04	116	0	0				0	0					T	204939861	G	T	204939861	3	4	6	1	0	0	0	0	1	0	0	0	10405	1232	43	3	1210	3	NFASC	1	204939861	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	44619874	204939861	44310760	4	290											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr1	228468319	228468319	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtgtgaagtctctgacccCgaggcccatgtggtgtggcg	15	11	1	2	rs186845111	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001271223	exon35	c.C9306T	p.P3102P	TGACCCCGAGGCC		45	4	0.09	61	0	0				2	0	0				T	228468319	C	T	228468319	2	4	6	1	0	0	0	0	0	0	0	1	10859	639	23	1		1	OBSCN	1	228468319	Silent	SNP	C	TCGA-2G-AAF8-01A-11D-A42Y-10	23528458	228468319	20782302	5	291											
TAF1B	9014	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	10059215	10059215	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctactactcatttgtcgaCaaaccagtagcatataaaaa	4	10	2	0	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_005680	exon13	c.C1317T	p.D439D	TGTCGACAAACCA		85	9	0.11	74	0	0				69	15	0.22				T	10059215	C	T	10059215	2	4	6	1	0	0	0	0	0	0	0	1	15576	477	17	3		3	TAF1B	2	10059215	Silent	SNP	C	TCGA-2G-AAF8-01A-11D-A42Y-10		10059215	233140158	6	292											
NPAS2	4862	mdanderson.org	37	chr2	101598761	101598761	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcggacgcggatcctgcaGgccaatatccggtggcaaca	13	13	0	0	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_002518	exon16	c.G1551T	p.Q517H	CCTGCAGGCCAAT		42	3	0.07	42	0	0				4	0	0				T	101598761	G	T	101598761	3	4	6	1	0	0	0	0	1	0	0	0	10609	991	35	3	1609	3	NPAS2	2	101598761	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	91539546	101598761	141600612	7	293											
SMPD4	55627	mdanderson.org	37	chr2	130910946	130910946	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcacccacgatgcagtcGgggagttgcttttttccatt	9	12	1	0	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_017951	exon18	c.C2088A	p.P696P	GCAGTCGGGGAGT		47	3	0.06	88	0	0				191	0	0				T	130910946	G	T	130910946	2	4	6	1	0	0	0	0	0	0	0	1	14860	1103	39	1		1	SMPD4	2	130910946	Silent	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	29312185	130910946	112288427	8	294											
CSRNP3	80034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	166532964	166532964	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaacaaaaaaacgaagagCtctgctgcgtgcctctggag	11	11	2	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001172173	exon6	c.C551A	p.A184D	GAAGAGCTCTGCT		113	21	0.19	114	0	0				1	0	0				A	166532964	C	A	166532964	3	1	6	1	0	0	0	0	1	0	0	0	3990	797	28	2	561	2	CSRNP3	2	166532964	Missense_Mutation	SNP	C	TCGA-2G-AAF8-01A-11D-A42Y-10	35622018	166532964	76666409	9	295											
CASP8	841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	202137405	202137405	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atggagaagagggtcatcctGggagaaggaaagttggacat	16	4	1	3	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001080125	exon4	c.G633A	p.L211L	CATCCTGGGAGAA		79	13	0.16	89	0	0				53	12	0.23				A	202137405	G	A	202137405	2	1	6	1	0	0	0	0	0	0	0	1	2695	1335	47	3		3	CASP8	2	202137405	Silent	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	35604441	202137405	41061968	10	296											
OGG1	4968	mdanderson.org	37	chr3	9792839	9792839	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcaccactggggttccgtGgactcccacttccaagaggt	10	13	1	1	rs370483342	alternate_allele	TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_016821	exon2	c.G348T	p.V116V	TTCCGTGGACTCC		113	5	0.04	160	0	0				42	0	0				T	9792839	G	T	9792839	2	4	6	1	0	0	0	0	0	0	0	1	10892	1335	47	3		3	OGG1	3	9792839	Silent	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10		9792839	188229591	11	297											
RASSF1	11186	mdanderson.org	37	chr3	50368037	50368037	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caagggggcaggcgtgcaggGcctcttggatcttctggcgg	18	10	3	0	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_170714	exon6	c.C1010A	p.A337D	TGCAGGGCCTCTT		32	3	0.09	54	1	0.0185185185				69	0	0				T	50368037	G	T	50368037	3	4	6	1	0	0	0	0	1	0	0	0	13135	1203	42	2	28	2	RASSF1	3	50368037	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	40575198	50368037	147654393	12	298											
FHIT	2272	mdanderson.org	37	chr3	59908140	59908140	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaacatggacgtgaacgtGctgaaaatgtacaagaaaga	11	5	0	5	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_002012	exon8	c.C280A	p.H94N	GAACGTGCTGAAA		53	3	0.06	64	0	0				0	0					T	59908140	G	T	59908140	3	4	6	1	0	0	0	0	1	0	0	0	5909	1333	46	2	171	2	FHIT	3	59908140	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	9540103	59908140	138114290	13	299											
GTF2E1	2960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	120469513	120469513	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ttggccttggacatcttgatCaggaactcctgtgtgaaaga	11	8	2	3	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_005513	exon2	c.C114G	p.I38M	CTTGATCAGGAAC		113	13	0.12	140	0	0				48	13	0.27				G	120469513	C	G	120469513	3	3	6	1	0	0	0	0	1	0	0	0	6896	816	29	5	116	5	GTF2E1	3	120469513	Missense_Mutation	SNP	C	TCGA-2G-AAF8-01A-11D-A42Y-10	60561373	120469513	77552917	14	300											
FBXO40	51725	mdanderson.org	37	chr3	121340831	121340831	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttggtaccacatggtctGtcagcaactaatggggagat	13	7	2	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_016298	exon3	c.G555T	p.L185L	TGGTCTGTCAGCA		75	4	0.05	94	0	0				0	0					T	121340831	G	T	121340831	2	4	6	1	0	0	0	0	0	0	0	1	5781	1364	48	3		3	FBXO40	3	121340831	Silent	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	871318	121340831	76681599	15	301											
ACAD9	28976	mdanderson.org	37	chr3	128623311	128623311	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agggatgctggaccaacctgGctttcccgactgctccatcg	11	14	0	0	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_014049	exon11	c.G1112T	p.G371V	AACCTGGCTTTCC		49	3	0.06	53	0	0				42	0	0				T	128623311	G	T	128623311	3	4	6	1	0	0	0	0	1	0	0	0	111	1203	42	2	1154	2	ACAD9	3	128623311	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	7282480	128623311	69399119	16	302											
HES1	3280	broad.mit.edu;bcgsc.ca	37	chr3	193854208	193854208	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaaaaattcctcgtccccGgtggctgctaccccagccag	10	15	0	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	HES1	NM_005524	exon1	c.G39A	p.P13P	GTCCCCGGTGGCT		207	15	0.07	293	1	0.0034129693		23		7	0	0				A	193854208	G	A	193854208	2	1	6	1	0	0	0	0	0	0	0	1	7105	1103	39	1		1	HES1	3	193854208	Silent	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	65230897	193854208	4168222	17	303											
AFAP1	60312	mdanderson.org	37	chr4	7787938	7787938	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caccgagccgttgatgcacgGgacatcgtcataatgaagtg	12	10	1	2	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001134647	exon12	c.C1513A	p.P505T	TGCACGGGACATC		47	3	0.06	64	0	0				23	0	0				T	7787938	G	T	7787938	3	4	6	1	0	0	0	0	1	0	0	0	352	1232	43	3	959	3	AFAP1	4	7787938	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10		7787938	183366338	18	304											
SHROOM3	57619	mdanderson.org	37	chr4	77676329	77676329	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agctggacagtgaggatcccGaggggccacgccccaggtga	16	12	0	2	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_020859	exon7	c.G4693T	p.E1565X	GATCCCGAGGGGC		52	3	0.06	60	0	0				21	0	0				T	77676329	G	T	77676329	4	4	6	1	0	0	0	0	0	1	0	0	14349	1059	37	1	4719	1	SHROOM3	4	77676329	Nonsense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	69888391	77676329	113477947	19	305											
INPP4B	8821	mdanderson.org	37	chr4	143129612	143129612	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtacctgcattctttgCagatgtagatttattggaac	9	7	1	2	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_003866	exon15	c.G1038A	p.L346L	TCTTTGCAGATGT		46	3	0.07	61	0	0				4	0	0				T	143129612	C	T	143129612	2	4	6	1	0	0	0	0	0	0	0	1	7796	697	25	2		2	INPP4B	4	143129612	Silent	SNP	C	TCGA-2G-AAF8-01A-11D-A42Y-10	65453283	143129612	48024664	20	306											
HCN1	348980	broad.mit.edu	37	chr5	45353277	45353277	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttggtatctgtgttcataGtaatcatgtatcttctgacg	8	8	5	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	HCN1,NS,carcinoma,0,1	HCN1	NM_021072	exon5	c.C1302A	p.Y434X	TTCATAGTAATCA		59	3	0.05	91	0	0		298	1	0	0					T	45353277	G	T	45353277	4	4	6	1	0	0	0	0	0	1	0	0	7036	1024	36	3	1386	3	HCN1	5	45353277	Nonsense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10		45353277	135561983	21	307											
ATP6AP1L	92270	mdanderson.org	37	chr5	81614037	81614037	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgaaagctcgagacacagCcgaagagaaggagctgctga	14	9	0	4	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001017971	exon4	c.C593T	p.A198V	ACACAGCCGAAGA		31	4	0.13	62	0	0				9	0	0				T	81614037	C	T	81614037	3	4	6	1	0	0	0	0	1	0	0	0	1164	739	26	2	607	2	ATP6AP1L	5	81614037	Missense_Mutation	SNP	C	TCGA-2G-AAF8-01A-11D-A42Y-10	36260760	81614037	99301223	22	308											
BRD8	10902	mdanderson.org	37	chr5	137502367	137502367	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaggaagcaagaggtgtGgtgaactgtgtaggaccagc	17	5	0	3	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_006696	exon11	c.C1056A	p.T352T	AGGTGTGGTGAAC		45	3	0.07	79	0	0				66	0	0				T	137502367	G	T	137502367	2	4	6	1	0	0	0	0	0	0	0	1	1508	1335	47	3		3	BRD8	5	137502367	Silent	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	55888330	137502367	43412893	23	309											
PCDHB13	56123	mdanderson.org	37	chr5	140595252	140595252	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttcgccctcaggtctctGgactacgaggccctgcaggg	13	14	2	0	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	PCDHB13,NS,carcinoma,+1,1	PCDHB13	NM_018933	exon1	c.G1557T	p.L519L	GTCTCTGGACTAC		38	3	0.08	48	0	0		1	1	0	0					T	140595252	G	T	140595252	2	4	6	1	0	0	0	0	0	0	0	1	11584	1335	47	3		3	PCDHB13	5	140595252	Silent	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	3092885	140595252	40320008	24	310											
SCGB3A2	117156	mdanderson.org	37	chr5	147261032	147261032	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccttcctcatcaacaaaGtgccccttcctgttgacaag	6	15	2	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_054023	exon2	c.G79T	p.V27L	AACAAAGTGCCCC		45	3	0.07	91	0	0				295	0	0				T	147261032	G	T	147261032	3	4	6	1	0	0	0	0	1	0	0	0	13954	1029	36	3	85	3	SCGB3A2	5	147261032	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	6665780	147261032	33654228	25	311											
HAVCR2	84868	ucsc.edu;bcgsc.ca	37	chr5	156535962	156535962	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agtagtagcagcagcagcagCaggacacagtcaaagggaag	14	8	1	0	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	HAVCR2	NM_032782	exon1	c.G33C	p.L11L	CAGCAGCAGGACA		39	4	0.1	80	0	0		56		8	0	0				G	156535962	C	G	156535962	2	3	6	1	0	0	0	0	0	0	0	1	7014	697	25	5		5	HAVCR2	5	156535962	Silent	SNP	C	TCGA-2G-AAF8-01A-11D-A42Y-10	9274930	156535962	24379298	26	312											
ZBTB9	221504	mdanderson.org	37	chr6	33423539	33423539	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agaggaggaggaggaagatgAtgatgatgaggaccaggggt	20	2	0	6	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_152735	exon2	c.A662G	p.D221G	AAGATGATGATGA		37	3	0.08	70	0	0				37	0	0				G	33423539	A	G	33423539	3	3	6	1	0	0	0	0	1	0	0	0	17616	333	12	4	664	4	ZBTB9	6	33423539	Missense_Mutation	SNP	A	TCGA-2G-AAF8-01A-11D-A42Y-10		33423539	137691528	27	313											
MDN1	23195	mdanderson.org	37	chr6	90385226	90385226	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcgtggtcagggagcgccGctgtcggacgagcatcttca	16	11	3	0	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_014611	exon78	c.C12718A	p.R4240R	AGCGCCGCTGTCG		33	3	0.09	49	0	0				50	0	0				T	90385226	G	T	90385226	2	4	6	1	0	0	0	0	0	0	0	1	9464	1086	38	1		1	MDN1	6	90385226	Silent	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	56961687	90385226	80729841	28	314											
SEC63	11231	mdanderson.org	37	chr6	108224139	108224139	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attgctgaagtccctgaacgGccatctgagaaagcttcatg	10	10	2	3	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_007214	exon12	c.C1118A	p.A373D	TGAACGGCCATCT		80	4	0.05	87	0	0				165	0	0				T	108224139	G	T	108224139	3	4	6	1	0	0	0	0	1	0	0	0	14058	1203	42	2	1204	2	SEC63	6	108224139	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	17838913	108224139	62890928	29	315											
GLI3	2737	broad.mit.edu	37	chr7	42063136	42063136	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tggcagtttgtctcatagatGacttcaggctcctgtttgct	10	9	2	2	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	GLI3	NM_000168	exon10	c.C1428A	p.V476V	ATAGATGACTTCA		161	5	0.03	179	0	0		312		2	0	0				T	42063136	G	T	42063136	2	4	6	1	0	0	0	0	0	0	0	1	6480	1277	45	3		3	GLI3	7	42063136	Silent	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10		42063136	117075527	30	316											
SRRT	51593	mdanderson.org	37	chr7	100481800	100481800	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctcatggagactggctggTttgataaccttctcctggac	10	12	2	2	rs201173432		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001128853	exon6	c.T697G	p.F233V	GGCTGGTTTGATA		80	13	0.16	91	11	0.1208791209				183	22	0.12				G	100481800	T	G	100481800	3	3	6	1	0	0	0	0	1	0	0	0	15227	1725	60	4	715	4	SRRT	7	100481800	Missense_Mutation	SNP	T	TCGA-2G-AAF8-01A-11D-A42Y-10	58418664	100481800	58656863	31	317											
SND1	27044	mdanderson.org	37	chr7	127631040	127631040	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccgaaacctcccaggcttGgtgcaggaaggagagccctt	13	13	0	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_014390	exon16	c.G1710T	p.L570F	AGGCTTGGTGCAG		44	3	0.07	55	0	0				471	1	0				T	127631040	G	T	127631040	3	4	6	1	0	0	0	0	1	0	0	0	14897	1339	47	3	1772	3	SND1	7	127631040	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	27149240	127631040	31507623	32	318											
TMEM213	155006	mdanderson.org	37	chr7	138487805	138487805	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagatgagcccaaggacttGcaagcgtgagacccaggctc	12	13	0	3	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001085429	exon3	c.G315T	p.L105F	GGACTTGCAAGCG		22	2	0.09	21	0	0				0	0					T	138487805	G	T	138487805	3	4	6	1	0	0	0	0	1	0	0	0	16195	1310	46	2	325	2	TMEM213	7	138487805	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	10856765	138487805	20650858	33	319											
ADCK2	90956	mdanderson.org	37	chr7	140373183	140373183	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcctgtcgcacctgaggtGcttcgagctcagacagggac	13	12	1	2	rs151015312	alternate_allele	TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_052853	exon1	c.G53T	p.C18F	TGAGGTGCTTCGA		32	3	0.09	70	0	0				14	0	0				T	140373183	G	T	140373183	3	4	6	1	0	0	0	0	1	0	0	0	288	1319	46	2	55	2	ADCK2	7	140373183	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	1885378	140373183	18765480	34	320											
ADAM2	2515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	39695678	39695678	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atccgcagcccgccgagcccGctgagcagaaacaagacgcg	12	16	0	3	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	ADAM2,NS,carcinoma,0,2	ADAM2	NM_001464	exon1	c.C27T	p.S9S	GAGCCCGCTGAGC		121	26	0.21	181	0	0		0	2	0	0					A	39695678	G	A	39695678	2	1	6	1	0	0	0	0	0	0	0	1	240	1078	38	1		1	ADAM2	8	39695678	Silent	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10		39695678	106668344	35	321											
KCNV1	27012	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	110986360	110986360	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtcgcaaagctccagaggGctgggcacggcggccagggc	17	13	0	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	KCNV1	NM_014379	exon1	c.C258A	p.S86R	CAGAGGGCTGGGC		50	5	0.1	56	0	0		101		1	0	0				T	110986360	G	T	110986360	3	4	6	1	0	0	0	0	1	0	0	0	8137	1194	42	2	1256	2	KCNV1	8	110986360	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	71290682	110986360	35377662	36	322											
IFNA7	3444	ucsc.edu	37	chr9	21202073	21202073	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aggccctcctattacgcaggCtgtgggtctgaggcagatca	13	11	2	2	rs76903863	bycluster;byfrequency	TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	IFNA7	NM_021057	exon1	c.G92C	p.S31T	CGCAGGCTGTGGG		70	8	0.11	114	7	0.0614035088		24		0	0					G	21202073	C	G	21202073	3	3	6	1	0	0	0	0	1	0	0	0	7585	797	28	5	481	5	IFNA7	9	21202073	Missense_Mutation	SNP	C	TCGA-2G-AAF8-01A-11D-A42Y-10		21202073	120011358	37	323											
LRRC19	64922	bcgsc.ca	37	chr9	26996466	26996466	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtagctctgcaggctgttGgggtagctacacatggtgat	14	7	1	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	LRRC19	NM_022901	exon4	c.C627A	p.P209P	GCTGTTGGGGTAG		62	4	0.06	100	0	0		24		0	0					T	26996466	G	T	26996466	2	4	6	1	0	0	0	0	0	0	0	1	9019	1335	47	3		3	LRRC19	9	26996466	Silent	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	5794393	26996466	114216965	38	324											
NINJ1	4814	mdanderson.org	37	chr9	95888707	95888707	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctaccaaggaagatgagcaGcacccccacgccgatctgca	9	16	1	2	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_004148	exon2	c.C289T	p.L97L	TGAGCAGCACCCC		41	3	0.07	60	0	0				58	0	0				A	95888707	G	A	95888707	2	1	6	1	0	0	0	0	0	0	0	1	10464	962	34	2		2	NINJ1	9	95888707	Silent	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	68892241	95888707	45324724	39	325											
CRB2	286204	mdanderson.org	37	chr9	126139289	126139289	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggaggtggctggggcccGgctggagatggacagtgtcc	20	9	0	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_173689	exon13	c.G3806T	p.R1269L	GGGCCCGGCTGGA		48	3	0.06	75	0	0				3	0	0				T	126139289	G	T	126139289	3	4	6	1	0	0	0	0	1	0	0	0	3872	1116	39	1	3856	1	CRB2	9	126139289	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	30250582	126139289	15074142	40	326											
CAMSAP1	157922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	138719406	138719406	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggtacaggaggccggctgCtcttctggtgtaacactgtt	13	10	2	0	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_015447	exon8	c.G1070T	p.S357I	CGGCTGCTCTTCT		34	11	0.32	37	0	0				14	11	0.79				A	138719406	C	A	138719406	3	1	6	1	0	0	0	0	1	0	0	0	2629	797	28	2	3778	2	CAMSAP1	9	138719406	Missense_Mutation	SNP	C	TCGA-2G-AAF8-01A-11D-A42Y-10	12580117	138719406	2494025	41	327											
PITRM1	10531	ucsc.edu	37	chr10	3193470	3193470	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acgtccaactctgtgacaggTatggtgggttcaatatcgga	12	8	2	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	PITRM1	NM_014889	exon15	c.A1707G	p.I569M	GACAGGTATGGTG		71	1	0.01	100	0	0		109		54	8	0.15				C	3193470	T	C	3193470	3	2	6	1	0	0	0	0	1	0	0	0	12000	1628	57	4	1458	4	PITRM1	10	3193470	Missense_Mutation	SNP	T	TCGA-2G-AAF8-01A-11D-A42Y-10		3193470	132341277	42	328											
CACNB2	783	mdanderson.org	37	chr10	18629869	18629869	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctagcatgcttgacagacGccttatagctcctcaaacta	7	12	2	2	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_201590	exon1	c.G14T	p.R5L	ACAGACGCCTTAT		49	3	0.06	59	0	0				0	0					T	18629869	G	T	18629869	3	4	6	1	0	0	0	0	1	0	0	0	2571	1087	38	1	329	1	CACNB2	10	18629869	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	15436399	18629869	116904878	43	329											
EGR2	1959	mdanderson.org	37	chr10	64573455	64573455	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaatgggccgcagtggcaGgtggtgtgggttataggcgg	20	6	0	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001136177	exon3	c.C943A	p.L315M	GTGGCAGGTGGTG		16	2	0.13	27	0	0				3	0	0				T	64573455	G	T	64573455	3	4	6	1	0	0	0	0	1	0	0	0	4998	991	35	3	491	3	EGR2	10	64573455	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	45943586	64573455	70961292	44	330											
TRIM8	81603	mdanderson.org	37	chr10	104416978	104416978	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtactcacacccgctcccgcCcacaccctccgtcccccagt	5	24	1	0	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_030912	exon6	c.C1523A	p.P508H	TCCCGCCCACACC		35	3	0.09	45	0	0				101	0	0				A	104416978	C	A	104416978	3	1	6	1	0	0	0	0	1	0	0	0	16608	623	22	3	1545	3	TRIM8	10	104416978	Missense_Mutation	SNP	C	TCGA-2G-AAF8-01A-11D-A42Y-10	39843523	104416978	31117769	45	331											
PTDSS2	81490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	490432	490432	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctccccagggacatcacattGaggtacaaggagacccggtg	12	12	1	2	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_030783	exon12	c.G1314A	p.L438L	CACATTGAGGTAC		110	21	0.19	207	0	0				49	17	0.35				A	490432	G	A	490432	2	1	6	1	0	0	0	0	0	0	0	1	12785	1281	45	3		3	PTDSS2	11	490432	Silent	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10		490432	134516084	46	332											
FBXO3	26273	mdanderson.org	37	chr11	33780040	33780040	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgaatatcttacccaggaaCcactaacttctgtccattgt	5	11	2	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_012175	exon4	c.G466A	p.V156I	CAGGAACCACTAA		51	3	0.06	91	0	0				8	0	0				T	33780040	C	T	33780040	3	4	6	1	0	0	0	0	1	0	0	0	5771	507	18	3	990	3	FBXO3	11	33780040	Missense_Mutation	SNP	C	TCGA-2G-AAF8-01A-11D-A42Y-10	33289608	33780040	101226476	47	333											
C11orf48	79081	mdanderson.org	37	chr11	62437194	62437194	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcagctcctcatgggGcaaatggagatccccactct	10	14	2	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_024099	exon3	c.C232A	p.P78T	CATGGGGCAAATG		136	6	0.04	127	0	0				7	0	0				T	62437194	G	T	62437194	3	4	6	1	0	0	0	0	1	0	0	0	1649	1203	42	2	579	2	C11orf48	11	62437194	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	28657154	62437194	72569322	48	334											
NRXN2	9379	mdanderson.org	37	chr11	64418974	64418974	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgcactggtccatgtaggGctggccattgaacacgagcc	12	12	0	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	NRXN2,NS,carcinoma,+2,1	NRXN2	NM_015080	exon14	c.C2671A	p.P891T	TGTAGGGCTGGCC		52	3	0.06	73	0	0		2	1	9	0	0				T	64418974	G	T	64418974	3	4	6	1	0	0	0	0	1	0	0	0	10713	1203	42	2	2776	2	NRXN2	11	64418974	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	1981780	64418974	70587542	49	335											
LRTOMT	220074	mdanderson.org	37	chr11	71817127	71817127	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagactgcctgtcagggctgCggatcgaggagcgggccttc	17	11	1	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001145308	exon5	c.C229T	p.R77W	GGGCTGCGGATCG		25	2	0.08	47	0	0				2	0	0				T	71817127	C	T	71817127	3	4	6	1	0	0	0	0	1	0	0	0	9090	759	27	1	840	1	LRTOMT	11	71817127	Missense_Mutation	SNP	C	TCGA-2G-AAF8-01A-11D-A42Y-10	7398153	71817127	63189389	50	336											
DSCAML1	57453	mdanderson.org	37	chr11	117352815	117352815	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accccgtgccgtgcagtttaGctccttcgcatggcccttga	10	15	0	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_020693	exon12	c.C2602A	p.L868I	AGTTTAGCTCCTT		42	3	0.07	113	1	0.0088495575				0	0					T	117352815	G	T	117352815	3	4	6	1	0	0	0	0	1	0	0	0	4795	962	34	2	3827	2	DSCAML1	11	117352815	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	45535688	117352815	17653701	51	337											
OR8D1	283159	mdanderson.org	37	chr11	124179874	124179874	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtccagggagttacttgaAgggggcttgaaatacatgaa	14	5	0	3	rs200912007	by1000genomes	TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001002917	exon1	c.T789C	p.P263P	ACTTGAAGGGGGC		50	3	0.06	105	1	0.0095238095	0			0	0					G	124179874	A	G	124179874	2	3	6	1	0	0	0	0	0	0	0	1	11277	59	3	4		4	OR8D1	11	124179874	Silent	SNP	A	TCGA-2G-AAF8-01A-11D-A42Y-10	6827059	124179874	10826642	52	338											
CACNA1C	775	mdanderson.org	37	chr12	2774012	2774012	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgccaccggggaggcctgGcaggacatcatgctggcctg	16	12	1	0	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_199460	exon37	c.G4398T	p.W1466C	GGCCTGGCAGGAC		25	3	0.12	44	0	0				0	0					T	2774012	G	T	2774012	3	4	6	1	0	0	0	0	1	0	0	0	2558	1212	42	2	4718	2	CACNA1C	12	2774012	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10		2774012	131077883	53	339											
CASC1	55259	broad.mit.edu	37	chr12	25343549	25343549	+	Splice_Site	DEL	T	T	-													tgaaaaaaattctacataccTtttttgctttgggaccctaa					novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	CASC1	NM_001082972	exon2	c.194delA	p.K65fs	CATACCTTTTTTG		3662	7	0	440	0	0		146		0	0					-	25343549	T	-	25343549	8	5	6	1	0	1	0	1	0	0	1	0	2678	1623	56	0	2208	0	CASC1	12	25343549	Splice_Site	DEL	T	TCGA-2G-AAF8-01A-11D-A42Y-10	22569537	25343549	108508346	54	340											
YAF2	10138	mdanderson.org	37	chr12	42631962	42631962	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgggcgctgttacctggtGgggctcttcttgtctcccat	12	14	3	0	rs377532776	alternate_allele	TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_005748	exon1	c.C21A	p.P7P	CCTGGTGGGGCTC		47	3	0.06	93	1	0.0107526882				8	0	0				T	42631962	G	T	42631962	2	4	6	1	0	0	0	0	0	0	0	1	17524	1335	47	3		3	YAF2	12	42631962	Silent	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	17288413	42631962	91219933	55	341											
DCT	1638	mdanderson.org	37	chr13	95121166	95121166	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcgcgagatctaaggcGcccaagaactgctctctttc	8	13	3	2	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	DCT_ENST00000446125,colon,carcinoma,0,5	DCT_ENST00000446125	NM_001129889	exon2	c.C429A	p.G143G	TAAGGCGCCCAAG		51	3	0.06	91	0	0		0	5	0	0					T	95121166	G	T	95121166	2	4	6	1	0	0	0	0	0	0	0	1	4327	1074	38	1		1	DCT	13	95121166	Silent	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10		95121166	20048712	56	342											
RNF31	55072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	24620535	24620535	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ggagagcctggctggatcgtCatggcaaccttgatgaagct	14	9	1	3	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_017999	exon9	c.C1684T	p.H562Y	GATCGTCATGGCA		45	7	0.16	83	0	0				137	44	0.32				T	24620535	C	T	24620535	3	4	6	1	0	0	0	0	1	0	0	0	13538	826	29	3	1718	3	RNF31	14	24620535	Missense_Mutation	SNP	C	TCGA-2G-AAF8-01A-11D-A42Y-10		24620535	82729005	57	343											
TSHR	7253	mdanderson.org	37	chr14	81422036	81422036	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtggaaaatgaggccggcGgacttgctgcagctggtgct	16	10	0	1	rs377366847		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_000369	exon1	c.G12A	p.A4A	GCCGGCGGACTTG		26	2	0.08	42	0	0				1	0	0				A	81422036	G	A	81422036	2	1	6	1	0	0	0	0	0	0	0	1	16682	1103	39	1		1	TSHR	14	81422036	Silent	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	56801501	81422036	25927504	58	344											
C14orf159	80017	broad.mit.edu	37	chr14	91671092	91671092	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttgggatgggtaaagtcaAggaggctgtgaggaggcaca	18	5	1	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	C14orf159	NM_001102368	exon12	c.A1487G	p.K496R	AAGTCAAGGAGGC		66	3	0.05	70	0	0		57		58	0	0				G	91671092	A	G	91671092	3	3	6	1	0	0	0	0	1	0	0	0	1761	72	3	4	1525	4	C14orf159	14	91671092	Missense_Mutation	SNP	A	TCGA-2G-AAF8-01A-11D-A42Y-10	10249056	91671092	15678448	59	345											
CASC5	57082	broad.mit.edu	37	chr15	40915174	40915175	+	Frame_Shift_Del	DEL	TA	TA	-													ttggcaggaacttctgaaacTattttatatacatgtaggca					novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	TA	TA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	CASC5	NM_170589	exon11	c.2790_2791del	p.930_931del	TGAAACTATTTTA		169	10	0.06	169	0	0		269		5	0	0				-	40915175	TA	-	40915174	7	5	6	1	0	1	0	1	0	0	0	0	2681	1509	53	0	2828	0	CASC5	15	40915174	Frame_Shift_Del	DEL	TA	TCGA-2G-AAF8-01A-11D-A42Y-10		40915174	61616218	60	346											
RFX7	64864	hgsc.bcm.edu	37	chr15	56385646	56385646	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaaatttgttgaaataatGggtcattctttaattcttcc	6	6	3	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_022841	exon9	c.C4280A	p.P1427Q	AATAATGGGTCAT		97	4	0.04	117	0	0				11	0	0				T	56385646	G	T	56385646	3	4	6	1	0	0	0	0	1	0	0	0	13319	1348	47	3	106	3	RFX7	15	56385646	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	15470472	56385646	46145746	61	347											
UBL7	84993	mdanderson.org	37	chr15	74744664	74744664	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtaagaggagctgctgtgCagggcagtgtgcaacacccg	15	10	0	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_201265	exon4	c.G360A	p.L120L	GCTGTGCAGGGCA		29	3	0.1	41	0	0				154	0	0				T	74744664	C	T	74744664	2	4	6	1	0	0	0	0	0	0	0	1	16950	697	25	2		2	UBL7	15	74744664	Silent	SNP	C	TCGA-2G-AAF8-01A-11D-A42Y-10	18359018	74744664	27786728	62	348											
ADCY7	113	mdanderson.org	37	chr16	50338324	50338324	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggcccaagggggacgcGgccctgaagatgcgggcgtc	17	14	0	2	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001114	exon10	c.G1422T	p.A474A	GGACGCGGCCCTG		24	2	0.08	41	0	0				20	0	0				T	50338324	G	T	50338324	2	4	6	1	0	0	0	0	0	0	0	1	298	1103	39	1		1	ADCY7	16	50338324	Silent	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10		50338324	40016429	63	349											
AMFR	267	mdanderson.org	37	chr16	56448166	56448166	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcagtgtagacttacctGtctctcactcactcgaagag	7	12	4	2	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001144	exon2	c.C346A	p.Q116K	TTACCTGTCTCTC		40	3	0.08	68	0	0				21	0	0				T	56448166	G	T	56448166	3	4	6	1	0	0	0	0	1	0	0	0	567	1386	48	3	1637	3	AMFR	16	56448166	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	6109842	56448166	33906587	64	350											
CNOT1	23019	mdanderson.org	37	chr16	58577329	58577329	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ataacagaaaaaaaaaaaaaCacacagacatgatgctttgc	5	7	0	3	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_206999	exon31	c.G4616T	p.C1539F	AAAAAACACACAG		132	17	0.13	138	10	0.0724637681				4	0	0				A	58577329	C	A	58577329	3	1	6	1	0	0	0	0	1	0	0	0	3640	478	17	3	2812	3	CNOT1	16	58577329	Missense_Mutation	SNP	C	TCGA-2G-AAF8-01A-11D-A42Y-10	2129163	58577329	31777424	65	351											
KCTD19	146212	mdanderson.org	37	chr16	67333331	67333331	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cttccgtctagcgtgctctcGatgcgaagctggcccagcgc	12	15	2	0	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	KCTD19,NS,carcinoma,0,1	KCTD19	NM_001100915	exon6	c.C921A	p.I307I	GCTCTCGATGCGA		39	3	0.08	95	0	0		0	1	1	0	0				T	67333331	G	T	67333331	2	4	6	1	0	0	0	0	0	0	0	1	8149	1048	37	1		1	KCTD19	16	67333331	Silent	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	8756002	67333331	23021422	66	352											
GLG1	2734	mdanderson.org	37	chr16	74516992	74516992	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttctaccatcttctctgtGtataaatgttccatcaggca	5	11	5	0	rs370503981	alternate_allele	TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001145667	exon10	c.C1602A	p.Y534X	CTCTGTGTATAAA		19	3	0.16	47	0	0				123	0	0				T	74516992	G	T	74516992	4	4	6	1	0	0	0	0	0	1	0	0	6477	1372	48	3	2085	3	GLG1	16	74516992	Nonsense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	7183661	74516992	15837761	67	353											
SREBF1	6720	mdanderson.org	37	chr17	17716712	17716712	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accggggcctgcccgccgccTcagactgcggtcgaggagct	15	16	1	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001005291	exon19	c.A3274G	p.R1092G	GCCGCCTCAGACT		26	3	0.12	32	0	0				123	0	0				C	17716712	T	C	17716712	3	2	6	1	0	0	0	0	1	0	0	0	15196	1550	54	4	267	4	SREBF1	17	17716712	Missense_Mutation	SNP	T	TCGA-2G-AAF8-01A-11D-A42Y-10		17716712	63478498	68	354											
PLCD3	113026	mdanderson.org	37	chr17	43194020	43194020	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggggatggcagctcctcGggatttggggagtccagcgc	17	10	1	0	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	PLCD3_ENST00000322765,NS,carcinoma,0,2	PLCD3_ENST00000322765	.	.	.	.	CTCCTCGGGATTT		47	3	0.06	63	0	0		0	2	30	0	0				T	43194020	G	T	43194020	2	4	6	1	0	0	0	0	0	0	0	1	12079	1103	39	1		1	PLCD3	17	43194020	Silent	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	25477308	43194020	38001190	69	355											
SP6	80320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	45925774	45925774	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtgtgctggctgcccagagAgccgcagacagcggttagca	15	12	0	2	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001258248	exon2	c.T22G	p.S8A	CCAGAGAGCCGCA		45	15	0.33	64	0	0				2	0	0				C	45925774	A	C	45925774	3	2	6	1	0	0	0	0	1	0	0	0	15021	304	11	4	1112	4	SP6	17	45925774	Missense_Mutation	SNP	A	TCGA-2G-AAF8-01A-11D-A42Y-10	2731754	45925774	35269436	70	356											
PDK2	5164	mdanderson.org	37	chr17	48186690	48186690	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccatttcccgcctctacGccaagtacttccagggagac	7	17	1	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_002611	exon10	c.G1009T	p.A337S	CTCTACGCCAAGT		43	3	0.07	53	0	0				28	0	0				T	48186690	G	T	48186690	3	4	6	1	0	0	0	0	1	0	0	0	11722	1087	38	1	1047	1	PDK2	17	48186690	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	2260916	48186690	33008520	71	357											
CACNA1G	8913	mdanderson.org	37	chr17	48638948	48638948	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagaaaaggacccgggcaGcgcggactccgaggcggagg	18	11	0	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_198387	exon1	c.G128T	p.S43I	CGGGCAGCGCGGA		13	2	0.15	14	0	0				1	0	0				T	48638948	G	T	48638948	3	4	6	1	0	0	0	0	1	0	0	0	2562	971	34	2	130	2	CACNA1G	17	48638948	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	452258	48638948	32556262	72	358											
MRC2	9902	mdanderson.org	37	chr17	60758222	60758222	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctttgagcaccactccacGtgggcgcaggcgcagcgcat	12	14	1	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_006039	exon17	c.G2535T	p.T845T	CTCCACGTGGGCG		35	3	0.09	52	0	0				38	0	0				T	60758222	G	T	60758222	2	4	6	1	0	0	0	0	0	0	0	1	9806	1132	40	1		1	MRC2	17	60758222	Silent	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	12119274	60758222	20436988	73	359											
HGS	9146	mdanderson.org	37	chr17	79660778	79660778	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggcggaggagaaggagaGgctggtaagccgggtggggc	23	5	0	3	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_004712	exon10	c.G836T	p.R279M	AGGAGAGGCTGGT		21	2	0.1	35	0	0				84	0	0				T	79660778	G	T	79660778	3	4	6	1	0	0	0	0	1	0	0	0	7127	1000	35	3	874	3	HGS	17	79660778	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	18902556	79660778	1534432	74	360											
CCDC57	284001	mdanderson.org	37	chr17	80129588	80129588	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggacttaccagtcgtctctGtcgaggtgcggacgctgggc	15	12	1	0	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_198082	exon12	c.C1871A	p.T624K	GTCTCTGTCGAGG		41	3	0.07	31	0	0				8	0	0				T	80129588	G	T	80129588	3	4	6	1	0	0	0	0	1	0	0	0	2847	1377	48	3	900	3	CCDC57	17	80129588	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	468810	80129588	1065622	75	361											
MYOM1	8736	mdanderson.org	37	chr18	3173970	3173970	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaagccccagcgtggaaGcgagtctcatcaaactctcc	11	13	3	0	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_003803	exon8	c.C1140A	p.R380R	GTGGAAGCGAGTC		42	3	0.07	64	0	0				2	0	0				T	3173970	G	T	3173970	2	4	6	1	0	0	0	0	0	0	0	1	10138	958	34	2		2	MYOM1	18	3173970	Silent	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10		3173970	74903278	76	362											
ANKRD12	23253	mdanderson.org	37	chr18	9204531	9204531	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagacttatatcttcttacaGgacatactcaggtaattaga	7	7	3	2	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_015208	exon4	c.G293T	p.R98M	CTTACAGGACATA		23	2	0.09	51	0	0				1	0	0				T	9204531	G	T	9204531	3	4	6	1	0	0	0	0	1	0	0	0	636	1000	35	3	303	3	ANKRD12	18	9204531	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	6030561	9204531	68872717	77	363											
TNPO2	30000	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	12816532	12816532	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aggtccttgtcttcgtccttGagctcattccacttctggat	8	12	3	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	TNPO2	NM_013433	exon15	c.C1719G	p.L573L	GTCCTTGAGCTCA		78	7	0.09	97	1	0.0103092784		108		128	16	0.13				C	12816532	G	C	12816532	2	2	6	1	0	0	0	0	0	0	0	1	16395	1277	45	5		5	TNPO2	19	12816532	Silent	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10		12816532	46312451	78	364											
ILVBL	10994	mdanderson.org	37	chr19	15233976	15233976	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagcaggattggggactgaGccatctgagcattcttcacc	12	10	3	2	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_006844	exon4	c.C416T	p.A139V	GACTGAGCCATCT		29	3	0.1	55	0	0				36	0	0				A	15233976	G	A	15233976	3	1	6	1	0	0	0	0	1	0	0	0	7758	971	34	2	1534	2	ILVBL	19	15233976	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	2417444	15233976	43895007	79	365											
ATP4A	495	mdanderson.org	37	chr19	36041523	36041523	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcagtcgtccctctaataGtagagttcctggtcccacca	9	13	1	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_000704	exon22	c.C3102A	p.Y1034X	CTAATAGTAGAGT		32	3	0.09	60	0	0				2	0	0				T	36041523	G	T	36041523	4	4	6	1	0	0	0	0	0	1	0	0	1144	1024	36	3	9	3	ATP4A	19	36041523	Nonsense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	20807547	36041523	23087460	80	366											
PRR19	284338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	42814216	42814216	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagctgagtttgccacaggcCttcccccggaggaacctgat	11	14	0	2	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_199285	exon2	c.C480G	p.A160A	ACAGGCCTTCCCC		38	5	0.13	77	0	0				15	3	0.2				G	42814216	C	G	42814216	2	3	6	1	0	0	0	0	0	0	0	1	12642	668	24	5		5	PRR19	19	42814216	Silent	SNP	C	TCGA-2G-AAF8-01A-11D-A42Y-10	6772693	42814216	16314767	81	367											
PPP1R12C	54776	mdanderson.org	37	chr19	55606890	55606890	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggggctccctccgctgtccGcctttcagggggacccaggg	15	15	1	0	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_017607	exon10	c.C1309T	p.R437W	CTGTCCGCCTTTC		76	4	0.05	104	0	0				180	0	0				A	55606890	G	A	55606890	3	1	6	1	0	0	0	0	1	0	0	0	12404	1086	38	1	1091	1	PPP1R12C	19	55606890	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	12792674	55606890	3522093	82	368											
ZNF628	89887	mdanderson.org	37	chr19	55995439	55995439	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtagaaacacttcctcctgGgctgacggagccgcctgcca	12	14	0	2	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_033113	exon3	c.G2879T	p.G960V	CTCCTGGGCTGAC		37	3	0.08	44	0	0				29	0	0				T	55995439	G	T	55995439	3	4	6	1	0	0	0	0	1	0	0	0	18108	1232	43	3	2869	3	ZNF628	19	55995439	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	388549	55995439	3133544	83	369											
STK4	6789	mdanderson.org	37	chr20	43703740	43703740	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaggagattgaagagatcCggcagaagtaccagtccaag	13	8	0	4	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	STK4,rectum,carcinoma,0,3	STK4	NM_006282	exon11	c.C1387T	p.R463W	GAGATCCGGCAGA		51	3	0.06	71	0	0		0	3	14	0	0				T	43703740	C	T	43703740	3	4	6	1	0	0	0	0	1	0	0	0	15361	643	23	1	1429	1	STK4	20	43703740	Missense_Mutation	SNP	C	TCGA-2G-AAF8-01A-11D-A42Y-10		43703740	19321780	84	370											
ZNF217	7764	bcgsc.ca	37	chr20	52192819	52192819	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggtggcggccccttggacCcccacattctgctgtggtct	12	15	2	0	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	ZNF217	NM_006526	exon3	c.G2484A	p.G828G	TTGGACCCCCACA		53	4	0.08	64	0	0		227		164	0	0				T	52192819	C	T	52192819	2	4	6	1	0	0	0	0	0	0	0	1	17829	610	22	3		3	ZNF217	20	52192819	Silent	SNP	C	TCGA-2G-AAF8-01A-11D-A42Y-10	8489079	52192819	10832701	85	371											
PMEPA1	56937	mdanderson.org	37	chr20	56227187	56227187	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggcgcgatgtgtgtgtgGtggagccgggtcccctccag	19	10	0	0	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_020182	exon4	c.C786A	p.H262Q	TGTGTGGTGGAGC		22	3	0.14	42	0	0				32	0	0				T	56227187	G	T	56227187	3	4	6	1	0	0	0	0	1	0	0	0	12179	1252	44	3	81	3	PMEPA1	20	56227187	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	4034368	56227187	6798333	86	372											
LAMA5	3911	mdanderson.org	37	chr20	60889717	60889717	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtgtaggcagcaaggtcgGcaagatcccgtggggtgcgc	17	10	0	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_005560	exon61	c.C8261T	p.A2754V	AGGTCGGCAAGAT		20	2	0.1	41	0	0				115	0	0				A	60889717	G	A	60889717	3	1	6	1	0	0	0	0	1	0	0	0	8647	1203	42	2	2906	2	LAMA5	20	60889717	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	4662530	60889717	2135803	87	373											
COL9A3	1299	mdanderson.org	37	chr20	61468455	61468455	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaaattgcacagttagccGcgcacctaaggaagcctttg	9	11	0	0	rs190167637	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001853	exon30	c.G1624T	p.A542S	TTAGCCGCGCACC		24	3	0.13	26	0	0				32	0	0				T	61468455	G	T	61468455	3	4	6	1	0	0	0	0	1	0	0	0	3732	1087	38	1	1742	1	COL9A3	20	61468455	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	578738	61468455	1557065	88	374											
RUNX1	861	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr21	36164782	36164782	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catggccgacatgccgatgcCgatgcccgaggtgaccggcg	15	14	0	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	RUNX1	NM_001754	exon9	c.G1093A	p.G365S	CGATGCCGATGCC		24	3	0.13	60	0	0		687		26	8	0.31				T	36164782	C	T	36164782	3	4	6	1	0	0	0	0	1	0	0	0	13797	652	23	1	353	1	RUNX1	21	36164782	Missense_Mutation	SNP	C	TCGA-2G-AAF8-01A-11D-A42Y-10		36164782	11965113	89	375											
KRTAP10-3	386682	mdanderson.org	37	chr21	45978322	45978322	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaggcctgctggcagggggAggatgtgcagcaagctggct	19	9	0	0	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_198696	exon1	c.T277C	p.S93P	AGGGGGAGGATGT		20	4	0.2	21	3	0.1428571429				0	0					G	45978322	A	G	45978322	3	3	6	1	0	0	0	0	1	0	0	0	8552	304	11	4	392	4	KRTAP10-3	21	45978322	Missense_Mutation	SNP	A	TCGA-2G-AAF8-01A-11D-A42Y-10	9813540	45978322	2151573	90	376											
ARVCF	421	mdanderson.org	37	chr22	19965526	19965526	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acagccgactgcagggcatgCaggagcgcgtccaccagccc	13	16	0	0	rs373349214	alternate_allele	TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001670	exon8	c.G1653A	p.L551L	GGCATGCAGGAGC		43	3	0.07	66	0	0				22	0	0				T	19965526	C	T	19965526	2	4	6	1	0	0	0	0	0	0	0	1	1002	697	25	2		2	ARVCF	22	19965526	Silent	SNP	C	TCGA-2G-AAF8-01A-11D-A42Y-10		19965526	31339040	91	377											
RBM10	8241	hgsc.bcm.edu	37	chrX	47030570	47030672	+	Frame_Shift_Del	DEL	GGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACGTGCCCCCCAT	GGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACGTGCCCCCCAT	-													accgagcaaggggaggaggaGgaggaggaggaggatgagga					novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	GGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACGTGCCCCCCAT	GGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACGTGCCCCCCAT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	RBM10	NM_001204468	exon4	c.539_627del	p.180_209del	GGAGGAGGAGGAG		30	0	0	48	0	0		117		7	0	0				-	47030672	GGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACGTGCCCCCCAT	-	47030570	7	5	6	1	0	1	0	1	0	0	0	0	13162	991	35	0	355	0	RBM10	23	47030570	Frame_Shift_Del	DEL	GGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACGTGCCCCCCAT	TCGA-2G-AAF8-01A-11D-A42Y-10		47030570	108239990	92	378											
GNL3L	54552	hgsc.bcm.edu	37	chrX	54578731	54578731	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atctcccaatgcagcgggaaGatcagcttctatataccacc	7	13	3	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_001184819	exon13	c.G1188T	p.K396N	CGGGAAGATCAGC		103	6	0.06	119	0	0				29	0	0				T	54578731	G	T	54578731	3	4	6	1	0	0	0	0	1	0	0	0	6579	933	33	3	1234	3	GNL3L	23	54578731	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	7548161	54578731	100691829	93	379											
DLG3	1741	bcgsc.ca	37	chrX	69665375	69665375	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccccagctggtggccagaGtgcacctgtaccaaccggga	14	14	0	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	DLG3	NM_021120	exon1	c.G324T	p.E108D	GCCAGAGTGCACC		35	4	0.11	39	0	0		100		0	0					T	69665375	G	T	69665375	3	4	6	1	0	0	0	0	1	0	0	0	4584	1020	36	3	326	3	DLG3	23	69665375	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10	15086644	69665375	85605185	94	380											
CENPI	2491	mdanderson.org	37	chrX	100383722	100383722	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctgccttctcagatgggCtcagtgctaaacaactctct	8	13	3	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_006733	exon11	c.C1092A	p.G364G	GATGGGCTCAGTG		41	3	0.07	33	0	0				10	0	0				A	100383722	C	A	100383722	2	1	6	1	0	0	0	0	0	0	0	1	3255	784	28	2		2	CENPI	23	100383722	Silent	SNP	C	TCGA-2G-AAF8-01A-11D-A42Y-10	30718347	100383722	54886838	95	381											
RGAG1	57529	mdanderson.org	37	chrX	109694903	109694903	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccccagcactaatgacggCcctaccctctggagtgatgc	10	15	1	2	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	.	NM_020769	exon3	c.C1058T	p.A353V	TGACGGCCCTACC		51	3	0.06	53	0	0				2	0	0				T	109694903	C	T	109694903	3	4	6	1	0	0	0	0	1	0	0	0	13325	739	26	2	1060	2	RGAG1	23	109694903	Missense_Mutation	SNP	C	TCGA-2G-AAF8-01A-11D-A42Y-10	9311181	109694903	45575657	96	382											
KDM5D	8284	bcgsc.ca	37	chrY	21878489	21878489	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catgctcactcacccagtcaGcagtacaaaagttgacagct	7	13	3	1	novel		TCGA-2G-AAF8-01A-11D-A42Y-10	TCGA-2G-AAF8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1d9d2ea5-041f-47bb-b1b5-fc33203bbcda	c7318199-b4b8-42bc-865c-20507b465c0c	.	KDM5D	NM_001146705	exon15	c.C1922A	p.A641D	CAGTCAGCAGTAC		52	4	0.08	103	0	0		40		10	0	0				T	21878489	G	T	21878489	3	4	6	1	0	0	0	0	1	0	0	0	8178	971	34	2	2846	2	KDM5D	24	21878489	Missense_Mutation	SNP	G	TCGA-2G-AAF8-01A-11D-A42Y-10		21878489	37495077	97	383											
LPHN2	23266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr1	82436031	82436031	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tatttgcaggacttctacacTttttctttttggcagctttt	6	8	2	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_012302	exon14	c.T2716A	p.F906I	CTACACTTTTTCT		85	12	0.14	110	0	0				7	0	0				A	82436031	T	A	82436031	3	1	7	1	0	0	0	0	1	0	0	0	8960	1609	56	5	2766	5	LPHN2	1	82436031	Missense_Mutation	SNP	T	TCGA-2G-AAFG-01A-11D-A42Y-10		82436031	166814590	1	384											
WDR63	126820	mdanderson.org	37	chr1	85573833	85573833	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatctacttttttgcatctGgatctctcctggaaacctct	5	13	4	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_145172	exon15	c.G1671T	p.L557L	GCATCTGGATCTC		49	3	0.06	40	0	0				0	0					T	85573833	G	T	85573833	2	4	7	1	0	0	0	0	0	0	0	1	17373	1335	47	3		3	WDR63	1	85573833	Silent	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	3137802	85573833	163676788	2	385											
SPRR1B	6699	broad.mit.edu;mdanderson.org	37	chr1	153005016	153005016	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaaggttccagagccatgCcaccccaaggtgcctgagcc	10	17	0	2	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	SPRR1B,NS,carcinoma,0,1	SPRR1B	NM_003125	exon2	c.C195T	p.C65C	GCCATGCCACCCC		80	4	0.05	89	0	0		18	1	0	0					T	153005016	C	T	153005016	2	4	7	1	0	0	0	0	0	0	0	1	15151	747	26	2		2	SPRR1B	1	153005016	Silent	SNP	C	TCGA-2G-AAFG-01A-11D-A42Y-10	67431183	153005016	96245605	3	386											
OR10J1	26476	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr1	159410279	159410279	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gattgcttcagttgagggccGgaagaaggcttttgccacct	13	9	1	2	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	OR10J1,NS,carcinoma,+1,1	OR10J1	NM_012351	exon1	c.G731A	p.R244Q	AGGGCCGGAAGAA		105	6	0.06	108	1	0.0092592593		1	1	0	0					A	159410279	G	A	159410279	3	1	7	1	0	0	0	0	1	0	0	0	10957	1116	39	1	733	1	OR10J1	1	159410279	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	6405263	159410279	89840342	4	387											
HLX	3142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	221054636	221054636	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcatctctagatcccattaaCgaggcttctgcaatcctgag	8	12	2	2	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_021958	exon2	c.C693G	p.N231K	CATTAACGAGGCT		118	18	0.15	147	0	0				15	0	0				G	221054636	C	G	221054636	3	3	7	1	0	0	0	0	1	0	0	0	7256	535	19	5	699	5	HLX	1	221054636	Missense_Mutation	SNP	C	TCGA-2G-AAFG-01A-11D-A42Y-10	61644357	221054636	28195985	5	388											
ARID4B	51742	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	235345007	235345007	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	actggaggtcttggagctccCcagcaacactatccacctca	8	15	2	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	ARID4B	NM_016374	exon20	c.G3227C	p.G1076A	AGCTCCCCAGCAA		59	10	0.17	86	1	0.011627907		142		63	17	0.27				G	235345007	C	G	235345007	3	3	7	1	0	0	0	0	1	0	0	0	917	623	22	5	731	5	ARID4B	1	235345007	Missense_Mutation	SNP	C	TCGA-2G-AAFG-01A-11D-A42Y-10	14290371	235345007	13905614	6	389											
FSIP2	401024	broad.mit.edu	37	chr2	186680198	186680198	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agatctcatttcatctactgGgtatatgaaattaaagcagt	7	6	3	2	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	FSIP2	NM_173651	exon19	c.G20693T	p.G6898V	CTACTGGGTATAT		310	5	0.02	307	0	0		251		0	0					T	186680198	G	T	186680198	5	4	7	1	0	0	0	0	0	0	1	0	6109	1246	43	3	20767	3	FSIP2	2	186680198	Splice_Site	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10		186680198	56519175	7	390											
NBEAL1	65065	broad.mit.edu	37	chr2	204000666	204000666	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcggatcagtggagtttGgaggatagacactctttaga	12	6	3	2	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	NBEAL1	NM_001114132	exon27	c.G3993T	p.L1331F	GAGTTTGGAGGAT		303	6	0.02	304	0	0		266		0	0					T	204000666	G	T	204000666	3	4	7	1	0	0	0	0	1	0	0	0	10235	1339	47	3	4095	3	NBEAL1	2	204000666	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	17320468	204000666	39198707	8	391											
FBLN2	2199	mdanderson.org	37	chr3	13655520	13655520	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggcctgggcctccgcgtgCgggccgagggccagtcgtgt	19	13	0	0	rs148310871	bycluster;by1000genomes	TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	FBLN2_ENST00000492059,colon,carcinoma,-1,1	FBLN2_ENST00000492059	NM_001998	exon5	c.C1585T	p.R529W	CGCGTGCGGGCCG		42	3	0.07	32	0	0	0	-1	1	32	0	0				T	13655520	C	T	13655520	3	4	7	1	0	0	0	0	1	0	0	0	5731	759	27	1	289	1	FBLN2	3	13655520	Missense_Mutation	SNP	C	TCGA-2G-AAFG-01A-11D-A42Y-10		13655520	184366910	9	392											
ACVR2B	93	bcgsc.ca	37	chr3	38518867	38518867	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaccagagcggcctggagCgctgcgaaggcgagcaggac	16	13	0	1	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	ACVR2B	NM_001106	exon2	c.C142T	p.R48C	CTGGAGCGCTGCG		61	0	0	80	0	0		88		13	0	0				T	38518867	C	T	38518867	3	4	7	1	0	0	0	0	1	0	0	0	223	768	27	1	148	1	ACVR2B	3	38518867	Missense_Mutation	SNP	C	TCGA-2G-AAFG-01A-11D-A42Y-10	24863347	38518867	159503563	10	393											
TKT	7086	mdanderson.org	37	chr3	53275169	53275169	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaccgggtgcccgtccaaGtcggagctgatcttcctcag	14	13	2	1	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001135055	exon3	c.C318A	p.D106E	GTCCAAGTCGGAG		36	3	0.08	16	0	0				1038	0	0				T	53275169	G	T	53275169	3	4	7	1	0	0	0	0	1	0	0	0	15993	1020	36	3	1601	3	TKT	3	53275169	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	14756302	53275169	144747261	11	394											
MAGI1	9223	hgsc.bcm.edu	37	chr3	65425594	65425594	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgttgCtgctgctgttgctgctgctg	14	11	0	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	MAGI1_ENST00000402939,NS,carcinoma,0,9	MAGI1_ENST00000402939	NM_001033057	exon9	c.G1230A	p.Q410Q	CTGTTGCTGCTGC		40	10	0.25	28	1	0.0357142857		0	9	7	0	0				T	65425594	C	T	65425594	2	4	7	1	0	0	0	0	0	0	0	1	9239	796	28	2		2	MAGI1	3	65425594	Silent	SNP	C	TCGA-2G-AAFG-01A-11D-A42Y-10	12150425	65425594	132596836	12	395											
MED12L	116931	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr3	151093929	151093929	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaattactgcagcttatctGttatcctcatggcattaaag	7	8	2	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	MED12L	NM_053002	exon26	c.G3875A	p.C1292Y	TTATCTGTTATCC		78	12	0.15	66	1	0.0151515152		271		7	0	0				A	151093929	G	A	151093929	3	1	7	1	0	0	0	0	1	0	0	0	9478	1377	48	3	3977	3	MED12L	3	151093929	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	85668335	151093929	46928501	13	396											
DSPP	1834	bcgsc.ca	37	chr4	88536118	88536118	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcaacagcagtgacagcagTgatagcagtgacagcagtga	13	8	0	4	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	DSPP	NM_014208	exon5	c.T2304C	p.S768S	CAGCAGTGATAGC		85	1	0.01	88	0	0		174		0	0					C	88536118	T	C	88536118	2	2	7	1	0	0	0	0	0	0	0	1	4808	1693	59	4		4	DSPP	4	88536118	Silent	SNP	T	TCGA-2G-AAFG-01A-11D-A42Y-10		88536118	102618158	14	397											
SEC24B	10427	mdanderson.org	37	chr4	110460718	110460718	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gcccttttctttcttccagaGatgagagtcctgccaaagca	8	12	2	2	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_006323	exon24	c.G3694T	p.D1232Y	TCCAGAGATGAGA		40	3	0.08	67	0	0				47	0	0				T	110460718	G	T	110460718	3	4	7	1	0	0	0	0	1	0	0	0	14048	956	33	3	3788	3	SEC24B	4	110460718	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	21924600	110460718	80693558	15	398											
PLEKHG4B	153478	mdanderson.org	37	chr5	143516	143516	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gacccgagaccgtcatggcaGagcagtggtgcaggtccgca	15	12	1	2	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_052909	exon3	c.G641T	p.R214I	ATGGCAGAGCAGT		33	3	0.09	45	0	0				26	0	0				T	143516	G	T	143516	3	4	7	1	0	0	0	0	1	0	0	0	12119	942	33	3	651	3	PLEKHG4B	5	143516	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10		143516	180771744	16	399											
BRD9	65980	mdanderson.org	37	chr5	884147	884147	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcctctgcggtactgtccGtcaagctgcaggcattccct	10	15	2	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	BRD9_ENST00000467963,NS,carcinoma,+1,4	BRD9_ENST00000467963	NM_023924	exon8	c.C872A	p.T291K	CTGTCCGTCAAGC		52	3	0.06	48	0	0		1	4	72	0	0				T	884147	G	T	884147	3	4	7	1	0	0	0	0	1	0	0	0	1509	1145	40	1	957	1	BRD9	5	884147	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	740631	884147	180031113	17	400											
FBN2	2201	mdanderson.org	37	chr5	127623058	127623058	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgggcacgtgcattcataGgacccaaaagtgttcatgca	10	10	2	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001999	exon54	c.C6822A	p.S2274S	TTCATAGGACCCA		52	3	0.06	66	0	0				0	0					T	127623058	G	T	127623058	2	4	7	1	0	0	0	0	0	0	0	1	5735	987	35	3		3	FBN2	5	127623058	Silent	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	126738911	127623058	53292202	18	401											
DEK	7913	bcgsc.ca	37	chr6	18264096	18264096	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttcctcctcctcctcctcCtcgtcgtcctcgtcctcttc	3	21	1	0	rs147127829	bycluster;byfrequency;by1000genomes	TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	DEK	NM_003472	exon2	c.G123C	p.E41D	CTCCTCCTCGTCG		103	4	0.04	113	0	0		31		144	0	0				G	18264096	C	G	18264096	3	3	7	1	0	0	0	0	1	0	0	0	4452	680	24	5	1044	5	DEK	6	18264096	Missense_Mutation	SNP	C	TCGA-2G-AAFG-01A-11D-A42Y-10		18264096	152850971	19	402											
HIST1H2AI	8329	broad.mit.edu	37	chr6	27776148	27776148	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgccggtgtacctggcggCggtgctggagtacctgaccg	17	12	0	1	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	HIST1H2AI	NM_003509	exon1	c.C161T	p.A54V	TGGCGGCGGTGCT		137	14	0.1	131	0	0		9		41	7	0.17				T	27776148	C	T	27776148	3	4	7	1	0	0	0	0	1	0	0	0	7175	768	27	1	163	1	HIST1H2AI	6	27776148	Missense_Mutation	SNP	C	TCGA-2G-AAFG-01A-11D-A42Y-10	9512052	27776148	143338919	20	403											
COL11A2	1302	mdanderson.org	37	chr6	33140407	33140407	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatagggccggtttctcctGctgctccctagacaaaagca	9	14	1	1	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_080680	exon39	c.C2798T	p.A933V	TCTCCTGCTGCTC		40	3	0.08	33	0	0				0	0					A	33140407	G	A	33140407	3	1	7	1	0	0	0	0	1	0	0	0	3691	1319	46	2	2524	2	COL11A2	6	33140407	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	5364259	33140407	137974660	21	404											
B3GALT4	8705	bcgsc.ca	37	chr6	33245604	33245604	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggagtcagcagcccagggGgatatcttgcaggccgcctt	14	12	2	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	B3GALT4	NM_003782	exon1	c.G408T	p.G136G	CCAGGGGGATATC		40	0	0	44	0	0		30		16	0	0				T	33245604	G	T	33245604	2	4	7	1	0	0	0	0	0	0	0	1	1247	1219	43	3		3	B3GALT4	6	33245604	Silent	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	105197	33245604	137869463	22	405											
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	33652420	33652420	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcaaaactacctccagaacCggaagtccacctcgcggggg	11	14	0	1	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_002224	exon38	c.C5092G	p.R1698G	CAGAACCGGAAGT		98	20	0.2	121	0	0				137	31	0.23				G	33652420	C	G	33652420	3	3	7	1	0	0	0	0	1	0	0	0	7965	643	23	5	5242	5	ITPR3	6	33652420	Missense_Mutation	SNP	C	TCGA-2G-AAFG-01A-11D-A42Y-10	406816	33652420	137462647	23	406											
ZNF76	7629	mdanderson.org	37	chr6	35259494	35259494	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcgccaccaactataagaAtcacgtgcgcatccacacag	7	15	1	1	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_003427	exon9	c.A911G	p.N304S	ATAAGAATCACGT		18	3	0.17	26	0	0				60	0	0				G	35259494	A	G	35259494	3	3	7	1	0	0	0	0	1	0	0	0	18184	101	4	4	941	4	ZNF76	6	35259494	Missense_Mutation	SNP	A	TCGA-2G-AAFG-01A-11D-A42Y-10	1607074	35259494	135855573	24	407											
ANKIB1	54467	mdanderson.org	37	chr7	91991528	91991528	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgaagcacatgagccttGtgactgccaaacatggaaga	12	8	0	4	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_019004	exon10	c.G1427T	p.C476F	AGCCTTGTGACTG		52	3	0.06	37	0	0				73	0	0				T	91991528	G	T	91991528	3	4	7	1	0	0	0	0	1	0	0	0	626	1377	48	3	1461	3	ANKIB1	7	91991528	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10		91991528	67147135	25	408											
FLNC	2318	broad.mit.edu;ucsc.edu	37	chr7	128490068	128490068	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacgaggaggagccctctgaAgtgccacagctgcgccagcc	13	15	1	1	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	FLNC	NM_001458	exon31	c.A5238G	p.E1746E	CTCTGAAGTGCCA		16	4	0.25	13	0	0		339		9	0	0				G	128490068	A	G	128490068	2	3	7	1	0	0	0	0	0	0	0	1	5967	69	3	4		4	FLNC	7	128490068	Silent	SNP	A	TCGA-2G-AAFG-01A-11D-A42Y-10	36498540	128490068	30648595	26	409											
DUSP4	1846	mdanderson.org	37	chr8	29207576	29207576	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagcccttagcccgccgccGcacgatggtgttacagcgca	13	15	0	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001394	exon1	c.C220T	p.R74W	GCCGCCGCACGAT		43	3	0.07	33	0	0				10	0	0				A	29207576	G	A	29207576	3	1	7	1	0	0	0	0	1	0	0	0	4853	1086	38	1	1144	1	DUSP4	8	29207576	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10		29207576	117156446	27	410											
UBR5	51366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	103277378	103277378	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttctgtgttcttgccaggCcttggagtataaaatcctct	9	10	3	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_015902	exon53	c.G7551T	p.R2517S	GCCAGGCCTTGGA		155	16	0.1	115	0	0				124	20	0.16				A	103277378	C	A	103277378	3	1	7	1	0	0	0	0	1	0	0	0	16965	738	26	2	876	2	UBR5	8	103277378	Missense_Mutation	SNP	C	TCGA-2G-AAFG-01A-11D-A42Y-10	74069802	103277378	43086644	28	411											
ADCY8	114	mdanderson.org	37	chr8	131880105	131880105	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catttaccttgaagaaggaaGcaaactttgtattgccgtga	9	7	0	3	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001115	exon9	c.C2197A	p.L733I	AAGGAAGCAAACT		41	3	0.07	43	0	0				0	0					T	131880105	G	T	131880105	3	4	7	1	0	0	0	0	1	0	0	0	299	971	34	2	1598	2	ADCY8	8	131880105	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	28602727	131880105	14483917	29	412											
RHPN1	114822	mdanderson.org	37	chr8	144462334	144462334	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgcaggagctggaggagcGcaggcagcttggtaaggcgc	19	10	0	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_052924	exon10	c.G1205A	p.R402H	AGGAGCGCAGGCA		28	3	0.11	21	0	0				9	0	0				A	144462334	G	A	144462334	3	1	7	1	0	0	0	0	1	0	0	0	13399	1087	38	1	1243	1	RHPN1	8	144462334	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	12582229	144462334	1901688	30	413											
ZNF782	158431	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr9	99581871	99581871	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatcaggctgagcccctggCaagcagaccccgcaatgtca	10	16	2	2	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001001662	exon6	c.G434T	p.C145F	CCCTGGCAAGCAG		56	5	0.09	64	0	0				7	2	0.29				A	99581871	C	A	99581871	3	1	7	1	0	0	0	0	1	0	0	0	18203	710	25	2	1669	2	ZNF782	9	99581871	Missense_Mutation	SNP	C	TCGA-2G-AAFG-01A-11D-A42Y-10		99581871	41631560	31	414											
TTF1	7270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	135275424	135275424	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggccccacaagctcacctTgtgctttaaattccttaaac	5	13	1	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_007344	exon3	c.A1589G	p.Q530R	TCACCTTGTGCTT		148	31	0.21	149	0	0				42	13	0.31				C	135275424	T	C	135275424	3	2	7	1	0	0	0	0	1	0	0	0	16779	1812	63	4	1164	4	TTF1	9	135275424	Missense_Mutation	SNP	T	TCGA-2G-AAFG-01A-11D-A42Y-10	35693553	135275424	5938007	32	415											
DDX31	64794	broad.mit.edu	37	chr9	135537931	135537931	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctaaccgaatgcttctttGgagaaaacattttttgtgcg	9	7	1	1	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	DDX31	NM_022779	exon2	c.C542A	p.P181Q	TTCTTTGGAGAAA		144	5	0.03	148	1	0.0067567568		76		66	0	0				T	135537931	G	T	135537931	3	4	7	1	0	0	0	0	1	0	0	0	4379	1348	47	3	2096	3	DDX31	9	135537931	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	262507	135537931	5675500	33	416											
NOTCH1	4851	mdanderson.org	37	chr9	139399468	139399468	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacatgctccgcacagtccaGcccgtcccactcgcactccg	7	20	0	0	rs370713185	alternate_allele	TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	NOTCH1_ENST00000277541,NS,lymphoid_neoplasm,0,2	NOTCH1_ENST00000277541	NM_017617	exon26	c.C4675A	p.L1559M	AGTCCAGCCCGTC		44	4	0.09	44	0	0		0	2	29	0	0				T	139399468	G	T	139399468	3	4	7	1	0	0	0	0	1	0	0	0	10593	962	34	2	3028	2	NOTCH1	9	139399468	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	3861537	139399468	1813963	34	417											
TPRN	286262	mdanderson.org	37	chr9	140094386	140094386	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccggggctggggggcgggtGgagggagggatcccccgact	22	11	0	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001128228	exon1	c.C778A	p.H260N	GCGGGTGGAGGGA		26	2	0.08	12	0	0				15	0	0				T	140094386	G	T	140094386	3	4	7	1	0	0	0	0	1	0	0	0	16481	1348	47	3	1453	3	TPRN	9	140094386	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	694918	140094386	1119045	35	418											
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	70412305	70412305	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gatagaaatagtagtgtacaCcggtaaagaagggaaaagct	12	4	0	2	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_030625	exon6	c.C4415G	p.T1472S	TGTACACCGGTAA		66	12	0.18	72	0	0				69	23	0.33				G	70412305	C	G	70412305	3	3	7	1	0	0	0	0	1	0	0	0	15827	507	18	5	4433	5	TET1	10	70412305	Missense_Mutation	SNP	C	TCGA-2G-AAFG-01A-11D-A42Y-10		70412305	65122442	36	419											
LGI1	9211	broad.mit.edu	37	chr10	95553006	95553006	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agacactttttcttatttgaAtgatgagtatgtagtcatcg	8	5	2	4	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	LGI1	NM_005097	exon7	c.A737G	p.N246S	ATTTGAATGATGA		90	4	0.04	73	0	0		69		0	0					G	95553006	A	G	95553006	3	3	7	1	0	0	0	0	1	0	0	0	8790	101	4	4	763	4	LGI1	10	95553006	Missense_Mutation	SNP	A	TCGA-2G-AAFG-01A-11D-A42Y-10	25140701	95553006	39981741	37	420											
MKI67	4288	broad.mit.edu;mdanderson.org	37	chr10	129905196	129905196	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcacgcccactttccccagGgatgtcttgagccgtcgctt	9	15	2	1	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	MKI67	NM_002417	exon13	c.C4908A	p.S1636S	CCCCAGGGATGTC		156	6	0.04	139	0	0		363		81	0	0				T	129905196	G	T	129905196	2	4	7	1	0	0	0	0	0	0	0	1	9645	1219	43	3		3	MKI67	10	129905196	Silent	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	34352190	129905196	5629551	38	421											
RASSF7	8045	mdanderson.org	37	chr11	561874	561874	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgccaggaagtggtcatcGcactagcccaagcaataggt	11	12	1	0	rs371827786		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001143994	exon2	c.G106A	p.A36T	GTCATCGCACTAG		39	3	0.08	41	0	0				30	0	0				A	561874	G	A	561874	3	1	7	1	0	0	0	0	1	0	0	0	13142	1087	38	1	108	1	RASSF7	11	561874	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10		561874	134444642	39	422											
SLC25A22	79751	mdanderson.org	37	chr11	791955	791955	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagccccagcagggactccGcgatgcccaggaagtagacc	13	15	0	1	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001191060	exon10	c.C932A	p.A311E	GACTCCGCGATGC		22	2	0.09	22	0	0				93	0	0				T	791955	G	T	791955	3	4	7	1	0	0	0	0	1	0	0	0	14539	1087	38	1	43	1	SLC25A22	11	791955	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	230081	791955	134214561	40	423											
TSPAN4	7106	mdanderson.org	37	chr11	864454	864454	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttcttcctgctgctgctGctggtgttcctgctggaggc	13	12	1	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001025237	exon5	c.G273T	p.L91L	GCTGCTGCTGGTG		44	3	0.07	40	0	0				212	0	0				T	864454	G	T	864454	2	4	7	1	0	0	0	0	0	0	0	1	16709	1306	46	2		2	TSPAN4	11	864454	Silent	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	72499	864454	134142062	41	424											
DCHS1	8642	mdanderson.org	37	chr11	6653426	6653426	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaggaaggtgggatcctcaGacaagcggggactgtgttca	15	9	2	1	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_003737	exon6	c.C3317A	p.S1106Y	TCCTCAGACAAGC		49	3	0.06	78	0	0				17	0	0				T	6653426	G	T	6653426	3	4	7	1	0	0	0	0	1	0	0	0	4310	942	33	3	6643	3	DCHS1	11	6653426	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	5788972	6653426	128353090	42	425											
ABCC8	6833	bcgsc.ca	37	chr11	17464362	17464362	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaagatgttctcccaggcgTacagcttcagcagcttgatg	12	10	2	2	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	ABCC8	NM_000352	exon10	c.A1535G	p.Y512C	CAGGCGTACAGCT		38	0	0	56	0	0		170		0	0					C	17464362	T	C	17464362	3	2	7	1	0	0	0	0	1	0	0	0	58	1638	57	4	3330	4	ABCC8	11	17464362	Missense_Mutation	SNP	T	TCGA-2G-AAFG-01A-11D-A42Y-10	10810936	17464362	117542154	43	426											
BCL9L	283149	mdanderson.org	37	chr11	118771819	118771819	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgcccacgttgctcatgGgcattgagctctgatcaggg	14	10	3	2	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_182557	exon6	c.C2633A	p.P878H	CTCATGGGCATTG		47	3	0.06	62	0	0				13	0	0				T	118771819	G	T	118771819	3	4	7	1	0	0	0	0	1	0	0	0	1380	1232	43	3	1878	3	BCL9L	11	118771819	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	101307457	118771819	16234697	44	427											
SLC37A2	219855	mdanderson.org	37	chr11	124951662	124951662	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgctcagggtgagccagctGagaaccaggacaaccctgag	13	12	1	3	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_198277	exon9	c.G745T	p.E249X	CCAGCTGAGAACC		37	3	0.08	71	0	0				19	0	0				T	124951662	G	T	124951662	4	4	7	1	0	0	0	0	0	1	0	0	14652	1291	45	3	779	3	SLC37A2	11	124951662	Nonsense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	6179843	124951662	10054854	45	428											
KRT74	121391	mdanderson.org	37	chr12	52967458	52967458	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcccctctgccagctgcaCagtaagaagccaggctaccc	9	17	1	1	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_175053	exon1	c.G104T	p.C35F	GCTGCACAGTAAG		46	3	0.07	67	0	0				0	0					A	52967458	C	A	52967458	3	1	7	1	0	0	0	0	1	0	0	0	8529	478	17	3	1521	3	KRT74	12	52967458	Missense_Mutation	SNP	C	TCGA-2G-AAFG-01A-11D-A42Y-10		52967458	80884437	46	429											
ANKS1B	56899	broad.mit.edu;mdanderson.org	37	chr12	100200303	100200303	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcattaagttaggatgtGcactgatgatcatttttacc	8	7	2	2	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	ANKS1B	NM_152788	exon4	c.C548A	p.A183E	GGATGTGCACTGA		113	5	0.04	149	0	0		180		0	0					T	100200303	G	T	100200303	3	4	7	1	0	0	0	0	1	0	0	0	683	1319	46	2	3578	2	ANKS1B	12	100200303	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	47232845	100200303	33651592	47	430											
UBE3B	89910	hgsc.bcm.edu	37	chr12	109972569	109972569	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacgccatcagcatgaacacGggctttgaactctcctagct	8	13	2	2	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	UBE3B,colon,carcinoma,0,1	UBE3B	NM_130466	exon28	c.G3189T	p.T1063T	GAACACGGGCTTT		65	3	0.05	61	0	0		0	1	105	0	0				T	109972569	G	T	109972569	2	4	7	1	0	0	0	0	0	0	0	1	16940	1103	39	1		1	UBE3B	12	109972569	Silent	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	9772266	109972569	23879326	48	431											
MED13L	23389	mdanderson.org	37	chr12	116420941	116420941	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctctcttgtccatcctgtgAgggctgagaagagctctgcc	11	13	2	3	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	MED13L,NS,carcinoma,0,1	MED13L	NM_015335	exon21	c.T4936C	p.S1646P	CCTGTGAGGGCTG		57	3	0.05	74	0	0		0	1	36	0	0				G	116420941	A	G	116420941	3	3	7	1	0	0	0	0	1	0	0	0	9480	304	11	4	1740	4	MED13L	12	116420941	Missense_Mutation	SNP	A	TCGA-2G-AAFG-01A-11D-A42Y-10	6448372	116420941	17430954	49	432											
PXN	5829	mdanderson.org	37	chr12	120659472	120659472	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcgtccagctccctggtgGcagaggaggccgagatgcgt	16	12	0	2	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001243756	exon6	c.C785A	p.A262D	CTGGTGGCAGAGG		14	2	0.14	26	0	0				135	0	0				T	120659472	G	T	120659472	3	4	7	1	0	0	0	0	1	0	0	0	12903	1203	42	2	1018	2	PXN	12	120659472	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	4238531	120659472	13192423	50	433											
STARD13	90627	mdanderson.org	37	chr13	33701523	33701523	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacgcaccatgtccagccgtGcttgttggacatggagtgct	12	11	0	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_178006	exon6	c.C1909A	p.H637N	AGCCGTGCTTGTT		21	2	0.1	27	0	0				6	0	0				T	33701523	G	T	33701523	3	4	7	1	0	0	0	0	1	0	0	0	15311	1319	46	2	1468	2	STARD13	13	33701523	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10		33701523	81468355	51	434											
PROZ	8858	mdanderson.org	37	chr13	113813044	113813044	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatcgtgtggagccctcaGgtaggcatctggcttacctg	12	12	2	0	rs1885956	bycluster;byhapmap;alternate_allele	TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001256134	exon1	c.G70T	p.A24S	CCCTCAGGTAGGC		29	3	0.1	23	0	0				0	0					T	113813044	G	T	113813044	3	4	7	1	0	0	0	0	1	0	0	0	12613	1014	35	3	72	3	PROZ	13	113813044	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	80111521	113813044	1356834	52	435											
CUL4A	8451	bcgsc.ca	37	chr13	113898807	113898807	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggacgttggacaagatcatgAtcctgttcaggtttatccac	10	9	2	2	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	CUL4A	NM_001008895	exon12	c.A1312T	p.I438F	ATCATGATCCTGT		150	0	0	213	0	0		50		68	0	0				T	113898807	A	T	113898807	3	4	7	1	0	0	0	0	1	0	0	0	4080	333	12	5	1358	5	CUL4A	13	113898807	Missense_Mutation	SNP	A	TCGA-2G-AAFG-01A-11D-A42Y-10	85763	113898807	1271071	53	436											
SLC12A6	9990	mdanderson.org	37	chr15	34547512	34547512	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acatggctgctgcaaatgtgGtaccaagataaaagcagagg	12	7	0	2	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_133647	exon7	c.C827A	p.T276N	AATGTGGTACCAA		47	3	0.06	45	0	0				20	0	0				T	34547512	G	T	34547512	3	4	7	1	0	0	0	0	1	0	0	0	14441	1261	44	3	2701	3	SLC12A6	15	34547512	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10		34547512	67983880	54	437											
ATP8B4	79895	broad.mit.edu	37	chr15	50223331	50223331	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catacctatgacagacatccTttttctggtgttgttgaaat	7	8	1	3	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	ATP8B4	NM_024837	exon16	c.A1627G	p.R543G	ACATCCTTTTTCT		165	3	0.02	148	0	0		173		1	0	0				C	50223331	T	C	50223331	3	2	7	1	0	0	0	0	1	0	0	0	1195	1608	56	4	2003	4	ATP8B4	15	50223331	Missense_Mutation	SNP	T	TCGA-2G-AAFG-01A-11D-A42Y-10	15675819	50223331	52308061	55	438											
USP8	9101	mdanderson.org	37	chr15	50733583	50733583	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaagatctttaagacagcaGaagaatgcagattagatcgt	10	5	1	7	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001128610	exon3	c.G142T	p.E48X	ACAGCAGAAGAAT		45	3	0.07	42	0	0				57	0	0				T	50733583	G	T	50733583	4	4	7	1	0	0	0	0	0	1	0	0	17148	943	33	3	148	3	USP8	15	50733583	Nonsense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	510252	50733583	51797809	56	439											
HERC1	8925	mdanderson.org	37	chr15	63958659	63958659	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttgaaagtctactgcttGggtctgacaaggctgagaca	12	7	2	3	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_003922	exon41	c.C8219A	p.P2740Q	CTGCTTGGGTCTG		51	3	0.06	56	0	0				17	0	0				T	63958659	G	T	63958659	3	4	7	1	0	0	0	0	1	0	0	0	7097	1348	47	3	6518	3	HERC1	15	63958659	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	13225076	63958659	38572733	57	440											
HCN4	10021	mdanderson.org	37	chr15	73660063	73660063	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	actttgatagcggtgtccacCgagggctgctcgcaggaggc	15	11	0	1	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_005477	exon1	c.G549T	p.S183S	GTCCACCGAGGGC		16	2	0.13	16	0	0				4	0	0				A	73660063	C	A	73660063	2	1	7	1	0	0	0	0	0	0	0	1	7039	639	23	1		1	HCN4	15	73660063	Silent	SNP	C	TCGA-2G-AAFG-01A-11D-A42Y-10	9701404	73660063	28871329	58	441											
PKD1	5310	mdanderson.org	37	chr16	2143982	2143982	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggaggcacaccaggccgGcagcaggcgcttccgcagac	15	15	0	1	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001009944	exon36	c.C10651A	p.P3551T	AGGCCGGCAGCAG		16	2	0.13	31	0	0				27	0	0				T	2143982	G	T	2143982	3	4	7	1	0	0	0	0	1	0	0	0	12010	1203	42	2	2304	2	PKD1	16	2143982	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10		2143982	88210771	59	442											
GLYR1	84656	mdanderson.org	37	chr16	4855285	4855285	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatatcgttgtcagactgGtccagcgccttggctctttt	10	11	2	1	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_032569	exon16	c.C1614A	p.D538E	AGACTGGTCCAGC		50	3	0.06	48	0	0				105	0	0				T	4855285	G	T	4855285	3	4	7	1	0	0	0	0	1	0	0	0	6524	1252	44	3	51	3	GLYR1	16	4855285	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	2711303	4855285	85499468	60	443											
GPRC5B	51704	mdanderson.org	37	chr16	19871856	19871856	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgtgtgacttggcggaGcagttgggatctggaataac	14	7	1	1	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_016235	exon4	c.C1178A	p.A393D	GGCGGAGCAGTTG		53	3	0.06	62	0	0				140	0	0				T	19871856	G	T	19871856	3	4	7	1	0	0	0	0	1	0	0	0	6765	971	34	2	37	2	GPRC5B	16	19871856	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	15016571	19871856	70482897	61	444											
SMPD3	55512	mdanderson.org	37	chr16	68405129	68405129	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtacaggagcttgctgttgGcacctggctccccgctggca	13	13	0	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_018667	exon3	c.C956A	p.A319D	CTGTTGGCACCTG		35	3	0.09	34	0	0				1	0	0				T	68405129	G	T	68405129	3	4	7	1	0	0	0	0	1	0	0	0	14859	1203	42	2	1039	2	SMPD3	16	68405129	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	48533273	68405129	21949624	62	445											
ZC3H18	124245	broad.mit.edu	37	chr16	88664670	88664670	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccctaatcaccaaagccgAccccttcccgcctaatggtg	6	18	1	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	ZC3H18,NS,carcinoma,+1,1	ZC3H18	NM_144604	exon4	c.A773C	p.D258A	AAGCCGACCCCTT		45	14	0.31	54	9	0.1666666667		90	1	84	6	0.07				C	88664670	A	C	88664670	3	2	7	1	0	0	0	0	1	0	0	0	17626	275	10	4	783	4	ZC3H18	16	88664670	Missense_Mutation	SNP	A	TCGA-2G-AAFG-01A-11D-A42Y-10	20259541	88664670	1690083	63	446											
C1QBP	708	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr17	5336638	5336638	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggaatctgtgttgagtGtataattagtatccttccat	8	7	1	1	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_001212	exon5	c.C674T	p.T225I	TTGAGTGTATAAT		130	11	0.08	136	0	0				1771	328	0.19				A	5336638	G	A	5336638	3	1	7	1	0	0	0	0	1	0	0	0	1969	1377	48	3	182	3	C1QBP	17	5336638	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10		5336638	75858572	64	447											
ANKRD13B	124930	mdanderson.org	37	chr17	27936112	27936112	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgtctggcagacacaagcGccgtggtcatggagattgac	14	10	2	3	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_152345	exon6	c.G574T	p.A192S	ACAAGCGCCGTGG		44	3	0.07	34	0	0				0	0					T	27936112	G	T	27936112	3	4	7	1	0	0	0	0	1	0	0	0	638	1087	38	1	596	1	ANKRD13B	17	27936112	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	22599474	27936112	53259098	65	448											
RHOT1	55288	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr17	30536465	30536465	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctttctaaaaactgctttGtaagttactttttctttatg	5	6	3	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	RHOT1	NM_001033568	exon19	c.1835+1G>T	.	TGCTTTGTAAGTT		34	4	0.12	31	0	0		69		0	0					T	30536465	G	T	30536465	5	4	7	1	0	0	0	0	0	0	1	0	13392	1391	48	3	1910	3	RHOT1	17	30536465	Splice_Site	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	2600353	30536465	50658745	66	449											
ERBB2	2064	broad.mit.edu	37	chr17	37884152	37884152	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aggagctgcccctcagccccAccctcctcctgccttcagcc	7	22	2	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	ERBB2	NM_004448	exon27	c.A3623C	p.H1208P	AGCCCCACCCTCC		123	10	0.08	101	6	0.0594059406		429		71	2	0.03				C	37884152	A	C	37884152	3	2	7	1	0	0	0	0	1	0	0	0	5234	159	6	4	3729	4	ERBB2	17	37884152	Missense_Mutation	SNP	A	TCGA-2G-AAFG-01A-11D-A42Y-10	7347687	37884152	43311058	67	450											
LUC7L3	51747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	48821082	48821082	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaagattgaagaattagggTctgaaggaaaagtagaagaa	12	2	1	6	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_006107	exon6	c.T442A	p.S148T	TTAGGGTCTGAAG		135	24	0.18	139	0	0				463	107	0.23				A	48821082	T	A	48821082	3	1	7	1	0	0	0	0	1	0	0	0	9128	1667	58	5	464	5	LUC7L3	17	48821082	Missense_Mutation	SNP	T	TCGA-2G-AAFG-01A-11D-A42Y-10	10936930	48821082	32374128	68	451											
GGA3	23163	mdanderson.org	37	chr17	73236094	73236094	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcttgggagctgcttgaGgagggggctgagggctggag	23	5	0	2	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_138619	exon13	c.C1359A	p.S453S	GCTTGAGGAGGGG		43	3	0.07	43	0	0				112	0	0				T	73236094	G	T	73236094	2	4	7	1	0	0	0	0	0	0	0	1	6395	987	35	3		3	GGA3	17	73236094	Silent	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	24415012	73236094	7959116	69	452											
DOHH	83475	mdanderson.org	37	chr19	3496779	3496779	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggggtccaccagcgtctGcccgatggcatccacctcct	10	17	1	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	DOHH,NS,carcinoma,+2,1	DOHH	NM_001145165	exon2	c.C34A	p.Q12K	GCGTCTGCCCGAT		33	3	0.09	18	0	0		2	1	95	0	0				T	3496779	G	T	3496779	3	4	7	1	0	0	0	0	1	0	0	0	4722	1328	46	2	890	2	DOHH	19	3496779	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10		3496779	55632204	70	453											
SAFB	6294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	5667118	5667118	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactcccgcgatggctgggGgggctatggctctgacaaga	17	10	1	2	rs201604799	by1000genomes;alternate_allele	TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_002967	exon18	c.G2396T	p.G799V	GCTGGGGGGGCTA		126	25	0.2	124	0	0				434	134	0.31				T	5667118	G	T	5667118	3	4	7	1	0	0	0	0	1	0	0	0	13857	1232	43	3	2466	3	SAFB	19	5667118	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	2170339	5667118	53461865	71	454											
SLC25A23	79085	mdanderson.org	37	chr19	6442129	6442129	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggacaggatgtgacgtaGcagacccagcatggacagct	14	10	0	2	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_024103	exon10	c.C1264A	p.L422I	GACGTAGCAGACC		44	3	0.07	43	0	0				48	0	0				T	6442129	G	T	6442129	3	4	7	1	0	0	0	0	1	0	0	0	14540	962	34	2	146	2	SLC25A23	19	6442129	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	775011	6442129	52686854	72	455											
CBLC	23624	mdanderson.org	37	chr19	45284237	45284237	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactcttccccgggggaaaGtactgtggacacatgtacca	11	12	1	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_012116	exon2	c.G429T	p.K143N	GGGAAAGTACTGT		48	3	0.06	55	0	0				4	0	0				T	45284237	G	T	45284237	3	4	7	1	0	0	0	0	1	0	0	0	2720	1020	36	3	435	3	CBLC	19	45284237	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	38842108	45284237	13844746	73	456											
PYGB	5834	mdanderson.org	37	chr20	25262727	25262727	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agaataagaccaatggcatcAccccccgccggtggctgctg	11	14	1	2	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_002862	exon12	c.A1462C	p.T488P	GGCATCACCCCCC		49	19	0.39	40	7	0.175				980	246	0.25				C	25262727	A	C	25262727	3	2	7	1	0	0	0	0	1	0	0	0	12911	159	6	4	1508	4	PYGB	20	25262727	Missense_Mutation	SNP	A	TCGA-2G-AAFG-01A-11D-A42Y-10		25262727	37762793	74	457											
DLGAP4	22839	broad.mit.edu	37	chr20	35075236	35075236	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcagccacagctacctgcGtgccatccaggcaggctgct	11	17	0	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	DLGAP4,colon,carcinoma,+1,1	DLGAP4	NM_014902	exon6	c.G1544T	p.R515L	ACCTGCGTGCCAT		107	4	0.04	122	0	0		111	1	20	0	0				T	35075236	G	T	35075236	3	4	7	1	0	0	0	0	1	0	0	0	4590	1145	40	1	1562	1	DLGAP4	20	35075236	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	9812509	35075236	27950284	75	458											
LAMA5	3911	mdanderson.org	37	chr20	60903333	60903333	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtcacaggtagggtctGtgagctcctggatgccgggc	16	10	2	1	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_005560	exon35	c.C4616A	p.T1539K	GGGTCTGTGAGCT		36	3	0.08	69	0	0				65	0	0				T	60903333	G	T	60903333	3	4	7	1	0	0	0	0	1	0	0	0	8647	1377	48	3	6655	3	LAMA5	20	60903333	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	25828097	60903333	2122187	76	459											
SREBF2	6721	mdanderson.org	37	chr22	42293166	42293166	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgctcaagtccgccctggGtaagcacctgcgggtggccc	14	15	1	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_004599	exon14	c.2605+1G>T	.	CCCTGGGTAAGCA		41	3	0.07	42	0	0				4	0	0				T	42293166	G	T	42293166	5	4	7	1	0	0	0	0	0	0	1	0	15197	1275	44	3	2660	3	SREBF2	22	42293166	Splice_Site	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10		42293166	9011400	77	460											
NAP1L3	4675	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	92927246	92927246	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	attcaaaggtgtaacttacaGgctggccaggttttgagaac	11	7	1	1	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	NAP1L3	NM_004538	exon1	c.C1058G	p.P353R	CTTACAGGCTGGC		114	30	0.26	98	1	0.0102040816		81		20	6	0.3				C	92927246	G	C	92927246	3	2	7	1	0	0	0	0	1	0	0	0	10205	1000	35	5	466	5	NAP1L3	23	92927246	Missense_Mutation	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10		92927246	62343314	78	461											
PNCK	139728	broad.mit.edu	37	chrX	152939604	152939604	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccgaggacaggctgacccGgccacttgcccgaaagcagc	12	16	0	1	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	PNCK	NM_001039582	exon1	c.C27A	p.A9A	TGACCCGGCCACT		54	4	0.07	32	0	0		70		1	0	0				T	152939604	G	T	152939604	2	4	7	1	0	0	0	0	0	0	0	1	12192	1103	39	1		1	PNCK	23	152939604	Silent	SNP	G	TCGA-2G-AAFG-01A-11D-A42Y-10	60012358	152939604	2330956	79	462											
ABCD1	215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chrX	152991228	152991228	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcagccgtctggtggcccaCgcctaccgcctctacttctc	9	19	3	0	novel		TCGA-2G-AAFG-01A-11D-A42Y-10	TCGA-2G-AAFG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bb18732a-4468-45f8-b285-a159c6251ec5	b3717c8e-343c-48c0-8d20-5035da43230c	.	.	NM_000033	exon1	c.C507A	p.H169Q	GGCCCACGCCTAC		61	10	0.16	58	0	0				41	9	0.22				A	152991228	C	A	152991228	3	1	7	1	0	0	0	0	1	0	0	0	60	535	19	1	509	1	ABCD1	23	152991228	Missense_Mutation	SNP	C	TCGA-2G-AAFG-01A-11D-A42Y-10	51624	152991228	2279332	80	463											
MTHFR	4524	broad.mit.edu	37	chr1	11854879	11854879	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgggacgtacatcttcctctCggcgcttggggtgggcgctg	16	11	2	0	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	MTHFR	NM_005957	exon7	c.G1073A	p.R358Q	TCCTCTCGGCGCT		111	4	0.04	83	0	0		65		11	0	0				T	11854879	C	T	11854879	3	4	8	1	0	0	0	0	1	0	0	0	9978	884	31	1	921	1	MTHFR	1	11854879	Missense_Mutation	SNP	C	TCGA-2G-AAFH-01A-12D-A42Y-10		11854879	237395742	1	464											
CROCC	9696	broad.mit.edu	37	chr1	17270665	17270665	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aggagctgcggcaggagcggGagaagctgcaggctgcccag	19	10	0	1	rs199948035		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	CROCC	NM_014675	exon14	c.G1879A	p.E627K	GAGCGGGAGAAGC		118	6	0.05	75	3	0.04		185		26	0	0				A	17270665	G	A	17270665	3	1	8	1	0	0	0	0	1	0	0	0	3916	1175	41	3	1933	3	CROCC	1	17270665	Missense_Mutation	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10	5415786	17270665	231979956	2	465											
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr1	19483407	19483407	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcaggagtgcagagagctGcagaacggtgatctgcaaag	14	8	2	3	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_020765	exon41	c.C5773T	p.Q1925X	AGAGCTGCAGAAC		292	43	0.15	226	0	0				25	1	0.04				A	19483407	G	A	19483407	4	1	8	1	0	0	0	0	0	1	0	0	16964	1328	46	2	10042	2	UBR4	1	19483407	Nonsense_Mutation	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10	2212742	19483407	229767214	3	466											
PARS2	25973	broad.mit.edu	37	chr1	55224781	55224781	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acatacccagagagctggcgGctgcaggtggccagggcggg	18	11	0	1	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	PARS2,NS,carcinoma,0,2	PARS2	NM_152268	exon2	c.C54A	p.S18R	CTGGCGGCTGCAG		133	7	0.05	114	1	0.0087719298		29	2	23	0	0				T	55224781	G	T	55224781	3	4	8	1	0	0	0	0	1	0	0	0	11513	1194	42	2	1377	2	PARS2	1	55224781	Missense_Mutation	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10	35741374	55224781	194025840	4	467											
RPL5	6125	broad.mit.edu	37	chr1	93300360	93300361	+	Frame_Shift_Ins	INS	-	-	AT													ttatgcccgtatagagggggINSatatgatagtctgcgcagcg					novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	RPL5	NM_000969	exon4	c.214_215insAT	p.D72fs	GAGGGGGATATGA		40	7	0.18	32	0	0		38		2622	0	0				AT	93300361	-	AT	93300360	7	5	8	1	0	1	1	0	0	0	0	0	13648	1174	41	0	228	0	RPL5	1	93300360	Frame_Shift_Ins	INS	-	TCGA-2G-AAFH-01A-12D-A42Y-10	38075579	93300360	155950261	5	468											
TCHH	7062	broad.mit.edu	37	chr1	152084619	152084621	+	In_Frame_Del	DEL	CTC	CTC	-													ctcagctgctgctcgcgcctCtcctcctcctgctcgcgcct					novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	CTC	CTC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	TCHH	NM_007113	exon3	c.1072_1074del	p.358_358del	GCGCCTCTCCTCC		25	7	0.28	10	0	0		275		0	0					-	152084621	CTC	-	152084619	7	5	8	1	0	1	0	1	0	0	0	0	15759	912	32	0	4761	0	TCHH	1	152084619	In_Frame_Del	DEL	CTC	TCGA-2G-AAFH-01A-12D-A42Y-10	58784259	152084619	97166002	6	469											
PCP4L1	654790	broad.mit.edu	37	chr1	161254255	161254255	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgatttcagaaaaggaaaaAggatcccagctcctgaatgg	11	8	1	2	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	PCP4L1	NM_001102566	exon3	c.A191G	p.K64R	GGAAAAAGGATCC		534	5	0.01	405	2	0.0049382716		7		0	0					G	161254255	A	G	161254255	3	3	8	1	0	0	0	0	1	0	0	0	11645	72	3	4	201	4	PCP4L1	1	161254255	Missense_Mutation	SNP	A	TCGA-2G-AAFH-01A-12D-A42Y-10	9169636	161254255	87996366	7	470											
MFSD4	148808	broad.mit.edu;mdanderson.org	37	chr1	205538281	205538281	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tggagcgtcttcttcagcttCggcctgtgcatcgccttcct	10	14	3	0	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	MFSD4	NM_181644	exon1	c.C84T	p.F28F	CAGCTTCGGCCTG		94	5	0.05	59	0	0		46		0	0					T	205538281	C	T	205538281	2	4	8	1	0	0	0	0	0	0	0	1	9582	883	31	1		1	MFSD4	1	205538281	Silent	SNP	C	TCGA-2G-AAFH-01A-12D-A42Y-10	44284026	205538281	43712340	8	471											
OR2T4	127074	hgsc.bcm.edu	37	chr1	248525639	248525640	+	Missense_Mutation	DNP	AT	AT	CC													tttcaagctcctatttactcAtcctcctcaccatccacggg					novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	AT	AT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	OR2T4,brain,glioma,+1,1	OR2T4	NM_001004696	exon1	c.T758C	p.I253P	TTACTCATCCTCC		657	17	0.03	461	1	0.0021691974		1	1	0	0					CC	248525640	AT	CC	248525639	3	2	8	1	0	0	0	0	1	0	0	0	11074	217	8	4	759	4	OR2T4	1	248525639	Missense_Mutation	DNP	AT	TCGA-2G-AAFH-01A-12D-A42Y-10	42987358	248525639	724982	9	472											
CNNM3	26505	mdanderson.org	37	chr2	97482998	97482998	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagactgcttcatgctggaCgccagcaccgtgctggactt	12	12	1	1	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_017623	exon1	c.C984T	p.D328D	GCTGGACGCCAGC		42	3	0.07	27	0	0				33	0	0				T	97482998	C	T	97482998	2	4	8	1	0	0	0	0	0	0	0	1	3637	535	19	1		1	CNNM3	2	97482998	Silent	SNP	C	TCGA-2G-AAFH-01A-12D-A42Y-10		97482998	145716375	10	473											
KIF5C	3800	broad.mit.edu	37	chr2	149866823	149866823	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcgtatcaaggaggccgtgCgggccaagaacatggccaga	14	10	1	2	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	KIF5C	NM_004522	exon24	c.C2725T	p.R909W	GCCGTGCGGGCCA		261	7	0.03	214	0	0		166		1	0	0				T	149866823	C	T	149866823	3	4	8	1	0	0	0	0	1	0	0	0	8348	759	27	1	2741	1	KIF5C	2	149866823	Missense_Mutation	SNP	C	TCGA-2G-AAFH-01A-12D-A42Y-10	52383825	149866823	93332550	11	474											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179399008	179399008	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgaattgcaccaccacaggAgatccgggctgctgacacaa	10	13	0	2	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_001267550	exon358	c.T102334A	p.S34112T	CACAGGAGATCCG		181	53	0.29	131	0	0				0	0					T	179399008	A	T	179399008	3	4	8	1	0	0	0	0	1	0	0	0	16796	304	11	5	5665	5	TTN	2	179399008	Missense_Mutation	SNP	A	TCGA-2G-AAFH-01A-12D-A42Y-10	29532185	179399008	63800365	12	475											
IKZF2	22807	broad.mit.edu	37	chr2	214012404	214012405	+	Frame_Shift_Del	DEL	AA	AA	-													ctggagagacacacacacacAaaaaaaaatcataaaatgaa					rs112988286	bycluster	TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	AA	AA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	IKZF2	.	.	.	.	ACACACAAAAAAA		63	0	0	47	0	0		71		0	0					-	214012405	AA	-	214012404	7	5	8	1	0	1	0	1	0	0	0	0	7658	145	5	0		0	IKZF2	2	214012404	Frame_Shift_Del	DEL	AA	TCGA-2G-AAFH-01A-12D-A42Y-10	34613396	214012404	29186969	13	476											
ANO7	50636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	242163124	242163124	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggacctcctggtgcctgaCatcccagagtctgtggagat	12	12	1	3	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	ANO7,colon,carcinoma,+1,1	ANO7	NM_001001891	exon23	c.C2622G	p.D874E	GCCTGACATCCCA		212	50	0.24	129	0	0		1	1	5	1	0.2				G	242163124	C	G	242163124	3	3	8	1	0	0	0	0	1	0	0	0	696	477	17	5	2784	5	ANO7	2	242163124	Missense_Mutation	SNP	C	TCGA-2G-AAFH-01A-12D-A42Y-10	28150720	242163124	1036249	14	477											
FBXL2	25827	mdanderson.org	37	chr3	33416789	33416789	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cttttcctcagcgtatcacgGatgaaggtgtggtgcagata	12	8	2	2	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_012157	exon10	c.G667T	p.D223Y	ATCACGGATGAAG		58	3	0.05	48	0	0				0	0					T	33416789	G	T	33416789	3	4	8	1	0	0	0	0	1	0	0	0	5748	1174	41	3	705	3	FBXL2	3	33416789	Missense_Mutation	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10		33416789	164605641	15	478											
STAB1	23166	mdanderson.org	37	chr3	52542370	52542370	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaacccctgctatggcaaaGgcaatgtgagtcccatcctc	8	15	0	1	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_015136	exon21	c.G2230T	p.G744C	GGCAAAGGCAATG		50	3	0.06	39	0	0				16	0	0				T	52542370	G	T	52542370	3	4	8	1	0	0	0	0	1	0	0	0	15292	1000	35	3	2312	3	STAB1	3	52542370	Missense_Mutation	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10	19125581	52542370	145480060	16	479											
PBRM1	55193	broad.mit.edu	37	chr3	52677350	52677350	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtctggctgcagccaagttGgatggagtcctatccagaga	13	9	1	1	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	PBRM1	NM_018313	exon10	c.C909A	p.S303S	CAAGTTGGATGGA		126	4	0.03	78	0	0		1252		25	0	0				T	52677350	G	T	52677350	2	4	8	1	0	0	0	0	0	0	0	1	11537	1335	47	3		3	PBRM1	3	52677350	Silent	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10	134980	52677350	145345080	17	480											
DHFRL1	200895	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	93779801	93779803	+	In_Frame_Del	DEL	CTT	CTT	-													acaccttcatattaatcatcCttctcacatacttcaaattt					novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	CTT	CTT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	DHFRL1	NM_001195643	exon2	c.554_556del	p.185_186del	ATCATCCTTCTCA		94	10	0.11	98	0	0		25		2	0	0				-	93779803	CTT	-	93779801	7	5	8	1	0	1	0	1	0	0	0	0	4510	680	24	0	12	0	DHFRL1	3	93779801	In_Frame_Del	DEL	CTT	TCGA-2G-AAFH-01A-12D-A42Y-10	41102451	93779801	104242629	18	481											
SLC1A3	6507	mdanderson.org	37	chr5	36677031	36677031	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagagaagctttaaagtgcCcatccaggccaacgaaacgc	10	11	0	1	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_004172	exon6	c.C605T	p.P202L	AAGTGCCCATCCA		61	3	0.05	81	0	0				9	0	0				T	36677031	C	T	36677031	3	4	8	1	0	0	0	0	1	0	0	0	14487	623	22	3	640	3	SLC1A3	5	36677031	Missense_Mutation	SNP	C	TCGA-2G-AAFH-01A-12D-A42Y-10		36677031	144238229	19	482											
CCDC152	100129792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	42799496	42799496	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gtttgatgccaaactagcaaGagttcagactaaatcaaaat	7	7	2	3	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_001134848	exon8	c.G578C	p.R193T	TAGCAAGAGTTCA		145	26	0.18	198	0	0				20	6	0.3				C	42799496	G	C	42799496	3	2	8	1	0	0	0	0	1	0	0	0	2805	942	33	5	604	5	CCDC152	5	42799496	Missense_Mutation	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10	6122465	42799496	138115764	20	483											
NSD1	64324	broad.mit.edu	37	chr5	176638303	176638303	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacacacaattcagagaaaaAgggagatggcactcagaact	9	9	2	3	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	NSD1_ENST00000439151,colon,carcinoma,0,2	NSD1	NM_022455	exon5	c.A2903G	p.K968R	AGAAAAAGGGAGA		210	3	0.01	223	1	0.0044843049		416	2	40	0	0				G	176638303	A	G	176638303	3	3	8	1	0	0	0	0	1	0	0	0	10716	72	3	4	2917	4	NSD1	5	176638303	Missense_Mutation	SNP	A	TCGA-2G-AAFH-01A-12D-A42Y-10	133838807	176638303	4276957	21	484											
HIST1H3C	8352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	26045698	26045698	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcaaagctccgcgcaagcaGcttgctactaaagcagcccg	11	14	0	0	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_003531	exon1	c.G60A	p.Q20Q	CAAGCAGCTTGCT		165	33	0.2	103	0	0				27	8	0.3				A	26045698	G	A	26045698	2	1	8	1	0	0	0	0	0	0	0	1	7197	962	34	2		2	HIST1H3C	6	26045698	Silent	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10		26045698	145069369	22	485											
CDSN	1041	mdanderson.org	37	chr6	31084507	31084507	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccacccaccacctcgtaGccaccataggatttgtctac	7	16	1	0	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_001264	exon2	c.C885A	p.G295G	CTCGTAGCCACCA		49	3	0.06	32	0	0				0	0					T	31084507	G	T	31084507	2	4	8	1	0	0	0	0	0	0	0	1	3201	958	34	2		2	CDSN	6	31084507	Silent	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10	5038809	31084507	140030560	23	486											
CUL9	23113	mdanderson.org	37	chr6	43153342	43153342	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctttgagggcattcatctGcctcaggtacactgccagct	10	13	3	1	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_015089	exon3	c.G744T	p.L248L	TCATCTGCCTCAG		32	3	0.09	24	0	0				6	0	0				T	43153342	G	T	43153342	2	4	8	1	0	0	0	0	0	0	0	1	4084	1306	46	2		2	CUL9	6	43153342	Silent	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10	12068835	43153342	127961725	24	487											
POPDC3	64208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	105609640	105609640	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actgaagacataaaggagccCgaagaatccactgccaccca	8	13	0	3	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_022361	exon2	c.G145A	p.G49R	GGAGCCCGAAGAA		157	21	0.13	147	0	0				0	0					T	105609640	C	T	105609640	3	4	8	1	0	0	0	0	1	0	0	0	12303	652	23	1	742	1	POPDC3	6	105609640	Missense_Mutation	SNP	C	TCGA-2G-AAFH-01A-12D-A42Y-10	62456298	105609640	65505427	25	488											
SEMA3E	9723	broad.mit.edu	37	chr7	83277770	83277770	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgacaggcgtaaccgggggTgggtagtatcagctgtatga	17	6	1	2	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	SEMA3E	NM_012431	exon1	c.A89C	p.H30P	CGGGGGTGGGTAG		296	47	0.16	145	20	0.1379310345		125		0	0					G	83277770	T	G	83277770	3	3	8	1	0	0	0	0	1	0	0	0	14081	1696	59	4	2306	4	SEMA3E	7	83277770	Missense_Mutation	SNP	T	TCGA-2G-AAFH-01A-12D-A42Y-10		83277770	75860893	26	489											
EPHB4	2050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	100419938	100419938	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcctcgaaccccggagcacAgctgcagcccgtgaccggct	12	17	0	1	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_004444	exon4	c.T763G	p.C255G	GAGCACAGCTGCA		126	15	0.12	47	0	0				656	181	0.28				C	100419938	A	C	100419938	3	2	8	1	0	0	0	0	1	0	0	0	5205	188	7	4	2256	4	EPHB4	7	100419938	Missense_Mutation	SNP	A	TCGA-2G-AAFH-01A-12D-A42Y-10	17142168	100419938	58718725	27	490											
MFHAS1	9258	broad.mit.edu	37	chr8	8749216	8749216	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgcccttgctcacagggggAggtgacggtgggtagcactt	16	9	1	1	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	MFHAS1	NM_004225	exon1	c.T1353C	p.P451P	AGGGGGAGGTGAC		91	3	0.03	63	0	0		58		19	0	0				G	8749216	A	G	8749216	2	3	8	1	0	0	0	0	0	0	0	1	9570	291	11	4		4	MFHAS1	8	8749216	Silent	SNP	A	TCGA-2G-AAFH-01A-12D-A42Y-10		8749216	137614806	28	491											
PCMTD1	115294	mdanderson.org	37	chr8	52733270	52733270	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgtagattcctgacagCacagggagctaaaaacaaac	9	10	0	2	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_052937	exon6	c.G715A	p.A239T	TGACAGCACAGGG		78	5	0.06	59	0	0				41	0	0				T	52733270	C	T	52733270	3	4	8	1	0	0	0	0	1	0	0	0	11632	710	25	2	362	2	PCMTD1	8	52733270	Missense_Mutation	SNP	C	TCGA-2G-AAFH-01A-12D-A42Y-10	43984054	52733270	93630752	29	492											
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	139629170	139629170	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacttacccggggaccgggtGcaccagaatcgcctgtgtgt	13	13	0	1	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	COL22A1,right_upper_lobe,carcinoma,-1,1	COL22A1	NM_152888	exon54	c.C3857T	p.A1286V	CCGGGTGCACCAG		91	17	0.19	88	0	0		-1	1	48	13	0.27				A	139629170	G	A	139629170	3	1	8	1	0	0	0	0	1	0	0	0	3704	1319	46	2	1071	2	COL22A1	8	139629170	Missense_Mutation	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10	86895900	139629170	6734852	30	493											
ODF2	4957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	131262420	131262420	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgagagcaccaaccgcagCatgcagaactacgtccagtt	9	14	0	2	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_153435	exon21	c.C2568T	p.S856S	CCGCAGCATGCAG		119	37	0.31	84	0	0				130	72	0.55				T	131262420	C	T	131262420	2	4	8	1	0	0	0	0	0	0	0	1	10874	709	25	2		2	ODF2	9	131262420	Silent	SNP	C	TCGA-2G-AAFH-01A-12D-A42Y-10		131262420	9951011	31	494											
IER5L	389792	mdanderson.org	37	chr9	131939453	131939453	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccggcggcggacgccagGcccggtcccggagcgccctg	17	18	0	0	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_203434	exon1	c.C879A	p.G293G	CGCCAGGCCCGGT		43	3	0.07	20	0	0				18	0	0				T	131939453	G	T	131939453	2	4	8	1	0	0	0	0	0	0	0	1	7552	1190	42	2		2	IER5L	9	131939453	Silent	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10	677033	131939453	9273978	32	495											
TAF5	6877	mdanderson.org	37	chr10	105147455	105147455	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atggtgaaattttggcatcaGgtaaatgactattaatggct	10	4	1	2	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_006951	exon10	c.G2185T	p.G729C	GCATCAGGTAAAT		24	3	0.13	40	0	0				27	0	0				T	105147455	G	T	105147455	3	4	8	1	0	0	0	0	1	0	0	0	15584	1014	35	3	2223	3	TAF5	10	105147455	Missense_Mutation	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10		105147455	30387292	33	496											
RTN3	10313	broad.mit.edu	37	chr11	63488321	63488321	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aaactttcacatttgctccaGaatcttggccacagagatca	6	11	3	2	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	RTN3	NM_001265589	exon3	c.G2347T	p.E783X	GCTCCAGAATCTT		75	5	0.07	72	0	0		104		3	0	0				T	63488321	G	T	63488321	4	4	8	1	0	0	0	0	0	1	0	0	13778	943	33	3	2357	3	RTN3	11	63488321	Nonsense_Mutation	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10		63488321	71518195	34	497											
BUD13	84811	mdanderson.org	37	chr11	116633790	116633790	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctgggaggagatgtgtctGagtcatgacgagcccctctg	14	10	3	3	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_001159736	exon4	c.C515A	p.S172X	GTGTCTGAGTCAT		49	3	0.06	56	1	0.0178571429				16	0	0				T	116633790	G	T	116633790	4	4	8	1	0	0	0	0	0	1	0	0	1576	1294	45	3	1372	3	BUD13	11	116633790	Nonsense_Mutation	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10	53145469	116633790	18372726	35	498											
KRT73	319101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	53002138	53002138	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcagcatgctgtagccccCgctgacagagctgggccagt	14	13	0	2	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_175068	exon9	c.G1465A	p.G489R	AGCCCCCGCTGAC		112	14	0.13	52	0	0				0	0					T	53002138	C	T	53002138	3	4	8	1	0	0	0	0	1	0	0	0	8528	652	23	1	161	1	KRT73	12	53002138	Missense_Mutation	SNP	C	TCGA-2G-AAFH-01A-12D-A42Y-10		53002138	80849757	36	499											
SELPLG	0	broad.mit.edu	37	chr12	109017521	109017521	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtggtctgtgcctccaggCctgtgggttgagtggtctgt	16	9	2	1	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	SELPLG	NM_001206609	exon2	c.G611C	p.G204A	TCCAGGCCTGTGG		185	9	0.05	113	2	0.017699115		138		75	0	0				G	109017521	C	G	109017521	3	3	8	1	0	0	0	0	1	0	0	0	14073	739	26	5	679	5	SELPLG	12	109017521	Missense_Mutation	SNP	C	TCGA-2G-AAFH-01A-12D-A42Y-10	56015383	109017521	24834374	37	500											
CCDC64	92558	mdanderson.org	37	chr12	120427769	120427769	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcccgccgcggccggggacGcagtccggagtcccgccgcc	16	19	0	0	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_207311	exon1	c.G97A	p.A33T	GGGGACGCAGTCC		23	2	0.09	14	0	0				22	0	0				A	120427769	G	A	120427769	3	1	8	1	0	0	0	0	1	0	0	0	2855	1087	38	1	99	1	CCDC64	12	120427769	Missense_Mutation	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10	11410248	120427769	13424126	38	501											
TMEM132B	114795	broad.mit.edu	37	chr12	125834096	125834096	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctccaatgcagaggagtccTttttccttaaagaagccaac	7	11	1	2	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	TMEM132B	NM_052907	exon2	c.T151C	p.F51L	GAGTCCTTTTTCC		337	4	0.01	163	0	0		207		1	0	0				C	125834096	T	C	125834096	3	2	8	1	0	0	0	0	1	0	0	0	16105	1609	56	4	157	4	TMEM132B	12	125834096	Missense_Mutation	SNP	T	TCGA-2G-AAFH-01A-12D-A42Y-10	5406327	125834096	8017799	39	502											
NKX2-1	7080	broad.mit.edu	37	chr14	36988467	36988467	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagcggagccccgaggccGccgccctccatgcccacttt	11	20	0	0	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	NKX2-1	NM_001079668	exon2	c.C186A	p.G62G	GAGGCCGCCGCCC		138	4	0.03	79	2	0.0253164557		21		0	0					T	36988467	G	T	36988467	2	4	8	1	0	0	0	0	0	0	0	1	10495	1074	38	1		1	NKX2-1	14	36988467	Silent	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10		36988467	70361073	40	503											
OTX2	5015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	57271040	57271040	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacgtcgtcctctcccggcGctgtttccggggggtggctg	16	13	1	0	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_001270525	exon2	c.C139T	p.R47C	CCCGGCGCTGTTT		191	31	0.16	109	0	0				33	9	0.27				A	57271040	G	A	57271040	3	1	8	1	0	0	0	0	1	0	0	0	11367	1087	38	1	762	1	OTX2	14	57271040	Missense_Mutation	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10	20282573	57271040	50078500	41	504											
TDRD9	122402	mdanderson.org	37	chr14	104481101	104481101	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aattgaagactagaatctcaCagttcaacatgcatgttgat	7	7	2	4	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_153046	exon21	c.C2146T	p.Q716X	ATCTCACAGTTCA		66	3	0.05	60	0	0				4	0	0				T	104481101	C	T	104481101	4	4	8	1	0	0	0	0	0	1	0	0	15794	479	17	3	2228	3	TDRD9	14	104481101	Nonsense_Mutation	SNP	C	TCGA-2G-AAFH-01A-12D-A42Y-10	47210061	104481101	2868439	42	505											
UBN1	29855	ucsc.edu	37	chr16	4925276	4925276	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cccgtcccaagttcagcaggGaaaaaaatgcctgtttccca	8	13	1	0	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	UBN1	NM_001079514	exon15	c.G2865A	p.G955G	AGCAGGGAAAAAA		97	1	0.01	81	0	0		88		34	6	0.18				A	4925276	G	A	4925276	2	1	8	1	0	0	0	0	0	0	0	1	16952	1161	41	3		3	UBN1	16	4925276	Silent	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10		4925276	85429477	43	506											
C16orf62	57020	broad.mit.edu	37	chr16	19612991	19612991	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttttcctcccaggaaagCtcgtgtacgagcgcatcttt	8	13	1	0	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	C16orf62	NM_020314	exon9	c.C997A	p.L333I	GGAAAGCTCGTGT		110	7	0.06	111	1	0.009009009		164		33	0	0				A	19612991	C	A	19612991	3	1	8	1	0	0	0	0	1	0	0	0	1832	797	28	2	764	2	C16orf62	16	19612991	Missense_Mutation	SNP	C	TCGA-2G-AAFH-01A-12D-A42Y-10	14687715	19612991	70741762	44	507											
PKD1L2	114780	mdanderson.org	37	chr16	81213378	81213378	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctgagtctgcaggcatccAggaggggctcagcctgaaag	14	11	3	2	rs4889261	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_001076780	exon13	c.T2132A	p.L711Q	GCATCCAGGAGGG		87	2	0.02	95	0	0				0	0					T	81213378	A	T	81213378	3	4	8	1	0	0	0	0	1	0	0	0	12012	188	7	5	5440	5	PKD1L2	16	81213378	Missense_Mutation	SNP	A	TCGA-2G-AAFH-01A-12D-A42Y-10	61600387	81213378	9141375	45	508											
CMIP	80790	mdanderson.org	37	chr16	81737575	81737575	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctcgtttgctgagctccgGctccttcggaaacctggaga	13	12	0	2	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	CMIP,NS,carcinoma,+1,2	CMIP	NM_198390	exon18	c.G1976A	p.G659D	GCTCCGGCTCCTT		36	3	0.08	49	0	0		1	2	95	0	0				A	81737575	G	A	81737575	3	1	8	1	0	0	0	0	1	0	0	0	3601	1203	42	2	2068	2	CMIP	16	81737575	Missense_Mutation	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10	524197	81737575	8617178	46	509											
ZC3H18	124245	broad.mit.edu	37	chr16	88677720	88677721	+	In_Frame_Ins	INS	-	-	GAGCGG													agaacagacagcgcgagcgcINSgagcgggagcgggagcggga					novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	ZC3H18,colon,carcinoma,0,2	ZC3H18	NM_144604	exon8	c.1251_1252insGAGCGG	p.R417delinsRER	CGAGCGCGAGCGG		60	8	0.13	60	0	0		90	2	40	0	0				GAGCGG	88677721	-	GAGCGG	88677720	7	5	8	1	0	1	1	0	0	0	0	0	17626	755	27	0	1277	0	ZC3H18	16	88677720	In_Frame_Ins	INS	-	TCGA-2G-AAFH-01A-12D-A42Y-10	6940145	88677720	1677033	47	510											
UBB	7314	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr17	16285479	16285479	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcgtgaagaccctgaccggCaagaccatcaccctggaagt	10	13	1	4	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_018955	exon2	c.C258G	p.G86G	GACCGGCAAGACC		106	13	0.12	95	0	0				2236	330	0.15				G	16285479	C	G	16285479	2	3	8	1	0	0	0	0	0	0	0	1	16901	697	25	5		5	UBB	17	16285479	Silent	SNP	C	TCGA-2G-AAFH-01A-12D-A42Y-10		16285479	64909731	48	511											
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	29496939	29496939	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaactgtttgttcagaagaCaatgttgatgttcatgatat	8	4	2	4	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_001128147	exon5	c.C510T	p.D170D	AGAAGACAATGTT		96	13	0.14	93	0	0				4	2	0.5				T	29496939	C	T	29496939	2	4	8	1	0	0	0	0	0	0	0	1	10402	477	17	3		3	NF1	17	29496939	Silent	SNP	C	TCGA-2G-AAFH-01A-12D-A42Y-10	13211460	29496939	51698271	49	512											
C17orf98	388381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	36997456	36997456	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgatcagttttccgcaaaaGgggcggaaccacgtgactct	11	11	2	2	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_001080465	exon1	c.C187T	p.L63F	GCAAAAGGGGCGG		111	18	0.16	59	0	0				1	1	1				A	36997456	G	A	36997456	3	1	8	1	0	0	0	0	1	0	0	0	1904	1000	35	3	289	3	C17orf98	17	36997456	Missense_Mutation	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10	7500517	36997456	44197754	50	513											
CDC27	996	mdanderson.org	37	chr17	45234325	45234325	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tggtcctcctaataaacttcGaccagtttttggtttatttt	6	8	0	0	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_001114091	exon7	c.C796T	p.R266X	AACTTCGACCAGT		64	3	0.05	58	1	0.0172413793				42	0	0				A	45234325	G	A	45234325	4	1	8	1	0	0	0	0	0	1	0	0	3088	1066	37	1	1748	1	CDC27	17	45234325	Nonsense_Mutation	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10	8236869	45234325	35960885	51	514											
HOXB9	3219	mdanderson.org	37	chr17	46703562	46703562	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaggaaacttggctggagGcgcgtcctcactctcgtgac	13	11	2	2	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_024017	exon1	c.C70A	p.P24T	CTGGAGGCGCGTC		10	2	0.2	10	0	0				0	0					T	46703562	G	T	46703562	3	4	8	1	0	0	0	0	1	0	0	0	7348	1203	42	2	690	2	HOXB9	17	46703562	Missense_Mutation	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10	1469237	46703562	34491648	52	515											
GGA3	23163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	73237088	73237088	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ggacaaactgttggtcgtgtCcagctccgcaaggtcgatga	13	10	0	1	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_138619	exon11	c.G997T	p.D333Y	TCGTGTCCAGCTC		176	20	0.11	112	0	0				35	10	0.29				A	73237088	C	A	73237088	3	1	8	1	0	0	0	0	1	0	0	0	6395	855	30	3	1290	3	GGA3	17	73237088	Missense_Mutation	SNP	C	TCGA-2G-AAFH-01A-12D-A42Y-10	26533526	73237088	7958122	53	516											
ELP2	55250	mdanderson.org	37	chr18	33726314	33726314	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catgctttccacggagcgttGcacctttggaaacagaatac	9	11	0	1	rs143713231	byfrequency	TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_001242875	exon12	c.G1290A	p.L430L	AGCGTTGCACCTT		99	5	0.05	149	0	0	0.001			69	0	0				A	33726314	G	A	33726314	2	1	8	1	0	0	0	0	0	0	0	1	5108	1310	46	2		2	ELP2	18	33726314	Silent	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10		33726314	44350934	54	517											
PLIN5	440503	mdanderson.org	37	chr19	4531721	4531721	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacgcagttctcagccagGcggcaggcggagcccagcag	14	15	1	0	rs377467819	alternate_allele	TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_001013706	exon3	c.C174A	p.R58R	AGCCAGGCGGCAG		44	3	0.07	22	0	0				0	0					T	4531721	G	T	4531721	2	4	8	1	0	0	0	0	0	0	0	1	12140	1190	42	2		2	PLIN5	19	4531721	Silent	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10		4531721	54597262	55	518											
PNPLA6	10908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr19	7615464	7615464	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggctgcgtagcgtgatcCagcgaggcagtggcaagaag	18	9	0	2	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_001166111	exon18	c.C2035T	p.Q679X	GTGATCCAGCGAG		160	20	0.13	74	0	0				64	6	0.09				T	7615464	C	T	7615464	4	4	8	1	0	0	0	0	0	1	0	0	12216	595	21	3	2101	3	PNPLA6	19	7615464	Nonsense_Mutation	SNP	C	TCGA-2G-AAFH-01A-12D-A42Y-10	3083743	7615464	51513519	56	519											
ZNF699	374879	broad.mit.edu;ucsc.edu	37	chr19	9407511	9407511	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	attcacaggattttacttcaGtatttctcttgagtgaatca	6	7	4	2	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	ZNF699,NS,carcinoma,-1,1	ZNF699	NM_198535	exon5	c.C569G	p.T190S	ACTTCAGTATTTC		183	27	0.15	142	2	0.014084507		67	1	11	1	0.09				C	9407511	G	C	9407511	3	2	8	1	0	0	0	0	1	0	0	0	18156	1029	36	5	1363	5	ZNF699	19	9407511	Missense_Mutation	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10	1792047	9407511	49721472	57	520											
BST2	0	broad.mit.edu	37	chr19	17516586	17516587	+	RNA	INS	-	-	T													ttcccagaaaggaggtgggcINSttttttttcaccctgcttta					rs28413175	bycluster;by1000genomes	TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	BST2	.	.	.	.	GGTGGGCTTTTTT		8	5	0.63	4	0	0		28		0	0					T	17516587	-	T	17516586	6	5	8	0	1	1	1	0	0	0	0	0	1536	812	28	0		0	BST2	19	17516586	RNA	INS	-	TCGA-2G-AAFH-01A-12D-A42Y-10	8109075	17516586	41612397	58	521											
ZNF676	163223	bcgsc.ca	37	chr19	22363736	22363736	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agggttgagacgctactaaaTcctttgccacattcttcaca	7	11	2	1	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	ZNF676	NM_001001411	exon3	c.A783C	p.G261G	ACTAAATCCTTTG		71	3	0.04	55	0	0		146		81	0	0				G	22363736	T	G	22363736	2	3	8	1	0	0	0	0	0	0	0	1	18139	1422	50	4		4	ZNF676	19	22363736	Silent	SNP	T	TCGA-2G-AAFH-01A-12D-A42Y-10	4847150	22363736	36765247	59	522											
ZNF99	7652	hgsc.bcm.edu	37	chr19	22940462	22940463	+	Missense_Mutation	DNP	AC	AC	CT													cagtatgaattaccttatgtAcagtaagttttgaggaccac					novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	AC	AC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	ZNF99,colon,carcinoma,+2,1	ZNF99	NM_001080409	exon4	c.G2248A	p.V659R	TTATGTACAGTAA		54	4	0.07	34	1	0.0294117647		2	1	7	0	0				CT	22940463	AC	CT	22940462	3	2	8	1	0	0	0	0	1	0	0	0	18245	391	14	4	1148	4	ZNF99	19	22940462	Missense_Mutation	DNP	AC	TCGA-2G-AAFH-01A-12D-A42Y-10	576726	22940462	36188521	60	523											
ZNF567	163081	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	37211070	37211071	+	Frame_Shift_Del	DEL	TG	TG	-													aatcttatgaatgtcctcacTgtgggaaggcctttagaatg					novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	TG	TG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	ZNF567	NM_152603	exon4	c.1350_1351del	p.450_451del	CCTCACTGTGGGA		134	19	0.14	125	0	0		61		24	0	0				-	37211071	TG	-	37211070	7	5	8	1	0	1	0	1	0	0	0	0	18054	1580	55	0	1361	0	ZNF567	19	37211070	Frame_Shift_Del	DEL	TG	TCGA-2G-AAFH-01A-12D-A42Y-10	14270608	37211070	21917913	61	524											
RYR1	6261	mdanderson.org	37	chr19	38958286	38958286	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctcgttgtgaccgggtgcGcatcttccgggcagagaaat	14	10	2	2	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	RYR1,colon,carcinoma,0,3	RYR1	NM_001042723	exon25	c.G3215A	p.R1072H	GGGTGCGCATCTT		72	4	0.06	56	0	0		0	3	14	0	0				A	38958286	G	A	38958286	3	1	8	1	0	0	0	0	1	0	0	0	13819	1087	38	1	3313	1	RYR1	19	38958286	Missense_Mutation	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10	1747216	38958286	20170697	62	525											
ZNF528	84436	mdanderson.org	37	chr19	52919465	52919465	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagttttcagaccttactGcccattttctaatccatagt	6	10	2	2	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_032423	exon7	c.G1360T	p.A454S	CTTACTGCCCATT		123	5	0.04	104	0	0				35	0	0				T	52919465	G	T	52919465	3	4	8	1	0	0	0	0	1	0	0	0	18025	1319	46	2	1374	2	ZNF528	19	52919465	Missense_Mutation	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10	13961179	52919465	6209518	63	526											
KCNS1	3787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	43726455	43726455	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtgccacaccagccagcaGcgtgagatagaagggcagca	13	12	0	2	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_002251	exon4	c.C958T	p.L320L	CCAGCAGCGTGAG		62	16	0.26	39	0	0				5	2	0.4				A	43726455	G	A	43726455	2	1	8	1	0	0	0	0	0	0	0	1	8131	962	34	2		2	KCNS1	20	43726455	Silent	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10		43726455	19299065	64	527											
BAGE2	85319	broad.mit.edu	37	chr21	11045626	11045626	+	RNA	DEL	G	G	-													cacaaaagaatccaaaataaGatgtgaaaagataaccattc					rs56675609	bycluster;alternate_allele	TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	.	.	.	.	AAATAAGATGTGA		6	4	0.67	4	0	0				0	0					-	11045626	G	-	11045626	6	5	8	0	1	1	0	1	0	0	0	0	1290	957	33	0		0	BAGE2	21	11045626	RNA	DEL	G	TCGA-2G-AAFH-01A-12D-A42Y-10		11045626	37084269	65	528											
MORC3	23515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	37705948	37705948	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttgtttgtttcagctttGcccgaagtttttacatacaa	6	8	1	0	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_015358	exon2	c.G44T	p.C15F	AGCTTTGCCCGAA		155	20	0.13	103	0	0				16	3	0.19				T	37705948	G	T	37705948	3	4	8	1	0	0	0	0	1	0	0	0	9751	1319	46	2	50	2	MORC3	21	37705948	Missense_Mutation	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10	26660322	37705948	10423947	66	529											
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr21	46909431	46909431	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtgcctgggctgccgggggCgaaggtaagcgctgtgcccg	19	12	0	0	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_030582	exon18	c.C2495T	p.A832V	CGGGGGCGAAGGT		126	14	0.11	56	0	0				115	5	0.04				T	46909431	C	T	46909431	3	4	8	1	0	0	0	0	1	0	0	0	3698	768	27	1	3384	1	COL18A1	21	46909431	Missense_Mutation	SNP	C	TCGA-2G-AAFH-01A-12D-A42Y-10	9203483	46909431	1220464	67	530											
CARD10	29775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	37912055	37912055	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtgccaggcgcatggcgatCatgtagttctcatccttgag	12	10	2	1	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_014550	exon3	c.G624T	p.M208I	GGCGATCATGTAG		224	31	0.14	117	0	0				75	18	0.24				A	37912055	C	A	37912055	3	1	8	1	0	0	0	0	1	0	0	0	2662	826	29	3	2546	3	CARD10	22	37912055	Missense_Mutation	SNP	C	TCGA-2G-AAFH-01A-12D-A42Y-10		37912055	13392511	68	531											
CELSR1	9620	broad.mit.edu	37	chr22	46765084	46765084	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agccccacttacacgatcccTtttttcccataataatggtg	5	13	0	0	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	CELSR1	NM_014246	exon27	c.A7944G	p.K2648K	GATCCCTTTTTTC		220	4	0.02	150	0	0		242		16	0	0				C	46765084	T	C	46765084	2	2	8	1	0	0	0	0	0	0	0	1	3243	1606	56	4		4	CELSR1	22	46765084	Silent	SNP	T	TCGA-2G-AAFH-01A-12D-A42Y-10	8853029	46765084	4539482	69	532											
TUBGCP6	85378	mdanderson.org	37	chr22	50657310	50657310	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttgagcagctctccgggcGtttgcccagctccaagctag	13	13	1	1	rs144740402	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	TUBGCP6,NS,carcinoma,+1,1	TUBGCP6	NM_020461	exon21	c.C4643A	p.T1548K	CCGGGCGTTTGCC		59	3	0.05	39	0	0		1	1	48	0	0				T	50657310	G	T	50657310	3	4	8	1	0	0	0	0	1	0	0	0	16831	1145	40	1	836	1	TUBGCP6	22	50657310	Missense_Mutation	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10	3892226	50657310	647256	70	533											
FRMPD4	9758	mdanderson.org	37	chrX	12734431	12734431	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcccggggaggccccctGtgaggcagactacagaagtc	14	14	0	3	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_014728	exon15	c.G1853T	p.C618F	CCCCCTGTGAGGC		57	3	0.05	38	0	0				1	0	0				T	12734431	G	T	12734431	3	4	8	1	0	0	0	0	1	0	0	0	6093	1377	48	3	1911	3	FRMPD4	23	12734431	Missense_Mutation	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10		12734431	142536129	71	534											
RGN	9104	mdanderson.org	37	chrX	46951545	46951545	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aattactctgaaatgtatgtGacctgcgcccgggatgggat	12	8	1	2	novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_004683	exon6	c.G780T	p.V260V	GTATGTGACCTGC		126	5	0.04	93	0	0				0	0					T	46951545	G	T	46951545	2	4	8	1	0	0	0	0	0	0	0	1	13333	1277	45	3		3	RGN	23	46951545	Silent	SNP	G	TCGA-2G-AAFH-01A-12D-A42Y-10	34217114	46951545	108319015	72	535											
AR	367	hgsc.bcm.edu	37	chrX	66765222	66765223	+	Missense_Mutation	DNP	GC	GC	AG													cagcagcagcagcagcagcaGcagcaagagactagccccag					novel		TCGA-2G-AAFH-01A-12D-A42Y-10	TCGA-2G-AAFH-10A-01D-A433-10	GC	GC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	258cf1c4-41c5-4e54-ad57-0961483d99ba	bb501e72-c643-4afb-b1e8-56593b08cb2f	.	.	NM_000044	exon1	c.C235G	p.Q79E	GCAGCAGCAGCAA		145	8	0.06	107	0	0				0	0					AG	66765223	GC	AG	66765222	3	1	8	1	0	0	0	0	1	0	0	0	833	962	34	2	236	2	AR	23	66765222	Missense_Mutation	DNP	GC	TCGA-2G-AAFH-01A-12D-A42Y-10	19813677	66765222	88505338	73	536											
WASF2	10163	broad.mit.edu	37	chr1	27736343	27736343	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccggaggaggaggaggaggGggaggaggaggtgctcctcc	22	8	0	0	rs200541363		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	WASF2	NM_006990	exon8	c.C1182T	p.P394P	AGGAGGGGGAGGA		230	4	0.02	181	1	0.0055248619		41		48	0	0				A	27736343	G	A	27736343	2	1	9	1	0	0	0	0	0	0	0	1	17312	1219	43	3		3	WASF2	1	27736343	Silent	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10		27736343	221514278	1	537											
CACHD1	57685	broad.mit.edu	37	chr1	65147783	65147783	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcgatcaggaacagaaagtGatcatggtaaggtctagctt	12	6	3	2	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	CACHD1	NM_020925	exon26	c.G3427T	p.D1143Y	GAAAGTGATCATG		282	4	0.01	225	0	0		125		81	0	0				T	65147783	G	T	65147783	3	4	9	1	0	0	0	0	1	0	0	0	2555	1290	45	3	3529	3	CACHD1	1	65147783	Missense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10	37411440	65147783	184102838	2	538											
CACNA1E	777	mdanderson.org	37	chr1	181767679	181767679	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaactctccgcacccccaGcagagccaacatgcctcccc	5	22	1	1	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_001205293	exon48	c.G6651T	p.Q2217H	CCCCCAGCAGAGC		56	3	0.05	48	0	0				1	0	0				T	181767679	G	T	181767679	3	4	9	1	0	0	0	0	1	0	0	0	2560	962	34	2	6708	2	CACNA1E	1	181767679	Missense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10	116619896	181767679	67482942	3	539											
ZNF496	84838	mdanderson.org	37	chr1	247464565	247464565	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggctgttctctagagatcgCgggttgccgccagctacagg	14	11	1	1	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_032752	exon9	c.G1020A	p.P340P	AGATCGCGGGTTG		51	3	0.06	28	0	0				96	0	0				T	247464565	C	T	247464565	2	4	9	1	0	0	0	0	0	0	0	1	18001	755	27	1		1	ZNF496	1	247464565	Silent	SNP	C	TCGA-2G-AAFI-01A-21D-A42Y-10	65696886	247464565	1786056	4	540											
HIBCH	26275	ucsc.edu	37	chr2	191161637	191161637	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tcccgtgcaaccttttttttCcaatagcacctcttctgctg	5	14	2	0	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	HIBCH	NM_014362	exon3	c.G121A	p.E41K	TTTTTTCCAATAG		173	1	0.01	174	1	0.0057471264		28		40	5	0.13				T	191161637	C	T	191161637	3	4	9	1	0	0	0	0	1	0	0	0	7140	864	30	3	1087	3	HIBCH	2	191161637	Missense_Mutation	SNP	C	TCGA-2G-AAFI-01A-21D-A42Y-10		191161637	52037736	5	541											
BRPF1	7862	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr3	9783003	9783003	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctacagagagattctgaGgataagaactgggcccttaa	10	9	2	4	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_001003694	exon5	c.G1734T	p.E578D	TTCTGAGGATAAG		73	4	0.05	67	0	0				29	0	0				T	9783003	G	T	9783003	3	4	9	1	0	0	0	0	1	0	0	0	1522	991	35	3	1748	3	BRPF1	3	9783003	Missense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10		9783003	188239427	6	542											
FGD5	152273	broad.mit.edu	37	chr3	14941958	14941958	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgccgagtacgacaacacacAgggtgagtccagcgtgaatg	13	11	0	2	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	FGD5	NM_152536	exon8	c.A3203G	p.Q1068R	ACACACAGGGTGA		286	7	0.02	255	0	0		248		3	0	0				G	14941958	A	G	14941958	3	3	9	1	0	0	0	0	1	0	0	0	5868	188	7	4	3233	4	FGD5	3	14941958	Missense_Mutation	SNP	A	TCGA-2G-AAFI-01A-21D-A42Y-10	5158955	14941958	183080472	7	543											
CACNA1D	776	broad.mit.edu	37	chr3	53839099	53839099	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatccccaaggattcttggAggacgatgactcgcccgttt	10	12	2	1	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	CACNA1D	NM_000720	exon46	c.A5735G	p.E1912G	TCTTGGAGGACGA		89	3	0.03	64	1	0.015625		324		0	0					G	53839099	A	G	53839099	3	3	9	1	0	0	0	0	1	0	0	0	2559	304	11	4	6025	4	CACNA1D	3	53839099	Missense_Mutation	SNP	A	TCGA-2G-AAFI-01A-21D-A42Y-10	38897141	53839099	144183331	8	544											
PRICKLE2	166336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	64133021	64133021	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaggctgggtgtctggctgGacaggctgagcatgtccatc	16	9	1	2	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	PRICKLE2,colon,carcinoma,-1,1	PRICKLE2	NM_198859	exon7	c.C1145T	p.S382F	TGGCTGGACAGGC		78	35	0.45	80	0	0		-1	1	2	0	0				A	64133021	G	A	64133021	3	1	9	1	0	0	0	0	1	0	0	0	12538	1174	41	3	1397	3	PRICKLE2	3	64133021	Missense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10	10293922	64133021	133889409	9	545											
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	108189650	108189650	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gccactagccacttaaacatCctttcatacattgacttgga	5	12	1	1	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_014981	exon14	c.G1338C	p.R446S	AAACATCCTTTCA		170	24	0.14	140	0	0				0	0					G	108189650	C	G	108189650	3	3	9	1	0	0	0	0	1	0	0	0	10081	854	30	5	4618	5	MYH15	3	108189650	Missense_Mutation	SNP	C	TCGA-2G-AAFI-01A-21D-A42Y-10	44056629	108189650	89832780	10	546											
MED12L	116931	broad.mit.edu	37	chr3	150881773	150881773	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcacccctggatctgctgCaggtggccccgtccagcctc	11	18	2	0	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	MED12L	NM_053002	exon8	c.C1201T	p.Q401X	CTGCTGCAGGTGG		181	4	0.02	130	0	0		271		7	0	0				T	150881773	C	T	150881773	4	4	9	1	0	0	0	0	0	1	0	0	9478	711	25	2	1231	2	MED12L	3	150881773	Nonsense_Mutation	SNP	C	TCGA-2G-AAFI-01A-21D-A42Y-10	42692123	150881773	47140657	11	547											
FGF12	2257	mdanderson.org	37	chr3	192125818	192125818	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgggcttctactgacctggTctccgcctcaccggcctctt	9	18	4	1	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_021032	exon1	c.A195G	p.R65R	ACCTGGTCTCCGC		43	3	0.07	48	0	0				1	0	0				C	192125818	T	C	192125818	2	2	9	1	0	0	0	0	0	0	0	1	5873	1664	58	4		4	FGF12	3	192125818	Silent	SNP	T	TCGA-2G-AAFI-01A-21D-A42Y-10	41244045	192125818	5896612	12	548											
GAK	2580	mdanderson.org	37	chr4	877844	877844	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcaattctggatgtgatGtaagatatgtccaggtcacc	10	9	2	2	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_005255	exon12	c.C1236A	p.Y412X	TGTGATGTAAGAT		86	4	0.05	70	0	0				64	0	0				T	877844	G	T	877844	4	4	9	1	0	0	0	0	0	1	0	0	6234	1372	48	3	2767	3	GAK	4	877844	Nonsense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10		877844	190276432	13	549											
WHSC1	7468	mdanderson.org	37	chr4	1978397	1978397	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgcctgggccttggcaagCggcccttcggtgggtgtgca	16	13	0	0	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_133335	exon21	c.C3817T	p.R1273W	GGCAAGCGGCCCT		51	3	0.06	60	0	0				40	0	0				T	1978397	C	T	1978397	3	4	9	1	0	0	0	0	1	0	0	0	17421	759	27	1	3971	1	WHSC1	4	1978397	Missense_Mutation	SNP	C	TCGA-2G-AAFI-01A-21D-A42Y-10	1100553	1978397	189175879	14	550											
HTT	3064	broad.mit.edu	37	chr4	3076604	3076606	+	In_Frame_Del	DEL	CAG	CAG	-													tcgagtccctcaagtccttcCagcagcagcagcagcagcag					rs10618869	alternate_allele	TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	CAG	CAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	HTT	NM_002111	exon1	c.52_54del	p.18_18del	TCCTTCCAGCAGC		8	3	0.38	6	0	0		221		4	0	0				-	3076606	CAG	-	3076604	7	5	9	1	0	1	0	1	0	0	0	0	7500	595	21	0	54	0	HTT	4	3076604	In_Frame_Del	DEL	CAG	TCGA-2G-AAFI-01A-21D-A42Y-10	1098207	3076604	188077672	15	551											
TRIO	7204	mdanderson.org	37	chr5	14507271	14507271	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggactgcgtggtgcgatggGgaagcctcactgaagggaag	18	7	1	1	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_007118	exon56	c.G8653T	p.G2885X	CGATGGGGAAGCC		37	3	0.08	40	0	0				24	0	0				T	14507271	G	T	14507271	4	4	9	1	0	0	0	0	0	1	0	0	16612	1233	43	3	8875	3	TRIO	5	14507271	Nonsense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10		14507271	166407989	16	552											
MEGF10	84466	broad.mit.edu	37	chr5	126758405	126758405	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgagcgctgcgactgcaGccacgcagatggctgccacc	13	15	0	2	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	MEGF10	NM_032446	exon14	c.G1634T	p.S545I	ACTGCAGCCACGC		140	7	0.05	147	2	0.0136054422		152		2	0	0				T	126758405	G	T	126758405	3	4	9	1	0	0	0	0	1	0	0	0	9509	971	34	2	1680	2	MEGF10	5	126758405	Missense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10	112251134	126758405	54156855	17	553											
HIST1H4A	8359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	26021940	26021940	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaagggcgggaagggtttgGgtaaggggggtgccaagcgc	22	5	0	0	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_003538	exon1	c.G34A	p.G12S	GGTTTGGGTAAGG		131	13	0.1	132	0	0				0	0					A	26021940	G	A	26021940	3	1	9	1	0	0	0	0	1	0	0	0	7205	1232	43	3	36	3	HIST1H4A	6	26021940	Missense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10		26021940	145093127	18	554											
MUC21	394263	broad.mit.edu	37	chr6	30954813	30954813	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggatcagcacagtcaccaaTtctgagtccagcacaccctc	8	15	3	1	rs9262371	bycluster;by1000genomes	TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	MUC21	NM_001010909	exon2	c.T861C	p.N287N	CACCAATTCTGAG		66	4	0.06	82	1	0.012195122		98		0	0					C	30954813	T	C	30954813	2	2	9	1	0	0	0	0	0	0	0	1	10024	1490	52	4		4	MUC21	6	30954813	Silent	SNP	T	TCGA-2G-AAFI-01A-21D-A42Y-10	4932873	30954813	140160254	19	555											
ANKRD6	22881	broad.mit.edu	37	chr6	90276712	90276712	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	attcatgagccagcaagatgCggtcgctgcactttcagagc	11	11	2	3	rs200814043	by1000genomes;alternate_allele	TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	ANKRD6	NM_001242809	exon2	c.C17T	p.A6V	AAGATGCGGTCGC		273	6	0.02	223	2	0.0089686099		51		4	0	0				T	90276712	C	T	90276712	3	4	9	1	0	0	0	0	1	0	0	0	679	768	27	1	19	1	ANKRD6	6	90276712	Missense_Mutation	SNP	C	TCGA-2G-AAFI-01A-21D-A42Y-10	59321899	90276712	80838355	20	556											
TTLL2	83887	mdanderson.org	37	chr6	167754661	167754661	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atggtctaagaaatgaggggAgagaagccagtaatgccaca	13	6	1	3	rs909545	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_031949	exon3	c.A1273T	p.R425X	GAGGGGAGAGAAG		105	3	0.03	98	0	0				0	0					T	167754661	A	T	167754661	4	4	9	1	0	0	0	0	0	1	0	0	16788	296	11	5	1283	5	TTLL2	6	167754661	Nonsense_Mutation	SNP	A	TCGA-2G-AAFI-01A-21D-A42Y-10	77477949	167754661	3360406	21	557											
SDK1	221935	broad.mit.edu	37	chr7	3681699	3681699	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagacctcaagtgacttgGtttagagaagggcacaagat	11	9	1	4	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	SDK1,bladder,carcinoma,+1,1	SDK1	NM_152744	exon4	c.G675T	p.W225C	GACTTGGTTTAGA		130	5	0.04	118	0	0		361	1	3	0	0				T	3681699	G	T	3681699	3	4	9	1	0	0	0	0	1	0	0	0	14021	1270	44	3	689	3	SDK1	7	3681699	Missense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10		3681699	155456964	22	558											
SP8	221833	broad.mit.edu;mdanderson.org	37	chr7	20824970	20824970	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgcccccgccgccgccgcCgctgcccccggaaactccgg	12	24	0	0	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	SP8	NM_182700	exon2	c.G466A	p.G156S	CGCCGCCGCTGCC		59	4	0.07	46	0	0		43		2	0	0				T	20824970	C	T	20824970	3	4	9	1	0	0	0	0	1	0	0	0	15023	652	23	1	1064	1	SP8	7	20824970	Missense_Mutation	SNP	C	TCGA-2G-AAFI-01A-21D-A42Y-10	17143271	20824970	138313693	23	559											
DNAH11	8701	mdanderson.org	37	chr7	21745108	21745108	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgaggaactgttggctgtgCggcactcggtctttgtagtt	14	7	1	1	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	DNAH11,NS,carcinoma,-1,1	DNAH11	.	.	.	.	GCTGTGCGGCACT		130	5	0.04	138	0	0		-1	1	0	0					T	21745108	C	T	21745108	3	4	9	1	0	0	0	0	1	0	0	0	4627	759	27	1	6675	1	DNAH11	7	21745108	Missense_Mutation	SNP	C	TCGA-2G-AAFI-01A-21D-A42Y-10	920138	21745108	137393555	24	560											
DNAH11	8701	mdanderson.org	37	chr7	21924014	21924014	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtgtatttagaagaattcAtgaatccatctctggtaaga	10	5	2	4	rs6461613	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	.	.	.	.	GAATTCATGAATC		95	2	0.02	114	0	0				0	0					T	21924014	A	T	21924014	3	4	9	1	0	0	0	0	1	0	0	0	4627	217	8	5	12817	5	DNAH11	7	21924014	Missense_Mutation	SNP	A	TCGA-2G-AAFI-01A-21D-A42Y-10	178906	21924014	137214649	25	561											
BBS9	27241	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	33407379	33407380	+	Frame_Shift_Ins	INS	-	-	T													ttctctcttttctttgtaggINSttttgccagtcagtcagatg					novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	BBS9	NM_198428	exon17	c.1694_1695insT	p.G565fs	TTGTAGGTTTTGC		116	39	0.34	133	0	0		194		20	0	0				T	33407380	-	T	33407379	7	5	9	1	0	1	1	0	0	0	0	0	1340	1275	44	0	1756	0	BBS9	7	33407379	Frame_Shift_Ins	INS	-	TCGA-2G-AAFI-01A-21D-A42Y-10	11483365	33407379	125731284	26	562											
PON1	5444	broad.mit.edu	37	chr7	94944672	94944672	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	taatcccatgagggttaaatGaagatacatcaaatttactt	6	6	1	3	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	PON1,NS,carcinoma,0,1	PON1	NM_000446	exon4	c.C332A	p.S111X	TTAAATGAAGATA		272	5	0.02	180	1	0.0055555556		55	1	0	0					T	94944672	G	T	94944672	4	4	9	1	0	0	0	0	0	1	0	0	12295	1294	45	3	759	3	PON1	7	94944672	Nonsense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10	61537293	94944672	64193991	27	563											
ZAN	7455	broad.mit.edu	37	chr7	100349865	100349865	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacagaaaaacccaccatcTccccagaaaaacccaccatc	2	19	1	2	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	ZAN	.	.	.	.	ACCATCTCCCCAG		221	15	0.07	111	5	0.045045045		658		3	0	0				C	100349865	T	C	100349865	1	2	9	0	1	0	0	0	0	0	0	0	17572	1551	54	4		4	ZAN	7	100349865	RNA	SNP	T	TCGA-2G-AAFI-01A-21D-A42Y-10	5405193	100349865	58788798	28	564											
MUC17	140453	broad.mit.edu	37	chr7	100686191	100686191	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgatgagtccttctgagGccagcacactttcaacacct	8	13	2	3	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	MUC17	NM_001040105	exon3	c.G11494T	p.A3832S	TCTGAGGCCAGCA		152	4	0.03	82	0	0		804		0	0					T	100686191	G	T	100686191	3	4	9	1	0	0	0	0	1	0	0	0	10021	1203	42	2	11504	2	MUC17	7	100686191	Missense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10	336326	100686191	58452472	29	565											
TRIM24	8805	broad.mit.edu	37	chr7	138239517	138239517	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcgtggaacagaattcaCagccaccaagtggtttatca	9	10	2	1	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	TRIM24	NM_003852	exon9	c.C1336T	p.Q446X	AATTCACAGCCAC		641	5	0.01	384	1	0.0026041667		131		88	0	0				T	138239517	C	T	138239517	4	4	9	1	0	0	0	0	0	1	0	0	16558	479	17	3	1370	3	TRIM24	7	138239517	Nonsense_Mutation	SNP	C	TCGA-2G-AAFI-01A-21D-A42Y-10	37553326	138239517	20899146	30	566											
YWHAZ	7534	mdanderson.org	37	chr8	101960892	101960892	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtattctcgagccatctgctGttttttctcagcaccttccg	7	13	3	0	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_001135699	exon2	c.C226A	p.Q76K	TCTGCTGTTTTTT		52	3	0.06	40	1	0.025				2114	3	0				T	101960892	G	T	101960892	3	4	9	1	0	0	0	0	1	0	0	0	17565	1386	48	3	531	3	YWHAZ	8	101960892	Missense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10		101960892	44403130	31	567											
PRSS3	5646	mdanderson.org	37	chr9	33794809	33794809	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgcacatgagagagacaaGtggcttcacattgaagaagg	13	6	1	4	rs201061108		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_001197097	exon2	c.G20A	p.S7N	AGACAAGTGGCTT		90	15	0.17	60	2	0.0333333333				0	0					A	33794809	G	A	33794809	3	1	9	1	0	0	0	0	1	0	0	0	12670	1044	36	3		3	PRSS3	9	33794809	Missense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10		33794809	107418622	32	568											
RGS3	5998	broad.mit.edu	37	chr9	116303614	116303614	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ccacagaaactccaccctttCggctctctccagcaggagat	7	16	1	2	rs201201135	by1000genomes;alternate_allele	TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	RGS3	NM_017790	exon18	c.C1716G	p.F572L	CCCTTTCGGCTCT		90	4	0.04	88	0	0		251		0	0					G	116303614	C	G	116303614	3	3	9	1	0	0	0	0	1	0	0	0	13355	883	31	5	2271	5	RGS3	9	116303614	Missense_Mutation	SNP	C	TCGA-2G-AAFI-01A-21D-A42Y-10	82508805	116303614	24909817	33	569											
RTKN2	219790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	63957724	63957724	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtctttgatggatttctgCcttggagctggcactggctt	12	8	2	1	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_145307	exon12	c.G1773A	p.R591R	TTTCTGCCTTGGA		165	67	0.41	154	0	0				5	3	0.6				T	63957724	C	T	63957724	2	4	9	1	0	0	0	0	0	0	0	1	13774	738	26	2		2	RTKN2	10	63957724	Silent	SNP	C	TCGA-2G-AAFI-01A-21D-A42Y-10		63957724	71577023	34	570											
MYPN	84665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	69881408	69881408	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctttctgagccaagaagaAttagacgaaagtgtcaattt	9	7	2	4	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	MYPN,NS,carcinoma,+2,1	MYPN	NM_032578	exon2	c.A213G	p.E71E	AGAAGAATTAGAC		149	8	0.05	179	0	0		2	1	0	0					G	69881408	A	G	69881408	2	3	9	1	0	0	0	0	0	0	0	1	10145	98	4	4		4	MYPN	10	69881408	Silent	SNP	A	TCGA-2G-AAFI-01A-21D-A42Y-10	5923684	69881408	65653339	35	571											
LRRC20	55222	mdanderson.org	37	chr10	72061201	72061201	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcgcacctcggcgttgagtGggttgaagcggaggttgatg	18	8	0	3	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_207119	exon5	c.C464A	p.P155Q	TTGAGTGGGTTGA		61	3	0.05	66	0	0				5	0	0				T	72061201	G	T	72061201	3	4	9	1	0	0	0	0	1	0	0	0	9021	1348	47	3	94	3	LRRC20	10	72061201	Missense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10	2179793	72061201	63473546	36	572											
ZNF503	84858	mdanderson.org	37	chr10	77159117	77159117	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaagcgctggcggccgccGcccctgccaggtggctagcg	16	15	0	1	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_032772	exon2	c.C1331A	p.A444E	GCCGCCGCCCCTG		14	2	0.14	26	0	0				6	0	0				T	77159117	G	T	77159117	3	4	9	1	0	0	0	0	1	0	0	0	18007	1087	38	1	613	1	ZNF503	10	77159117	Missense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10	5097916	77159117	58375630	37	573											
CNNM1	26507	mdanderson.org	37	chr10	101089397	101089397	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaccgccggccaccgccGcaccggtgccctcaccgacc	11	22	1	0	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_020348	exon1	c.G253T	p.A85S	ACCGCCGCACCGG		13	3	0.23	14	0	0				0	0					T	101089397	G	T	101089397	3	4	9	1	0	0	0	0	1	0	0	0	3635	1087	38	1	255	1	CNNM1	10	101089397	Missense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10	23930280	101089397	34445350	38	574											
KNDC1	85442	mdanderson.org	37	chr10	135012338	135012338	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agccagagggggcctcatcgGcagctcccggctctccagtc	13	16	2	1	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_152643	exon14	c.G2326T	p.A776S	TCATCGGCAGCTC		12	2	0.17	18	0	0				4	0	0				T	135012338	G	T	135012338	3	4	9	1	0	0	0	0	1	0	0	0	8468	1203	42	2	2380	2	KNDC1	10	135012338	Missense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10	33922941	135012338	522409	39	575											
MUC2	4583	mdanderson.org	37	chr11	1092960	1092960	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accaccaccactacggtgacCccaaccccaacacccaccgg	5	22	0	1	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_002457	exon30	c.C4779A	p.T1593T	GGTGACCCCAACC		21	4	0.19	26	1	0.0384615385				0	0					A	1092960	C	A	1092960	2	1	9	1	0	0	0	0	0	0	0	1	10022	610	22	3		3	MUC2	11	1092960	Silent	SNP	C	TCGA-2G-AAFI-01A-21D-A42Y-10		1092960	133913556	40	576											
TUBA1A	7846	broad.mit.edu	37	chr12	49580272	49580274	+	In_Frame_Del	DEL	GGA	GGA	-													tgatgggggaggagcaggggGgaggaggaggagggacgagg					novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	GGA	GGA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	TUBA1A	.	.	.	.	CAGGGGGGAGGAG		160	8	0.05	87	0	0		32		10	0	0				-	49580274	GGA	-	49580272	7	5	9	1	0	1	0	1	0	0	0	0	16804	1247	43	0		0	TUBA1A	12	49580272	In_Frame_Del	DEL	GGA	TCGA-2G-AAFI-01A-21D-A42Y-10		49580272	84271623	41	577											
TENC1	23371	mdanderson.org	37	chr12	53442956	53442956	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtggagtatgtgttgggaGgggggacctcctgtccagtc	19	7	0	0	rs12369033	bycluster;byfrequency;by2hit2allele;by1000genomes;alternate_allele	TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_015319	exon1	c.G29T	p.R10M	TTGGGAGGGGGGA		109	3	0.03	49	0	0				0	0					T	53442956	G	T	53442956	3	4	9	1	0	0	0	0	1	0	0	0	15816	1000	35	3	31	3	TENC1	12	53442956	Missense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10	3862684	53442956	80408939	42	578											
KBTBD7	84078	mdanderson.org	37	chr13	41767097	41767097	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aatgtagatgtagccattgaGatatgccacatccatgccct	8	10	0	2	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_032138	exon1	c.C1297A	p.L433I	CATTGAGATATGC		140	6	0.04	153	1	0.0065359477				19	0	0				T	41767097	G	T	41767097	3	4	9	1	0	0	0	0	1	0	0	0	8041	942	33	3	761	3	KBTBD7	13	41767097	Missense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10		41767097	73402781	43	579											
CRAMP1L	57585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	1703072	1703072	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accagaagccagtgcgcctgCctctgaaagtccctatagag	10	13	1	3	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_020825	exon7	c.C952A	p.P318T	CGCCTGCCTCTGA		100	14	0.14	83	0	0				6	0	0				A	1703072	C	A	1703072	3	1	9	1	0	0	0	0	1	0	0	0	3869	739	26	2	978	2	CRAMP1L	16	1703072	Missense_Mutation	SNP	C	TCGA-2G-AAFI-01A-21D-A42Y-10		1703072	88651681	44	580											
ITGAL	3683	mdanderson.org	37	chr16	30510736	30510736	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgggggttgttcccaggaGggagacatgaactcagaagg	17	7	1	3	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_002209	exon17	c.G2071T	p.G691W	CCAGGAGGGAGAC		52	3	0.06	74	0	0				11	0	0				T	30510736	G	T	30510736	3	4	9	1	0	0	0	0	1	0	0	0	7929	1000	35	3	2137	3	ITGAL	16	30510736	Missense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10	28807664	30510736	59844017	45	581											
HEATR3	55027	mdanderson.org	37	chr16	50112705	50112705	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaagagtcaagcagaaatcAtaaatgccttactaaagatc	7	8	2	3	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_182922	exon7	c.A817T	p.I273L	GAAATCATAAATG		57	3	0.05	84	0	0				41	1	0.02				T	50112705	A	T	50112705	3	4	9	1	0	0	0	0	1	0	0	0	7069	217	8	5	843	5	HEATR3	16	50112705	Missense_Mutation	SNP	A	TCGA-2G-AAFI-01A-21D-A42Y-10	19601969	50112705	40242048	46	582											
KRTAP1-1	81851	broad.mit.edu	37	chr17	39197304	39197304	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctgggcggcaccacctgaTacgggtgctcacagctccac	12	15	2	1	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	KRTAP1-1,NS,malignant_melanoma,0,1	KRTAP1-1	NM_030967	exon1	c.A346G	p.I116V	ACCTGATACGGGT		108	3	0.03	87	0	0		23	1	0	0					C	39197304	T	C	39197304	3	2	9	1	0	0	0	0	1	0	0	0	8544	1406	49	4	191	4	KRTAP1-1	17	39197304	Missense_Mutation	SNP	T	TCGA-2G-AAFI-01A-21D-A42Y-10		39197304	41997906	47	583											
KRTAP9-9	81870	hgsc.bcm.edu	37	chr17	39411694	39411694	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tgctgcaggaccacctgctgGaagcccaccactgtgaccac	10	16	0	1	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	KRTAP9-9,NS,carcinoma,+2,1	KRTAP9-9	NM_030975	exon1	c.G57C	p.W19C	CTGCTGGAAGCCC		110	8	0.07	68	1	0.0147058824		2	1	0	0					C	39411694	G	C	39411694	3	2	9	1	0	0	0	0	1	0	0	0	8615	1183	41	5	59	5	KRTAP9-9	17	39411694	Missense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10	214390	39411694	41783516	48	584											
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	60743604	60743604	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggactacggcaaagacgagCgctggggcttctgccccatc	13	13	1	1	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_006039	exon3	c.C670T	p.R224C	GACGAGCGCTGGG		58	10	0.17	53	0	0				49	16	0.33				T	60743604	C	T	60743604	3	4	9	1	0	0	0	0	1	0	0	0	9806	768	27	1	680	1	MRC2	17	60743604	Missense_Mutation	SNP	C	TCGA-2G-AAFI-01A-21D-A42Y-10	21331910	60743604	20451606	49	585											
KLHL14	57565	mdanderson.org	37	chr18	30350531	30350531	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctggggtcgaaggtggaGgtcctgtccccggatctgga	18	9	1	0	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_020805	exon2	c.C24A	p.T8T	GGTGGAGGTCCTG		15	2	0.13	18	0	0				0	0					T	30350531	G	T	30350531	2	4	9	1	0	0	0	0	0	0	0	1	8412	987	35	3		3	KLHL14	18	30350531	Silent	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10		30350531	47726717	50	586											
PRAM1	84106	mdanderson.org	37	chr19	8563401	8563401	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atggctgggtctgaggcctgGcctggcccctccactgtgaa	14	13	1	2	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_032152	exon2	c.C1291A	p.P431T	GGCCTGGCCTGGC		38	3	0.08	45	0	0				3	0	0				T	8563401	G	T	8563401	3	4	9	1	0	0	0	0	1	0	0	0	12471	1203	42	2	754	2	PRAM1	19	8563401	Missense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10		8563401	50565582	51	587											
UBE2M	9040	broad.mit.edu	37	chr19	59067587	59067587	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgttcagtgggtcctcggGgttgggctcctgtggccagt	16	10	1	0	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	UBE2M	NM_003969	exon6	c.C421A	p.P141T	CCTCGGGGTTGGG		187	5	0.03	153	0	0		14		580	0	0				T	59067587	G	T	59067587	3	4	9	1	0	0	0	0	1	0	0	0	16925	1232	43	3	134	3	UBE2M	19	59067587	Missense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10	50504186	59067587	61396	52	588											
ADNP	23394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr20	49509508	49509508	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggattattttgggcatgGtaagcaacagattcagctgg	14	5	1	1	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_015339	exon5	c.C1743A	p.Y581X	GGCATGGTAAGCA		171	54	0.32	108	0	0				154	54	0.35				T	49509508	G	T	49509508	4	4	9	1	0	0	0	0	0	1	0	0	322	1256	44	3	1569	3	ADNP	20	49509508	Nonsense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10		49509508	13516012	53	589											
ZNRF3	84133	mdanderson.org	37	chr22	29446468	29446468	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccttcaccccgaccatttgCccaggacagatggggtgaaa	11	13	1	2	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_001206998	exon8	c.C2299T	p.P767S	CATTTGCCCAGGA		51	3	0.06	53	0	0				39	0	0				T	29446468	C	T	29446468	3	4	9	1	0	0	0	0	1	0	0	0	18254	739	26	2	2025	2	ZNRF3	22	29446468	Missense_Mutation	SNP	C	TCGA-2G-AAFI-01A-21D-A42Y-10		29446468	21858098	54	590											
ODF3B	440836	broad.mit.edu;mdanderson.org	37	chr22	50969176	50969176	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ggccgcgggccctggcttccGagtgttgtcttgggggagcg	19	11	1	0	rs371794773	alternate_allele	TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	ODF3B	NM_001014440	exon6	c.C646A	p.R216R	GCTTCCGAGTGTT		92	4	0.04	85	0	0		6		39	0	0				T	50969176	G	T	50969176	4	4	9	1	0	0	0	0	0	1	0	0	10877	1057	37	1	123	1	ODF3B	22	50969176	Nonsense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10	21522708	50969176	335390	55	591											
IGSF1	3547	broad.mit.edu	37	chrX	130412689	130412689	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaggaaagttggtctctGcccacagctcaggcttaggg	13	11	2	1	novel		TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	IGSF1	NM_001170961	exon12	c.C1802A	p.A601E	GTCTCTGCCCACA		264	5	0.02	155	0	0		231		40	0	0				T	130412689	G	T	130412689	3	4	9	1	0	0	0	0	1	0	0	0	7639	1319	46	2	2259	2	IGSF1	23	130412689	Missense_Mutation	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10		130412689	24857871	56	592											
ARHGAP4	393	mdanderson.org	37	chrX	153174574	153174574	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgggaccaagcagcgtcGtctgtgtccagagggtccca	15	12	1	1	rs202239294	alternate_allele	TCGA-2G-AAFI-01A-21D-A42Y-10	TCGA-2G-AAFI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9480516-f59c-493a-af4e-826e35d4967f	78f10599-cf46-4998-be34-08693afd06f2	.	.	NM_001164741	exon22	c.C2677A	p.R893R	AGCGTCGTCTGTG		55	3	0.05	34	0	0				70	0	0				T	153174574	G	T	153174574	2	4	9	1	0	0	0	0	0	0	0	1	882	1153	40	1		1	ARHGAP4	23	153174574	Silent	SNP	G	TCGA-2G-AAFI-01A-21D-A42Y-10	22761885	153174574	2095986	57	593											
C1orf127	148345	broad.mit.edu	37	chr1	11014129	11014129	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaccggggcagccatctcgGcaaattccaggctcaggtct	13	13	3	0	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	C1orf127	NM_001170754	exon10	c.C1046T	p.A349V	ATCTCGGCAAATT		406	8	0.02	347	0	0		134		2	0	0				A	11014129	G	A	11014129	3	1	10	1	0	0	0	0	1	0	0	0	2007	1203	42	2	1437	2	C1orf127	1	11014129	Missense_Mutation	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10		11014129	238236492	1	594											
PRAMEF1	65121	broad.mit.edu	37	chr1	12856083	12856084	+	Frame_Shift_Ins	INS	-	-	C													gaggatcttcattggccccaINSccccctgcccttcctgtggc					novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	PRAMEF1	NM_023013	exon4	c.1363_1364insC	p.T455fs	GGCCCCACCCCCT		1405	0	0	1067	0	0		78		0	0					C	12856084	-	C	12856083	7	5	10	1	0	1	1	0	0	0	0	0	12473	159	6	0	1373	0	PRAMEF1	1	12856083	Frame_Shift_Ins	INS	-	TCGA-2G-AAFJ-01A-11D-A42Y-10	1841954	12856083	236394538	2	595											
ALDH4A1	8659	mdanderson.org	37	chr1	19216599	19216599	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgtgcttccaccgcagGctggaacacaagggcagggg	17	10	0	0	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_003748	exon2	c.C63A	p.G21G	CCGCAGGCTGGAA		60	5	0.08	28	0	0				17	0	0				T	19216599	G	T	19216599	2	4	10	1	0	0	0	0	0	0	0	1	498	1217	42	2		2	ALDH4A1	1	19216599	Silent	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10	6360516	19216599	230034022	3	596											
LDLRAD2	401944	broad.mit.edu	37	chr1	22141108	22141108	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgctcaacacctcctccccGgccccggccgacccgtgcgc	10	23	1	0	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	LDLRAD2	NM_001013693	exon2	c.G303C	p.P101P	CTCCCCGGCCCCG		200	17	0.09	171	10	0.0584795322		17		0	0					C	22141108	G	C	22141108	2	2	10	1	0	0	0	0	0	0	0	1	8744	1103	39	5		5	LDLRAD2	1	22141108	Silent	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10	2924509	22141108	227109513	4	597											
FAAH	2166	mdanderson.org	37	chr1	46874212	46874212	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccccggccatgaggcggGccgtgctggagaccaaacag	14	15	0	2	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	FAAH,NS,carcinoma,-1,2	FAAH	NM_001441	exon8	c.G1033T	p.A345S	AGGCGGGCCGTGC		115	5	0.04	134	0	0		-1	2	24	0	0				T	46874212	G	T	46874212	3	4	10	1	0	0	0	0	1	0	0	0	5384	1203	42	2	1063	2	FAAH	1	46874212	Missense_Mutation	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10	24733104	46874212	202376409	5	598											
RCSD1	92241	hgsc.bcm.edu	37	chr1	167653179	167653179	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaatgtggacaactcggcgTccccctcggtggcccagctg	12	16	0	0	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_052862	exon2	c.T49C	p.S17P	TCGGCGTCCCCCT		102	6	0.06	83	0	0				19	0	0				C	167653179	T	C	167653179	3	2	10	1	0	0	0	0	1	0	0	0	13236	1667	58	4	55	4	RCSD1	1	167653179	Missense_Mutation	SNP	T	TCGA-2G-AAFJ-01A-11D-A42Y-10	120778967	167653179	81597442	6	599											
KIF21B	23046	mdanderson.org	37	chr1	200974466	200974466	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtgcacatgcgcatctgGcacaggtggatggtgaagat	16	7	1	2	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_017596	exon5	c.C702A	p.C234X	CATCTGGCACAGG		35	3	0.09	23	0	0				3	0	0				T	200974466	G	T	200974466	4	4	10	1	0	0	0	0	0	1	0	0	8330	1195	42	2	4292	2	KIF21B	1	200974466	Nonsense_Mutation	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10	33321287	200974466	48276155	7	600											
OBSCN	84033	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	228557931	228557931	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cccagtgcctctcccaccccTggttcctggtgagtatcagg	10	16	2	1	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	OBSCN	NM_001271223	exon103	c.T23029A	p.W7677R	CACCCCTGGTTCC		190	7	0.04	181	0	0		2142		5	0	0				A	228557931	T	A	228557931	3	1	10	1	0	0	0	0	1	0	0	0	10859	1580	55	5	21730	5	OBSCN	1	228557931	Missense_Mutation	SNP	T	TCGA-2G-AAFJ-01A-11D-A42Y-10	27583465	228557931	20692690	8	601											
GNPAT	8443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	231403537	231403537	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgagcccctggaccctaatAgttgctgttctgcttcagaa	9	11	2	2	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_014236	exon9	c.A1167T	p.I389I	CCTAATAGTTGCT		138	35	0.25	149	0	0				135	42	0.31				T	231403537	A	T	231403537	2	4	10	1	0	0	0	0	0	0	0	1	6582	410	15	5		5	GNPAT	1	231403537	Silent	SNP	A	TCGA-2G-AAFJ-01A-11D-A42Y-10	2845606	231403537	17847084	9	602											
YWHAQ	10971	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	9725475	9725475	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcactgtctgatgtccaaagCtagaaaaagaagaatcatat	8	7	2	4	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	YWHAQ	NM_006826	exon7	c.679-1G>C	.	CCAAAGCTAGAAA		414	13	0.03	231	0	0		14		4	0	0				G	9725475	C	G	9725475	5	3	10	1	0	0	0	0	0	0	1	0	17564	811	28	5	63	5	YWHAQ	2	9725475	Splice_Site	SNP	C	TCGA-2G-AAFJ-01A-11D-A42Y-10		9725475	233473898	10	603											
NT5C1B	93034	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	18765887	18765887	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ccgctgctgctgctgctgctCggacagagagttgcggtcca	14	13	0	1	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	NT5C1B,NS,carcinoma,0,1	NT5C1B	NM_001199087	exon5	c.G847C	p.E283Q	GCTGCTCGGACAG		141	10	0.07	79	0	0		0	1	1	0	0				G	18765887	C	G	18765887	3	3	10	1	0	0	0	0	1	0	0	0	10733	893	31	5	1060	5	NT5C1B	2	18765887	Missense_Mutation	SNP	C	TCGA-2G-AAFJ-01A-11D-A42Y-10	9040412	18765887	224433486	11	604											
SOS1	6654	broad.mit.edu	37	chr2	39213243	39213243	+	Frame_Shift_Del	DEL	T	T	-													gaaggcattgccatggtcacTttttttgcccaaagggggag					novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	SOS1	NM_005633	exon23	c.3724delA	p.S1242fs	GGTCACTTTTTTT		589	9	0.02	259	0	0		134		185	0	0				-	39213243	T	-	39213243	7	5	10	1	0	1	0	1	0	0	0	0	14989	1609	56	0	281	0	SOS1	2	39213243	Frame_Shift_Del	DEL	T	TCGA-2G-AAFJ-01A-11D-A42Y-10	20447356	39213243	203986130	12	605											
SOS1	6654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	39224171	39224171	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cccatcggattcaagttttcAaagaacctctaaaataaatg	5	9	3	1	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_005633	exon19	c.T2973A	p.F991L	GTTTTCAAAGAAC		235	23	0.1	87	0	0				114	14	0.12				T	39224171	A	T	39224171	3	4	10	1	0	0	0	0	1	0	0	0	14989	127	5	5	1048	5	SOS1	2	39224171	Missense_Mutation	SNP	A	TCGA-2G-AAFJ-01A-11D-A42Y-10	10928	39224171	203975202	13	606											
CDK15	65061	broad.mit.edu	37	chr2	202688417	202688417	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggcccagtatatgtctcaGcatccaggagggcttcatcc	10	13	2	0	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	CDK15	NM_001261435	exon6	c.G573C	p.Q191H	GTCTCAGCATCCA		149	4	0.03	120	0	0		66		3	0	0				C	202688417	G	C	202688417	3	2	10	1	0	0	0	0	1	0	0	0	3153	962	34	5	438	5	CDK15	2	202688417	Missense_Mutation	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10	163464246	202688417	40510956	14	607											
SLC4A3	6508	broad.mit.edu	37	chr2	220503458	220503458	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctacagggctctcagtgaccTctcccgataagcgctcgtgg	11	14	2	1	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	SLC4A3	NM_201574	exon19	c.T2971C	p.S991P	GTGACCTCTCCCG		107	3	0.03	81	1	0.012345679		144		47	0	0				C	220503458	T	C	220503458	3	2	10	1	0	0	0	0	1	0	0	0	14709	1551	54	4	3041	4	SLC4A3	2	220503458	Missense_Mutation	SNP	T	TCGA-2G-AAFJ-01A-11D-A42Y-10	17815041	220503458	22695915	15	608											
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	4774832	4774832	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacgtcagaccttcgggaCgaagagagagccttaccagc	12	11	1	3	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	ITPR1_ENST00000357086,NS,carcinoma,0,3	ITPR1_ENST00000357086	NM_001168272	exon42	c.C5236A	p.R1746R	TCGGGACGAAGAG		127	7	0.06	109	0	0		0	3	20	0	0				A	4774832	C	A	4774832	2	1	10	1	0	0	0	0	0	0	0	1	7963	528	19	1		1	ITPR1	3	4774832	Silent	SNP	C	TCGA-2G-AAFJ-01A-11D-A42Y-10		4774832	193247598	16	609											
SPCS1	28972	mdanderson.org	37	chr3	52740155	52740155	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccgggcttagaaggcccgGctactgacgcgcagtgccag	14	14	0	2	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_014041	exon1	c.G94T	p.A32S	GGCCCGGCTACTG		53	3	0.06	32	0	0				290	0	0				T	52740155	G	T	52740155	3	4	10	1	0	0	0	0	1	0	0	0	15078	1203	42	2	96	2	SPCS1	3	52740155	Missense_Mutation	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10	47965323	52740155	145282275	17	610											
EBLN2	55096	hgsc.bcm.edu	37	chr3	73111480	73111480	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atttgagctatctgggaaaaAcagacagtatccactggatg	10	7	1	2	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_018029	exon1	c.A248C	p.N83T	GGAAAAACAGACA		225	9	0.04	158	0	0				4	0	0				C	73111480	A	C	73111480	3	2	10	1	0	0	0	0	1	0	0	0	4910	43	2	4	250	4	EBLN2	3	73111480	Missense_Mutation	SNP	A	TCGA-2G-AAFJ-01A-11D-A42Y-10	20371325	73111480	124910950	18	611											
SENP7	57337	broad.mit.edu	37	chr3	101066800	101066800	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ccagaagaaaagaatagcatGactccttttactgtgattat	7	7	0	5	rs201608850	by1000genomes;alternate_allele	TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	SENP7	NM_020654	exon13	c.C1753T	p.H585Y	TAGCATGACTCCT		413	8	0.02	238	0	0		170		38	1	0.03				A	101066800	G	A	101066800	3	1	10	1	0	0	0	0	1	0	0	0	14104	1290	45	3	1447	3	SENP7	3	101066800	Missense_Mutation	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10	27955320	101066800	96955630	19	612											
PDS5A	23244	mdanderson.org	37	chr4	39875970	39875970	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcgtgtatacagtgcacaGcctgttttgcttggtgtgga	14	7	0	0	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	PDS5A,NS,carcinoma,0,1	PDS5A	NM_001100399	exon20	c.C2216A	p.A739D	TGCACAGCCTGTT		140	5	0.04	173	0	0		0	1	83	0	0				T	39875970	G	T	39875970	3	4	10	1	0	0	0	0	1	0	0	0	11737	971	34	2	1853	2	PDS5A	4	39875970	Missense_Mutation	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10		39875970	151278306	20	613											
NAA15	80155	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	140270698	140270698	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagaaatcctgaaaactgGgcctattacaaaggcttgga	11	7	0	2	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	NAA15	NM_057175	exon7	c.G774T	p.W258C	AAACTGGGCCTAT		292	16	0.05	378	1	0.0026455026		88		27	0	0				T	140270698	G	T	140270698	3	4	10	1	0	0	0	0	1	0	0	0	10165	1241	43	3	800	3	NAA15	4	140270698	Missense_Mutation	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10	100394728	140270698	50883578	21	614											
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr5	72168496	72168496	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gttgcatgtgtcaatcagttTatcatcagtaggactcaagc	9	8	5	0	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_002270	exon7	c.T627A	p.F209L	TCAGTTTATCATC		97	79	0.81	129	0	0				68	62	0.91				A	72168496	T	A	72168496	3	1	10	1	0	0	0	0	1	0	0	0	16394	1751	61	5	653	5	TNPO1	5	72168496	Missense_Mutation	SNP	T	TCGA-2G-AAFJ-01A-11D-A42Y-10		72168496	108746764	22	615											
FAM193B	54540	broad.mit.edu;mdanderson.org	37	chr5	176963683	176963683	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcgggtggtggccggtgGggctgttagggggagcagtg	24	6	0	0	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	FAM193B	NM_001190946	exon4	c.C752A	p.P251H	CCGGTGGGGCTGT		32	3	0.09	53	0	0		28		54	0	0				T	176963683	G	T	176963683	3	4	10	1	0	0	0	0	1	0	0	0	5556	1232	43	3	1980	3	FAM193B	5	176963683	Missense_Mutation	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10	104795187	176963683	3951577	23	616											
HTR1E	3354	broad.mit.edu	37	chr6	87725556	87725556	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agccaccgccgcctaagcccTccccctagtcagtgcaccat	7	20	1	0	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	HTR1E	NM_000865	exon2	c.T504C	p.P168P	AAGCCCTCCCCCT		140	5	0.04	156	3	0.0192307692		89		1	0	0				C	87725556	T	C	87725556	2	2	10	1	0	0	0	0	0	0	0	1	7482	1538	54	4		4	HTR1E	6	87725556	Silent	SNP	T	TCGA-2G-AAFJ-01A-11D-A42Y-10		87725556	83389511	24	617											
ENPP3	5169	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	131971271	131971271	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	attgctgctgggattttgaaGacacctgtgtggaatcaagt	12	6	1	2	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	ENPP3	NM_005021	exon3	c.G259T	p.D87Y	TTTGAAGACACCT		250	63	0.25	198	2	0.0101010101		117		1	1	1				T	131971271	G	T	131971271	3	4	10	1	0	0	0	0	1	0	0	0	5159	942	33	3	269	3	ENPP3	6	131971271	Missense_Mutation	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10	44245715	131971271	39143796	25	618											
ZNF12	7559	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	6730638	6730638	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taatgtacagtgaggtatgaCatccgagagaaggcttttcc	11	7	0	3	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_016265	exon5	c.G1935A	p.M645I	GTATGACATCCGA		137	7	0.05	114	0	0				82	6	0.07				T	6730638	C	T	6730638	3	4	10	1	0	0	0	0	1	0	0	0	17775	478	17	3	162	3	ZNF12	7	6730638	Missense_Mutation	SNP	C	TCGA-2G-AAFJ-01A-11D-A42Y-10		6730638	152408025	26	619											
MUC17	140453	hgsc.bcm.edu	37	chr7	100678866	100678866	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	taccagcatgccaaactcaaAtcctagtgaaggaaccactc	6	13	1	1	rs77700763	bycluster	TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	MUC17,trunk,malignant_melanoma,0,1	MUC17	NM_001040105	exon3	c.A4169C	p.N1390T	ACTCAAATCCTAG		128	8	0.06	100	1	0.01		0	1	13	0	0				C	100678866	A	C	100678866	3	2	10	1	0	0	0	0	1	0	0	0	10021	101	4	4	4179	4	MUC17	7	100678866	Missense_Mutation	SNP	A	TCGA-2G-AAFJ-01A-11D-A42Y-10	93948228	100678866	58459797	27	620			1	3		3	3	123	N	G_A	4.331538e-08
MUC17	140453	hgsc.bcm.edu	37	chr7	100678918	100678918	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atacctgtcagcaccacgccGgtagtcagttctgaggctag	11	12	3	1	rs200627718	byfrequency	TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	MUC17,colon,carcinoma,+1,1	MUC17	NM_001040105	exon3	c.G4221A	p.P1407P	CACGCCGGTAGTC		148	7	0.05	109	2	0.0183486239	0.002	1	1	13	1	0.08				A	100678918	G	A	100678918	2	1	10	1	0	0	0	0	0	0	0	1	10021	1103	39	1		1	MUC17	7	100678918	Silent	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10	52	100678918	58459745	28	621			1	3		3	3	123	N	G_A	4.331538e-08
MUC17	140453	broad.mit.edu	37	chr7	100678988	100678988	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacccctgggaccacttctGctgaagccacttcatctcct	7	17	3	1	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	MUC17,NS,carcinoma,0,2	MUC17	NM_001040105	exon3	c.G4291A	p.A1431T	ACTTCTGCTGAAG		144	6	0.04	94	0	0		804	2	13	0	0				A	100678988	G	A	100678988	3	1	10	1	0	0	0	0	1	0	0	0	10021	1319	46	2	4301	2	MUC17	7	100678988	Missense_Mutation	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10	70	100678988	58459675	29	622			1	3		3	3	123	N	G_A	4.331538e-08
CUX1	1523	broad.mit.edu	37	chr7	101843351	101843351	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgcaacttctccccacagGtaacatcaccacccggatcc	7	18	2	0	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	CUX1	NM_001202543	exon17	c.G1994T	p.G665V	CCACAGGTAACAT		176	6	0.03	161	0	0		253		16	0	0				T	101843351	G	T	101843351	5	4	10	1	0	0	0	0	0	0	1	0	4087	1275	44	3	2094	3	CUX1	7	101843351	Splice_Site	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10	1164363	101843351	57295312	30	623											
SSPO	23145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr7	149513025	149513025	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggaggtgcctgactgccCggaccctggggtgtggagct	17	12	0	1	rs369846479	alternate_allele	TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_198455	exon77	c.C10928A	p.P3643Q	ACTGCCCGGACCC		140	15	0.11	164	0	0				2	0	0				A	149513025	C	A	149513025	3	1	10	1	0	0	0	0	1	0	0	0	15244	652	23	1	11228	1	SSPO	7	149513025	Missense_Mutation	SNP	C	TCGA-2G-AAFJ-01A-11D-A42Y-10	47669674	149513025	9625638	31	624											
TUSC3	7991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	15517060	15517060	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcatgcattttcctccaaaAggcagacctaagagagctga	8	10	1	3	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_178234	exon4	c.A471G	p.K157K	TCCAAAAGGCAGA		87	29	0.33	72	0	0				387	103	0.27				G	15517060	A	G	15517060	2	3	10	1	0	0	0	0	0	0	0	1	16839	69	3	4		4	TUSC3	8	15517060	Silent	SNP	A	TCGA-2G-AAFJ-01A-11D-A42Y-10		15517060	130846962	32	625											
DCAF13	25879	broad.mit.edu	37	chr8	104439486	104439487	+	Frame_Shift_Ins	INS	-	-	T													ttaacccaattgaggtaatgINStttttttttaagtatgtttt					novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	DCAF13	.	.	.	.	GGTAATGTTTTTT		272	0	0	173	0	0		66		2	0	0				T	104439487	-	T	104439486	7	5	10	1	0	1	1	0	0	0	0	0	4290	1392	48	0		0	DCAF13	8	104439486	Frame_Shift_Ins	INS	-	TCGA-2G-AAFJ-01A-11D-A42Y-10	88922426	104439486	41924536	33	626											
RRAGA	10670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	19050445	19050453	+	In_Frame_Del	DEL	TCGACATCT	TCGACATCT	-													ttccaacttcgctgctttcaTcgacatcttcacctcaaata					novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	TCGACATCT	TCGACATCT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	RRAGA	NM_006570	exon1	c.787_795del	p.263_265del	CTTTCATCGACAT		104	53	0.51	109	0	0		17		168	0	0				-	19050453	TCGACATCT	-	19050445	7	5	10	1	0	1	0	1	0	0	0	0	13723	1435	50	0	790	0	RRAGA	9	19050445	In_Frame_Del	DEL	TCGACATCT	TCGA-2G-AAFJ-01A-11D-A42Y-10		19050445	122162986	34	627											
FBXW5	54461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	139835465	139835465	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcgcatggtgcgtggggagCgccaggctttgatggtggcg	20	9	0	1	rs140846203		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	FBXW5,NS,carcinoma,-1,1	FBXW5	NM_018998	exon9	c.G1616A	p.R539H	GGGGAGCGCCAGG		92	28	0.3	66	0	0	0	-1	1	298	94	0.32				T	139835465	C	T	139835465	3	4	10	1	0	0	0	0	1	0	0	0	5800	768	27	1	88	1	FBXW5	9	139835465	Missense_Mutation	SNP	C	TCGA-2G-AAFJ-01A-11D-A42Y-10	120785020	139835465	1377966	35	628											
CCAR1	55749	broad.mit.edu	37	chr10	70516152	70516152	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggcattgccttcccacccGctcagagtgggaaaccctct	9	15	2	1	rs142459122		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	CCAR1	NM_018237	exon14	c.G1748A	p.R583H	CCACCCGCTCAGA		155	4	0.03	157	0	0		118		98	0	0				A	70516152	G	A	70516152	3	1	10	1	0	0	0	0	1	0	0	0	2748	1087	38	1	1798	1	CCAR1	10	70516152	Missense_Mutation	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10		70516152	65018595	36	629											
ZNF503	84858	broad.mit.edu	37	chr10	77159836	77159836	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cccgacttctccgacgaaacAcccccgccgccgcccccgcc	7	25	1	0	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	ZNF503	NM_032772	exon2	c.T612G	p.G204G	CGAAACACCCCCG		50	11	0.22	60	14	0.2333333333		25		6	0	0				C	77159836	A	C	77159836	2	2	10	1	0	0	0	0	0	0	0	1	18007	146	6	4		4	ZNF503	10	77159836	Silent	SNP	A	TCGA-2G-AAFJ-01A-11D-A42Y-10	6643684	77159836	58374911	37	630											
CWF19L1	55280	broad.mit.edu	37	chr10	101997853	101997853	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcgactcttaaagaaccGtctcagagtggccttatact	7	13	2	2	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	CWF19L1	NM_018294	exon11	c.C1180A	p.R394R	AGAACCGTCTCAG		226	5	0.02	206	0	0		39		75	0	0				T	101997853	G	T	101997853	2	4	10	1	0	0	0	0	0	0	0	1	4094	1144	40	1		1	CWF19L1	10	101997853	Silent	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10	24838017	101997853	33536894	38	631											
PKD2L1	9033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	102052770	102052770	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaccctgcaggaccttctgCacatccgaaaccctctcctt	5	19	2	0	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_016112	exon11	c.G1815A	p.V605V	CTTCTGCACATCC		223	61	0.27	227	0	0				0	0					T	102052770	C	T	102052770	2	4	10	1	0	0	0	0	0	0	0	1	12014	697	25	2		2	PKD2L1	10	102052770	Silent	SNP	C	TCGA-2G-AAFJ-01A-11D-A42Y-10	54917	102052770	33481977	39	632											
BAG3	9531	broad.mit.edu	37	chr10	121432017	121432017	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaccacaagatccagggggAtgactgggagccccggcccc	14	14	0	2	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	BAG3	NM_004281	exon3	c.A758G	p.D253G	AGGGGGATGACTG		165	4	0.02	114	1	0.0087719298		42		77	0	0				G	121432017	A	G	121432017	3	3	10	1	0	0	0	0	1	0	0	0	1286	333	12	4	768	4	BAG3	10	121432017	Missense_Mutation	SNP	A	TCGA-2G-AAFJ-01A-11D-A42Y-10	19379247	121432017	14102730	40	633											
MUC6	4588	bcgsc.ca	37	chr11	1016801	1016801	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgggaagtgtggtctgaggGtgtgatggggttggataggt	22	1	1	2	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	MUC6	NM_005961	exon31	c.C6000G	p.H2000Q	CTGAGGGTGTGAT		393	19	0.05	453	9	0.0198675497		408		11	0	0				C	1016801	G	C	1016801	3	2	10	1	0	0	0	0	1	0	0	0	10027	1252	44	5	1331	5	MUC6	11	1016801	Missense_Mutation	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10		1016801	133989715	41	634											
MUC6	4588	bcgsc.ca	37	chr11	1017824	1017824	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tgggtggaccctgtggccttGagcgttgtcggtggaggaat	18	7	0	1	rs201767599		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	MUC6	NM_005961	exon31	c.C4977G	p.L1659L	GGCCTTGAGCGTT		311	20	0.06	317	5	0.0157728707		408		3	0	0				C	1017824	G	C	1017824	2	2	10	1	0	0	0	0	0	0	0	1	10027	1277	45	5		5	MUC6	11	1017824	Silent	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10	1023	1017824	133988692	42	635											
MUC2	4583	mdanderson.org	37	chr11	1093293	1093293	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgacacccatcaccaccacCactacggtgaccccaacccc	4	22	1	1	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_002457	exon30	c.C5112G	p.T1704T	CACCACCACTACG		26	3	0.12	31	0	0				9	1	0.11				G	1093293	C	G	1093293	2	3	10	1	0	0	0	0	0	0	0	1	10022	581	21	5		5	MUC2	11	1093293	Silent	SNP	C	TCGA-2G-AAFJ-01A-11D-A42Y-10	75469	1093293	133913223	43	636											
CTSD	1509	mdanderson.org	37	chr11	1775285	1775285	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcgcgcacctcatccaccGggcccaccatgagggaagtg	12	16	1	1	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_001909	exon7	c.C911T	p.P304L	TCCACCGGGCCCA		43	4	0.09	52	0	0				549	0	0				A	1775285	G	A	1775285	3	1	10	1	0	0	0	0	1	0	0	0	4056	1116	39	1	339	1	CTSD	11	1775285	Missense_Mutation	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10	681992	1775285	133231231	44	637											
PACS1	55690	broad.mit.edu;mdanderson.org	37	chr11	66001320	66001320	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgggaggccagagctacCtgagctccatcctcaggttc	12	13	1	2	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	PACS1	NM_018026	exon16	c.C1903G	p.L635V	AGCTACCTGAGCT		75	4	0.05	117	0	0		71		48	2	0.04				G	66001320	C	G	66001320	3	3	10	1	0	0	0	0	1	0	0	0	11418	680	24	5	1965	5	PACS1	11	66001320	Missense_Mutation	SNP	C	TCGA-2G-AAFJ-01A-11D-A42Y-10	64226035	66001320	69005196	45	638											
TAF1D	79101	broad.mit.edu	37	chr11	93469897	93469897	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attcgttatcttcaagatgtGttgcatcctcatcctctgct	6	11	4	1	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	TAF1D	NM_024116	exon5	c.C656A	p.T219K	AGATGTGTTGCAT		317	6	0.02	377	0	0		18		98	0	0				T	93469897	G	T	93469897	3	4	10	1	0	0	0	0	1	0	0	0	15578	1377	48	3	188	3	TAF1D	11	93469897	Missense_Mutation	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10	27468577	93469897	41536619	46	639											
SCN4B	6330	broad.mit.edu	37	chr11	118015783	118015783	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatacttacaatcttgaatgCgtcactgctgttgtaggtcc	8	9	2	1	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	SCN4B	NM_174934	exon2	c.G223A	p.A75T	TGAATGCGTCACT		129	4	0.03	164	0	0		18		5	0	0				T	118015783	C	T	118015783	3	4	10	1	0	0	0	0	1	0	0	0	13974	768	27	1	479	1	SCN4B	11	118015783	Missense_Mutation	SNP	C	TCGA-2G-AAFJ-01A-11D-A42Y-10	24545886	118015783	16990733	47	640											
CD69	969	broad.mit.edu	37	chr12	9907234	9907234	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccatgggtgaccaggttccTttttcagtccaacccagtgt	9	12	1	1	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	CD69	NM_001781	exon4	c.A440G	p.K147R	GGTTCCTTTTTCA		610	4	0.01	236	0	0		23		3	0	0				C	9907234	T	C	9907234	3	2	10	1	0	0	0	0	1	0	0	0	3053	1609	56	4	167	4	CD69	12	9907234	Missense_Mutation	SNP	T	TCGA-2G-AAFJ-01A-11D-A42Y-10		9907234	123944661	48	641											
C12orf36	283422	broad.mit.edu	37	chr12	13526327	13526327	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcagaatgtgtctacgagCgctctgactcttccagggaa	11	11	3	2	rs146660868	alternate_allele	TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	C12orf36	.	.	.	.	TACGAGCGCTCTG		556	8	0.01	180	0	0		17		0	0					G	13526327	C	G	13526327	2	3	10	1	0	0	0	0	0	0	0	1	1689	755	27	5		5	C12orf36	12	13526327	Silent	SNP	C	TCGA-2G-AAFJ-01A-11D-A42Y-10	3619093	13526327	120325568	49	642											
GYS2	2998	broad.mit.edu	37	chr12	21693436	21693436	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgtgactgtttgcaaaatcCatagagaaacttagtcagct	9	8	1	2	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	GYS2	NM_021957	exon14	c.G1717A	p.G573R	AAAATCCATAGAG		321	7	0.02	127	0	0		110		2	0	0				T	21693436	C	T	21693436	3	4	10	1	0	0	0	0	1	0	0	0	6953	603	21	3	406	3	GYS2	12	21693436	Missense_Mutation	SNP	C	TCGA-2G-AAFJ-01A-11D-A42Y-10	8167109	21693436	112158459	50	643											
YARS2	51067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	32908276	32908276	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agtccaccaggtgctgcttcTggtaccaggccgagttgtcc	12	13	1	0	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_001040436	exon1	c.A533G	p.Q178R	TGCTTCTGGTACC		396	54	0.14	172	0	0				88	7	0.08				C	32908276	T	C	32908276	3	2	10	1	0	0	0	0	1	0	0	0	17527	1580	55	4	920	4	YARS2	12	32908276	Missense_Mutation	SNP	T	TCGA-2G-AAFJ-01A-11D-A42Y-10	11214840	32908276	100943619	51	644											
KRT3	3850	mdanderson.org	37	chr12	53189775	53189775	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagaccacagcagagcggcCggagaaaccctggctcccgc	14	15	0	3	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_057088	exon1	c.G52T	p.G18C	AGCGGCCGGAGAA		41	3	0.07	53	0	0				0	0					A	53189775	C	A	53189775	3	1	10	1	0	0	0	0	1	0	0	0	8508	652	23	1	1870	1	KRT3	12	53189775	Missense_Mutation	SNP	C	TCGA-2G-AAFJ-01A-11D-A42Y-10	20281499	53189775	80662120	52	645											
N4BP2L1	90634	mdanderson.org	37	chr13	32981884	32981884	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atccgtgctgaaaatcagggCcctgggaaagtcatgctgca	12	10	2	1	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_052818	exon2	c.G205A	p.A69T	TCAGGGCCCTGGG		43	3	0.07	73	0	0				10	0	0				T	32981884	C	T	32981884	3	4	10	1	0	0	0	0	1	0	0	0	10158	739	26	2	615	2	N4BP2L1	13	32981884	Missense_Mutation	SNP	C	TCGA-2G-AAFJ-01A-11D-A42Y-10		32981884	82187994	53	646											
DCLK1	9201	mdanderson.org	37	chr13	36700232	36700232	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtatctctgcgccttatcccGctcgtcgaagtgctccagct	9	15	1	0	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_004734	exon2	c.C43T	p.R15W	TATCCCGCTCGTC		35	3	0.09	45	0	0				5	0	0				A	36700232	G	A	36700232	3	1	10	1	0	0	0	0	1	0	0	0	4314	1086	38	1	2214	1	DCLK1	13	36700232	Missense_Mutation	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10	3718348	36700232	78469646	54	647											
CARS2	79587	mdanderson.org	37	chr13	111299558	111299558	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	aggagcagctgctgagcttgGagcatggcgctgtcactgta	15	9	1	1	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_024537	exon11	c.C1083A	p.L361L	AGCTTGGAGCATG		37	3	0.08	58	0	0				70	0	0				T	111299558	G	T	111299558	2	4	10	1	0	0	0	0	0	0	0	1	2676	1161	41	3		3	CARS2	13	111299558	Silent	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10	74599326	111299558	3870320	55	648											
MLH3	27030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	75508402	75508402	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaacagtatcatccacagtAtctagggcaaaagggaacag	9	9	2	0	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_014381	exon4	c.T3381C	p.D1127D	CACAGTATCTAGG		112	25	0.22	84	0	0				38	10	0.26				G	75508402	A	G	75508402	2	3	10	1	0	0	0	0	0	0	0	1	9665	463	16	4		4	MLH3	14	75508402	Silent	SNP	A	TCGA-2G-AAFJ-01A-11D-A42Y-10		75508402	31841138	56	649											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr16	30748508	30748508	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggcacccaccggcgcagtAaaaaggccaaagcccctgag	12	14	0	1	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_006662	exon34	c.A7147T	p.K2383X	CGCAGTAAAAAGG		89	12	0.13	104	0	0				78	10	0.13				T	30748508	A	T	30748508	4	4	10	1	0	0	0	0	0	1	0	0	15190	363	13	5	7273	5	SRCAP	16	30748508	Nonsense_Mutation	SNP	A	TCGA-2G-AAFJ-01A-11D-A42Y-10		30748508	59606245	57	650											
FAM101B	359845	broad.mit.edu	37	chr17	295717	295717	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacagccgggagccagggggAgagacgctggactcttcaag	16	11	2	1	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	FAM101B	.	.	.	.	AGGGGGAGAGACG		618	6	0.01	470	1	0.0021276596		19		10	0	0				G	295717	A	G	295717	3	3	10	1	0	0	0	0	1	0	0	0	5412	291	11	4	428	4	FAM101B	17	295717	Missense_Mutation	SNP	A	TCGA-2G-AAFJ-01A-11D-A42Y-10		295717	80899493	58	651											
BTBD17	388419	mdanderson.org	37	chr17	72353826	72353826	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggccagtctgtgcagggggAtggcctgggtcagcagcacg	18	10	2	0	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_001080466	exon3	c.T407C	p.I136T	AGGGGGATGGCCT		50	3	0.06	44	0	0				2	0	0				G	72353826	A	G	72353826	3	3	10	1	0	0	0	0	1	0	0	0	1544	333	12	4	1033	4	BTBD17	17	72353826	Missense_Mutation	SNP	A	TCGA-2G-AAFJ-01A-11D-A42Y-10	72058109	72353826	8841384	59	652											
CASKIN2	57513	broad.mit.edu	37	chr17	73498806	73498806	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgggggagtggcagggggCccggccaagtaggagaaggc	21	8	1	1	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	CASKIN2	NM_020753	exon18	c.C2349C	p.S783S	AGGGGGCCCGGCC		54	5	0.09	52	6	0.1153846154		66		43	8	0.19				G	73498806	C	G	73498806	2	3	10	1	0	0	0	0	0	0	0	1	2685	726	26	5		5	CASKIN2	17	73498806	Silent	SNP	C	TCGA-2G-AAFJ-01A-11D-A42Y-10	1144980	73498806	7696404	60	653											
QRICH2	84074	mdanderson.org	37	chr17	74274126	74274126	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagctcgcggattatctgGctgctggccttggtggagcc	15	11	1	0	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_032134	exon15	c.C4563A	p.S1521R	TATCTGGCTGCTG		37	3	0.08	27	0	0				14	0	0				T	74274126	G	T	74274126	3	4	10	1	0	0	0	0	1	0	0	0	12931	1194	42	2	448	2	QRICH2	17	74274126	Missense_Mutation	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10	775320	74274126	6921084	61	654											
CCDC40	55036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr17	78023947	78023947	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagcacctggtacacctgCagaagctgctggagaagagt	13	10	0	3	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_017950	exon7	c.C1024T	p.Q342X	CACCTGCAGAAGC		86	18	0.21	104	0	0				9	3	0.33				T	78023947	C	T	78023947	4	4	10	1	0	0	0	0	0	1	0	0	2831	711	25	2	1050	2	CCDC40	17	78023947	Nonsense_Mutation	SNP	C	TCGA-2G-AAFJ-01A-11D-A42Y-10	3749821	78023947	3171263	62	655											
MED16	10025	broad.mit.edu;mdanderson.org	37	chr19	889725	889725	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tccactaggctgcccactgaGctctcccagctattagccag	8	16	1	1	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	MED16	NM_005481	exon4	c.C360G	p.S120R	CACTGAGCTCTCC		114	5	0.04	147	0	0		61		125	0	0				C	889725	G	C	889725	3	2	10	1	0	0	0	0	1	0	0	0	9483	962	34	5	2325	5	MED16	19	889725	Missense_Mutation	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10		889725	58239258	63	656											
PCSK4	54760	hgsc.bcm.edu	37	chr19	1482012	1482012	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtccagcgtggaggatgGgggacaggaggtgcagtccc	19	9	0	0	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_017573	exon15	c.C2014A	p.P672T	AGGATGGGGGACA		26	4	0.15	27	0	0				3	0	0				T	1482012	G	T	1482012	3	4	10	1	0	0	0	0	1	0	0	0	11648	1232	43	3	257	3	PCSK4	19	1482012	Missense_Mutation	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10	592287	1482012	57646971	64	657											
ZFR2	23217	broad.mit.edu;mdanderson.org	37	chr19	3822136	3822136	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aggtccttcgcgttaaggtcGttgaaactgcactcgcacag	11	11	0	1	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	ZFR2	NM_015174	exon9	c.C1434G	p.N478K	AAGGTCGTTGAAA		68	4	0.06	64	0	0		63		1	0	0				C	3822136	G	C	3822136	3	2	10	1	0	0	0	0	1	0	0	0	17717	1136	40	5	1429	5	ZFR2	19	3822136	Missense_Mutation	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10	2340124	3822136	55306847	65	658											
SYCE2	256126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	13011447	13011447	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gatcctctcctctaatttctCtgtcagatccgaaacctgtt	5	13	4	1	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_001105578	exon4	c.G322C	p.E108Q	ATTTCTCTGTCAG		103	17	0.17	119	0	0				10	2	0.2				G	13011447	C	G	13011447	3	3	10	1	0	0	0	0	1	0	0	0	15485	922	32	5	346	5	SYCE2	19	13011447	Missense_Mutation	SNP	C	TCGA-2G-AAFJ-01A-11D-A42Y-10	9189311	13011447	46117536	66	659											
FAM32A	26017	broad.mit.edu	37	chr19	16296279	16296279	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcctacgagcaggtccaaaAgggacccctgaagctgaaag	13	11	0	2	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	FAM32A	NM_014077	exon1	c.A26G	p.K9R	TCCAAAAGGGACC		127	4	0.03	181	1	0.0055248619		6		289	0	0				G	16296279	A	G	16296279	3	3	10	1	0	0	0	0	1	0	0	0	5587	72	3	4	28	4	FAM32A	19	16296279	Missense_Mutation	SNP	A	TCGA-2G-AAFJ-01A-11D-A42Y-10	3284832	16296279	42832704	67	660											
ANKLE1	126549	broad.mit.edu	37	chr19	17397498	17397501	+	Frame_Shift_Del	DEL	TGTT	TGTT	-													tgtgtgtgtgtgtgtgtgtgTgtttgtgtgtgtgtgtgtgt					rs35771129	alternate_allele	TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	TGTT	TGTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	ANKLE1	.	.	.	.	TGTGTGTGTTTGT		14	11	0.79	19	0	0		27		3	0	0				-	17397501	TGTT	-	17397498	7	5	10	1	0	1	0	1	0	0	0	0	628	1711	59	0		0	ANKLE1	19	17397498	Frame_Shift_Del	DEL	TGTT	TCGA-2G-AAFJ-01A-11D-A42Y-10	1101219	17397498	41731485	68	661											
FAM187B	148109	mdanderson.org	37	chr19	35716025	35716025	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgcagctgcctgccgccGgtggaggggtccagaaaggt	16	12	0	1	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_152481	exon2	c.C813A	p.T271T	GCCGCCGGTGGAG		49	3	0.06	46	0	0				0	0					T	35716025	G	T	35716025	2	4	10	1	0	0	0	0	0	0	0	1	5543	1103	39	1		1	FAM187B	19	35716025	Silent	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10	18318527	35716025	23412958	69	662											
CAPNS1	826	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	36632054	36632054	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcggcggcggcggcggCggtggtggaggcggcggtgg	28	9	0	0	rs17879825		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	CAPNS1	NM_001749	exon2	c.C141T	p.G47G	CGGCGGCGGTGGT		115	8	0.07	65	1	0.0153846154		19		2	0	0				T	36632054	C	T	36632054	2	4	10	1	0	0	0	0	0	0	0	1	2651	755	27	1		1	CAPNS1	19	36632054	Silent	SNP	C	TCGA-2G-AAFJ-01A-11D-A42Y-10	916029	36632054	22496929	70	663											
ARHGEF1	9138	mdanderson.org	37	chr19	42409964	42409964	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acggcaatggtggccgagagAcgtctccagctgatggtgag	16	9	1	3	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	ARHGEF1,NS,carcinoma,-2,1	ARHGEF1	NM_199002	exon25	c.A2434G	p.T812A	CGAGAGACGTCTC		46	3	0.07	73	1	0.0136986301		-2	1	157	1	0.01				G	42409964	A	G	42409964	3	3	10	1	0	0	0	0	1	0	0	0	890	275	10	4	2532	4	ARHGEF1	19	42409964	Missense_Mutation	SNP	A	TCGA-2G-AAFJ-01A-11D-A42Y-10	5777910	42409964	16719019	71	664											
CDH22	64405	broad.mit.edu	37	chr20	44879773	44879773	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacgcggccggctcccagcGcgccgtcctgccgagctccg	14	19	0	1	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	CDH22	NM_021248	exon2	c.C161A	p.A54E	CCCAGCGCGCCGT		120	3	0.03	75	0	0		112		0	0					T	44879773	G	T	44879773	3	4	10	1	0	0	0	0	1	0	0	0	3129	1087	38	1	2369	1	CDH22	20	44879773	Missense_Mutation	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10		44879773	18145747	72	665											
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	57485046	57485046	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgatcctgttcctcaacaagCaagatctgctcgctgagaaa	8	11	2	3	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_080425	exon11	c.C2809G	p.Q937E	AACAAGCAAGATC		104	25	0.24	107	0	0				4628	1556	0.34				G	57485046	C	G	57485046	3	3	10	1	0	0	0	0	1	0	0	0	6551	711	25	5	3739	5	GNAS	20	57485046	Missense_Mutation	SNP	C	TCGA-2G-AAFJ-01A-11D-A42Y-10	12605273	57485046	5540474	73	666											
TFF3	7033	broad.mit.edu	37	chr21	43733726	43733726	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgtccttggctggcacgGcacactggtttgcagctgtc	12	14	0	0	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	TFF3	NM_003226	exon2	c.C140T	p.A47V	GGCACGGCACACT		91	4	0.04	71	0	0		9		229	0	0				A	43733726	G	A	43733726	3	1	10	1	0	0	0	0	1	0	0	0	15864	1203	42	2	152	2	TFF3	21	43733726	Missense_Mutation	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10		43733726	4396169	74	667											
TRABD	80305	mdanderson.org	37	chr22	50633425	50633425	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agagcacgctgctgcgggagGcccaggagctcagcctggag	17	12	1	1	novel		TCGA-2G-AAFJ-01A-11D-A42Y-10	TCGA-2G-AAFJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7ec7db5-2a0a-4300-aedc-f26b90255648	5bc449b5-fc22-49d0-9145-887f4c16e2ea	.	.	NM_025204	exon5	c.G376T	p.A126S	CGGGAGGCCCAGG		37	3	0.08	39	0	0				33	0	0				T	50633425	G	T	50633425	3	4	10	1	0	0	0	0	1	0	0	0	16495	1203	42	2	390	2	TRABD	22	50633425	Missense_Mutation	SNP	G	TCGA-2G-AAFJ-01A-11D-A42Y-10		50633425	671141	75	668											
ARHGEF16	27237	mdanderson.org	37	chr1	3396390	3396390	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	atgcagacctgccccaggtgGagatcaccaaggccttcttc	10	14	2	2	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_014448	exon14	c.G1903T	p.E635X	CAGGTGGAGATCA		42	3	0.07	47	0	0				96	0	0				T	3396390	G	T	3396390	4	4	11	1	0	0	0	0	0	1	0	0	896	1175	41	3	1953	3	ARHGEF16	1	3396390	Nonsense_Mutation	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10		3396390	245854231	1	669											
ECE1	1889	broad.mit.edu	37	chr1	21586876	21586876	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctcgctcacgctggccGtggagttttctggaacaaca	11	13	2	0	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	ECE1	NM_001397	exon5	c.C503T	p.T168M	CTGGCCGTGGAGT		108	4	0.04	101	0	0		76		24	0	0				A	21586876	G	A	21586876	3	1	11	1	0	0	0	0	1	0	0	0	4915	1145	40	1	1869	1	ECE1	1	21586876	Missense_Mutation	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10	18190486	21586876	227663745	2	670											
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	103488447	103488447	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	aagatcagaatccctgccgtCtatttctttgttttcatata	5	9	4	2	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	COL11A1,NS,carcinoma,+2,1	COL11A1	NM_080629	exon8	c.G1132T	p.D378Y	TGCCGTCTATTTC		125	15	0.12	147	0	0		2	1	0	0					A	103488447	C	A	103488447	3	1	11	1	0	0	0	0	1	0	0	0	3690	913	32	3	4564	3	COL11A1	1	103488447	Missense_Mutation	SNP	C	TCGA-2G-AAFL-01A-21D-A42Y-10	81901571	103488447	145762174	3	671											
OLFML3	56944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	114524091	114524091	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttagatccacagacactggaCacagagcagcagtgggacac	11	11	0	3	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	OLFML3,NS,carcinoma,+2,1	OLFML3	NM_020190	exon3	c.C921T	p.D307D	ACTGGACACAGAG		115	15	0.13	95	0	0		2	1	54	1	0.02				T	114524091	C	T	114524091	2	4	11	1	0	0	0	0	0	0	0	1	10906	477	17	3		3	OLFML3	1	114524091	Silent	SNP	C	TCGA-2G-AAFL-01A-21D-A42Y-10	11035644	114524091	134726530	4	672											
ARNT	405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	150785719	150785719	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ttgctcactagaacttgaacGatgatgaggctgctggccct	11	10	1	4	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_001668	exon21	c.C2209G	p.R737G	TTGAACGATGATG		169	28	0.17	149	0	0				21	4	0.19				C	150785719	G	C	150785719	3	2	11	1	0	0	0	0	1	0	0	0	964	1058	37	5	168	5	ARNT	1	150785719	Missense_Mutation	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10	36261628	150785719	98464902	5	673											
SLC39A10	57181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	196581655	196581655	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggatccgatctgaaagaaaCaggaatagctaatatagcct	9	7	1	2	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_020342	exon7	c.C1991T	p.T664I	AAGAAACAGGAAT		107	10	0.09	122	0	0				5	2	0.4				T	196581655	C	T	196581655	3	4	11	1	0	0	0	0	1	0	0	0	14667	478	17	3	2013	3	SLC39A10	2	196581655	Missense_Mutation	SNP	C	TCGA-2G-AAFL-01A-21D-A42Y-10		196581655	46617718	6	674											
LMCD1	29995	bcgsc.ca	37	chr3	8543418	8543418	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcgcgctgggattggctGgcctcgcgcgagcgccggcg	18	15	0	0	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	LMCD1	.	.	.	.	TTGGCTGGCCTCG		29	7	0.24	39	0	0		38		0	0					T	8543418	G	T	8543418	3	4	11	1	0	0	0	0	1	0	0	0	8884	1363	47	3		3	LMCD1	3	8543418	Missense_Mutation	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10		8543418	189479012	7	675											
LIMD1	8994	broad.mit.edu	37	chr3	45637462	45637462	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacggttcacagcagggtgCggtccctgggctggggccga	19	11	1	0	rs371029378		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	LIMD1	NM_014240	exon1	c.C1091T	p.A364V	AGGGTGCGGTCCC		194	4	0.02	212	0	0		34		0	0					T	45637462	C	T	45637462	3	4	11	1	0	0	0	0	1	0	0	0	8837	768	27	1	1093	1	LIMD1	3	45637462	Missense_Mutation	SNP	C	TCGA-2G-AAFL-01A-21D-A42Y-10	37094044	45637462	152384968	8	676											
PLXNB1	5364	mdanderson.org	37	chr3	48445924	48445924	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaccttgttttccacagcaGctgcaatctgctggagccga	10	12	1	1	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_001130082	exon38	c.C6377A	p.A2126D	ACAGCAGCTGCAA		44	3	0.07	55	0	0				65	0	0				T	48445924	G	T	48445924	3	4	11	1	0	0	0	0	1	0	0	0	12170	971	34	2	34	2	PLXNB1	3	48445924	Missense_Mutation	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10	2808462	48445924	149576506	9	677											
C3orf58	205428	mdanderson.org	37	chr3	143691653	143691653	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgtctgctcacgcccgaggCggtggagggctggtcggacc	18	13	2	0	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_173552	exon1	c.C479T	p.A160V	CCGAGGCGGTGGA		16	3	0.19	27	0	0				0	0					T	143691653	C	T	143691653	3	4	11	1	0	0	0	0	1	0	0	0	2250	768	27	1	481	1	C3orf58	3	143691653	Missense_Mutation	SNP	C	TCGA-2G-AAFL-01A-21D-A42Y-10	95245729	143691653	54330777	10	678											
NDUFB5	4711	mdanderson.org	37	chr3	179322665	179322665	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggcagctctgtctggccGgccccttggcactcgcctcg	14	16	2	0	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_001199958	exon1	c.G62T	p.R21L	CTGGCCGGCCCCT		72	3	0.04	106	0	0				149	0	0				T	179322665	G	T	179322665	3	4	11	1	0	0	0	0	1	0	0	0	10330	1116	39	1	64	1	NDUFB5	3	179322665	Missense_Mutation	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10	35631012	179322665	18699765	11	679											
DSPP	1834	bcgsc.ca	37	chr4	88537027	88537027	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagcagtgatagcagtgaCagcagtgacagcagcgacag	14	9	0	3	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	DSPP	NM_014208	exon5	c.C3213A	p.D1071E	CAGTGACAGCAGT		99	7	0.07	115	1	0.0086956522		174		0	0					A	88537027	C	A	88537027	3	1	11	1	0	0	0	0	1	0	0	0	4808	477	17	3	3227	3	DSPP	4	88537027	Missense_Mutation	SNP	C	TCGA-2G-AAFL-01A-21D-A42Y-10		88537027	102617249	12	680											
FAM170A	340069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr5	118965473	118965473	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tagctgatatcatgaaacgaCgacaaaagaggaaacatttg	9	6	1	3	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_182761	exon1	c.C10T	p.R4X	AAACGACGACAAA		101	20	0.2	74	0	0				7	0	0				T	118965473	C	T	118965473	4	4	11	1	0	0	0	0	0	1	0	0	5518	528	19	1	12	1	FAM170A	5	118965473	Nonsense_Mutation	SNP	C	TCGA-2G-AAFL-01A-21D-A42Y-10		118965473	61949787	13	681											
PDE6A	5145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	149323894	149323894	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggacagcatccttgtggaCattgaaaagcctggtggcca	13	9	0	1	rs147159579	bycluster;byfrequency	TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_000440	exon1	c.G343A	p.V115I	TGTGGACATTGAA		122	13	0.11	111	0	0	0.001			0	0					T	149323894	C	T	149323894	3	4	11	1	0	0	0	0	1	0	0	0	11691	478	17	3	2327	3	PDE6A	5	149323894	Missense_Mutation	SNP	C	TCGA-2G-AAFL-01A-21D-A42Y-10	30358421	149323894	31591366	14	682											
FLT4	2324	mdanderson.org	37	chr5	180055910	180055910	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgggcggggggtacgctgCcagcttcacgggcagcttca	16	13	2	0	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_182925	exon8	c.G1075A	p.A359T	ACGCTGCCAGCTT		47	3	0.06	55	0	0				1	0	0				T	180055910	C	T	180055910	3	4	11	1	0	0	0	0	1	0	0	0	5976	739	26	2	3116	2	FLT4	5	180055910	Missense_Mutation	SNP	C	TCGA-2G-AAFL-01A-21D-A42Y-10	30732016	180055910	859350	15	683											
MAP3K4	4216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	161533755	161533755	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagagggccatgggcgtgcGgccgacatctggagtctggg	20	9	2	1	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_005922	exon25	c.G4575A	p.A1525A	GCGTGCGGCCGAC		130	7	0.05	153	0	0				90	20	0.22				A	161533755	G	A	161533755	2	1	11	1	0	0	0	0	0	0	0	1	9301	1103	39	1		1	MAP3K4	6	161533755	Silent	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10		161533755	9581312	16	684											
CASD1	64921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	94183874	94183874	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	attttttgcttggtttggaaAaatttcattagaggttggta	10	2	1	1	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_022900	exon17	c.A2114T	p.K705I	TTGGAAAAATTTC		115	15	0.13	93	0	0				16	0	0				T	94183874	A	T	94183874	3	4	11	1	0	0	0	0	1	0	0	0	2682	14	1	5	2180	5	CASD1	7	94183874	Missense_Mutation	SNP	A	TCGA-2G-AAFL-01A-21D-A42Y-10		94183874	64954789	17	685											
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	113518008	113518008	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	actagtagaagcagagctgtCagattccttttcacctgaag	9	9	2	4	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_002711	exon4	c.G3139A	p.D1047N	AGCTGTCAGATTC		103	6	0.06	109	0	0				0	0					T	113518008	C	T	113518008	3	4	11	1	0	0	0	0	1	0	0	0	12419	826	29	3	233	3	PPP1R3A	7	113518008	Missense_Mutation	SNP	C	TCGA-2G-AAFL-01A-21D-A42Y-10	19334134	113518008	45620655	18	686											
CSMD1	64478	mdanderson.org	37	chr8	3326282	3326282	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaatgctatcatccgactGcagatgtagccacatctggt	9	12	2	1	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_033225	exon12	c.C1513A	p.Q505K	CCGACTGCAGATG		45	3	0.07	36	0	0				0	0					T	3326282	G	T	3326282	3	4	11	1	0	0	0	0	1	0	0	0	3969	1328	46	2	9230	2	CSMD1	8	3326282	Missense_Mutation	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10		3326282	143037740	19	687											
MCPH1	79648	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	6302344	6302344	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	catggctcccattcacctccGaaggaaaaatgcaagagaaa	8	11	1	1	rs201084851	bycluster;by1000genomes	TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	MCPH1_ENST00000344683,colon,carcinoma,+1,1	MCPH1_ENST00000344683	NM_001172574	exon8	c.G1101A	p.P367P	ACCTCCGAAGGAA		127	8	0.06	163	0	0		1	1	10	0	0				A	6302344	G	A	6302344	2	1	11	1	0	0	0	0	0	0	0	1	9447	1045	37	1		1	MCPH1	8	6302344	Silent	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10	2976062	6302344	140061678	20	688											
EGR3	1960	hgsc.bcm.edu;broad.mit.edu	37	chr8	22548865	22548865	+	Frame_Shift_Del	DEL	G	G	-													atgttgtcctggcaccagttGgaaggggagtcgaaggcgaa					novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	EGR3	NM_004430	exon2	c.286delA	p.N96fs	CCAGTTGGAAGGG		121	11	0.09	124	0	0		33		1	0	0				-	22548865	G	-	22548865	7	5	11	1	0	1	0	1	0	0	0	0	4999	1335	47	0	882	0	EGR3	8	22548865	Frame_Shift_Del	DEL	G	TCGA-2G-AAFL-01A-21D-A42Y-10	16246521	22548865	123815157	21	689											
GDF6	392255	mdanderson.org	37	chr8	97157137	97157137	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccgtgccgcttgccatggCgactggcgaaggccgtgcgc	16	14	0	0	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	GDF6,NS,carcinoma,0,1	GDF6	NM_001001557	exon2	c.G1022A	p.R341H	CCATGGCGACTGG		44	3	0.07	39	0	0		0	1	0	0					T	97157137	C	T	97157137	3	4	11	1	0	0	0	0	1	0	0	0	6358	768	27	1	349	1	GDF6	8	97157137	Missense_Mutation	SNP	C	TCGA-2G-AAFL-01A-21D-A42Y-10	74608272	97157137	49206885	22	690											
PHF20L1	51105	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	133826993	133826993	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctttgtcttcagggaaggctCgcagcaagaaatgcaaacat	10	9	2	1	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	PHF20L1	NM_016018	exon10	c.C1042T	p.R348C	AAGGCTCGCAGCA		245	23	0.09	261	1	0.0038314176		129		14	2	0.14				T	133826993	C	T	133826993	3	4	11	1	0	0	0	0	1	0	0	0	11879	884	31	1	1082	1	PHF20L1	8	133826993	Missense_Mutation	SNP	C	TCGA-2G-AAFL-01A-21D-A42Y-10	36669856	133826993	12537029	23	691											
MAFA	389692	mdanderson.org	37	chr8	144512464	144512464	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggtggcagaagcgctcgGcctcgggaggctccttcttc	16	13	1	1	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_201589	exon1	c.C113A	p.A38D	CGCTCGGCCTCGG		43	3	0.07	43	0	0				2	0	0				T	144512464	G	T	144512464	3	4	11	1	0	0	0	0	1	0	0	0	9202	1203	42	2	952	2	MAFA	8	144512464	Missense_Mutation	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10	10685471	144512464	1851558	24	692											
ADAMTS14	140766	mdanderson.org	37	chr10	72489934	72489934	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggcacactcccagcagcGccaggaccccagccacgctg	11	19	0	0	rs202093253	by1000genomes;alternate_allele	TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_139155	exon6	c.G1031T	p.R344L	AGCAGCGCCAGGA		42	3	0.07	42	0	0				2	0	0				T	72489934	G	T	72489934	3	4	11	1	0	0	0	0	1	0	0	0	258	1087	38	1	1053	1	ADAMTS14	10	72489934	Missense_Mutation	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10		72489934	63044813	25	693											
AVPI1	60370	mdanderson.org	37	chr10	99439617	99439617	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccccgggcctcaatcggggCctgccaagggggtggctcac	16	15	2	0	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_021732	exon2	c.G46A	p.A16T	TCGGGGCCTGCCA		45	3	0.07	77	0	0				30	0	0				T	99439617	C	T	99439617	3	4	11	1	0	0	0	0	1	0	0	0	1228	739	26	2	405	2	AVPI1	10	99439617	Missense_Mutation	SNP	C	TCGA-2G-AAFL-01A-21D-A42Y-10	26949683	99439617	36095130	26	694											
SLC25A28	81894	broad.mit.edu	37	chr10	101370677	101370677	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaactcatacacagaccatgCgatggctgtggaggggatct	13	9	2	1	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	SLC25A28,NS,carcinoma,0,1	SLC25A28	NM_031212	exon4	c.G1024A	p.A342T	ACCATGCGATGGC		118	4	0.03	131	2	0.0152671756		34	1	131	0	0				T	101370677	C	T	101370677	3	4	11	1	0	0	0	0	1	0	0	0	14545	768	27	1	74	1	SLC25A28	10	101370677	Missense_Mutation	SNP	C	TCGA-2G-AAFL-01A-21D-A42Y-10	1931060	101370677	34164070	27	695											
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	1271589	1271589	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acacccacagtcaccagctcCaaagccactccctcctccag	4	21	1	0	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_002458	exon31	c.C13479T	p.S4493S	CAGCTCCAAAGCC		366	42	0.11	343	0	0				0	0					T	1271589	C	T	1271589	2	4	11	1	0	0	0	0	0	0	0	1	10026	581	21	3		3	MUC5B	11	1271589	Silent	SNP	C	TCGA-2G-AAFL-01A-21D-A42Y-10		1271589	133734927	28	696											
GTF2H1	2965	mdanderson.org	37	chr11	18354753	18354753	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagatagatttacaatcagCcatatgtatgcagatattaa	6	5	1	3	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_001142307	exon3	c.C132A	p.S44R	AATCAGCCATATG		32	3	0.09	57	0	0				19	0	0				A	18354753	C	A	18354753	3	1	11	1	0	0	0	0	1	0	0	0	6900	738	26	2	134	2	GTF2H1	11	18354753	Missense_Mutation	SNP	C	TCGA-2G-AAFL-01A-21D-A42Y-10	17083164	18354753	116651763	29	697											
TMEM151A	256472	mdanderson.org	37	chr11	66061946	66061946	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtcctggggcccgaggccGccttggcccggggagccggg	20	14	0	0	rs202127682	bycluster;by1000genomes	TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_153266	exon2	c.G229A	p.A77T	GAGGCCGCCTTGG		55	4	0.07	69	0	0	0.002			0	0					A	66061946	G	A	66061946	3	1	11	1	0	0	0	0	1	0	0	0	16129	1087	38	1	235	1	TMEM151A	11	66061946	Missense_Mutation	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10	47707193	66061946	68944570	30	698											
LRP5	4041	bcgsc.ca	37	chr11	68216457	68216457	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacctgtcggcggaggacagCtgcccgccctcgcccgccac	12	19	0	0	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	LRP5	NM_002335	exon23	c.C4767T	p.S1589S	GGACAGCTGCCCG		32	4	0.13	24	0	0		136		99	0	0				T	68216457	C	T	68216457	2	4	11	1	0	0	0	0	0	0	0	1	9004	796	28	2		2	LRP5	11	68216457	Silent	SNP	C	TCGA-2G-AAFL-01A-21D-A42Y-10	2154511	68216457	66790059	31	699											
SYTL2	54843	broad.mit.edu	37	chr11	85445575	85445575	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccctctcggagcccctctcGctttcagggagtctgtcctt	9	16	4	0	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	SYTL2_ENST00000316356,colon,carcinoma,+1,1	SYTL2	NM_001162953	exon6	c.C797T	p.A266V	CCTCTCGCTTTCA		157	5	0.03	178	0	0		231	1	0	0					A	85445575	G	A	85445575	3	1	11	1	0	0	0	0	1	0	0	0	15539	1087	38	1	4543	1	SYTL2	11	85445575	Missense_Mutation	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10	17229118	85445575	49560941	32	700											
ME3	10873	mdanderson.org	37	chr11	86382933	86382933	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcgcgggagggcgccgcaGgcccggcccggccagggagc	20	16	0	0	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_001014811	exon1	c.C54A	p.A18A	GCCGCAGGCCCGG		27	2	0.07	51	0	0				1	0	0				T	86382933	G	T	86382933	2	4	11	1	0	0	0	0	0	0	0	1	9468	987	35	3		3	ME3	11	86382933	Silent	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10	937358	86382933	48623583	33	701											
TULP3	7289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	3040319	3040319	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcaaggtgtcacagtaagAtgtcggataatccgggataa	11	8	2	1	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_003324	exon6	c.A609C	p.R203S	AGTAAGATGTCGG		189	22	0.12	103	0	0				11	0	0				C	3040319	A	C	3040319	3	2	11	1	0	0	0	0	1	0	0	0	16836	330	12	4	631	4	TULP3	12	3040319	Missense_Mutation	SNP	A	TCGA-2G-AAFL-01A-21D-A42Y-10		3040319	130811576	34	702											
SUPT16H	11198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	21830430	21830430	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccagagcactgcctgggcaAtaaaagttgattcgcaagta	10	10	0	2	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_007192	exon15	c.T1719C	p.Y573Y	TGGGCAATAAAAG		89	6	0.07	82	0	0				35	7	0.2				G	21830430	A	G	21830430	2	3	11	1	0	0	0	0	0	0	0	1	15451	108	4	4		4	SUPT16H	14	21830430	Silent	SNP	A	TCGA-2G-AAFL-01A-21D-A42Y-10		21830430	85519110	35	703											
WDR25	79446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	100847625	100847625	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctctgtggacgagccatGttccagccagccacatgccc	9	16	1	0	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_001161476	exon2	c.G364A	p.V122I	AGCCATGTTCCAG		145	17	0.12	115	0	0				11	4	0.36				A	100847625	G	A	100847625	3	1	11	1	0	0	0	0	1	0	0	0	17341	1377	48	3	366	3	WDR25	14	100847625	Missense_Mutation	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10	79017195	100847625	6501915	36	704											
ALPK3	57538	hgsc.bcm.edu	37	chr15	85401530	85401530	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	accacacctgaagaaagggaGagccccacggtttccccccg	10	16	0	3	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_020778	exon6	c.G4167A	p.E1389E	AAGGGAGAGCCCC		23	5	0.22	25	0	0				0	0					A	85401530	G	A	85401530	2	1	11	1	0	0	0	0	0	0	0	1	542	933	33	3		3	ALPK3	15	85401530	Silent	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10		85401530	17129862	37	705											
NPRL3	8131	mdanderson.org	37	chr16	150464	150464	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcagaagctcacctccaGccagctgttgatgtgaagcc	11	13	1	3	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	.	.	.	.	CCTCCAGCCAGCT		45	3	0.07	46	0	0				37	0	0				T	150464	G	T	150464	3	4	11	1	0	0	0	0	1	0	0	0	10645	962	34	2	1063	2	NPRL3	16	150464	Missense_Mutation	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10		150464	90204289	38	706											
CACNA1H	8912	mdanderson.org	37	chr16	1252375	1252375	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggccggtggaccgccagGcaccggggggcacggcccgt	20	14	0	0	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_021098	exon9	c.G1925T	p.G642V	CGCCAGGCACCGG		45	3	0.07	43	0	0				0	0					T	1252375	G	T	1252375	3	4	11	1	0	0	0	0	1	0	0	0	2563	1203	42	2	1955	2	CACNA1H	16	1252375	Missense_Mutation	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10	1101911	1252375	89102378	39	707											
ROGDI	79641	mdanderson.org	37	chr16	4848588	4848588	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	accgtgaggccgctggcggcGatctcggggagggtgagggt	21	9	1	2	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_024589	exon7	c.C513A	p.I171I	GGCGGCGATCTCG		19	3	0.16	15	0	0				87	0	0				T	4848588	G	T	4848588	2	4	11	1	0	0	0	0	0	0	0	1	13571	1048	37	1		1	ROGDI	16	4848588	Silent	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10	3596213	4848588	85506165	40	708											
VMO1	284013	mdanderson.org	37	chr17	4689636	4689636	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcagcttggctcctgcGccccgctccatcctgtagcg	12	17	0	0	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_001144939	exon1	c.C12A	p.G4G	TCCTGCGCCCCGC		11	3	0.27	24	0	0				3	0	0				T	4689636	G	T	4689636	2	4	11	1	0	0	0	0	0	0	0	1	17236	1074	38	1		1	VMO1	17	4689636	Silent	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10		4689636	76505574	41	709											
DNAH9	1770	mdanderson.org	37	chr17	11502133	11502133	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgctttttttccttcgcacCgggcccgagcctccagggcc	11	17	0	0	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	DNAH9,NS,carcinoma,+2,1	DNAH9	NM_001372	exon1	c.C318T	p.T106T	TCGCACCGGGCCC		15	2	0.13	16	0	0		2	1	1	0	0				T	11502133	C	T	11502133	2	4	11	1	0	0	0	0	0	0	0	1	4635	639	23	1		1	DNAH9	17	11502133	Silent	SNP	C	TCGA-2G-AAFL-01A-21D-A42Y-10	6812497	11502133	69693077	42	710											
SREBF1	6720	broad.mit.edu	37	chr17	17740045	17740045	+	Frame_Shift_Del	DEL	G	G	-													gcccgccctgacgcaccttcGatgtcggtcagcagcgccgc					novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	SREBF1	NM_004176	exon1	c.87delC	p.I29fs	ACCTTCGATGTCG		6	2	0.33	8	0	0		47		9	0	0				-	17740045	G	-	17740045	7	5	11	1	0	1	0	1	0	0	0	0	15196	1048	37	0	3526	0	SREBF1	17	17740045	Frame_Shift_Del	DEL	G	TCGA-2G-AAFL-01A-21D-A42Y-10	6237912	17740045	63455165	43	711	1	2									
SREBF1	6720	broad.mit.edu	37	chr17	17740047	17740047	+	Frame_Shift_Del	DEL	T	T	-													ccgccctgacgcaccttcgaTgtcggtcagcagcgccgcgt					novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	SREBF1	NM_004176	exon1	c.85delA	p.I29fs	CTTCGATGTCGGT		6	2	0.33	8	0	0		47		9	0	0				-	17740047	T	-	17740047	7	5	11	1	0	1	0	1	0	0	0	0	15196	1464	51	0	3528	0	SREBF1	17	17740047	Frame_Shift_Del	DEL	T	TCGA-2G-AAFL-01A-21D-A42Y-10	2	17740047	63455163	44	712	1	2									
MYO15A	51168	broad.mit.edu	37	chr17	18023051	18023051	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gctacggctacgacgattacGaacccccatatgcgcccccg	9	17	0	0	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	MYO15A,NS,carcinoma,0,1	MYO15A	NM_016239	exon2	c.G937T	p.E313X	GATTACGAACCCC		54	3	0.06	56	0	0		268	1	0	0					T	18023051	G	T	18023051	4	4	11	1	0	0	0	0	0	1	0	0	10110	1059	37	1	939	1	MYO15A	17	18023051	Nonsense_Mutation	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10	283004	18023051	63172159	45	713											
KRT23	25984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	39092824	39092824	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccatggaaggaggccgagGgggtctggctgaagctgtgt	19	8	1	1	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_015515	exon2	c.C32A	p.P11H	GCCGAGGGGGTCT		201	22	0.11	237	0	0				4	1	0.25				T	39092824	G	T	39092824	3	4	11	1	0	0	0	0	1	0	0	0	8502	1232	43	3	1268	3	KRT23	17	39092824	Missense_Mutation	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10	21069773	39092824	42102386	46	714											
LRRC37A	9884	broad.mit.edu	37	chr17	44409918	44409918	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgtgtttttttttttagCtcaaaaaagaagttccagga	8	4	1	1	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	LRRC37A	NM_014834	exon10	c.C4705T	p.L1569F	TTTTAGCTCAAAA		302	13	0.04	223	3	0.0134529148		19		72	0	0				T	44409918	C	T	44409918	5	4	11	1	0	0	0	0	0	0	1	0	9035	811	28	2	4743	2	LRRC37A	17	44409918	Splice_Site	SNP	C	TCGA-2G-AAFL-01A-21D-A42Y-10	5317094	44409918	36785292	47	715											
HOXB4	3214	mdanderson.org	37	chr17	46655235	46655235	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acgcactcacccgtgctcacGtgaactttgcgcatccaggg	10	15	2	1	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_024015	exon1	c.C447T	p.H149H	GCTCACGTGAACT		44	3	0.07	32	0	0				0	0					A	46655235	G	A	46655235	2	1	11	1	0	0	0	0	0	0	0	1	7343	1136	40	1		1	HOXB4	17	46655235	Silent	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10	2245317	46655235	34539975	48	716											
SLC39A11	201266	mdanderson.org	37	chr17	70645040	70645040	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatgggctcagccagcacCacggcaaaggcaccaaagac	12	13	1	1	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_001159770	exon9	c.G852T	p.V284V	CAGCACCACGGCA		83	5	0.06	55	0	0				22	0	0				A	70645040	C	A	70645040	2	1	11	1	0	0	0	0	0	0	0	1	14668	581	21	3		3	SLC39A11	17	70645040	Silent	SNP	C	TCGA-2G-AAFL-01A-21D-A42Y-10	23989805	70645040	10550170	49	717											
FASN	2194	broad.mit.edu	37	chr17	80041214	80041214	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cggcctgcacaagcgcccacAcctcccgccagtcagcactg	9	20	1	0	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	FASN	NM_004104	exon32	c.T5429G	p.V1810G	GCCCACACCTCCC		90	30	0.33	82	18	0.2195121951		154		112	9	0.08				C	80041214	A	C	80041214	3	2	11	1	0	0	0	0	1	0	0	0	5715	159	6	4	2154	4	FASN	17	80041214	Missense_Mutation	SNP	A	TCGA-2G-AAFL-01A-21D-A42Y-10	9396174	80041214	1153996	50	718											
MAP1S	55201	mdanderson.org	37	chr19	17837105	17837105	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccccggcctcaacagcctGctgcggcgcaaactggcgga	12	17	1	0	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_018174	exon5	c.G912A	p.L304L	CAGCCTGCTGCGG		39	3	0.08	31	0	0				71	0	0				A	17837105	G	A	17837105	2	1	11	1	0	0	0	0	0	0	0	1	9283	1306	46	2		2	MAP1S	19	17837105	Silent	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10		17837105	41291878	51	719											
TIMM50	92609	mdanderson.org	37	chr19	39971461	39971461	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggggcgggcgaagagggagCgagtgggcggggccgcgtgg	26	8	0	1	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_001001563	exon1	c.C277T	p.R93X	AGGGAGCGAGTGG		28	2	0.07	44	0	0				0	0					T	39971461	C	T	39971461	4	4	11	1	0	0	0	0	0	1	0	0	15972	760	27	1	279	1	TIMM50	19	39971461	Nonsense_Mutation	SNP	C	TCGA-2G-AAFL-01A-21D-A42Y-10	22134356	39971461	19157522	52	720											
ERCC2	2068	broad.mit.edu	37	chr19	45855573	45855573	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaggtgctcctggatccagCggggcagcttcccccgcttg	14	14	0	1	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	ERCC2	NM_000400	exon22	c.G2084A	p.R695H	ATCCAGCGGGGCA		69	4	0.06	85	1	0.0117647059		78		124	0	0				T	45855573	C	T	45855573	3	4	11	1	0	0	0	0	1	0	0	0	5241	768	27	1	206	1	ERCC2	19	45855573	Missense_Mutation	SNP	C	TCGA-2G-AAFL-01A-21D-A42Y-10	5884112	45855573	13273410	53	721											
ITSN1	6453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	35144498	35144498	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggagcgggcggagcaggaGaggaaggagcgtgagcgcca	21	8	0	2	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_001001132	exon12	c.G1176A	p.E392E	GCAGGAGAGGAAG		165	17	0.1	121	0	0				10	3	0.3				A	35144498	G	A	35144498	2	1	11	1	0	0	0	0	0	0	0	1	7969	933	33	3		3	ITSN1	21	35144498	Silent	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10		35144498	12985397	54	722											
IL17REL	400935	mdanderson.org	37	chr22	50439249	50439249	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgacactgcgtctcctgGgtgtccaggctcatggcaca	11	14	3	1	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_001001694	exon5	c.C153A	p.T51T	CTCCTGGGTGTCC		29	3	0.1	37	0	0				0	0					T	50439249	G	T	50439249	2	4	11	1	0	0	0	0	0	0	0	1	7687	1219	43	3		3	IL17REL	22	50439249	Silent	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10		50439249	865317	55	723											
HUWE1	10075	broad.mit.edu	37	chrX	53622246	53622246	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatcgcgcggcaggtgtcGgtgctgtagtggtgctggca	18	8	0	1	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	HUWE1	NM_031407	exon30	c.C3281A	p.P1094Q	GGTGTCGGTGCTG		101	4	0.04	97	0	0		724		1	0	0				T	53622246	G	T	53622246	3	4	11	1	0	0	0	0	1	0	0	0	7504	1116	39	1	10063	1	HUWE1	23	53622246	Missense_Mutation	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10		53622246	101648314	56	724											
CHM	1121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	85218961	85218961	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatcctccgtaggcaggaaGgcagaatctgcagcttctgt	11	11	3	1	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_000390	exon5	c.C411T	p.A137A	CAGGAAGGCAGAA		125	33	0.26	101	0	0				1	0	0				A	85218961	G	A	85218961	2	1	11	1	0	0	0	0	0	0	0	1	3372	987	35	3		3	CHM	23	85218961	Silent	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10	31596715	85218961	70051599	57	725											
RNF113A	7737	mdanderson.org	37	chrX	119005138	119005138	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atagatcttgtcatcctcctTgcccctcagctcctcctgga	6	16	3	1	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	.	NM_006978	exon1	c.A439G	p.K147E	CCTCCTTGCCCCT		42	3	0.07	42	0	0				49	0	0				C	119005138	T	C	119005138	3	2	11	1	0	0	0	0	1	0	0	0	13478	1821	63	4	596	4	RNF113A	23	119005138	Missense_Mutation	SNP	T	TCGA-2G-AAFL-01A-21D-A42Y-10	33786177	119005138	36265422	58	726											
FLNA	0	broad.mit.edu	37	chrX	153595838	153595838	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggcttcagcttggccttGgggaactgggacaggtaggt	16	9	1	0	novel		TCGA-2G-AAFL-01A-21D-A42Y-10	TCGA-2G-AAFL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	333fc09a-ce23-4f10-a8b7-86fa54bd8184	a4aa42af-abd7-409c-a27c-12fbfe1801fd	.	FLNA	NM_001456	exon5	c.C795A	p.P265P	GGCCTTGGGGAAC		70	4	0.06	70	0	0		373		11	0	0				T	153595838	G	T	153595838	2	4	11	1	0	0	0	0	0	0	0	1	5965	1335	47	3		3	FLNA	23	153595838	Silent	SNP	G	TCGA-2G-AAFL-01A-21D-A42Y-10	34590700	153595838	1674722	59	727											
CLCNKB	1188	broad.mit.edu	37	chr1	16383402	16383402	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacctgacaaatccgccagcCccaaagtgagccggcccagc	9	17	0	2	rs6698427	bycluster	TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	CLCNKB	NM_000085	exon20	c.C2055T	p.A685A	GCCAGCCCCAAAG		612	9	0.01	499	1	0.002004008		50		6	0	0				T	16383402	C	T	16383402	2	4	12	1	0	0	0	0	0	0	0	1	3493	610	22	3		3	CLCNKB	1	16383402	Silent	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10		16383402	232867219	1	728											
SSBP3	23648	broad.mit.edu	37	chr1	54871665	54871665	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgagggcaccgccgagcctTtgcctttggcaaacatggtt	12	13	0	0	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	SSBP3	NM_001009955	exon1	c.A17G	p.K6R	GAGCCTTTGCCTT		142	7	0.05	119	1	0.0084033613		65		15	0	0				C	54871665	T	C	54871665	3	2	12	1	0	0	0	0	1	0	0	0	15236	1841	64	4	1221	4	SSBP3	1	54871665	Missense_Mutation	SNP	T	TCGA-2G-AAFM-01A-11D-A42Y-10	38488263	54871665	194378956	2	729											
DIRAS3	9077	hgsc.bcm.edu	37	chr1	68512245	68512245	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgaaatgagtccacgtttTctacacgctacaggatagga	10	8	1	2	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	.	.	.	.	ACGTTTTCTACAC		65	18	0.28	61	0	0				13	8	0.62				G	68512245	T	G	68512245	1	3	12	0	1	0	0	0	0	0	0	0	4560	1798	62	4		4	DIRAS3	1	68512245	RNA	SNP	T	TCGA-2G-AAFM-01A-11D-A42Y-10	13640580	68512245	180738376	3	730											
SELL	6402	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	169680646	169680646	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaaggctcaccatggctttGcttggtccttctctagttct	9	11	3	0	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	SELL	NM_000655	exon1	c.C33G	p.S11R	GGCTTTGCTTGGT		78	5	0.06	76	0	0		43		6	0	0				C	169680646	G	C	169680646	3	2	12	1	0	0	0	0	1	0	0	0	14069	1310	46	5	1160	5	SELL	1	169680646	Missense_Mutation	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10	101168401	169680646	79569975	4	731											
ACBD3	64746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	226334321	226334321	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaacatttttatctagtaTaatagactctgtagtagact	5	6	2	2	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_022735	exon8	c.A1577G	p.Y526C	CTAGTATAATAGA		124	16	0.13	101	0	0				8	1	0.13				C	226334321	T	C	226334321	3	2	12	1	0	0	0	0	1	0	0	0	123	1406	49	4	13	4	ACBD3	1	226334321	Missense_Mutation	SNP	T	TCGA-2G-AAFM-01A-11D-A42Y-10	56653675	226334321	22916300	5	732											
EXOC8	149371	broad.mit.edu	37	chr1	231472713	231472713	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cattttcggcctggaaaataCggctctcggggaacataagc	11	10	1	0	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	EXOC8	NM_175876	exon1	c.G779A	p.R260H	AAAATACGGCTCT		162	5	0.03	135	0	0		42		0	0					T	231472713	C	T	231472713	3	4	12	1	0	0	0	0	1	0	0	0	5338	536	19	1	1402	1	EXOC8	1	231472713	Missense_Mutation	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10	5138392	231472713	17777908	6	733											
ALK	238	broad.mit.edu	37	chr2	29449808	29449808	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caatgcaggagacgccatccTcagccagcaccgtcccgtgg	11	16	1	1	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	ALK,left_upper_lobe,carcinoma,+1,1	ALK	NM_004304	exon18	c.A3047G	p.E1016G	CCATCCTCAGCCA		79	3	0.04	84	0	0		533	1	0	0					C	29449808	T	C	29449808	3	2	12	1	0	0	0	0	1	0	0	0	521	1551	54	4	1863	4	ALK	2	29449808	Missense_Mutation	SNP	T	TCGA-2G-AAFM-01A-11D-A42Y-10		29449808	213749565	7	734											
RQCD1	9125	broad.mit.edu;mdanderson.org	37	chr2	219458920	219458920	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgacaccaccacgaaacGctggcttgcacaactggtga	10	12	0	3	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	RQCD1	NM_001271634	exon9	c.G917T	p.R306L	CGAAACGCTGGCT		141	5	0.04	136	0	0		32		40	0	0				T	219458920	G	T	219458920	3	4	12	1	0	0	0	0	1	0	0	0	13721	1087	38	1	851	1	RQCD1	2	219458920	Missense_Mutation	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10	190009112	219458920	23740453	8	735											
USP40	55230	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	234394589	234394589	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ataggtcctctcaccagggaTgcgcacctgtgtcctcagca	10	14	2	0	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_018218	exon28	c.A3265G	p.I1089V	CAGGGATGCGCAC		114	11	0.1	140	0	0				1	0	0				C	234394589	T	C	234394589	3	2	12	1	0	0	0	0	1	0	0	0	17131	1464	51	4	494	4	USP40	2	234394589	Missense_Mutation	SNP	T	TCGA-2G-AAFM-01A-11D-A42Y-10	14935669	234394589	8804784	9	736											
RBM44	375316	mdanderson.org	37	chr2	238738115	238738115	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacggcagctgggttctgaGcaagacagtgaggttttccc	13	11	1	3	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001080504	exon13	c.G2859T	p.E953D	TTCTGAGCAAGAC		126	5	0.04	155	0	0				0	0					T	238738115	G	T	238738115	3	4	12	1	0	0	0	0	1	0	0	0	13189	962	34	2	2905	2	RBM44	2	238738115	Missense_Mutation	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10	4343526	238738115	4461258	10	737											
SLC4A7	9497	mdanderson.org	37	chr3	27493948	27493948	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aacttggtgttcacagttgaGctagttttgccaagatccac	9	9	1	2	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001258379	exon2	c.C90A	p.S30R	AGTTGAGCTAGTT		46	3	0.07	50	0	0				0	0					T	27493948	G	T	27493948	3	4	12	1	0	0	0	0	1	0	0	0	14712	962	34	2	3665	2	SLC4A7	3	27493948	Missense_Mutation	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10		27493948	170528482	11	738											
ACTR8	93973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	53910015	53910015	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccatcctccacacagcataCacttgtcttctggtccccaa	4	18	2	0	rs375966881		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_022899	exon7	c.G871A	p.V291I	AGCATACACTTGT		159	24	0.15	192	0	0				25	9	0.36				T	53910015	C	T	53910015	3	4	12	1	0	0	0	0	1	0	0	0	216	478	17	3	1031	3	ACTR8	3	53910015	Missense_Mutation	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10	26416067	53910015	144112415	12	739											
LEKR1	389170	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	156763256	156763256	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaagtttaccattctcacCgtgttccctcagcaagggca	9	12	2	0	rs150686576	alternate_allele	TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	LEKR1	NM_001004316	exon13	c.C1796A	p.P599Q	TCTCACCGTGTTC		146	14	0.1	162	1	0.0061728395		66		0	0					A	156763256	C	A	156763256	3	1	12	1	0	0	0	0	1	0	0	0	8755	652	23	1	1842	1	LEKR1	3	156763256	Missense_Mutation	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10	102853241	156763256	41259174	13	740											
LYAR	55646	mdanderson.org	37	chr4	4285380	4285380	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcagtcaatgcaagaaagGcattcacagtttctgcaaac	8	11	3	1	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001145725	exon3	c.C90A	p.C30X	AGAAAGGCATTCA		29	3	0.1	42	0	0				103	0	0				T	4285380	G	T	4285380	4	4	12	1	0	0	0	0	0	1	0	0	9148	1195	42	2	1081	2	LYAR	4	4285380	Nonsense_Mutation	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10		4285380	186868896	14	741											
BMP2K	55589	broad.mit.edu	37	chr4	79792085	79792085	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcatcgtcatcctcaccaGcagcagcagcagcagcagca	9	16	2	0	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	BMP2K_ENST00000502871,NS,carcinoma,0,7	BMP2K	NM_017593	exon11	c.G1380C	p.Q460H	TCACCAGCAGCAG		47	4	0.09	57	0	0		169	7	3	0	0				C	79792085	G	C	79792085	3	2	12	1	0	0	0	0	1	0	0	0	1459	962	34	5	1422	5	BMP2K	4	79792085	Missense_Mutation	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10	75506705	79792085	111362191	15	742											
TRIM23	373	broad.mit.edu	37	chr5	64905170	64905170	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagccaaatcaatttttcaCgaacatgagcatcaacaaca	5	10	3	2	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	TRIM23	NM_033228	exon6	c.G944A	p.R315H	TTTTCACGAACAT		227	6	0.03	265	0	0		73		0	0					T	64905170	C	T	64905170	3	4	12	1	0	0	0	0	1	0	0	0	16557	536	19	1	871	1	TRIM23	5	64905170	Missense_Mutation	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10		64905170	116010090	16	743											
PCDHB4	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140501959	140501959	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tattgatccaggacataaatGatcactctccaatattccct	4	11	2	2	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	PCDHB4	NM_018938	exon1	c.G379T	p.D127Y	ATAAATGATCACT		126	27	0.21	127	1	0.0078740157		177		0	0					T	140501959	G	T	140501959	3	4	12	1	0	0	0	0	1	0	0	0	11590	1290	45	3	381	3	PCDHB4	5	140501959	Missense_Mutation	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10	75596789	140501959	40413301	17	744											
FAM114A2	10827	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	153381928	153381928	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtcagttcagccaggctcCggattgcaaacgcatggata	11	11	2	0	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_018691	exon11	c.G1139A	p.R380Q	AGGCTCCGGATTG		174	9	0.05	163	0	0				14	1	0.07				T	153381928	C	T	153381928	3	4	12	1	0	0	0	0	1	0	0	0	5435	652	23	1	394	1	FAM114A2	5	153381928	Missense_Mutation	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10	12879969	153381928	27533332	18	745											
PRKAR1B	5575	mdanderson.org	37	chr7	624155	624155	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agccactgacctaggatggaGaccttgctgaggaactcctc	11	12	0	3	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_002735	exon8	c.C759A	p.V253V	GATGGAGACCTTG		43	3	0.07	54	0	0				208	0	0				T	624155	G	T	624155	2	4	12	1	0	0	0	0	0	0	0	1	12555	929	33	3		3	PRKAR1B	7	624155	Silent	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10		624155	158514508	19	746											
CARD11	84433	mdanderson.org	37	chr7	2962882	2962882	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggtgagctgggaggtgaGgctgtcgccattcagcgtcg	18	9	1	2	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_032415	exon16	c.C2026A	p.L676I	AGGTGAGGCTGTC		31	3	0.1	31	0	0				18	0	0				T	2962882	G	T	2962882	3	4	12	1	0	0	0	0	1	0	0	0	2663	1000	35	3	1478	3	CARD11	7	2962882	Missense_Mutation	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10	2338727	2962882	156175781	20	747											
MPP6	51678	mdanderson.org	37	chr7	24705705	24705705	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtatctcacaaccagaaatGcaggtaggttttaaatactt	7	7	1	1	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_016447	exon9	c.G949T	p.A317S	AGAAATGCAGGTA		36	3	0.08	45	0	0				1	0	0				T	24705705	G	T	24705705	3	4	12	1	0	0	0	0	1	0	0	0	9786	1319	46	2	975	2	MPP6	7	24705705	Missense_Mutation	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10	21742823	24705705	134432958	21	748											
TRRAP	8295	broad.mit.edu	37	chr7	98601961	98601961	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggttcttgagcaatttctcGgcacagacagctgaagtgga	12	9	2	3	rs377353131		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	TRRAP_ENST00000359863,NS,carcinoma,+1,2	TRRAP	NM_001244580	exon67	c.G10416A	p.S3472S	TTTCTCGGCACAG		196	5	0.03	145	0	0		863	2	21	1	0.05	rescued with RNA-seq			A	98601961	G	A	98601961	2	1	12	1	0	0	0	0	0	0	0	1	16661	1103	39	1		1	TRRAP	7	98601961	Silent	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10	73896256	98601961	60536702	22	749											
TMEM55A	55529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	92033608	92033608	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcgtctggactggcaatgGctgtatatggaggtgggagc	18	6	1	0	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_018710	exon2	c.C131A	p.A44D	GCAATGGCTGTAT		56	9	0.16	49	0	0				5	0	0				T	92033608	G	T	92033608	3	4	12	1	0	0	0	0	1	0	0	0	16240	1203	42	2	666	2	TMEM55A	8	92033608	Missense_Mutation	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10		92033608	54330414	23	750											
PLEC	5339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr8	144991455	144991455	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggagatggtgatctcctcCcactcgcactcctgctcgga	11	14	1	2	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_201380	exon32	c.G12945T	p.W4315C	CTCCTCCCACTCG		33	4	0.12	43	0	0				147	36	0.24				A	144991455	C	A	144991455	3	1	12	1	0	0	0	0	1	0	0	0	12099	624	22	3	1113	3	PLEC	8	144991455	Missense_Mutation	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10	52957847	144991455	1372567	24	751											
GDF10	2662	mdanderson.org	37	chr10	48429183	48429183	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcataggggctgggccgggGcacccccgggtccctctcct	15	17	1	0	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_004962	exon2	c.C703T	p.P235S	GCCGGGGCACCCC		46	3	0.07	44	0	0				0	0					A	48429183	G	A	48429183	3	1	12	1	0	0	0	0	1	0	0	0	6352	1203	42	2	741	2	GDF10	10	48429183	Missense_Mutation	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10		48429183	87105564	25	752											
MUC6	4588	bcgsc.ca	37	chr11	1017556	1017556	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggaagtgtgtgaatgtaGggatgtagaggttttggccg	19	2	0	2	rs77815355		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	MUC6	NM_005961	exon31	c.C5245T	p.L1749L	AATGTAGGGATGT		131	11	0.08	128	2	0.015625		408		0	0					A	1017556	G	A	1017556	2	1	12	1	0	0	0	0	0	0	0	1	10027	991	35	3		3	MUC6	11	1017556	Silent	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10		1017556	133988960	26	753											
UNC93B1	81622	mdanderson.org	37	chr11	67770593	67770593	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	agccccatgttgccatacttCacctcgcggtaggtctcgtc	9	15	2	0	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	.	.	.	.	ATACTTCACCTCG		51	3	0.06	51	0	0				21	0	0				A	67770593	C	A	67770593	2	1	12	1	0	0	0	0	0	0	0	1	17056	813	29	3		3	UNC93B1	11	67770593	Silent	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10	66753037	67770593	67235923	27	754											
PPME1	51400	mdanderson.org	37	chr11	73936285	73936285	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaatcctgaagatctgtctGcagaaacaatggcaaagtaa	9	7	2	4	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_016147	exon5	c.G382T	p.A128S	CTGTCTGCAGAAA		51	3	0.06	64	0	0				7	0	0				T	73936285	G	T	73936285	3	4	12	1	0	0	0	0	1	0	0	0	12395	1319	46	2	400	2	PPME1	11	73936285	Missense_Mutation	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10	6165692	73936285	61070231	28	755											
NCAM1	4684	mdanderson.org	37	chr11	113105859	113105859	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgggtgagatcagcgcgGcctccgagttcaagacgcag	16	11	2	2	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001242607	exon16	c.G1876T	p.A626S	AGCGCGGCCTCCG		45	3	0.07	74	0	0				1	0	0				T	113105859	G	T	113105859	3	4	12	1	0	0	0	0	1	0	0	0	10248	1203	42	2	1853	2	NCAM1	11	113105859	Missense_Mutation	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10	39169574	113105859	21900657	29	756			1	4		2	2	28	N	G_C	5.930681e-05
NCAM1	4684	mdanderson.org	37	chr11	113105886	113105886	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agttcaagacgcagccagtcCgtaagtaaagccagctgccc	10	13	1	1	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001242607	exon16	c.C1903T	p.P635S	CCAGTCCGTAAGT		42	3	0.07	65	0	0				1	0	0				T	113105886	C	T	113105886	3	4	12	1	0	0	0	0	1	0	0	0	10248	666	23	1	1880	1	NCAM1	11	113105886	Missense_Mutation	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10	27	113105886	21900630	30	757			1	4		2	2	28	N	G_C	5.930681e-05
GRIK4	2900	broad.mit.edu	37	chr11	120856677	120856677	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgtcaggacagtatccAcccccgccggcggcgcgccg	13	18	1	0	rs372805470		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	GRIK4	NM_014619	exon19	c.A2579C	p.H860P	GTATCCACCCCCG		61	15	0.25	51	11	0.2156862745		149		2	1	0.5				C	120856677	A	C	120856677	3	2	12	1	0	0	0	0	1	0	0	0	6816	159	6	4	2653	4	GRIK4	11	120856677	Missense_Mutation	SNP	A	TCGA-2G-AAFM-01A-11D-A42Y-10	7750791	120856677	14149839	31	758											
PDE3A	0	broad.mit.edu	37	chr12	20522114	20522115	+	RNA	INS	-	-	GCGT													cgagggtggaattgggaagaINSgcgtgcgtgcgtgtgtgtgt					rs138187101	bycluster;by1000genomes	TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	PDE3A	.	.	.	.	GGGAAGAGCGTGC		33	7	0.21	16	0	0		184		0	0					GCGT	20522115	-	GCGT	20522114	6	5	12	0	1	1	1	0	0	0	0	0	11683	319	11	0		0	PDE3A	12	20522114	RNA	INS	-	TCGA-2G-AAFM-01A-11D-A42Y-10		20522114	113329781	32	759											
BAZ2A	11176	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	56995665	56995665	+	Frame_Shift_Del	DEL	G	G	-													aggggagccttcttgctccaGgaaccccttatgggactgaa					novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	BAZ2A	NM_013449	exon20	c.3743delT	p.L1248fs	GCTCCAGGAACCC		71	13	0.18	81	0	0		263		6	0	0				-	56995665	G	-	56995665	7	5	12	1	0	1	0	1	0	0	0	0	1329	991	35	0	2015	0	BAZ2A	12	56995665	Frame_Shift_Del	DEL	G	TCGA-2G-AAFM-01A-11D-A42Y-10	36473551	56995665	76856230	33	760											
CLIP1	6249	hgsc.bcm.edu	37	chr12	122862115	122862115	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttgaaggggtggagggggAggaagacaccatgctggccg	20	6	0	2	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_002956	exon3	c.T478C	p.S160P	AGGGGGAGGAAGA		115	5	0.04	125	0	0				4	0	0				G	122862115	A	G	122862115	3	3	12	1	0	0	0	0	1	0	0	0	3555	304	11	4	3897	4	CLIP1	12	122862115	Missense_Mutation	SNP	A	TCGA-2G-AAFM-01A-11D-A42Y-10	65866450	122862115	10989780	34	761											
DDX51	317781	broad.mit.edu	37	chr12	132625414	132625414	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcatacttccccgaatcccCgtccccatctgtatcttcca	5	18	2	0	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	DDX51	NM_175066	exon9	c.G1402A	p.G468R	AATCCCCGTCCCC		113	4	0.04	115	0	0		33		73	6	0.08	rescued with RNA-seq			T	132625414	C	T	132625414	3	4	12	1	0	0	0	0	1	0	0	0	4392	652	23	1	626	1	DDX51	12	132625414	Missense_Mutation	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10	9763299	132625414	1226481	35	762											
GRK1	6011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	114321726	114321726	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atttcgggtctttggagaccGtggtggccaactctgccttc	12	11	2	1	rs184639495	bycluster;by1000genomes	TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_002929	exon1	c.G25A	p.V9M	GAGACCGTGGTGG		38	9	0.24	78	0	0	0			0	0					A	114321726	G	A	114321726	3	1	12	1	0	0	0	0	1	0	0	0	6830	1145	40	1	27	1	GRK1	13	114321726	Missense_Mutation	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10		114321726	848152	36	763											
ANG	283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr14	21162164	21162164	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtcaattttccgtcgtccGtaaccagcgggcccctggtc	10	15	1	0	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001097577	exon2	c.G441A	p.P147P	TCGTCCGTAACCA		172	11	0.06	174	0	0				24	0	0				A	21162164	G	A	21162164	2	1	12	1	0	0	0	0	0	0	0	1	603	1132	40	1		1	ANG	14	21162164	Silent	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10		21162164	86187376	37	764											
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	105412772	105412772	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacttcggcctccaccttcgGcgcagacacatccaccgaga	8	18	0	2	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	AHNAK2_ENST00000333244,NS,carcinoma,+2,1	AHNAK2_ENST00000333244	NM_138420	exon7	c.C9016T	p.P3006S	CCTTCGGCGCAGA		209	49	0.23	220	0	0		2	1	0	0					A	105412772	G	A	105412772	3	1	12	1	0	0	0	0	1	0	0	0	412	1203	42	2	8375	2	AHNAK2	14	105412772	Missense_Mutation	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10	84250608	105412772	1936768	38	765											
GOLGA6B	55889	hgsc.bcm.edu	37	chr15	72954932	72954932	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	caaacaggaggagaggctgcGaaaggaggaggagaggctgc	19	6	0	2	rs371637348		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	GOLGA6B,NS,carcinoma,+1,1	GOLGA6B	NM_018652	exon11	c.G1187A	p.R396Q	GGCTGCGAAAGGA		292	12	0.04	277	1	0.0036101083		1	1	0	0					A	72954932	G	A	72954932	3	1	12	1	0	0	0	0	1	0	0	0	6599	1058	37	1	1229	1	GOLGA6B	15	72954932	Missense_Mutation	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10		72954932	29576460	39	766											
PCSK6	5046	mdanderson.org	37	chr15	101922323	101922323	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcttgtccgaggcggccacAcacatgtgctgcgatggcac	12	14	1	0	rs1058260	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	.	.	.	.	GGCCACACACATG		44	3	0.07	85	0	0				5	0	0				T	101922323	A	T	101922323	4	4	12	1	0	0	0	0	0	1	0	0	11650	157	6	5	1880	5	PCSK6	15	101922323	Nonsense_Mutation	SNP	A	TCGA-2G-AAFM-01A-11D-A42Y-10	28967391	101922323	609069	40	767											
NTHL1	4913	mdanderson.org	37	chr16	2097800	2097800	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggctccggctccgggtcaGcatcctcgcgctcaaggcgg	14	16	2	0	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_002528	exon1	c.C49T	p.L17L	GGGTCAGCATCCT		19	2	0.11	32	0	0				117	0	0				A	2097800	G	A	2097800	2	1	12	1	0	0	0	0	0	0	0	1	10745	962	34	2		2	NTHL1	16	2097800	Silent	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10		2097800	88256953	41	768											
ZNF205	7755	mdanderson.org	37	chr16	3170289	3170289	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gatgctgggggcggcggcggCgggggctctggccacacccc	20	14	1	0	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_003456	exon7	c.C1628G	p.A543G	CGGCGGCGGGGGC		12	2	0.17	16	0	0				83	1	0.01				G	3170289	C	G	3170289	3	3	12	1	0	0	0	0	1	0	0	0	17821	768	27	5	1650	5	ZNF205	16	3170289	Missense_Mutation	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10	1072489	3170289	87184464	42	769											
METTL9	51108	mdanderson.org	37	chr16	21611168	21611168	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtacgtgaacatgactagCggcccgggtgggccggcggc	17	12	0	2	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_016025	exon1	c.C114T	p.S38S	GACTAGCGGCCCG		18	2	0.11	14	0	0				9	0	0				T	21611168	C	T	21611168	2	4	12	1	0	0	0	0	0	0	0	1	9557	767	27	1		1	METTL9	16	21611168	Silent	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10	18440879	21611168	68743585	43	770											
EEF2K	29904	mdanderson.org	37	chr16	22269002	22269002	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttcttctactctcatgccTgcaaccggatttgcgagagc	8	13	4	1	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_013302	exon9	c.T940C	p.C314R	CATGCCTGCAACC		52	3	0.06	46	0	0				2	0	0				C	22269002	T	C	22269002	3	2	12	1	0	0	0	0	1	0	0	0	4956	1580	55	4	970	4	EEF2K	16	22269002	Missense_Mutation	SNP	T	TCGA-2G-AAFM-01A-11D-A42Y-10	657834	22269002	68085751	44	771											
HSF4	3299	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	67200242	67200242	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagaacgagatcttgtggCgggaggtggtgacacttcgg	18	7	1	3	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	HSF4	NM_001538	exon7	c.C505T	p.R169W	TTGTGGCGGGAGG		99	6	0.06	125	0	0		33		7	0	0				T	67200242	C	T	67200242	3	4	12	1	0	0	0	0	1	0	0	0	7438	759	27	1	523	1	HSF4	16	67200242	Missense_Mutation	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10	44931240	67200242	23154511	45	772											
DHODH	1723	mdanderson.org	37	chr16	72056285	72056285	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggagagggatggcttgCggagagtgcacaggccggca	19	8	0	2	rs267606768		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	DHODH,colon,carcinoma,0,1	DHODH	NM_001361	exon6	c.C730T	p.R244W	GGCTTGCGGAGAG		38	3	0.08	45	0	0		0	1	40	0	0				T	72056285	C	T	72056285	3	4	12	1	0	0	0	0	1	0	0	0	4512	759	27	1	752	1	DHODH	16	72056285	Missense_Mutation	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10	4856043	72056285	18298468	46	773											
GAS2L2	246176	broad.mit.edu	37	chr17	34077157	34077157	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggcgctggcggcgaggggTcgggcgggggcagggccagc	26	10	0	0	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	GAS2L2,right_upper_lobe,carcinoma,0,2	GAS2L2	NM_139285	exon2	c.A566C	p.D189A	GAGGGGTCGGGCG		93	33	0.35	92	17	0.1847826087		94	2	0	0					G	34077157	T	G	34077157	3	3	12	1	0	0	0	0	1	0	0	0	6286	1667	58	4	2096	4	GAS2L2	17	34077157	Missense_Mutation	SNP	T	TCGA-2G-AAFM-01A-11D-A42Y-10		34077157	47118053	47	774											
UNC13D	201294	mdanderson.org	37	chr17	73832673	73832673	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagaagagactgcagccgGgctggggagtccgagacaga	17	9	0	4	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_199242	exon14	c.C1278A	p.A426A	CAGCCGGGCTGGG		35	3	0.09	35	0	0				2	0	0				T	73832673	G	T	73832673	2	4	12	1	0	0	0	0	0	0	0	1	17046	1219	43	3		3	UNC13D	17	73832673	Silent	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10	39755516	73832673	7362537	48	775											
RNF157	114804	mdanderson.org	37	chr17	74236319	74236319	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccggctcgtcagggccccCatggccgctgcggctgcagc	15	17	1	0	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_052916	exon1	c.G3T	p.M1I	GGCCCCCATGGCC		18	2	0.11	20	0	0				1	0	0				A	74236319	C	A	74236319	3	1	12	1	0	0	0	0	1	0	0	0	13505	594	21	3	2112	3	RNF157	17	74236319	Missense_Mutation	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10	403646	74236319	6958891	49	776											
USP36	57602	mdanderson.org	37	chr17	76799979	76799979	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgacgtccctgggggcttGggggtactggacagcaatgt	16	9	1	1	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_025090	exon16	c.C2298A	p.P766P	GGGCTTGGGGGTA		46	3	0.07	47	0	0				19	0	0				T	76799979	G	T	76799979	2	4	12	1	0	0	0	0	0	0	0	1	17126	1335	47	3		3	USP36	17	76799979	Silent	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10	2563660	76799979	4395231	50	777											
MED16	10025	hgsc.bcm.edu;mdanderson.org	37	chr19	871976	871976	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agagcagggacatgctgtccTgggtatccgaggtggccgta	16	9	0	1	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_005481	exon12	c.A2048T	p.Q683L	CTGTCCTGGGTAT		85	4	0.05	75	0	0				121	0	0				A	871976	T	A	871976	3	1	12	1	0	0	0	0	1	0	0	0	9483	1580	55	5	605	5	MED16	19	871976	Missense_Mutation	SNP	T	TCGA-2G-AAFM-01A-11D-A42Y-10		871976	58257007	51	778											
ZBTB7A	51341	mdanderson.org	37	chr19	4054919	4054919	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggcgctgaggatgtcaccCacgttggctgtgctgacggt	16	11	1	2	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_015898	exon2	c.G312A	p.V104V	GTCACCCACGTTG		37	3	0.08	21	0	0				3	0	0				T	4054919	C	T	4054919	2	4	12	1	0	0	0	0	0	0	0	1	17611	581	21	3		3	ZBTB7A	19	4054919	Silent	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10	3182943	4054919	55074064	52	779											
ANKRD24	170961	mdanderson.org	37	chr19	4216046	4216046	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgagctgcctgaccttccAggtgagcccccacctcccca	10	18	0	3	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_133475	exon16	c.A1269G	p.P423P	CCTTCCAGGTGAG		41	3	0.07	51	0	0				0	0					G	4216046	A	G	4216046	2	3	12	1	0	0	0	0	0	0	0	1	649	202	7	4		4	ANKRD24	19	4216046	Silent	SNP	A	TCGA-2G-AAFM-01A-11D-A42Y-10	161127	4216046	54912937	53	780											
MAP1S	55201	mdanderson.org	37	chr19	17838550	17838550	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cgaggagacgccacccacatCggtcagcgagtccctgccca	11	17	1	1	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_018174	exon5	c.C2357T	p.S786L	CCACATCGGTCAG		38	3	0.08	56	0	0				136	0	0				T	17838550	C	T	17838550	3	4	12	1	0	0	0	0	1	0	0	0	9283	893	31	1	2375	1	MAP1S	19	17838550	Missense_Mutation	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10	13622504	17838550	41290433	54	781											
CAPNS1	826	broad.mit.edu;mdanderson.org	37	chr19	36632054	36632054	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcggcggcggcggcggCggtggtggaggcggcggtgg	28	9	0	0	rs17879825		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	CAPNS1	NM_001749	exon2	c.C141T	p.G47G	CGGCGGCGGTGGT		116	8	0.07	54	3	0.0555555556		19		3	0	0				T	36632054	C	T	36632054	2	4	12	1	0	0	0	0	0	0	0	1	2651	755	27	1		1	CAPNS1	19	36632054	Silent	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10	18793504	36632054	22496929	55	782											
ACTN4	81	mdanderson.org	37	chr19	39214851	39214851	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccctgccggacgccgataggGagcgcgaggccatcctggcc	15	16	0	0	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_004924	exon15	c.G1747A	p.E583K	GATAGGGAGCGCG		42	3	0.07	62	0	0				140	0	0				A	39214851	G	A	39214851	3	1	12	1	0	0	0	0	1	0	0	0	207	1175	41	3	1805	3	ACTN4	19	39214851	Missense_Mutation	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10	2582797	39214851	19914132	56	783											
HIPK4	147746	mdanderson.org	37	chr19	40886728	40886728	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagccagacagtagtagggGgtcccatcttctgcggccac	12	13	3	1	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_144685	exon3	c.C1170A	p.T390T	GTAGGGGGTCCCA		41	3	0.07	52	0	0				0	0					T	40886728	G	T	40886728	2	4	12	1	0	0	0	0	0	0	0	1	7159	1219	43	3		3	HIPK4	19	40886728	Silent	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10	1671877	40886728	18242255	57	784											
CNFN	84518	mdanderson.org	37	chr19	42891589	42891589	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccaaagtcgtcggagatgCggcaggcaaggcacagagga	16	10	0	2	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_032488	exon3	c.G152A	p.R51H	GAGATGCGGCAGG		43	3	0.07	51	0	0				20	1	0.05				T	42891589	C	T	42891589	3	4	12	1	0	0	0	0	1	0	0	0	3618	768	27	1	194	1	CNFN	19	42891589	Missense_Mutation	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10	2004861	42891589	16237394	58	785											
CARD8	22900	hgsc.bcm.edu;broad.mit.edu	37	chr19	48715121	48715122	+	Missense_Mutation	DNP	TC	TC	AA													tcttttcctgctccaccagcTccttctcattctcagtaaga					novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	TC	TC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001184900	exon11	c.G1459T	p.E487L	ACCAGCTCCTTCT		195	10	0.05	275	0	0				9	0	0				AA	48715122	TC	AA	48715121	3	1	12	1	0	0	0	0	1	0	0	0	2669	1551	54	5	157	5	CARD8	19	48715121	Missense_Mutation	DNP	TC	TCGA-2G-AAFM-01A-11D-A42Y-10	5823532	48715121	10413862	59	786											
GYS1	2997	mdanderson.org	37	chr19	49473946	49473946	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcatccaggctgcggaaccGccggtcaagaatgtagatac	11	11	2	2	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_002103	exon14	c.C1666T	p.R556W	GGAACCGCCGGTC		49	3	0.06	55	1	0.0181818182				16	0	0				A	49473946	G	A	49473946	3	1	12	1	0	0	0	0	1	0	0	0	6952	1086	38	1	559	1	GYS1	19	49473946	Missense_Mutation	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10	758825	49473946	9655037	60	787											
FLT3LG	2323	mdanderson.org	37	chr19	49979713	49979713	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcctctggcggctggtcCtggcacagcgctggatggag	19	11	1	0	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001204503	exon4	c.C232A	p.L78M	CTGGTCCTGGCAC		45	3	0.07	49	0	0				34	0	0				A	49979713	C	A	49979713	3	1	12	1	0	0	0	0	1	0	0	0	5975	680	24	3	246	3	FLT3LG	19	49979713	Missense_Mutation	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10	505767	49979713	9149270	61	788											
SPIB	6689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	50926238	50926238	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcgaactggcccccagcCtggaggccccggggcctggc	14	18	0	0	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001243999	exon4	c.C283A	p.L95M	CCCAGCCTGGAGG		158	20	0.13	235	0	0				17	1	0.06				A	50926238	C	A	50926238	3	1	12	1	0	0	0	0	1	0	0	0	15105	680	24	3	297	3	SPIB	19	50926238	Missense_Mutation	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10	946525	50926238	8202745	62	789											
ZNF512B	57473	mdanderson.org	37	chr20	62595260	62595260	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctctgccactgctcttcaGggccacctgtgggtaaggca	11	15	3	0	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_020713	exon9	c.C1487A	p.P496H	TCTTCAGGGCCAC		47	3	0.06	41	0	0				0	0					T	62595260	G	T	62595260	3	4	12	1	0	0	0	0	1	0	0	0	18013	1000	35	3	1227	3	ZNF512B	20	62595260	Missense_Mutation	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10		62595260	430260	63	790											
KRTAP10-2	386679	mdanderson.org	37	chr21	45970730	45970730	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcagcacggagaggaagcCccagagcaaacaggtacaca	13	11	0	2	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_198693	exon1	c.G612T	p.G204G	GGAAGCCCCAGAG		62	3	0.05	32	0	0				2	0	0				A	45970730	C	A	45970730	2	1	12	1	0	0	0	0	0	0	0	1	8551	610	22	3		3	KRTAP10-2	21	45970730	Silent	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10		45970730	2159165	64	791											
CPT1B	1375	mdanderson.org	37	chr22	51016211	51016211	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctgtgcgcaccttgatgCggatcaggcgtttcttccag	11	13	2	1	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001145135	exon2	c.G134A	p.R45H	TTGATGCGGATCA		58	3	0.05	44	0	0				8	0	0				T	51016211	C	T	51016211	3	4	12	1	0	0	0	0	1	0	0	0	3855	768	27	1	2256	1	CPT1B	22	51016211	Missense_Mutation	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10		51016211	288355	65	792											
VSIG4	11326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	65253547	65253547	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggtgacagggtctgagcCacgttgtaccagccacttca	12	11	2	2	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	.	NM_001100431	exon2	c.G181T	p.G61C	CTGAGCCACGTTG		179	54	0.3	153	0	0				5	0	0				A	65253547	C	A	65253547	3	1	12	1	0	0	0	0	1	0	0	0	17284	594	21	3	1050	3	VSIG4	23	65253547	Missense_Mutation	SNP	C	TCGA-2G-AAFM-01A-11D-A42Y-10		65253547	90017013	66	793											
MMGT1	93380	broad.mit.edu	37	chrX	135055906	135055906	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcttcttccaccggcgggTgtccgcgcgccgcagaaaga	12	14	2	2	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	MMGT1	.	.	.	.	GGCGGGTGTCCGC		94	20	0.21	62	14	0.2258064516		14		0	0					G	135055906	T	G	135055906	3	3	12	1	0	0	0	0	1	0	0	0	9694	1711	59	4		4	MMGT1	23	135055906	Missense_Mutation	SNP	T	TCGA-2G-AAFM-01A-11D-A42Y-10	69802359	135055906	20214654	67	794											
BRCC3	79184	broad.mit.edu	37	chrX	154348401	154348401	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caagaaaaggaagagcttatGcaagaactttcttctctaga	8	7	2	4	novel		TCGA-2G-AAFM-01A-11D-A42Y-10	TCGA-2G-AAFM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8be26d25-830f-4431-baf5-beeeef18d14b	f6c51fe1-7d6d-4ef6-aacb-cddbdd9be8b0	.	BRCC3	NM_024332	exon11	c.G927T	p.M309I	GCTTATGCAAGAA		150	4	0.03	100	0	0		44		6	0	0				T	154348401	G	T	154348401	3	4	12	1	0	0	0	0	1	0	0	0	1502	1319	46	2	969	2	BRCC3	23	154348401	Missense_Mutation	SNP	G	TCGA-2G-AAFM-01A-11D-A42Y-10	19292495	154348401	922159	68	795											
CHD5	26038	mdanderson.org	37	chr1	6185281	6185281	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccttccgctgtcgggcatTgaagcccagcacctgggcga	14	14	0	1	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_015557	exon29	c.A4273G	p.N1425D	GGGCATTGAAGCC		51	3	0.06	28	0	0				0	0					C	6185281	T	C	6185281	3	2	13	1	0	0	0	0	1	0	0	0	3350	1812	63	4	1643	4	CHD5	1	6185281	Missense_Mutation	SNP	T	TCGA-2G-AAFN-01A-31D-A42Y-10		6185281	243065340	1	796											
RPS6KA1	6195	broad.mit.edu	37	chr1	26898009	26898009	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgggaatcccgagtgcctgCgcatctgtgactttggtttt	12	11	1	1	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	RPS6KA1	NM_001006665	exon17	c.C1687T	p.R563C	TGCCTGCGCATCT		273	6	0.02	185	0	0		65		78	0	0				T	26898009	C	T	26898009	3	4	13	1	0	0	0	0	1	0	0	0	13701	768	27	1	1869	1	RPS6KA1	1	26898009	Missense_Mutation	SNP	C	TCGA-2G-AAFN-01A-31D-A42Y-10	20712728	26898009	222352612	2	797											
GPATCH3	63906	mdanderson.org	37	chr1	27226507	27226507	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctccgtaggtagccgaaGtctgcggatgagacagcgac	14	11	1	1	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_022078	exon1	c.C427A	p.L143I	GCCGAAGTCTGCG		114	5	0.04	69	0	0				47	0	0				T	27226507	G	T	27226507	3	4	13	1	0	0	0	0	1	0	0	0	6631	1029	36	3	1178	3	GPATCH3	1	27226507	Missense_Mutation	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10	328498	27226507	222024114	3	798											
DNASE2B	58511	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	84880407	84880407	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtgtatttcccaaaagggCaccaaaaatcgctggacatg	10	9	0	0	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	DNASE2B	NM_021233	exon6	c.C942T	p.G314G	AAAGGGCACCAAA		308	12	0.04	253	0	0		40		0	0					T	84880407	C	T	84880407	2	4	13	1	0	0	0	0	0	0	0	1	4692	697	25	2		2	DNASE2B	1	84880407	Silent	SNP	C	TCGA-2G-AAFN-01A-31D-A42Y-10	57653900	84880407	164370214	4	799											
WDR63	126820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr1	85573731	85573731	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttagcacaatatgtttttgGgatattagaccacagaaacc	7	7	0	2	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_145172	exon15	c.G1569A	p.W523X	TTTTTGGGATATT		56	14	0.25	68	0	0				0	0					A	85573731	G	A	85573731	4	1	13	1	0	0	0	0	0	1	0	0	17373	1241	43	3	1623	3	WDR63	1	85573731	Nonsense_Mutation	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10	693324	85573731	163676890	5	800											
SEC22B	9554	broad.mit.edu	37	chr1	145109259	145109260	+	RNA	INS	-	-	A													atgccactgcactccagcccINSgggggcagagcgagactccg					rs11386827	bycluster;by1000genomes	TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	.	.	.	.	CCAGCCCGGGGGC		12	5	0.42	5	0	0				0	0					A	145109260	-	A	145109259	6	5	13	0	1	1	1	0	0	0	0	0	14042	667	23	0		0	SEC22B	1	145109259	RNA	INS	-	TCGA-2G-AAFN-01A-31D-A42Y-10	59535528	145109259	104141362	6	801											
ETV3L	440695	broad.mit.edu	37	chr1	157062558	157062558	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacctccctgggatccagGcctccctttgcctccatcat	7	17	1	1	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	ETV3L	NM_001004341	exon5	c.C969A	p.G323G	ATCCAGGCCTCCC		212	4	0.02	132	0	0		73		1	0	0				T	157062558	G	T	157062558	2	4	13	1	0	0	0	0	0	0	0	1	5308	1190	42	2		2	ETV3L	1	157062558	Silent	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10	11953299	157062558	92188063	7	802											
C1orf114	57821	mdanderson.org	37	chr1	169390745	169390745	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccattccctttacttcgatcTgagttgacagcagagcttgg	9	11	1	3	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_021179	exon3	c.A924G	p.S308S	TCGATCTGAGTTG		131	5	0.04	93	0	0				2	0	0				C	169390745	T	C	169390745	2	2	13	1	0	0	0	0	0	0	0	1	2000	1567	55	4		4	C1orf114	1	169390745	Silent	SNP	T	TCGA-2G-AAFN-01A-31D-A42Y-10	12328187	169390745	79859876	8	803											
TBCE	6905	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr1	235577756	235577756	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cttctttaccaggcacccgaCaggaggatcctttattcgtc	8	13	1	0	rs144747353	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_003193	exon4	c.C194G	p.T65R	ACCCGACAGGAGG		59	7	0.12	70	0	0				40	10	0.25				G	235577756	C	G	235577756	3	3	13	1	0	0	0	0	1	0	0	0	15693	478	17	5	204	5	TBCE	1	235577756	Missense_Mutation	SNP	C	TCGA-2G-AAFN-01A-31D-A42Y-10	66187011	235577756	13672865	9	804											
WDR33	55339	mdanderson.org	37	chr2	128480869	128480869	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cattccaggtaaaaggtttaGattatatcgatctcgcattt	7	7	1	1	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_018383	exon12	c.C1249A	p.L417I	GGTTTAGATTATA		103	5	0.05	108	0	0				4	0	0				T	128480869	G	T	128480869	3	4	13	1	0	0	0	0	1	0	0	0	17346	933	33	3	2805	3	WDR33	2	128480869	Missense_Mutation	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10		128480869	114718504	10	805											
TLK1	9874	broad.mit.edu	37	chr2	171911637	171911637	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttggttgtacaatagggtGgtccccaaatgctaatgcag	11	8	0	0	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	TLK1	NM_012290	exon7	c.C595A	p.H199N	TAGGGTGGTCCCC		568	6	0.01	602	1	0.0016611296		134		6	0	0				T	171911637	G	T	171911637	3	4	13	1	0	0	0	0	1	0	0	0	16002	1348	47	3	1765	3	TLK1	2	171911637	Missense_Mutation	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10	43430768	171911637	71287736	11	806											
CNTN4	152330	broad.mit.edu	37	chr3	3067877	3067877	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtaacgcatgatcactcGctagacatcgtgtttacttg	9	10	1	2	rs375250470	alternate_allele	TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	CNTN4_ENST00000418658,NS,carcinoma,0,2	CNTN4	NM_175607	exon15	c.G1578T	p.S526S	TCACTCGCTAGAC		216	5	0.02	176	1	0.0056818182		335	2	0	0					T	3067877	G	T	3067877	2	4	13	1	0	0	0	0	0	0	0	1	3666	1074	38	1		1	CNTN4	3	3067877	Silent	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10		3067877	194954553	12	807											
DCUN1D4	23142	broad.mit.edu	37	chr4	52777312	52777312	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attaggaaaaatctggccccTttttccagtttttcaccaat	5	10	2	0	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	DCUN1D4	NM_001040402	exon9	c.T692C	p.L231P	GGCCCCTTTTTCC		128	4	0.03	130	1	0.0076923077		26		5	0	0				C	52777312	T	C	52777312	3	2	13	1	0	0	0	0	1	0	0	0	4339	1609	56	4	726	4	DCUN1D4	4	52777312	Missense_Mutation	SNP	T	TCGA-2G-AAFN-01A-31D-A42Y-10		52777312	138376964	13	808											
ADH4	127	broad.mit.edu	37	chr4	100052899	100052899	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaggccaaagacagcacaaGtcgaaccaggggtgacctgc	12	12	0	2	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	ADH4	NM_000670	exon6	c.C599A	p.T200N	GCACAAGTCGAAC		66	3	0.05	70	0	0		35		0	0					T	100052899	G	T	100052899	3	4	13	1	0	0	0	0	1	0	0	0	309	1029	36	3	559	3	ADH4	4	100052899	Missense_Mutation	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10	47275587	100052899	91101377	14	809											
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	138450831	138450831	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgatgagattgtcaccaaActgttgagtgactggtgact	11	6	1	5	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_019035	exon1	c.T2412C	p.S804S	CACCAAACTGTTG		112	55	0.49	123	0	0				1	0	0				G	138450831	A	G	138450831	2	3	13	1	0	0	0	0	0	0	0	1	11559	40	2	4		4	PCDH18	4	138450831	Silent	SNP	A	TCGA-2G-AAFN-01A-31D-A42Y-10	38397932	138450831	52703445	15	810											
RBM46	166863	mdanderson.org	37	chr4	155718042	155718042	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatggacaaaggaaatttggCggtcctcctccaggtgtgga	13	8	0	0	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_144979	exon2	c.C138T	p.G46G	ATTTGGCGGTCCT		39	3	0.08	52	0	0				1	0	0				T	155718042	C	T	155718042	2	4	13	1	0	0	0	0	0	0	0	1	13191	755	27	1		1	RBM46	4	155718042	Silent	SNP	C	TCGA-2G-AAFN-01A-31D-A42Y-10	17267211	155718042	35436234	16	811											
CAMK4	814	broad.mit.edu	37	chr5	110819728	110819728	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtttccaatcaggcagCggtgaaggctgtggtggcct	14	9	2	1	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	CAMK4,NS,carcinoma,0,1	CAMK4	NM_001744	exon11	c.C986T	p.A329V	AGGCAGCGGTGAA		143	4	0.03	130	0	0		77	1	0	0					T	110819728	C	T	110819728	3	4	13	1	0	0	0	0	1	0	0	0	2623	768	27	1	1028	1	CAMK4	5	110819728	Missense_Mutation	SNP	C	TCGA-2G-AAFN-01A-31D-A42Y-10		110819728	70095532	17	812											
TNXB	7148	mdanderson.org	37	chr6	32064279	32064279	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgtagcccgcattgcaaaCacacacgccgttctcgcagc	9	16	1	0	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_019105	exon3	c.G1351T	p.V451F	TGCAAACACACAC		19	2	0.11	17	0	0				0	0					A	32064279	C	A	32064279	3	1	13	1	0	0	0	0	1	0	0	0	16405	478	17	3	13530	3	TNXB	6	32064279	Missense_Mutation	SNP	C	TCGA-2G-AAFN-01A-31D-A42Y-10		32064279	139050788	18	813											
DAAM2	23500	mdanderson.org	37	chr6	39869697	39869697	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgacctggtgtcggccctgCgctctggggaggtcttcgac	15	12	2	1	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_001201427	exon25	c.C3091T	p.R1031C	GCCCTGCGCTCTG		47	3	0.06	44	0	0				0	0					T	39869697	C	T	39869697	3	4	13	1	0	0	0	0	1	0	0	0	4240	768	27	1	3182	1	DAAM2	6	39869697	Missense_Mutation	SNP	C	TCGA-2G-AAFN-01A-31D-A42Y-10	7805418	39869697	131245370	19	814											
PMS2	5395	broad.mit.edu	37	chr7	6026444	6026444	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gattttctccaggacaaatcTttgccctaaacttcctgtaa	5	11	2	0	rs267608167		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	PMS2	NM_000535	exon11	c.A1952G	p.K651R	CAAATCTTTGCCC		503	5	0.01	388	1	0.0025773196		88		15	0	0				C	6026444	T	C	6026444	3	2	13	1	0	0	0	0	1	0	0	0	12190	1609	56	4	656	4	PMS2	7	6026444	Missense_Mutation	SNP	T	TCGA-2G-AAFN-01A-31D-A42Y-10		6026444	153112219	20	815											
EZH2	0	broad.mit.edu	37	chr7	148512600	148512600	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatggaaagatgctaacccTttttcagctgtatctttctg	8	8	3	1	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	EZH2	NM_004456	exon13	c.A1544G	p.K515R	TAACCCTTTTTCA		394	6	0.02	315	0	0		823		87	0	0				C	148512600	T	C	148512600	3	2	13	1	0	0	0	0	1	0	0	0	5362	1609	56	4	743	4	EZH2	7	148512600	Missense_Mutation	SNP	T	TCGA-2G-AAFN-01A-31D-A42Y-10	142486156	148512600	10626063	21	816											
GRHPR	9380	mdanderson.org	37	chr9	37428556	37428556	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcactgtcggcatcatcggGctggggcgcataggtgaggc	17	10	1	1	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_012203	exon5	c.G480T	p.G160G	CATCGGGCTGGGG		50	3	0.06	29	0	0				198	1	0.01				T	37428556	G	T	37428556	2	4	13	1	0	0	0	0	0	0	0	1	6806	1190	42	2		2	GRHPR	9	37428556	Silent	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10		37428556	103784875	22	817											
FANK1	92565	mdanderson.org	37	chr10	127585221	127585221	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagccgaccatggagcccCagagtaagggaggcccgggc	16	13	0	1	rs202109621		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_145235	exon1	c.C10T	p.Q4X	GAGCCCCAGAGTA		30	4	0.13	36	2	0.0555555556				2	0	0				T	127585221	C	T	127585221	4	4	13	1	0	0	0	0	0	1	0	0	5704	595	21	3	12	3	FANK1	10	127585221	Nonsense_Mutation	SNP	C	TCGA-2G-AAFN-01A-31D-A42Y-10		127585221	7949526	23	818											
TNNI2	7136	mdanderson.org	37	chr11	1862339	1862339	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcggagggtgcgcatgtcgGccgatgccatgctcaaggcc	16	12	1	0	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_001145841	exon5	c.G355T	p.A119S	ATGTCGGCCGATG		29	3	0.1	91	0	0				4	0	0				T	1862339	G	T	1862339	3	4	13	1	0	0	0	0	1	0	0	0	16386	1203	42	2	392	2	TNNI2	11	1862339	Missense_Mutation	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10		1862339	133144177	24	819											
NLRP14	338323	broad.mit.edu	37	chr11	7081206	7081206	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaagagcctgacgcatctGgatctaggatcaaactggct	10	10	3	2	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	NLRP14	NM_176822	exon9	c.G2715T	p.L905L	GCATCTGGATCTA		214	5	0.02	231	0	0		187		0	0					T	7081206	G	T	7081206	2	4	13	1	0	0	0	0	0	0	0	1	10522	1335	47	3		3	NLRP14	11	7081206	Silent	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10	5218867	7081206	127925310	25	820											
KCNK7	10089	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr11	65363219	65363219	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaaccaggagcccgtatcGggaccagggccttagacccc	11	16	0	1	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_005714	exon1	c.C25T	p.R9X	CGTATCGGGACCA		102	6	0.06	111	0	0				0	0					A	65363219	G	A	65363219	4	1	13	1	0	0	0	0	0	1	0	0	8114	1124	39	1	1011	1	KCNK7	11	65363219	Nonsense_Mutation	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10	58282013	65363219	69643297	26	821											
MARS	4141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr12	57883073	57883073	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttttttttgttatctggctGggagcaagatgacctcacta	9	7	2	2	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_004990	exon3	c.G224A	p.W75X	CTGGCTGGGAGCA		125	24	0.19	114	0	0				25	3	0.12				A	57883073	G	A	57883073	4	1	13	1	0	0	0	0	0	1	0	0	9365	1357	47	3	234	3	MARS	12	57883073	Nonsense_Mutation	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10		57883073	75968822	27	822											
TRIM13	10206	mdanderson.org	37	chr13	50590789	50590789	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagtatgttaaggatagttGctcctgagtcaattcttcac	8	8	4	1	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	.	.	.	.	ATAGTTGCTCCTG		144	8	0.06	204	1	0.0049019608				0	0					T	50590789	G	T	50590789	1	4	13	0	1	0	0	0	0	0	0	0	16548	1334	46	2		2	TRIM13	13	50590789	RNA	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10		50590789	64579089	28	823											
RASA3	22821	mdanderson.org	37	chr13	114778651	114778651	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagctggaagaggttgggGgagagaatggcgggcgcaaa	21	4	0	3	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	RASA3,colon,carcinoma,-1,1	RASA3	NM_007368	exon15	c.C1479A	p.S493S	GTTGGGGGAGAGA		40	3	0.08	74	0	0		-1	1	2	0	0				T	114778651	G	T	114778651	2	4	13	1	0	0	0	0	0	0	0	1	13113	1219	43	3		3	RASA3	13	114778651	Silent	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10	64187862	114778651	391227	29	824											
GTF2A1	2957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	81670290	81670290	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctgggtctgcgcttgctgAggtactgtctgctgaggctg	16	9	2	2	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_015859	exon3	c.T291A	p.P97P	TTGCTGAGGTACT		93	31	0.33	111	0	0				0	0					T	81670290	A	T	81670290	2	4	13	1	0	0	0	0	0	0	0	1	6892	291	11	5		5	GTF2A1	14	81670290	Silent	SNP	A	TCGA-2G-AAFN-01A-31D-A42Y-10		81670290	25679250	30	825											
SPESP1	246777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr15	69238736	69238736	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccagttattgccagtaggacGaacaagtaataaaattgatg	9	6	0	1	rs142183563	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_145658	exon2	c.G863A	p.R288Q	TAGGACGAACAAG		170	14	0.08	165	0	0				8	0	0				A	69238736	G	A	69238736	3	1	13	1	0	0	0	0	1	0	0	0	15095	1058	37	1	869	1	SPESP1	15	69238736	Missense_Mutation	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10		69238736	33292656	31	826											
CYP1A1	1543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr15	75015057	75015057	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgggcagcccacactggtcCagagtctgggctgaaggaca	15	12	1	2	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_000499	exon2	c.G382T	p.G128X	CTGGTCCAGAGTC		99	26	0.26	88	0	0				0	0					A	75015057	C	A	75015057	4	1	13	1	0	0	0	0	0	1	0	0	4172	603	21	3	1180	3	CYP1A1	15	75015057	Nonsense_Mutation	SNP	C	TCGA-2G-AAFN-01A-31D-A42Y-10	5776321	75015057	27516335	32	827											
METTL9	51108	mdanderson.org	37	chr16	21611083	21611083	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctggcgggctggctgtgccTgagcctggcgtccgtgtggc	19	12	0	1	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_016025	exon1	c.T29C	p.L10P	TGTGCCTGAGCCT		12	2	0.17	17	0	0				37	0	0				C	21611083	T	C	21611083	3	2	13	1	0	0	0	0	1	0	0	0	9557	1580	55	4	31	4	METTL9	16	21611083	Missense_Mutation	SNP	T	TCGA-2G-AAFN-01A-31D-A42Y-10		21611083	68743670	33	828											
MVP	9961	ucsc.edu;bcgsc.ca	37	chr16	29853393	29853393	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtcatcaccatcgaaacgGcggatcatgccaggctgcaa	10	13	3	0	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	MVP	NM_017458	exon10	c.G1594T	p.A532S	GAAACGGCGGATC		31	4	0.13	26	0	0		80		58	0	0				T	29853393	G	T	29853393	3	4	13	1	0	0	0	0	1	0	0	0	10043	1203	42	2	1628	2	MVP	16	29853393	Missense_Mutation	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10	8242310	29853393	60501360	34	829											
PRSS36	146547	mdanderson.org	37	chr16	31154157	31154157	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaagccgcgctcaggttcaCgggcgtgcgcagctgcagca	15	14	2	0	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_001258290	exon9	c.G1258T	p.V420L	GGTTCACGGGCGT		41	3	0.07	34	0	0				0	0					A	31154157	C	A	31154157	3	1	13	1	0	0	0	0	1	0	0	0	12673	536	19	1	1337	1	PRSS36	16	31154157	Missense_Mutation	SNP	C	TCGA-2G-AAFN-01A-31D-A42Y-10	1300764	31154157	59200596	35	830											
SNX20	124460	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	50707354	50707354	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacagtgagctccttcaggGtgatgcctcggggcgtgggc	17	11	1	2	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	SNX20	NM_182854	exon4	c.C914A	p.T305N	TTCAGGGTGATGC		74	17	0.23	71	1	0.014084507		50		1	0	0				T	50707354	G	T	50707354	3	4	13	1	0	0	0	0	1	0	0	0	14945	1261	44	3	183	3	SNX20	16	50707354	Missense_Mutation	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10	19553197	50707354	39647399	36	831											
COG8	84342	mdanderson.org	37	chr16	69364875	69364875	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgagctcgggccccagcGcctggtcatccagggtgaaa	14	13	1	2	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_032382	exon5	c.C1706A	p.A569E	CCCAGCGCCTGGT		93	5	0.05	91	0	0				18	0	0				T	69364875	G	T	69364875	3	4	13	1	0	0	0	0	1	0	0	0	3687	1087	38	1	136	1	COG8	16	69364875	Missense_Mutation	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10	18657521	69364875	20989878	37	832											
TNK1	8711	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	7290430	7290430	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacccgtccagtccacagaGgcacccctgcccggggagat	11	18	0	2	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_001251902	exon9	c.G1369T	p.G457C	CACAGAGGCACCC		124	7	0.06	142	0	0				6	0	0				T	7290430	G	T	7290430	3	4	13	1	0	0	0	0	1	0	0	0	16376	1000	35	3	1384	3	TNK1	17	7290430	Missense_Mutation	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10		7290430	73904780	38	833											
MBD1	4152	mdanderson.org	37	chr18	47806263	47806263	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacccagtacctctggtaatAggtgtctgagcgtccacagg	11	12	2	1	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_015845	exon2	c.T100C	p.Y34H	GGTAATAGGTGTC		35	3	0.09	36	0	0				2	0	0				G	47806263	A	G	47806263	3	3	13	1	0	0	0	0	1	0	0	0	9391	420	15	4	1971	4	MBD1	18	47806263	Missense_Mutation	SNP	A	TCGA-2G-AAFN-01A-31D-A42Y-10		47806263	30270985	39	834											
ZNF236	7776	mdanderson.org	37	chr18	74580818	74580818	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaagactcattacaaaattAggtatgagtcattacatggg	9	5	2	3	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_007345	exon4	c.A535G	p.R179G	AAAATTAGGTATG		18	2	0.11	28	0	0				0	0					G	74580818	A	G	74580818	3	3	13	1	0	0	0	0	1	0	0	0	17846	434	15	4	549	4	ZNF236	18	74580818	Missense_Mutation	SNP	A	TCGA-2G-AAFN-01A-31D-A42Y-10	26774555	74580818	3496430	40	835											
ATP9B	374868	mdanderson.org	37	chr18	76870489	76870489	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatcaaaaatacaatgtgtTtacctttatacctggggtaa	6	6	1	0	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_198531	exon3	c.T428C	p.F143S	ATGTGTTTACCTT		46	3	0.07	70	0	0				2	0	0				C	76870489	T	C	76870489	3	2	13	1	0	0	0	0	1	0	0	0	1197	1841	64	4	438	4	ATP9B	18	76870489	Missense_Mutation	SNP	T	TCGA-2G-AAFN-01A-31D-A42Y-10	2289671	76870489	1206759	41	836											
GRIN3B	116444	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr19	1004822	1004822	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaagacgggcagtgcccagCggggcagctgtgcctggacc	17	13	0	1	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_138690	exon3	c.C1322T	p.A441V	GCCCAGCGGGGCA		84	4	0.05	77	0	0				0	0					T	1004822	C	T	1004822	3	4	13	1	0	0	0	0	1	0	0	0	6824	768	27	1	1332	1	GRIN3B	19	1004822	Missense_Mutation	SNP	C	TCGA-2G-AAFN-01A-31D-A42Y-10		1004822	58124161	42	837											
PNPLA6	10908	mdanderson.org	37	chr19	7615244	7615244	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacggtggcagccaggatGtcgcccttcgtgcgccagat	13	14	0	1	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_001166111	exon17	c.G1902T	p.M634I	CAGGATGTCGCCC		50	3	0.06	51	0	0				13	0	0				T	7615244	G	T	7615244	3	4	13	1	0	0	0	0	1	0	0	0	12216	1377	48	3	1964	3	PNPLA6	19	7615244	Missense_Mutation	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10	6610422	7615244	51513739	43	838											
MAP1S	55201	mdanderson.org	37	chr19	17838171	17838171	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgtcgctgagcccactgCggggcggggaggccgggcca	20	13	0	1	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_018174	exon5	c.C1978T	p.R660W	CCACTGCGGGGCG		24	3	0.13	20	0	0				77	0	0				T	17838171	C	T	17838171	3	4	13	1	0	0	0	0	1	0	0	0	9283	759	27	1	1996	1	MAP1S	19	17838171	Missense_Mutation	SNP	C	TCGA-2G-AAFN-01A-31D-A42Y-10	10222927	17838171	41290812	44	839											
ZNF208	7757	mdanderson.org	37	chr19	22157461	22157461	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttattataaccttctttgtgCaccttacactcatccacatt	2	12	2	0	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_007153	exon4	c.G375A	p.V125V	TTTGTGCACCTTA		114	5	0.04	116	0	0				2	0	0				T	22157461	C	T	22157461	2	4	13	1	0	0	0	0	0	0	0	1	17823	697	25	2		2	ZNF208	19	22157461	Silent	SNP	C	TCGA-2G-AAFN-01A-31D-A42Y-10	4319290	22157461	36971522	45	840											
DMKN	93099	mdanderson.org	37	chr19	35991442	35991442	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gacagagactcacctgatcgTctctgcctgcacgtttctgc	9	14	3	2	rs909072	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_033317	exon12	c.A1280T	p.D427V	TGATCGTCTCTGC		72	3	0.04	112	0	0				69	0	0				A	35991442	T	A	35991442	3	1	13	1	0	0	0	0	1	0	0	0	4610	1667	58	5	212	5	DMKN	19	35991442	Missense_Mutation	SNP	T	TCGA-2G-AAFN-01A-31D-A42Y-10	13833981	35991442	23137541	46	841											
KLC3	147700	mdanderson.org	37	chr19	45849918	45849918	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgcgggaggaactggaggaGacgcagcggcggcttcgggc	20	10	0	1	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_177417	exon3	c.G375C	p.E125D	GGAGGAGACGCAG		18	2	0.11	41	0	0				2	0	0				C	45849918	G	C	45849918	3	2	13	1	0	0	0	0	1	0	0	0	8377	933	33	5	381	5	KLC3	19	45849918	Missense_Mutation	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10	9858476	45849918	13279065	47	842											
AP2A1	160	mdanderson.org	37	chr19	50295218	50295218	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catggacagtgtcaagcagaGtgcggccctgtgcctccttc	12	13	1	1	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_130787	exon5	c.G500T	p.S167I	AGCAGAGTGCGGC		50	3	0.06	30	0	0				31	0	0				T	50295218	G	T	50295218	3	4	13	1	0	0	0	0	1	0	0	0	735	1029	36	3	518	3	AP2A1	19	50295218	Missense_Mutation	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10	4445300	50295218	8833765	48	843											
ZBTB46	140685	mdanderson.org	37	chr20	62421958	62421958	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttgaagtagcggctgctGcccagcaggacgttcttgtg	14	10	2	1	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_025224	exon2	c.C153A	p.G51G	GCTGCTGCCCAGC		28	3	0.11	39	0	0				6	0	0				T	62421958	G	T	62421958	2	4	13	1	0	0	0	0	0	0	0	1	17605	1306	46	2		2	ZBTB46	20	62421958	Silent	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10		62421958	603562	49	844											
SEPT6	23157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	118774680	118774680	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acagtgccccaaggatactgCcgcgccctcatcatcttgtt	8	15	3	0	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_145802	exon6	c.G762C	p.R254R	ATACTGCCGCGCC		149	12	0.08	78	0	0				126	6	0.05				G	118774680	C	G	118774680	2	3	13	1	0	0	0	0	0	0	0	1	14121	726	26	5		5	SEPT6	23	118774680	Silent	SNP	C	TCGA-2G-AAFN-01A-31D-A42Y-10		118774680	36495880	50	845											
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	134993829	134993829	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaaattctgattcaccagaGctgataaatatgacaggaca	7	8	3	4	novel		TCGA-2G-AAFN-01A-31D-A42Y-10	TCGA-2G-AAFN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ef2de696-2f9e-44e8-8445-af7a953aaa56	e4830f6d-72c5-4a5c-badb-a649ae2e82d7	.	.	NM_018666	exon18	c.G2238C	p.E746D	ACCAGAGCTGATA		255	49	0.19	141	0	0				0	0					C	134993829	G	C	134993829	3	2	13	1	0	0	0	0	1	0	0	0	13860	962	34	5	2304	5	SAGE1	23	134993829	Missense_Mutation	SNP	G	TCGA-2G-AAFN-01A-31D-A42Y-10	16219149	134993829	20276731	51	846											
PIP5K1A	8394	broad.mit.edu	37	chr1	151205142	151205142	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagtccaacataaagaggCggaatttctgcagaagctgc	11	9	1	2	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	PIP5K1A_ENST00000368888,NS,carcinoma,0,1	PIP5K1A	NM_001135638	exon7	c.C602A	p.A201E	AAGAGGCGGAATT		85	4	0.05	82	0	0		61	1	9	0	0				A	151205142	C	A	151205142	3	1	14	1	0	0	0	0	1	0	0	0	11986	768	27	1	628	1	PIP5K1A	1	151205142	Missense_Mutation	SNP	C	TCGA-2G-AAFO-01A-31D-A42Y-10		151205142	98045479	1	847											
EGLN1	54583	mdanderson.org	37	chr1	231557492	231557492	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcttcttccagtcctgaCgctggtgctccttgcagcag	11	13	1	1	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_022051	exon1	c.G143A	p.R48H	TCCTGACGCTGGT		15	3	0.2	16	0	0				4	0	0				T	231557492	C	T	231557492	3	4	14	1	0	0	0	0	1	0	0	0	4994	536	19	1	1157	1	EGLN1	1	231557492	Missense_Mutation	SNP	C	TCGA-2G-AAFO-01A-31D-A42Y-10	80352350	231557492	17693129	2	848											
SCCPDH	51097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	246927615	246927615	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaaggcactggtacagataAgaacaaaccaaatatcaaaa	6	9	1	2	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_016002	exon10	c.A1058T	p.K353M	CAGATAAGAACAA		83	19	0.23	97	0	0				173	45	0.26				T	246927615	A	T	246927615	3	4	14	1	0	0	0	0	1	0	0	0	13937	72	3	5	1096	5	SCCPDH	1	246927615	Missense_Mutation	SNP	A	TCGA-2G-AAFO-01A-31D-A42Y-10	15370123	246927615	2323006	3	849											
VGLL4	9686	mdanderson.org	37	chr3	11606410	11606410	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtggctgccgtgcaggctcAtggtgggggccacagcgcgc	19	12	1	0	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_001128219	exon3	c.T356C	p.M119T	AGGCTCATGGTGG		22	4	0.18	32	0	0				17	0	0				G	11606410	A	G	11606410	3	3	14	1	0	0	0	0	1	0	0	0	17220	217	8	4	546	4	VGLL4	3	11606410	Missense_Mutation	SNP	A	TCGA-2G-AAFO-01A-31D-A42Y-10		11606410	186416020	4	850											
ZFYVE20	64145	mdanderson.org	37	chr3	15115315	15115315	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgccccccttctgcttggCcagggtgtgcttcagctccc	11	16	2	0	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_022340	exon14	c.G2329A	p.A777T	GCTTGGCCAGGGT		51	3	0.06	57	0	0				3	0	0				T	15115315	C	T	15115315	3	4	14	1	0	0	0	0	1	0	0	0	17723	739	26	2	29	2	ZFYVE20	3	15115315	Missense_Mutation	SNP	C	TCGA-2G-AAFO-01A-31D-A42Y-10	3508905	15115315	182907115	5	851											
ZXDC	79364	mdanderson.org	37	chr3	126180459	126180459	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactgggcaacgtggactgGggcagcccatggcttccttc	15	12	0	0	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_025112	exon6	c.C2046A	p.P682P	GGACTGGGGCAGC		140	5	0.04	139	1	0.0071942446				37	0	0				T	126180459	G	T	126180459	2	4	14	1	0	0	0	0	0	0	0	1	18291	1219	43	3		3	ZXDC	3	126180459	Silent	SNP	G	TCGA-2G-AAFO-01A-31D-A42Y-10	111065144	126180459	71841971	6	852											
ATR	545	broad.mit.edu	37	chr3	142222247	142222247	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagtgataacagtagacaGctgaccaagacctaacatgg	10	9	0	5	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	ATR,colon,carcinoma,+1,1	ATR	NM_001184	exon30	c.C5245A	p.L1749M	TAGACAGCTGACC		549	7	0.01	515	1	0.0019417476		285	1	2	0	0				T	142222247	G	T	142222247	3	4	14	1	0	0	0	0	1	0	0	0	1202	962	34	2	2761	2	ATR	3	142222247	Missense_Mutation	SNP	G	TCGA-2G-AAFO-01A-31D-A42Y-10	16041788	142222247	55800183	7	853											
N4BP2	55728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	40154443	40154443	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctatttgtctgtgattacGgggagaggaaaccacagcca	11	10	1	2	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_018177	exon17	c.G5187T	p.T1729T	GATTACGGGGAGA		199	8	0.04	203	0	0				20	0	0				T	40154443	G	T	40154443	2	4	14	1	0	0	0	0	0	0	0	1	10157	1103	39	1		1	N4BP2	4	40154443	Silent	SNP	G	TCGA-2G-AAFO-01A-31D-A42Y-10		40154443	150999833	8	854											
COL25A1	84570	mdanderson.org	37	chr4	110223132	110223132	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtcgggtcctcggatctgGgctcccggccccctcctttc	13	17	1	0	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_032518	exon2	c.C44A	p.P15H	GATCTGGGCTCCC		33	3	0.09	27	0	0				1	0	0				T	110223132	G	T	110223132	3	4	14	1	0	0	0	0	1	0	0	0	3707	1232	43	3	2148	3	COL25A1	4	110223132	Missense_Mutation	SNP	G	TCGA-2G-AAFO-01A-31D-A42Y-10	70068689	110223132	80931144	9	855											
TRAM1L1	133022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	118006336	118006336	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgacaccataataatagaGggactttgagcccgtggctt	10	8	0	3	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_152402	exon1	c.C214T	p.L72F	AATAGAGGGACTT		114	19	0.17	181	0	0				0	0					A	118006336	G	A	118006336	3	1	14	1	0	0	0	0	1	0	0	0	16512	1000	35	3	899	3	TRAM1L1	4	118006336	Missense_Mutation	SNP	G	TCGA-2G-AAFO-01A-31D-A42Y-10	7783204	118006336	73147940	10	856											
PCDHA9	9752	mdanderson.org	37	chr5	140229869	140229869	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtggggaaggtgcgcgcaGtggacgccgactcgggctac	19	10	0	0	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_031857	exon1	c.G1789C	p.V597L	CGCGCAGTGGACG		43	3	0.07	34	0	0				0	0					C	140229869	G	C	140229869	3	2	14	1	0	0	0	0	1	0	0	0	11577	1029	36	5	1791	5	PCDHA9	5	140229869	Missense_Mutation	SNP	G	TCGA-2G-AAFO-01A-31D-A42Y-10		140229869	40685391	11	857											
SSR1	6745	mdanderson.org	37	chr6	7313285	7313285	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcctcacctctggggccGcctcggaacaagacagtggc	12	16	2	1	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_003144	exon1	c.C69A	p.G23G	GGGGCCGCCTCGG		45	3	0.07	48	0	0				75	0	0				T	7313285	G	T	7313285	2	4	14	1	0	0	0	0	0	0	0	1	15245	1074	38	1		1	SSR1	6	7313285	Silent	SNP	G	TCGA-2G-AAFO-01A-31D-A42Y-10		7313285	163801782	12	858											
ITPR3	3710	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	33638313	33638313	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacgccggtcaagtttgccCgtctctggactgagatcccc	10	15	3	1	rs147317574		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	ITPR3	NM_002224	exon19	c.C2401T	p.R801C	TTTGCCCGTCTCT		85	5	0.06	90	0	0		409		0	0					T	33638313	C	T	33638313	3	4	14	1	0	0	0	0	1	0	0	0	7965	652	23	1	2475	1	ITPR3	6	33638313	Missense_Mutation	SNP	C	TCGA-2G-AAFO-01A-31D-A42Y-10	26325028	33638313	137476754	13	859											
SDC2	6383	mdanderson.org	37	chr8	97506502	97506502	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agccggtccctggggaatatGcggcgcgcgtggatcctgct	16	12	0	0	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_002998	exon1	c.G3T	p.M1I	GAATATGCGGCGC		24	2	0.08	32	0	0				32	0	0				T	97506502	G	T	97506502	3	4	14	1	0	0	0	0	1	0	0	0	14005	1319	46	2	5	2	SDC2	8	97506502	Missense_Mutation	SNP	G	TCGA-2G-AAFO-01A-31D-A42Y-10		97506502	48857520	14	860											
TRPM6	140803	mdanderson.org	37	chr9	77359051	77359051	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgagggctttttaaggaGgctgagatctctgaaattag	12	5	2	3	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_017662	exon32	c.C5094A	p.A1698A	TAAGGAGGCTGAG		58	3	0.05	63	0	0				1	0	0				T	77359051	G	T	77359051	2	4	14	1	0	0	0	0	0	0	0	1	16650	987	35	3		3	TRPM6	9	77359051	Silent	SNP	G	TCGA-2G-AAFO-01A-31D-A42Y-10		77359051	63854380	15	861											
NET1	10276	mdanderson.org	37	chr10	5454763	5454763	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccttcggccgacacctcCgggtcggagctggacgggag	18	13	0	0	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_001047160	exon1	c.C108A	p.S36S	CACCTCCGGGTCG		19	3	0.16	20	0	0				0	0					A	5454763	C	A	5454763	2	1	14	1	0	0	0	0	0	0	0	1	10384	639	23	1		1	NET1	10	5454763	Silent	SNP	C	TCGA-2G-AAFO-01A-31D-A42Y-10		5454763	130079984	16	862											
FRMD4A	55691	mdanderson.org	37	chr10	13698996	13698996	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttggacgtcttgaactgagCcttgacgctgtagtggccct	13	10	1	3	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_018027	exon22	c.G2593A	p.A865T	ACTGAGCCTTGAC		9	2	0.22	8	0	0				2	0	0				T	13698996	C	T	13698996	3	4	14	1	0	0	0	0	1	0	0	0	6085	739	26	2	538	2	FRMD4A	10	13698996	Missense_Mutation	SNP	C	TCGA-2G-AAFO-01A-31D-A42Y-10	8244233	13698996	121835751	17	863											
ATAD1	84896	mdanderson.org	37	chr10	89530769	89530769	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atagccgagtcaaggtcctgAggacgattggtagctcccat	12	10	1	1	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_032810	exon7	c.T720C	p.P240P	GTCCTGAGGACGA		57	3	0.05	100	0	0				50	0	0				G	89530769	A	G	89530769	2	3	14	1	0	0	0	0	0	0	0	1	1069	291	11	4		4	ATAD1	10	89530769	Silent	SNP	A	TCGA-2G-AAFO-01A-31D-A42Y-10	75831773	89530769	46003978	18	864											
ATAD1	84896	hgsc.bcm.edu	37	chr10	89544257	89544257	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tataaagatgatggatggttGtagctttatggcaagggaga	14	2	0	3	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_032810	exon5	c.C553A	p.Q185K	ATGGTTGTAGCTT		98	4	0.04	126	0	0				29	0	0				T	89544257	G	T	89544257	3	4	14	1	0	0	0	0	1	0	0	0	1069	1386	48	3	556	3	ATAD1	10	89544257	Missense_Mutation	SNP	G	TCGA-2G-AAFO-01A-31D-A42Y-10	13488	89544257	45990490	19	865											
ZRANB1	54764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	126631712	126631712	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	taatagccaaaggagatcacCtcctgctacgaagcgggact	10	11	1	1	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_017580	exon1	c.C650G	p.P217R	GATCACCTCCTGC		72	10	0.14	88	0	0				21	5	0.24				G	126631712	C	G	126631712	3	3	14	1	0	0	0	0	1	0	0	0	18263	681	24	5	652	5	ZRANB1	10	126631712	Missense_Mutation	SNP	C	TCGA-2G-AAFO-01A-31D-A42Y-10	37087455	126631712	8903035	20	866											
MUC6	4588	bcgsc.ca	37	chr11	1016871	1016871	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taggacctgtggaagagaagGgactgctccctgtaggtggg	17	7	0	1	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	MUC6	NM_005961	exon31	c.C5930A	p.P1977H	GAGAAGGGACTGC		393	12	0.03	459	10	0.0217864924		408		0	0					T	1016871	G	T	1016871	3	4	14	1	0	0	0	0	1	0	0	0	10027	1232	43	3	1401	3	MUC6	11	1016871	Missense_Mutation	SNP	G	TCGA-2G-AAFO-01A-31D-A42Y-10		1016871	133989645	21	867											
QSER1	79832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	32955965	32955965	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tacttccttaaatggaaatcAggttactgtgaacctttcac	6	9	2	1	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_001076786	exon4	c.A2774G	p.Q925R	GAAATCAGGTTAC		156	38	0.24	167	0	0				1	1	1				G	32955965	A	G	32955965	3	3	14	1	0	0	0	0	1	0	0	0	12933	188	7	4	2780	4	QSER1	11	32955965	Missense_Mutation	SNP	A	TCGA-2G-AAFO-01A-31D-A42Y-10	31939094	32955965	102050551	22	868											
CHST1	8534	mdanderson.org	37	chr11	45671900	45671900	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggcacgcctcggccgccaCggtcaggttgagtagcccgc	15	16	1	1	rs147129669	alternate_allele	TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_003654	exon4	c.G574A	p.V192M	CCGCCACGGTCAG		22	2	0.09	20	0	0				11	0	0				T	45671900	C	T	45671900	3	4	14	1	0	0	0	0	1	0	0	0	3419	536	19	1	665	1	CHST1	11	45671900	Missense_Mutation	SNP	C	TCGA-2G-AAFO-01A-31D-A42Y-10	12715935	45671900	89334616	23	869											
DGKZ	8525	hgsc.bcm.edu	37	chr11	46394020	46394020	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctctggtatctcaatcccCgacaagtcttcgacctgagc	7	15	3	1	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_001105540	exon12	c.C1534A	p.R512R	AATCCCCGACAAG		100	4	0.04	135	0	0				34	0	0				A	46394020	C	A	46394020	2	1	14	1	0	0	0	0	0	0	0	1	4502	644	23	1		1	DGKZ	11	46394020	Silent	SNP	C	TCGA-2G-AAFO-01A-31D-A42Y-10	722120	46394020	88612496	24	870											
SYVN1	84447	broad.mit.edu	37	chr11	64898172	64898173	+	Frame_Shift_Ins	INS	-	-	GG													gtggtggggggtggggggcaINSgggggtggcccctgatccgc					novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	SYVN1	NM_032431	exon11	c.1065_1066insCC	p.P355fs	GGGGGCAGGGGGT		18	7	0.39	23	0	0		55		7	0	0				GG	64898173	-	GG	64898172	7	5	14	1	0	1	1	0	0	0	0	0	15543	175	7	0	812	0	SYVN1	11	64898172	Frame_Shift_Ins	INS	-	TCGA-2G-AAFO-01A-31D-A42Y-10	18504152	64898172	70108344	25	871											
EPS8	2059	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr12	15803897	15803897	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcccagccattgcggaatcGtggaacatatggtggaataa	11	9	0	0	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_004447	exon14	c.C1294T	p.R432X	GGAATCGTGGAAC		461	25	0.05	259	0	0				9	0	0				A	15803897	G	A	15803897	4	1	14	1	0	0	0	0	0	1	0	0	5222	1153	40	1	1206	1	EPS8	12	15803897	Nonsense_Mutation	SNP	G	TCGA-2G-AAFO-01A-31D-A42Y-10		15803897	118047998	26	872											
EP400	57634	broad.mit.edu;mdanderson.org	37	chr12	132527894	132527894	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaggatgcccagaagtccGcacaggagggggtgctggga	19	8	0	1	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	EP400	NM_015409	exon33	c.G6253T	p.A2085S	AAGTCCGCACAGG		78	4	0.05	101	0	0		370		4	0	0				T	132527894	G	T	132527894	3	4	14	1	0	0	0	0	1	0	0	0	5177	1087	38	1	6376	1	EP400	12	132527894	Missense_Mutation	SNP	G	TCGA-2G-AAFO-01A-31D-A42Y-10	116723997	132527894	1324001	27	873											
SACS	26278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	23909053	23909053	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	aggtaaaagacgtttcatgtCttcgtgaatgcaattgtaaa	9	5	2	2	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_014363	exon10	c.G8962T	p.D2988Y	TCATGTCTTCGTG		105	18	0.17	107	0	0				1	0	0				A	23909053	C	A	23909053	3	1	14	1	0	0	0	0	1	0	0	0	13855	913	32	3	4781	3	SACS	13	23909053	Missense_Mutation	SNP	C	TCGA-2G-AAFO-01A-31D-A42Y-10		23909053	91260825	28	874											
EDDM3B	64184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	21238469	21238469	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtacaaatgtgatgtcctcAtgagagaaaatgaagctctg	10	6	2	4	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_022360	exon2	c.A160G	p.M54V	GTCCTCATGAGAG		189	23	0.12	230	0	0				0	0					G	21238469	A	G	21238469	3	3	14	1	0	0	0	0	1	0	0	0	4936	217	8	4	162	4	EDDM3B	14	21238469	Missense_Mutation	SNP	A	TCGA-2G-AAFO-01A-31D-A42Y-10		21238469	86111071	29	875											
PSME2	5721	mdanderson.org	37	chr14	24612675	24612675	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acaattttctccaggttgctGctgatgatatgataaagctc	8	8	1	3	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_002818	exon11	c.C663A	p.S221R	GTTGCTGCTGATG		96	4	0.04	99	1	0.0101010101				797	0	0				T	24612675	G	T	24612675	3	4	14	1	0	0	0	0	1	0	0	0	12755	1310	46	2	60	2	PSME2	14	24612675	Missense_Mutation	SNP	G	TCGA-2G-AAFO-01A-31D-A42Y-10	3374206	24612675	82736865	30	876											
MAPKBP1	23005	mdanderson.org	37	chr15	42114620	42114620	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccagtggagctgctccaGgtgtggtcagagggccagca	17	10	1	1	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_001128608	exon27	c.G3247T	p.G1083W	GCTCCAGGTGTGG		43	3	0.07	65	0	0				2	0	0				T	42114620	G	T	42114620	3	4	14	1	0	0	0	0	1	0	0	0	9341	1014	35	3	3349	3	MAPKBP1	15	42114620	Missense_Mutation	SNP	G	TCGA-2G-AAFO-01A-31D-A42Y-10		42114620	60416772	31	877											
PIGQ	9091	hgsc.bcm.edu;bcgsc.ca	37	chr16	629151	629151	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaacgttctgcgccagcgcGtggactcctgttcctatgac	12	13	1	1	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_148920	exon7	c.G1306A	p.V436M	CAGCGCGTGGACT		121	6	0.05	108	0	0				28	0	0				A	629151	G	A	629151	3	1	14	1	0	0	0	0	1	0	0	0	11943	1145	40	1	1328	1	PIGQ	16	629151	Missense_Mutation	SNP	G	TCGA-2G-AAFO-01A-31D-A42Y-10		629151	89725602	32	878											
PKD1	5310	mdanderson.org	37	chr16	2152493	2152493	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggtctcctccaggggcagCagcccctctgtccgccacac	11	18	2	0	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_001009944	exon25	c.G9090A	p.L3030L	GGGCAGCAGCCCC		32	3	0.09	36	0	0				16	0	0				T	2152493	C	T	2152493	2	4	14	1	0	0	0	0	0	0	0	1	12010	697	25	2		2	PKD1	16	2152493	Silent	SNP	C	TCGA-2G-AAFO-01A-31D-A42Y-10	1523342	2152493	88202260	33	879											
RPH3AL	9501	broad.mit.edu	37	chr17	171132	171133	+	In_Frame_Ins	INS	-	-	CCG													ctgcaggatggcctccacctINSccgccgggctgaggtgctgc					novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	RPH3AL	NM_006987	exon4	c.152_153insCGG	p.E51delinsAE	TCCACCTCCGCCG		59	7	0.12	62	0	0		18		1	0	0				CCG	171133	-	CCG	171132	7	5	14	1	0	1	1	0	0	0	0	0	13603	1551	54	0	823	0	RPH3AL	17	171132	In_Frame_Ins	INS	-	TCGA-2G-AAFO-01A-31D-A42Y-10		171132	81024078	34	880											
PITPNM3	83394	mdanderson.org	37	chr17	6358884	6358884	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcccttgcgcaggatcatgCgcgagttgttcttctttggg	13	10	3	0	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_031220	exon20	c.G2699A	p.R900H	ATCATGCGCGAGT		34	3	0.09	35	0	0				0	0					T	6358884	C	T	6358884	3	4	14	1	0	0	0	0	1	0	0	0	11999	768	27	1	229	1	PITPNM3	17	6358884	Missense_Mutation	SNP	C	TCGA-2G-AAFO-01A-31D-A42Y-10	6187752	6358884	74836326	35	881											
ARSG	22901	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	66339910	66339910	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagaggtgctgcagcaggcGggttacgtcactgggataat	16	8	1	1	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	ARSG,colon,carcinoma,+1,1	ARSG	NM_001267727	exon3	c.G384A	p.A128A	GCAGGCGGGTTAC		117	6	0.05	100	0	0		1	1	0	0					A	66339910	G	A	66339910	2	1	14	1	0	0	0	0	0	0	0	1	991	1103	39	1		1	ARSG	17	66339910	Silent	SNP	G	TCGA-2G-AAFO-01A-31D-A42Y-10	59981026	66339910	14855300	36	882											
RAB37	326624	mdanderson.org	37	chr17	72733227	72733227	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccccttcacgcagaccctgCggctctgcgtgccctcaggg	12	18	3	1	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_001163989	exon1	c.C79T	p.R27W	ACCCTGCGGCTCT		45	3	0.07	41	0	0				1	0	0				T	72733227	C	T	72733227	3	4	14	1	0	0	0	0	1	0	0	0	12978	759	27	1	272	1	RAB37	17	72733227	Missense_Mutation	SNP	C	TCGA-2G-AAFO-01A-31D-A42Y-10	6393317	72733227	8461983	37	883											
SLC38A10	124565	mdanderson.org	37	chr17	79257226	79257226	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctgaaacccgaacagccGggcaaagaagttggacccca	10	13	0	2	rs141775697	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_001037984	exon4	c.C340A	p.R114R	ACAGCCGGGCAAA		59	3	0.05	52	0	0				21	0	0				T	79257226	G	T	79257226	2	4	14	1	0	0	0	0	0	0	0	1	14656	1115	39	1		1	SLC38A10	17	79257226	Silent	SNP	G	TCGA-2G-AAFO-01A-31D-A42Y-10	6523999	79257226	1937984	38	884											
MRI1	84245	mdanderson.org	37	chr19	13879176	13879176	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtgtcctttaaacagacgTgaaacggagctatgcgagca	12	8	0	2	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_032285	exon3	c.T375C	p.R125R	CAGACGTGAAACG		55	3	0.05	58	0	0				16	0	0				C	13879176	T	C	13879176	2	2	14	1	0	0	0	0	0	0	0	1	9818	1683	59	4		4	MRI1	19	13879176	Silent	SNP	T	TCGA-2G-AAFO-01A-31D-A42Y-10		13879176	45249807	39	885											
PSG4	5672	mdanderson.org	37	chr19	43699297	43699297	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taccctgggactgacagggaGgctctgaccatttagccacc	11	13	1	2	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_002780	exon4	c.C838A	p.P280T	CAGGGAGGCTCTG		50	3	0.06	58	0	0				0	0					T	43699297	G	T	43699297	3	4	14	1	0	0	0	0	1	0	0	0	12705	1000	35	3	433	3	PSG4	19	43699297	Missense_Mutation	SNP	G	TCGA-2G-AAFO-01A-31D-A42Y-10	29820121	43699297	15429686	40	886											
SYMPK	8189	broad.mit.edu	37	chr19	46321272	46321272	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgaagccccccaggcgggggTacatggtcagggactggatg	17	11	1	0	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	SYMPK	NM_004819	exon23	c.A3026C	p.Y1009S	CGGGGGTACATGG		86	19	0.22	78	12	0.1538461538		104		255	9	0.04				G	46321272	T	G	46321272	3	3	14	1	0	0	0	0	1	0	0	0	15495	1638	57	4	818	4	SYMPK	19	46321272	Missense_Mutation	SNP	T	TCGA-2G-AAFO-01A-31D-A42Y-10	2621975	46321272	12807711	41	887											
GRWD1	83743	mdanderson.org	37	chr19	48956276	48956276	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accatcttccgcaccatcagCgtctgaggcgtcccactggc	9	17	3	1	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_031485	exon7	c.C1335T	p.S445S	CATCAGCGTCTGA		58	3	0.05	63	0	0				109	0	0				T	48956276	C	T	48956276	2	4	14	1	0	0	0	0	0	0	0	1	6851	767	27	1		1	GRWD1	19	48956276	Silent	SNP	C	TCGA-2G-AAFO-01A-31D-A42Y-10	2635004	48956276	10172707	42	888											
AHCY	191	mdanderson.org	37	chr20	32868923	32868923	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttctcagttagcttggtcaActtcacattcagcttgccca	6	13	4	0	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_000687	exon10	c.T1216C	p.L406L	TGGTCAACTTCAC		66	3	0.05	49	0	0				627	1	0				G	32868923	A	G	32868923	2	3	14	1	0	0	0	0	0	0	0	1	406	40	2	4		4	AHCY	20	32868923	Silent	SNP	A	TCGA-2G-AAFO-01A-31D-A42Y-10		32868923	30156597	43	889											
ZNF512B	57473	mdanderson.org	37	chr20	62594604	62594604	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcccatgaggctggagaaGgcagccccgcaaccctgggg	15	13	0	2	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_020713	exon12	c.C1812A	p.A604A	GGAGAAGGCAGCC		19	2	0.11	17	0	0				5	0	0				T	62594604	G	T	62594604	2	4	14	1	0	0	0	0	0	0	0	1	18013	987	35	3		3	ZNF512B	20	62594604	Silent	SNP	G	TCGA-2G-AAFO-01A-31D-A42Y-10	29725681	62594604	430916	44	890											
SOX18	54345	mdanderson.org	37	chr20	62680648	62680648	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgccgcctggcgttccccGcggccggccgggctgaggcc	16	18	1	1	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	NM_018419	exon1	c.C222T	p.R74R	TTCCCCGCGGCCG		43	3	0.07	36	0	0				20	0	0				A	62680648	G	A	62680648	2	1	14	1	0	0	0	0	0	0	0	1	15001	1074	38	1		1	SOX18	20	62680648	Silent	SNP	G	TCGA-2G-AAFO-01A-31D-A42Y-10	86044	62680648	344872	45	891											
BAGE	85319	broad.mit.edu	37	chr21	11058340	11058340	+	RNA	SNP	A	A	C													atcgctgaaaggggtaaaggAgagaaatctctttataaaac					rs28617310		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	.	.	.	.	TAAAGGAGAGAAA		207	8	0.04	206	1	0.0048543689				0	0					C	11058340	A	C	11058340	1	2	14	0	1	0	0	0	0	0	0	0	1289	319	11	4		4	BAGE	21	11058340	RNA	SNP	A	TCGA-2G-AAFO-01A-31D-A42Y-10		11058340	37071555	46	892	2	2									
BAGE	85319	broad.mit.edu	37	chr21	11058348	11058348	+	RNA	SNP	C	C	A													aaggggtaaaggagagaaatCtctttataaaaccttgaaaa					novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	.	.	.	.	.	AGAAATCTCTTTA		180	7	0.04	174	1	0.0057471264				0	0					A	11058348	C	A	11058348	1	1	14	0	1	0	0	0	0	0	0	0	1289	928	32	3		3	BAGE	21	11058348	RNA	SNP	C	TCGA-2G-AAFO-01A-31D-A42Y-10	8	11058348	37071547	47	893	2	2									
PHF21B	112885	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr22	45279175	45279175	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	cagcaggcttgtcttcaactCcaggcatttctgttggggag	12	10	3	0	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	PHF21B	NM_138415	exon13	c.G1387T	p.E463X	TCAACTCCAGGCA		38	5	0.13	41	0	0		61		2	0	0				A	45279175	C	A	45279175	4	1	14	1	0	0	0	0	0	1	0	0	11881	864	30	3	212	3	PHF21B	22	45279175	Nonsense_Mutation	SNP	C	TCGA-2G-AAFO-01A-31D-A42Y-10		45279175	6025391	48	894											
NUDT10	170685	bcgsc.ca	37	chrX	51075767	51075767	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcccggcagcggcagcagcTgcgtcggcggcccacacagc	15	17	0	0	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	NUDT10	.	.	.	.	AGCAGCTGCGTCG		260	20	0.08	154	2	0.012987013		28		12	0	0				A	51075767	T	A	51075767	3	1	14	1	0	0	0	0	1	0	0	0	10773	1595	55	5		5	NUDT10	23	51075767	Missense_Mutation	SNP	T	TCGA-2G-AAFO-01A-31D-A42Y-10		51075767	104194793	49	895											
HMGN5	79366	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	80370324	80370324	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	atcttctttgacttttacatCtttcccctcttttttatctc	1	12	5	1	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	HMGN5	NM_030763	exon7	c.G673T	p.D225Y	TTACATCTTTCCC		329	11	0.03	256	0	0		29		32	0	0				A	80370324	C	A	80370324	3	1	14	1	0	0	0	0	1	0	0	0	7278	913	32	3	179	3	HMGN5	23	80370324	Missense_Mutation	SNP	C	TCGA-2G-AAFO-01A-31D-A42Y-10	29294557	80370324	74900236	50	896											
ELF4	2000	broad.mit.edu	37	chrX	129215228	129215228	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctctgttctctggggccatAcctggtggatatcatcatcc	10	12	4	0	novel		TCGA-2G-AAFO-01A-31D-A42Y-10	TCGA-2G-AAFO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0182096a-fcfd-4c9a-837f-e329734c86f8	2a0fd75c-32f0-4393-a404-dd5568031036	.	ELF4	NM_001421	exon3	c.75+2T>C	.	GGCCATACCTGGT		189	3	0.02	148	0	0		67		0	0					G	129215228	A	G	129215228	5	3	14	1	0	0	0	0	0	0	1	0	5084	405	14	4	1946	4	ELF4	23	129215228	Splice_Site	SNP	A	TCGA-2G-AAFO-01A-31D-A42Y-10	48844904	129215228	26055332	51	897											
KIF1B	23095	broad.mit.edu	37	chr1	10342466	10342466	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atttttccacagcatccatgGggtccctcacttcatcccca	5	16	2	0	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	KIF1B	NM_183416	exon13	c.G1171A	p.G391R	TCCATGGGGTCCC		166	5	0.03	157	0	0		242		13	1	0.08	rescued with RNA-seq			A	10342466	G	A	10342466	3	1	15	1	0	0	0	0	1	0	0	0	8325	1232	43	3	1217	3	KIF1B	1	10342466	Missense_Mutation	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10		10342466	238908155	1	898											
COL16A1	1307	mdanderson.org	37	chr1	32137261	32137261	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctcatgccaggcggaccCtgcaaaggaagccaagggaa	12	14	1	0	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001856	exon49	c.3106-1G>T	.	CGGACCCTGCAAA		87	4	0.05	94	0	0				7	0	0				A	32137261	C	A	32137261	5	1	15	1	0	0	0	0	0	0	1	0	3696	695	24	3	1805	3	COL16A1	1	32137261	Splice_Site	SNP	C	TCGA-2G-AAFV-01A-11D-A42Y-10	21794795	32137261	217113360	2	899											
PTPRF	5792	mdanderson.org	37	chr1	44085236	44085236	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgtgaccgccatggagctcGagttcaaggtggggctcggg	18	9	1	1	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_002840	exon28	c.G4924T	p.E1642X	GAGCTCGAGTTCA		45	3	0.07	56	0	0				252	0	0				T	44085236	G	T	44085236	4	4	15	1	0	0	0	0	0	1	0	0	12852	1059	37	1	5026	1	PTPRF	1	44085236	Nonsense_Mutation	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	11947975	44085236	205165385	3	900											
SSBP3	23648	broad.mit.edu	37	chr1	54871665	54871665	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgagggcaccgccgagcctTtgcctttggcaaacatggtt	12	13	0	0	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	SSBP3	NM_001009955	exon1	c.A17G	p.K6R	GAGCCTTTGCCTT		134	11	0.08	112	1	0.0089285714		65		177	0	0				C	54871665	T	C	54871665	3	2	15	1	0	0	0	0	1	0	0	0	15236	1841	64	4	1221	4	SSBP3	1	54871665	Missense_Mutation	SNP	T	TCGA-2G-AAFV-01A-11D-A42Y-10	10786429	54871665	194378956	4	901											
ACADM	34	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	76228425	76228425	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gacttattgtagcccgtgaaCacattgacaagtacaaaaat	7	8	0	2	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	ACADM	NM_001127328	exon12	c.C1255G	p.H419D	CGTGAACACATTG		405	62	0.15	408	2	0.0049019608		50		98	19	0.19				G	76228425	C	G	76228425	3	3	15	1	0	0	0	0	1	0	0	0	113	478	17	5	1301	5	ACADM	1	76228425	Missense_Mutation	SNP	C	TCGA-2G-AAFV-01A-11D-A42Y-10	21356760	76228425	173022196	5	902											
SCAMP3	10067	mdanderson.org	37	chr1	155230121	155230121	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccccactctattacttacTagctgtgccccccagggcag	7	16	1	0	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_005698	exon4	c.A388G	p.T130A	ACTTACTAGCTGT		84	4	0.05	46	0	0				313	9	0.03				C	155230121	T	C	155230121	3	2	15	1	0	0	0	0	1	0	0	0	13924	1536	53	4	679	4	SCAMP3	1	155230121	Missense_Mutation	SNP	T	TCGA-2G-AAFV-01A-11D-A42Y-10	79001696	155230121	94020500	6	903											
ADORA1	134	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	203098167	203098167	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccctggtcatccccctcgcCatcctcatcaacattgggcc	7	19	3	0	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001048230	exon2	c.C198T	p.A66A	CCTCGCCATCCTC		191	13	0.07	86	0	0				10	0	0				T	203098167	C	T	203098167	2	4	15	1	0	0	0	0	0	0	0	1	325	581	21	3		3	ADORA1	1	203098167	Silent	SNP	C	TCGA-2G-AAFV-01A-11D-A42Y-10	47868046	203098167	46152454	7	904											
DUSP10	11221	broad.mit.edu	37	chr1	221879723	221879723	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagctcgaggccgcggatgcGccgccccccacctcccggca	12	20	0	0	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	DUSP10,NS,carcinoma,0,1	DUSP10	NM_007207	exon3	c.C897T	p.G299G	GGATGCGCCGCCC		221	6	0.03	177	0	0		64	1	9	0	0				A	221879723	G	A	221879723	2	1	15	1	0	0	0	0	0	0	0	1	4836	1074	38	1		1	DUSP10	1	221879723	Silent	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	18781556	221879723	27370898	8	905											
KIF26B	55083	mdanderson.org	37	chr1	245851505	245851505	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtgagcagactcctcctGgccagccccagagcgcgcgg	14	17	0	3	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_018012	exon12	c.G5220T	p.L1740L	CCTCCTGGCCAGC		31	3	0.1	20	0	0				9	0	0				T	245851505	G	T	245851505	2	4	15	1	0	0	0	0	0	0	0	1	8336	1335	47	3		3	KIF26B	1	245851505	Silent	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	23971782	245851505	3399116	9	906											
KDM3A	55818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	86707433	86707433	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtccagccagcacatctccTctaaactggctggccgacct	8	16	2	0	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001146688	exon16	c.T2460C	p.P820P	ATCTCCTCTAAAC		79	6	0.08	75	0	0				69	8	0.12				C	86707433	T	C	86707433	2	2	15	1	0	0	0	0	0	0	0	1	8169	1538	54	4		4	KDM3A	2	86707433	Silent	SNP	T	TCGA-2G-AAFV-01A-11D-A42Y-10		86707433	156491940	10	907											
NCAPH	23397	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr2	97033084	97033084	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtggagtctgctgacagcGctctccggaaaggaggcaga	15	9	2	2	rs149403246	alternate_allele	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_015341	exon15	c.G1971T	p.A657A	GACAGCGCTCTCC		121	5	0.04	94	0	0				121	0	0				T	97033084	G	T	97033084	2	4	15	1	0	0	0	0	0	0	0	1	10255	1074	38	1		1	NCAPH	2	97033084	Silent	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	10325651	97033084	146166289	11	908											
NPAS2	4862	mdanderson.org	37	chr2	101587513	101587513	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaagacccgccatccgagGccctccactcctcagcacta	8	18	1	1	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_002518	exon12	c.G1117T	p.A373S	TCCGAGGCCCTCC		130	5	0.04	105	0	0				5	0	0				T	101587513	G	T	101587513	3	4	15	1	0	0	0	0	1	0	0	0	10609	1203	42	2	1159	2	NPAS2	2	101587513	Missense_Mutation	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	4554429	101587513	141611860	12	909											
SH3RF3	344558	broad.mit.edu	37	chr2	110065794	110065794	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgtgcccacggccggccaTccccctcacatcagcagcat	9	18	2	0	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	SH3RF3	NM_001099289	exon8	c.T1997C	p.I666T	CGGCCATCCCCCT		337	5	0.01	265	4	0.0150943396		62		3	0	0				C	110065794	T	C	110065794	3	2	15	1	0	0	0	0	1	0	0	0	14314	1435	50	4	2027	4	SH3RF3	2	110065794	Missense_Mutation	SNP	T	TCGA-2G-AAFV-01A-11D-A42Y-10	8478281	110065794	133133579	13	910											
TTN	7273	mdanderson.org	37	chr2	179490019	179490019	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctttcacaaagaggttggcGtgagttttgaaatcttttgc	10	7	2	3	rs55973744	bycluster;byfrequency;by1000genomes	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001267550	exon241	c.C44529T	p.H14843H	GTTGGCGTGAGTT		54	3	0.06	61	0	0	0.01			1	0	0				A	179490019	G	A	179490019	2	1	15	1	0	0	0	0	0	0	0	1	16796	1136	40	1		1	TTN	2	179490019	Silent	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	69424225	179490019	63709354	14	911											
DNAH7	56171	mdanderson.org	37	chr2	196682528	196682528	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcttgcattccctcagggGttatcatgaagtttaataat	8	7	3	1	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_018897	exon50	c.C9317A	p.T3106N	TCAGGGGTTATCA		109	5	0.05	64	0	0				3	0	0				T	196682528	G	T	196682528	3	4	15	1	0	0	0	0	1	0	0	0	4633	1261	44	3	2821	3	DNAH7	2	196682528	Missense_Mutation	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	17192509	196682528	46516845	15	912											
C2orf62	375307	mdanderson.org	37	chr2	219227558	219227558	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggtgatggcctggcggcGgatggtgcccagcaatgccc	17	12	0	1	rs201618489	by1000genomes;alternate_allele	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	C2orf62,NS,carcinoma,+1,1	C2orf62	NM_198559	exon6	c.G563T	p.R188L	GGCGGCGGATGGT		44	3	0.07	27	0	0		1	1	11	0	0				T	219227558	G	T	219227558	3	4	15	1	0	0	0	0	1	0	0	0	2195	1116	39	1	585	1	C2orf62	2	219227558	Missense_Mutation	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	22545030	219227558	23971815	16	913											
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	230668944	230668944	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctttgactctgaatatccacCtattacattaaaaaaaaata	2	8	1	2	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_004238	exon19	c.2426-1G>C	.	ATCCACCTATTAC		258	36	0.14	243	0	0				1	1	1				G	230668944	C	G	230668944	5	3	15	1	0	0	0	0	0	0	1	0	16616	695	24	5	3649	5	TRIP12	2	230668944	Splice_Site	SNP	C	TCGA-2G-AAFV-01A-11D-A42Y-10	11441386	230668944	12530429	17	914											
CAND2	23066	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	12856660	12856660	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agagtgaagacgagtacagcGatgacgatgacatgagctgg	15	6	0	6	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	CAND2	NM_001162499	exon8	c.G1027A	p.D343N	TACAGCGATGACG		113	22	0.19	73	1	0.0136986301		138		22	1	0.05				A	12856660	G	A	12856660	3	1	15	1	0	0	0	0	1	0	0	0	2634	1058	37	1	1057	1	CAND2	3	12856660	Missense_Mutation	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10		12856660	185165770	18	915											
TEX264	51368	mdanderson.org	37	chr3	51737954	51737954	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcccttaggggagtcacgGctggaccctgggactgagcc	17	12	1	1	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_015926	exon5	c.G864T	p.R288R	GTCACGGCTGGAC		46	3	0.07	31	0	0				168	0	0				T	51737954	G	T	51737954	2	4	15	1	0	0	0	0	0	0	0	1	15841	1190	42	2		2	TEX264	3	51737954	Silent	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	38881294	51737954	146284476	19	916											
ARMC8	25852	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	137942567	137942567	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcactccagaggagctaCtgtatacagtgagttttaga	10	8	1	3	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	ARMC8	NM_001267041	exon5	c.C427T	p.L143L	GAGCTACTGTATA		99	17	0.17	83	1	0.0120481928		79		55	16	0.29				T	137942567	C	T	137942567	2	4	15	1	0	0	0	0	0	0	0	1	956	564	20	3		3	ARMC8	3	137942567	Silent	SNP	C	TCGA-2G-AAFV-01A-11D-A42Y-10	86204613	137942567	60079863	20	917											
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	44449883	44449883	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcggcctggttgtcgcgcaCggtggtgtaggagccccggt	18	11	0	0	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_198353	exon1	c.G658C	p.V220L	CGCGCACGGTGGT		29	9	0.31	29	0	0				0	0					G	44449883	C	G	44449883	3	3	15	1	0	0	0	0	1	0	0	0	8158	536	19	5	771	5	KCTD8	4	44449883	Missense_Mutation	SNP	C	TCGA-2G-AAFV-01A-11D-A42Y-10		44449883	146704393	21	918											
BANK1	55024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	102839288	102839288	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tatggagggttcagaccccgCacatattgctgaaaggcatg	12	9	1	2	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_017935	exon7	c.C1148A	p.A383E	ACCCCGCACATAT		195	9	0.05	247	0	0				0	0					A	102839288	C	A	102839288	3	1	15	1	0	0	0	0	1	0	0	0	1307	710	25	2	1174	2	BANK1	4	102839288	Missense_Mutation	SNP	C	TCGA-2G-AAFV-01A-11D-A42Y-10	58389405	102839288	88314988	22	919											
PHF17	79960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	129789057	129789057	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcagggaaaagattaaacGgtctgtgtgcaaagtccagg	13	8	1	1	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_199320	exon10	c.G1550T	p.R517L	TTAAACGGTCTGT		63	12	0.19	75	0	0				18	4	0.22				T	129789057	G	T	129789057	3	4	15	1	0	0	0	0	1	0	0	0	11875	1116	39	1	1611	1	PHF17	4	129789057	Missense_Mutation	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	26949769	129789057	61365219	23	920											
MDC1	9656	broad.mit.edu	37	chr6	30673315	30673315	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaggtgacaggtcggtcGgtggaggtggaaggctggag	21	5	1	2	rs149345627	bycluster;byfrequency;alternate_allele	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	MDC1	NM_014641	exon10	c.C3645A	p.T1215T	TCGGTCGGTGGAG		147	4	0.03	158	1	0.0063291139		218		79	0	0				T	30673315	G	T	30673315	2	4	15	1	0	0	0	0	0	0	0	1	9452	1103	39	1		1	MDC1	6	30673315	Silent	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10		30673315	140441752	24	921											
BRD2	6046	mdanderson.org	37	chr6	32942516	32942516	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catggccattccggcagcctGtggatgctgtcaaactgggt	13	11	1	0	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001113182	exon3	c.G307T	p.V103L	CAGCCTGTGGATG		35	3	0.09	38	0	0				206	0	0				T	32942516	G	T	32942516	3	4	15	1	0	0	0	0	1	0	0	0	1504	1377	48	3	313	3	BRD2	6	32942516	Missense_Mutation	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	2269201	32942516	138172551	25	922											
MCM3	4172	mdanderson.org	37	chr6	52141940	52141940	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagtggtggggatagctcGgggtgcagtgcaaagcacat	17	8	0	0	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_002388	exon8	c.C1225A	p.R409R	TAGCTCGGGGTGC		53	3	0.06	52	0	0				305	0	0				T	52141940	G	T	52141940	2	4	15	1	0	0	0	0	0	0	0	1	9436	1124	39	1		1	MCM3	6	52141940	Silent	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	19199424	52141940	118973127	26	923											
ULBP2	80328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	150267564	150267564	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaagctgaaggacacagcAgtggatcttggcagttcagt	13	7	2	2	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_025217	exon3	c.A406T	p.S136C	CACAGCAGTGGAT		84	11	0.13	170	0	0				0	0					T	150267564	A	T	150267564	3	4	15	1	0	0	0	0	1	0	0	0	17032	188	7	5	416	5	ULBP2	6	150267564	Missense_Mutation	SNP	A	TCGA-2G-AAFV-01A-11D-A42Y-10	98125624	150267564	20847503	27	924											
KIAA1324L	222223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	86577164	86577164	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgatgccactgcccaaggAataggtgccttcaccacact	8	13	1	1	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001142749	exon3	c.T385G	p.S129A	CCAAGGAATAGGT		151	41	0.27	140	0	0				28	14	0.5				C	86577164	A	C	86577164	3	2	15	1	0	0	0	0	1	0	0	0	8265	246	9	4	2784	4	KIAA1324L	7	86577164	Missense_Mutation	SNP	A	TCGA-2G-AAFV-01A-11D-A42Y-10		86577164	72561499	28	925											
MUC17	140453	ucsc.edu	37	chr7	100680100	100680100	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtaccagcataccaacctcGactcttagtgaaggaatgac	9	11	1	2	rs142682652	byfrequency	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	MUC17	NM_001040105	exon3	c.G5403A	p.S1801S	AACCTCGACTCTT		162	22	0.14	115	4	0.0347826087		804		0	0					A	100680100	G	A	100680100	2	1	15	1	0	0	0	0	0	0	0	1	10021	1045	37	1		1	MUC17	7	100680100	Silent	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	14102936	100680100	58458563	29	926			1	5		3	3	1246	N	T_G	3.952126e-06
MUC17	140453	ucsc.edu;bcgsc.ca	37	chr7	100680117	100680117	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcgactcttagtgaaggaaTgactccattaacaagcacac	7	11	1	2	rs147353603	bycluster;byfrequency	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	MUC17	NM_001040105	exon3	c.T5420C	p.M1807T	AAGGAATGACTCC		169	31	0.18	112	3	0.0267857143		804		0	0					C	100680117	T	C	100680117	3	2	15	1	0	0	0	0	1	0	0	0	10021	1464	51	4	5430	4	MUC17	7	100680117	Missense_Mutation	SNP	T	TCGA-2G-AAFV-01A-11D-A42Y-10	17	100680117	58458546	30	927			1	5		3	3	1246	N	T_G	3.952126e-06
MUC17	140453	mdanderson.org	37	chr7	100681345	100681345	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atgccaacctcaactcctagTgaaggaagcactccattcac	6	14	2	1	rs142097516	bycluster	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001040105	exon3	c.T6648G	p.S2216R	TCCTAGTGAAGGA		154	8	0.05	79	0	0				0	0					G	100681345	T	G	100681345	3	3	15	1	0	0	0	0	1	0	0	0	10021	1693	59	4	6658	4	MUC17	7	100681345	Missense_Mutation	SNP	T	TCGA-2G-AAFV-01A-11D-A42Y-10	1228	100681345	58457318	31	928			1	5		3	3	1246	N	T_G	3.952126e-06
CUX1	1523	mdanderson.org	37	chr7	101891810	101891810	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cggcgcccagctcggagggcGacagctgcgacggcgtggag	19	13	0	0	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001202543	exon24	c.G4039T	p.D1347Y	GAGGGCGACAGCT		33	3	0.09	19	0	0				2	0	0				T	101891810	G	T	101891810	3	4	15	1	0	0	0	0	1	0	0	0	4087	1058	37	1	4167	1	CUX1	7	101891810	Missense_Mutation	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	1210465	101891810	57246853	32	929											
PPP2R2A	5520	mdanderson.org	37	chr8	26217714	26217714	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	taaaattatggaaaatcagtGaaagggacaaaagaccagaa	9	4	1	3	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001177591	exon5	c.G406T	p.E136X	ATCAGTGAAAGGG		45	3	0.07	50	0	0				120	0	0				T	26217714	G	T	26217714	4	4	15	1	0	0	0	0	0	1	0	0	12432	1291	45	3	435	3	PPP2R2A	8	26217714	Nonsense_Mutation	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10		26217714	120146308	33	930											
ARFGEF1	10565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	68208839	68208839	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgatgttactgcagtaaGtaaagcctttaagaaaaaaa	8	4	0	2	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	ARFGEF1,NS,carcinoma,+1,1	ARFGEF1	NM_006421	exon5	c.C466T	p.L156F	CAGTAAGTAAAGC		97	20	0.21	97	0	0		1	1	10	3	0.3				A	68208839	G	A	68208839	3	1	15	1	0	0	0	0	1	0	0	0	849	1029	36	3	5223	3	ARFGEF1	8	68208839	Missense_Mutation	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	41991125	68208839	78155183	34	931											
CAMK1D	57118	mdanderson.org	37	chr10	12595239	12595239	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacagcggggccttttccgaAgtggttttagctgaagagaa	13	8	0	2	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	CAMK1D_ENST00000378847,NS,malignant_melanoma,+2,6	CAMK1D_ENST00000378847	NM_153498	exon2	c.A108G	p.E36E	TTCCGAAGTGGTT		49	3	0.06	74	0	0		2	6	2	0	0				G	12595239	A	G	12595239	2	3	15	1	0	0	0	0	0	0	0	1	2615	69	3	4		4	CAMK1D	10	12595239	Silent	SNP	A	TCGA-2G-AAFV-01A-11D-A42Y-10		12595239	122939508	35	932											
DBX1	120237	mdanderson.org	37	chr11	20181777	20181777	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggagtggccggaaaatgCcgactgcaaggactggggca	17	9	0	0	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001029865	exon1	c.G94A	p.A32T	AAAATGCCGACTG		36	3	0.08	21	0	0				0	0					T	20181777	C	T	20181777	3	4	15	1	0	0	0	0	1	0	0	0	4283	739	26	2	1070	2	DBX1	11	20181777	Missense_Mutation	SNP	C	TCGA-2G-AAFV-01A-11D-A42Y-10		20181777	114824739	36	933											
SLC1A2	6506	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	35440503	35440503	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaatcccctcacccttccGtagatgccatggtctgggga	9	13	2	1	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_004171	exon1	c.C11T	p.T4M	CCTTCCGTAGATG		160	47	0.29	169	0	0				0	0					A	35440503	G	A	35440503	3	1	15	1	0	0	0	0	1	0	0	0	14486	1145	40	1	1757	1	SLC1A2	11	35440503	Missense_Mutation	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	15258726	35440503	99566013	37	934											
DLG2	1740	hgsc.bcm.edu	37	chr11	83544668	83544668	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catactcaccgataggatctGgtctcctctctggagctccc	8	15	4	0	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	DLG2_ENST00000418306,NS,carcinoma,+1,8	DLG2_ENST00000418306	NM_001142699	exon17	c.C1711A	p.Q571K	GGATCTGGTCTCC		86	5	0.06	91	0	0		1	8	0	0					T	83544668	G	T	83544668	3	4	15	1	0	0	0	0	1	0	0	0	4583	1357	47	3	1314	3	DLG2	11	83544668	Missense_Mutation	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	48104165	83544668	51461848	38	935											
NOP2	4839	broad.mit.edu	37	chr12	6666318	6666318	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcaaaaggctgctctggCaactgctgcttctcaacccc	7	15	3	0	rs2534700	bycluster;byhapmap;alternate_allele	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	NOP2	NM_001258309	exon17	c.G2379T	p.L793F	CTCTGGCAACTGC		546	10	0.02	228	0	0		44		507	13	0.03				A	6666318	C	A	6666318	3	1	15	1	0	0	0	0	1	0	0	0	10584	709	25	2	162	2	NOP2	12	6666318	Missense_Mutation	SNP	C	TCGA-2G-AAFV-01A-11D-A42Y-10		6666318	127185577	39	936											
C12orf40	283461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	40076502	40076502	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaataagacagtcagactAcattactgaaaaacactcaa	5	8	2	4	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	C12orf40,NS,carcinoma,+1,1	C12orf40	NM_001031748	exon8	c.A776G	p.Y259C	CAGACTACATTAC		101	24	0.24	79	0	0		1	1	0	0					G	40076502	A	G	40076502	3	3	15	1	0	0	0	0	1	0	0	0	1692	391	14	4	806	4	C12orf40	12	40076502	Missense_Mutation	SNP	A	TCGA-2G-AAFV-01A-11D-A42Y-10	33410184	40076502	93775393	40	937											
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	40757322	40757322	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggataagaaaactgaaaaaCtctgtggactaatagactgc	10	6	1	3	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_198578	exon48	c.C7147T	p.L2383F	GAAAAACTCTGTG		131	32	0.24	118	0	0				6	0	0				T	40757322	C	T	40757322	3	4	15	1	0	0	0	0	1	0	0	0	9077	565	20	3	7337	3	LRRK2	12	40757322	Missense_Mutation	SNP	C	TCGA-2G-AAFV-01A-11D-A42Y-10	680820	40757322	93094573	41	938											
CLIP1	6249	mdanderson.org	37	chr12	122819222	122819222	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acttctctgaacagagactgCctcctctgaagcttcagcaa	7	13	3	3	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001247997	exon13	c.G2599A	p.A867T	AGACTGCCTCCTC		40	3	0.08	25	0	0				36	0	0				T	122819222	C	T	122819222	3	4	15	1	0	0	0	0	1	0	0	0	3555	739	26	2	1773	2	CLIP1	12	122819222	Missense_Mutation	SNP	C	TCGA-2G-AAFV-01A-11D-A42Y-10	82061900	122819222	11032673	42	939											
ATP8A2	51761	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	26133183	26133183	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actttaagaagtgcagcattGccggagtaacctatgggtca	11	8	1	1	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	ATP8A2	NM_016529	exon14	c.G1336T	p.A446S	AGCATTGCCGGAG		71	7	0.1	90	0	0		181		0	0					T	26133183	G	T	26133183	3	4	15	1	0	0	0	0	1	0	0	0	1191	1319	46	2	1390	2	ATP8A2	13	26133183	Missense_Mutation	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10		26133183	89036695	43	940											
CPNE6	9362	broad.mit.edu	37	chr14	24546820	24546820	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggctgccccctctgcactcGccaagtgtgtcctggctgag	12	15	1	1	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	CPNE6,NS,carcinoma,0,1	CPNE6	NM_006032	exon16	c.G1555A	p.A519T	GCACTCGCCAAGT		99	4	0.04	107	1	0.0093457944		40	1	8	0	0				A	24546820	G	A	24546820	3	1	15	1	0	0	0	0	1	0	0	0	3839	1087	38	1	1613	1	CPNE6	14	24546820	Missense_Mutation	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10		24546820	82802720	44	941											
RALGAPA1	253959	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	36194331	36194332	+	Frame_Shift_Del	DEL	CT	CT	-													cttcagtacagattccgtgaCtctgagcaacacaagcagca					novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	CT	CT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	RALGAPA1	NM_014990	exon14	c.1765_1766del	p.589_589del	CCGTGACTCTGAG		241	38	0.16	195	0	0		289		11	0	0				-	36194332	CT	-	36194331	7	5	15	1	0	1	0	1	0	0	0	0	13064	565	20	0	4606	0	RALGAPA1	14	36194331	Frame_Shift_Del	DEL	CT	TCGA-2G-AAFV-01A-11D-A42Y-10	11647511	36194331	71155209	45	942											
ZFYVE19	84936	mdanderson.org	37	chr15	41104995	41104995	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaggagaagagcagactgCtggctgaggcagcacttgag	17	7	0	5	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001077268	exon7	c.C925T	p.L309L	AGACTGCTGGCTG		38	3	0.08	30	0	0				43	0	0				T	41104995	C	T	41104995	2	4	15	1	0	0	0	0	0	0	0	1	17722	796	28	2		2	ZFYVE19	15	41104995	Silent	SNP	C	TCGA-2G-AAFV-01A-11D-A42Y-10		41104995	61426397	46	943											
ONECUT1	3175	broad.mit.edu	37	chr15	53082011	53082011	+	Frame_Shift_Del	DEL	G	G	-													tgccgcccagcaggtcggcaGgggcgggcaccggctcatgg					novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	ONECUT1	NM_004498	exon1	c.71delC	p.P24fs	TCGGCAGGGGCGG		6	2	0.33	4	0	0		48		1	0	0				-	53082011	G	-	53082011	7	5	15	1	0	1	0	1	0	0	0	0	10915	1000	35	0	1334	0	ONECUT1	15	53082011	Frame_Shift_Del	DEL	G	TCGA-2G-AAFV-01A-11D-A42Y-10	11977016	53082011	49449381	47	944											
ACSM3	6296	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	20796358	20796358	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgctggggaaccaattaccCctgacgtgactgaaaaatgg	12	9	0	3	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_005622	exon8	c.C1072T	p.P358S	ATTACCCCTGACG		80	7	0.09	99	0	0				19	2	0.11				T	20796358	C	T	20796358	3	4	15	1	0	0	0	0	1	0	0	0	185	623	22	3	1098	3	ACSM3	16	20796358	Missense_Mutation	SNP	C	TCGA-2G-AAFV-01A-11D-A42Y-10		20796358	69558395	48	945											
TGFB1I1	7041	mdanderson.org	37	chr16	31484827	31484827	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcaggggctcccaaagagCgccctgcggagcctctcacc	13	16	2	1	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	TGFB1I1_ENST00000394863,NS,carcinoma,0,2	TGFB1I1_ENST00000394863	NM_001042454	exon2	c.C79T	p.R27C	AAAGAGCGCCCTG		46	3	0.07	60	0	0		0	2	54	0	0				T	31484827	C	T	31484827	3	4	15	1	0	0	0	0	1	0	0	0	15876	768	27	1	85	1	TGFB1I1	16	31484827	Missense_Mutation	SNP	C	TCGA-2G-AAFV-01A-11D-A42Y-10	10688469	31484827	58869926	49	946											
COG4	25839	hgsc.bcm.edu	37	chr16	70515315	70515315	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccgggcaaacttgtctcGgatggtccaggtggtcaccg	15	11	2	0	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_015386	exon18	c.C2182A	p.R728R	TGTCTCGGATGGT		74	4	0.05	89	0	0				162	0	0				T	70515315	G	T	70515315	2	4	15	1	0	0	0	0	0	0	0	1	3683	1124	39	1		1	COG4	16	70515315	Silent	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	39030488	70515315	19839438	50	947											
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	4016010	4016010	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctggcattcctccctacaGctactgtcacctgctgtggc	9	16	1	0	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_015113	exon5	c.C959T	p.A320V	CCTACAGCTACTG		118	8	0.07	121	0	0				8	0	0				A	4016010	G	A	4016010	3	1	15	1	0	0	0	0	1	0	0	0	18294	971	34	2	8130	2	ZZEF1	17	4016010	Missense_Mutation	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10		4016010	77179200	51	948											
MRPL45	84311	broad.mit.edu	37	chr17	36453192	36453192	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggttctcttgtttatcgaggTttttgggctggtggtttcgg	15	5	1	0	rs9890011	bycluster;by2hit2allele	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	MRPL45	NM_032351	exon1	c.T43G	p.F15V	TCGAGGTTTTTGG		93	14	0.15	69	1	0.0144927536		27		123	6	0.05				G	36453192	T	G	36453192	3	3	15	1	0	0	0	0	1	0	0	0	9857	1725	60	4		4	MRPL45	17	36453192	Missense_Mutation	SNP	T	TCGA-2G-AAFV-01A-11D-A42Y-10	32437182	36453192	44742018	52	949											
MRC2	9902	broad.mit.edu	37	chr17	60769610	60769610	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgcttccagagaacccagCggccctggtggtggtgctga	15	12	0	2	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	MRC2	NM_006039	exon30	c.C4238T	p.A1413V	ACCCAGCGGCCCT		155	4	0.03	124	2	0.0161290323		126		244	0	0				T	60769610	C	T	60769610	3	4	15	1	0	0	0	0	1	0	0	0	9806	768	27	1	4356	1	MRC2	17	60769610	Missense_Mutation	SNP	C	TCGA-2G-AAFV-01A-11D-A42Y-10	24316418	60769610	20425600	53	950											
CD79B	974	mdanderson.org	37	chr17	62007156	62007156	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcagcaggaagataggcaCgatgatgaagaggatgatca	14	6	1	5	rs148032848	alternate_allele	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	CD79B,colon,carcinoma,0,1	CD79B	NM_001039933	exon4	c.G526T	p.V176L	TAGGCACGATGAT		26	2	0.08	19	0	0		0	1	15	0	0				A	62007156	C	A	62007156	3	1	15	1	0	0	0	0	1	0	0	0	3059	536	19	1	178	1	CD79B	17	62007156	Missense_Mutation	SNP	C	TCGA-2G-AAFV-01A-11D-A42Y-10	1237546	62007156	19188054	54	951											
AP3D1	8943	mdanderson.org	37	chr19	2121000	2121000	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacttgcggatggccttcaCgcggatggccacgtccagca	13	13	1	0	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001261826	exon14	c.G1342A	p.V448M	CCTTCACGCGGAT		38	3	0.08	33	0	0				160	0	0				T	2121000	C	T	2121000	3	4	15	1	0	0	0	0	1	0	0	0	742	536	19	1	2345	1	AP3D1	19	2121000	Missense_Mutation	SNP	C	TCGA-2G-AAFV-01A-11D-A42Y-10		2121000	57007983	55	952											
LINGO3	645191	mdanderson.org	37	chr19	2291166	2291166	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggccaggtggcgcagccGcagggcgcccaggctgcgca	18	14	0	0	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001101391	exon2	c.C610A	p.R204R	GCAGCCGCAGGGC		40	3	0.08	28	0	0				1	0	0				T	2291166	G	T	2291166	2	4	15	1	0	0	0	0	0	0	0	1	8856	1086	38	1		1	LINGO3	19	2291166	Silent	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	170166	2291166	56837817	56	953											
PNPLA6	10908	broad.mit.edu	37	chr19	7626396	7626396	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggagaagtcgattctccGgcaacgacgctgtctgcccc	13	13	2	1	rs368661376		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	PNPLA6	NM_001166111	exon34	c.G4076A	p.R1359Q	TTCTCCGGCAACG		82	5	0.06	54	0	0		163		69	0	0				A	7626396	G	A	7626396	3	1	15	1	0	0	0	0	1	0	0	0	12216	1116	39	1	4206	1	PNPLA6	19	7626396	Missense_Mutation	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	5335230	7626396	51502587	57	954											
ASNA1	439	mdanderson.org	37	chr19	12856212	12856212	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agattgaccccagcctgggcGtggcggagctgcctgacgag	16	12	0	3	rs373752704	alternate_allele	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_004317	exon3	c.G331T	p.V111L	CTGGGCGTGGCGG		30	3	0.1	29	0	0				430	0	0				T	12856212	G	T	12856212	3	4	15	1	0	0	0	0	1	0	0	0	1046	1145	40	1	341	1	ASNA1	19	12856212	Missense_Mutation	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	5229816	12856212	46272771	58	955											
CPAMD8	27151	mdanderson.org	37	chr19	17004142	17004142	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacaggaggccgaggcccgGctgtgaccctggagatgagg	17	11	1	3	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_015692	exon42	c.C5576T	p.A1859V	GGCCCGGCTGTGA		15	2	0.13	22	0	0				3	0	0				A	17004142	G	A	17004142	3	1	15	1	0	0	0	0	1	0	0	0	3818	1203	42	2	226	2	CPAMD8	19	17004142	Missense_Mutation	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	4147930	17004142	42124841	59	956											
MAG	4099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	35800891	35800891	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcctttgagctgccatcgcGcaatgtgaccgtgaacgaga	13	11	0	4	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_080600	exon8	c.G1346A	p.R449H	CATCGCGCAATGT		79	11	0.14	50	0	0				7	0	0				A	35800891	G	A	35800891	3	1	15	1	0	0	0	0	1	0	0	0	9207	1087	38	1	1368	1	MAG	19	35800891	Missense_Mutation	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	18796749	35800891	23328092	60	957											
DHDH	27294	mdanderson.org	37	chr19	49438356	49438356	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cctatgaggagctggccaagGacccgagcgtgggtgagtgg	18	9	0	2	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_014475	exon2	c.G190T	p.D64Y	GCCAAGGACCCGA		33	3	0.09	24	0	0				0	0					T	49438356	G	T	49438356	3	4	15	1	0	0	0	0	1	0	0	0	4507	1174	41	3	196	3	DHDH	19	49438356	Missense_Mutation	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	13637465	49438356	9690627	61	958											
ZIM3	0	broad.mit.edu	37	chr19	57649920	57649920	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgggattcagccgctgccacTccccctgggtgaagttcaca	11	15	2	1	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	ZIM3	NM_052882	exon3	c.A62G	p.E21G	TGCCACTCCCCCT		90	4	0.04	98	0	0		107		0	0					C	57649920	T	C	57649920	3	2	15	1	0	0	0	0	1	0	0	0	17742	1551	54	4	1368	4	ZIM3	19	57649920	Missense_Mutation	SNP	T	TCGA-2G-AAFV-01A-11D-A42Y-10	8211564	57649920	1479063	62	959											
PDYN	5173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	1961480	1961480	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agggcccttccccaaccgacTtgctccccaagtcctccttg	7	19	0	0	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_001190898	exon4	c.A254C	p.K85T	ACCGACTTGCTCC		144	48	0.33	177	0	0				0	0					G	1961480	T	G	1961480	3	3	15	1	0	0	0	0	1	0	0	0	11745	1609	56	4	514	4	PDYN	20	1961480	Missense_Mutation	SNP	T	TCGA-2G-AAFV-01A-11D-A42Y-10		1961480	61064040	63	960											
PLCB1	23236	mdanderson.org	37	chr20	8705341	8705341	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctatggccacagaagaaatGtctaatctggtgaactatat	9	7	2	3	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_015192	exon16	c.C1620T	p.G540G	AGAAATGTCTAAT		71	4	0.06	77	0	0				9	0	0				T	8705341	G	T	8705341	2	4	15	1	0	0	0	0	0	0	0	1	12074	1377	48	3		3	PLCB1	20	8705341	Silent	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	6743861	8705341	54320179	64	961											
TOP1	7150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	39751878	39751894	+	Frame_Shift_Del	DEL	ACCCAGCGGGAGAAGTT	ACCCAGCGGGAGAAGTT	-													ttgagaagatttacaacaaaAcccagcgggagaagtttgcc					novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	ACCCAGCGGGAGAAGTT	ACCCAGCGGGAGAAGTT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	TOP1	NM_003286	exon21	c.2238_2254del	p.746_752del	AACAAAACCCAGC		94	18	0.19	129	0	0		71		317	0	0				-	39751894	ACCCAGCGGGAGAAGTT	-	39751878	7	5	15	1	0	1	0	1	0	0	0	0	16423	43	2	0	2321	0	TOP1	20	39751878	Frame_Shift_Del	DEL	ACCCAGCGGGAGAAGTT	TCGA-2G-AAFV-01A-11D-A42Y-10	31046537	39751878	23273642	65	962											
SLC17A9	63910	mdanderson.org	37	chr20	61584208	61584208	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccacccccagacgaggcccGcagggacatggccggggaca	15	16	0	1	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_022082	exon1	c.G26A	p.R9H	AGGCCCGCAGGGA		18	3	0.17	15	0	0				6	0	0				A	61584208	G	A	61584208	3	1	15	1	0	0	0	0	1	0	0	0	14478	1087	38	1	28	1	SLC17A9	20	61584208	Missense_Mutation	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10	21832330	61584208	1441312	66	963											
SLC7A4	6545	mdanderson.org	37	chr22	21383511	21383511	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgccatagccgaaatacaCtgcaagtcctagacagggca	10	11	0	1	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	.	NM_004173	exon5	c.G1741A	p.V581M	AATACACTGCAAG		29	3	0.1	48	0	0				29	0	0				T	21383511	C	T	21383511	3	4	15	1	0	0	0	0	1	0	0	0	14753	565	20	3	170	3	SLC7A4	22	21383511	Missense_Mutation	SNP	C	TCGA-2G-AAFV-01A-11D-A42Y-10		21383511	29921055	67	964											
SUN2	25777	broad.mit.edu	37	chr22	39132280	39132280	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtaagcagggctagtgggCgggctccccatgcactctga	14	12	1	1	rs200715757	bycluster;by1000genomes	TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	SUN2	NM_001199579	exon18	c.G2209A	p.A737T	AGTGGGCGGGCTC		64	5	0.08	75	0	0		59		148	6	0.04				T	39132280	C	T	39132280	3	4	15	1	0	0	0	0	1	0	0	0	15447	768	27	1	11	1	SUN2	22	39132280	Missense_Mutation	SNP	C	TCGA-2G-AAFV-01A-11D-A42Y-10	17748769	39132280	12172286	68	965											
ERCC6L	54821	broad.mit.edu	37	chrX	71425589	71425589	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaactactacttcttctgGttcatcgtctttctcagaaa	4	10	5	1	novel		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	ERCC6L	NM_017669	exon2	c.C3028A	p.P1010T	CTTCTGGTTCATC		107	5	0.05	63	0	0		98		50	0	0				T	71425589	G	T	71425589	3	4	15	1	0	0	0	0	1	0	0	0	5246	1261	44	3	728	3	ERCC6L	23	71425589	Missense_Mutation	SNP	G	TCGA-2G-AAFV-01A-11D-A42Y-10		71425589	83844971	69	966											
CTAG2	30848	broad.mit.edu	37	chrX	153881676	153881676	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacctctgccgcccgtggcAcccgcctctcctgggccgcc	12	21	2	0	rs370709312		TCGA-2G-AAFV-01A-11D-A42Y-10	TCGA-2G-AAFV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af03ea8a-e355-49cc-bc41-4ff2e2920c39	db466af1-f94e-426c-96ca-b7273aa85239	.	CTAG2	NM_020994	exon1	c.T114G	p.G38G	CGTGGCACCCGCC		92	35	0.38	40	19	0.475		88		0	0					C	153881676	A	C	153881676	2	2	15	1	0	0	0	0	0	0	0	1	4016	146	6	4		4	CTAG2	23	153881676	Silent	SNP	A	TCGA-2G-AAFV-01A-11D-A42Y-10	82456087	153881676	1388884	70	967											
SLC1A7	6512	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	53580475	53580475	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagctcatgatgggcttcCcactctgctccgtggtctcc	10	15	3	2	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_006671	exon3	c.G386A	p.G129E	GGCTTCCCACTCT		140	8	0.06	89	0	0				2	0	0				T	53580475	C	T	53580475	3	4	16	1	0	0	0	0	1	0	0	0	14491	623	22	3	1332	3	SLC1A7	1	53580475	Missense_Mutation	SNP	C	TCGA-2G-AAFY-01A-11D-A42Y-10		53580475	195670146	1	968											
PRELP	5549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	203453089	203453089	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagattgagaccatccctaaCggatacttcaagagctttcc	7	11	1	3	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	PRELP,caecum,carcinoma,0,1	PRELP	NM_201348	exon2	c.C777T	p.N259N	CCCTAACGGATAC		207	26	0.13	129	0	0		0	1	29	1	0.03				T	203453089	C	T	203453089	2	4	16	1	0	0	0	0	0	0	0	1	12524	535	19	1		1	PRELP	1	203453089	Silent	SNP	C	TCGA-2G-AAFY-01A-11D-A42Y-10	149872614	203453089	45797532	2	969											
KALRN	8997	mdanderson.org	37	chr3	124114183	124114183	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cctccctcggggagcccagcGaggccaggtcagcatgggca	15	15	1	0	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_003947	exon12	c.G2158T	p.E720X	CCCAGCGAGGCCA		49	3	0.06	47	0	0				4	0	0				T	124114183	G	T	124114183	4	4	16	1	0	0	0	0	0	1	0	0	8018	1059	37	1	2204	1	KALRN	3	124114183	Nonsense_Mutation	SNP	G	TCGA-2G-AAFY-01A-11D-A42Y-10		124114183	73908247	3	970											
FRAS1	80144	mdanderson.org	37	chr4	79460492	79460492	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gataagtacttccatgatgtGccttttgaggctcactttgc	9	9	1	2	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_025074	exon73	c.G11343T	p.V3781V	TGATGTGCCTTTT		86	6	0.07	43	0	0				1	0	0				T	79460492	G	T	79460492	2	4	16	1	0	0	0	0	0	0	0	1	6075	1306	46	2		2	FRAS1	4	79460492	Silent	SNP	G	TCGA-2G-AAFY-01A-11D-A42Y-10		79460492	111693784	4	971											
VCAN	1462	broad.mit.edu	37	chr5	82836890	82836890	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagacgttttacttcccacgGcaacatccctgccaattcct	5	15	0	1	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	VCAN	NM_004385	exon8	c.G8068T	p.A2690S	CCCACGGCAACAT		115	4	0.03	64	0	0		498		130	0	0				T	82836890	G	T	82836890	3	4	16	1	0	0	0	0	1	0	0	0	17197	1203	42	2	8094	2	VCAN	5	82836890	Missense_Mutation	SNP	G	TCGA-2G-AAFY-01A-11D-A42Y-10		82836890	98078370	5	972											
TNIP1	10318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	150436337	150436337	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cgcgcctcacctgcagaatgGaggtgcgctgctcattcttg	12	13	3	1	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_001252385	exon6	c.C617A	p.S206Y	AGAATGGAGGTGC		77	12	0.16	98	0	0				98	6	0.06				T	150436337	G	T	150436337	3	4	16	1	0	0	0	0	1	0	0	0	16373	1174	41	3	1345	3	TNIP1	5	150436337	Missense_Mutation	SNP	G	TCGA-2G-AAFY-01A-11D-A42Y-10	67599447	150436337	30478923	6	973											
GPR141	353345	broad.mit.edu	37	chr7	37780115	37780115	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtgtcatttccattcttttCctcctggtgaaaatgaacac	7	10	2	2	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	GPR141	NM_181791	exon1	c.C120T	p.F40F	TCTTTTCCTCCTG		170	16	0.09	100	6	0.06		79		0	0					T	37780115	C	T	37780115	2	4	16	1	0	0	0	0	0	0	0	1	6688	854	30	3		3	GPR141	7	37780115	Silent	SNP	C	TCGA-2G-AAFY-01A-11D-A42Y-10		37780115	121358548	7	974											
SCRIB	23513	mdanderson.org	37	chr8	144886857	144886857	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaacagcagcggtgggggGtgaggaatgtggcagagggc	22	6	0	2	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_182706	exon21	c.C2890A	p.P964T	TGGGGGGTGAGGA		36	3	0.08	27	0	0				151	0	0				T	144886857	G	T	144886857	3	4	16	1	0	0	0	0	1	0	0	0	13990	1261	44	3	2145	3	SCRIB	8	144886857	Missense_Mutation	SNP	G	TCGA-2G-AAFY-01A-11D-A42Y-10		144886857	1477165	8	975											
RAPGEF1	2889	mdanderson.org	37	chr9	134503341	134503341	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccgggagcactgcccactgTccctgtccagagaggacagc	12	15	0	1	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_198679	exon9	c.A1163G	p.D388G	CCACTGTCCCTGT		50	3	0.06	52	0	0				85	0	0				C	134503341	T	C	134503341	3	2	16	1	0	0	0	0	1	0	0	0	13094	1667	58	4	2188	4	RAPGEF1	9	134503341	Missense_Mutation	SNP	T	TCGA-2G-AAFY-01A-11D-A42Y-10		134503341	6710090	9	976											
ADARB2	105	mdanderson.org	37	chr10	1245984	1245984	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcggtggctcatgacgcgtgCgaggtggcccgtgtggtgca	19	10	1	1	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_018702	exon8	c.G1786C	p.A596P	CGCGTGCGAGGTG		27	3	0.11	24	0	0				0	0					G	1245984	C	G	1245984	3	3	16	1	0	0	0	0	1	0	0	0	282	768	27	5	445	5	ADARB2	10	1245984	Missense_Mutation	SNP	C	TCGA-2G-AAFY-01A-11D-A42Y-10		1245984	134288763	10	977											
TAF3	83860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr10	8006560	8006560	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctatccaggtaaaacaaataCagacaccccctgatgctggg	8	12	0	2	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_031923	exon3	c.C1087T	p.Q363X	CAAATACAGACAC		109	15	0.14	90	0	0				12	2	0.17				T	8006560	C	T	8006560	4	4	16	1	0	0	0	0	0	1	0	0	15581	479	17	3	1097	3	TAF3	10	8006560	Nonsense_Mutation	SNP	C	TCGA-2G-AAFY-01A-11D-A42Y-10	6760576	8006560	127528187	11	978											
LRRTM3	347731	broad.mit.edu;mdanderson.org	37	chr10	68687000	68687000	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatgcttttaatggaatacGcagactcaaagagctgattc	8	7	1	3	rs143239282		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	LRRTM3	NM_178011	exon2	c.G326A	p.R109H	GAATACGCAGACT		52	4	0.08	39	0	0		241		0	0					A	68687000	G	A	68687000	3	1	16	1	0	0	0	0	1	0	0	0	9085	1087	38	1	332	1	LRRTM3	10	68687000	Missense_Mutation	SNP	G	TCGA-2G-AAFY-01A-11D-A42Y-10	60680440	68687000	66847747	12	979											
IRF7	3665	mdanderson.org	37	chr11	615253	615253	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccgaacagcacgcgtggGgctgccctgcgggtgcccgg	16	15	1	0	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_004031	exon1	c.C66A	p.A22A	GCGTGGGGCTGCC		19	2	0.11	23	0	0				125	0	0				T	615253	G	T	615253	2	4	16	1	0	0	0	0	0	0	0	1	7878	1219	43	3		3	IRF7	11	615253	Silent	SNP	G	TCGA-2G-AAFY-01A-11D-A42Y-10		615253	134391263	13	980											
CCDC87	55231	mdanderson.org	37	chr11	66360040	66360040	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggccaaccgggtgagggtGgctgattcagtgaagacccc	16	11	1	4	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_018219	exon1	c.C447A	p.A149A	GAGGGTGGCTGAT		41	3	0.07	46	0	0				1	0	0				T	66360040	G	T	66360040	2	4	16	1	0	0	0	0	0	0	0	1	2882	1335	47	3		3	CCDC87	11	66360040	Silent	SNP	G	TCGA-2G-AAFY-01A-11D-A42Y-10	65744787	66360040	68646476	14	981											
LRP5	4041	mdanderson.org	37	chr11	68216521	68216521	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccgccccctccgtcccccTgcacggactcatcctgacct	6	23	1	1	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_002335	exon23	c.T4831C	p.C1611R	TCCCCCTGCACGG		22	3	0.14	27	0	0				63	0	0				C	68216521	T	C	68216521	3	2	16	1	0	0	0	0	1	0	0	0	9004	1580	55	4	4921	4	LRP5	11	68216521	Missense_Mutation	SNP	T	TCGA-2G-AAFY-01A-11D-A42Y-10	1856481	68216521	66789995	15	982											
STT3A	3703	mdanderson.org	37	chr11	125482643	125482643	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaccctattaagaatgaaGtgagaagcaatgttaagagt	9	6	0	4	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_152713	exon12	c.1365+1G>T	.	AATGAAGTGAGAA		43	3	0.07	39	1	0.0256410256				9	0	0				T	125482643	G	T	125482643	5	4	16	1	0	0	0	0	0	0	1	0	15388	1043	36	3	1408	3	STT3A	11	125482643	Splice_Site	SNP	G	TCGA-2G-AAFY-01A-11D-A42Y-10	57266122	125482643	9523873	16	983											
WBP11	51729	broad.mit.edu	37	chr12	14947586	14947586	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggaggtggaccagggggAgggccaggaggttttctgcc	21	7	1	0	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	WBP11,right_lower_lobe,carcinoma,0,2	WBP11	NM_016312	exon7	c.T606C	p.P202P	AGGGGGAGGGCCA		419	8	0.02	149	3	0.0201342282		66	2	460	3	0.01				G	14947586	A	G	14947586	2	3	16	1	0	0	0	0	0	0	0	1	17317	291	11	4		4	WBP11	12	14947586	Silent	SNP	A	TCGA-2G-AAFY-01A-11D-A42Y-10		14947586	118904309	17	984											
DDX11	1663	ucsc.edu	37	chr12	31254052	31254052	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcacgttccagaaaagagaGctgcctcagatggtcagtcc	10	11	3	3	rs201027785	by1000genomes	TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	DDX11	NM_030653	exon20	c.G2040C	p.E680D	AAGAGAGCTGCCT		171	2	0.01	109	0	0		188		209	26	0.12	rescued with RNA-seq			C	31254052	G	C	31254052	3	2	16	1	0	0	0	0	1	0	0	0	4366	962	34	5	2114	5	DDX11	12	31254052	Missense_Mutation	SNP	G	TCGA-2G-AAFY-01A-11D-A42Y-10	16306466	31254052	102597843	18	985											
ITGA5	3678	broad.mit.edu	37	chr12	54791248	54791248	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatagctgccttctgccttGgtccattgcacagctgtggc	10	14	1	0	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	ITGA5	NM_002205	exon29	c.C2967A	p.T989T	TGCCTTGGTCCAT		125	4	0.03	56	1	0.0178571429		99		203	0	0				T	54791248	G	T	54791248	2	4	16	1	0	0	0	0	0	0	0	1	7922	1335	47	3		3	ITGA5	12	54791248	Silent	SNP	G	TCGA-2G-AAFY-01A-11D-A42Y-10	23537196	54791248	79060647	19	986											
RFC3	5983	broad.mit.edu	37	chr13	34398073	34398073	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gactccatctaaaaaaaaaaTtgaaattagcaccattgcaa	4	8	1	1	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	RFC3	NM_002915	exon3	c.T245A	p.I82N	AAAAAATTGAAAT		479	11	0.02	256	2	0.0078125		40		36	0	0				A	34398073	T	A	34398073	3	1	16	1	0	0	0	0	1	0	0	0	13297	1493	52	5	255	5	RFC3	13	34398073	Missense_Mutation	SNP	T	TCGA-2G-AAFY-01A-11D-A42Y-10		34398073	80771805	20	987											
PCCA	5095	mdanderson.org	37	chr13	100915059	100915059	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tactaatagaaaaatttattGataatcctcgtcatatagaa	4	5	1	3	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_001178004	exon10	c.G793T	p.D265Y	TTTATTGATAATC		46	3	0.07	36	0	0				10	0	0				T	100915059	G	T	100915059	3	4	16	1	0	0	0	0	1	0	0	0	11550	1290	45	3	831	3	PCCA	13	100915059	Missense_Mutation	SNP	G	TCGA-2G-AAFY-01A-11D-A42Y-10	66516986	100915059	14254819	21	988											
OR10G3	26533	mdanderson.org	37	chr14	22038818	22038818	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gagtgtccttagcctgagtgGatacggaattcctgtcagga	13	8	1	1	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_001005465	exon1	c.C58A	p.P20T	TGAGTGGATACGG		20	2	0.1	27	0	0				0	0					T	22038818	G	T	22038818	3	4	16	1	0	0	0	0	1	0	0	0	10947	1174	41	3	886	3	OR10G3	14	22038818	Missense_Mutation	SNP	G	TCGA-2G-AAFY-01A-11D-A42Y-10		22038818	85310722	22	989											
TYRO3	7301	hgsc.bcm.edu;bcgsc.ca	37	chr15	41865666	41865666	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atactgtgcagagtgacgtgGtgagcagggtggcccgtgaa	17	7	0	4	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_006293	exon17	c.2145+1G>T	.	GACGTGGTGAGCA		121	11	0.09	95	0	0				0	0					T	41865666	G	T	41865666	5	4	16	1	0	0	0	0	0	0	1	0	16875	1275	44	3	2212	3	TYRO3	15	41865666	Splice_Site	SNP	G	TCGA-2G-AAFY-01A-11D-A42Y-10		41865666	60665726	23	990											
TMEM62	80021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	43470879	43470879	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taaacatcttctactattctGtgttgttgttgaccctgtat	6	8	3	1	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_024956	exon12	c.G1456A	p.V486M	TATTCTGTGTTGT		142	16	0.11	75	0	0				9	0	0				A	43470879	G	A	43470879	3	1	16	1	0	0	0	0	1	0	0	0	16248	1377	48	3	1502	3	TMEM62	15	43470879	Missense_Mutation	SNP	G	TCGA-2G-AAFY-01A-11D-A42Y-10	1605213	43470879	59060513	24	991											
MEF2A	4205	hgsc.bcm.edu	37	chr15	100211846	100211846	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaatttgataatatgatgcGgaatcataaaatcgcagtga	10	4	1	3	rs75705863	bycluster	TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	MEF2A_ENST00000354410,NS,carcinoma,+1,1	MEF2A_ENST00000354410	NM_005587	exon5	c.G380A	p.R127Q	TGATGCGGAATCA		54	4	0.07	23	1	0.0434782609		1	1	4	0	0				A	100211846	G	A	100211846	3	1	16	1	0	0	0	0	1	0	0	0	9504	1116	39	1	526	1	MEF2A	15	100211846	Missense_Mutation	SNP	G	TCGA-2G-AAFY-01A-11D-A42Y-10	56740967	100211846	2319546	25	992											
C1QTNF8	390664	mdanderson.org	37	chr16	1143813	1143813	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aagcggcccgcggccaggtcGaaggcgccgtccaggttcac	15	15	1	0	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_207419	exon4	c.C447T	p.F149F	CAGGTCGAAGGCG		16	2	0.13	33	0	0				0	0					A	1143813	G	A	1143813	2	1	16	1	0	0	0	0	0	0	0	1	1982	1049	37	1		1	C1QTNF8	16	1143813	Silent	SNP	G	TCGA-2G-AAFY-01A-11D-A42Y-10		1143813	89210940	26	993											
KIAA0430	9665	broad.mit.edu	37	chr16	15709776	15709776	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttacacctggaacacagGtaatgaagtgttctaaggga	11	6	1	1	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	KIAA0430	NM_014647	exon16	c.C3164A	p.T1055N	ACACAGGTAATGA		207	4	0.02	136	0	0		154		11	0	0				T	15709776	G	T	15709776	3	4	16	1	0	0	0	0	1	0	0	0	8218	1261	44	3	2112	3	KIAA0430	16	15709776	Missense_Mutation	SNP	G	TCGA-2G-AAFY-01A-11D-A42Y-10	14565963	15709776	74644977	27	994											
ERI2	112479	broad.mit.edu	37	chr16	20809122	20809122	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtcacaaatatggcttGtttctggagaactaaaagtg	9	6	3	1	rs76921366	bycluster;byfrequency	TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	ERI2	NM_001142725	exon9	c.C2000A	p.T667K	TGGCTTGTTTCTG		155	15	0.1	83	4	0.0481927711		50		14	2	0.14				T	20809122	G	T	20809122	3	4	16	1	0	0	0	0	1	0	0	0	5256	1377	48	3	346	3	ERI2	16	20809122	Missense_Mutation	SNP	G	TCGA-2G-AAFY-01A-11D-A42Y-10	5099346	20809122	69545631	28	995											
PKD1L2	114780	broad.mit.edu	37	chr16	81146189	81146190	+	RNA	INS	-	-	A													tgatgatgatgatgatgaggINSgggaggaggaggaggaggat					rs59722247		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	PKD1L2	.	.	.	.	GATGAGGGGGAGG		6	2	0.33	4	0	0		361		0	0					A	81146190	-	A	81146189	6	5	16	0	1	1	1	0	0	0	0	0	12012	1247	43	0		0	PKD1L2	16	81146189	RNA	INS	-	TCGA-2G-AAFY-01A-11D-A42Y-10	60337067	81146189	9208564	29	996	3	2									
PKD1L2	114780	broad.mit.edu	37	chr16	81146190	81146191	+	RNA	INS	-	-	GA													gatgatgatgatgatgagggINSggaggaggaggaggaggatg					rs72015718	alternate_allele	TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	PKD1L2	.	.	.	.	ATGAGGGGGAGGA		6	2	0.33	4	0	0		361		0	0					GA	81146191	-	GA	81146190	6	5	16	0	1	1	1	0	0	0	0	0	12012	1247	43	0		0	PKD1L2	16	81146190	RNA	INS	-	TCGA-2G-AAFY-01A-11D-A42Y-10	1	81146190	9208563	30	997	3	2									
ALOX12B	242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	7982769	7982769	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caaagtgcagcaggcagaggGgggcgcagtggtgctgcttc	18	9	0	1	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_001139	exon8	c.C1016T	p.P339L	CAGAGGGGGGCGC		197	34	0.17	201	0	0				0	0					A	7982769	G	A	7982769	3	1	16	1	0	0	0	0	1	0	0	0	533	1232	43	3	1121	3	ALOX12B	17	7982769	Missense_Mutation	SNP	G	TCGA-2G-AAFY-01A-11D-A42Y-10		7982769	73212441	31	998											
PLD6	201164	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	17109307	17109307	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgggctggagaaggcgaaCaggcagagatccaggctggc	18	9	0	2	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	PLD6	NM_178836	exon1	c.G294T	p.L98L	GGCGAACAGGCAG		31	6	0.19	48	1	0.0208333333		9		1	0	0				A	17109307	C	A	17109307	2	1	16	1	0	0	0	0	0	0	0	1	12097	465	17	3		3	PLD6	17	17109307	Silent	SNP	C	TCGA-2G-AAFY-01A-11D-A42Y-10	9126538	17109307	64085903	32	999											
FZR1	51343	broad.mit.edu	37	chr19	3531983	3531983	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctgcagagggacatccgcAccccgccactgcagtcggag	12	16	0	1	rs200584048		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	FZR1	NM_001136198	exon9	c.A898C	p.T300P	ATCCGCACCCCGC		31	13	0.42	30	9	0.3		42		74	12	0.16				C	3531983	A	C	3531983	3	2	16	1	0	0	0	0	1	0	0	0	6172	159	6	4	932	4	FZR1	19	3531983	Missense_Mutation	SNP	A	TCGA-2G-AAFY-01A-11D-A42Y-10		3531983	55597000	33	1000											
HMG20B	10362	mdanderson.org	37	chr19	3573771	3573771	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcggcgagggtccacgcgcGggcgagaaggggtcccacga	19	13	0	1	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_006339	exon3	c.G120T	p.A40A	ACGCGCGGGCGAG		49	3	0.06	40	0	0				40	0	0				T	3573771	G	T	3573771	2	4	16	1	0	0	0	0	0	0	0	1	7262	1103	39	1		1	HMG20B	19	3573771	Silent	SNP	G	TCGA-2G-AAFY-01A-11D-A42Y-10	41788	3573771	55555212	34	1001											
TIMM44	10469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	7998431	7998431	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtaccacttggagtccttGtgcagcacgacccccagggc	12	14	0	0	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_006351	exon7	c.C708T	p.H236H	GTCCTTGTGCAGC		169	29	0.17	163	0	0				188	59	0.31				A	7998431	G	A	7998431	2	1	16	1	0	0	0	0	0	0	0	1	15971	1368	48	3		3	TIMM44	19	7998431	Silent	SNP	G	TCGA-2G-AAFY-01A-11D-A42Y-10	4424660	7998431	51130552	35	1002											
RAD23A	5886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	13058807	13058807	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cgatgagaagaactttgtggTcgtcatggtgaccaaggtgg	15	6	1	3	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	RAD23A,NS,carcinoma,+1,1	RAD23A	NM_005053	exon2	c.T218A	p.V73D	TTGTGGTCGTCAT		58	8	0.14	62	0	0		1	1	295	87	0.29				A	13058807	T	A	13058807	3	1	16	1	0	0	0	0	1	0	0	0	13033	1667	58	5	224	5	RAD23A	19	13058807	Missense_Mutation	SNP	T	TCGA-2G-AAFY-01A-11D-A42Y-10	5060376	13058807	46070176	36	1003											
BRD4	23476	broad.mit.edu	37	chr19	15350233	15350233	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaactggagtcttcggctcCtgtttctgtttgtccttgtc	10	11	2	0	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	BRD4	NM_058243	exon17	c.G3546A	p.Q1182Q	CGGCTCCTGTTTC		166	4	0.02	161	0	0		172		128	2	0.02				T	15350233	C	T	15350233	2	4	16	1	0	0	0	0	0	0	0	1	1506	680	24	3		3	BRD4	19	15350233	Silent	SNP	C	TCGA-2G-AAFY-01A-11D-A42Y-10	2291426	15350233	43778750	37	1004											
LYPD3	27076	mdanderson.org	37	chr19	43967282	43967282	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccggggctccctcacctgcCgtcaaggtgacgttgccgtc	12	16	2	1	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_014400	exon4	c.G540A	p.T180T	ACCTGCCGTCAAG		37	3	0.08	53	0	0				6	0	0				T	43967282	C	T	43967282	2	4	16	1	0	0	0	0	0	0	0	1	9156	639	23	1		1	LYPD3	19	43967282	Silent	SNP	C	TCGA-2G-AAFY-01A-11D-A42Y-10	28617049	43967282	15161701	38	1005											
AVP	551	mdanderson.org	37	chr20	3063730	3063730	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcctcctggcagcgcagcGcctcagccgtgcccacgaag	11	18	2	0	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_000490	exon2	c.C215T	p.A72V	CGCAGCGCCTCAG		10	3	0.3	13	0	0				11	0	0				A	3063730	G	A	3063730	3	1	16	1	0	0	0	0	1	0	0	0	1227	1087	38	1	287	1	AVP	20	3063730	Missense_Mutation	SNP	G	TCGA-2G-AAFY-01A-11D-A42Y-10		3063730	59961790	39	1006											
RRBP1	6238	bcgsc.ca	37	chr20	17639834	17639834	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgggccccctcggccttcTtgccctggttctgggccccc	11	19	3	0	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	RRBP1	.	.	.	.	GCCTTCTTGCCCT		257	17	0.07	242	4	0.0165289256		157		837	59	0.07				C	17639834	T	C	17639834	3	2	16	1	0	0	0	0	1	0	0	0	13729	1624	56	4		4	RRBP1	20	17639834	Missense_Mutation	SNP	T	TCGA-2G-AAFY-01A-11D-A42Y-10	14576104	17639834	45385686	40	1007											
NINL	22981	mdanderson.org	37	chr20	25439019	25439019	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgctgcatccccacttacCcgctgtgcatccaggcgcct	8	19	0	0	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_025176	exon22	c.G3843A	p.R1281R	ACTTACCCGCTGT		20	3	0.15	36	0	0				39	0	0				T	25439019	C	T	25439019	2	4	16	1	0	0	0	0	0	0	0	1	10466	637	22	3		3	NINL	20	25439019	Silent	SNP	C	TCGA-2G-AAFY-01A-11D-A42Y-10	7799185	25439019	37586501	41	1008											
C20orf195	79025	mdanderson.org	37	chr20	62187284	62187284	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacctggccctgggcgacCagaacccgctggtgctgcct	13	16	0	1	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	NM_024059	exon2	c.C268A	p.Q90K	GGCGACCAGAACC		21	3	0.14	16	0	0				5	0	0				A	62187284	C	A	62187284	3	1	16	1	0	0	0	0	1	0	0	0	2114	595	21	3	270	3	C20orf195	20	62187284	Missense_Mutation	SNP	C	TCGA-2G-AAFY-01A-11D-A42Y-10	36748265	62187284	838236	42	1009											
BAGE	85319	broad.mit.edu	37	chr21	11096512	11096516	+	RNA	DEL	GTTTT	GTTTT	-													cagtgcctaaccatttttaaGttttgttttgttttgttttg					rs139100150	alternate_allele	TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	GTTTT	GTTTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	.	.	.	.	.	TTTTAAGTTTTGT		6	2	0.33	6	0	0				0	0					-	11096516	GTTTT	-	11096512	6	5	16	0	1	1	0	1	0	0	0	0	1289	1044	36	0		0	BAGE	21	11096512	RNA	DEL	GTTTT	TCGA-2G-AAFY-01A-11D-A42Y-10		11096512	37033383	43	1010											
HIC2	23119	broad.mit.edu;mdanderson.org	37	chr22	21799538	21799538	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgagcccaacttcagcacCctcctcactgccgccagcta	7	20	2	0	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	HIC2	NM_015094	exon3	c.C354A	p.T118T	CAGCACCCTCCTC		75	6	0.08	58	0	0		42		20	10	0.5				A	21799538	C	A	21799538	2	1	16	1	0	0	0	0	0	0	0	1	7142	610	22	3		3	HIC2	22	21799538	Silent	SNP	C	TCGA-2G-AAFY-01A-11D-A42Y-10		21799538	29505028	44	1011											
PNPLA4	8228	broad.mit.edu	37	chrX	7868821	7868821	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctcttgcttgggggaaaaAgggcttggttgagtctcacc	13	9	2	1	novel		TCGA-2G-AAFY-01A-11D-A42Y-10	TCGA-2G-AAFY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6fcf0ebe-135e-4a5d-bce6-68fa0e4c3961	533341c5-782e-418a-8db9-996ff3f09e94	.	PNPLA4	NM_004650	exon7	c.T668C	p.L223P	GGAAAAAGGGCTT		371	5	0.01	165	0	0		24		94	0	0				G	7868821	A	G	7868821	3	3	16	1	0	0	0	0	1	0	0	0	12214	72	3	4	97	4	PNPLA4	23	7868821	Missense_Mutation	SNP	A	TCGA-2G-AAFY-01A-11D-A42Y-10		7868821	147401739	45	1012											
KIF17	57576	broad.mit.edu	37	chr1	21011461	21011461	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcctccaaccacacgccaGgctctgctgtccgcaccacc	8	20	1	0	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	KIF17	NM_020816	exon10	c.C2072A	p.P691H	ACGCCAGGCTCTG		201	5	0.02	222	0	0		130		6	0	0				T	21011461	G	T	21011461	3	4	17	1	0	0	0	0	1	0	0	0	8320	1000	35	3	1041	3	KIF17	1	21011461	Missense_Mutation	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10		21011461	228239160	1	1013											
PEF1	553115	hgsc.bcm.edu	37	chr1	32096374	32096374	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatggcaggattggcagagCgtgggcagtagcgggagacc	19	8	0	2	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	PEF1,NS,carcinoma,+1,1	PEF1	NM_012392	exon5	c.G695A	p.R232H	GCAGAGCGTGGGC		42	2	0.05	69	1	0.0144927536		1	1	195	0	0				T	32096374	C	T	32096374	3	4	17	1	0	0	0	0	1	0	0	0	11764	768	27	1	163	1	PEF1	1	32096374	Missense_Mutation	SNP	C	TCGA-2G-AAFZ-01A-11D-A42Y-10	11084913	32096374	217154247	2	1014											
ZNF362	149076	mdanderson.org	37	chr1	33742069	33742069	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttgctagtgccgccggcaCccgccgagagcagccaggcc	14	17	0	1	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_152493	exon4	c.C223A	p.P75T	CCGGCACCCGCCG		24	3	0.13	28	0	0				11	0	0				A	33742069	C	A	33742069	3	1	17	1	0	0	0	0	1	0	0	0	17924	507	18	3	233	3	ZNF362	1	33742069	Missense_Mutation	SNP	C	TCGA-2G-AAFZ-01A-11D-A42Y-10	1645695	33742069	215508552	3	1015											
RSBN1	54665	broad.mit.edu	37	chr1	114354926	114354926	+	Frame_Shift_Del	DEL	C	C	-													acatttaaatggcccgaccgCccccccgtccgcgcatcgcg					novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	RSBN1	NM_018364	exon1	c.109delG	p.A37fs	CGACCGCCCCCCC		11	3	0.27	19	0	0		71		1	0	0				-	114354926	C	-	114354926	7	5	17	1	0	1	0	1	0	0	0	0	13747	739	26	0	2327	0	RSBN1	1	114354926	Frame_Shift_Del	DEL	C	TCGA-2G-AAFZ-01A-11D-A42Y-10	80612857	114354926	134895695	4	1016											
FCRL2	79368	mdanderson.org	37	chr1	157745582	157745582	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctgcctgttcagtgactGcatctgtgaggagatcaaaa	10	10	3	3	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_030764	exon2	c.C35T	p.A12V	GTGACTGCATCTG		43	3	0.07	35	0	0				0	0					A	157745582	G	A	157745582	3	1	17	1	0	0	0	0	1	0	0	0	5827	1319	46	2	1535	2	FCRL2	1	157745582	Missense_Mutation	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	43390656	157745582	91505039	5	1017											
MFSD2B	388931	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	24246462	24246462	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccgccgcaggtccatgctGccagacgtggtggatgactt	13	14	0	2	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_001080473	exon12	c.G1179A	p.L393L	CATGCTGCCAGAC		212	18	0.08	105	0	0				0	0					A	24246462	G	A	24246462	2	1	17	1	0	0	0	0	0	0	0	1	9580	1306	46	2		2	MFSD2B	2	24246462	Silent	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10		24246462	218952911	6	1018											
EGR4	1961	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	73519001	73519001	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cttggcctgggggaaaggggTgggcggcggcggcggcacgg	24	9	0	0	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_001965	exon2	c.A1354T	p.T452S	AAGGGGTGGGCGG		14	8	0.57	23	0	0				0	0					A	73519001	T	A	73519001	3	1	17	1	0	0	0	0	1	0	0	0	5000	1696	59	5	419	5	EGR4	2	73519001	Missense_Mutation	SNP	T	TCGA-2G-AAFZ-01A-11D-A42Y-10	49272539	73519001	169680372	7	1019											
TMEM131	23505	mdanderson.org	37	chr2	98418952	98418952	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	taaagccagaggaataaactGaacatagacaggaacatctg	9	7	1	3	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_015348	exon24	c.C2590A	p.Q864K	TAAACTGAACATA		119	5	0.04	177	0	0				41	0	0				T	98418952	G	T	98418952	3	4	17	1	0	0	0	0	1	0	0	0	16103	1299	45	3	3133	3	TMEM131	2	98418952	Missense_Mutation	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	24899951	98418952	144780421	8	1020											
TANC1	85461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	159992709	159992709	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	atctttcccactacaggtccCgtcaggaagcccaagtatgt	8	13	2	0	rs375201296	alternate_allele	TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	TANC1,NS,carcinoma,0,2	TANC1	NM_033394	exon5	c.C264G	p.P88P	AGGTCCCGTCAGG		44	9	0.2	62	0	0		0	2	12	6	0.5				G	159992709	C	G	159992709	2	3	17	1	0	0	0	0	0	0	0	1	15600	639	23	5		5	TANC1	2	159992709	Silent	SNP	C	TCGA-2G-AAFZ-01A-11D-A42Y-10	61573757	159992709	83206664	9	1021											
IFIH1	64135	broad.mit.edu;mdanderson.org	37	chr2	163174366	163174366	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catctgaacagacacctaccCggtttctgtcttcaattgtc	6	13	4	2	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	IFIH1	NM_022168	exon1	c.G452A	p.R151Q	CCTACCCGGTTTC		58	3	0.05	82	0	0		102		43	4	0.09				T	163174366	C	T	163174366	5	4	17	1	0	0	0	0	0	0	1	0	7563	666	23	1	2689	1	IFIH1	2	163174366	Splice_Site	SNP	C	TCGA-2G-AAFZ-01A-11D-A42Y-10	3181657	163174366	80025007	10	1022											
RAPH1	65059	broad.mit.edu	37	chr2	204312708	204312708	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tgctggaagaactggatcccGatttaatgctggagctggat	13	7	0	1	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	RAPH1	NM_203365	exon14	c.C1763A	p.S588X	GATCCCGATTTAA		127	3	0.02	132	0	0		118		15	0	0				T	204312708	G	T	204312708	4	4	17	1	0	0	0	0	0	1	0	0	13101	1059	37	1	2164	1	RAPH1	2	204312708	Nonsense_Mutation	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	41138342	204312708	38886665	11	1023											
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	230650472	230650472	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcaccagactccaagctcaCctcattttcatactggattt	4	13	4	1	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_004238	exon34	c.4869+1G>A	.	AGCTCACCTCATT		78	43	0.55	79	0	0				15	15	1				T	230650472	C	T	230650472	5	4	17	1	0	0	0	0	0	0	1	0	16616	521	18	3	1144	3	TRIP12	2	230650472	Splice_Site	SNP	C	TCGA-2G-AAFZ-01A-11D-A42Y-10	26337764	230650472	12548901	12	1024											
EFHB	151651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	19975292	19975292	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaatattctgtctttctaaTcccatttcaagccccttgct	4	12	4	0	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_144715	exon1	c.A219T	p.G73G	TTCTAATCCCATT		373	29	0.08	314	0	0				4	0	0				A	19975292	T	A	19975292	2	1	17	1	0	0	0	0	0	0	0	1	4971	1422	50	5		5	EFHB	3	19975292	Silent	SNP	T	TCGA-2G-AAFZ-01A-11D-A42Y-10		19975292	178047138	13	1025											
WNT5A	7474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	55504144	55504144	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgcacacaaactggtccacGatctccgtgcacttcttgca	7	14	2	0	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	WNT5A,NS,carcinoma,0,1	WNT5A	NM_003392	exon5	c.C1119T	p.I373I	GTCCACGATCTCC		150	19	0.13	135	0	0		0	1	22	4	0.18				A	55504144	G	A	55504144	2	1	17	1	0	0	0	0	0	0	0	1	17450	1048	37	1		1	WNT5A	3	55504144	Silent	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	35528852	55504144	142518286	14	1026											
FLNB	2317	broad.mit.edu	37	chr3	58098020	58098020	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taattatgactactctcacaCggttaaatatacacccaccc	3	13	1	1	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	FLNB	NM_001457	exon18	c.C2720T	p.T907M	CTCACACGGTTAA		168	4	0.02	144	0	0		430		84	3	0.04				T	58098020	C	T	58098020	3	4	17	1	0	0	0	0	1	0	0	0	5966	536	19	1	2790	1	FLNB	3	58098020	Missense_Mutation	SNP	C	TCGA-2G-AAFZ-01A-11D-A42Y-10	2593876	58098020	139924410	15	1027											
EPHA3	2042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	89480495	89480495	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tggaggatgacccagaagctGcttatacaacaagagtgagt	12	7	0	4	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_005233	exon13	c.G2332C	p.A778P	GAAGCTGCTTATA		116	54	0.47	163	0	0				51	27	0.53				C	89480495	G	C	89480495	3	2	17	1	0	0	0	0	1	0	0	0	5196	1319	46	5	2408	5	EPHA3	3	89480495	Missense_Mutation	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	31382475	89480495	108541935	16	1028											
ABTB1	80325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	127395400	127395400	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaccccgtggcctttgggGccctgctgcagtacctgtac	11	15	1	0	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_172027	exon6	c.G502A	p.A168T	TTTGGGGCCCTGC		144	9	0.06	118	0	0				40	2	0.05				A	127395400	G	A	127395400	3	1	17	1	0	0	0	0	1	0	0	0	102	1203	42	2	524	2	ABTB1	3	127395400	Missense_Mutation	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	37914905	127395400	70627030	17	1029											
SLC30A9	10463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	41992712	41992712	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cgcggcccacagatgtagctGgtcctccctgtgccggctcc	12	17	0	1	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_006345	exon1	c.G44C	p.W15S	GTAGCTGGTCCTC		67	33	0.49	80	0	0				40	25	0.63				C	41992712	G	C	41992712	3	2	17	1	0	0	0	0	1	0	0	0	14616	1357	47	5	46	5	SLC30A9	4	41992712	Missense_Mutation	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10		41992712	149161564	18	1030											
LIN54	132660	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	83867529	83867529	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgcttccaggcacttgaatCtgctggacattgggagcagt	12	9	1	1	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	LIN54	NM_194282	exon5	c.G1050T	p.Q350H	TTGAATCTGCTGG		170	8	0.05	197	0	0		50		15	0	0				A	83867529	C	A	83867529	3	1	17	1	0	0	0	0	1	0	0	0	8849	912	32	3	1235	3	LIN54	4	83867529	Missense_Mutation	SNP	C	TCGA-2G-AAFZ-01A-11D-A42Y-10	41874817	83867529	107286747	19	1031											
ADAMTS2	9509	mdanderson.org	37	chr5	178564853	178564853	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actggcggcactgctcctcgCggaagtcagccagggagtcg	15	13	1	0	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_014244	exon12	c.G1868A	p.R623H	TCCTCGCGGAAGT		40	3	0.08	40	0	0				17	0	0				T	178564853	C	T	178564853	3	4	17	1	0	0	0	0	1	0	0	0	264	768	27	1	1811	1	ADAMTS2	5	178564853	Missense_Mutation	SNP	C	TCGA-2G-AAFZ-01A-11D-A42Y-10		178564853	2350407	20	1032											
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	12125357	12125357	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagctgtttgtgcaacagacGtgagacctttagaggctttg	13	7	0	3	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_002114	exon4	c.G5329A	p.V1777M	ACAGACGTGAGAC		155	16	0.1	160	0	0				17	2	0.12				A	12125357	G	A	12125357	3	1	17	1	0	0	0	0	1	0	0	0	7226	1145	40	1	5339	1	HIVEP1	6	12125357	Missense_Mutation	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10		12125357	158989710	21	1033											
LY6G5B	58496	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	31639021	31639021	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ggctcagagaagtgtaccatCagcagctcatccctgtgcat	10	12	3	1	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_021221	exon2	c.C147G	p.I49M	TACCATCAGCAGC		182	9	0.05	215	0	0				11	1	0.09				G	31639021	C	G	31639021	3	3	17	1	0	0	0	0	1	0	0	0	9137	816	29	5	153	5	LY6G5B	6	31639021	Missense_Mutation	SNP	C	TCGA-2G-AAFZ-01A-11D-A42Y-10	19513664	31639021	139476046	22	1034											
FRS3	10817	mdanderson.org	37	chr6	41739127	41739127	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaaacttcacctggcctgGctgcaagaacacctgtgggt	10	13	1	1	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_006653	exon7	c.C709A	p.P237T	GGCCTGGCTGCAA		47	3	0.06	54	0	0				9	0	0				T	41739127	G	T	41739127	3	4	17	1	0	0	0	0	1	0	0	0	6096	1203	42	2	773	2	FRS3	6	41739127	Missense_Mutation	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	10100106	41739127	129375940	23	1035											
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	46659709	46659709	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctttcagagagaaaaataGgagattcatgtgacaaagat	9	5	3	5	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_001168359	exon1	c.G3844A	p.G1282R	AAAATAGGAGATT		172	32	0.19	227	0	0				0	0					A	46659709	G	A	46659709	3	1	17	1	0	0	0	0	1	0	0	0	15792	1001	35	3	3846	3	TDRD6	6	46659709	Missense_Mutation	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	4920582	46659709	124455358	24	1036											
NUDCD3	23386	mdanderson.org	37	chr7	44530025	44530025	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctgcagcaccaaggcctGcgcggccccgggcgggaagc	15	17	0	0	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_015332	exon1	c.C175A	p.Q59K	AGGCCTGCGCGGC		28	3	0.11	19	0	0				149	0	0				T	44530025	G	T	44530025	3	4	17	1	0	0	0	0	1	0	0	0	10771	1328	46	2	934	2	NUDCD3	7	44530025	Missense_Mutation	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10		44530025	114608638	25	1037											
VGF	7425	mdanderson.org	37	chr7	100807777	100807777	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctggctgcgcacggtctcGgtcagcagagcttcagctgc	14	13	4	1	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_003378	exon2	c.C348A	p.T116T	GGTCTCGGTCAGC		25	3	0.12	15	0	0				10	0	0				T	100807777	G	T	100807777	2	4	17	1	0	0	0	0	0	0	0	1	17216	1103	39	1		1	VGF	7	100807777	Silent	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	56277752	100807777	58330886	26	1038											
CALU	813	bcgsc.ca;mdanderson.org	37	chr7	128409204	128409204	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	attttggggaggccttagtaCggcatgatgagttctgagct	14	6	1	3	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	CALU	NM_001199671	exon8	c.C955T	p.R319W	TTAGTACGGCATG		107	5	0.05	85	0	0		42		509	0	0				T	128409204	C	T	128409204	3	4	17	1	0	0	0	0	1	0	0	0	2612	527	19	1	1151	1	CALU	7	128409204	Missense_Mutation	SNP	C	TCGA-2G-AAFZ-01A-11D-A42Y-10	27601427	128409204	30729459	27	1039											
GSDMD	79792	mdanderson.org	37	chr8	144644256	144644256	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgctggagggcctggaGggggtgctgcgggaccagct	20	10	0	0	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_001166237	exon11	c.G951T	p.E317D	CCTGGAGGGGGTG		29	3	0.1	13	1	0.0769230769				33	0	0				T	144644256	G	T	144644256	3	4	17	1	0	0	0	0	1	0	0	0	6859	991	35	3	977	3	GSDMD	8	144644256	Missense_Mutation	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10		144644256	1719766	28	1040											
OPLAH	26873	mdanderson.org	37	chr8	145113441	145113441	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcagaagccctgcacgtaGcgctggatggcgggcgtgag	18	11	0	2	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_017570	exon6	c.C741A	p.R247R	CACGTAGCGCTGG		18	3	0.17	22	0	0				12	0	0				T	145113441	G	T	145113441	2	4	17	1	0	0	0	0	0	0	0	1	10923	958	34	2		2	OPLAH	8	145113441	Silent	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	469185	145113441	1250581	29	1041											
ARHGAP39	80728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	145806589	145806590	+	Frame_Shift_Ins	INS	-	-	CACTCACC													cggccggcgggtcccacacgINScactcaccggtgaccaggtt					novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	ARHGAP39	NM_025251	exon4	c.153_154insGGTGAGTG	p.C51fs	CCACACGCACTCA		210	18	0.09	160	0	0		80		18	0	0				CACTCACC	145806590	-	CACTCACC	145806589	7	5	17	1	0	1	1	0	0	0	0	0	881	1079	38	0	3231	0	ARHGAP39	8	145806589	Frame_Shift_Ins	INS	-	TCGA-2G-AAFZ-01A-11D-A42Y-10	693148	145806589	557433	30	1042											
SHOC2	8036	mdanderson.org	37	chr10	112724386	112724386	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aaatccagcaatgcagaggtGattaaagagctcaacaaatg	9	7	1	3	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_001269039	exon1	c.G270T	p.V90V	AGAGGTGATTAAA		118	5	0.04	159	0	0				30	0	0				T	112724386	G	T	112724386	2	4	17	1	0	0	0	0	0	0	0	1	14341	1277	45	3		3	SHOC2	10	112724386	Silent	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10		112724386	22810361	31	1043											
AHNAK	79026	hgsc.bcm.edu	37	chr11	62294188	62294188	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atgttcatctctggcatcttTaacttaggccctttcaactt	5	11	4	0	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	AHNAK,mucosal,malignant_melanoma,0,2	AHNAK	NM_001620	exon5	c.A7701C	p.L2567F	CATCTTTAACTTA		154	8	0.05	214	0	0		0	2	94	0	0				G	62294188	T	G	62294188	3	3	17	1	0	0	0	0	1	0	0	0	411	1751	61	4	10091	4	AHNAK	11	62294188	Missense_Mutation	SNP	T	TCGA-2G-AAFZ-01A-11D-A42Y-10		62294188	72712328	32	1044											
HTR3B	9177	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	113775694	113775694	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gctcccctgtgggcctgcatCctggtggctgcaggtgagtc	15	13	0	1	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	HTR3B	NM_006028	exon1	c.C39A	p.I13I	CTGCATCCTGGTG		77	33	0.43	122	1	0.0081967213		50		0	0					A	113775694	C	A	113775694	2	1	17	1	0	0	0	0	0	0	0	1	7488	845	30	3		3	HTR3B	11	113775694	Silent	SNP	C	TCGA-2G-AAFZ-01A-11D-A42Y-10	51481506	113775694	21230822	33	1045											
OR10G9	219870	mdanderson.org	37	chr11	123894601	123894601	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	accctgagaaacaaggaggtGaagaaagctgtgttgaaact	12	6	0	4	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_001001953	exon1	c.G882T	p.V294V	GGAGGTGAAGAAA		30	3	0.1	98	0	0				0	0					T	123894601	G	T	123894601	2	4	17	1	0	0	0	0	0	0	0	1	10951	1277	45	3		3	OR10G9	11	123894601	Silent	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	10118907	123894601	11111915	34	1046											
WBP11	51729	broad.mit.edu	37	chr12	14947586	14947586	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggaggtggaccagggggAgggccaggaggttttctgcc	21	7	1	0	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	WBP11,right_lower_lobe,carcinoma,0,2	WBP11	NM_016312	exon7	c.T606C	p.P202P	AGGGGGAGGGCCA		588	9	0.02	220	2	0.0090909091		66	2	566	1	0				G	14947586	A	G	14947586	2	3	17	1	0	0	0	0	0	0	0	1	17317	291	11	4		4	WBP11	12	14947586	Silent	SNP	A	TCGA-2G-AAFZ-01A-11D-A42Y-10		14947586	118904309	35	1047											
SPRYD3	84926	broad.mit.edu	37	chr12	53471008	53471009	+	Missense_Mutation	DNP	GC	GC	AG													ccaattcagaaaccggtagtGcaggttgaggtcatccatct					novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	GC	GC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	SPRYD3	NM_032840	exon2	c.G60C	p.H58Y	GGTAGTGCAGGTT		110	4	0.04	106	0	0		29		64	0	0				AG	53471009	GC	AG	53471008	3	1	17	1	0	0	0	0	1	0	0	0	15164	1319	46	2	1307	2	SPRYD3	12	53471008	Missense_Mutation	DNP	GC	TCGA-2G-AAFZ-01A-11D-A42Y-10	38523422	53471008	80380887	36	1048											
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	81760903	81760903	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ataccttatcatgtaaagatTcttcaagattctttctgaaa	4	7	5	3	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	PPFIA2,NS,carcinoma,-1,1	PPFIA2	NM_001220476	exon13	c.A1529T	p.E510V	AAAGATTCTTCAA		501	107	0.21	495	0	0		-1	1	0	0					A	81760903	T	A	81760903	3	1	17	1	0	0	0	0	1	0	0	0	12354	1783	62	5	2320	5	PPFIA2	12	81760903	Missense_Mutation	SNP	T	TCGA-2G-AAFZ-01A-11D-A42Y-10	28289895	81760903	52090992	37	1049											
CIT	11113	mdanderson.org	37	chr12	120128070	120128070	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cgcgtgctgagcatccggccGggggacttctctcgctccag	14	15	1	1	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	CIT_ENST00000392521,axilla,malignant_melanoma,-2,6	CIT_ENST00000392521	NM_001206999	exon47	c.C6072G	p.P2024P	CCGGCCGGGGGAC		17	2	0.12	12	0	0		-2	6	40	0	0				C	120128070	G	C	120128070	2	2	17	1	0	0	0	0	0	0	0	1	3461	1103	39	5		5	CIT	12	120128070	Silent	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	38367167	120128070	13723825	38	1050											
TCTN2	79867	mdanderson.org	37	chr12	124156143	124156143	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgaccgtgtccctggcaGtgctgcaggacgaggcgggt	18	10	0	1	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_001143850	exon2	c.G172T	p.V58L	CTGGCAGTGCTGC		68	4	0.06	46	0	0				47	0	0				T	124156143	G	T	124156143	3	4	17	1	0	0	0	0	1	0	0	0	15781	1029	36	3	178	3	TCTN2	12	124156143	Missense_Mutation	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	4028073	124156143	9695752	39	1051											
RB1	5925	broad.mit.edu	37	chr13	48947559	48947559	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	aggactgttatgaacactatCcaacaattaatgatgatttt	6	6	0	3	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	RB1	NM_000321	exon12	c.C1146A	p.I382I	CACTATCCAACAA		334	6	0.02	450	1	0.0022222222		1068		29	1	0.03				A	48947559	C	A	48947559	2	1	17	1	0	0	0	0	0	0	0	1	13149	845	30	3		3	RB1	13	48947559	Silent	SNP	C	TCGA-2G-AAFZ-01A-11D-A42Y-10		48947559	66222319	40	1052											
CLDN10	9071	broad.mit.edu	37	chr13	96085990	96085990	+	Translation_Start_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgtcacctacccacatccGctggctgtgacgcttgtcaa	9	15	2	1	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	CLDN10	.	.	.	.	ACATCCGCTGGCT		40	3	0.08	51	1	0.0196078431		70		0	0					A	96085990	G	A	96085990	1	1	17	1	0	0	0	0	0	0	0	0	3495	1102	38	1		1	CLDN10	13	96085990	Translation_Start_Site	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	47138431	96085990	19083888	41	1053											
TM9SF2	9375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	100192991	100192991	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgataagatcagatgggcGtctagatgggactatattct	12	5	3	4	rs149415928	alternate_allele	TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_004800	exon8	c.G852T	p.A284A	ATGGGCGTCTAGA		160	74	0.46	211	0	0				226	105	0.46				T	100192991	G	T	100192991	2	4	17	1	0	0	0	0	0	0	0	1	16037	1132	40	1		1	TM9SF2	13	100192991	Silent	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	4107001	100192991	14976887	42	1054											
ING1	3621	mdanderson.org	37	chr13	111366533	111366533	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acggggagcagctccacctgGtgaactatgtggaggactac	14	10	0	1	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_198219	exon1	c.G37T	p.V13L	CACCTGGTGAACT		34	3	0.09	55	0	0				21	0	0				T	111366533	G	T	111366533	3	4	17	1	0	0	0	0	1	0	0	0	7778	1261	44	3	47	3	ING1	13	111366533	Missense_Mutation	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	11173542	111366533	3803345	43	1055											
ADAM21	8747	bcgsc.ca	37	chr14	70924643	70924643	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaaataagtggcctcactTatgaaattgaacccatcagg	7	8	2	2	rs78114303	bycluster;by1000genomes	TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	ADAM21	NM_003813	exon2	c.T427C	p.Y143H	CTCACTTATGAAA		174	13	0.07	144	3	0.0208333333		181		0	0					C	70924643	T	C	70924643	3	2	17	1	0	0	0	0	1	0	0	0	242	1754	61	4	429	4	ADAM21	14	70924643	Missense_Mutation	SNP	T	TCGA-2G-AAFZ-01A-11D-A42Y-10		70924643	36424897	44	1056											
HEATR4	399671	broad.mit.edu	37	chr14	73989219	73989219	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctggatccatcgggctgtgCgctcgttcagcttttccagc	11	13	2	0	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	HEATR4,colon,carcinoma,0,1	HEATR4	NM_203309	exon2	c.G638A	p.R213H	GCTGTGCGCTCGT		156	5	0.03	114	0	0		126	1	1	0	0				T	73989219	C	T	73989219	3	4	17	1	0	0	0	0	1	0	0	0	7070	768	27	1	2506	1	HEATR4	14	73989219	Missense_Mutation	SNP	C	TCGA-2G-AAFZ-01A-11D-A42Y-10	3064576	73989219	33360321	45	1057											
PLA2G4F	255189	broad.mit.edu	37	chr15	42436300	42436300	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaccaggtacaggcagtccCgcatgggggtgagctggttg	16	11	0	1	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	PLA2G4F,NS,carcinoma,-1,2	PLA2G4F	NM_213600	exon18	c.G2018A	p.R673Q	CAGTCCCGCATGG		74	3	0.04	77	0	0		75	2	1	0	0				T	42436300	C	T	42436300	3	4	17	1	0	0	0	0	1	0	0	0	12053	652	23	1	543	1	PLA2G4F	15	42436300	Missense_Mutation	SNP	C	TCGA-2G-AAFZ-01A-11D-A42Y-10		42436300	60095092	46	1058											
ZNF609	23060	mdanderson.org	37	chr15	64970351	64970351	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggacatatgtttatcctGccaagtactcagacatcaag	8	9	2	1	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_015042	exon5	c.G3439T	p.A1147S	TATCCTGCCAAGT		46	3	0.07	65	0	0				28	0	0				T	64970351	G	T	64970351	3	4	17	1	0	0	0	0	1	0	0	0	18091	1319	46	2	3457	2	ZNF609	15	64970351	Missense_Mutation	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	22534051	64970351	37561041	47	1059											
AXIN1	8312	mdanderson.org	37	chr16	347728	347728	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcgcacgctcacctgtggGcgaggccatcactggcgttg	15	13	2	0	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_003502	exon6	c.C1778A	p.A593D	CTGTGGGCGAGGC		33	3	0.09	29	0	0				62	0	0				T	347728	G	T	347728	3	4	17	1	0	0	0	0	1	0	0	0	1234	1203	42	2	834	2	AXIN1	16	347728	Missense_Mutation	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10		347728	90007025	48	1060											
CRAMP1L	57585	mdanderson.org	37	chr16	1717336	1717336	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcgtgctcttcctgcagGgctccgacccatttgtcagc	12	14	2	0	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_020825	exon16	c.G3037T	p.G1013C	CTGCAGGGCTCCG		46	3	0.07	62	1	0.0161290323				12	0	0				T	1717336	G	T	1717336	3	4	17	1	0	0	0	0	1	0	0	0	3869	1246	43	3	3099	3	CRAMP1L	16	1717336	Missense_Mutation	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	1369608	1717336	88637417	49	1061											
IGFALS	3483	broad.mit.edu;mdanderson.org	37	chr16	1841105	1841105	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggttggaggtcaggtcgagCtccagcagctccgccagccc	14	14	1	0	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	IGFALS	NM_001146006	exon2	c.G1428A	p.E476E	GTCGAGCTCCAGC		13	3	0.23	27	0	0		29		10	1	0.1				T	1841105	C	T	1841105	2	4	17	1	0	0	0	0	0	0	0	1	7620	796	28	2		2	IGFALS	16	1841105	Silent	SNP	C	TCGA-2G-AAFZ-01A-11D-A42Y-10	123769	1841105	88513648	50	1062											
THAP11	57215	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	67876460	67876460	+	Translation_Start_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccgcgcggcgcagccatGcctggctttacgtgctgcgt	16	14	0	0	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	THAP11	NM_020457	exon1	c.G3T	p.M1I	AGCCATGCCTGGC		24	10	0.42	49	0	0		27		22	12	0.55				T	67876460	G	T	67876460	1	4	17	1	0	0	0	0	0	0	0	0	15902	1319	46	2		2	THAP11	16	67876460	Translation_Start_Site	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	66035355	67876460	22478293	51	1063											
NFATC3	4775	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	68119617	68119617	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aactgtggcgcccacgacgaGctcgacttcaaactcgtctt	9	14	2	0	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_173163	exon1	c.G33A	p.E11E	CGACGAGCTCGAC		22	8	0.36	40	0	0				3	1	0.33				A	68119617	G	A	68119617	2	1	17	1	0	0	0	0	0	0	0	1	10410	962	34	2		2	NFATC3	16	68119617	Silent	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	243157	68119617	22235136	52	1064											
AP1G1	164	broad.mit.edu;mdanderson.org	37	chr16	71805154	71805154	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catgaacagcacacagtgctGcctatgaaaaaaaaaataaa	6	8	0	2	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	AP1G1	NM_001030007	exon5	c.C470A	p.A157E	AGTGCTGCCTATG		68	5	0.07	96	0	0		83		22	0	0				T	71805154	G	T	71805154	5	4	17	1	0	0	0	0	0	0	1	0	728	1333	46	2	2087	2	AP1G1	16	71805154	Splice_Site	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	3685537	71805154	18549599	53	1065											
TMEM102	284114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	7339839	7339839	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tccaccgaacggagagcgaaGaaagttccaaggactggcaa	12	10	0	2	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_178518	exon3	c.G541C	p.E181Q	AGCGAAGAAAGTT		119	49	0.41	145	0	0				29	13	0.45				C	7339839	G	C	7339839	3	2	17	1	0	0	0	0	1	0	0	0	16076	943	33	5	547	5	TMEM102	17	7339839	Missense_Mutation	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10		7339839	73855371	54	1066											
CHAF1A	10036	mdanderson.org	37	chr19	4428887	4428887	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatgcagatatttttaacaGgtcagagcctgaggaggtcg	13	6	1	3	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_005483	exon8	c.G1604T	p.S535I	TTAACAGGTCAGA		57	3	0.05	69	0	0				67	0	0				T	4428887	G	T	4428887	3	4	17	1	0	0	0	0	1	0	0	0	3333	1014	35	3	1634	3	CHAF1A	19	4428887	Missense_Mutation	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10		4428887	54700096	55	1067											
RHPN2	85415	hgsc.bcm.edu	37	chr19	33517507	33517507	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagctcagctccagccgcaCttgctcccgcacctttgagt	9	16	1	1	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	RHPN2,face,carcinoma,0,2	RHPN2	NM_033103	exon3	c.G217A	p.V73M	GCCGCACTTGCTC		22	3	0.14	21	1	0.0476190476		0	2	61	0	0				T	33517507	C	T	33517507	3	4	17	1	0	0	0	0	1	0	0	0	13400	565	20	3	1895	3	RHPN2	19	33517507	Missense_Mutation	SNP	C	TCGA-2G-AAFZ-01A-11D-A42Y-10	29088620	33517507	25611476	56	1068											
LRP3	4037	mdanderson.org	37	chr19	33696583	33696583	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagctggaactgcggctgGgctatgacgactacgtgcag	15	10	0	1	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_002333	exon5	c.G907T	p.G303C	CGGCTGGGCTATG		20	2	0.1	33	0	0				58	0	0				T	33696583	G	T	33696583	3	4	17	1	0	0	0	0	1	0	0	0	9002	1232	43	3	925	3	LRP3	19	33696583	Missense_Mutation	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	179076	33696583	25432400	57	1069											
SIGLEC9	27180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	51628989	51628989	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctggatagggacctccgtgtCccccctggacccctccacca	9	19	0	0	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_001198558	exon2	c.C557T	p.S186F	CCGTGTCCCCCCT		50	18	0.36	65	0	0				2	0	0				T	51628989	C	T	51628989	3	4	17	1	0	0	0	0	1	0	0	0	14369	855	30	3	563	3	SIGLEC9	19	51628989	Missense_Mutation	SNP	C	TCGA-2G-AAFZ-01A-11D-A42Y-10	17932406	51628989	7499994	58	1070											
RBM39	9584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	34300982	34300982	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagagccactcatctgtagaGcttgctgtgctgctggcgga	13	10	2	2	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_184234	exon12	c.C1133T	p.A378V	TGTAGAGCTTGCT		90	38	0.42	88	0	0				429	139	0.32				A	34300982	G	A	34300982	3	1	17	1	0	0	0	0	1	0	0	0	13184	971	34	2	483	2	RBM39	20	34300982	Missense_Mutation	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10		34300982	28724538	59	1071											
TCFL5	10732	bcgsc.ca	37	chr20	61488884	61488884	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttgtgtggcggtggcaccTtcgcccacattctgaatctc	10	14	2	1	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	TCFL5	NM_006602	exon4	c.A1101G	p.E367E	GGCACCTTCGCCC		169	6	0.04	174	0	0		43		72	0	0				C	61488884	T	C	61488884	2	2	17	1	0	0	0	0	0	0	0	1	15758	1606	56	4		4	TCFL5	20	61488884	Silent	SNP	T	TCGA-2G-AAFZ-01A-11D-A42Y-10	27187902	61488884	1536636	60	1072											
ZGPAT	84619	mdanderson.org	37	chr20	62364705	62364705	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacgcagcacgcatcaccgGtgaggctggccgtgggggcc	17	14	1	1	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	ZGPAT,NS,carcinoma,+1,1	ZGPAT	NM_001083113	exon3	c.718+1G>T	.	TCACCGGTGAGGC		48	3	0.06	34	0	0		1	1	3	0	0				T	62364705	G	T	62364705	5	4	17	1	0	0	0	0	0	0	1	0	17731	1275	44	3	725	3	ZGPAT	20	62364705	Splice_Site	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	875821	62364705	660815	61	1073											
TMPRSS15	5651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr21	19666630	19666630	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caccagccagtcactgctgaCgagagatgcgccgcagagca	12	14	1	3	rs202100185	bycluster;by1000genomes	TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_002772	exon21	c.G2443A	p.V815I	TGCTGACGAGAGA		203	11	0.05	155	0	0	0.001			0	0					T	19666630	C	T	19666630	3	4	17	1	0	0	0	0	1	0	0	0	16305	536	19	1	636	1	TMPRSS15	21	19666630	Missense_Mutation	SNP	C	TCGA-2G-AAFZ-01A-11D-A42Y-10		19666630	28463265	62	1074											
B3GALT5	10317	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr21	41032933	41032933	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catcgcttttgtcctcaggcGgcgtttgtgatgaaaacaga	11	9	1	3	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	B3GALT5	NM_033170	exon3	c.G447A	p.A149A	TCAGGCGGCGTTT		205	8	0.04	158	0	0		40		7	2	0.29	rescued with RNA-seq			A	41032933	G	A	41032933	2	1	17	1	0	0	0	0	0	0	0	1	1248	1103	39	1		1	B3GALT5	21	41032933	Silent	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	21366303	41032933	7096962	63	1075											
MN1	4330	hgsc.bcm.edu	37	chr22	28193690	28193690	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcacgtgaccactgtcccTttttctgcgaccccgtcccc	7	19	2	1	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_002430	exon1	c.A2842G	p.R948G	TGTCCCTTTTTCT		73	4	0.05	101	0	0				16	0	0				C	28193690	T	C	28193690	3	2	17	1	0	0	0	0	1	0	0	0	9721	1608	56	4	1128	4	MN1	22	28193690	Missense_Mutation	SNP	T	TCGA-2G-AAFZ-01A-11D-A42Y-10		28193690	23110876	64	1076											
CELSR1	9620	mdanderson.org	37	chr22	46832126	46832126	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atctccagggcgatgaagtcGtgcttctcattgaagcggcc	12	11	2	2	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	.	NM_014246	exon4	c.C4467A	p.H1489Q	GAAGTCGTGCTTC		51	3	0.06	65	0	0				28	0	0				T	46832126	G	T	46832126	3	4	17	1	0	0	0	0	1	0	0	0	3243	1136	40	1	4705	1	CELSR1	22	46832126	Missense_Mutation	SNP	G	TCGA-2G-AAFZ-01A-11D-A42Y-10	18638436	46832126	4472440	65	1077											
ZMYM3	9203	broad.mit.edu	37	chrX	70472909	70472909	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggactccagggtctttttccAggccagcaggggtatcaagc	13	11	2	0	novel		TCGA-2G-AAFZ-01A-11D-A42Y-10	TCGA-2G-AAFZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e4ca9a5-5e0a-43cb-9415-8379c4ef3a09	2499651e-d997-4ae7-bad7-8945ce31b25c	.	ZMYM3	NM_005096	exon2	c.T197C	p.L66P	TTTTCCAGGCCAG		410	9	0.02	208	0	0		137		66	0	0				G	70472909	A	G	70472909	3	3	17	1	0	0	0	0	1	0	0	0	17758	188	7	4	4029	4	ZMYM3	23	70472909	Missense_Mutation	SNP	A	TCGA-2G-AAFZ-01A-11D-A42Y-10		70472909	84797651	66	1078											
MATN1	4146	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	31196429	31196429	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacgggcagcagccggcacGgttgtgggaccagtggggtc	19	11	0	0	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	.	.	.	.	CGGCACGGTTGTG		86	15	0.17	69	0	0				0	0					A	31196429	G	A	31196429	1	1	18	0	1	0	0	0	0	0	0	0	9382	1131	39	1		1	MATN1	1	31196429	RNA	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10		31196429	218054192	1	1079											
GPBP1L1	60313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	46124749	46124749	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gccaagcaggaacaaaatcaTgctgcgccatttaggtccag	10	11	1	0	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_021639	exon4	c.A11C	p.H4P	AAATCATGCTGCG		85	8	0.09	46	0	0				248	69	0.28				G	46124749	T	G	46124749	3	3	18	1	0	0	0	0	1	0	0	0	6635	1464	51	4	1453	4	GPBP1L1	1	46124749	Missense_Mutation	SNP	T	TCGA-2G-AAG0-01A-11D-A42Y-10	14928320	46124749	203125872	2	1080											
LPPR5	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	99470160	99470160	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtagtacgccagcatcaccGtccctgccatgatcaccatc	7	16	2	1	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001037317	exon1	c.C68T	p.T23M	ATCACCGTCCCTG		134	21	0.16	165	0	0				0	0					A	99470160	G	A	99470160	3	1	18	1	0	0	0	0	1	0	0	0	8972	1145	40	1	921	1	LPPR5	1	99470160	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	53345411	99470160	149780461	3	1081											
PHGDH	26227	mdanderson.org	37	chr1	120277316	120277316	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcctttggtgttcagcaGctgcccctggaggagatctg	13	12	2	1	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_006623	exon6	c.G570T	p.Q190H	TCAGCAGCTGCCC		36	3	0.08	51	0	0				560	0	0				T	120277316	G	T	120277316	3	4	18	1	0	0	0	0	1	0	0	0	11888	962	34	2	592	2	PHGDH	1	120277316	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	20807156	120277316	128973305	4	1082											
BCL9	607	broad.mit.edu	37	chr1	147092151	147092151	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcaacatgggatccaactcTcagatgatacctcagaagat	8	10	3	4	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	BCL9	NM_004326	exon8	c.T2190C	p.S730S	CAACTCTCAGATG		145	3	0.02	86	0	0		150		42	0	0				C	147092151	T	C	147092151	2	2	18	1	0	0	0	0	0	0	0	1	1379	1538	54	4		4	BCL9	1	147092151	Silent	SNP	T	TCGA-2G-AAG0-01A-11D-A42Y-10	26814835	147092151	102158470	5	1083											
RUSC1	23623	broad.mit.edu	37	chr1	155292770	155292770	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtcccgccccggcccccAcccccgcctgtccctccccg	8	26	0	0	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	RUSC1	NM_001105204	exon2	c.A1206C	p.P402P	GCCCCCACCCCCG		36	17	0.47	36	10	0.2777777778		85		0	0					C	155292770	A	C	155292770	2	2	18	1	0	0	0	0	0	0	0	1	13801	146	6	4		4	RUSC1	1	155292770	Silent	SNP	A	TCGA-2G-AAG0-01A-11D-A42Y-10	8200619	155292770	93957851	6	1084											
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	197115320	197115320	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagcccaggtccgcggccGggaagtgggagatcttcact	15	11	2	2	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001206846	exon1	c.C248A	p.P83Q	GCGGCCGGGAAGT		106	20	0.19	71	0	0				5	3	0.6				T	197115320	G	T	197115320	3	4	18	1	0	0	0	0	1	0	0	0	1055	1116	39	1	10297	1	ASPM	1	197115320	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	41822550	197115320	52135301	7	1085											
RANBP2	5903	broad.mit.edu	37	chr2	109382805	109382805	+	Frame_Shift_Del	DEL	T	T	-													gaagaatggccgtggtgtgaTttttggccaaacaagtagca					novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	RANBP2	NM_006267	exon20	c.5810delT	p.I1937fs	GTGTGATTTTTGG		1320	7	0.01	1255	0	0		488		23	0	0				-	109382805	T	-	109382805	7	5	18	1	0	1	0	1	0	0	0	0	13079	1493	52	0	5888	0	RANBP2	2	109382805	Frame_Shift_Del	DEL	T	TCGA-2G-AAG0-01A-11D-A42Y-10		109382805	133816568	8	1086											
EPB41L5	57669	mdanderson.org	37	chr2	120844774	120844774	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ataaccagattggattttaaGaagaataaattaaccttggt	7	4	0	3	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001184938	exon11	c.G831T	p.K277N	TTTTAAGAAGAAT		48	3	0.06	56	0	0				23	0	0				T	120844774	G	T	120844774	3	4	18	1	0	0	0	0	1	0	0	0	5185	933	33	3	869	3	EPB41L5	2	120844774	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	11461969	120844774	122354599	9	1087											
LCT	3938	mdanderson.org	37	chr2	136545926	136545926	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caccgggctcaattcctgttGgcttcgttgtgttttccctt	9	12	1	0	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_002299	exon17	c.C5752A	p.Q1918K	CCTGTTGGCTTCG		45	3	0.07	54	0	0				2	0	0				T	136545926	G	T	136545926	3	4	18	1	0	0	0	0	1	0	0	0	8731	1357	47	3	35	3	LCT	2	136545926	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	15701152	136545926	106653447	10	1088											
SCN9A	6335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	167085326	167085326	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acgatttggaacttgacttgCaggaaaccgtgacccatctg	10	10	1	2	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_002977	exon22	c.G4048C	p.A1350P	GACTTGCAGGAAA		111	6	0.05	111	0	0				0	0					G	167085326	C	G	167085326	3	3	18	1	0	0	0	0	1	0	0	0	13978	710	25	5	1909	5	SCN9A	2	167085326	Missense_Mutation	SNP	C	TCGA-2G-AAG0-01A-11D-A42Y-10	30539400	167085326	76114047	11	1089											
TTN	7273	bcgsc.ca	37	chr2	179480494	179480494	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atcaggaactgtgaattctaGatcagtcacaaagtccataa	7	8	4	2	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	TTN	NM_001267550	exon258	c.C48334A	p.L16112I	ATTCTAGATCAGT		161	6	0.04	146	0	0		18412		1	0	0				T	179480494	G	T	179480494	3	4	18	1	0	0	0	0	1	0	0	0	16796	933	33	3	59779	3	TTN	2	179480494	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	12395168	179480494	63718879	12	1090											
GULP1	51454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	189452633	189452633	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccatttaactgtggagcagCagatttccctccagatattc	7	12	0	2	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_016315	exon11	c.C800T	p.A267V	GAGCAGCAGATTT		289	48	0.17	317	0	0				14	4	0.29				T	189452633	C	T	189452633	3	4	18	1	0	0	0	0	1	0	0	0	6941	710	25	2	834	2	GULP1	2	189452633	Missense_Mutation	SNP	C	TCGA-2G-AAG0-01A-11D-A42Y-10	9972139	189452633	53746740	13	1091											
SLC6A6	6533	hgsc.bcm.edu	37	chr3	14508094	14508094	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtccgagggctgacgctgcCgggcgcgggcgcaggcatca	19	13	1	1	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	SLC6A6,NS,malignant_melanoma,0,2	SLC6A6	NM_003043	exon7	c.C803T	p.P268L	CGCTGCCGGGCGC		31	2	0.06	36	0	0		0	2	20	0	0				T	14508094	C	T	14508094	3	4	18	1	0	0	0	0	1	0	0	0	14742	652	23	1	825	1	SLC6A6	3	14508094	Missense_Mutation	SNP	C	TCGA-2G-AAG0-01A-11D-A42Y-10		14508094	183514336	14	1092											
SUCLG2	8801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	67578573	67578573	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taccttgttaactttcacacCttcttttggagtttgttttg	6	8	2	0	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	SUCLG2_ENST00000493112,NS,carcinoma,0,3	SUCLG2_ENST00000493112	NM_001177599	exon4	c.G400A	p.G134S	TCACACCTTCTTT		72	7	0.1	75	0	0		0	3	17	6	0.35				T	67578573	C	T	67578573	3	4	18	1	0	0	0	0	1	0	0	0	15420	681	24	3	1074	3	SUCLG2	3	67578573	Missense_Mutation	SNP	C	TCGA-2G-AAG0-01A-11D-A42Y-10	53070479	67578573	130443857	15	1093											
CHMP2B	25978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	87289878	87289878	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aggaacagaatcgagagttaCgaggtacacagagggctata	13	6	0	3	rs138886714	bycluster;byfrequency;alternate_allele	TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_014043	exon2	c.C64G	p.R22G	GAGTTACGAGGTA		252	52	0.21	281	0	0				81	17	0.21				G	87289878	C	G	87289878	3	3	18	1	0	0	0	0	1	0	0	0	3377	528	19	5	70	5	CHMP2B	3	87289878	Missense_Mutation	SNP	C	TCGA-2G-AAG0-01A-11D-A42Y-10	19711305	87289878	110732552	16	1094											
DIRC2	84925	hgsc.bcm.edu	37	chr3	122579034	122579034	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttgaacagcatcacacacCtacctttaaccacaggtgag	7	12	1	2	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_032839	exon7	c.C1123A	p.L375I	ACACACCTACCTT		124	5	0.04	122	0	0				47	0	0				A	122579034	C	A	122579034	3	1	18	1	0	0	0	0	1	0	0	0	4562	680	24	3	1149	3	DIRC2	3	122579034	Missense_Mutation	SNP	C	TCGA-2G-AAG0-01A-11D-A42Y-10	35289156	122579034	75443396	17	1095											
PLXNA1	5361	mdanderson.org	37	chr3	126734047	126734047	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	acaccaaccttctaccgtgtGagcccctcccgtgggcctct	8	18	2	1	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_032242	exon14	c.G2898T	p.V966V	CCGTGTGAGCCCC		45	3	0.07	51	0	0				12	0	0				T	126734047	G	T	126734047	2	4	18	1	0	0	0	0	0	0	0	1	12166	1277	45	3		3	PLXNA1	3	126734047	Silent	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	4155013	126734047	71288383	18	1096											
GFM1	85476	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr3	158376767	158376767	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcagggagagctaaagaaGggtgacaccatctataacac	10	8	2	3	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_024996	exon9	c.G1140T	p.K380N	AAAGAAGGGTGAC		70	5	0.07	58	0	0				42	0	0				T	158376767	G	T	158376767	3	4	18	1	0	0	0	0	1	0	0	0	6382	991	35	3	1174	3	GFM1	3	158376767	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	31642720	158376767	39645663	19	1097											
KLB	152831	bcgsc.ca	37	chr4	39448347	39448347	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctgaacccatcgacggcCgaggccttccaggcctacgc	12	16	0	1	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	KLB	NM_175737	exon4	c.C2001A	p.A667A	GACGGCCGAGGCC		42	4	0.1	34	0	0		95		0	0					A	39448347	C	A	39448347	2	1	18	1	0	0	0	0	0	0	0	1	8374	639	23	1		1	KLB	4	39448347	Silent	SNP	C	TCGA-2G-AAG0-01A-11D-A42Y-10		39448347	151705929	20	1098											
BMP2K	55589	broad.mit.edu	37	chr4	79793947	79793947	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atggactcctcctatagtgcCaataggcaagtatttttcca	7	10	0	0	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	BMP2K	NM_017593	exon13	c.C1788T	p.A596A	TAGTGCCAATAGG		109	5	0.05	154	0	0		169		3	0	0				T	79793947	C	T	79793947	2	4	18	1	0	0	0	0	0	0	0	1	1459	581	21	3		3	BMP2K	4	79793947	Silent	SNP	C	TCGA-2G-AAG0-01A-11D-A42Y-10	40345600	79793947	111360329	21	1099											
CYP2U1	113612	mdanderson.org	37	chr4	108853024	108853024	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggcaacttcggtcacgtGctgctgcctcccttcctccg	11	16	1	0	rs145192019	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_183075	exon1	c.G225T	p.V75V	TCACGTGCTGCTG		20	2	0.1	39	0	0				1	0	0				T	108853024	G	T	108853024	2	4	18	1	0	0	0	0	0	0	0	1	4198	1306	46	2		2	CYP2U1	4	108853024	Silent	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	29059077	108853024	82301252	22	1100											
TAS2R1	50834	mdanderson.org	37	chr5	9629567	9629567	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaatcaagagcaaaacaGcaaaaaggaagataagcaat	8	5	1	3	rs185412063	bycluster;by1000genomes	TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_019599	exon1	c.C578A	p.A193D	AAAACAGCAAAAA		44	3	0.07	57	0	0	0.001			0	0					T	9629567	G	T	9629567	3	4	18	1	0	0	0	0	1	0	0	0	15621	971	34	2	325	2	TAS2R1	5	9629567	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10		9629567	171285693	23	1101											
SLC23A1	9963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	138713761	138713761	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aagaggttgcgagaggagttCatgtccacaaattgcaggtt	13	6	1	2	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_152685	exon12	c.G1368A	p.M456I	GGAGTTCATGTCC		83	14	0.17	76	0	0				1	0	0				T	138713761	C	T	138713761	3	4	18	1	0	0	0	0	1	0	0	0	14516	826	29	3	452	3	SLC23A1	5	138713761	Missense_Mutation	SNP	C	TCGA-2G-AAG0-01A-11D-A42Y-10	129084194	138713761	42201499	24	1102											
PCDHB13	56123	mdanderson.org	37	chr5	140595340	140595340	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcgaggcgctggtgcgcGtggtggtgctggacgccaac	19	11	0	0	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	PCDHB13,NS,neuroblastoma,-2,1	PCDHB13	NM_018933	exon1	c.G1645T	p.V549L	GTGCGCGTGGTGG		44	3	0.07	24	0	0		-2	1	1	0	0				T	140595340	G	T	140595340	3	4	18	1	0	0	0	0	1	0	0	0	11584	1145	40	1	1647	1	PCDHB13	5	140595340	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	1881579	140595340	40319920	25	1103											
PCDHGA9	56107	bcgsc.ca;mdanderson.org	37	chr5	140782626	140782626	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagattcgctactcagtgcCtgaagagacagaaaagggct	11	9	2	4	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	PCDHGA9	NM_032089	exon1	c.C107A	p.P36H	CAGTGCCTGAAGA		103	5	0.05	78	0	0		110		0	0					A	140782626	C	A	140782626	3	1	18	1	0	0	0	0	1	0	0	0	11607	681	24	3	109	3	PCDHGA9	5	140782626	Missense_Mutation	SNP	C	TCGA-2G-AAG0-01A-11D-A42Y-10	187286	140782626	40132634	26	1104											
IRF4	3662	broad.mit.edu;bcgsc.ca	37	chr6	393255	393255	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcgaccagatcgacagcGgcaagtaccccgggctggtg	14	12	0	2	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	IRF4	NM_001195286	exon2	c.G103T	p.G35C	GACAGCGGCAAGT		149	24	0.16	127	1	0.0078740157		65		5	0	0				T	393255	G	T	393255	3	4	18	1	0	0	0	0	1	0	0	0	7875	1116	39	1	105	1	IRF4	6	393255	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10		393255	170721812	27	1105											
DDAH2	23564	broad.mit.edu	37	chr6	31695404	31695404	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggacgaagaaagagacaGtcagcagctgcgtcatctgg	13	10	3	2	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	DDAH2	NM_013974	exon6	c.C657A	p.D219E	GAGACAGTCAGCA		71	3	0.04	54	0	0		15		162	0	0				T	31695404	G	T	31695404	3	4	18	1	0	0	0	0	1	0	0	0	4345	1020	36	3	208	3	DDAH2	6	31695404	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	31302149	31695404	139419663	28	1106											
MDGA1	266727	mdanderson.org	37	chr6	37611668	37611668	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggggactcactaaccttGcacggtcccccagctcccga	10	16	1	1	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_153487	exon14	c.C2453A	p.A818E	AACCTTGCACGGT		50	3	0.06	62	0	0				13	0	0				T	37611668	G	T	37611668	3	4	18	1	0	0	0	0	1	0	0	0	9455	1319	46	2	430	2	MDGA1	6	37611668	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	5916264	37611668	133503399	29	1107											
PM20D2	135293	mdanderson.org	37	chr6	89862893	89862893	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcaaatgaaaccaacctGgagagttcatggtatgaatg	10	7	1	3	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001010853	exon3	c.G746T	p.W249L	CAACCTGGAGAGT		45	3	0.07	45	0	0				2	0	0				T	89862893	G	T	89862893	3	4	18	1	0	0	0	0	1	0	0	0	12176	1357	47	3	756	3	PM20D2	6	89862893	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	52251225	89862893	81252174	30	1108											
MEOX2	4223	mdanderson.org	37	chr7	15725827	15725827	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtggtggtggtggtggtgCcccctgtgatgctggctggc	20	8	0	1	rs374499365	alternate_allele	TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_005924	exon1	c.G201T	p.G67G	GTGGTGCCCCCTG		53	3	0.06	38	0	0				1	0	0				A	15725827	C	A	15725827	2	1	18	1	0	0	0	0	0	0	0	1	9523	726	26	2		2	MEOX2	7	15725827	Silent	SNP	C	TCGA-2G-AAG0-01A-11D-A42Y-10		15725827	143412836	31	1109											
DGKI	9162	broad.mit.edu;mdanderson.org	37	chr7	137266651	137266651	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaatccaaggctgaagtaGttattgaaaacattcagagg	9	6	2	3	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	DGKI_ENST00000288490,NS,carcinoma,0,2	DGKI	NM_004717	exon15	c.C1587A	p.N529K	GAAGTAGTTATTG		50	3	0.06	44	0	0		335	2	1	0	0				T	137266651	G	T	137266651	3	4	18	1	0	0	0	0	1	0	0	0	4499	1020	36	3	1690	3	DGKI	7	137266651	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	121540824	137266651	21872012	32	1110											
TRIM24	8805	mdanderson.org	37	chr7	138266446	138266446	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atttatttttgcttagaagtGtgagcgcctacttttatttc	7	6	0	2	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_015905	exon17	c.G2723T	p.C908F	AGAAGTGTGAGCG		44	3	0.07	40	0	0				118	0	0				T	138266446	G	T	138266446	3	4	18	1	0	0	0	0	1	0	0	0	16558	1377	48	3	2789	3	TRIM24	7	138266446	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	999795	138266446	20872217	33	1111											
PARP12	64761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr7	139756947	139756947	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atctcctttgttgtaatgttGgcaaatctgttgacagagag	10	6	2	2	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_022750	exon3	c.C469T	p.Q157X	AATGTTGGCAAAT		40	11	0.28	44	0	0				29	3	0.1				A	139756947	G	A	139756947	4	1	18	1	0	0	0	0	0	1	0	0	11503	1357	47	3	1676	3	PARP12	7	139756947	Nonsense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	1490501	139756947	19381716	34	1112											
LAPTM4B	55353	mdanderson.org	37	chr8	98817595	98817595	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcagatcatcaatgctgtGgtactgttgattttattgag	10	5	2	3	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_018407	exon2	c.G387T	p.V129V	TGCTGTGGTACTG		53	3	0.06	27	0	0				578	0	0				T	98817595	G	T	98817595	2	4	18	1	0	0	0	0	0	0	0	1	8663	1335	47	3		3	LAPTM4B	8	98817595	Silent	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10		98817595	47546427	35	1113											
TRPS1	7227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr8	116599271	116599271	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccttggacttgttttctcccGatgcaggatactgctggggg	13	10	1	0	rs142472404	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_014112	exon5	c.C2657A	p.S886X	TCTCCCGATGCAG		67	9	0.13	59	0	0				1	0	0				T	116599271	G	T	116599271	4	4	18	1	0	0	0	0	0	1	0	0	16653	1059	37	1	1239	1	TRPS1	8	116599271	Nonsense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	17781676	116599271	29764751	36	1114											
APBA1	320	hgsc.bcm.edu	37	chr9	72064657	72064657	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggaggatggatccccagCcagactccacaatcaccaca	10	14	1	1	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001163	exon10	c.G2024A	p.G675D	CCCCAGCCAGACT		88	4	0.05	75	0	0				2	0	0				T	72064657	C	T	72064657	3	4	18	1	0	0	0	0	1	0	0	0	752	739	26	2	505	2	APBA1	9	72064657	Missense_Mutation	SNP	C	TCGA-2G-AAG0-01A-11D-A42Y-10		72064657	69148774	37	1115											
SEMA4D	10507	hgsc.bcm.edu;mdanderson.org	37	chr9	91994111	91994111	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgccggtgggcgcaggcttGggaggaagggtgatggcccc	21	9	0	1	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_006378	exon18	c.C2097A	p.P699P	AGGCTTGGGAGGA		60	4	0.07	67	0	0				77	0	0				T	91994111	G	T	91994111	2	4	18	1	0	0	0	0	0	0	0	1	14087	1335	47	3		3	SEMA4D	9	91994111	Silent	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	19929454	91994111	49219320	38	1116											
KIAA1958	158405	mdanderson.org	37	chr9	115421828	115421828	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgaggaggagatgtggcagGcagggtgtctgggggatgac	21	5	1	2	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	KIAA1958,NS,carcinoma,0,1	KIAA1958	NM_133465	exon4	c.G1630T	p.A544S	TGGCAGGCAGGGT		120	5	0.04	129	0	0		0	1	7	0	0				T	115421828	G	T	115421828	3	4	18	1	0	0	0	0	1	0	0	0	8305	1203	42	2	1640	2	KIAA1958	9	115421828	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	23427717	115421828	25791603	39	1117											
OR1L8	138881	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	125330483	125330485	+	In_Frame_Del	DEL	TCT	TCT	-													acacccagcataggagatggTcttcttttctgacaggaagt					novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	TCT	TCT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	OR1L8	NM_001004454	exon1	c.273_275del	p.91_92del	AGATGGTCTTCTT		54	10	0.19	68	0	0		90		0	0					-	125330485	TCT	-	125330483	7	5	18	1	0	1	0	1	0	0	0	0	11014	1667	58	0	659	0	OR1L8	9	125330483	In_Frame_Del	DEL	TCT	TCGA-2G-AAG0-01A-11D-A42Y-10	9908655	125330483	15882948	40	1118											
GFI1B	8328	mdanderson.org	37	chr9	135866307	135866307	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaaaggccttcagccagaGctccaacctcatcacccaca	7	17	3	1	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_004188	exon7	c.G863T	p.S288I	GCCAGAGCTCCAA		45	3	0.07	58	0	0				0	0					T	135866307	G	T	135866307	3	4	18	1	0	0	0	0	1	0	0	0	6381	971	34	2	885	2	GFI1B	9	135866307	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	10535824	135866307	5347124	41	1119											
RALGDS	5900	mdanderson.org	37	chr9	135984157	135984157	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggcatgttgagctgcacGtaggccaccagctgcttgag	13	12	0	2	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_006266	exon5	c.C681A	p.Y227X	CTGCACGTAGGCC		38	3	0.08	47	0	0				29	0	0				T	135984157	G	T	135984157	4	4	18	1	0	0	0	0	0	1	0	0	13067	1140	40	1	2119	1	RALGDS	9	135984157	Nonsense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	117850	135984157	5229274	42	1120											
FRMD4A	55691	mdanderson.org	37	chr10	13698833	13698833	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagacggcggcacggcccGcgcccttgtcgtgggcgccc	16	17	0	1	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	FRMD4A,colon,carcinoma,0,1	FRMD4A	NM_018027	exon22	c.C2756A	p.A919E	CGGCCCGCGCCCT		18	2	0.11	20	0	0		0	1	0	0					T	13698833	G	T	13698833	3	4	18	1	0	0	0	0	1	0	0	0	6085	1087	38	1	375	1	FRMD4A	10	13698833	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10		13698833	121835914	43	1121											
ARMC3	219681	broad.mit.edu	37	chr10	23270572	23270572	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtgacaatgaagaggtacGggaagcagcagctctagccc	13	9	1	3	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	ARMC3	NM_173081	exon10	c.G1118A	p.R373Q	AGGTACGGGAAGC		44	9	0.2	71	2	0.0281690141		102		0	0					A	23270572	G	A	23270572	3	1	18	1	0	0	0	0	1	0	0	0	951	1116	39	1	1152	1	ARMC3	10	23270572	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	9571739	23270572	112264175	44	1122											
RTKN2	219790	broad.mit.edu	37	chr10	63995874	63995874	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatcatcctcttcttgaaGcactgaacttattttctttc	3	11	5	2	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	RTKN2	NM_145307	exon6	c.C637A	p.L213I	CTTGAAGCACTGA		88	4	0.05	98	0	0		68		4	0	0				T	63995874	G	T	63995874	3	4	18	1	0	0	0	0	1	0	0	0	13774	971	34	2	1220	2	RTKN2	10	63995874	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	40725302	63995874	71538873	45	1123											
MUC2	4583	mdanderson.org	37	chr11	1093292	1093292	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcgacacccatcaccaccaCcactacggtgaccccaaccc	4	21	1	1	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_002457	exon30	c.C5111T	p.T1704I	CCACCACCACTAC		23	3	0.13	25	1	0.04				0	0					T	1093292	C	T	1093292	3	4	18	1	0	0	0	0	1	0	0	0	10022	507	18	3	5229	3	MUC2	11	1093292	Missense_Mutation	SNP	C	TCGA-2G-AAG0-01A-11D-A42Y-10		1093292	133913224	46	1124											
NUMA1	4926	mdanderson.org	37	chr11	71715103	71715103	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgttccctagcttcttggGtgtgttgaggatgctgaagg	15	7	1	2	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_006185	exon26	c.C6166T	p.P2056S	TCTTGGGTGTGTT		67	7	0.1	55	0	0				198	29	0.15				A	71715103	G	A	71715103	3	1	18	1	0	0	0	0	1	0	0	0	10797	1261	44	3	189	3	NUMA1	11	71715103	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	70621811	71715103	63291413	47	1125											
DSCAML1	57453	mdanderson.org	37	chr11	117329471	117329471	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagaggcctggactcaccGtcctccttggtctggatgta	13	11	2	1	rs150682070	bycluster;alternate_allele	TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_020693	exon19	c.C3747A	p.D1249E	CTCACCGTCCTCC		23	3	0.13	29	0	0				0	0					T	117329471	G	T	117329471	3	4	18	1	0	0	0	0	1	0	0	0	4795	1159	40	1	2654	1	DSCAML1	11	117329471	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	45614368	117329471	17677045	48	1126											
BSX	390259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	122848423	122848423	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tccacctcgtcctctggctcGgtcagcacgaagggaccggc	12	16	2	0	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001098169	exon3	c.C636G	p.T212T	TGGCTCGGTCAGC		30	8	0.27	39	0	0				0	0					C	122848423	G	C	122848423	2	2	18	1	0	0	0	0	0	0	0	1	1537	1103	39	5		5	BSX	11	122848423	Silent	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	5518952	122848423	12158093	49	1127											
OR10S1	219873	mdanderson.org	37	chr11	123847415	123847415	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcacagactatgggggtggGctgcctgctgtagactctcg	15	10	1	2	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001004474	exon1	c.C984T	p.S328S	GGGTGGGCTGCCT		35	3	0.09	42	0	0				0	0					A	123847415	G	A	123847415	2	1	18	1	0	0	0	0	0	0	0	1	10965	1194	42	2		2	OR10S1	11	123847415	Silent	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	998992	123847415	11159101	50	1128											
ST14	6768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	130068300	130068300	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gactgcggagacaacagcgaCgagcaggggtgcagtgagtg	18	8	0	2	rs367833176		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	ST14,caecum,carcinoma,0,1	ST14	NM_021978	exon13	c.C1557T	p.D519D	CAGCGACGAGCAG		116	7	0.06	115	0	0		0	1	61	10	0.16				T	130068300	C	T	130068300	2	4	18	1	0	0	0	0	0	0	0	1	15266	535	19	1		1	ST14	11	130068300	Silent	SNP	C	TCGA-2G-AAG0-01A-11D-A42Y-10	6220885	130068300	4938216	51	1129											
NANOG	79923	broad.mit.edu	37	chr12	7947397	7947397	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aacaattcaacctggagcaaCcagacccagaacatccagtc	6	14	1	2	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	NANOG	NM_024865	exon4	c.C624G	p.N208K	GAGCAACCAGACC		310	29	0.09	202	0	0		30		882	119	0.13				G	7947397	C	G	7947397	3	3	18	1	0	0	0	0	1	0	0	0	10197	506	18	5	638	5	NANOG	12	7947397	Missense_Mutation	SNP	C	TCGA-2G-AAG0-01A-11D-A42Y-10		7947397	125904498	52	1130											
TAS2R46	259292	hgsc.bcm.edu	37	chr12	11214498	11214498	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aatagcaaaggccccaatagTatcaccagaacaacactctt	5	12	2	1	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_176887	exon1	c.A396G	p.I132M	CAATAGTATCACC		144	7	0.05	102	0	0				0	0					C	11214498	T	C	11214498	3	2	18	1	0	0	0	0	1	0	0	0	15638	1628	57	4	537	4	TAS2R46	12	11214498	Missense_Mutation	SNP	T	TCGA-2G-AAG0-01A-11D-A42Y-10	3267101	11214498	122637397	53	1131											
LTB4R2	56413	mdanderson.org	37	chr14	24780818	24780818	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctctggggaggcccgaggGggcggccgctctagggaagg	22	10	2	0	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_019839	exon2	c.G948T	p.G316G	CCGAGGGGGCGGC		20	3	0.15	30	0	0				4	0	0				T	24780818	G	T	24780818	2	4	18	1	0	0	0	0	0	0	0	1	9116	1219	43	3		3	LTB4R2	14	24780818	Silent	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10		24780818	82568722	54	1132											
NKX2-1	7080	bcgsc.ca	37	chr14	36988452	36988452	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcctgtacgccgccagCggagccccgaggccgccgcc	13	21	0	0	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	NKX2-1	NM_001079668	exon2	c.G201A	p.P67P	CGCCAGCGGAGCC		51	4	0.08	61	0	0		21		0	0					T	36988452	C	T	36988452	2	4	18	1	0	0	0	0	0	0	0	1	10495	755	27	1		1	NKX2-1	14	36988452	Silent	SNP	C	TCGA-2G-AAG0-01A-11D-A42Y-10	12207634	36988452	70361088	55	1133											
SLC8A3	6547	mdanderson.org	37	chr14	70512975	70512975	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attgacggcgttgctgcccgTcacgttgccaatggaggcgt	14	11	1	1	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_183002	exon8	c.A2473G	p.T825A	TGCCCGTCACGTT		50	3	0.06	75	0	0				0	0					C	70512975	T	C	70512975	3	2	18	1	0	0	0	0	1	0	0	0	14762	1667	58	4	314	4	SLC8A3	14	70512975	Missense_Mutation	SNP	T	TCGA-2G-AAG0-01A-11D-A42Y-10	33524523	70512975	36836565	56	1134											
RIN3	79890	mdanderson.org	37	chr14	93118316	93118316	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctcttgcccccgcccctGcctgtcctttgcccacctct	6	22	2	0	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_024832	exon6	c.G922T	p.A308S	GCCCCTGCCTGTC		29	3	0.1	22	0	0				3	0	0				T	93118316	G	T	93118316	3	4	18	1	0	0	0	0	1	0	0	0	13424	1319	46	2	944	2	RIN3	14	93118316	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	22605341	93118316	14231224	57	1135											
TCF12	6938	mdanderson.org	37	chr15	57574716	57574716	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttctgccgtatcggcagaGccgccaaccacactgccagg	11	15	1	1	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_207037	exon20	c.G2052T	p.E684D	GGCAGAGCCGCCA		28	3	0.11	40	0	0				20	0	0				T	57574716	G	T	57574716	3	4	18	1	0	0	0	0	1	0	0	0	15746	962	34	2	2199	2	TCF12	15	57574716	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10		57574716	44956676	58	1136											
ACAN	176	hgsc.bcm.edu	37	chr15	89399983	89399983	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actgctgcccctggagtagaGgacatcagcgggcttccttc	12	13	1	1	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	AGC1,NS,carcinoma,+2,4	AGC1	NM_001135	exon12	c.G4167T	p.E1389D	AGTAGAGGACATC		55	3	0.05	49	2	0.0408163265		2	4	3	0	0				T	89399983	G	T	89399983	3	4	18	1	0	0	0	0	1	0	0	0	117	991	35	3	4209	3	ACAN	15	89399983	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	31825267	89399983	13131409	59	1137											
ZNF75A	7627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	3367499	3367499	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaaaccttcagagttagctCtgaccttattaagcaccaaa	6	10	2	2	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_153028	exon6	c.C521G	p.S174C	TTAGCTCTGACCT		195	37	0.19	146	0	0				100	32	0.32				G	3367499	C	G	3367499	3	3	18	1	0	0	0	0	1	0	0	0	18182	913	32	5	531	5	ZNF75A	16	3367499	Missense_Mutation	SNP	C	TCGA-2G-AAG0-01A-11D-A42Y-10		3367499	86987254	60	1138											
CAPNS2	84290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	55601279	55601279	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgctaatgaagatggagataTggattttaacaatttcatca	8	4	2	3	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_032330	exon1	c.T611A	p.M204K	GAGATATGGATTT		131	19	0.15	119	0	0				0	0					A	55601279	T	A	55601279	3	1	18	1	0	0	0	0	1	0	0	0	2652	1464	51	5	613	5	CAPNS2	16	55601279	Missense_Mutation	SNP	T	TCGA-2G-AAG0-01A-11D-A42Y-10	52233780	55601279	34753474	61	1139											
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	76555039	76555039	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttttttcacaaaacaggaTcattttggaattcagcttcc	5	8	3	0	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	CNTNAP4_ENST00000478060,NS,carcinoma,-1,2	CNTNAP4_ENST00000478060	NM_138994	exon15	c.T2149C	p.S717P	ACAGGATCATTTT		76	25	0.33	73	1	0.0136986301		-1	2	0	0					C	76555039	T	C	76555039	3	2	18	1	0	0	0	0	1	0	0	0	3672	1435	50	4	2443	4	CNTNAP4	16	76555039	Missense_Mutation	SNP	T	TCGA-2G-AAG0-01A-11D-A42Y-10	20953760	76555039	13799714	62	1140											
CPNE7	27132	bcgsc.ca	37	chr16	89643986	89643986	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccggagcagcctgcatcccGtgttctccaaggtcttcacg	10	15	3	0	rs369719899		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	CPNE7	NM_153636	exon2	c.G214A	p.V72M	CATCCCGTGTTCT		58	4	0.07	61	0	0		56		7	0	0				A	89643986	G	A	89643986	3	1	18	1	0	0	0	0	1	0	0	0	3840	1145	40	1	220	1	CPNE7	16	89643986	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	13088947	89643986	710767	63	1141											
RPL26	6154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr17	8280958	8280958	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggcgagatttggctttcCgttcgaggatctttttgcgg	13	8	1	1	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_000987	exon4	c.G362T	p.R121L	GCTTTCCGTTCGA		10	4	0.4	15	0	0				11087	3407	0.31				A	8280958	C	A	8280958	3	1	18	1	0	0	0	0	1	0	0	0	13624	652	23	1	79	1	RPL26	17	8280958	Missense_Mutation	SNP	C	TCGA-2G-AAG0-01A-11D-A42Y-10		8280958	72914252	64	1142											
MYH10	4628	mdanderson.org	37	chr17	8526560	8526560	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcgagtccagttctctgcGccattgtaaatggaacgatc	9	12	1	0	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_005964	exon2	c.C5A	p.A2E	CTCTGCGCCATTG		39	3	0.08	34	0	0				32	0	0				T	8526560	G	T	8526560	3	4	18	1	0	0	0	0	1	0	0	0	10077	1087	38	1	6085	1	MYH10	17	8526560	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	245602	8526560	72668650	65	1143											
THRA	7067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	38244622	38244622	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggagatggctgtcaagcGggagcagctcaagaatggcg	18	7	2	2	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	THRA_ENST00000450525,NS,carcinoma,0,1	THRA_ENST00000450525	NM_001190918	exon8	c.G851A	p.R284Q	TCAAGCGGGAGCA		62	14	0.23	58	0	0		0	1	18	5	0.28				A	38244622	G	A	38244622	3	1	18	1	0	0	0	0	1	0	0	0	15932	1116	39	1	877	1	THRA	17	38244622	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	29718062	38244622	42950588	66	1144											
ITGA2B	3674	mdanderson.org	37	chr17	42460945	42460945	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtgccagtcagcaggaGgctgggggcacccagcgcgt	17	12	1	0	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_000419	exon12	c.C1126A	p.L376I	GCAGGAGGCTGGG		47	3	0.06	58	0	0				7	0	0				T	42460945	G	T	42460945	3	4	18	1	0	0	0	0	1	0	0	0	7919	1000	35	3	2069	3	ITGA2B	17	42460945	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	4216323	42460945	38734265	67	1145											
CRHR1	1394	mdanderson.org	37	chr17	43898754	43898754	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtgcctggccaatggcaGctgggccgcccgcgtgaatt	16	12	0	1	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001145148	exon4	c.G275T	p.S92I	ATGGCAGCTGGGC		32	3	0.09	32	0	0				0	0					T	43898754	G	T	43898754	3	4	18	1	0	0	0	0	1	0	0	0	3894	971	34	2	289	2	CRHR1	17	43898754	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	1437809	43898754	37296456	68	1146											
PTPRS	5802	mdanderson.org	37	chr19	5212050	5212050	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctggatgtaggcatagaGgctgcgtgcgggcacttctg	15	9	2	1	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_002850	exon32	c.C4981A	p.L1661I	CATAGAGGCTGCG		35	3	0.09	44	0	0				46	0	0				T	5212050	G	T	5212050	3	4	18	1	0	0	0	0	1	0	0	0	12862	1000	35	3	893	3	PTPRS	19	5212050	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10		5212050	53916933	69	1147											
MAP1S	55201	broad.mit.edu;mdanderson.org	37	chr19	17838362	17838362	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgagcctcccgctgcgtggCccccgggcgcggcgctcggc	16	19	0	1	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	MAP1S	NM_018174	exon5	c.C2169A	p.G723G	GCGTGGCCCCCGG		28	9	0.32	23	0	0		74		67	30	0.45				A	17838362	C	A	17838362	2	1	18	1	0	0	0	0	0	0	0	1	9283	726	26	2		2	MAP1S	19	17838362	Silent	SNP	C	TCGA-2G-AAG0-01A-11D-A42Y-10	12626312	17838362	41290621	70	1148											
KLHL26	55295	mdanderson.org	37	chr19	18779747	18779747	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggccgcatctatgccctcGggggccgcatggaccacgtg	15	15	1	0	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	KLHL26,NS,carcinoma,0,1	KLHL26	NM_018316	exon3	c.G1540T	p.G514W	GCCCTCGGGGGCC		18	2	0.11	19	0	0		0	1	4	2	0.5				T	18779747	G	T	18779747	3	4	18	1	0	0	0	0	1	0	0	0	8423	1116	39	1	1550	1	KLHL26	19	18779747	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	941385	18779747	40349236	71	1149											
ALDH16A1	126133	mdanderson.org	37	chr19	49971739	49971739	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcttgccttcgtgtccctGctggctcccgccctggccta	10	18	0	0	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_153329	exon15	c.G2040T	p.L680L	GTCCCTGCTGGCT		18	2	0.11	13	0	0				141	0	0				T	49971739	G	T	49971739	2	4	18	1	0	0	0	0	0	0	0	1	485	1306	46	2		2	ALDH16A1	19	49971739	Silent	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	31191992	49971739	9157244	72	1150											
FCGRT	2217	mdanderson.org	37	chr19	50028780	50028780	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcttgctactcacggcagCggctgtaggaggagctctgt	14	10	3	0	rs200666118	bycluster;by1000genomes	TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	FCGRT,NS,carcinoma,0,1	FCGRT	NM_004107	exon5	c.C938T	p.A313V	CGGCAGCGGCTGT		40	3	0.08	42	0	0	0	0	1	308	0	0				T	50028780	C	T	50028780	3	4	18	1	0	0	0	0	1	0	0	0	5818	768	27	1	956	1	FCGRT	19	50028780	Missense_Mutation	SNP	C	TCGA-2G-AAG0-01A-11D-A42Y-10	57041	50028780	9100203	73	1151											
MYH14	79784	mdanderson.org	37	chr19	50781397	50781397	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggccgaggtgtccgagctgCgggcagaactgagcagcctg	17	11	0	2	rs372367091		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001145809	exon30	c.C3883T	p.R1295W	GAGCTGCGGGCAG		35	3	0.09	32	0	0				10	0	0				T	50781397	C	T	50781397	3	4	18	1	0	0	0	0	1	0	0	0	10080	759	27	1	3997	1	MYH14	19	50781397	Missense_Mutation	SNP	C	TCGA-2G-AAG0-01A-11D-A42Y-10	752617	50781397	8347586	74	1152											
KLK7	5650	mdanderson.org	37	chr19	51485168	51485168	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaataatcttgtcaccctGggctggatggagacatggag	12	8	3	1	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	KLK7,colon,carcinoma,+2,1	KLK7	NM_139277	exon3	c.C76A	p.Q26K	CACCCTGGGCTGG		48	3	0.06	58	1	0.0172413793		2	1	0	0					T	51485168	G	T	51485168	3	4	18	1	0	0	0	0	1	0	0	0	8451	1357	47	3	701	3	KLK7	19	51485168	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	703771	51485168	7643815	75	1153											
ZNF497	162968	mdanderson.org	37	chr19	58867669	58867669	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggccttgctgcagtgggCgcagacgaacggcctctcgc	15	13	1	1	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_198458	exon3	c.G1333T	p.A445S	AGTGGGCGCAGAC		30	3	0.1	28	0	0				2	0	0				A	58867669	C	A	58867669	3	1	18	1	0	0	0	0	1	0	0	0	18002	768	27	1	167	1	ZNF497	19	58867669	Missense_Mutation	SNP	C	TCGA-2G-AAG0-01A-11D-A42Y-10	7382501	58867669	261314	76	1154											
VSX1	30813	mdanderson.org	37	chr20	25060101	25060101	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcttcttcctcttgcccaaGgtgggggatgcctttaggtc	12	12	2	0	rs199995626	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001256271	exon2	c.C474A	p.T158T	GCCCAAGGTGGGG		52	3	0.06	60	0	0				0	0					T	25060101	G	T	25060101	2	4	18	1	0	0	0	0	0	0	0	1	17290	987	35	3		3	VSX1	20	25060101	Silent	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10		25060101	37965419	77	1155											
ZNF831	128611	mdanderson.org	37	chr20	57767767	57767767	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgggccctggtcagacagGccgcggtggaggacctgcca	16	15	1	1	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_178457	exon1	c.G1693T	p.A565S	AGACAGGCCGCGG		21	2	0.1	22	0	0				0	0					T	57767767	G	T	57767767	3	4	18	1	0	0	0	0	1	0	0	0	18231	1203	42	2	1695	2	ZNF831	20	57767767	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10	32707666	57767767	5257753	78	1156											
ADAMTS5	11096	mdanderson.org	37	chr21	28338584	28338584	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccccctgccgccggcgggGctgggcggctgctgcagcag	17	17	0	0	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_007038	exon1	c.C127A	p.P43T	GGCGGGGCTGGGC		17	2	0.12	23	0	0				0	0					T	28338584	G	T	28338584	3	4	18	1	0	0	0	0	1	0	0	0	268	1203	42	2	2697	2	ADAMTS5	21	28338584	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10		28338584	19791311	79	1157											
DEPDC5	9681	broad.mit.edu	37	chr22	32302245	32302245	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caagttctcagggcagcagcGgcggcggcggaactccacca	14	14	1	0	rs370366925		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	DEPDC5_ENST00000535622,NS,carcinoma,0,1	DEPDC5	NM_001242896	exon43	c.G4574A	p.R1525Q	AGCAGCGGCGGCG		193	5	0.03	178	0	0		266	1	38	2	0.05	rescued with RNA-seq			A	32302245	G	A	32302245	3	1	18	1	0	0	0	0	1	0	0	0	4470	1116	39	1	4731	1	DEPDC5	22	32302245	Missense_Mutation	SNP	G	TCGA-2G-AAG0-01A-11D-A42Y-10		32302245	19002321	80	1158											
ALDH4A1	8659	hgsc.bcm.edu;mdanderson.org	37	chr1	19209815	19209815	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttggtgctcgggggcacGctgatgggctgctgcccctc	16	13	0	1	rs199723895	by1000genomes;alternate_allele	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_003748	exon6	c.C561A	p.S187R	GGGCACGCTGATG		54	4	0.07	68	0	0				31	0	0				T	19209815	G	T	19209815	3	4	19	1	0	0	0	0	1	0	0	0	498	1078	38	1	1170	1	ALDH4A1	1	19209815	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10		19209815	230040806	1	1159											
CSMD2	114784	mdanderson.org	37	chr1	34164479	34164479	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagctccctgcaaaatgacCttcatcatgaaccttgtagc	8	12	2	2	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_052896	exon24	c.G3679T	p.G1227C	AATGACCTTCATC		50	3	0.06	45	0	0				0	0					A	34164479	C	A	34164479	3	1	19	1	0	0	0	0	1	0	0	0	3970	681	24	3	6968	3	CSMD2	1	34164479	Missense_Mutation	SNP	C	TCGA-2G-AAG3-01A-11D-A42Y-10	14954664	34164479	215086142	2	1160											
OBSCN	84033	hgsc.bcm.edu	37	chr1	228465295	228465295	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cctgtgaggtctcccacgacGaagtgcctggccagtggttc	13	13	1	1	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001271223	exon29	c.G7969T	p.E2657X	CACGACGAAGTGC		76	23	0.3	72	0	0				8	0	0				T	228465295	G	T	228465295	4	4	19	1	0	0	0	0	0	1	0	0	10859	1073	37	1		1	OBSCN	1	228465295	Nonsense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	194300816	228465295	20785326	3	1161											
ATL2	64225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr2	38527452	38527452	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	atgtggaagttcttctccttGatagattttgatgtaagcct	9	6	2	3	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001135673	exon10	c.C1090T	p.Q364X	CTCCTTGATAGAT		24	6	0.25	25	0	0				46	6	0.13				A	38527452	G	A	38527452	4	1	19	1	0	0	0	0	0	1	0	0	1106	1299	45	3	789	3	ATL2	2	38527452	Nonsense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10		38527452	204671921	4	1162											
TMEM182	130827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	103380804	103380804	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctagccaatcagccaccgtcCaagaactgcacacatgctta	6	15	1	1	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_144632	exon3	c.C249G	p.S83S	ACCGTCCAAGAAC		88	30	0.34	100	0	0				20	6	0.3				G	103380804	C	G	103380804	2	3	19	1	0	0	0	0	0	0	0	1	16160	581	21	5		5	TMEM182	2	103380804	Silent	SNP	C	TCGA-2G-AAG3-01A-11D-A42Y-10	64853352	103380804	139818569	5	1163											
KCNE4	23704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	223918008	223918008	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaggagacctcggagacgCccctcaacgagagcagcgaa	14	12	1	3	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_080671	exon2	c.C613T	p.P205S	GAGACGCCCCTCA		129	34	0.26	92	0	0				39	10	0.26				T	223918008	C	T	223918008	3	4	19	1	0	0	0	0	1	0	0	0	8068	739	26	2	462	2	KCNE4	2	223918008	Missense_Mutation	SNP	C	TCGA-2G-AAG3-01A-11D-A42Y-10	120537204	223918008	19281365	6	1164											
TSEN2	80746	broad.mit.edu	37	chr3	12544861	12544861	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aggattacacgaaaccgcttGagcatcctcctgtgaaaagg	10	10	0	2	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	TSEN2	NM_001145394	exon5	c.G409T	p.E137X	CCGCTTGAGCATC		106	4	0.04	127	0	0		46		32	0	0				T	12544861	G	T	12544861	4	4	19	1	0	0	0	0	0	1	0	0	16672	1291	45	3	423	3	TSEN2	3	12544861	Nonsense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10		12544861	185477569	7	1165											
CMTM6	54918	mdanderson.org	37	chr3	32544117	32544117	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	caccagctgcaagcccttgaGaacgcgccggagcaatggga	13	13	0	1	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_017801	exon1	c.C121A	p.L41I	CCTTGAGAACGCG		23	3	0.13	22	0	0				40	0	0				T	32544117	G	T	32544117	3	4	19	1	0	0	0	0	1	0	0	0	3610	942	33	3	446	3	CMTM6	3	32544117	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	19999256	32544117	165478313	8	1166											
VPS8	23355	mdanderson.org	37	chr3	184682325	184682325	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaggagatattcatggtGccttcctaataatgttagag	10	5	1	3	rs373762204	alternate_allele	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001009921	exon37	c.G3253T	p.A1085S	CATGGTGCCTTCC		52	3	0.06	48	0	0				18	0	0				T	184682325	G	T	184682325	3	4	19	1	0	0	0	0	1	0	0	0	17277	1319	46	2	3395	2	VPS8	3	184682325	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	152138208	184682325	13340105	9	1167											
DGKQ	1609	mdanderson.org	37	chr4	960807	960807	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagcgggccgtgctcttcGgggtcactcgcacggacacg	15	14	2	1	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001347	exon10	c.C1256A	p.P419Q	CTCTTCGGGGTCA		26	2	0.08	35	0	0				12	0	0				T	960807	G	T	960807	3	4	19	1	0	0	0	0	1	0	0	0	4501	1116	39	1	1628	1	DGKQ	4	960807	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10		960807	190193469	10	1168											
KIAA1109	84162	bcgsc.ca;mdanderson.org	37	chr4	123120533	123120533	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttacactcctgctattaaGggacaactcttacatgtgga	9	9	1	0	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	KIAA1109	NM_015312	exon12	c.G1308T	p.K436N	TATTAAGGGACAA		72	5	0.07	78	0	0		424		5	0	0				T	123120533	G	T	123120533	3	4	19	1	0	0	0	0	1	0	0	0	8249	991	35	3	1354	3	KIAA1109	4	123120533	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	122159726	123120533	68033743	11	1169											
ZDHHC11	79844	ucsc.edu	37	chr5	840644	840644	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aagatgagcagctggcccagGtgcaccaagccaagaaagtc	12	11	0	3	rs200038670	bycluster	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	ZDHHC11	NM_024786	exon5	c.C750G	p.H250Q	GCCCAGGTGCACC		28	6	0.21	34	1	0.0294117647		97		6	2	0.33				C	840644	G	C	840644	3	2	19	1	0	0	0	0	1	0	0	0	17658	1252	44	5	520	5	ZDHHC11	5	840644	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10		840644	180074616	12	1170											
ZDHHC11	79844	ucsc.edu	37	chr5	840704	840704	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgatgatcacgactatcagGgtctgcacctgcaccgggaa	11	13	3	1	rs139300052		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	ZDHHC11	NM_024786	exon5	c.C690T	p.T230T	TATCAGGGTCTGC		31	6	0.19	36	1	0.0277777778		97		2	2	1				A	840704	G	A	840704	2	1	19	1	0	0	0	0	0	0	0	1	17658	1219	43	3		3	ZDHHC11	5	840704	Silent	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	60	840704	180074556	13	1171											
JARID2	3720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	15374463	15374463	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatgcggaaggcattgctgGgagcctgaaaactgtgaatg	15	7	0	2	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_004973	exon2	c.G161A	p.G54E	TTGCTGGGAGCCT		102	27	0.26	91	0	0				19	7	0.37				A	15374463	G	A	15374463	3	1	19	1	0	0	0	0	1	0	0	0	7988	1232	43	3	167	3	JARID2	6	15374463	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10		15374463	155740604	14	1172											
VARS2	57176	bcgsc.ca	37	chr6	30890754	30890754	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctcccatggagttcaggGtaagcctgggcgaggggtgt	17	9	1	0	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	VARS2	NM_020442	exon23	c.2185+1G>T	.	TTCAGGGTAAGCC		150	6	0.04	92	1	0.0108695652		60		0	0					T	30890754	G	T	30890754	5	4	19	1	0	0	0	0	0	0	1	0	17183	1275	44	3	2366	3	VARS2	6	30890754	Splice_Site	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	15516291	30890754	140224313	15	1173											
RUNX2	860	mdanderson.org	37	chr6	45390498	45390498	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcaggaggcggcggcggCggctgcggcggcggcggcgg	25	12	0	0	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001024630	exon3	c.C227A	p.A76E	CGGCGGCGGCTGC		16	2	0.13	9	0	0				1	0	0				A	45390498	C	A	45390498	3	1	19	1	0	0	0	0	1	0	0	0	13799	768	27	1	249	1	RUNX2	6	45390498	Missense_Mutation	SNP	C	TCGA-2G-AAG3-01A-11D-A42Y-10	14499744	45390498	125724569	16	1174											
C6orf165	154313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	88119658	88119658	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtttctgaaactctgattgCttttatggtaagaagaaata	8	4	2	4	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001031743	exon2	c.C101G	p.A34G	TGATTGCTTTTAT		23	10	0.43	53	0	0				12	7	0.58				G	88119658	C	G	88119658	3	3	19	1	0	0	0	0	1	0	0	0	2355	797	28	5	103	5	C6orf165	6	88119658	Missense_Mutation	SNP	C	TCGA-2G-AAG3-01A-11D-A42Y-10	42729160	88119658	82995409	17	1175											
SERINC1	57515	mdanderson.org	37	chr6	122773072	122773072	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacattacagaagcaccaacGcagaggagcatgttgacact	10	10	0	3	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_020755	exon6	c.C720A	p.C240X	ACCAACGCAGAGG		50	3	0.06	44	0	0				201	0	0				T	122773072	G	T	122773072	4	4	19	1	0	0	0	0	0	1	0	0	14132	1079	38	1	661	1	SERINC1	6	122773072	Nonsense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	34653414	122773072	48341995	18	1176											
VNN1	8876	broad.mit.edu;mdanderson.org	37	chr6	133013412	133013412	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cagtccgtcaaatgcccctaGagcgtacacttcatttggta	8	12	2	1	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	VNN1	NM_004666	exon5	c.C1138A	p.L380I	CCCCTAGAGCGTA		80	5	0.06	121	0	0		69		1	0	0				T	133013412	G	T	133013412	3	4	19	1	0	0	0	0	1	0	0	0	17241	933	33	3	415	3	VNN1	6	133013412	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	10240340	133013412	38101655	19	1177											
MUC17	140453	hgsc.bcm.edu	37	chr7	100682117	100682117	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggtggtcagttctgaggctGgcaccctttccacaactcct	10	14	2	1	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	MUC17,right_upper_lobe,carcinoma,-2,1	MUC17	NM_001040105	exon3	c.G7420A	p.G2474S	GAGGCTGGCACCC		104	6	0.06	82	0	0		-2	1	0	0					A	100682117	G	A	100682117	3	1	19	1	0	0	0	0	1	0	0	0	10021	1348	47	3	7430	3	MUC17	7	100682117	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10		100682117	58456546	20	1178											
EBAG9	9166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	110569202	110569202	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaccattgaattttggcatCccagatgggagcacaggttt	11	8	0	2	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_004215	exon5	c.C360A	p.I120I	TGGCATCCCAGAT		158	37	0.23	100	0	0				111	26	0.23				A	110569202	C	A	110569202	2	1	19	1	0	0	0	0	0	0	0	1	4905	845	30	3		3	EBAG9	8	110569202	Silent	SNP	C	TCGA-2G-AAG3-01A-11D-A42Y-10		110569202	35794820	21	1179											
ZHX1	11244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	124267671	124267671	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgatagatattcccgaagaAgaaacttctgtagattctgc	8	8	2	5	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_007222	exon3	c.T516C	p.S172S	CGAAGAAGAAACT		139	30	0.22	74	0	0				21	4	0.19				G	124267671	A	G	124267671	2	3	19	1	0	0	0	0	0	0	0	1	17732	59	3	4		4	ZHX1	8	124267671	Silent	SNP	A	TCGA-2G-AAG3-01A-11D-A42Y-10	13698469	124267671	22096351	22	1180											
PPP1R16A	84988	mdanderson.org	37	chr8	145726559	145726559	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcgcaccgacctgtaccGcaagcagcacgcccaggagg	12	17	0	0	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_032902	exon9	c.G1085T	p.R362L	TGTACCGCAAGCA		35	3	0.09	13	0	0				70	0	0				T	145726559	G	T	145726559	3	4	19	1	0	0	0	0	1	0	0	0	12413	1087	38	1	1119	1	PPP1R16A	8	145726559	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	21458888	145726559	637463	23	1181											
WNT8B	7479	mdanderson.org	37	chr10	102242036	102242036	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctctccccaggcggtgaaGggcaccatgaaacgcacgtg	12	14	1	2	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_003393	exon6	c.G519T	p.K173N	GGTGAAGGGCACC		9	2	0.22	9	0	0				0	0					T	102242036	G	T	102242036	3	4	19	1	0	0	0	0	1	0	0	0	17456	991	35	3	541	3	WNT8B	10	102242036	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10		102242036	33292711	24	1182											
SORCS1	114815	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	108338921	108338921	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagtctgagggacattggGcctgctttcagagtgactga	13	8	3	4	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	SORCS1	NM_001206572	exon26	c.C3460A	p.P1154T	CATTGGGCCTGCT		110	7	0.06	95	1	0.0105263158		534		4	0	0				T	108338921	G	T	108338921	3	4	19	1	0	0	0	0	1	0	0	0	14983	1203	42	2	284	2	SORCS1	10	108338921	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	6096885	108338921	27195826	25	1183											
EMX2	2018	broad.mit.edu	37	chr10	119303017	119303017	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcggtctcgcacccgcccaAccccgccgtgccagtgcacc	11	21	1	0	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	EMX2,NS,carcinoma,0,1	EMX2	NM_001165924	exon1	c.A239C	p.N80T	CGCCCAACCCCGC		68	24	0.35	58	9	0.1551724138		25	1	11	1	0.09				C	119303017	A	C	119303017	3	2	19	1	0	0	0	0	1	0	0	0	5136	43	2	4	241	4	EMX2	10	119303017	Missense_Mutation	SNP	A	TCGA-2G-AAG3-01A-11D-A42Y-10	10964096	119303017	16231730	26	1184											
CTBP2	1488	bcgsc.ca	37	chr10	126678129	126678129	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgattgtccccgtgttttgtGggctggttgggagagggcgc	18	8	0	1	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	CTBP2	NM_022802	exon9	c.C2916A	p.P972P	TTTTGTGGGCTGG		62	4	0.06	56	0	0		100		262	0	0				T	126678129	G	T	126678129	2	4	19	1	0	0	0	0	0	0	0	1	4022	1335	47	3		3	CTBP2	10	126678129	Silent	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	7375112	126678129	8856618	27	1185											
ODF3	113746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	199447	199447	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcagtacaccatggctgccCgtgtggagcccccaggggac	14	15	0	0	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	ODF3,face,carcinoma,0,1	ODF3	NM_053280	exon6	c.C613A	p.R205S	GCTGCCCGTGTGG		88	37	0.42	89	0	0		0	1	0	0					A	199447	C	A	199447	3	1	19	1	0	0	0	0	1	0	0	0	10876	652	23	1	631	1	ODF3	11	199447	Missense_Mutation	SNP	C	TCGA-2G-AAG3-01A-11D-A42Y-10		199447	134807069	28	1186											
MUC6	4588	bcgsc.ca	37	chr11	1016871	1016871	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taggacctgtggaagagaagGgactgctccctgtaggtggg	17	7	0	1	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	MUC6	NM_005961	exon31	c.C5930A	p.P1977H	GAGAAGGGACTGC		277	12	0.04	337	4	0.0118694362		408		1	0	0				T	1016871	G	T	1016871	3	4	19	1	0	0	0	0	1	0	0	0	10027	1232	43	3	1401	3	MUC6	11	1016871	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	817424	1016871	133989645	29	1187											
MUC2	4583	mdanderson.org	37	chr11	1092966	1092966	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accactacggtgaccccaacCccaacacccaccggcacaca	5	21	0	1	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_002457	exon30	c.C4785A	p.T1595T	CCCAACCCCAACA		31	2	0.06	30	1	0.0333333333				17	1	0.06				A	1092966	C	A	1092966	2	1	19	1	0	0	0	0	0	0	0	1	10022	610	22	3		3	MUC2	11	1092966	Silent	SNP	C	TCGA-2G-AAG3-01A-11D-A42Y-10	76095	1092966	133913550	30	1188											
FOLH1	2346	bcgsc.ca	37	chr11	49204790	49204790	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaattccacgcctataagcAtattctgaaaaaaaaaattg	5	8	1	1	rs76509850	bycluster;byfrequency	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	FOLH1	NM_004476	exon7	c.T831C	p.Y277Y	ATAAGCATATTCT		113	6	0.05	136	2	0.0147058824		141		9	0	0				G	49204790	A	G	49204790	2	3	19	1	0	0	0	0	0	0	0	1	6011	224	8	4		4	FOLH1	11	49204790	Silent	SNP	A	TCGA-2G-AAG3-01A-11D-A42Y-10	48111824	49204790	85801726	31	1189											
ATG2A	23130	mdanderson.org	37	chr11	64662838	64662838	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccctgcgcagcctccgcGcagagcgcttatcctgcagg	13	17	0	1	rs370496305	alternate_allele	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_015104	exon40	c.C5504A	p.A1835E	CTCCGCGCAGAGC		34	3	0.09	53	0	0				39	0	0				T	64662838	G	T	64662838	3	4	19	1	0	0	0	0	1	0	0	0	1092	1087	38	1	320	1	ATG2A	11	64662838	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	15458048	64662838	70343678	32	1190											
ATG2A	23130	mdanderson.org	37	chr11	64677638	64677638	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agggccagttctgagtggcaAtggcaggcaactgagcgccg	16	10	1	2	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_015104	exon13	c.T1737C	p.H579H	GTGGCAATGGCAG		42	3	0.07	52	0	0				34	0	0				G	64677638	A	G	64677638	2	3	19	1	0	0	0	0	0	0	0	1	1092	98	4	4		4	ATG2A	11	64677638	Silent	SNP	A	TCGA-2G-AAG3-01A-11D-A42Y-10	14800	64677638	70328878	33	1191											
PCNXL3	399909	mdanderson.org	37	chr11	65394937	65394937	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcgctcagccttctgctgcCccccacagcagtacctgacg	9	18	2	1	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_032223	exon22	c.C3586T	p.P1196S	TGCTGCCCCCCAC		50	3	0.06	69	0	0				39	0	0				T	65394937	C	T	65394937	3	4	19	1	0	0	0	0	1	0	0	0	11639	623	22	3	3672	3	PCNXL3	11	65394937	Missense_Mutation	SNP	C	TCGA-2G-AAG3-01A-11D-A42Y-10	717299	65394937	69611579	34	1192											
YIF1A	10897	mdanderson.org	37	chr11	66052939	66052939	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtagaggcccaggagcaggGccagcacctccatcaccacc	12	16	1	1	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	YIF1A,face,carcinoma,0,1	YIF1A	NM_020470	exon6	c.C554A	p.A185D	AGCAGGGCCAGCA		54	5	0.09	44	0	0		0	1	132	0	0				T	66052939	G	T	66052939	3	4	19	1	0	0	0	0	1	0	0	0	17534	1203	42	2	339	2	YIF1A	11	66052939	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	658002	66052939	68953577	35	1193											
SHANK2	22941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	70653201	70653201	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcctcccgggcacggcactGtagagcttccgcttgggccc	13	16	0	1	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	SHANK2_ENST00000338508,colon,carcinoma,-1,1	SHANK2_ENST00000338508	.	.	.	.	GGCACTGTAGAGC		77	7	0.09	88	0	0		-1	1	4	1	0.25				A	70653201	G	A	70653201	2	1	19	1	0	0	0	0	0	0	0	1	14319	1372	48	3		3	SHANK2	11	70653201	Silent	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	4600262	70653201	64353315	36	1194											
PRB2	653247	broad.mit.edu	37	chr12	11546214	11546214	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttgcctccttgtgggggTggtccttgtggctttcctgg	15	9	0	0	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	PRB2	NM_006248	exon3	c.A798C	p.P266P	TGGGGGTGGTCCT		596	41	0.07	240	16	0.0666666667		168		0	0					G	11546214	T	G	11546214	2	3	19	1	0	0	0	0	0	0	0	1	12494	1683	59	4		4	PRB2	12	11546214	Silent	SNP	T	TCGA-2G-AAG3-01A-11D-A42Y-10		11546214	122305681	37	1195											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	25380276	25380276	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcattgcactgtactcctctTgacctgctgtgtcgagaata	8	11	2	2	rs121913240	bycluster	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	KRAS_ENST00000256078,colon,carcinoma,+1,429	KRAS_ENST00000256078	NM_004985	exon3	c.A182G	p.Q61R	TCCTCTTGACCTG		193	14	0.07	87	0	0		1	429	125	3	0.02				C	25380276	T	C	25380276	3	2	19	1	0	0	0	0	1	0	0	0	8480	1812	63	4	520	4	KRAS	12	25380276	Missense_Mutation	SNP	T	TCGA-2G-AAG3-01A-11D-A42Y-10	13834062	25380276	108471619	38	1196											
RAPGEF3	10411	mdanderson.org	37	chr12	48141588	48141588	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcaagatctgctgcctcttGttgcagacgtaggtgctgcg	13	11	2	2	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001098531	exon14	c.C1380A	p.N460K	CCTCTTGTTGCAG		25	2	0.08	33	0	0				13	0	0				T	48141588	G	T	48141588	3	4	19	1	0	0	0	0	1	0	0	0	13096	1368	48	3	1451	3	RAPGEF3	12	48141588	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	22761312	48141588	85710307	39	1197											
EIF4B	1975	mdanderson.org	37	chr12	53416289	53416289	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atctgtagacagggatgatcGttcttttggccgtgatagaa	12	6	2	4	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	EIF4B,NS,carcinoma,0,1	EIF4B	NM_001417	exon6	c.G545A	p.R182H	ATGATCGTTCTTT		79	4	0.05	77	0	0		0	1	576	0	0				A	53416289	G	A	53416289	3	1	19	1	0	0	0	0	1	0	0	0	5055	1145	40	1	567	1	EIF4B	12	53416289	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	5274701	53416289	80435606	40	1198											
MMP19	4327	mdanderson.org	37	chr12	56232401	56232401	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcctcacccagcatcatgGcatccagttcactactgcaa	8	15	3	0	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_002429	exon6	c.C884A	p.A295D	ATCATGGCATCCA		45	3	0.07	46	0	0				19	0	0				T	56232401	G	T	56232401	3	4	19	1	0	0	0	0	1	0	0	0	9704	1203	42	2	658	2	MMP19	12	56232401	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	2816112	56232401	77619494	41	1199											
AVIL	10677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	58204191	58204191	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	atctcatcagggactgtaggCttgataatggagcgtcggcc	13	9	2	1	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_006576	exon6	c.G702C	p.K234N	TGTAGGCTTGATA		154	51	0.33	138	0	0				2	1	0.5				G	58204191	C	G	58204191	3	3	19	1	0	0	0	0	1	0	0	0	1225	796	28	5	1813	5	AVIL	12	58204191	Missense_Mutation	SNP	C	TCGA-2G-AAG3-01A-11D-A42Y-10	1971790	58204191	75647704	42	1200											
VPS33A	65082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	122734429	122734429	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtacttactgttctgaatgCcataaatttcatcaatgagt	6	7	3	2	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_022916	exon6	c.G764A	p.G255D	TGAATGCCATAAA		80	28	0.35	75	0	0				49	4	0.08				T	122734429	C	T	122734429	3	4	19	1	0	0	0	0	1	0	0	0	17260	739	26	2	1058	2	VPS33A	12	122734429	Missense_Mutation	SNP	C	TCGA-2G-AAG3-01A-11D-A42Y-10	64530238	122734429	11117466	43	1201											
RILPL1	353116	mdanderson.org	37	chr12	123968738	123968738	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcacttacagtcgcttgatGcccgactccggctgggggga	13	12	1	1	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_178314	exon6	c.C1056A	p.G352G	CTTGATGCCCGAC		22	2	0.09	14	0	0				42	0	0				T	123968738	G	T	123968738	2	4	19	1	0	0	0	0	0	0	0	1	13410	1306	46	2		2	RILPL1	12	123968738	Silent	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	1234309	123968738	9883157	44	1202											
SCARB1	949	mdanderson.org	37	chr12	125263108	125263108	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcccagcggccaggcctgGctggctcacggtgtcctcag	15	15	2	0	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001082959	exon12	c.C1426A	p.P476T	GGCCTGGCTGGCT		46	3	0.07	38	0	0				53	0	0				T	125263108	G	T	125263108	3	4	19	1	0	0	0	0	1	0	0	0	13933	1203	42	2	98	2	SCARB1	12	125263108	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	1294370	125263108	8588787	45	1203											
ADPRHL1	113622	mdanderson.org	37	chr13	114088091	114088091	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtcatccggccgcactcCacgctgacctcgatgagggt	13	14	1	2	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	ADPRHL1,caecum,carcinoma,-2,1	ADPRHL1	NM_138430	exon3	c.G471T	p.V157V	GCACTCCACGCTG		40	3	0.08	58	0	0		-2	1	3	0	0				A	114088091	C	A	114088091	2	1	19	1	0	0	0	0	0	0	0	1	331	581	21	3		3	ADPRHL1	13	114088091	Silent	SNP	C	TCGA-2G-AAG3-01A-11D-A42Y-10		114088091	1081787	46	1204											
BCL11B	64919	mdanderson.org	37	chr14	99641120	99641120	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccaccttgatgcgcttggCggcgctgttgagcccggggc	15	14	0	2	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	BCL11B,NS,carcinoma,0,1	BCL11B	NM_138576	exon4	c.G2053A	p.A685T	GCTTGGCGGCGCT		30	3	0.1	13	0	0		0	1	1	0	0				T	99641120	C	T	99641120	3	4	19	1	0	0	0	0	1	0	0	0	1362	768	27	1	635	1	BCL11B	14	99641120	Missense_Mutation	SNP	C	TCGA-2G-AAG3-01A-11D-A42Y-10		99641120	7708420	47	1205											
PACS2	23241	mdanderson.org	37	chr14	105858990	105858990	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgagctgatggggctgcagGtggactactggacggcagca	17	10	0	1	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001100913	exon23	c.G2290T	p.V764L	CTGCAGGTGGACT		53	3	0.06	31	0	0				71	0	0				T	105858990	G	T	105858990	3	4	19	1	0	0	0	0	1	0	0	0	11419	1261	44	3	2343	3	PACS2	14	105858990	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	6217870	105858990	1490550	48	1206											
RAD51	5888	mdanderson.org	37	chr15	41021794	41021794	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccaggcagatgcacttgGccaggtttctgcggatgctt	13	11	1	1	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001164269	exon8	c.G739T	p.A247S	CACTTGGCCAGGT		67	4	0.06	71	0	0				186	0	0				T	41021794	G	T	41021794	3	4	19	1	0	0	0	0	1	0	0	0	13036	1203	42	2	887	2	RAD51	15	41021794	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10		41021794	61509598	49	1207											
RPAP1	26015	mdanderson.org	37	chr15	41817286	41817286	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctctgggggcaaggccaGttcttggggagcctcagcta	14	11	3	0	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	RPAP1,NS,carcinoma,+2,1	RPAP1	NM_015540	exon15	c.C1978A	p.L660M	AGGCCAGTTCTTG		50	3	0.06	56	1	0.0178571429		2	1	47	0	0				T	41817286	G	T	41817286	3	4	19	1	0	0	0	0	1	0	0	0	13592	1020	36	3	2247	3	RPAP1	15	41817286	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	795492	41817286	60714106	50	1208											
CSPG4	1464	mdanderson.org	37	chr15	75979730	75979730	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagggcaatggtcacttgtaGggtggcatccgtgtgcactg	15	8	1	0	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001897	exon3	c.C3676A	p.L1226I	CTTGTAGGGTGGC		52	3	0.06	59	0	0				44	0	0				T	75979730	G	T	75979730	3	4	19	1	0	0	0	0	1	0	0	0	3985	991	35	3	3324	3	CSPG4	15	75979730	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	34162444	75979730	26551662	51	1209											
ACSM2B	348158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	20556521	20556521	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ataggcctgatgggtttgacCctgatgccaatgtctccttc	10	11	1	3	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_182617	exon11	c.G1239T	p.R413S	TTTGACCCTGATG		63	20	0.32	94	0	0				0	0					A	20556521	C	A	20556521	3	1	19	1	0	0	0	0	1	0	0	0	184	622	22	3	514	3	ACSM2B	16	20556521	Missense_Mutation	SNP	C	TCGA-2G-AAG3-01A-11D-A42Y-10		20556521	69798232	52	1210											
MYBBP1A	10514	mdanderson.org	37	chr17	4445103	4445103	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgacctttgctaggacctgGcccatcagctgcttccactc	9	15	1	1	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	MYBBP1A,bladder,carcinoma,-2,1	MYBBP1A	NM_014520	exon23	c.C3171A	p.G1057G	GACCTGGCCCATC		52	3	0.06	53	0	0		-2	1	109	0	0				T	4445103	G	T	4445103	2	4	19	1	0	0	0	0	0	0	0	1	10055	1190	42	2		2	MYBBP1A	17	4445103	Silent	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10		4445103	76750107	53	1211											
PELP1	27043	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	4574813	4574813	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcggccagcatggcagctGtgtcatcctgctccttttag	11	12	1	0	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	PELP1	NM_014389	exon17	c.C3314A	p.T1105K	GCAGCTGTGTCAT		44	4	0.09	46	0	0		102		176	0	0				T	4574813	G	T	4574813	3	4	19	1	0	0	0	0	1	0	0	0	11771	1377	48	3	82	3	PELP1	17	4574813	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	129710	4574813	76620397	54	1212											
DNAH9	1770	mdanderson.org	37	chr17	11833287	11833287	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcttcatgagtgcagagccAgcaccctcccctgagggcca	11	15	2	3	rs2286303	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001372	exon63	c.A11982T	p.P3994P	AGAGCCAGCACCC		104	4	0.04	120	0	0				3	0	0				T	11833287	A	T	11833287	2	4	19	1	0	0	0	0	0	0	0	1	4635	175	7	5		5	DNAH9	17	11833287	Silent	SNP	A	TCGA-2G-AAG3-01A-11D-A42Y-10	7258474	11833287	69361923	55	1213											
KIAA0100	9703	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	26964994	26964994	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacccatcagggataagataCgagacagacattgggcacag	12	9	1	3	rs200349785		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	KIAA0100	NM_014680	exon14	c.G1631A	p.R544H	AAGATACGAGACA		41	4	0.1	50	0	0		175		83	0	0				T	26964994	C	T	26964994	3	4	19	1	0	0	0	0	1	0	0	0	8195	536	19	1	5180	1	KIAA0100	17	26964994	Missense_Mutation	SNP	C	TCGA-2G-AAG3-01A-11D-A42Y-10	15131707	26964994	54230216	56	1214											
ANKFN1	162282	mdanderson.org	37	chr17	54450048	54450048	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgcacctcaacacactgGtccaggaagcccaggagagg	11	13	1	1	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_153228	exon6	c.G652T	p.V218F	ACACTGGTCCAGG		41	3	0.07	38	0	0				0	0					T	54450048	G	T	54450048	3	4	19	1	0	0	0	0	1	0	0	0	621	1261	44	3	674	3	ANKFN1	17	54450048	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	27485054	54450048	26745162	57	1215											
ERN1	2081	mdanderson.org	37	chr17	62133223	62133223	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	caggtgggtggaagggcagcTgctgctgctgctgctgcagg	19	9	0	0	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001433	exon13	c.A1484T	p.Q495L	GGCAGCTGCTGCT		44	4	0.09	35	1	0.0285714286				11	0	0				A	62133223	T	A	62133223	3	1	19	1	0	0	0	0	1	0	0	0	5265	1580	55	5	1489	5	ERN1	17	62133223	Missense_Mutation	SNP	T	TCGA-2G-AAG3-01A-11D-A42Y-10	7683175	62133223	19061987	58	1216											
CEP76	79959	mdanderson.org	37	chr18	12702538	12702538	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcggaggctttctccggagGcagcgacatgctggcagccg	15	13	1	0	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001271989	exon1	c.C10A	p.P4T	CCGGAGGCAGCGA		41	3	0.07	43	0	0				17	0	0				T	12702538	G	T	12702538	3	4	19	1	0	0	0	0	1	0	0	0	3283	1203	42	2	2017	2	CEP76	18	12702538	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10		12702538	65374710	59	1217											
ILF3	3609	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	10798137	10798137	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgacaactacaactcaccGgtgcccccaaaacacgctgg	9	15	1	1	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_017620	exon18	c.G2187A	p.P729P	CTCACCGGTGCCC		114	14	0.12	117	0	0				315	67	0.21				A	10798137	G	A	10798137	2	1	19	1	0	0	0	0	0	0	0	1	7755	1103	39	1		1	ILF3	19	10798137	Silent	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10		10798137	48330846	60	1218											
RGL3	57139	mdanderson.org	37	chr19	11512712	11512712	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctcggtgagctggttctGggcatgcagggcagccagga	16	11	1	1	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_001035223	exon13	c.C1459A	p.Q487K	GGTTCTGGGCATG		45	3	0.07	52	0	0				8	0	0				T	11512712	G	T	11512712	3	4	19	1	0	0	0	0	1	0	0	0	13329	1357	47	3	719	3	RGL3	19	11512712	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	714575	11512712	47616271	61	1219											
FAM98C	147965	mdanderson.org	37	chr19	38893809	38893809	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcatggaggcggtgaagGcggaagcgtgggagggggcc	21	7	1	1	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_174905	exon1	c.G16T	p.A6S	GTGAAGGCGGAAG		12	3	0.25	9	0	0				7	0	0				T	38893809	G	T	38893809	3	4	19	1	0	0	0	0	1	0	0	0	5690	1203	42	2	18	2	FAM98C	19	38893809	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	27381097	38893809	20235174	62	1220											
IL4I1	259307	mdanderson.org	37	chr19	50393222	50393222	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgcggccataagggaccGtccagtcatccttttcggtt	11	11	1	1	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_172374	exon10	c.C1475T	p.T492M	GGGACCGTCCAGT		51	3	0.06	50	0	0				76	0	0				A	50393222	G	A	50393222	3	1	19	1	0	0	0	0	1	0	0	0	7740	1145	40	1	298	1	IL4I1	19	50393222	Missense_Mutation	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10	11499413	50393222	8735761	63	1221											
INSM1	3642	broad.mit.edu	37	chr20	20350192	20350192	+	Frame_Shift_Del	DEL	G	G	-													gaggcggccggcgacggcgaGggggccggcgtgctgggcct					novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	INSM1	NM_002196	exon1	c.1281delG	p.E427fs	CGGCGAGGGGGCC		6	2	0.33	6	0	0		17		0	0					-	20350192	G	-	20350192	7	5	19	1	0	1	0	1	0	0	0	0	7814	991	35	0	1283	0	INSM1	20	20350192	Frame_Shift_Del	DEL	G	TCGA-2G-AAG3-01A-11D-A42Y-10		20350192	42675328	64	1222											
CARD10	29775	mdanderson.org	37	chr22	37912202	37912202	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcgagcacccggccccgGgcctgcagttgctgctcccg	12	19	0	0	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_014550	exon3	c.C477A	p.A159A	GCCCCGGGCCTGC		42	3	0.07	41	0	0				31	0	0				T	37912202	G	T	37912202	2	4	19	1	0	0	0	0	0	0	0	1	2662	1219	43	3		3	CARD10	22	37912202	Silent	SNP	G	TCGA-2G-AAG3-01A-11D-A42Y-10		37912202	13392364	65	1223											
ARMCX5	64860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	101857554	101857554	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gaccagcattgggatgaaatCcagtgatgaggatgaagaaa	13	5	0	5	novel		TCGA-2G-AAG3-01A-11D-A42Y-10	TCGA-2G-AAG3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	edec0ae4-0d21-40ef-87fb-9bf99b9d20d3	aee66dc1-135a-44d7-8f3d-b4e02426e898	.	.	NM_022838	exon3	c.C485A	p.S162Y	TGAAATCCAGTGA		153	80	0.52	84	0	0				45	20	0.44				A	101857554	C	A	101857554	3	1	19	1	0	0	0	0	1	0	0	0	961	855	30	3	487	3	ARMCX5	23	101857554	Missense_Mutation	SNP	C	TCGA-2G-AAG3-01A-11D-A42Y-10		101857554	53413006	66	1224											
MAD2L2	10459	mdanderson.org	37	chr1	11740450	11740450	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttgcgtttctggaagatgCccacggggtagacctcgcgc	13	12	2	2	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_006341	exon3	c.G119A	p.G40D	AAGATGCCCACGG		46	3	0.07	69	0	0				78	0	0				T	11740450	C	T	11740450	3	4	20	1	0	0	0	0	1	0	0	0	9195	739	26	2	544	2	MAD2L2	1	11740450	Missense_Mutation	SNP	C	TCGA-2G-AAG5-01A-11D-A42Y-10		11740450	237510171	1	1225											
FUCA1	2517	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	24194762	24194762	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	cccgccggccgcgacctcatCcccggagcccgcatcgctac	10	22	1	0	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_000147	exon1	c.G15C	p.G5G	CCTCATCCCCGGA		42	8	0.19	33	0	0				14	2	0.14				G	24194762	C	G	24194762	2	3	20	1	0	0	0	0	0	0	0	1	6128	842	30	5		5	FUCA1	1	24194762	Silent	SNP	C	TCGA-2G-AAG5-01A-11D-A42Y-10	12454312	24194762	225055859	2	1226											
AHDC1	27245	broad.mit.edu;mdanderson.org	37	chr1	27877165	27877165	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgtatgtggtcttgttccGccgccccagcgatacgggga	13	11	1	0	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	AHDC1	NM_001029882	exon6	c.C1462T	p.R488W	TGTTCCGCCGCCC		54	4	0.07	85	0	0		98		40	0	0				A	27877165	G	A	27877165	3	1	20	1	0	0	0	0	1	0	0	0	409	1086	38	1	3353	1	AHDC1	1	27877165	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	3682403	27877165	221373456	3	1227											
CDC14A	8556	mdanderson.org	37	chr1	100856378	100856378	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catttttgataggtgcctatGcagtaagtaccttcttcatg	8	8	2	1	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_033313	exon4	c.G307T	p.A103S	GCCTATGCAGTAA		50	3	0.06	63	0	0				9	0	0				T	100856378	G	T	100856378	3	4	20	1	0	0	0	0	1	0	0	0	3078	1319	46	2	321	2	CDC14A	1	100856378	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	72979213	100856378	148394243	4	1228											
VAV3	10451	mdanderson.org	37	chr1	108145093	108145093	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaatcttgatgtgctttgCttcattattgtacctgtggg	9	6	2	1	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_006113	exon24	c.G2146A	p.A716T	GCTTTGCTTCATT		40	3	0.08	47	0	0				32	0	0				T	108145093	C	T	108145093	3	4	20	1	0	0	0	0	1	0	0	0	17192	797	28	2	413	2	VAV3	1	108145093	Missense_Mutation	SNP	C	TCGA-2G-AAG5-01A-11D-A42Y-10	7288715	108145093	141105528	5	1229											
ZNF697	90874	broad.mit.edu;mdanderson.org	37	chr1	120165430	120165430	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttgcccgtgtggatgcgGcggtggcggatcaggtggga	20	7	1	0	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	ZNF697_ENST00000421812,right_upper_lobe,carcinoma,-1,2	ZNF697	NM_001080470	exon3	c.C1536A	p.R512R	GATGCGGCGGTGG		49	3	0.06	57	0	0		26	2	17	0	0				T	120165430	G	T	120165430	2	4	20	1	0	0	0	0	0	0	0	1	18155	1190	42	2		2	ZNF697	1	120165430	Silent	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	12020337	120165430	129085191	6	1230											
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	150526211	150526211	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagaaccaggcctgccccCctacggcatcaccccagagc	8	21	1	2	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_019032	exon6	c.C744A	p.P248P	TGCCCCCCTACGG		79	35	0.44	74	0	0				120	65	0.54				A	150526211	C	A	150526211	2	1	20	1	0	0	0	0	0	0	0	1	276	610	22	3		3	ADAMTSL4	1	150526211	Silent	SNP	C	TCGA-2G-AAG5-01A-11D-A42Y-10	30360781	150526211	98724410	7	1231											
RYR2	6262	broad.mit.edu	37	chr1	237586494	237586494	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaaaaaccttctactcatGgacaaagagaaagctgatgt	8	8	2	2	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	RYR2,NS,other,+1,1	RYR2	NM_001035	exon12	c.G951T	p.M317I	ACTCATGGACAAA		340	5	0.01	410	0	0		1273	1	0	0					T	237586494	G	T	237586494	3	4	20	1	0	0	0	0	1	0	0	0	13820	1348	47	3	997	3	RYR2	1	237586494	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	87060283	237586494	11664127	8	1232											
NBAS	51594	broad.mit.edu	37	chr2	15378674	15378674	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atttctccagatgattcaaaGtatctgcataggtaacttta	6	7	3	2	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	NBAS	NM_015909	exon45	c.C5861A	p.T1954N	TTCAAAGTATCTG		148	4	0.03	190	0	0		246		120	0	0				T	15378674	G	T	15378674	3	4	20	1	0	0	0	0	1	0	0	0	10233	1029	36	3	1286	3	NBAS	2	15378674	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10		15378674	227820699	9	1233											
AAK1	22848	ucsc.edu;bcgsc.ca	37	chr2	69746110	69746110	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgagtctgggcctgctgctgCtggtaaaacgtgcctgccgg	15	11	1	1	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	AAK1	NM_014911	exon12	c.G1473C	p.Q491H	CTGCTGCTGGTAA		38	4	0.11	61	0	0		121		8	0	0				G	69746110	C	G	69746110	3	3	20	1	0	0	0	0	1	0	0	0	16	796	28	5	1456	5	AAK1	2	69746110	Missense_Mutation	SNP	C	TCGA-2G-AAG5-01A-11D-A42Y-10	54367436	69746110	173453263	10	1234											
STRADB	55437	hgsc.bcm.edu;bcgsc.ca	37	chr2	202344880	202344880	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gattttcctgatgaaaaagaCtcatactgggaattctaggg	10	6	2	3	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_018571	exon12	c.C1239T	p.D413D	AAAAGACTCATAC		120	8	0.07	130	0	0				45	0	0				T	202344880	C	T	202344880	2	4	20	1	0	0	0	0	0	0	0	1	15380	564	20	3		3	STRADB	2	202344880	Silent	SNP	C	TCGA-2G-AAG5-01A-11D-A42Y-10	132598770	202344880	40854493	11	1235											
NGEF	25791	mdanderson.org	37	chr2	233746912	233746912	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttacccagcagccgggatgtGaacgaaacaaacttggtcct	10	11	0	1	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_019850	exon13	c.C1821A	p.F607L	GGATGTGAACGAA		39	3	0.08	55	0	0				33	0	0				T	233746912	G	T	233746912	3	4	20	1	0	0	0	0	1	0	0	0	10440	1281	45	3	323	3	NGEF	2	233746912	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	31402032	233746912	9452461	12	1236											
ESPNL	339768	mdanderson.org	37	chr2	239039508	239039508	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcgactctggcatcagctGcgaggaggtgccatcagagg	15	11	3	1	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_194312	exon9	c.G2153T	p.C718F	TCAGCTGCGAGGA		23	2	0.09	21	0	0				2	0	0				T	239039508	G	T	239039508	3	4	20	1	0	0	0	0	1	0	0	0	5283	1319	46	2	2187	2	ESPNL	2	239039508	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	5292596	239039508	4159865	13	1237											
CCR3	1232	hgsc.bcm.edu	37	chr3	46307688	46307688	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctctgtctctccatccacaGcagagccggaactctctatt	7	15	3	1	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	CCR3,NS,carcinoma,-2,1	CCR3	NM_178328	exon3	c.G1102A	p.A368T	TCCACAGCAGAGC		64	3	0.05	68	0	0		-2	1	1	0	0				A	46307688	G	A	46307688	3	1	20	1	0	0	0	0	1	0	0	0	2964	971	34	2	1108	2	CCR3	3	46307688	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10		46307688	151714742	14	1238											
VPRBP	9730	broad.mit.edu	37	chr3	51458228	51458228	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagcaccttgatgccgttGttggactgaaccacattcca	10	11	0	2	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	VPRBP	NM_014703	exon14	c.C2037A	p.N679K	GCCGTTGTTGGAC		125	4	0.03	150	1	0.0066666667		107		15	0	0				T	51458228	G	T	51458228	3	4	20	1	0	0	0	0	1	0	0	0	17244	1368	48	3	2371	3	VPRBP	3	51458228	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	5150540	51458228	146564202	15	1239											
USP13	8975	hgsc.bcm.edu;bcgsc.ca	37	chr3	179472611	179472611	+	Frame_Shift_Del	DEL	C	C	-													gaagaacttccagacatcagCccccccatagtcattcctga					novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	USP13	NM_003940	exon15	c.1889delG	p.S630fs	CATCAGCCCCCCC		110	31	0.28	110	0	0		117		4	0	0				-	179472611	C	-	179472611	7	5	20	1	0	1	0	1	0	0	0	0	17103	738	26	0	1948	0	USP13	3	179472611	Frame_Shift_Del	DEL	C	TCGA-2G-AAG5-01A-11D-A42Y-10	128014383	179472611	18549819	16	1240											
ANTXR2	118429	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	80940116	80940116	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcctccattaaagctcactGaaacatcaagagttctgaaa	5	10	3	3	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	ANTXR2	NM_001145794	exon11	c.C881T	p.S294L	CTCACTGAAACAT		223	79	0.35	272	1	0.0036764706		97		136	66	0.49				A	80940116	G	A	80940116	3	1	20	1	0	0	0	0	1	0	0	0	706	1294	45	3	655	3	ANTXR2	4	80940116	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10		80940116	110214160	17	1241											
MATR3	9782	broad.mit.edu	37	chr5	138651822	138651822	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaccaggaattctgggaccTccacctccctcatttcatct	6	16	4	0	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	MATR3	NM_018834	exon5	c.T1074C	p.P358P	GGGACCTCCACCT		132	3	0.02	191	0	0		85		453	1	0				C	138651822	T	C	138651822	2	2	20	1	0	0	0	0	0	0	0	1	9386	1538	54	4		4	MATR3	5	138651822	Silent	SNP	T	TCGA-2G-AAG5-01A-11D-A42Y-10		138651822	42263438	18	1242											
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	139820640	139820640	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ataaaggagacataactcccCtgatggcagcttccagtgga	10	10	0	2	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_024668	exon5	c.C826G	p.L276V	ACTCCCCTGATGG		64	7	0.11	106	0	0				16	2	0.13				G	139820640	C	G	139820640	3	3	20	1	0	0	0	0	1	0	0	0	624	680	24	5	844	5	ANKHD1	5	139820640	Missense_Mutation	SNP	C	TCGA-2G-AAG5-01A-11D-A42Y-10	1168818	139820640	41094620	19	1243											
APBB3	10307	broad.mit.edu	37	chr5	139938282	139938282	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccctcctttgagcagggggAggggcaggggacctcctggg	18	12	0	1	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	APBB3	NM_006051	exon12	c.T1370C	p.L457P	AGGGGGAGGGGCA		236	7	0.03	266	2	0.007518797		34		14	0	0				G	139938282	A	G	139938282	3	3	20	1	0	0	0	0	1	0	0	0	758	304	11	4	115	4	APBB3	5	139938282	Missense_Mutation	SNP	A	TCGA-2G-AAG5-01A-11D-A42Y-10	117642	139938282	40976978	20	1244											
BTN3A1	0	broad.mit.edu	37	chr6	26411341	26411341	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttttttcattgtagggggAgagagacattcagcctataa	10	6	2	2	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	BTN3A1	NM_007048	exon8	c.A969G	p.G323G	AGGGGGAGAGAGA		96	3	0.03	96	1	0.0104166667		80		12	0	0				G	26411341	A	G	26411341	2	3	20	1	0	0	0	0	0	0	0	1	1565	291	11	4		4	BTN3A1	6	26411341	Silent	SNP	A	TCGA-2G-AAG5-01A-11D-A42Y-10		26411341	144703726	21	1245											
CYP21A2	1589	broad.mit.edu	37	chr6	32008457	32008457	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccttcagcatctccggctaCgacatccctgagggcacagt	9	16	2	1	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	CYP21A2	.	.	.	.	CGGCTACGACATC		282	72	0.26	325	0	0		42		2	1	0.5				T	32008457	C	T	32008457	2	4	20	1	0	0	0	0	0	0	0	1	4176	547	19	1		1	CYP21A2	6	32008457	Silent	SNP	C	TCGA-2G-AAG5-01A-11D-A42Y-10	5597116	32008457	139106610	22	1246											
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	32037571	32037571	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggtcacggtggtcacctgCagctcctcccccagacgggg	14	15	2	1	rs376818111		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_019105	exon15	c.G5346A	p.L1782L	CACCTGCAGCTCC		74	24	0.32	110	0	0				51	17	0.33				T	32037571	C	T	32037571	2	4	20	1	0	0	0	0	0	0	0	1	16405	697	25	2		2	TNXB	6	32037571	Silent	SNP	C	TCGA-2G-AAG5-01A-11D-A42Y-10	29114	32037571	139077496	23	1247											
SYNGAP1	8831	mdanderson.org	37	chr6	33406612	33406612	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaggtagaccctatcaagtGcacagcatccagtttggcag	11	11	1	1	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_006772	exon10	c.G1592A	p.C531Y	TCAAGTGCACAGC		50	3	0.06	79	0	0				33	0	0				A	33406612	G	A	33406612	3	1	20	1	0	0	0	0	1	0	0	0	15503	1319	46	2	1630	2	SYNGAP1	6	33406612	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	1369041	33406612	137708455	24	1248											
AGR3	155465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	16918209	16918209	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaagaaactgtgacgagtaAgaggcagagacccaaagctg	14	7	0	4	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	AGR3,NS,carcinoma,+1,1	AGR3	NM_176813	exon2	c.T34C	p.L12L	CGAGTAAGAGGCA		74	32	0.43	87	0	0		1	1	31	16	0.52				G	16918209	A	G	16918209	2	3	20	1	0	0	0	0	0	0	0	1	393	69	3	4		4	AGR3	7	16918209	Silent	SNP	A	TCGA-2G-AAG5-01A-11D-A42Y-10		16918209	142220454	25	1249											
TFR2	7036	mdanderson.org	37	chr7	100231108	100231108	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcttctggcgggagagcGccgcgcgaatgtcctgagtc	15	13	1	2	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_003227	exon4	c.C545T	p.A182V	GAGAGCGCCGCGC		35	3	0.09	41	0	0				2	0	0				A	100231108	G	A	100231108	3	1	20	1	0	0	0	0	1	0	0	0	15870	1087	38	1	1920	1	TFR2	7	100231108	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	83312899	100231108	58907555	26	1250											
DOCK4	9732	mdanderson.org	37	chr7	111400315	111400315	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcatgggggaactcgttcaGcattctctgttggaaggctt	14	8	2	0	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_014705	exon39	c.C4057T	p.L1353L	CGTTCAGCATTCT		58	5	0.09	66	0	0				12	0	0				A	111400315	G	A	111400315	2	1	20	1	0	0	0	0	0	0	0	1	4716	962	34	2		2	DOCK4	7	111400315	Silent	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	11169207	111400315	47738348	27	1251											
GPR37	2861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	124386667	124386667	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgagttccgtggtgtactcgTtgtcattgtcatcactggtc	11	10	3	0	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	GPR37,NS,carcinoma,+1,2	GPR37	NM_005302	exon2	c.A1754G	p.N585S	TACTCGTTGTCAT		63	29	0.46	81	0	0		1	2	26	14	0.54				C	124386667	T	C	124386667	3	2	20	1	0	0	0	0	1	0	0	0	6730	1725	60	4	91	4	GPR37	7	124386667	Missense_Mutation	SNP	T	TCGA-2G-AAG5-01A-11D-A42Y-10	12986352	124386667	34751996	28	1252											
NOS3	4846	mdanderson.org	37	chr7	150706579	150706579	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtctgcccgcccaaccgGcccggccttgtggaggcgct	15	16	1	0	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_000603	exon20	c.G2418T	p.R806R	CAACCGGCCCGGC		21	3	0.14	27	0	0				13	0	0				T	150706579	G	T	150706579	2	4	20	1	0	0	0	0	0	0	0	1	10590	1190	42	2		2	NOS3	7	150706579	Silent	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	26319912	150706579	8432084	29	1253											
PREX2	80243	broad.mit.edu	37	chr8	68956766	68956766	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tacagatggacatcggtaccTttttcgtggccggatcaaca	10	10	1	1	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	PREX2	NM_025170	exon8	c.T884C	p.L295P	GGTACCTTTTTCG		173	3	0.02	150	0	0		614		7	0	0				C	68956766	T	C	68956766	3	2	20	1	0	0	0	0	1	0	0	0	12528	1609	56	4	914	4	PREX2	8	68956766	Missense_Mutation	SNP	T	TCGA-2G-AAG5-01A-11D-A42Y-10		68956766	77407256	30	1254											
LRSAM1	90678	mdanderson.org	37	chr9	130249959	130249959	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtctttctggcagcatgGccgaaatggatgaacgattc	12	9	2	1	rs372452916	alternate_allele	TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_001190723	exon18	c.G1264T	p.A422S	AGCATGGCCGAAA		33	3	0.09	54	0	0				62	0	0				T	130249959	G	T	130249959	3	4	20	1	0	0	0	0	1	0	0	0	9087	1203	42	2	1326	2	LRSAM1	9	130249959	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10		130249959	10963472	31	1255											
LRRC8A	56262	broad.mit.edu	37	chr9	131670156	131670156	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctggacaagaaggagggggAgcaagccaaggcgctgtttg	18	7	0	1	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	LRRC8A	NM_001127244	exon3	c.A713G	p.E238G	AGGGGGAGCAAGC		78	5	0.06	107	2	0.0186915888		69		99	1	0.01				G	131670156	A	G	131670156	3	3	20	1	0	0	0	0	1	0	0	0	9065	304	11	4	715	4	LRRC8A	9	131670156	Missense_Mutation	SNP	A	TCGA-2G-AAG5-01A-11D-A42Y-10	1420197	131670156	9543275	32	1256											
TLX1	3195	broad.mit.edu	37	chr10	102891433	102891433	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcctccaggacggagaataCggccttggctgcttggtcgg	15	12	0	1	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	TLX1	NM_005521	exon1	c.C135T	p.Y45Y	AGAATACGGCCTT		93	5	0.05	67	0	0		20		1	0	0				T	102891433	C	T	102891433	2	4	20	1	0	0	0	0	0	0	0	1	16018	547	19	1		1	TLX1	10	102891433	Silent	SNP	C	TCGA-2G-AAG5-01A-11D-A42Y-10		102891433	32643314	33	1257											
PNLIPRP2	5408	broad.mit.edu	37	chr10	118386476	118386476	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaacattcgggttgttggGgcggagacagctttcttaat	12	7	1	1	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	PNLIPRP2	.	.	.	.	TGTTGGGGCGGAG		174	4	0.02	137	0	0		103		2	0	0				T	118386476	G	T	118386476	1	4	20	0	1	0	0	0	0	0	0	0	12198	1219	43	3		3	PNLIPRP2	10	118386476	RNA	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	15495043	118386476	17148271	34	1258											
DBX1	120237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	20180817	20180818	+	Missense_Mutation	DNP	TG	TG	CT													aggtcttgggagggacgctcTggagcaaggctggggatgtt					novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	TG	TG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_001029865	exon2	c.C388A	p.Q130R	ACGCTCTGGAGCA		77	10	0.13	94	0	0				0	0					CT	20180818	TG	CT	20180817	3	2	20	1	0	0	0	0	1	0	0	0	4283	1580	55	4	771	4	DBX1	11	20180817	Missense_Mutation	DNP	TG	TCGA-2G-AAG5-01A-11D-A42Y-10		20180817	114825699	35	1259											
FNBP4	23360	mdanderson.org	37	chr11	47755578	47755578	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaaaaaaagacttaccTcagtctgtaagagcagcaca	6	8	2	2	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	FNBP4,NS,carcinoma,-1,1	FNBP4	NM_015308	exon10	c.A1685G	p.E562G	CTTACCTCAGTCT		38	10	0.26	45	8	0.1777777778		-1	1	84	0	0				C	47755578	T	C	47755578	3	2	20	1	0	0	0	0	1	0	0	0	5999	1565	54	4	1400	4	FNBP4	11	47755578	Missense_Mutation	SNP	T	TCGA-2G-AAG5-01A-11D-A42Y-10	27574761	47755578	87250938	36	1260											
MEN1	4221	mdanderson.org	37	chr11	64577508	64577508	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcctctcggcccagctcgGcagcaaacaggcgcaccacg	11	18	1	0	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_130803	exon2	c.C74T	p.A25V	AGCTCGGCAGCAA		36	3	0.08	39	0	0				32	0	0				A	64577508	G	A	64577508	3	1	20	1	0	0	0	0	1	0	0	0	9521	1203	42	2	1809	2	MEN1	11	64577508	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	16821930	64577508	70429008	37	1261											
SIPA1	6494	mdanderson.org	37	chr11	65414526	65414526	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccgtgggcgaggtggtggCgcgcctgcaggtgagctgga	21	9	0	1	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_006747	exon8	c.C2021T	p.A674V	TGGTGGCGCGCCT		8	2	0.25	15	0	0				13	0	0				T	65414526	C	T	65414526	3	4	20	1	0	0	0	0	1	0	0	0	14382	768	27	1	2047	1	SIPA1	11	65414526	Missense_Mutation	SNP	C	TCGA-2G-AAG5-01A-11D-A42Y-10	837018	65414526	69591990	38	1262											
MYEOV	26579	broad.mit.edu	37	chr11	69063822	69063822	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctctcctcctccaccaccTcctcctcctcctcctcatca	0	25	3	0	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	MYEOV	NM_138768	exon3	c.T905A	p.L302H	ACCACCTCCTCCT		92	6	0.07	103	2	0.0194174757		42		4	0	0				A	69063822	T	A	69063822	3	1	20	1	0	0	0	0	1	0	0	0	10072	1551	54	5	911	5	MYEOV	11	69063822	Missense_Mutation	SNP	T	TCGA-2G-AAG5-01A-11D-A42Y-10	3649296	69063822	65942694	39	1263											
SLC37A4	2542	mdanderson.org	37	chr11	118897770	118897770	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacaggtaaggggacagcaGcagctcctgcagggtgctct	14	12	1	0	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_001467	exon6	c.C661A	p.L221M	ACAGCAGCAGCTC		19	2	0.11	16	0	0				130	0	0				T	118897770	G	T	118897770	3	4	20	1	0	0	0	0	1	0	0	0	14654	962	34	2	718	2	SLC37A4	11	118897770	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	49833948	118897770	16108746	40	1264											
ROBO3	64221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	124740969	124740969	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctcctggagagagcgtgGctttccagtgcgagaccaaa	13	11	0	2	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_022370	exon7	c.G1093A	p.A365T	AGCGTGGCTTTCC		86	35	0.41	85	0	0				0	0					A	124740969	G	A	124740969	3	1	20	1	0	0	0	0	1	0	0	0	13566	1203	42	2	1119	2	ROBO3	11	124740969	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	5843199	124740969	10265547	41	1265											
WNT1	7471	broad.mit.edu	37	chr12	49375067	49375067	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgcgaccgcttcgacggcGcctcgcgcgtcctgtacggc	14	17	0	0	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	WNT1	NM_005430	exon4	c.G757T	p.A253S	GACGGCGCCTCGC		110	6	0.05	76	1	0.0131578947		13		0	0					T	49375067	G	T	49375067	3	4	20	1	0	0	0	0	1	0	0	0	17440	1087	38	1	771	1	WNT1	12	49375067	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10		49375067	84476828	42	1266											
CIT	11113	mdanderson.org	37	chr12	120127985	120127985	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggacagcggggtcctcaCggctcccgcaggcagccggc	16	16	1	0	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_001206999	exon47	c.G6157A	p.V2053M	TCCTCACGGCTCC		15	2	0.13	16	0	0				8	0	0				T	120127985	C	T	120127985	3	4	20	1	0	0	0	0	1	0	0	0	3461	536	19	1	60	1	CIT	12	120127985	Missense_Mutation	SNP	C	TCGA-2G-AAG5-01A-11D-A42Y-10	70752918	120127985	13723910	43	1267											
ACIN1	22985	broad.mit.edu	37	chr14	23528416	23528416	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actccggcttctgctgtggcGcttggtgtccctgcgatccc	12	15	1	0	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	ACIN1_ENST00000338631,NS,carcinoma,+1,2	ACIN1	NM_014977	exon19	c.C3967T	p.R1323C	TGTGGCGCTTGGT		111	4	0.04	159	0	0		147	2	300	27	0.09	rescued with RNA-seq			A	23528416	G	A	23528416	3	1	20	1	0	0	0	0	1	0	0	0	142	1087	38	1	62	1	ACIN1	14	23528416	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10		23528416	83821124	44	1268											
TRIM9	114088	mdanderson.org	37	chr14	51489585	51489585	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatgctccttgttgacgcGggccagcagctgggcttttc	12	13	1	1	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	TRIM9_ENST00000360392,NS,carcinoma,+2,5	TRIM9_ENST00000360392	NM_052978	exon3	c.C1009A	p.R337S	TGACGCGGGCCAG		48	3	0.06	72	0	0		2	5	0	0					T	51489585	G	T	51489585	3	4	20	1	0	0	0	0	1	0	0	0	16609	1116	39	1	1205	1	TRIM9	14	51489585	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	27961169	51489585	55859955	45	1269											
FOS	2353	mdanderson.org	37	chr14	75747810	75747810	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatgacttcctgttcccaGcatcatccaggcccagtggc	9	14	1	2	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_005252	exon4	c.G826T	p.A276S	TTCCCAGCATCAT		22	2	0.09	35	0	0				582	0	0				T	75747810	G	T	75747810	3	4	20	1	0	0	0	0	1	0	0	0	6017	971	34	2	840	2	FOS	14	75747810	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	24258225	75747810	31601730	46	1270											
DISP2	85455	mdanderson.org	37	chr15	40660600	40660600	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttcctgttcgagcagctgCcgcagggcgagggcggccac	16	13	0	0	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_033510	exon8	c.C2287T	p.P763S	CAGCTGCCGCAGG		39	3	0.08	42	0	0				0	0					T	40660600	C	T	40660600	3	4	20	1	0	0	0	0	1	0	0	0	4568	739	26	2	2317	2	DISP2	15	40660600	Missense_Mutation	SNP	C	TCGA-2G-AAG5-01A-11D-A42Y-10		40660600	61870792	47	1271											
FSD2	123722	hgsc.bcm.edu	37	chr15	83455275	83455275	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gctcttacctccacagtgatGaaaacctcctccaaatgatt	5	13	1	3	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_001007122	exon3	c.C723A	p.F241L	AGTGATGAAAACC		96	5	0.05	120	0	0				0	0					T	83455275	G	T	83455275	3	4	20	1	0	0	0	0	1	0	0	0	6105	1281	45	3	1570	3	FSD2	15	83455275	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	42794675	83455275	19076117	48	1272											
KIF7	374654	mdanderson.org	37	chr15	90188603	90188603	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcatccaactcctcaaGgcaaagctctgggcccttcc	9	16	2	0	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_198525	exon9	c.C2002A	p.L668I	CCTCAAGGCAAAG		55	3	0.05	62	0	0				22	0	0				T	90188603	G	T	90188603	3	4	20	1	0	0	0	0	1	0	0	0	8350	1000	35	3	2073	3	KIF7	15	90188603	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	6733328	90188603	12342789	49	1273											
FAM169B	283777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	98982942	98982942	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccactccacactctggatcaTcctttgtgtcttccagttct	5	15	4	0	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_182562	exon7	c.A497T	p.D166V	GGATCATCCTTTG		143	43	0.3	191	0	0				0	0					A	98982942	T	A	98982942	3	1	20	1	0	0	0	0	1	0	0	0	5517	1435	50	5	85	5	FAM169B	15	98982942	Missense_Mutation	SNP	T	TCGA-2G-AAG5-01A-11D-A42Y-10	8794339	98982942	3548450	50	1274											
RAB11FIP3	9727	mdanderson.org	37	chr16	560707	560707	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcaggagctgagagcctGcgagatggtcctggaagaga	18	7	0	3	rs190687913	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_014700	exon9	c.G1547T	p.C516F	GAGCCTGCGAGAT		43	3	0.07	40	0	0				64	0	0				T	560707	G	T	560707	3	4	20	1	0	0	0	0	1	0	0	0	12946	1319	46	2	1600	2	RAB11FIP3	16	560707	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10		560707	89794046	51	1275											
RHBDL1	9028	mdanderson.org	37	chr16	727545	727545	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgtgctcggcacacctgGccaacgttgtcatggtaacg	11	14	1	0	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_003961	exon5	c.G970T	p.A324S	CACCTGGCCAACG		13	2	0.15	21	0	0				2	0	0				T	727545	G	T	727545	3	4	20	1	0	0	0	0	1	0	0	0	13370	1203	42	2	988	2	RHBDL1	16	727545	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	166838	727545	89627208	52	1276											
ZNF598	90850	mdanderson.org	37	chr16	2049697	2049697	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctgctggcaggagcttccGgggcctgcaaagcccctggg	15	14	1	0	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_178167	exon11	c.C1853T	p.P618L	GCTTCCGGGGCCT		24	2	0.08	14	0	0				40	1	0.03				A	2049697	G	A	2049697	3	1	20	1	0	0	0	0	1	0	0	0	18084	1116	39	1	877	1	ZNF598	16	2049697	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	1322152	2049697	88305056	53	1277											
SRCAP	10847	hgsc.bcm.edu;bcgsc.ca	37	chr16	30735366	30735367	+	Frame_Shift_Ins	INS	-	-	T													tccagggttgaactcaaccgINStggccccagcatgctcacct					novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	SRCAP	NM_006662	exon25	c.4621_4622insT	p.V1541fs	TCAACCGTGGCCC		142	44	0.31	120	0	0		298		102	0	0				T	30735367	-	T	30735366	7	5	20	1	0	1	1	0	0	0	0	0	15190	1145	40	0	4711	0	SRCAP	16	30735366	Frame_Shift_Ins	INS	-	TCGA-2G-AAG5-01A-11D-A42Y-10	28685669	30735366	59619387	54	1278											
C16orf78	123970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	49430428	49430428	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttagatcccatgttacaggaGggtacctttaacagccagag	10	9	0	2	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_144602	exon4	c.G489C	p.E163D	ACAGGAGGGTACC		191	45	0.24	136	0	0				0	0					C	49430428	G	C	49430428	3	2	20	1	0	0	0	0	1	0	0	0	1842	991	35	5	503	5	C16orf78	16	49430428	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	18695062	49430428	40924325	55	1279											
TAF1C	9013	mdanderson.org	37	chr16	84212612	84212612	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggacgggtgtgtgctgctGggagcgagtggcccggacgc	21	9	0	0	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_005679	exon14	c.C2545A	p.Q849K	GCTGCTGGGAGCG		20	3	0.15	36	0	0				194	0	0				T	84212612	G	T	84212612	3	4	20	1	0	0	0	0	1	0	0	0	15577	1357	47	3	68	3	TAF1C	16	84212612	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	34782184	84212612	6142141	56	1280											
SAMD14	201191	broad.mit.edu;mdanderson.org	37	chr17	48190406	48190406	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcatgagagttgctgagccCcaggctctggggaggagtcc	16	10	2	2	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	SAMD14	NM_174920	exon11	c.G1189T	p.G397W	TGAGCCCCAGGCT		41	3	0.07	34	0	0		36		57	0	0				A	48190406	C	A	48190406	3	1	20	1	0	0	0	0	1	0	0	0	13870	623	22	3	152	3	SAMD14	17	48190406	Missense_Mutation	SNP	C	TCGA-2G-AAG5-01A-11D-A42Y-10		48190406	33004804	57	1281											
SALL3	27164	mdanderson.org	37	chr18	76753052	76753052	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccggggtccctgctgggtgCggcgcccggcctgccaagtc	16	17	0	0	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	SALL3,NS,carcinoma,-1,1	SALL3	NM_171999	exon2	c.C1061T	p.A354V	TGGGTGCGGCGCC		12	2	0.17	16	0	0		-1	1	0	0					T	76753052	C	T	76753052	3	4	20	1	0	0	0	0	1	0	0	0	13863	768	27	1	1067	1	SALL3	18	76753052	Missense_Mutation	SNP	C	TCGA-2G-AAG5-01A-11D-A42Y-10		76753052	1324196	58	1282											
AZU1	566	hgsc.bcm.edu;broad.mit.edu	37	chr19	831856	831857	+	In_Frame_Ins	INS	-	-	CCGGGA													tcgatggtgttctcaacaacINSccgggaccggggccagccta					novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	AZU1	NM_001700	exon5	c.735_736insCCGGGA	p.N245delinsNPG	CAACAACCCGGGA		125	38	0.3	156	0	0		31		2	0	0				CCGGGA	831857	-	CCGGGA	831856	7	5	20	1	0	1	1	0	0	0	0	0	1241	506	18	0	753	0	AZU1	19	831856	In_Frame_Ins	INS	-	TCGA-2G-AAG5-01A-11D-A42Y-10		831856	58297127	59	1283											
ASNA1	439	ucsc.edu;bcgsc.ca	37	chr19	12858375	12858375	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaagatgtgtgaggcccGtcacaagatccaggccaagt	12	11	1	3	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	ASNA1	NM_004317	exon6	c.G884A	p.R295H	AGGCCCGTCACAA		80	33	0.41	117	2	0.0170940171		23		237	105	0.44				A	12858375	G	A	12858375	3	1	20	1	0	0	0	0	1	0	0	0	1046	1145	40	1	906	1	ASNA1	19	12858375	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	12026519	12858375	46270608	60	1284											
CPAMD8	27151	mdanderson.org	37	chr19	17004138	17004138	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcacaggaggccgaggCccggctgtgaccctggagat	15	13	1	2	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_015692	exon42	c.G5580A	p.G1860G	CCGAGGCCCGGCT		26	3	0.12	24	0	0				1088	0	0				T	17004138	C	T	17004138	2	4	20	1	0	0	0	0	0	0	0	1	3818	726	26	2		2	CPAMD8	19	17004138	Silent	SNP	C	TCGA-2G-AAG5-01A-11D-A42Y-10	4145763	17004138	42124845	61	1285											
RHPN2	85415	mdanderson.org	37	chr19	33517507	33517507	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagctcagctccagccgcaCttgctcccgcacctttgagt	9	16	1	1	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	RHPN2,face,carcinoma,0,2	RHPN2	NM_033103	exon3	c.G217A	p.V73M	GCCGCACTTGCTC		11	3	0.27	27	0	0		0	2	24	0	0				T	33517507	C	T	33517507	3	4	20	1	0	0	0	0	1	0	0	0	13400	565	20	3	1895	3	RHPN2	19	33517507	Missense_Mutation	SNP	C	TCGA-2G-AAG5-01A-11D-A42Y-10	16513369	33517507	25611476	62	1286											
PAF1	54623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr19	39880019	39880019	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caccaccttcgcgtgctgctGggatctggggtgggaaatca	14	11	2	0	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_019088	exon6	c.C364T	p.Q122X	GCTGCTGGGATCT		80	30	0.38	128	0	0				136	5	0.04				A	39880019	G	A	39880019	4	1	20	1	0	0	0	0	0	1	0	0	11429	1357	47	3	1267	3	PAF1	19	39880019	Nonsense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	6362512	39880019	19248964	63	1287											
NKPD1	284353	bcgsc.ca	37	chr19	45655550	45655550	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgaagagctcggggtcgccGtccaggtcgagcacgttctg	15	12	1	1	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	NKPD1	NM_198478	exon4	c.C2145A	p.D715E	GTCGCCGTCCAGG		67	4	0.06	79	0	0		46		0	0					T	45655550	G	T	45655550	3	4	20	1	0	0	0	0	1	0	0	0	10492	1136	40	1	357	1	NKPD1	19	45655550	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	5775531	45655550	13473433	64	1288											
CCDC155	147872	mdanderson.org	37	chr19	49912498	49912498	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtgggctggaccgagctGctacccccatcgctgggctt	14	13	0	1	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	CCDC155,rectum,carcinoma,0,1	CCDC155	NM_144688	exon14	c.G1104T	p.L368L	CGAGCTGCTACCC		50	3	0.06	65	0	0		0	1	0	0					T	49912498	G	T	49912498	2	4	20	1	0	0	0	0	0	0	0	1	2807	1306	46	2		2	CCDC155	19	49912498	Silent	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	4256948	49912498	9216485	65	1289											
BTG3	10950	mdanderson.org	37	chr21	18981446	18981446	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaaagaagacaacggcaGcaatttcattcttcattttt	6	7	3	3	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_006806	exon2	c.C17A	p.A6D	ACGGCAGCAATTT		111	5	0.05	97	0	0				67	0	0				T	18981446	G	T	18981446	3	4	20	1	0	0	0	0	1	0	0	0	1558	971	34	2	893	2	BTG3	21	18981446	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10		18981446	29148449	66	1290											
KRTAP10-9	386676	mdanderson.org	37	chr21	46047200	46047200	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgcgccaccagctgctgcGccccggccccctgcctgacc	11	22	0	1	rs201090014	bycluster	TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_198690	exon1	c.G112A	p.A38T	TGCTGCGCCCCGG		43	3	0.07	29	0	0				0	0					A	46047200	G	A	46047200	3	1	20	1	0	0	0	0	1	0	0	0	8558	1087	38	1	114	1	KRTAP10-9	21	46047200	Missense_Mutation	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	27065754	46047200	2082695	67	1291											
CSF2RA	0	broad.mit.edu	37	chrX	1422911	1422911	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctcggcttcctctttaaaAggtaacctgtgaaacacctg	7	12	1	1	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	CSF2RA	NM_001161530	exon10	c.A1144G	p.R382G	TTTAAAAGGTAAC		521	6	0.01	680	0	0		153		23	0	0				G	1422911	A	G	1422911	5	3	20	1	0	0	0	0	0	0	1	0	3959	86	3	4	1182	4	CSF2RA	23	1422911	Splice_Site	SNP	A	TCGA-2G-AAG5-01A-11D-A42Y-10		1422911	153847649	68	1292											
MXRA5	25878	broad.mit.edu	37	chrX	3229354	3229354	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agacgacatagcgcttggtgCgtccaccgctgtcatccgac	11	14	1	1	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	MXRA5	NM_015419	exon7	c.G6890A	p.R2297H	TTGGTGCGTCCAC		48	3	0.06	62	0	0		815		432	0	0				T	3229354	C	T	3229354	3	4	20	1	0	0	0	0	1	0	0	0	10050	768	27	1	1600	1	MXRA5	23	3229354	Missense_Mutation	SNP	C	TCGA-2G-AAG5-01A-11D-A42Y-10	1806443	3229354	152041206	69	1293											
G6PD	2539	hgsc.bcm.edu	37	chrX	153764200	153764200	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtcagccactgtgaggcgGgaacgggcatagcccacgat	14	11	1	1	novel		TCGA-2G-AAG5-01A-11D-A42Y-10	TCGA-2G-AAG5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27065dd-9387-4607-90e4-352b020179ff	02827416-0bd6-4593-95a9-0a8b5ee9b4f6	.	.	NM_000402	exon4	c.C309A	p.S103S	GAGGCGGGAACGG		90	5	0.06	123	0	0				118	0	0				T	153764200	G	T	153764200	2	4	20	1	0	0	0	0	0	0	0	1	6180	1219	43	3		3	G6PD	23	153764200	Silent	SNP	G	TCGA-2G-AAG5-01A-11D-A42Y-10	150534846	153764200	1506360	70	1294											
MORN1	79906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	2252853	2252853	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggcggctctggggtgcagCtgtgggcggcctgccagctg	19	12	1	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_024848	exon14	c.G1463A	p.S488N	GTGCAGCTGTGGG		37	15	0.41	63	0	0				6	6	1				T	2252853	C	T	2252853	3	4	21	1	0	0	0	0	1	0	0	0	9756	797	28	2	34	2	MORN1	1	2252853	Missense_Mutation	SNP	C	TCGA-2G-AAG6-01A-11D-A42Y-10		2252853	246997768	1	1295											
ECE1	1889	mdanderson.org	37	chr1	21585201	21585201	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacctggatcacgttgctGttggagttcttggaatcggc	12	10	3	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001397	exon6	c.C747A	p.N249K	GTTGCTGTTGGAG		105	5	0.05	111	0	0				71	0	0				T	21585201	G	T	21585201	3	4	21	1	0	0	0	0	1	0	0	0	4915	1368	48	3	1621	3	ECE1	1	21585201	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	19332348	21585201	227665420	2	1296											
COL8A2	1296	broad.mit.edu;mdanderson.org	37	chr1	36565807	36565807	+	Translation_Start_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caccagcaccagtagcagcaGcagcagcgaagacaggggtg	14	12	0	1	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	COL8A2	NM_005202	exon1	c.C37A	p.L13M	GCAGCAGCAGCAG		51	3	0.06	50	0	0		41		6	0	0				T	36565807	G	T	36565807	1	4	21	1	0	0	0	0	0	0	0	0	3729	962	34	2		2	COL8A2	1	36565807	Translation_Start_Site	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	14980606	36565807	212684814	3	1297											
CSF1	1435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	110459933	110459933	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaagatccagtgtgctacCttaagaaggcatttctcctg	9	9	1	3	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_172210	exon4	c.C244T	p.L82F	TGCTACCTTAAGA		77	25	0.32	88	0	0				18	8	0.44				T	110459933	C	T	110459933	3	4	21	1	0	0	0	0	1	0	0	0	3956	681	24	3	258	3	CSF1	1	110459933	Missense_Mutation	SNP	C	TCGA-2G-AAG6-01A-11D-A42Y-10	73894126	110459933	138790688	4	1298											
OVGP1	5016	bcgsc.ca	37	chr1	111957533	111957533	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgactcacaggggtcacagaCtgatgacccacaggggtcag	13	11	3	4	rs112145355	bycluster	TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	OVGP1	NM_002557	exon11	c.G1590A	p.Q530Q	CACAGACTGATGA		30	5	0.17	100	1	0.01		177		0	0					T	111957533	C	T	111957533	2	4	21	1	0	0	0	0	0	0	0	1	11371	564	20	3		3	OVGP1	1	111957533	Silent	SNP	C	TCGA-2G-AAG6-01A-11D-A42Y-10	1497600	111957533	137293088	5	1299											
CELF3	11189	hgsc.bcm.edu	37	chr1	151678722	151678722	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctttgctgctgctgctgTtgctgctgctgctgctgctg	12	12	1	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	CELF3,caecum,carcinoma,0,1	CELF3	NM_007185	exon10	c.A1104G	p.Q368Q	CTGCTGTTGCTGC		35	3	0.09	40	1	0.025		0	1	0	0					C	151678722	T	C	151678722	2	2	21	1	0	0	0	0	0	0	0	1	3239	1722	60	4		4	CELF3	1	151678722	Silent	SNP	T	TCGA-2G-AAG6-01A-11D-A42Y-10	39721189	151678722	97571899	6	1300											
RUSC1	23623	broad.mit.edu	37	chr1	155292770	155292770	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtcccgccccggcccccAcccccgcctgtccctccccg	8	26	0	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	RUSC1	NM_001105204	exon2	c.A1206C	p.P402P	GCCCCCACCCCCG		60	24	0.4	24	8	0.3333333333		85		1	0	0				C	155292770	A	C	155292770	2	2	21	1	0	0	0	0	0	0	0	1	13801	146	6	4		4	RUSC1	1	155292770	Silent	SNP	A	TCGA-2G-AAG6-01A-11D-A42Y-10	3614048	155292770	93957851	7	1301											
METTL13	51603	broad.mit.edu	37	chr1	171761355	171761355	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcctggactatatcgccaGcttggcaggaggaggagaag	16	8	0	1	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	METTL13	NM_015935	exon6	c.G1673T	p.S558I	TCGCCAGCTTGGC		161	4	0.02	99	0	0		67		51	0	0				T	171761355	G	T	171761355	3	4	21	1	0	0	0	0	1	0	0	0	9546	971	34	2	1695	2	METTL13	1	171761355	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	16468585	171761355	77489266	8	1302											
XPR1	9213	broad.mit.edu	37	chr1	180756959	180756959	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttccaaacctgtgaaaaAgaacttgccaaaatcaacac	4	10	1	2	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	XPR1	NM_001135669	exon3	c.A192G	p.K64K	TGAAAAAGAACTT		540	5	0.01	381	0	0		76		20	0	0				G	180756959	A	G	180756959	2	3	21	1	0	0	0	0	0	0	0	1	17510	69	3	4		4	XPR1	1	180756959	Silent	SNP	A	TCGA-2G-AAG6-01A-11D-A42Y-10	8995604	180756959	68493662	9	1303											
RGS7	6000	broad.mit.edu	37	chr1	240975327	240975327	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accccatcgttttaccctctGctggctcggttctttgctat	7	14	2	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	RGS7_ENST00000366565,NS,carcinoma,0,2	RGS7	NM_002924	exon14	c.C973T	p.Q325X	CCCTCTGCTGGCT		137	4	0.03	96	0	0		308	2	5	0	0				A	240975327	G	A	240975327	4	1	21	1	0	0	0	0	0	1	0	0	13359	1328	46	2	510	2	RGS7	1	240975327	Nonsense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	60218368	240975327	8275294	10	1304											
ASAP2	8853	mdanderson.org	37	chr2	9533770	9533770	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcccgcagaagaagcctgCgccggggtaagccaccccca	11	18	0	2	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_003887	exon24	c.C2678T	p.A893V	AGCCTGCGCCGGG		30	3	0.1	20	0	0				41	0	0				T	9533770	C	T	9533770	3	4	21	1	0	0	0	0	1	0	0	0	1010	768	27	1	2772	1	ASAP2	2	9533770	Missense_Mutation	SNP	C	TCGA-2G-AAG6-01A-11D-A42Y-10		9533770	233665603	11	1305											
SMPD4	55627	broad.mit.edu	37	chr2	130913640	130913640	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acacaccggggctgggagtcGctgcccggagcctgcttgtc	15	14	0	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	SMPD4	NM_017951	exon14	c.C1374T	p.S458S	GGAGTCGCTGCCC		176	4	0.02	125	0	0		67		93	0	0				A	130913640	G	A	130913640	2	1	21	1	0	0	0	0	0	0	0	1	14860	1078	38	1		1	SMPD4	2	130913640	Silent	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	121379870	130913640	112285733	12	1306											
DGKD	8527	broad.mit.edu	37	chr2	234368884	234368884	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggaagacaagcagaagtgCgagctgccccgccctccatc	12	14	0	2	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	DGKD	NM_152879	exon24	c.C2874A	p.C958X	GAAGTGCGAGCTG		257	4	0.02	233	0	0		106		29	0	0				A	234368884	C	A	234368884	4	1	21	1	0	0	0	0	0	1	0	0	4495	776	27	1	2992	1	DGKD	2	234368884	Nonsense_Mutation	SNP	C	TCGA-2G-AAG6-01A-11D-A42Y-10	103455244	234368884	8830489	13	1307											
FBLN2	2199	broad.mit.edu	37	chr3	13612701	13612701	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacagtgaggaggaagaagaGgaggaggaggagagagagga	22	1	0	5	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	FBLN2	NM_001998	exon2	c.G846A	p.E282E	AGAAGAGGAGGAG		70	3	0.04	76	0	0		137		55	0	0				A	13612701	G	A	13612701	2	1	21	1	0	0	0	0	0	0	0	1	5731	991	35	3		3	FBLN2	3	13612701	Silent	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10		13612701	184409729	14	1308											
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	52668670	52668671	+	Frame_Shift_Ins	INS	-	-	T													tgctggtaataatcagggtaINSttttttctttgaaggcaaat					novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	PBRM1	NM_018313	exon12	c.1249_1250insA	p.Y417fs	CAGGGTATTTTTT		141	45	0.32	129	0	0		1252		20	0	0				T	52668671	-	T	52668670	7	5	21	1	0	1	1	0	0	0	0	0	11537	449	16	0	3731	0	PBRM1	3	52668670	Frame_Shift_Ins	INS	-	TCGA-2G-AAG6-01A-11D-A42Y-10	39055969	52668670	145353760	15	1309											
CARD6	84674	broad.mit.edu	37	chr5	40841684	40841684	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttaattttggtacagaaaaAgggagaggcgacctgtcagc	13	6	1	2	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	CARD6	NM_032587	exon1	c.A200G	p.K67R	AGAAAAAGGGAGA		114	3	0.03	140	1	0.0071428571		141		3	0	0				G	40841684	A	G	40841684	3	3	21	1	0	0	0	0	1	0	0	0	2668	72	3	4	202	4	CARD6	5	40841684	Missense_Mutation	SNP	A	TCGA-2G-AAG6-01A-11D-A42Y-10		40841684	140073576	16	1310											
RREB1	6239	mdanderson.org	37	chr6	7231407	7231407	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tactcctcagccctggtcagCagccctccactcgtgggcag	10	17	2	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001003700	exon10	c.C3075T	p.S1025S	GGTCAGCAGCCCT		51	3	0.06	39	0	0				12	0	0				T	7231407	C	T	7231407	2	4	21	1	0	0	0	0	0	0	0	1	13730	709	25	2		2	RREB1	6	7231407	Silent	SNP	C	TCGA-2G-AAG6-01A-11D-A42Y-10		7231407	163883660	17	1311											
VARS2	57176	hgsc.bcm.edu;broad.mit.edu	37	chr6	30893760	30893760	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caggaccccatcagaaggggAggcagggactcagaggcaac	15	11	2	2	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001167734	exon29	c.A3155G	p.E1052G	AAGGGGAGGCAGG		152	7	0.05	135	0	0				36	0	0				G	30893760	A	G	30893760	3	3	21	1	0	0	0	0	1	0	0	0	17183	304	11	4	3269	4	VARS2	6	30893760	Missense_Mutation	SNP	A	TCGA-2G-AAG6-01A-11D-A42Y-10	23662353	30893760	140221307	18	1312											
COL21A1	0	broad.mit.edu	37	chr6	56035495	56035495	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgtgagccattaattacGctggttgttgtaaataataa	8	5	0	1	rs41271846	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	COL21A1	NM_030820	exon5	c.C978A	p.S326R	AATTACGCTGGTT		228	4	0.02	180	0	0		201		13	0	0				T	56035495	G	T	56035495	3	4	21	1	0	0	0	0	1	0	0	0	3703	1078	38	1	1999	1	COL21A1	6	56035495	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	25141735	56035495	115079572	19	1313											
TXLNB	167838	broad.mit.edu	37	chr6	139583903	139583903	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcacgtgcccgctgaagcGcctcttcctgcggataaaaa	9	15	2	1	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	TXLNB	NM_153235	exon5	c.C695A	p.A232E	TGAAGCGCCTCTT		179	6	0.03	142	0	0		96		6	0	0				T	139583903	G	T	139583903	3	4	21	1	0	0	0	0	1	0	0	0	16849	1087	38	1	1383	1	TXLNB	6	139583903	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	83548408	139583903	31531164	20	1314											
NEFL	4747	broad.mit.edu	37	chr8	24813554	24813554	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcgcgctcgccctggagcGcctgcttctcgttggtggca	13	15	1	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	NEFL,trunk,malignant_melanoma,0,1	NEFL	NM_006158	exon1	c.C476A	p.A159E	TGGAGCGCCTGCT		44	4	0.09	27	1	0.037037037		47	1	1	0	0				T	24813554	G	T	24813554	1	4	21	0	1	0	0	0	0	0	0	0	10361	1087	38	1		1	NEFL	8	24813554	RNA	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10		24813554	121550468	21	1315											
PENK	5179	broad.mit.edu	37	chr8	57358406	57358406	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcggccgggcgcactaggCggtagctgcacgtcgcgcaa	16	13	0	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	PENK,caecum,carcinoma,-1,1	PENK	NM_001135690	exon3	c.G107T	p.R36L	ACTAGGCGGTAGC		169	6	0.04	120	1	0.0083333333		59	1	15	0	0				A	57358406	C	A	57358406	3	1	21	1	0	0	0	0	1	0	0	0	11773	768	27	1	704	1	PENK	8	57358406	Missense_Mutation	SNP	C	TCGA-2G-AAG6-01A-11D-A42Y-10	32544852	57358406	89005616	22	1316											
NPR2	4882	mdanderson.org	37	chr9	35794017	35794017	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttggggagagtctccgtGcaggccccacacgtgctaca	12	13	2	1	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	NPR2_ENST00000342694,right_upper_lobe,carcinoma,-2,2	NPR2_ENST00000342694	NM_003995	exon2	c.G790T	p.A264S	CTCCGTGCAGGCC		49	3	0.06	59	0	0		-2	2	17	0	0				T	35794017	G	T	35794017	3	4	21	1	0	0	0	0	1	0	0	0	10642	1319	46	2	796	2	NPR2	9	35794017	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10		35794017	105419414	23	1317											
NANS	54187	mdanderson.org	37	chr9	100839290	100839290	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccttatctggaaaagacaGccaaaaaaggtaagtgtcta	8	7	2	1	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_018946	exon3	c.G439T	p.A147S	AAGACAGCCAAAA		45	3	0.07	42	0	0				86	0	0				T	100839290	G	T	100839290	3	4	21	1	0	0	0	0	1	0	0	0	10202	971	34	2	449	2	NANS	9	100839290	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	65045273	100839290	40374141	24	1318											
AKNA	80709	mdanderson.org	37	chr9	117099491	117099491	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcgcccaggtcgagctggAtggagtgccggtgtctccgg	18	11	1	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_030767	exon22	c.T4163C	p.I1388T	AGCTGGATGGAGT		63	3	0.05	52	0	0				48	1	0.02				G	117099491	A	G	117099491	3	3	21	1	0	0	0	0	1	0	0	0	460	333	12	4	160	4	AKNA	9	117099491	Missense_Mutation	SNP	A	TCGA-2G-AAG6-01A-11D-A42Y-10	16260201	117099491	24113940	25	1319											
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	135140214	135140214	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaccctggggtctggacccCtctggggctatggtaggagg	16	12	2	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_015046	exon26	c.G7446C	p.E2482D	GGACCCCTCTGGG		88	22	0.25	70	0	0				57	31	0.54				G	135140214	C	G	135140214	3	3	21	1	0	0	0	0	1	0	0	0	14194	680	24	5	591	5	SETX	9	135140214	Missense_Mutation	SNP	C	TCGA-2G-AAG6-01A-11D-A42Y-10	18040723	135140214	6073217	26	1320											
CEL	1056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	135940444	135940444	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtctcccgggacctgcccGttatgatctggatctatgga	11	12	3	1	rs201336247	bycluster	TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	CEL,NS,carcinoma,0,1	CEL	NM_001807	exon4	c.G367A	p.V123I	CTGCCCGTTATGA		62	18	0.29	51	0	0		0	1	24	11	0.46				A	135940444	G	A	135940444	3	1	21	1	0	0	0	0	1	0	0	0	3231	1145	40	1	381	1	CEL	9	135940444	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	800230	135940444	5272987	27	1321											
BEND7	222389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	13541880	13541880	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcggtagctcattccacaCaccacgtgaagacgggtgga	14	11	1	2	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001100912	exon2	c.G190A	p.V64M	TCCACACACCACG		135	40	0.3	149	0	0				5	0	0				T	13541880	C	T	13541880	3	4	21	1	0	0	0	0	1	0	0	0	1401	478	17	3	1295	3	BEND7	10	13541880	Missense_Mutation	SNP	C	TCGA-2G-AAG6-01A-11D-A42Y-10		13541880	121992867	28	1322											
NRAP	4892	mdanderson.org	37	chr10	115417240	115417240	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctcacctcatttgccaGtggctgcctgttaggtgcac	9	13	3	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001261463	exon4	c.C349A	p.L117M	TTGCCAGTGGCTG		57	3	0.05	65	0	0				0	0					T	115417240	G	T	115417240	3	4	21	1	0	0	0	0	1	0	0	0	10685	1020	36	3	4999	3	NRAP	10	115417240	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	101875360	115417240	20117507	29	1323											
TRPM5	29850	mdanderson.org	37	chr11	2434720	2434720	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acccacctgaaggtgatgagGttggtatagacgagggcggg	17	7	0	4	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_014555	exon13	c.C1989A	p.N663K	GATGAGGTTGGTA		125	6	0.05	122	0	0				0	0					T	2434720	G	T	2434720	3	4	21	1	0	0	0	0	1	0	0	0	16649	1252	44	3	1556	3	TRPM5	11	2434720	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10		2434720	132571796	30	1324											
OR51V1	283111	mdanderson.org	37	chr11	5221498	5221498	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gataattctggaattagtcaGgatggaggaataacgtagtg	13	3	2	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001004760	exon1	c.C433A	p.L145M	TAGTCAGGATGGA		48	3	0.06	62	0	0				0	0					T	5221498	G	T	5221498	3	4	21	1	0	0	0	0	1	0	0	0	11154	991	35	3	535	3	OR51V1	11	5221498	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	2786778	5221498	129785018	31	1325											
TAF10	6881	mdanderson.org	37	chr11	6633037	6633037	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgggggcgccgcgccacccGccgacaccggagctggagga	17	17	0	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_006284	exon2	c.C245T	p.A82V	CCACCCGCCGACA		42	3	0.07	50	0	0				74	0	0				A	6633037	G	A	6633037	3	1	21	1	0	0	0	0	1	0	0	0	15570	1087	38	1	427	1	TAF10	11	6633037	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	1411539	6633037	128373479	32	1326											
FLRT1	23769	broad.mit.edu;mdanderson.org	37	chr11	63884330	63884330	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcatcccctcggggctgccGcacacgctggaggagctgcg	15	15	0	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	FLRT1	NM_013280	exon2	c.G591A	p.P197P	GCTGCCGCACACG		39	3	0.08	31	0	0		46		2	0	0				A	63884330	G	A	63884330	2	1	21	1	0	0	0	0	0	0	0	1	5970	1074	38	1		1	FLRT1	11	63884330	Silent	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	57251293	63884330	71122186	33	1327											
RPS6KA4	8986	mdanderson.org	37	chr11	64135945	64135945	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccttcgcctccaggactcGcccttcttccagcagtacga	8	18	1	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_003942	exon11	c.G1206T	p.S402S	GGACTCGCCCTTC		43	3	0.07	43	0	0				25	0	0				T	64135945	G	T	64135945	2	4	21	1	0	0	0	0	0	0	0	1	13704	1074	38	1		1	RPS6KA4	11	64135945	Silent	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	251615	64135945	70870571	34	1328											
C11orf65	160140	hgsc.bcm.edu;broad.mit.edu	37	chr11	108256666	108256666	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttgaagttagccgaagaGttgcttgtagcaatttcctt	9	8	0	2	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_152587	exon8	c.C768A	p.N256K	CGAAGAGTTGCTT		95	4	0.04	126	0	0				0	0					T	108256666	G	T	108256666	3	4	21	1	0	0	0	0	1	0	0	0	1660	1020	36	3	181	3	C11orf65	11	108256666	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	44120721	108256666	26749850	35	1329											
HEPACAM	220296	mdanderson.org	37	chr11	124793237	124793237	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaggagagttacccagaccTtttggagggtttccagcagg	13	9	1	2	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_152722	exon4	c.A802G	p.R268G	CAGACCTTTTGGA		31	3	0.1	24	0	0				0	0					C	124793237	T	C	124793237	3	2	21	1	0	0	0	0	1	0	0	0	7092	1623	56	4	464	4	HEPACAM	11	124793237	Missense_Mutation	SNP	T	TCGA-2G-AAG6-01A-11D-A42Y-10	16536571	124793237	10213279	36	1330											
SLC2A14	144195	broad.mit.edu	37	chr12	7982479	7982479	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acaaaacctgtgcagagtccGcagaagaggccaataaccaa	9	11	0	3	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	SLC2A14	NM_153449	exon6	c.C465T	p.C155C	GAGTCCGCAGAAG		793	6	0.01	270	0	0		78		0	0					A	7982479	G	A	7982479	2	1	21	1	0	0	0	0	0	0	0	1	14597	1079	38	1		1	SLC2A14	12	7982479	Silent	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10		7982479	125869416	37	1331											
VPS37B	79720	broad.mit.edu;mdanderson.org	37	chr12	123351821	123351821	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactgtaatcctgggtacgGcacggcctgtcccgaactca	11	14	1	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	VPS37B	NM_024667	exon4	c.C700A	p.P234T	GGTACGGCACGGC		67	4	0.06	47	0	0		26		16	0	0				T	123351821	G	T	123351821	3	4	21	1	0	0	0	0	1	0	0	0	17265	1203	42	2	161	2	VPS37B	12	123351821	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	115369342	123351821	10500074	38	1332											
TRIM13	10206	hgsc.bcm.edu	37	chr13	50588549	50588549	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atatatacatatatatgtatAtatagaacacatggcaagag	6	4	0	2	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	.	.	.	.	ATGTATATATAGA		59	6	0.1	61	0	0				2	0	0				G	50588549	A	G	50588549	1	3	21	0	1	0	0	0	0	0	0	0	16548	464	16	4		4	TRIM13	13	50588549	RNA	SNP	A	TCGA-2G-AAG6-01A-11D-A42Y-10		50588549	64581329	39	1333											
ARHGAP11A	9824	broad.mit.edu	37	chr15	32915726	32915726	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttgcacatctttagaagaCcatattcataccgaagggct	8	10	2	2	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	ARHGAP11A,NS,carcinoma,0,2	ARHGAP11A	NM_199357	exon3	c.C234A	p.D78E	AGAAGACCATATT		266	4	0.02	240	1	0.0041666667		84	2	13	0	0				A	32915726	C	A	32915726	3	1	21	1	0	0	0	0	1	0	0	0	860	506	18	3	244	3	ARHGAP11A	15	32915726	Missense_Mutation	SNP	C	TCGA-2G-AAG6-01A-11D-A42Y-10		32915726	69615666	40	1334											
LMAN1L	79748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	75111137	75111137	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccttcagagcacggatcacCtactgggggcagaggctgcg	14	13	2	2	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_021819	exon5	c.C576T	p.T192T	GATCACCTACTGG		109	22	0.2	75	0	0				1	0	0				T	75111137	C	T	75111137	2	4	21	1	0	0	0	0	0	0	0	1	8877	668	24	3		3	LMAN1L	15	75111137	Silent	SNP	C	TCGA-2G-AAG6-01A-11D-A42Y-10	42195411	75111137	27420255	41	1335											
CASKIN1	57524	mdanderson.org	37	chr16	2230285	2230285	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctggcagggcggggagtGgggtggccctcaggaggcct	23	9	1	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_020764	exon18	c.C3084A	p.P1028P	GGGAGTGGGGTGG		46	3	0.07	31	0	0				2	0	0				T	2230285	G	T	2230285	2	4	21	1	0	0	0	0	0	0	0	1	2684	1335	47	3		3	CASKIN1	16	2230285	Silent	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10		2230285	88124468	42	1336											
ITPRIPL2	162073	mdanderson.org	37	chr16	19126187	19126187	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagctggtgcgggctggccGcgcccgggggtcccccggtc	19	16	0	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001034841	exon1	c.G404T	p.R135L	CTGGCCGCGCCCG		35	3	0.09	53	0	0				30	0	0				T	19126187	G	T	19126187	3	4	21	1	0	0	0	0	1	0	0	0	7968	1087	38	1	406	1	ITPRIPL2	16	19126187	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	16895902	19126187	71228566	43	1337											
SPIRE2	84501	mdanderson.org	37	chr16	89925692	89925692	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtcggccacccaccccccAggagggacggagccaccacg	12	19	0	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_032451	exon9	c.A1392G	p.P464P	CCCCCCAGGAGGG		51	3	0.06	25	0	0				4	0	0				G	89925692	A	G	89925692	2	3	21	1	0	0	0	0	0	0	0	1	15127	175	7	4		4	SPIRE2	16	89925692	Silent	SNP	A	TCGA-2G-AAG6-01A-11D-A42Y-10	70799505	89925692	429061	44	1338											
TRPV3	162514	broad.mit.edu	37	chr17	3438998	3438998	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcgatggcgatgttcagcGccgtctgccctgcggagcgg	16	13	2	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	TRPV3	NM_001258205	exon7	c.C653A	p.A218E	TTCAGCGCCGTCT		82	10	0.12	57	0	0		85		0	0					T	3438998	G	T	3438998	3	4	21	1	0	0	0	0	1	0	0	0	16657	1087	38	1	1767	1	TRPV3	17	3438998	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10		3438998	77756212	45	1339											
GUCY2D	3000	mdanderson.org	37	chr17	7918715	7918715	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaatgggcagcgacacgcgGcagagatcgccaacatgtca	14	11	1	1	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_000180	exon15	c.G2839A	p.A947T	CACGCGGCAGAGA		43	3	0.07	30	0	0				0	0					A	7918715	G	A	7918715	3	1	21	1	0	0	0	0	1	0	0	0	6937	1203	42	2	2893	2	GUCY2D	17	7918715	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	4479717	7918715	73276495	46	1340											
ALDH3A1	218	mdanderson.org	37	chr17	19642952	19642952	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatctcctcttgcatcaccgGggactgggggtccacgtccg	13	14	3	0	rs2228100	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001135168	exon7	c.C985T	p.P329S	TCACCGGGGACTG		80	3	0.04	57	0	0				5	0	0				A	19642952	G	A	19642952	3	1	21	1	0	0	0	0	1	0	0	0	494	1232	43	3	392	3	ALDH3A1	17	19642952	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	11724237	19642952	61552258	47	1341											
MBD1	4152	mdanderson.org	37	chr18	47800013	47800013	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgccttcccgtaaaaacacaAggtcagtgccaggcgggggc	13	13	1	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	MBD1_ENST00000457839,NS,carcinoma,0,5	MBD1_ENST00000457839	NM_001204137	exon13	c.T1442C	p.L481P	AACACAAGGTCAG		38	3	0.08	37	0	0		0	5	41	0	0				G	47800013	A	G	47800013	3	3	21	1	0	0	0	0	1	0	0	0	9391	72	3	4	664	4	MBD1	18	47800013	Missense_Mutation	SNP	A	TCGA-2G-AAG6-01A-11D-A42Y-10		47800013	30277235	48	1342											
CXXC1	30827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	47810855	47810855	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagtgacgcagggtccttGgcatcagccctctctgggtg	15	12	2	1	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001101654	exon9	c.C1110A	p.A370A	GTCCTTGGCATCA		59	5	0.08	41	0	0				45	0	0				T	47810855	G	T	47810855	2	4	21	1	0	0	0	0	0	0	0	1	4120	1335	47	3		3	CXXC1	18	47810855	Silent	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	10842	47810855	30266393	49	1343											
AZU1	566	mdanderson.org	37	chr19	830737	830737	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggccaacctcaccagcagCgtgacgatactgccactgcc	10	16	1	1	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001700	exon4	c.C390A	p.S130R	CAGCAGCGTGACG		12	2	0.17	23	0	0				1	0	0				A	830737	C	A	830737	3	1	21	1	0	0	0	0	1	0	0	0	1241	767	27	1	404	1	AZU1	19	830737	Missense_Mutation	SNP	C	TCGA-2G-AAG6-01A-11D-A42Y-10		830737	58298246	50	1344											
APBA3	9546	broad.mit.edu	37	chr19	3754245	3754245	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgcgcgtgctggtgggcGggttccgttccgacaccagc	15	14	0	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	APBA3	NM_004886	exon4	c.C710A	p.P237Q	GTGGGCGGGTTCC		174	3	0.02	192	1	0.0052083333		28		26	0	0				T	3754245	G	T	3754245	3	4	21	1	0	0	0	0	1	0	0	0	754	1116	39	1	1049	1	APBA3	19	3754245	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	2923508	3754245	55374738	51	1345											
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	13423558	13423558	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacatttttataaacatttcGgacataaagagtcctaagaa	5	6	0	2	rs372090886	alternate_allele	TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_001127221	exon12	c.C1596A	p.S532S	CATTTCGGACATA		30	11	0.37	58	0	0				1	1	1				T	13423558	G	T	13423558	2	4	21	1	0	0	0	0	0	0	0	1	2556	1103	39	1		1	CACNA1A	19	13423558	Silent	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	9669313	13423558	45705425	52	1346											
ATP13A1	57130	mdanderson.org	37	chr19	19765412	19765412	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctagagggtcacccacgaGggtgccgtcgtccagctgca	13	14	2	1	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_020410	exon13	c.C1753A	p.L585I	CCACGAGGGTGCC		48	3	0.06	50	0	0				51	0	0				T	19765412	G	T	19765412	3	4	21	1	0	0	0	0	1	0	0	0	1122	1000	35	3	1917	3	ATP13A1	19	19765412	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	6341854	19765412	39363571	53	1347											
ZNF493	284443	mdanderson.org	37	chr19	21587955	21587955	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgttgacatttagggatgtgGccatagaattctctctggag	12	7	2	2	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_145326	exon2	c.G55A	p.A19T	GATGTGGCCATAG		60	3	0.05	72	0	0				8	0	0				A	21587955	G	A	21587955	3	1	21	1	0	0	0	0	1	0	0	0	18000	1203	42	2	61	2	ZNF493	19	21587955	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	1822543	21587955	37541028	54	1348											
ATP4A	495	broad.mit.edu;mdanderson.org	37	chr19	36041807	36041807	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggatgccgtagggcaggGggaccagccaccactggaac	16	11	0	1	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	ATP4A	NM_000704	exon21	c.C3008A	p.P1003H	GGCAGGGGGACCA		87	6	0.07	89	0	0		123		0	0					T	36041807	G	T	36041807	3	4	21	1	0	0	0	0	1	0	0	0	1144	1232	43	3	107	3	ATP4A	19	36041807	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	14453852	36041807	23087176	55	1349											
PAPL	0	mdanderson.org	37	chr19	39589681	39589681	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggcccactggagtccccGtctggctgtgtttggagacc	15	12	1	1	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	FLJ16165,colon,carcinoma,0,1	FLJ16165	NM_001004318	exon4	c.G404T	p.R135L	GTCCCCGTCTGGC		45	3	0.07	36	0	0		0	1	0	0					T	39589681	G	T	39589681	3	4	21	1	0	0	0	0	1	0	0	0	11473	1145	40	1	414	1	PAPL	19	39589681	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	3547874	39589681	19539302	56	1350											
SNRPB	6628	hgsc.bcm.edu	37	chr20	2442426	2442426	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccttggtgggcgcattccCgggggagggggccctgtaag	20	10	0	0	rs371293377		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	SNRPB,right_upper_lobe,carcinoma,-1,1	SNRPB	NM_198216	exon7	c.G699A	p.P233P	CATTCCCGGGGGA		91	4	0.04	82	0	0		-1	1	314	0	0				T	2442426	C	T	2442426	2	4	21	1	0	0	0	0	0	0	0	1	14914	639	23	1		1	SNRPB	20	2442426	Silent	SNP	C	TCGA-2G-AAG6-01A-11D-A42Y-10		2442426	60583094	57	1351											
COL20A1	57642	mdanderson.org	37	chr20	61951525	61951525	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaggctggccaaggccagGggcccccggagcagttcggc	19	13	0	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_020882	exon24	c.G3051T	p.R1017S	GGCCAGGGGCCCC		24	2	0.08	26	0	0				0	0					T	61951525	G	T	61951525	3	4	21	1	0	0	0	0	1	0	0	0	3702	1223	43	3	3141	3	COL20A1	20	61951525	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10	59509099	61951525	1073995	58	1352											
TMPRSS3	64699	broad.mit.edu	37	chr21	43800255	43800255	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggccccccatcctgacGtccagcacacttttccatcg	7	18	0	1	rs200002841	alternate_allele	TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	TMPRSS3	NM_001256317	exon10	c.C1019A	p.T340K	CCTGACGTCCAGC		154	5	0.03	121	1	0.0082644628		40		2	0	0				T	43800255	G	T	43800255	3	4	21	1	0	0	0	0	1	0	0	0	16307	1145	40	1	361	1	TMPRSS3	21	43800255	Missense_Mutation	SNP	G	TCGA-2G-AAG6-01A-11D-A42Y-10		43800255	4329640	59	1353											
FAM120C	54954	hgsc.bcm.edu	37	chrX	54209318	54209318	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagggggcggcggcggcggcAgcggagggtgcagcccgggc	25	11	0	0	rs199506922		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	.	NM_017848	exon1	c.T314C	p.L105P	GGCGGCAGCGGAG		17	9	0.53	11	0	0				0	0					G	54209318	A	G	54209318	3	3	21	1	0	0	0	0	1	0	0	0	5449	188	7	4	3062	4	FAM120C	23	54209318	Missense_Mutation	SNP	A	TCGA-2G-AAG6-01A-11D-A42Y-10		54209318	101061242	60	1354											
ZC3H12B	340554	broad.mit.edu	37	chrX	64722643	64722643	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaatatccatcctggggcaAccccccagccaggccgtgcc	9	19	0	0	novel		TCGA-2G-AAG6-01A-11D-A42Y-10	TCGA-2G-AAG6-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5f410a81-1ad8-485f-ac66-c9b1106b49b9	c1a298c0-41ed-4c0b-a8c1-d93d908e7c5a	.	ZC3H12B	NM_001010888	exon5	c.A2065C	p.T689P	GGGGCAACCCCCC		153	21	0.14	65	11	0.1692307692		144		1	0	0				C	64722643	A	C	64722643	3	2	21	1	0	0	0	0	1	0	0	0	17620	43	2	4	2083	4	ZC3H12B	23	64722643	Missense_Mutation	SNP	A	TCGA-2G-AAG6-01A-11D-A42Y-10	10513325	64722643	90547917	61	1355											
PANK4	55229	hgsc.bcm.edu;bcgsc.ca	37	chr1	2453203	2453203	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttggcgactttgtgctgtAccgttgaatagtaggccagc	12	10	0	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_018216	exon2	c.T161C	p.V54A	TGCTGTACCGTTG		69	4	0.06	66	0	0				25	0	0				G	2453203	A	G	2453203	3	3	22	1	0	0	0	0	1	0	0	0	11465	391	14	4	2232	4	PANK4	1	2453203	Missense_Mutation	SNP	A	TCGA-2G-AAG7-01A-11D-A42Y-10		2453203	246797418	1	1356											
CLCN6	1185	mdanderson.org	37	chr1	11884555	11884555	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgcccagggctcttcgtggAgaaggaaggccccatgatcc	13	13	1	2	rs198400	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001286	exon8	c.A593T	p.E198V	TCGTGGAGAAGGA		66	3	0.05	54	0	0				7	0	0				T	11884555	A	T	11884555	3	4	22	1	0	0	0	0	1	0	0	0	3490	304	11	5	623	5	CLCN6	1	11884555	Missense_Mutation	SNP	A	TCGA-2G-AAG7-01A-11D-A42Y-10	9431352	11884555	237366066	2	1357											
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr1	16254718	16254718	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagagttttattcagaatgGgaaacttaccaaggagacta	10	5	1	3	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_015001	exon11	c.G1983A	p.W661X	AGAATGGGAAACT		126	36	0.29	140	0	0				8	3	0.38				A	16254718	G	A	16254718	4	1	22	1	0	0	0	0	0	1	0	0	15093	1241	43	3	2025	3	SPEN	1	16254718	Nonsense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10	4370163	16254718	232995903	3	1358											
CAMK2N1	55450	mdanderson.org	37	chr1	20811816	20811816	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaagatctggcccacgtcGccgccgtcgccgtaggggct	15	14	1	2	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_018584	exon1	c.C57T	p.G19G	CACGTCGCCGCCG		38	3	0.08	44	0	0				4	0	0				A	20811816	G	A	20811816	2	1	22	1	0	0	0	0	0	0	0	1	2621	1074	38	1		1	CAMK2N1	1	20811816	Silent	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10	4557098	20811816	228438805	4	1359											
UBXN11	91544	mdanderson.org	37	chr1	26624522	26624522	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaacttcctcgtcatgaaGgccatcagctccgagtcatg	8	14	3	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_183008	exon6	c.C231A	p.A77A	CATGAAGGCCATC		46	3	0.07	61	0	0				22	0	0				T	26624522	G	T	26624522	2	4	22	1	0	0	0	0	0	0	0	1	16972	987	35	3		3	UBXN11	1	26624522	Silent	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10	5812706	26624522	222626099	5	1360											
TCHHL1	126637	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	152057679	152057679	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctgggcctgatgcctgggCtatctgaacttgcttttgat	11	10	2	3	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001008536	exon3	c.G2479C	p.A827P	CCTGGGCTATCTG		182	9	0.05	209	0	0				0	0					G	152057679	C	G	152057679	3	3	22	1	0	0	0	0	1	0	0	0	15760	797	28	5	239	5	TCHHL1	1	152057679	Missense_Mutation	SNP	C	TCGA-2G-AAG7-01A-11D-A42Y-10	125433157	152057679	97192942	6	1361											
LCE3C	353144	mdanderson.org	37	chr1	152573341	152573341	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaagctccgggggctgtgGccccagttctgaaagtggct	14	11	2	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_178434	exon1	c.G134T	p.G45V	GCTGTGGCCCCAG		42	3	0.07	67	0	0				0	0					T	152573341	G	T	152573341	3	4	22	1	0	0	0	0	1	0	0	0	8709	1203	42	2	136	2	LCE3C	1	152573341	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10	515662	152573341	96677280	7	1362											
ARHGAP30	257106	mdanderson.org	37	chr1	161026274	161026274	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgcagtgaatgtcttggagGtaaacatcccgacgcaggtc	12	10	1	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_181720	exon3	c.C249A	p.Y83X	TTGGAGGTAAACA		73	4	0.05	67	0	0				2	0	0				T	161026274	G	T	161026274	4	4	22	1	0	0	0	0	0	1	0	0	876	1256	44	3	3096	3	ARHGAP30	1	161026274	Nonsense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10	8452933	161026274	88224347	8	1363											
MSH2	4436	mdanderson.org	37	chr2	47643474	47643474	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggctctcagtctctggctGccttgctgaataagtgtaaa	10	10	2	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	MSH2,caecum,carcinoma,-2,2	MSH2	NM_000251	exon6	c.G982T	p.A328S	CTGGCTGCCTTGC		44	3	0.07	66	0	0		-2	2	301	2	0.01				T	47643474	G	T	47643474	3	4	22	1	0	0	0	0	1	0	0	0	9918	1319	46	2	1004	2	MSH2	2	47643474	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10		47643474	195555899	9	1364											
DCTN1	1639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	74592776	74592776	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcacattggcctcacttagCtcctctccctggacaaggac	8	16	2	0	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_004082	exon25	c.G2895C	p.E965D	ACTTAGCTCCTCT		90	19	0.21	79	0	0				377	81	0.21				G	74592776	C	G	74592776	3	3	22	1	0	0	0	0	1	0	0	0	4329	796	28	5	973	5	DCTN1	2	74592776	Missense_Mutation	SNP	C	TCGA-2G-AAG7-01A-11D-A42Y-10	26949302	74592776	168606597	10	1365											
KDM3A	55818	mdanderson.org	37	chr2	86711213	86711213	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagtagacctagttaattGtaggaccaatgaaatcatca	9	6	2	2	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001146688	exon19	c.G3026T	p.C1009F	TTAATTGTAGGAC		106	5	0.05	86	0	0				56	0	0				T	86711213	G	T	86711213	3	4	22	1	0	0	0	0	1	0	0	0	8169	1377	48	3	3096	3	KDM3A	2	86711213	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10	12118437	86711213	156488160	11	1366											
CSPG5	10675	broad.mit.edu	37	chr3	47619395	47619395	+	Frame_Shift_Del	DEL	C	C	-													cttcaccagctcttcggcctCaaccgcgctgcccgcctcac					novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	CSPG5	NM_006574	exon2	c.121delG	p.E41fs	CGGCCTCAACCGC		6	2	0.33	6	0	0		46		2	0	0				-	47619395	C	-	47619395	7	5	22	1	0	1	0	1	0	0	0	0	3986	835	29	0	1514	0	CSPG5	3	47619395	Frame_Shift_Del	DEL	C	TCGA-2G-AAG7-01A-11D-A42Y-10		47619395	150403035	12	1367											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	52443757	52443757	+	Frame_Shift_Del	DEL	G	G	-													ttccacgagcagggtgaagaGgcctgggtggggcgacaaga					novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	BAP1	NM_004656	exon2	c.41delT	p.L14fs	TGAAGAGGCCTGG		51	17	0.33	42	0	0		371		25	0	0				-	52443757	G	-	52443757	7	5	22	1	0	1	0	1	0	0	0	0	1309	1000	35	0	2213	0	BAP1	3	52443757	Frame_Shift_Del	DEL	G	TCGA-2G-AAG7-01A-11D-A42Y-10	4824362	52443757	145578673	13	1368											
TP63	8626	mdanderson.org	37	chr3	189586427	189586427	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgtgcttgcccaggaagaGacaggaaggcggatgaagat	15	7	1	3	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001114979	exon8	c.G1051T	p.D351Y	GGAAGAGACAGGA		87	5	0.06	69	0	0				1	0	0				T	189586427	G	T	189586427	3	4	22	1	0	0	0	0	1	0	0	0	16452	942	33	3	1127	3	TP63	3	189586427	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10	137142670	189586427	8436003	14	1369											
GRK4	2868	mdanderson.org	37	chr4	2990561	2990561	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacattgaattcttggatGcagtggtgagcagtttatct	12	6	2	2	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001004057	exon3	c.G256T	p.A86S	TTGGATGCAGTGG		31	3	0.1	54	0	0				0	0					T	2990561	G	T	2990561	3	4	22	1	0	0	0	0	1	0	0	0	6831	1319	46	2	266	2	GRK4	4	2990561	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10		2990561	188163715	15	1370											
ZBTB49	166793	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	4304033	4304033	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaactacccccctcatttacTgcaggaatgttcagcagatg	7	12	2	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_145291	exon3	c.T470C	p.L157P	ATTTACTGCAGGA		137	11	0.08	169	0	0				4	0	0				C	4304033	T	C	4304033	3	2	22	1	0	0	0	0	1	0	0	0	17608	1580	55	4	476	4	ZBTB49	4	4304033	Missense_Mutation	SNP	T	TCGA-2G-AAG7-01A-11D-A42Y-10	1313472	4304033	186850243	16	1371											
CC2D2A	57545	bcgsc.ca	37	chr4	15539540	15539540	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agagggccaagaagaagaaaAggaaacaagcagcagaagaa	13	5	0	6	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	CC2D2A	NM_001080522	exon17	c.A1783G	p.R595G	AAGAAAAGGAAAC		59	4	0.07	87	0	0		158		7	0	0				G	15539540	A	G	15539540	3	3	22	1	0	0	0	0	1	0	0	0	2746	63	3	4	2044	4	CC2D2A	4	15539540	Missense_Mutation	SNP	A	TCGA-2G-AAG7-01A-11D-A42Y-10	11235507	15539540	175614736	17	1372											
FAT4	79633	ucsc.edu	37	chr4	126329610	126329610	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgataggttctttggtaGcagccattttagccacggat	10	7	1	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	FAT4	NM_024582	exon4	c.G5581T	p.A1861S	TTGGTAGCAGCCA		38	4	0.11	51	0	0		1752		1	0	0				T	126329610	G	T	126329610	3	4	22	1	0	0	0	0	1	0	0	0	5724	971	34	2	5595	2	FAT4	4	126329610	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10	110790070	126329610	64824666	18	1373											
GALNTL6	442117	mdanderson.org	37	chr4	172735869	172735869	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggagcccggggagcagcaGgtaagtgccacccagagaaa	16	11	0	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001034845	exon2	c.G138T	p.Q46H	GCAGCAGGTAAGT		41	3	0.07	56	0	0				1	0	0				T	172735869	G	T	172735869	3	4	22	1	0	0	0	0	1	0	0	0	6264	1014	35	3	140	3	GALNTL6	4	172735869	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10	46406259	172735869	18418407	19	1374											
NSUN2	54888	mdanderson.org	37	chr5	6623369	6623369	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagcagtggtgggatcatGctaacagcttcttgacgact	13	8	2	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_017755	exon5	c.C495A	p.S165R	GATCATGCTAACA		53	4	0.08	75	0	0				83	0	0				T	6623369	G	T	6623369	3	4	22	1	0	0	0	0	1	0	0	0	10725	1310	46	2	1868	2	NSUN2	5	6623369	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10		6623369	174291891	20	1375											
C7	730	mdanderson.org	37	chr5	40955571	40955571	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggccttagttacctagaGctggacaatcctgctggaaa	10	10	1	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_000587	exon10	c.G1176T	p.E392D	CCTAGAGCTGGAC		48	3	0.06	72	0	0				6	0	0				T	40955571	G	T	40955571	3	4	22	1	0	0	0	0	1	0	0	0	2391	962	34	2	1214	2	C7	5	40955571	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10	34332202	40955571	139959689	21	1376											
PCDHGA9	56107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140784930	140784930	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtttcctatagaagacaCccctttggttccggtgagtt	9	10	0	3	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_032089	exon1	c.C2411A	p.T804N	AAGACACCCCTTT		83	27	0.33	111	0	0				1	1	1				A	140784930	C	A	140784930	3	1	22	1	0	0	0	0	1	0	0	0	11607	507	18	3	2413	3	PCDHGA9	5	140784930	Missense_Mutation	SNP	C	TCGA-2G-AAG7-01A-11D-A42Y-10	99829359	140784930	40130330	22	1377											
NSD1	64324	mdanderson.org	37	chr5	176665473	176665473	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaagtctctccacggcctgCccttgagtctgaggaattgc	12	12	2	2	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_022455	exon7	c.C4157T	p.A1386V	GGCCTGCCCTTGA		45	3	0.07	43	0	0				42	0	0				T	176665473	C	T	176665473	3	4	22	1	0	0	0	0	1	0	0	0	10716	739	26	2	4179	2	NSD1	5	176665473	Missense_Mutation	SNP	C	TCGA-2G-AAG7-01A-11D-A42Y-10	35880543	176665473	4249787	23	1378											
HIST1H4B	8366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	26027303	26027303	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgttctccagaaacacctTgagaacgccacgagtctcct	7	15	2	2	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_003544	exon1	c.A178G	p.K60E	ACACCTTGAGAAC		112	39	0.35	128	0	0				0	0					C	26027303	T	C	26027303	3	2	22	1	0	0	0	0	1	0	0	0	7206	1821	63	4	137	4	HIST1H4B	6	26027303	Missense_Mutation	SNP	T	TCGA-2G-AAG7-01A-11D-A42Y-10		26027303	145087764	24	1379											
TEAD3	7005	mdanderson.org	37	chr6	35445113	35445113	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgtcggcggcaggggcggCtggatggggtaggctggctg	23	8	0	0	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_003214	exon8	c.G567A	p.Q189Q	GGGCGGCTGGATG		24	2	0.08	32	0	0				14	0	0				T	35445113	C	T	35445113	2	4	22	1	0	0	0	0	0	0	0	1	15798	796	28	2		2	TEAD3	6	35445113	Silent	SNP	C	TCGA-2G-AAG7-01A-11D-A42Y-10	9417810	35445113	135669954	25	1380											
TTBK1	84630	mdanderson.org	37	chr6	43221327	43221327	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccggaacctggccgacctgCgccgtagccagccgcgaggc	15	17	0	0	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_032538	exon5	c.C352T	p.R118C	GACCTGCGCCGTA		31	3	0.1	25	0	0				0	0					T	43221327	C	T	43221327	3	4	22	1	0	0	0	0	1	0	0	0	16737	768	27	1	366	1	TTBK1	6	43221327	Missense_Mutation	SNP	C	TCGA-2G-AAG7-01A-11D-A42Y-10	7776214	43221327	127893740	26	1381											
HDAC9	9734	mdanderson.org	37	chr7	18767261	18767261	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgccaagctccgctggctgCggttggcatggatggattag	16	10	0	0	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	HDAC9_ENST00000262069,caecum,carcinoma,-1,4	HDAC9_ENST00000262069	NM_178425	exon12	c.C1790T	p.A597V	TGGCTGCGGTTGG		79	4	0.05	62	0	0		-1	4	0	0					T	18767261	C	T	18767261	3	4	22	1	0	0	0	0	1	0	0	0	7054	768	27	1	1887	1	HDAC9	7	18767261	Missense_Mutation	SNP	C	TCGA-2G-AAG7-01A-11D-A42Y-10		18767261	140371402	27	1382											
ITGB8	3696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	20449503	20449503	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcttctctattaaggataaGttgattctgcaaagtgtttg	8	5	3	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_002214	exon14	c.G2193C	p.K731N	GGATAAGTTGATT		216	43	0.2	182	0	0				3	1	0.33				C	20449503	G	C	20449503	3	2	22	1	0	0	0	0	1	0	0	0	7944	1020	36	5	2247	5	ITGB8	7	20449503	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10	1682242	20449503	138689160	28	1383											
CCT6A	908	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	56119654	56119654	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggacgtgctaaggaccaaccTggggcccaagggcaccatga	14	12	0	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001762	exon1	c.T113A	p.L38Q	CCAACCTGGGGCC		127	32	0.25	62	0	0				806	180	0.22				A	56119654	T	A	56119654	3	1	22	1	0	0	0	0	1	0	0	0	2979	1580	55	5	115	5	CCT6A	7	56119654	Missense_Mutation	SNP	T	TCGA-2G-AAG7-01A-11D-A42Y-10	35670151	56119654	103019009	29	1384											
PEX1	5189	mdanderson.org	37	chr7	92143220	92143220	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttaggggtaacttccactGgagttatcctgactacggca	10	9	0	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_000466	exon6	c.C1301A	p.P434Q	TCCACTGGAGTTA		42	3	0.07	26	0	0				24	0	0				T	92143220	G	T	92143220	3	4	22	1	0	0	0	0	1	0	0	0	11782	1348	47	3	2626	3	PEX1	7	92143220	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10	36023566	92143220	66995443	30	1385											
ZNF777	27153	mdanderson.org	37	chr7	149129364	149129364	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagctcttcttgcactcggGgcacgtgtagggccgctcac	13	13	3	0	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_015694	exon6	c.C1999A	p.P667T	ACTCGGGGCACGT		40	3	0.08	39	0	0				29	0	0				T	149129364	G	T	149129364	3	4	22	1	0	0	0	0	1	0	0	0	18198	1232	43	3	500	3	ZNF777	7	149129364	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10	56986144	149129364	10009299	31	1386											
MLL3	58508	mdanderson.org	37	chr7	151843697	151843697	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cactcactgattccgctatgCgtgccactgcagagacggtc	10	14	1	2	rs151112171		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_170606	exon53	c.G14018A	p.R4673H	GCTATGCGTGCCA		51	3	0.06	35	0	0	0			34	0	0				T	151843697	C	T	151843697	3	4	22	1	0	0	0	0	1	0	0	0	9669	768	27	1	745	1	MLL3	7	151843697	Missense_Mutation	SNP	C	TCGA-2G-AAG7-01A-11D-A42Y-10	2714333	151843697	7294966	32	1387											
GSR	2936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	30560672	30560672	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcgatcaggatgtgtgggGcggtgtactttttcccactg	15	8	1	0	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001195103	exon5	c.C578T	p.A193V	TGTGGGGCGGTGT		128	37	0.29	134	0	0				70	23	0.33				A	30560672	G	A	30560672	3	1	22	1	0	0	0	0	1	0	0	0	6868	1203	42	2	1026	2	GSR	8	30560672	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10		30560672	115803350	33	1388											
FBXO18	84893	mdanderson.org	37	chr10	5951128	5951128	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaatgtcttacagatacacAgccaccactaagtgctctcc	6	13	2	2	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_032807	exon6	c.A1044G	p.T348T	ATACACAGCCACC		21	3	0.14	36	0	0				21	0	0				G	5951128	A	G	5951128	2	3	22	1	0	0	0	0	0	0	0	1	5763	175	7	4		4	FBXO18	10	5951128	Silent	SNP	A	TCGA-2G-AAG7-01A-11D-A42Y-10		5951128	129583619	34	1389											
TYSND1	219743	bcgsc.ca;mdanderson.org	37	chr10	71905784	71905784	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctagccgcacgcccagcaGcgcaaaccagcccagcgctc	10	20	0	0	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	TYSND1	NM_001040273	exon1	c.C559A	p.L187M	CCAGCAGCGCAAA		58	5	0.09	75	0	0		20		18	0	0				T	71905784	G	T	71905784	3	4	22	1	0	0	0	0	1	0	0	0	16878	962	34	2	1157	2	TYSND1	10	71905784	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10	65954656	71905784	63628963	35	1390											
BLNK	29760	ucsc.edu	37	chr10	97987208	97987208	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcagggctgggtgaaccgGcctggtttcctgctctactg	16	11	1	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	BLNK	NM_001114094	exon5	c.C319A	p.P107T	GAACCGGCCTGGT		42	4	0.1	68	0	0		46		0	0					T	97987208	G	T	97987208	3	4	22	1	0	0	0	0	1	0	0	0	1446	1203	42	2	1103	2	BLNK	10	97987208	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10	26081424	97987208	37547539	36	1391											
GPAM	57678	mdanderson.org	37	chr10	113924339	113924339	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agggaaagtagagcagacacCggtttctgactttggctttc	12	8	1	3	rs140253495	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	GPAM,NS,carcinoma,-1,1	GPAM	NM_020918	exon13	c.G1251A	p.P417P	AGACACCGGTTTC		51	3	0.06	96	0	0		-1	1	8	0	0				T	113924339	C	T	113924339	2	4	22	1	0	0	0	0	0	0	0	1	6627	639	23	1		1	GPAM	10	113924339	Silent	SNP	C	TCGA-2G-AAG7-01A-11D-A42Y-10	15937131	113924339	21610408	37	1392											
TCERG1L	256536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	133106529	133106529	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcggcctggaggcaggagcCggcctggacagagacacagc	17	12	0	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	TCERG1L,colon,carcinoma,-2,4	TCERG1L	NM_174937	exon3	c.G615A	p.P205P	AGGAGCCGGCCTG		112	48	0.43	171	0	0		-2	4	9	7	0.78				T	133106529	C	T	133106529	2	4	22	1	0	0	0	0	0	0	0	1	15745	639	23	1		1	TCERG1L	10	133106529	Silent	SNP	C	TCGA-2G-AAG7-01A-11D-A42Y-10	19182190	133106529	2428218	38	1393											
NLRP6	171389	bcgsc.ca	37	chr11	279526	279526	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agttctacggcccggagcctGccctggaggtggcccgcaag	15	14	1	0	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	NLRP6	NM_138329	exon2	c.G229T	p.A77S	GAGCCTGCCCTGG		16	4	0.25	25	0	0		4		0	0					T	279526	G	T	279526	3	4	22	1	0	0	0	0	1	0	0	0	10527	1319	46	2	235	2	NLRP6	11	279526	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10		279526	134726990	39	1394											
ATHL1	80162	mdanderson.org	37	chr11	292550	292550	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcccaacccctcagggagCcaagtttgcctgggagagtg	12	14	1	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_025092	exon6	c.C1031T	p.A344V	AGGGAGCCAAGTT		35	3	0.09	67	0	0				17	0	0				T	292550	C	T	292550	3	4	22	1	0	0	0	0	1	0	0	0	1103	739	26	2	1049	2	ATHL1	11	292550	Missense_Mutation	SNP	C	TCGA-2G-AAG7-01A-11D-A42Y-10	13024	292550	134713966	40	1395											
MICAL2	9645	mdanderson.org	37	chr11	12244987	12244987	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtatatcactaaggagctGgagcactaccctctcgagag	10	10	2	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_014632	exon12	c.G1479T	p.L493L	GGAGCTGGAGCAC		50	3	0.06	73	0	0				1	0	0				T	12244987	G	T	12244987	2	4	22	1	0	0	0	0	0	0	0	1	9617	1335	47	3		3	MICAL2	11	12244987	Silent	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10	11952437	12244987	122761529	41	1396											
RAB3IL1	5866	mdanderson.org	37	chr11	61674072	61674072	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggggctcagcagctgggGgtgaagctcgcggttgggag	22	7	1	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_013401	exon5	c.C523A	p.P175T	GCTGGGGGTGAAG		31	3	0.1	38	0	0				8	0	0				T	61674072	G	T	61674072	3	4	22	1	0	0	0	0	1	0	0	0	12988	1232	43	3	649	3	RAB3IL1	11	61674072	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10	49429085	61674072	73332444	42	1397											
SYT12	91683	mdanderson.org	37	chr11	66802170	66802170	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctatgctgcaggggccctggCcctgctgggaatcgcagctg	15	13	0	0	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_177963	exon3	c.C89A	p.A30D	CCCTGGCCCTGCT		40	3	0.08	47	0	0				2	0	0				A	66802170	C	A	66802170	3	1	22	1	0	0	0	0	1	0	0	0	15524	739	26	2	95	2	SYT12	11	66802170	Missense_Mutation	SNP	C	TCGA-2G-AAG7-01A-11D-A42Y-10	5128098	66802170	68204346	43	1398											
DLG2	1740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	83180284	83180284	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagactgcacactggttccaTataaattgtcattgtactgg	8	9	1	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001142699	exon25	c.A2579G	p.Y860C	GTTCCATATAAAT		134	48	0.36	173	0	0				5	2	0.4				C	83180284	T	C	83180284	3	2	22	1	0	0	0	0	1	0	0	0	4583	1406	49	4	364	4	DLG2	11	83180284	Missense_Mutation	SNP	T	TCGA-2G-AAG7-01A-11D-A42Y-10	16378114	83180284	51826232	44	1399											
SIK3	23387	mdanderson.org	37	chr11	116746687	116746687	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cgatcacacagcaggctgtaGattgcactatagtgatcata	9	9	2	2	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_025164	exon9	c.C960A	p.I320I	GCTGTAGATTGCA		17	2	0.12	47	0	0				8	0	0				T	116746687	G	T	116746687	2	4	22	1	0	0	0	0	0	0	0	1	14373	932	33	3		3	SIK3	11	116746687	Silent	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10	33566403	116746687	18259829	45	1400											
NCKAP5L	57701	mdanderson.org	37	chr12	50190598	50190598	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtggtccccattgagtgGgcctgcagccccggccagga	16	13	0	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001037806	exon8	c.C1045A	p.P349T	TGAGTGGGCCTGC		33	3	0.09	42	0	0				10	0	0				T	50190598	G	T	50190598	3	4	22	1	0	0	0	0	1	0	0	0	10270	1232	43	3	2983	3	NCKAP5L	12	50190598	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10		50190598	83661297	46	1401											
FOXN4	121643	broad.mit.edu	37	chr12	109719430	109719430	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggacctggtggtgcagggggActgactgcagggacagggtc	20	8	0	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	FOXN4	NM_213596	exon9	c.T1076C	p.V359A	AGGGGGACTGACT		117	6	0.05	118	1	0.0084745763		74		0	0					G	109719430	A	G	109719430	3	3	22	1	0	0	0	0	1	0	0	0	6055	275	10	4	485	4	FOXN4	12	109719430	Missense_Mutation	SNP	A	TCGA-2G-AAG7-01A-11D-A42Y-10	59528832	109719430	24132465	47	1402											
NOC4L	79050	mdanderson.org	37	chr12	132632512	132632512	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaccgtctccagcttctatGtgaagcgggcgggtgagtgt	14	11	2	2	rs149306359	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_024078	exon6	c.G691T	p.V231L	TTCTATGTGAAGC		48	3	0.06	56	1	0.0178571429				89	0	0				T	132632512	G	T	132632512	3	4	22	1	0	0	0	0	1	0	0	0	10561	1377	48	3	713	3	NOC4L	12	132632512	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10	22913082	132632512	1219383	48	1403											
TPTE2	93492	broad.mit.edu;mdanderson.org	37	chr13	20025336	20025336	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tagactcgatagtggtttcgAtgtttcttatctagaaaccg	9	7	2	2	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	TPTE2	NM_199254	exon12	c.T771C	p.H257H	GTTTCGATGTTTC		51	8	0.16	55	0	0		225		0	0					G	20025336	A	G	20025336	2	3	22	1	0	0	0	0	0	0	0	1	16491	330	12	4		4	TPTE2	13	20025336	Silent	SNP	A	TCGA-2G-AAG7-01A-11D-A42Y-10		20025336	95144542	49	1404											
HMGB1	3146	broad.mit.edu	37	chr13	31035512	31035512	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acttattcatcatcatcatcTtcttcttcatcttcatcttc	0	13	11	0	rs79036453		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	HMGB1	NM_002128	exon5	c.A630T	p.E210D	ATCATCTTCTTCT		40	3	0.08	58	0	0		21		752	3	0				A	31035512	T	A	31035512	3	1	22	1	0	0	0	0	1	0	0	0	7265	1606	56	5	21	5	HMGB1	13	31035512	Missense_Mutation	SNP	T	TCGA-2G-AAG7-01A-11D-A42Y-10	11010176	31035512	84134366	50	1405											
TECPR2	9895	mdanderson.org	37	chr14	102963955	102963955	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caccaggaccgtgtgggcccGctgtccaaacggagacctcg	13	15	0	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_014844	exon19	c.G3980T	p.R1327L	GGGCCCGCTGTCC		47	3	0.06	46	0	0				14	0	0				T	102963955	G	T	102963955	3	4	22	1	0	0	0	0	1	0	0	0	15802	1087	38	1	4065	1	TECPR2	14	102963955	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10		102963955	4385585	51	1406											
ZNF646	9726	mdanderson.org	37	chr16	31087950	31087950	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacacatgctcctgagggccGccgcaggcacaggcccccac	12	18	0	1	rs143373931	bycluster;byfrequency	TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	ZNF646,right_lower_lobe,carcinoma,0,1	ZNF646	NM_014699	exon2	c.G305T	p.R102L	AGGGCCGCCGCAG		31	3	0.1	22	0	0		0	1	11	0	0				T	31087950	G	T	31087950	3	4	22	1	0	0	0	0	1	0	0	0	18118	1087	38	1	307	1	ZNF646	16	31087950	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10		31087950	59266803	52	1407											
COG8	84342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	69368744	69368744	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaacaggagccaactgacCccggaaatcagctcccaccc	8	16	1	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_032382	exon3	c.G1093T	p.G365C	ACTGACCCCGGAA		76	16	0.21	77	0	0				42	7	0.17				A	69368744	C	A	69368744	3	1	22	1	0	0	0	0	1	0	0	0	3687	623	22	3	757	3	COG8	16	69368744	Missense_Mutation	SNP	C	TCGA-2G-AAG7-01A-11D-A42Y-10	38280794	69368744	20986009	53	1408											
DBNDD1	79007	mdanderson.org	37	chr16	90075739	90075739	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggtgctggtactgggatgCccccgacctcctcctccaca	10	18	0	0	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_024043	exon2	c.G191A	p.G64D	GGGATGCCCCCGA		40	3	0.08	41	0	0				22	0	0				T	90075739	C	T	90075739	3	4	22	1	0	0	0	0	1	0	0	0	4277	739	26	2	357	2	DBNDD1	16	90075739	Missense_Mutation	SNP	C	TCGA-2G-AAG7-01A-11D-A42Y-10	20706995	90075739	279014	54	1409											
STAC2	342667	bcgsc.ca	37	chr17	37381749	37381749	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gttctccttctcgctcatctCggtcatggttcggggagagg	13	11	5	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	STAC2	NM_198993	exon1	c.G7A	p.E3K	TCATCTCGGTCAT		39	4	0.1	32	0	0		47		1	0	0				T	37381749	C	T	37381749	3	4	22	1	0	0	0	0	1	0	0	0	15295	893	31	1	1272	1	STAC2	17	37381749	Missense_Mutation	SNP	C	TCGA-2G-AAG7-01A-11D-A42Y-10		37381749	43813461	55	1410											
USP32	84669	mdanderson.org	37	chr17	58303401	58303401	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaataggtcatatttaccGctgccagcagtttctgaggc	12	9	2	1	rs76017156	bycluster;byfrequency;by1000genomes	TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_032582	exon13	c.C1431T	p.S477S	TTTACCGCTGCCA		56	3	0.05	61	0	0	0.002			54	0	0				A	58303401	G	A	58303401	2	1	22	1	0	0	0	0	0	0	0	1	17122	1101	38	1		1	USP32	17	58303401	Silent	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10	20921652	58303401	22891809	56	1411											
BPTF	2186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr17	65890193	65890193	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agatgtgtagcaaacccagaGaatttgcattggctttagcc	10	8	0	2	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	BPTF_ENST00000335221,caecum,carcinoma,0,4	BPTF_ENST00000335221	NM_004459	exon9	c.G2833T	p.E945X	CCCAGAGAATTTG		82	23	0.28	59	0	0		0	4	21	3	0.14				T	65890193	G	T	65890193	4	4	22	1	0	0	0	0	0	1	0	0	1497	943	33	3	2867	3	BPTF	17	65890193	Nonsense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10	7586792	65890193	15305017	57	1412											
ARRDC5	645432	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	4891239	4891239	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgatctcaccgtcctgcGtgctgctgctcacggacagc	11	15	2	1	rs2297506	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	ARRDC5	NM_001080523	exon3	c.C848A	p.T283K	TCCTGCGTGCTGC		42	4	0.1	56	0	0		19		0	0					T	4891239	G	T	4891239	3	4	22	1	0	0	0	0	1	0	0	0	985	1145	40	1	184	1	ARRDC5	19	4891239	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10		4891239	54237744	58	1413											
ZNF823	55552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	11833770	11833770	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctttcccacacaacttacaTttataaggtccatctccatg	4	13	1	0	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	ZNF823_ENST00000341191,colon,carcinoma,-1,2	ZNF823_ENST00000341191	NM_001080493	exon4	c.A579G	p.K193K	CTTACATTTATAA		106	33	0.31	108	0	0		-1	2	6	4	0.67				C	11833770	T	C	11833770	2	2	22	1	0	0	0	0	0	0	0	1	18225	1490	52	4		4	ZNF823	19	11833770	Silent	SNP	T	TCGA-2G-AAG7-01A-11D-A42Y-10	6942531	11833770	47295213	59	1414											
CEBPA	1050	broad.mit.edu;mdanderson.org	37	chr19	33792544	33792544	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcgcgcggaggtcggggtgCgcggcgcccagccccttgag	18	15	0	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	CEBPA	NM_004364	exon1	c.G777T	p.A259A	GGGGTGCGCGGCG		11	8	0.73	15	0	0		986		1	0	0				A	33792544	C	A	33792544	2	1	22	1	0	0	0	0	0	0	0	1	3221	755	27	1		1	CEBPA	19	33792544	Silent	SNP	C	TCGA-2G-AAG7-01A-11D-A42Y-10	21958774	33792544	25336439	60	1415											
ZNF30	90075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	35434283	35434283	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agactcaaagcctgttcaacAtgaaagaatacatagtagtg	8	7	2	3	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001099438	exon5	c.A416G	p.H139R	TTCAACATGAAAG		136	38	0.28	157	0	0				2	1	0.5				G	35434283	A	G	35434283	3	3	22	1	0	0	0	0	1	0	0	0	17886	217	8	4	430	4	ZNF30	19	35434283	Missense_Mutation	SNP	A	TCGA-2G-AAG7-01A-11D-A42Y-10	1641739	35434283	23694700	61	1416											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	39057585	39057585	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggagctcccgccagagcCagagcccgagccggaaccag	15	15	0	2	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	RYR1,caecum,carcinoma,+1,1	RYR1	NM_000540	exon92	c.C13472T	p.P4491L	CAGAGCCAGAGCC		42	12	0.29	35	0	0		1	1	38	6	0.16				T	39057585	C	T	39057585	3	4	22	1	0	0	0	0	1	0	0	0	13819	594	21	3	13838	3	RYR1	19	39057585	Missense_Mutation	SNP	C	TCGA-2G-AAG7-01A-11D-A42Y-10	3623302	39057585	20071398	62	1417											
EGLN2	112398	mdanderson.org	37	chr19	41306600	41306600	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtggagagttacctgccCtgtcccctgctcccctccta	10	16	0	1	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_080732	exon2	c.C123A	p.P41P	CCTGCCCTGTCCC		37	3	0.08	45	0	0				79	0	0				A	41306600	C	A	41306600	2	1	22	1	0	0	0	0	0	0	0	1	4995	668	24	3		3	EGLN2	19	41306600	Silent	SNP	C	TCGA-2G-AAG7-01A-11D-A42Y-10	2249015	41306600	17822383	63	1418											
FLT3LG	2323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	49979435	49979435	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcaagattacccagtcaccGtggcctccaacctgcaggac	8	15	2	1	rs367551792	alternate_allele	TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001204503	exon3	c.G178C	p.V60L	GTCACCGTGGCCT		49	13	0.27	45	0	0				4	0	0				C	49979435	G	C	49979435	3	2	22	1	0	0	0	0	1	0	0	0	5975	1145	40	5	188	5	FLT3LG	19	49979435	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10	8672835	49979435	9149548	64	1419											
STAU1	6780	mdanderson.org	37	chr20	47734337	47734337	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gaatccctggactctggaaaGatagtccagttgctcagagg	12	9	2	2	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_017453	exon11	c.C1486A	p.L496I	TGGAAAGATAGTC		20	2	0.1	31	0	0				143	0	0				T	47734337	G	T	47734337	3	4	22	1	0	0	0	0	1	0	0	0	15327	942	33	3	263	3	STAU1	20	47734337	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10		47734337	15291183	65	1420											
TMEM211	255349	mdanderson.org	37	chr22	25334150	25334150	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acccctggcattggaacactGcttctccttgggcacagccc	9	16	1	0	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001001663	exon2	c.C93A	p.S31R	AACACTGCTTCTC		36	3	0.08	52	0	0				0	0					T	25334150	G	T	25334150	3	4	22	1	0	0	0	0	1	0	0	0	16194	1310	46	2	304	2	TMEM211	22	25334150	Missense_Mutation	SNP	G	TCGA-2G-AAG7-01A-11D-A42Y-10		25334150	25970416	66	1421											
GMEB1	10691	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	29016676	29016676	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtagaaactcacacgatAcacaaaattgaagaagggat	9	7	1	3	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	GMEB1	NM_006582	exon3	c.A219G	p.I73M	CACGATACACAAA		127	12	0.09	147	0	0		28		21	5	0.24				G	29016676	A	G	29016676	3	3	23	1	0	0	0	0	1	0	0	0	6528	381	14	4	225	4	GMEB1	1	29016676	Missense_Mutation	SNP	A	TCGA-2G-AAG8-01A-31D-A42Y-10		29016676	220233945	1	1422											
COL16A1	1307	mdanderson.org	37	chr1	32156172	32156172	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcctgggatccccgagctGccctgtggtcagaagaaagg	13	11	1	2	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_001856	exon21	c.C1440T	p.G480G	CGAGCTGCCCTGT		50	3	0.06	75	0	0				28	0	0				A	32156172	G	A	32156172	2	1	23	1	0	0	0	0	0	0	0	1	3696	1306	46	2		2	COL16A1	1	32156172	Silent	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10	3139496	32156172	217094449	2	1423											
SLC35F3	148641	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	234040876	234040876	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caggggcaagagcattgccgTgtgagtagcgccccgggcgt	17	11	0	2	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_173508	exon1	c.T53C	p.V18A	TTGCCGTGTGAGT		35	8	0.23	40	0	0				0	0					C	234040876	T	C	234040876	3	2	23	1	0	0	0	0	1	0	0	0	14644	1710	59	4	55	4	SLC35F3	1	234040876	Missense_Mutation	SNP	T	TCGA-2G-AAG8-01A-31D-A42Y-10	201884704	234040876	15209745	3	1424											
CCDC115	84317	mdanderson.org	37	chr2	131098600	131098600	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtcttagtggggcccttgCgcctccgcagacctgaggaa	15	12	1	2	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	CCDC115,NS,carcinoma,0,1	CCDC115	NM_032357	exon4	c.G311A	p.R104H	CCCTTGCGCCTCC		24	3	0.13	35	0	0		0	1	163	1	0.01				T	131098600	C	T	131098600	3	4	23	1	0	0	0	0	1	0	0	0	2770	768	27	1	239	1	CCDC115	2	131098600	Missense_Mutation	SNP	C	TCGA-2G-AAG8-01A-31D-A42Y-10		131098600	112100773	4	1425											
IFIH1	64135	broad.mit.edu	37	chr2	163174668	163174668	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcatgttcccggaggtggcGactgtcctctgaatctgctc	12	12	2	1	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	IFIH1	NM_022168	exon1	c.C150A	p.V50V	GGTGGCGACTGTC		95	3	0.03	86	0	0		102		4	0	0				T	163174668	G	T	163174668	2	4	23	1	0	0	0	0	0	0	0	1	7563	1045	37	1		1	IFIH1	2	163174668	Silent	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10	32076068	163174668	80024705	5	1426											
KCNH7	90134	mdanderson.org	37	chr2	163253438	163253438	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaagatgaaccatttctcCaaatatatcattttttccta	2	8	2	2	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	KCNH7,neck,malignant_melanoma,0,1	KCNH7	NM_033272	exon11	c.G2425T	p.G809X	TTTCTCCAAATAT		50	3	0.06	53	0	0		0	1	0	0					A	163253438	C	A	163253438	4	1	23	1	0	0	0	0	0	1	0	0	8080	603	21	3	1189	3	KCNH7	2	163253438	Nonsense_Mutation	SNP	C	TCGA-2G-AAG8-01A-31D-A42Y-10	78770	163253438	79945935	6	1427											
ESPNL	339768	mdanderson.org	37	chr2	239039967	239039967	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgctggagtgcgacctgcCggcggaggagcggaagctgc	19	11	0	0	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_194312	exon9	c.C2612T	p.P871L	ACCTGCCGGCGGA		39	3	0.08	72	0	0				0	0					T	239039967	C	T	239039967	3	4	23	1	0	0	0	0	1	0	0	0	5283	652	23	1	2646	1	ESPNL	2	239039967	Missense_Mutation	SNP	C	TCGA-2G-AAG8-01A-31D-A42Y-10	75786529	239039967	4159406	7	1428											
ATG4B	23192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	242610198	242610198	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgccagcaagtcaaaaagGtttgtagccgccccacaccc	10	14	1	0	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_013325	exon11	c.1014+1G>T	.	AAAAAGGTTTGTA		72	14	0.19	61	0	0				7	3	0.43				T	242610198	G	T	242610198	5	4	23	1	0	0	0	0	0	0	1	0	1096	1275	44	3	1057	3	ATG4B	2	242610198	Splice_Site	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10	3570231	242610198	589175	8	1429											
CAPN7	23473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	15282061	15282061	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgaaaatgatgtaaaaaacTggactccagagttgcaaaag	10	5	0	3	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_014296	exon13	c.T1489C	p.W497R	AAAAACTGGACTC		69	12	0.17	81	0	0				13	2	0.15				C	15282061	T	C	15282061	3	2	23	1	0	0	0	0	1	0	0	0	2649	1580	55	4	1539	4	CAPN7	3	15282061	Missense_Mutation	SNP	T	TCGA-2G-AAG8-01A-31D-A42Y-10		15282061	182740369	9	1430											
DHX30	22907	broad.mit.edu	37	chr3	47890473	47890473	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctttgtgcgggctgtcgccGgctgggaggaggtgctgcgt	19	10	0	0	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	DHX30	NM_138615	exon18	c.G2833T	p.G945C	GTCGCCGGCTGGG		60	3	0.05	62	0	0		101		202	0	0				T	47890473	G	T	47890473	3	4	23	1	0	0	0	0	1	0	0	0	4532	1116	39	1	2906	1	DHX30	3	47890473	Missense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10	32608412	47890473	150131957	10	1431											
MST1R	4486	mdanderson.org	37	chr3	49940449	49940449	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtccagtgaggatgccacGtagaaataggaggcctggcc	15	10	0	2	rs200307089	alternate_allele	TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_001244937	exon1	c.C594A	p.Y198X	TGCCACGTAGAAA		14	2	0.14	33	0	0				1	0	0				T	49940449	G	T	49940449	4	4	23	1	0	0	0	0	0	1	0	0	9938	1140	40	1	3688	1	MST1R	3	49940449	Nonsense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10	2049976	49940449	148081981	11	1432											
RASA2	5922	mdanderson.org	37	chr3	141205997	141205997	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgagtgcgactgcagagccCgaggccggggaccaggacag	18	12	0	1	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_006506	exon1	c.C72T	p.P24P	AGAGCCCGAGGCC		50	3	0.06	69	0	0				0	0					T	141205997	C	T	141205997	2	4	23	1	0	0	0	0	0	0	0	1	13112	639	23	1		1	RASA2	3	141205997	Silent	SNP	C	TCGA-2G-AAG8-01A-31D-A42Y-10	91265548	141205997	56816433	12	1433											
DDX60	55601	broad.mit.edu	37	chr4	169176947	169176947	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttatcagctttgggaggccTttttgtctcctgctttttct	8	9	3	0	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	DDX60	NM_017631	exon26	c.A3472G	p.R1158G	GAGGCCTTTTTGT		87	4	0.05	92	0	0		304		13	0	0				C	169176947	T	C	169176947	3	2	23	1	0	0	0	0	1	0	0	0	4401	1608	56	4	1718	4	DDX60	4	169176947	Missense_Mutation	SNP	T	TCGA-2G-AAG8-01A-31D-A42Y-10		169176947	21977329	13	1434											
RAPGEF6	51735	broad.mit.edu;mdanderson.org	37	chr5	130799747	130799747	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tattcaccttccattgagttGaattctatcagctaatttgg	6	8	3	2	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	RAPGEF6_ENST00000509018,face,carcinoma,0,2	RAPGEF6	NM_001164387	exon19	c.C2482A	p.Q828K	TGAGTTGAATTCT		79	5	0.06	101	0	0		361	2	1	0	0				T	130799747	G	T	130799747	3	4	23	1	0	0	0	0	1	0	0	0	13099	1299	45	3	2849	3	RAPGEF6	5	130799747	Missense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10		130799747	50115513	14	1435											
HIST1H4G	8369	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	26246971	26246971	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catggcggtgaccgtcttgcGcttggcgtgctccgtgttgg	16	11	1	1	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_003547	exon1	c.C235T	p.R79C	TCTTGCGCTTGGC		92	5	0.05	137	0	0				0	0					A	26246971	G	A	26246971	3	1	23	1	0	0	0	0	1	0	0	0	7211	1087	38	1	65	1	HIST1H4G	6	26246971	Missense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10		26246971	144868096	15	1436											
KCTD20	222658	bcgsc.ca;mdanderson.org	37	chr6	36446943	36446943	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aacttcactcggcccaatgaGaagggagagtatgagattgc	12	8	1	3	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	KCTD20	NM_173562	exon4	c.G480T	p.E160D	CAATGAGAAGGGA		81	5	0.06	83	1	0.0120481928		37		14	0	0				T	36446943	G	T	36446943	3	4	23	1	0	0	0	0	1	0	0	0	8151	933	33	3	490	3	KCTD20	6	36446943	Missense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10	10199972	36446943	134668124	16	1437											
C6orf170	221322	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	121562693	121562693	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagccaaattttttatgcctGctgacctaacagcataaata	5	9	0	1	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	C6orf170	NM_152730	exon19	c.C2163A	p.S721R	ATGCCTGCTGACC		62	5	0.08	58	0	0		146		1	0	0				T	121562693	G	T	121562693	3	4	23	1	0	0	0	0	1	0	0	0	2358	1310	46	2	1666	2	C6orf170	6	121562693	Missense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10	85115750	121562693	49552374	17	1438											
PDE10A	10846	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	165809921	165809921	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	catcgttacccggtaaatgcActctgagtggcgaattctat	9	10	2	1	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	PDE10A	NM_001130690	exon14	c.T1306G	p.C436G	AAATGCACTCTGA		120	16	0.13	125	6	0.048		154		0	0					C	165809921	A	C	165809921	3	2	23	1	0	0	0	0	1	0	0	0	11676	159	6	4	1099	4	PDE10A	6	165809921	Missense_Mutation	SNP	A	TCGA-2G-AAG8-01A-31D-A42Y-10	44247228	165809921	5305146	18	1439											
CYTH3	9265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	6204910	6204910	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gaggccccactcacttgatgGatttcatccactcctccttc	6	16	2	1	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_004227	exon12	c.C1121G	p.S374C	TTGATGGATTTCA		204	24	0.12	197	0	0				54	11	0.2				C	6204910	G	C	6204910	3	2	23	1	0	0	0	0	1	0	0	0	4228	1174	41	5	86	5	CYTH3	7	6204910	Missense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10		6204910	152933753	19	1440											
FERD3L	222894	hgsc.bcm.edu	37	chr7	19184768	19184768	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcctcctcctcttctccgTccccctggtccacttcgcac	4	22	2	0	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	FERD3L,NS,carcinoma,+1,1	FERD3L	NM_152898	exon1	c.A218G	p.D73G	TCTCCGTCCCCCT		74	3	0.04	77	0	0		1	1	0	0					C	19184768	T	C	19184768	3	2	23	1	0	0	0	0	1	0	0	0	5848	1667	58	4	286	4	FERD3L	7	19184768	Missense_Mutation	SNP	T	TCGA-2G-AAG8-01A-31D-A42Y-10	12979858	19184768	139953895	20	1441											
IFRD1	3475	broad.mit.edu;bcgsc.ca	37	chr7	112115496	112115497	+	Frame_Shift_Del	DEL	CT	CT	-													tcattttagcatttatataaCtctgcagccttcaaagctcg					novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	CT	CT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	IFRD1	NM_001007245	exon13	c.1278_1279del	p.426_427del	ATATAACTCTGCA		41	9	0.22	46	0	0		46		287	0	0				-	112115497	CT	-	112115496	7	5	23	1	0	1	0	1	0	0	0	0	7596	564	20	0	1324	0	IFRD1	7	112115496	Frame_Shift_Del	DEL	CT	TCGA-2G-AAG8-01A-31D-A42Y-10	92930728	112115496	47023167	21	1442											
CCDC136	64753	hgsc.bcm.edu	37	chr7	128441311	128441311	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagcgaacttaaggaaataGaacaggaattgcatttggcc	10	6	0	1	rs200870724	by1000genomes;alternate_allele	TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	NAG6,NS,carcinoma,0,3	NAG6	NM_001201372	exon5	c.G568T	p.E190X	GAAATAGAACAGG		75	3	0.04	45	0	0		0	3	16	0	0				T	128441311	G	T	128441311	4	4	23	1	0	0	0	0	0	1	0	0	2788	943	33	3	432	3	CCDC136	7	128441311	Nonsense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10	16325815	128441311	30697352	22	1443											
CHPF2	54480	mdanderson.org	37	chr7	150935131	150935131	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtaccctgggacgaggctGgcctggctcgctgtgcgagc	17	13	0	0	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_019015	exon4	c.G1683T	p.L561L	GAGGCTGGCCTGG		49	3	0.06	46	0	0				200	0	0				T	150935131	G	T	150935131	2	4	23	1	0	0	0	0	0	0	0	1	3391	1335	47	3		3	CHPF2	7	150935131	Silent	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10	22493820	150935131	8203532	23	1444											
MYOM2	9172	mdanderson.org	37	chr8	2000361	2000361	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagccagacgtccctgggaGgaaccatctgcagggtctgt	13	13	2	1	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_003970	exon3	c.G193T	p.G65X	CTGGGAGGAACCA		52	3	0.06	83	0	0				0	0					T	2000361	G	T	2000361	4	4	23	1	0	0	0	0	0	1	0	0	10139	1001	35	3	199	3	MYOM2	8	2000361	Nonsense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10		2000361	144363661	24	1445											
COL14A1	7373	mdanderson.org	37	chr8	121327809	121327809	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagagaaaggagatactgGccttccaggtccacaggtat	13	8	0	2	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_021110	exon39	c.G4589T	p.G1530V	ATACTGGCCTTCC		41	3	0.07	66	0	0				17	0	0				T	121327809	G	T	121327809	3	4	23	1	0	0	0	0	1	0	0	0	3694	1203	42	2	4739	2	COL14A1	8	121327809	Missense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10	119327448	121327809	25036213	25	1446											
PSCA	8000	mdanderson.org	37	chr8	143762760	143762760	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaggcactgccctgctgtGctactcctgcaaagcccagg	10	16	0	0	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_005672	exon2	c.G41T	p.C14F	TGCTGTGCTACTC		43	3	0.07	59	0	0				0	0					T	143762760	G	T	143762760	3	4	23	1	0	0	0	0	1	0	0	0	12693	1319	46	2	47	2	PSCA	8	143762760	Missense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10	22434951	143762760	2601262	26	1447											
WNK2	65268	mdanderson.org	37	chr9	95997149	95997149	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actacgatgagtccgtggacGtctatgcctttgggatgtgc	13	9	1	1	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_006648	exon4	c.G1135T	p.V379F	GTGGACGTCTATG		69	4	0.06	90	0	0				6	0	0				T	95997149	G	T	95997149	3	4	23	1	0	0	0	0	1	0	0	0	17437	1145	40	1	1149	1	WNK2	9	95997149	Missense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10		95997149	45216282	27	1448											
HSPA5	3309	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	127999044	127999044	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccattcaatcttttcttctaCagctttttccatggtctcct	3	13	5	0	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	HSPA5	NM_005347	exon8	c.G1792A	p.V598I	CTTCTACAGCTTT		125	13	0.1	140	1	0.0071428571		41		5985	1219	0.2				T	127999044	C	T	127999044	3	4	23	1	0	0	0	0	1	0	0	0	7456	478	17	3	176	3	HSPA5	9	127999044	Missense_Mutation	SNP	C	TCGA-2G-AAG8-01A-31D-A42Y-10	32001895	127999044	13214387	28	1449											
GAPVD1	26130	broad.mit.edu	37	chr9	128099583	128099583	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccaatcctggaaggagctGtgggaggaaatgaggccagg	16	9	0	1	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	GAPVD1	NM_015635	exon16	c.G2671C	p.V891L	GGAGCTGTGGGAG		84	3	0.04	108	0	0		124		19	0	0				C	128099583	G	C	128099583	3	2	23	1	0	0	0	0	1	0	0	0	6278	1377	48	5	2729	5	GAPVD1	9	128099583	Missense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10	100539	128099583	13113848	29	1450											
ABCA2	20	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr9	139906169	139906169	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tcgaacacaaacaggatgatGacacagcaggtagcggggac	13	9	0	2	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_212533	exon36	c.C5658T	p.V1886V	GATGATGACACAG		63	8	0.13	69	0	0				21	1	0.05				A	139906169	G	A	139906169	2	1	23	1	0	0	0	0	0	0	0	1	32	1277	45	3		3	ABCA2	9	139906169	Silent	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10	11806586	139906169	1307262	30	1451											
C10orf114	399726	mdanderson.org	37	chr10	21784697	21784697	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcggatggagccagggctGcgggttgcgcgcgggctggg	23	10	0	0	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_001010911	exon2	c.C243A	p.R81R	AGGGCTGCGGGTT		21	2	0.1	26	0	0				0	0					T	21784697	G	T	21784697	2	4	23	1	0	0	0	0	0	0	0	1	1589	1306	46	2		2	C10orf114	10	21784697	Silent	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10		21784697	113750050	31	1452											
KCNQ1	3784	mdanderson.org	37	chr11	2591884	2591884	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgctggtggtgttcttcggGacggagtacgtggtccgcct	17	9	1	0	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_000218	exon3	c.G504T	p.G168G	CTTCGGGACGGAG		34	3	0.09	30	0	0				4	0	0				T	2591884	G	T	2591884	2	4	23	1	0	0	0	0	0	0	0	1	8125	1161	41	3		3	KCNQ1	11	2591884	Silent	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10		2591884	132414632	32	1453											
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	46898070	46898070	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcaaggttctgccacacCaacactttccgcatggaccc	7	16	2	0	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_002334	exon25	c.G3483A	p.L1161L	CCACACCAACACT		69	14	0.2	101	0	0				33	8	0.24				T	46898070	C	T	46898070	2	4	23	1	0	0	0	0	0	0	0	1	9003	593	21	3		3	LRP4	11	46898070	Silent	SNP	C	TCGA-2G-AAG8-01A-31D-A42Y-10	44306186	46898070	88108446	33	1454											
EHBP1L1	254102	mdanderson.org	37	chr11	65349378	65349378	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	taagaggtcaggagtcagagCtggggaggctgaagagagtt	18	4	2	4	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_001099409	exon9	c.C1235A	p.A412D	TCAGAGCTGGGGA		37	3	0.08	52	0	0				23	0	0				A	65349378	C	A	65349378	3	1	23	1	0	0	0	0	1	0	0	0	5002	797	28	2	1269	2	EHBP1L1	11	65349378	Missense_Mutation	SNP	C	TCGA-2G-AAG8-01A-31D-A42Y-10	18451308	65349378	69657138	34	1455											
ARAP1	116985	mdanderson.org	37	chr11	72425304	72425304	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gggtggacaggggctcctcaGactgtggctggggaggggat	21	7	1	1	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_001040118	exon4	c.C572A	p.S191Y	TCCTCAGACTGTG		29	3	0.1	33	0	0				20	0	0				T	72425304	G	T	72425304	3	4	23	1	0	0	0	0	1	0	0	0	835	942	33	3	3908	3	ARAP1	11	72425304	Missense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10	7075926	72425304	62581212	35	1456											
CEP164	22897	mdanderson.org	37	chr11	117267810	117267810	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caactctcctgctccagcctGtcctcccacaatgtctggca	6	18	2	0	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_001271933	exon26	c.G3291T	p.L1097L	CAGCCTGTCCTCC		45	3	0.07	69	0	0				18	0	0				T	117267810	G	T	117267810	2	4	23	1	0	0	0	0	0	0	0	1	3271	1364	48	3		3	CEP164	11	117267810	Silent	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10	44842506	117267810	17738706	36	1457											
TRIM29	23650	mdanderson.org	37	chr11	119998158	119998158	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atgatcaccttcacttggtcCacagcatcctgctcccgctg	7	16	2	1	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_012101	exon3	c.G1020T	p.V340V	TTGGTCCACAGCA		47	3	0.06	96	0	0				2	0	0				A	119998158	C	A	119998158	2	1	23	1	0	0	0	0	0	0	0	1	16563	581	21	3		3	TRIM29	11	119998158	Silent	SNP	C	TCGA-2G-AAG8-01A-31D-A42Y-10	2730348	119998158	15008358	37	1458											
ERC1	23085	broad.mit.edu	37	chr12	1292505	1292505	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcatcctcaggactgaaaaAggactcacggcttaagacac	10	11	2	2	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	ERC1	NM_178040	exon11	c.A2075G	p.K692R	TGAAAAAGGACTC		531	4	0.01	294	1	0.0034013605		95		24	0	0				G	1292505	A	G	1292505	3	3	23	1	0	0	0	0	1	0	0	0	5238	72	3	4	2113	4	ERC1	12	1292505	Missense_Mutation	SNP	A	TCGA-2G-AAG8-01A-31D-A42Y-10		1292505	132559390	38	1459											
PLEKHG6	55200	mdanderson.org	37	chr12	6437022	6437022	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagggggccgaggagccccGggacagcaggccacggaagc	19	12	0	1	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_001144856	exon15	c.G2273T	p.R758L	AGCCCCGGGACAG		39	3	0.08	22	0	0				130	0	0				T	6437022	G	T	6437022	3	4	23	1	0	0	0	0	1	0	0	0	12121	1116	39	1	2373	1	PLEKHG6	12	6437022	Missense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10	5144517	6437022	127414873	39	1460											
RBP5	0	broad.mit.edu	37	chr12	7281645	7281674	+	RNA	DEL	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	-													gttgcgcctgaccttggcttTtcctgaggaaggaacctgga					novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	RBP5	.	.	.	.	TGGCTTTTCCTGA		11	4	0.36	5	0	0		20		0	0					-	7281674	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	-	7281645	6	5	23	0	1	1	0	1	0	0	0	0	13210	1856	64	0		0	RBP5	12	7281645	RNA	DEL	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TCGA-2G-AAG8-01A-31D-A42Y-10	844623	7281645	126570250	40	1461											
DUSP16	80824	broad.mit.edu	37	chr12	12630662	12630662	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtcctctaacagcgacGgctgcacgctgggcacgctg	14	14	1	0	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	DUSP16,NS,carcinoma,0,1	DUSP16	NM_030640	exon7	c.C1103A	p.P368Q	AGCGACGGCTGCA		130	3	0.02	71	0	0		64	1	121	0	0				T	12630662	G	T	12630662	3	4	23	1	0	0	0	0	1	0	0	0	4842	1116	39	1	898	1	DUSP16	12	12630662	Missense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10	5349017	12630662	121221233	41	1462											
CASC5	57082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	40933157	40933157	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagacctgatgttaagtcaAtatgtttaccgacccaagat	8	8	1	3	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_170589	exon15	c.A5808G	p.Q1936Q	AAGTCAATATGTT		53	13	0.25	61	0	0				9	5	0.56				G	40933157	A	G	40933157	2	3	23	1	0	0	0	0	0	0	0	1	2681	98	4	4		4	CASC5	15	40933157	Silent	SNP	A	TCGA-2G-AAG8-01A-31D-A42Y-10		40933157	61598235	42	1463											
ZNF598	90850	mdanderson.org	37	chr16	2049632	2049632	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcactccgagcaggggccgGgccctccatgtgtccattaa	13	14	0	0	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	ZNF598,NS,carcinoma,+1,1	ZNF598	NM_178167	exon11	c.C1918A	p.P640T	GGGCCGGGCCCTC		16	3	0.19	28	0	0		1	1	110	0	0				T	2049632	G	T	2049632	3	4	23	1	0	0	0	0	1	0	0	0	18084	1232	43	3	812	3	ZNF598	16	2049632	Missense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10		2049632	88305121	43	1464											
ZP2	7783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	21209141	21209141	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actcttctccccactgctccCacttgcttttagatcagatg	5	15	3	2	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_003460	exon18	c.G2041A	p.G681R	TGCTCCCACTTGC		239	36	0.15	245	0	0				1	0	0				T	21209141	C	T	21209141	3	4	23	1	0	0	0	0	1	0	0	0	18257	594	21	3	204	3	ZP2	16	21209141	Missense_Mutation	SNP	C	TCGA-2G-AAG8-01A-31D-A42Y-10	19159509	21209141	69145612	44	1465											
ZNF423	23090	mdanderson.org	37	chr16	49670954	49670954	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttctgcaggtcatccacCgaggaaaattgcttgtcgca	10	11	2	0	rs143934881	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_015069	exon4	c.G2109T	p.S703S	ATCCACCGAGGAA		49	3	0.06	67	0	0				13	0	0				A	49670954	C	A	49670954	2	1	23	1	0	0	0	0	0	0	0	1	17954	639	23	1		1	ZNF423	16	49670954	Silent	SNP	C	TCGA-2G-AAG8-01A-31D-A42Y-10	28461813	49670954	40683799	45	1466											
USP6	9098	mdanderson.org	37	chr17	5037263	5037263	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacgactctccggaaccatGtcttctttagggatcgatat	10	10	3	0	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_004505	exon7	c.G466T	p.V156F	AACCATGTCTTCT		37	3	0.08	55	0	0				3	0	0				T	5037263	G	T	5037263	3	4	23	1	0	0	0	0	1	0	0	0	17145	1377	48	3	488	3	USP6	17	5037263	Missense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10		5037263	76157947	46	1467											
CDC27	996	mdanderson.org	37	chr17	45234372	45234372	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtttagataatatggaagttCctgttcccagtgggacagta	11	6	0	1	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_001114091	exon7	c.G749A	p.G250E	GAAGTTCCTGTTC		55	3	0.05	53	1	0.0188679245				19	0	0				T	45234372	C	T	45234372	3	4	23	1	0	0	0	0	1	0	0	0	3088	855	30	3	1795	3	CDC27	17	45234372	Missense_Mutation	SNP	C	TCGA-2G-AAG8-01A-31D-A42Y-10	40197109	45234372	35960838	47	1468											
BZRAP1	9256	mdanderson.org	37	chr17	56387455	56387455	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cctggatgtctgacaggtctGagttgcggccgtggtccacg	15	11	2	2	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_001261835	exon21	c.C3764A	p.S1255X	AGGTCTGAGTTGC		32	3	0.09	42	0	0				7	0	0				T	56387455	G	T	56387455	4	4	23	1	0	0	0	0	0	1	0	0	1580	1294	45	3	1853	3	BZRAP1	17	56387455	Nonsense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10	11153083	56387455	24807755	48	1469											
METTL4	64863	ucsc.edu;bcgsc.ca	37	chr18	2544256	2544256	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacaattaatttgtggtctGgaatggggagcacgtttaca	12	5	1	1	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	METTL4	NM_022840	exon8	c.C1211A	p.P404Q	TGGTCTGGAATGG		31	4	0.13	61	0	0		40		11	0	0				T	2544256	G	T	2544256	3	4	23	1	0	0	0	0	1	0	0	0	9551	1348	47	3	215	3	METTL4	18	2544256	Missense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10		2544256	75532992	49	1470											
MIER2	54531	mdanderson.org	37	chr19	308613	308613	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggtgtcttgctccgggcGcggacggccggggccatcgg	19	13	1	0	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_017550	exon12	c.C1162A	p.R388S	CCGGGCGCGGACG		32	3	0.09	43	0	0				100	0	0				T	308613	G	T	308613	3	4	23	1	0	0	0	0	1	0	0	0	9628	1087	38	1	487	1	MIER2	19	308613	Missense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10		308613	58820370	50	1471											
ADAMTS10	81794	broad.mit.edu;ucsc.edu	37	chr19	8657036	8657036	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccagcccggaggacactcGtcggccccatgcaccgttcc	11	18	0	0	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	ADAMTS10	.	.	.	.	ACACTCGTCGGCC		37	4	0.11	53	0	0		132		0	0					T	8657036	G	T	8657036	3	4	23	1	0	0	0	0	1	0	0	0	255	1160	40	1		1	ADAMTS10	19	8657036	Missense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10	8348423	8657036	50471947	51	1472											
BEST2	54831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	12864150	12864150	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accagtatgccagcctcatcCctgtctccttcgtgcttggt	8	15	2	0	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_017682	exon2	c.C229A	p.P77T	CTCATCCCTGTCT		92	14	0.15	114	0	0				0	0					A	12864150	C	A	12864150	3	1	23	1	0	0	0	0	1	0	0	0	1403	623	22	3	235	3	BEST2	19	12864150	Missense_Mutation	SNP	C	TCGA-2G-AAG8-01A-31D-A42Y-10	4207114	12864150	46264833	52	1473											
GYS1	2997	mdanderson.org	37	chr19	49472837	49472837	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gcgagggcgacggtggcaccGaggctggccgtgggtagcgg	22	10	0	0	rs137913986	bycluster;alternate_allele	TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_002103	exon16	c.C1922A	p.S641X	GGCACCGAGGCTG		15	3	0.2	17	0	0				51	0	0				T	49472837	G	T	49472837	4	4	23	1	0	0	0	0	0	1	0	0	6952	1059	37	1	295	1	GYS1	19	49472837	Nonsense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10	36608687	49472837	9656146	53	1474											
CENPB	1059	mdanderson.org	37	chr20	3766118	3766118	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgagcagcatggcctggCggtagtggcccttcacctgc	13	14	1	1	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_001810	exon1	c.G1013A	p.R338H	GCCTGGCGGTAGT		32	3	0.09	35	0	0				148	0	0				T	3766118	C	T	3766118	3	4	23	1	0	0	0	0	1	0	0	0	3249	768	27	1	790	1	CENPB	20	3766118	Missense_Mutation	SNP	C	TCGA-2G-AAG8-01A-31D-A42Y-10		3766118	59259402	54	1475											
CEBPB	1051	mdanderson.org	37	chr20	48808402	48808402	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgacgagtacaagatccggCgcgagcgcaacaacatcgcc	12	14	0	1	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_005194	exon1	c.C832T	p.R278C	ATCCGGCGCGAGC		36	3	0.08	23	0	0				174	0	0				T	48808402	C	T	48808402	3	4	23	1	0	0	0	0	1	0	0	0	3222	768	27	1	834	1	CEBPB	20	48808402	Missense_Mutation	SNP	C	TCGA-2G-AAG8-01A-31D-A42Y-10	45042284	48808402	14217118	55	1476											
HSCB	150274	mdanderson.org	37	chr22	29139966	29139966	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcagccagaggtctcaGgtagcttattggccaacccc	9	13	3	1	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_172002	exon2	c.G333T	p.Q111H	GTCTCAGGTAGCT		46	3	0.07	61	0	0				160	0	0				T	29139966	G	T	29139966	3	4	23	1	0	0	0	0	1	0	0	0	7414	1014	35	3	339	3	HSCB	22	29139966	Missense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10		29139966	22164600	56	1477											
PIK3IP1	113791	mdanderson.org	37	chr22	31679110	31679110	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggcccataaggggggtgGtgccctcctgagggtcaact	15	12	1	1	rs2040533	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_052880	exon6	c.C752A	p.T251N	GGGGTGGTGCCCT		57	2	0.04	68	0	0				47	0	0				T	31679110	G	T	31679110	3	4	23	1	0	0	0	0	1	0	0	0	11964	1261	44	3	43	3	PIK3IP1	22	31679110	Missense_Mutation	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10	2539144	31679110	19625456	57	1478											
RANGAP1	5905	mdanderson.org	37	chr22	41660689	41660689	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccgccgccaatgcccatGccacagttgttgagcttgag	11	13	0	2	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_002883	exon5	c.C459A	p.G153G	GCCCATGCCACAG		33	3	0.09	41	0	0				412	1	0				T	41660689	G	T	41660689	2	4	23	1	0	0	0	0	0	0	0	1	13084	1306	46	2		2	RANGAP1	22	41660689	Silent	SNP	G	TCGA-2G-AAG8-01A-31D-A42Y-10	9981579	41660689	9643877	58	1479											
PANX2	56666	hgsc.bcm.edu	37	chr22	50617594	50617595	+	Frame_Shift_Ins	INS	-	-	C													cgggaggaggaggacgggggINScccccgcctgccgcaggacg					novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	PANX2	NM_052839	exon3	c.1922_1923insC	p.G641fs	ACGGGGGCCCCCG		82	11	0.13	87	0	0		69		26	0	0				C	50617595	-	C	50617594	7	5	23	1	0	1	1	0	0	0	0	0	11467	1203	42	0	1932	0	PANX2	22	50617594	Frame_Shift_Ins	INS	-	TCGA-2G-AAG8-01A-31D-A42Y-10	8956905	50617594	686972	59	1480											
HUWE1	10075	mdanderson.org	37	chrX	53672397	53672397	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacttgcatatcagaggaagCcaataaagttgtcaaatgct	8	8	2	1	novel		TCGA-2G-AAG8-01A-31D-A42Y-10	TCGA-2G-AAG8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ceba955-6002-4bc2-948a-a361cce3d2a1	6b451c5e-f92b-4fbc-8cc5-7396fcc3e1f9	.	.	NM_031407	exon7	c.G370A	p.A124T	AGGAAGCCAATAA		35	3	0.09	43	0	0				1	0	0				T	53672397	C	T	53672397	3	4	23	1	0	0	0	0	1	0	0	0	7504	739	26	2	13066	2	HUWE1	23	53672397	Missense_Mutation	SNP	C	TCGA-2G-AAG8-01A-31D-A42Y-10		53672397	101598163	60	1481											
ACTRT2	140625	broad.mit.edu	37	chr1	2938392	2938392	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acctgaaattccaggctcccTcagcagaggccaaccagaag	9	14	1	3	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	ACTRT2,NS,adenocarcinoma,0,1	ACTRT2	NM_080431	exon1	c.T142C	p.S48P	GCTCCCTCAGCAG		127	3	0.02	122	1	0.0081967213		69	1	0	0					C	2938392	T	C	2938392	3	2	24	1	0	0	0	0	1	0	0	0	218	1551	54	4	144	4	ACTRT2	1	2938392	Missense_Mutation	SNP	T	TCGA-2G-AAG9-01A-11D-A42Y-10		2938392	246312229	1	1482											
MEGF6	1953	broad.mit.edu	37	chr1	3422702	3422702	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcggccgtagagccctgGgtcgcagaggcaggccccgt	17	13	0	2	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	MEGF6	NM_001409	exon15	c.C1888A	p.P630T	GCCCTGGGTCGCA		132	4	0.03	136	0	0		91		12	0	0				T	3422702	G	T	3422702	3	4	24	1	0	0	0	0	1	0	0	0	9511	1232	43	3	2829	3	MEGF6	1	3422702	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	484310	3422702	245827919	2	1483											
AHDC1	27245	mdanderson.org	37	chr1	27875918	27875918	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggggtccgccccagccccGctgctacccactgccactgg	12	19	0	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001029882	exon6	c.C2709T	p.S903S	AGCCCCGCTGCTA		56	3	0.05	46	0	0				49	0	0				A	27875918	G	A	27875918	2	1	24	1	0	0	0	0	0	0	0	1	409	1078	38	1		1	AHDC1	1	27875918	Silent	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	24453216	27875918	221374703	3	1484											
ATP1A1	476	broad.mit.edu	37	chr1	116946529	116946529	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tacctggtggttctgtgcctTcccctactctcttctcatct	6	15	4	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	ATP1A1	NM_000701	exon22	c.T2975C	p.F992S	GTGCCTTCCCCTA		149	3	0.02	124	0	0		87		845	0	0				C	116946529	T	C	116946529	3	2	24	1	0	0	0	0	1	0	0	0	1127	1783	62	4	3077	4	ATP1A1	1	116946529	Missense_Mutation	SNP	T	TCGA-2G-AAG9-01A-11D-A42Y-10	89070611	116946529	132304092	4	1485											
TCHH	7062	mdanderson.org	37	chr1	152082647	152082647	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgcggtactgcctctcccActcctggcgccttctcttct	7	17	3	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	TCHH,extremity,malignant_melanoma,0,1	TCHH	NM_007113	exon3	c.T3046C	p.W1016R	TCTCCCACTCCTG		114	9	0.08	100	6	0.06		0	1	3	0	0				G	152082647	A	G	152082647	3	3	24	1	0	0	0	0	1	0	0	0	15759	159	6	4	2789	4	TCHH	1	152082647	Missense_Mutation	SNP	A	TCGA-2G-AAG9-01A-11D-A42Y-10	35136118	152082647	97167974	5	1486											
ASPM	259266	broad.mit.edu	37	chr1	197070295	197070295	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgcattcgatagaatgactGaattagtgtggcagcccggt	13	7	0	3	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	ASPM	NM_018136	exon18	c.C8086A	p.Q2696K	ATGACTGAATTAG		149	5	0.03	133	1	0.007518797		444		53	0	0				T	197070295	G	T	197070295	3	4	24	1	0	0	0	0	1	0	0	0	1055	1299	45	3	2391	3	ASPM	1	197070295	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	44987648	197070295	52180326	6	1487											
IFT172	26160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	27677283	27677283	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttcagcctcttcgaatttAccctacagggagagaaaggc	10	11	2	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_015662	exon32	c.T3468C	p.G1156G	GAATTTACCCTAC		102	32	0.31	90	0	0				171	55	0.32				G	27677283	A	G	27677283	2	3	24	1	0	0	0	0	0	0	0	1	7600	378	14	4		4	IFT172	2	27677283	Silent	SNP	A	TCGA-2G-AAG9-01A-11D-A42Y-10		27677283	215522090	7	1488											
EPC2	26122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	149501290	149501290	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gatggaaattaagcctttgcAatttgaaattatgattgaca	8	4	0	3	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_015630	exon3	c.A413T	p.Q138L	CTTTGCAATTTGA		245	49	0.2	249	0	0				21	7	0.33				T	149501290	A	T	149501290	3	4	24	1	0	0	0	0	1	0	0	0	5189	130	5	5	423	5	EPC2	2	149501290	Missense_Mutation	SNP	A	TCGA-2G-AAG9-01A-11D-A42Y-10	121824007	149501290	93698083	8	1489											
ATF2	1386	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	175979435	175979435	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tacacaattggcctgttagaGgatggtgcctgggtgattac	13	7	0	2	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001880	exon8	c.C609G	p.S203S	GTTAGAGGATGGT		127	6	0.05	162	0	0				36	1	0.03				C	175979435	G	C	175979435	2	2	24	1	0	0	0	0	0	0	0	1	1079	987	35	5		5	ATF2	2	175979435	Silent	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	26478145	175979435	67219938	9	1490											
HECW2	57520	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	197183390	197183390	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agctgcagctccctccaggcTccccctccgctgccagacct	8	21	0	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	HECW2	NM_020760	exon9	c.A2224G	p.S742G	CCAGGCTCCCCCT		146	6	0.04	160	2	0.0125		239		0	0					C	197183390	T	C	197183390	3	2	24	1	0	0	0	0	1	0	0	0	7083	1551	54	4	2578	4	HECW2	2	197183390	Missense_Mutation	SNP	T	TCGA-2G-AAG9-01A-11D-A42Y-10	21203955	197183390	46015983	10	1491											
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	228882457	228882457	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggctgccacttcattggcaAaaagattgacagaatctggg	11	8	2	3	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_030623	exon7	c.T3113C	p.F1038S	TTGGCAAAAAGAT		122	38	0.31	109	0	0				0	0					G	228882457	A	G	228882457	3	3	24	1	0	0	0	0	1	0	0	0	15103	14	1	4	2013	4	SPHKAP	2	228882457	Missense_Mutation	SNP	A	TCGA-2G-AAG9-01A-11D-A42Y-10	31699067	228882457	14316916	11	1492											
KIF1A	547	broad.mit.edu	37	chr2	241696935	241696935	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggctcgagaaggtgggggAgggggtgagagcagccatgc	23	6	0	2	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	KIF1A	NM_001244008	exon27	c.T2659C	p.S887P	TGGGGGAGGGGGT		133	20	0.15	120	12	0.1		152		0	0					G	241696935	A	G	241696935	3	3	24	1	0	0	0	0	1	0	0	0	8324	319	11	4		4	KIF1A	2	241696935	Missense_Mutation	SNP	A	TCGA-2G-AAG9-01A-11D-A42Y-10	12814478	241696935	1502438	12	1493											
OSBPL10	114884	broad.mit.edu;mdanderson.org	37	chr3	32022633	32022633	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcggctgctgctgttgctAcccccgccgccgtctgtgcc	12	18	1	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	OSBPL10	NM_017784	exon1	c.T39G	p.G13G	GTTGCTACCCCCG		13	6	0.46	21	4	0.1904761905		160		0	0					C	32022633	A	C	32022633	2	2	24	1	0	0	0	0	0	0	0	1	11321	378	14	4		4	OSBPL10	3	32022633	Silent	SNP	A	TCGA-2G-AAG9-01A-11D-A42Y-10		32022633	165999797	13	1494											
VIPR1	7433	broad.mit.edu;mdanderson.org	37	chr3	42560718	42560718	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccttacccccataggctGcagcaagatgtgggacaacc	10	14	0	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	VIPR1	NM_004624	exon3	c.G188T	p.C63F	TAGGCTGCAGCAA		65	4	0.06	84	0	0		45		0	0					T	42560718	G	T	42560718	3	4	24	1	0	0	0	0	1	0	0	0	17228	1319	46	2	198	2	VIPR1	3	42560718	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	10538085	42560718	155461712	14	1495											
PTPN23	25930	mdanderson.org	37	chr3	47447256	47447256	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caggagcgctgcactccatgCtgggggccatggacaagcgg	16	12	0	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_015466	exon5	c.C382T	p.L128L	TCCATGCTGGGGG		49	3	0.06	59	0	0				30	0	0				T	47447256	C	T	47447256	2	4	24	1	0	0	0	0	0	0	0	1	12839	796	28	2		2	PTPN23	3	47447256	Silent	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	4886538	47447256	150575174	15	1496											
PTPN23	25930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	47450550	47450550	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cgcttgaccaggtccgggctGccctgcccacaccggccctc	11	20	0	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_015466	exon16	c.G1615C	p.A539P	CGGGCTGCCCTGC		45	15	0.33	59	0	0				39	17	0.44				C	47450550	G	C	47450550	3	2	24	1	0	0	0	0	1	0	0	0	12839	1319	46	5	1677	5	PTPN23	3	47450550	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	3294	47450550	150571880	16	1497											
P4HTM	54681	mdanderson.org	37	chr3	49042540	49042540	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggaacacccatgacacaGgcacagccctgcactgtggg	11	15	0	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_177938	exon6	c.G1134T	p.Q378H	GACACAGGCACAG		43	3	0.07	35	0	0				4	0	0				T	49042540	G	T	49042540	3	4	24	1	0	0	0	0	1	0	0	0	11406	991	35	3	1156	3	P4HTM	3	49042540	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	1591990	49042540	148979890	17	1498											
MST1	4485	hgsc.bcm.edu;broad.mit.edu	37	chr3	49723603	49723603	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctgagccgtcggggttccGgcagaagttctcccgaaggt	14	12	2	2	rs199969873	bycluster;by1000genomes	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	MST1,NS,carcinoma,0,5	MST1	NM_020998	exon9	c.C1039T	p.R347W	GGTTCCGGCAGAA		37	6	0.16	51	2	0.0392156863	0.005	0	5	19	0	0				A	49723603	G	A	49723603	3	1	24	1	0	0	0	0	1	0	0	0	9937	1115	39	1	1178	1	MST1	3	49723603	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	681063	49723603	148298827	18	1499											
CLSTN2	64084	mdanderson.org	37	chr3	140282817	140282817	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccagtggtcccaagcattGccacagtggtcatcatcatc	8	13	3	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_022131	exon16	c.G2497T	p.A833S	AGCATTGCCACAG		78	5	0.06	95	0	0				0	0					T	140282817	G	T	140282817	3	4	24	1	0	0	0	0	1	0	0	0	3585	1319	46	2	2559	2	CLSTN2	3	140282817	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	90559214	140282817	57739613	19	1500											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	55599321	55599321	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgattttggtctagccagagAcatcaagaatgattctaatt	8	6	3	4	rs121913507	bycluster	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	KIT,colon,carcinoma,+1,932	KIT	NM_000222	exon17	c.A2447T	p.D816V	CCAGAGACATCAA		65	10	0.15	93	0	0		1	932	103	53	0.51				T	55599321	A	T	55599321	3	4	24	1	0	0	0	0	1	0	0	0	8371	275	10	5	2513	5	KIT	4	55599321	Missense_Mutation	SNP	A	TCGA-2G-AAG9-01A-11D-A42Y-10		55599321	135554955	20	1501											
CLPTM1L	81037	hgsc.bcm.edu;mdanderson.org	37	chr5	1341803	1341803	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctgtgtatcagactcccCggtgagcaggttgatttctt	10	11	2	3	rs200467747	bycluster	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_030782	exon3	c.G436A	p.G146R	ACTCCCCGGTGAG		77	4	0.05	101	0	0				203	0	0				T	1341803	C	T	1341803	3	4	24	1	0	0	0	0	1	0	0	0	3578	652	23	1	1240	1	CLPTM1L	5	1341803	Missense_Mutation	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10		1341803	179573457	21	1502											
DNAJC18	202052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	138755762	138755762	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgttgtttctccttccaaCaactagtctggatataatca	5	9	3	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_152686	exon7	c.G932A	p.C311Y	TTCCAACAACTAG		176	34	0.19	151	0	0				40	12	0.3				T	138755762	C	T	138755762	3	4	24	1	0	0	0	0	1	0	0	0	4664	478	17	3	152	3	DNAJC18	5	138755762	Missense_Mutation	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	137413959	138755762	42159498	22	1503											
PCDHB7	56129	hgsc.bcm.edu;broad.mit.edu	37	chr5	140553994	140553994	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gactacgaggccctgcaggcGttcgagttccgcgtgggcgc	16	13	0	0	rs374392843		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	PCDHB7,NS,carcinoma,0,4	PCDHB7	NM_018940	exon1	c.G1578T	p.A526A	GCAGGCGTTCGAG		71	3	0.04	52	1	0.0192307692		0	4	0	0					T	140553994	G	T	140553994	2	4	24	1	0	0	0	0	0	0	0	1	11593	1132	40	1		1	PCDHB7	5	140553994	Silent	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	1798232	140553994	40361266	23	1504											
PCDHGA12	0	broad.mit.edu	37	chr5	140811892	140811892	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgctgagctccttcgactaCgagcagttccgagacttgca	11	13	0	2	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	PCDHGA12	NM_032094	exon1	c.C1566A	p.Y522X	CGACTACGAGCAG		89	3	0.03	82	0	0		271		1	0	0				A	140811892	C	A	140811892	4	1	24	1	0	0	0	0	0	1	0	0	11599	547	19	1	1568	1	PCDHGA12	5	140811892	Nonsense_Mutation	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	257898	140811892	40103368	24	1505											
NHP2	55651	broad.mit.edu	37	chr5	177576723	177576723	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	accggagcccctcataggggTaggggcagggactgcacctc	15	13	1	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	NHP2	NM_017838	exon4	c.A453C	p.L151L	TAGGGGTAGGGGC		273	23	0.08	267	23	0.0861423221		12		488	10	0.02				G	177576723	T	G	177576723	2	3	24	1	0	0	0	0	0	0	0	1	10455	1625	57	4		4	NHP2	5	177576723	Silent	SNP	T	TCGA-2G-AAG9-01A-11D-A42Y-10	36764831	177576723	3338537	25	1506											
ICK	22858	broad.mit.edu	37	chr6	52876923	52876923	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atccaagtcatccaagtcagCccaatcatctgaatcctttg	5	13	4	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	ICK	NM_016513	exon11	c.G1255A	p.A419T	AGTCAGCCCAATC		86	3	0.03	94	1	0.0106382979		62		11	0	0				T	52876923	C	T	52876923	3	4	24	1	0	0	0	0	1	0	0	0	7527	739	26	2	663	2	ICK	6	52876923	Missense_Mutation	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10		52876923	118238144	26	1507											
RIMS1	22999	mdanderson.org	37	chr6	72975733	72975733	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagaccagatactagtttgCattcaccagaacgagaaagg	10	8	1	4	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_014989	exon22	c.C3379T	p.H1127Y	AGTTTGCATTCAC		52	3	0.06	45	0	0				0	0					T	72975733	C	T	72975733	3	4	24	1	0	0	0	0	1	0	0	0	13418	710	25	2	3628	2	RIMS1	6	72975733	Missense_Mutation	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	20098810	72975733	98139334	27	1508											
HSF2	3298	mdanderson.org	37	chr6	122720904	122720904	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaagcagagttcgaacgtgCcggctttcctcagcaagctg	12	11	1	2	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001135564	exon1	c.C22T	p.P8S	AACGTGCCGGCTT		45	3	0.07	57	0	0				35	0	0				T	122720904	C	T	122720904	3	4	24	1	0	0	0	0	1	0	0	0	7436	739	26	2	24	2	HSF2	6	122720904	Missense_Mutation	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	49745171	122720904	48394163	28	1509											
FSCN1	6624	broad.mit.edu	37	chr7	5645080	5645080	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcctcggcggaaaccgtggAccccgcctcgctctgggagt	15	15	1	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	FSCN1,NS,carcinoma,+1,1	FSCN1	NM_003088	exon5	c.A1457C	p.D486A	CCGTGGACCCCGC		100	25	0.25	81	17	0.2098765432		29	1	252	0	0				C	5645080	A	C	5645080	3	2	24	1	0	0	0	0	1	0	0	0	6101	275	10	4	1475	4	FSCN1	7	5645080	Missense_Mutation	SNP	A	TCGA-2G-AAG9-01A-11D-A42Y-10		5645080	153493583	29	1510											
ISPD	729920	hgsc.bcm.edu	37	chr7	16415788	16415788	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgctctgtgtctggcacGttctagcgagtagtctaagc	11	10	4	0	rs376411072	alternate_allele	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	ISPD_ENST00000407010,NS,carcinoma,0,2	ISPD_ENST00000407010	NM_001101426	exon3	c.C613A	p.R205S	TGGCACGTTCTAG		113	5	0.04	83	0	0		0	2	13	0	0				T	16415788	G	T	16415788	3	4	24	1	0	0	0	0	1	0	0	0	7907	1145	40	1	774	1	ISPD	7	16415788	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	10770708	16415788	142722875	30	1511											
FZD9	8326	broad.mit.edu	37	chr7	72849813	72849813	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagcggccgcggggcccggAggccggagggactgctcgct	20	14	0	0	rs200330017		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	FZD9,NS,carcinoma,+2,1	FZD9	NM_003508	exon1	c.A1476G	p.G492G	GCCCGGAGGCCGG		108	15	0.14	74	5	0.0675675676		51	1	3	0	0				G	72849813	A	G	72849813	2	3	24	1	0	0	0	0	0	0	0	1	6171	291	11	4		4	FZD9	7	72849813	Silent	SNP	A	TCGA-2G-AAG9-01A-11D-A42Y-10	56434025	72849813	86288850	31	1512											
KRBA1	84626	broad.mit.edu	37	chr7	149430561	149430561	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccaggtgaatcggctggggAggcgcccccaaggccctggg	17	14	0	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	KRBA1	.	.	.	.	CTGGGGAGGCGCC		61	10	0.16	47	2	0.0425531915		68		37	1	0.03				G	149430561	A	G	149430561	3	3	24	1	0	0	0	0	1	0	0	0	8481	295	11	4	2579	4	KRBA1	7	149430561	Missense_Mutation	SNP	A	TCGA-2G-AAG9-01A-11D-A42Y-10	76580748	149430561	9708102	32	1513											
WRN	7486	broad.mit.edu	37	chr8	30945390	30945390	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cctactaaagaagaagaagaAgatgatgaaaatgaagctaa	9	4	0	8	rs149565907	bycluster;by1000genomes	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	WRN,NS,carcinoma,0,1	WRN	NM_000553	exon12	c.A1530T	p.E510D	AGAAGAAGATGAT		70	3	0.04	65	0	0		116	1	12	0	0				T	30945390	A	T	30945390	3	4	24	1	0	0	0	0	1	0	0	0	17461	69	3	5	1572	5	WRN	8	30945390	Missense_Mutation	SNP	A	TCGA-2G-AAG9-01A-11D-A42Y-10		30945390	115418632	33	1514											
ATAD2	29028	bcgsc.ca	37	chr8	124382188	124382188	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatcatcatcatcatcgtcAtcatcatcatcatcttcatc	1	14	12	0	rs112492316		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	ATAD2	NM_014109	exon7	c.T804C	p.D268D	ATCGTCATCATCA		161	7	0.04	99	1	0.0101010101		160		36	0	0				G	124382188	A	G	124382188	2	3	24	1	0	0	0	0	0	0	0	1	1070	214	8	4		4	ATAD2	8	124382188	Silent	SNP	A	TCGA-2G-AAG9-01A-11D-A42Y-10	93436798	124382188	21981834	34	1515											
TMEM65	157378	bcgsc.ca	37	chr8	125384234	125384234	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctccttcttggggtgcgtGcccagccgcctggggccgcc	16	16	1	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	TMEM65	NM_194291	exon1	c.C165A	p.G55G	GTGCGTGCCCAGC		27	4	0.15	26	0	0		14		4	0	0				T	125384234	G	T	125384234	2	4	24	1	0	0	0	0	0	0	0	1	16253	1306	46	2		2	TMEM65	8	125384234	Silent	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	1002046	125384234	20979788	35	1516											
RANBP6	26953	mdanderson.org	37	chr9	6014327	6014327	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgtccaagtgtagtacaGgctgcagccctcacccttgg	10	13	2	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001243203	exon2	c.C166A	p.L56M	AGTACAGGCTGCA		58	3	0.05	106	0	0				12	0	0				T	6014327	G	T	6014327	3	4	24	1	0	0	0	0	1	0	0	0	13082	987	35	3	2040	3	RANBP6	9	6014327	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10		6014327	135199104	36	1517											
FBP2	8789	mdanderson.org	37	chr9	97349666	97349666	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtactataggaggattggaCcatgttgatcaccagggaat	13	6	1	1	rs573212	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_003837	exon2	c.G256A	p.V86I	ATTGGACCATGTT		95	3	0.03	122	0	0				0	0					T	97349666	C	T	97349666	3	4	24	1	0	0	0	0	1	0	0	0	5738	507	18	3	787	3	FBP2	9	97349666	Missense_Mutation	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	91335339	97349666	43863765	37	1518											
C9orf96	169436	mdanderson.org	37	chr9	136265602	136265602	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accatggagctacatgacagGgtcctcgatgtccagctgtg	12	11	0	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	C9orf96_ENST00000371957,NS,carcinoma,+1,2	C9orf96_ENST00000371957	NM_153710	exon12	c.G1143T	p.R381S	TGACAGGGTCCTC		21	2	0.1	28	0	0		1	2	0	0					T	136265602	G	T	136265602	3	4	24	1	0	0	0	0	1	0	0	0	2526	1223	43	3	1189	3	C9orf96	9	136265602	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	38915936	136265602	4947829	38	1519											
PITRM1	10531	mdanderson.org	37	chr10	3214936	3214936	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagccgcctcagcacacacAggccctgccgcccgccgcag	10	21	2	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001242307	exon1	c.T29C	p.L10P	ACACACAGGCCCT		25	3	0.12	33	0	0				24	0	0				G	3214936	A	G	3214936	3	3	24	1	0	0	0	0	1	0	0	0	12000	188	7	4	3192	4	PITRM1	10	3214936	Missense_Mutation	SNP	A	TCGA-2G-AAG9-01A-11D-A42Y-10		3214936	132319811	39	1520											
BTAF1	9044	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	93784712	93784712	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	acctcctggtcagaggcattCcattgtttcccggtaagtgg	11	11	1	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	BTAF1	NM_003972	exon35	c.C5063G	p.S1688C	GGCATTCCATTGT		142	5	0.04	141	0	0		148		78	3	0.04				G	93784712	C	G	93784712	3	3	24	1	0	0	0	0	1	0	0	0	1538	855	30	5	5201	5	BTAF1	10	93784712	Missense_Mutation	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	90569776	93784712	41750035	40	1521											
TPP1	1200	mdanderson.org	37	chr11	6637242	6637242	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctagagtacttacctggagGcagggaaggtagggcggaac	17	7	0	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	TPP1,NS,carcinoma,-1,1	TPP1	NM_000391	exon9	c.C1139A	p.A380D	CTGGAGGCAGGGA		49	3	0.06	44	0	0		-1	1	154	0	0				T	6637242	G	T	6637242	3	4	24	1	0	0	0	0	1	0	0	0	16471	1203	42	2	572	2	TPP1	11	6637242	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10		6637242	128369274	41	1522											
CD6	923	ucsc.edu	37	chr11	60777289	60777289	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctctccaactgctcctggCggttcaacaactccaacctc	5	19	2	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	CD6	NM_006725	exon5	c.C1027T	p.R343W	TCCTGGCGGTTCA		39	4	0.1	25	0	0		122		17	0	0				T	60777289	C	T	60777289	3	4	24	1	0	0	0	0	1	0	0	0	3050	759	27	1	1045	1	CD6	11	60777289	Missense_Mutation	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	54140047	60777289	74229227	42	1523											
GANAB	23193	hgsc.bcm.edu	37	chr11	62400201	62400201	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cacatccaaattgtagaggcGatatggctccccacccctgc	8	15	0	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	GANAB,NS,carcinoma,+1,1	GANAB	NM_198335	exon10	c.C898A	p.R300S	AGAGGCGATATGG		56	3	0.05	59	0	0		1	1	313	0	0				T	62400201	G	T	62400201	3	4	24	1	0	0	0	0	1	0	0	0	6272	1058	37	1	2066	1	GANAB	11	62400201	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	1622912	62400201	72606315	43	1524											
KDM2A	22992	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	66948868	66948871	+	In_Frame_Del	DEL	AAGT	AAGT	-													attctgatggactcggaataAagtaagtgttttcagcctgg					novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	AAGT	AAGT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_012308	exon4	c.258_260del	p.86_87del	GGAATAAAGTAAG		96	22	0.23	83	0	0				11	0	0				-	66948871	AAGT	-	66948868	7	5	24	1	0	1	0	1	0	0	0	0	8167	28	1	0	269	0	KDM2A	11	66948868	In_Frame_Del	DEL	AAGT	TCGA-2G-AAG9-01A-11D-A42Y-10	4548667	66948868	68057648	44	1525											
PITPNM1	9600	mdanderson.org	37	chr11	67261233	67261233	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgctggcggtgaaggagccGtcgatgctgaagaccacagc	15	11	0	3	rs370108604	alternate_allele	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_004910	exon21	c.C3084A	p.D1028E	GGAGCCGTCGATG		40	3	0.08	46	0	0				35	0	0				T	67261233	G	T	67261233	3	4	24	1	0	0	0	0	1	0	0	0	11997	1136	40	1	666	1	PITPNM1	11	67261233	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	312365	67261233	67745283	45	1526											
DDX6	1656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	118627002	118627002	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attgcggcataagccatttcGgaaatcatgaaatacacgat	8	8	1	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_004397	exon11	c.C1141A	p.R381R	CATTTCGGAAATC		42	12	0.29	39	0	0				107	52	0.49				T	118627002	G	T	118627002	2	4	24	1	0	0	0	0	0	0	0	1	4400	1124	39	1		1	DDX6	11	118627002	Silent	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	51365769	118627002	16379514	46	1527											
VPS26B	112936	mdanderson.org	37	chr11	134114845	134114845	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cctacaggagagtccatcccGatccggctcttcctggccgg	11	16	1	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	VPS26B,NS,carcinoma,+1,1	VPS26B	NM_052875	exon5	c.G735T	p.P245P	CATCCCGATCCGG		31	3	0.1	41	0	0		1	1	75	0	0				T	134114845	G	T	134114845	2	4	24	1	0	0	0	0	0	0	0	1	17257	1045	37	1		1	VPS26B	11	134114845	Silent	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	15487843	134114845	891671	47	1528											
PRB3	5544	broad.mit.edu	37	chr12	11420543	11420543	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgggggaccttgggactGgtttcctccttgtgggggtg	19	7	0	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	PRB3_ENST00000538488,NS,carcinoma,0,1	PRB3	NM_006249	exon3	c.C640A	p.Q214K	GGGACTGGTTTCC		282	9	0.03	128	4	0.03125		84	1	1	0	0				T	11420543	G	T	11420543	1	4	24	0	1	0	0	0	0	0	0	0	12495	1357	47	3		3	PRB3	12	11420543	RNA	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10		11420543	122431352	48	1529											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	25380271	25380271	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtccctcattgcactgtactCctcttgacctgctgtgtcga	8	14	2	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	KRAS_ENST00000256078,caecum,carcinoma,0,6	KRAS_ENST00000256078	NM_004985	exon3	c.G187A	p.E63K	TGTACTCCTCTTG		218	42	0.19	97	1	0.0103092784		0	6	127	33	0.26				T	25380271	C	T	25380271	3	4	24	1	0	0	0	0	1	0	0	0	8480	864	30	3	515	3	KRAS	12	25380271	Missense_Mutation	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	13959728	25380271	108471624	49	1530											
SPATS2	65244	broad.mit.edu	37	chr12	49908383	49908383	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cttgctgaaatggacaaagtGaaagctgaagcaagtaagat	11	5	0	4	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	SPATS2	NM_023071	exon10	c.G885T	p.V295V	CAAAGTGAAAGCT		99	4	0.04	64	0	0		43		111	0	0				T	49908383	G	T	49908383	2	4	24	1	0	0	0	0	0	0	0	1	15074	1277	45	3		3	SPATS2	12	49908383	Silent	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	24528112	49908383	83943512	50	1531											
LETMD1	25875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	51445948	51445948	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atgtggaagcacaatataaaGtttcatcaacttccataccg	6	9	2	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001243689	exon3	c.G348C	p.K116N	TATAAAGTTTCAT		75	9	0.12	63	0	0				28	5	0.18				C	51445948	G	C	51445948	3	2	24	1	0	0	0	0	1	0	0	0	8774	1020	36	5	358	5	LETMD1	12	51445948	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	1537565	51445948	82405947	51	1532											
AMHR2	269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	53825148	53825148	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agactgtacttcaattcctgCccctaccatcctcccctgta	4	17	1	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_020547	exon11	c.C1613T	p.A538V	TTCCTGCCCCTAC		206	41	0.2	144	0	0				3	0	0				T	53825148	C	T	53825148	3	4	24	1	0	0	0	0	1	0	0	0	569	739	26	2	1655	2	AMHR2	12	53825148	Missense_Mutation	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	2379200	53825148	80026747	52	1533											
GNS	2799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	65141505	65141505	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aacatacctcatttaaatatTtccctgcaaaaaaggtctga	4	9	2	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_002076	exon3	c.A446G	p.K149R	AAATATTTCCCTG		241	51	0.21	114	0	0				82	11	0.13				C	65141505	T	C	65141505	3	2	24	1	0	0	0	0	1	0	0	0	6591	1841	64	4	1260	4	GNS	12	65141505	Missense_Mutation	SNP	T	TCGA-2G-AAG9-01A-11D-A42Y-10	11316357	65141505	68710390	53	1534											
PLXNC1	10154	broad.mit.edu	37	chr12	94658982	94658982	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agactggctgttgtggcaggTtccggaattcagtactgtgg	15	7	1	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	PLXNC1	NM_005761	exon21	c.T3578G	p.V1193G	GGCAGGTTCCGGA		160	30	0.19	131	18	0.1374045802		135		20	3	0.15				G	94658982	T	G	94658982	3	3	24	1	0	0	0	0	1	0	0	0	12173	1725	60	4	3660	4	PLXNC1	12	94658982	Missense_Mutation	SNP	T	TCGA-2G-AAG9-01A-11D-A42Y-10	29517477	94658982	39192913	54	1535											
ULK1	8408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	132404132	132404132	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgtcgtccactgtgaagCagggtgagggctgcgaccgc	16	12	0	2	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	ULK1,NS,carcinoma,0,1	ULK1	NM_003565	exon25	c.C2800A	p.Q934K	GTGAAGCAGGGTG		57	10	0.18	51	0	0		0	1	153	29	0.19				A	132404132	C	A	132404132	3	1	24	1	0	0	0	0	1	0	0	0	17034	711	25	2	2898	2	ULK1	12	132404132	Missense_Mutation	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	37745150	132404132	1447763	55	1536											
GOLGA3	2802	broad.mit.edu;mdanderson.org	37	chr12	133381349	133381349	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcatgtcctctaccttgGccataagcctctggtactgc	8	14	3	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	GOLGA3	NM_001172557	exon7	c.C1550A	p.A517D	ACCTTGGCCATAA		93	4	0.04	60	0	0		234		65	0	0				T	133381349	G	T	133381349	3	4	24	1	0	0	0	0	1	0	0	0	6595	1203	42	2	3156	2	GOLGA3	12	133381349	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	977217	133381349	470546	56	1537											
FLT3	2322	ucsc.edu	37	chr13	28644724	28644724	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	agatcttgatttgtaatagtCccaaatatcattgcagaaaa	6	6	2	3	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	FLT3	NM_004119	exon2	c.G69T	p.G23G	AATAGTCCCAAAT		42	4	0.1	46	0	0		15525		0	0					A	28644724	C	A	28644724	2	1	24	1	0	0	0	0	0	0	0	1	5974	842	30	3		3	FLT3	13	28644724	Silent	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10		28644724	86525154	57	1538											
IPO5	3843	hgsc.bcm.edu	37	chr13	98658520	98658520	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagcacatcgttgagaatgCggttcaaaaagaactgagac	11	7	1	3	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	IPO5,NS,carcinoma,0,1	IPO5	NM_002271	exon17	c.C1688T	p.A563V	AGAATGCGGTTCA		93	4	0.04	98	0	0		0	1	164	0	0				T	98658520	C	T	98658520	3	4	24	1	0	0	0	0	1	0	0	0	7839	768	27	1	1746	1	IPO5	13	98658520	Missense_Mutation	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	70013796	98658520	16511358	58	1539											
CCDC88C	440193	mdanderson.org	37	chr14	91804418	91804418	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggtcagctccagctccagCctctccacgcggttcgcctt	10	18	2	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001080414	exon10	c.G981A	p.R327R	CTCCAGCCTCTCC		44	3	0.07	47	0	0				8	0	0				T	91804418	C	T	91804418	2	4	24	1	0	0	0	0	0	0	0	1	2885	738	26	2		2	CCDC88C	14	91804418	Silent	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10		91804418	15545122	59	1540											
TRMT61A	115708	mdanderson.org	37	chr14	104001089	104001089	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacaccagccccttccgcagCggcacgcccatgaaggaggc	12	17	0	1	rs372778660		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_152307	exon4	c.C801T	p.S267S	CCGCAGCGGCACG		32	3	0.09	29	0	0				53	0	0				T	104001089	C	T	104001089	2	4	24	1	0	0	0	0	0	0	0	1	16629	767	27	1		1	TRMT61A	14	104001089	Silent	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	12196671	104001089	3348451	60	1541											
PACS2	23241	mdanderson.org	37	chr14	105834425	105834425	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgcagataactactccgagGaggagtatgagagcttctcc	11	11	1	2	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_015197	exon6	c.G601T	p.E201X	TCCGAGGAGGAGT		45	3	0.07	50	0	0				20	0	0				T	105834425	G	T	105834425	4	4	24	1	0	0	0	0	0	1	0	0	11419	1175	41	3	623	3	PACS2	14	105834425	Nonsense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	1833336	105834425	1515115	61	1542											
GGA2	23062	mdanderson.org	37	chr16	23481479	23481479	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatacacaatgagaggcggCaggctgcctggtataaaggg	14	8	1	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_015044	exon15	c.G1458A	p.L486L	AGGCGGCAGGCTG		39	3	0.08	36	0	0				158	0	0				T	23481479	C	T	23481479	2	4	24	1	0	0	0	0	0	0	0	1	6394	697	25	2		2	GGA2	16	23481479	Silent	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10		23481479	66873274	62	1543											
UBFD1	56061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	23569548	23569548	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	accaagcatgacgtgaagttCcccctggacagcacaggctc	10	14	0	2	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	UBFD1,colon,carcinoma,+2,1	UBFD1	NM_019116	exon2	c.C303T	p.F101F	GAAGTTCCCCCTG		70	9	0.13	83	0	0		2	1	111	25	0.23				T	23569548	C	T	23569548	2	4	24	1	0	0	0	0	0	0	0	1	16944	854	30	3		3	UBFD1	16	23569548	Silent	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	88069	23569548	66785205	63	1544											
MARVELD3	91862	mdanderson.org	37	chr16	71660181	71660181	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgggcccggccgagagagCgggacccgggacggcgcccc	18	18	0	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_052858	exon1	c.C49T	p.R17W	AGAGAGCGGGACC		18	2	0.11	25	0	0				1	0	0				T	71660181	C	T	71660181	3	4	24	1	0	0	0	0	1	0	0	0	9368	759	27	1	51	1	MARVELD3	16	71660181	Missense_Mutation	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	48090633	71660181	18694572	64	1545											
PITPNA	5306	mdanderson.org	37	chr17	1451640	1451640	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttctcgtgtatattcaggGctccctctggggccagcatt	10	12	3	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_006224	exon4	c.C239T	p.A80V	TTCAGGGCTCCCT		44	3	0.07	53	0	0				77	0	0				A	1451640	G	A	1451640	3	1	24	1	0	0	0	0	1	0	0	0	11994	1203	42	2	605	2	PITPNA	17	1451640	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10		1451640	79743570	65	1546											
CCDC144B	284047	hgsc.bcm.edu	37	chr17	18446965	18446965	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atattacttaatcaatttaaTtcataaattttggtaacata	2	4	2	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	.	.	.	.	ATTTAATTCATAA		180	46	0.26	214	0	0				0	0					A	18446965	T	A	18446965	1	1	24	0	1	0	0	0	0	0	0	0	2796	1508	52	5		5	CCDC144B	17	18446965	RNA	SNP	T	TCGA-2G-AAG9-01A-11D-A42Y-10	16995325	18446965	62748245	66	1547											
NEUROD2	4761	mdanderson.org	37	chr17	37761788	37761788	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgtaagacaagagattctcCgagtggacgcccccgcgcac	11	14	1	2	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_006160	exon2	c.G1065A	p.S355S	ATTCTCCGAGTGG		64	3	0.05	73	0	0				1	0	0				T	37761788	C	T	37761788	2	4	24	1	0	0	0	0	0	0	0	1	10395	639	23	1		1	NEUROD2	17	37761788	Silent	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	19314823	37761788	43433422	67	1548											
HAP1	9001	mdanderson.org	37	chr17	39884463	39884463	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgactcaccatccggcagCgctgctgcagcttcagcacc	9	19	2	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001079870	exon7	c.G1214A	p.R405H	CGGCAGCGCTGCT		42	3	0.07	33	0	0				4	0	0				T	39884463	C	T	39884463	3	4	24	1	0	0	0	0	1	0	0	0	6993	768	27	1	689	1	HAP1	17	39884463	Missense_Mutation	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	2122675	39884463	41310747	68	1549											
HOXB4	3214	mdanderson.org	37	chr17	46655452	46655452	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcggcgggggtggtggcGgaggcggcgggggcccaggg	29	8	0	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_024015	exon1	c.C230A	p.P77Q	GGTGGCGGAGGCG		18	2	0.11	21	0	0				0	0					T	46655452	G	T	46655452	3	4	24	1	0	0	0	0	1	0	0	0	7343	1116	39	1	533	1	HOXB4	17	46655452	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	6770989	46655452	34539758	69	1550											
PPM1E	22843	mdanderson.org	37	chr17	56833708	56833708	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcactcggccgtgccgccgcCgccgccccagctgccgcctt	12	22	0	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_014906	exon1	c.C350T	p.P117L	CGCCGCCGCCGCC		30	2	0.07	41	0	0				0	0					T	56833708	C	T	56833708	3	4	24	1	0	0	0	0	1	0	0	0	12386	652	23	1	352	1	PPM1E	17	56833708	Missense_Mutation	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	10178256	56833708	24361502	70	1551											
AATK	9625	mdanderson.org	37	chr17	79094597	79094597	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccggggccagagccttgtgCctccccggaaaccccaggcc	12	19	0	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001080395	exon11	c.G3139A	p.A1047T	CTTGTGCCTCCCC		45	4	0.09	44	0	0				1	0	0				T	79094597	C	T	79094597	3	4	24	1	0	0	0	0	1	0	0	0	26	739	26	2	1001	2	AATK	17	79094597	Missense_Mutation	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	22260889	79094597	2100613	71	1552											
NCLN	56926	mdanderson.org	37	chr19	3193320	3193320	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccggagatgctggccatggaGaccgccgtccccgtgtactt	13	14	0	2	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_020170	exon3	c.G414T	p.E138D	CATGGAGACCGCC		29	3	0.1	39	0	0				104	0	0				T	3193320	G	T	3193320	3	4	24	1	0	0	0	0	1	0	0	0	10273	933	33	3	424	3	NCLN	19	3193320	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10		3193320	55935663	72	1553											
ZNF490	57474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	12692507	12692507	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccacatggacaatcttcttTattttcacagagtgcttcaa	5	10	4	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	ZNF490,NS,carcinoma,+2,1	ZNF490	NM_020714	exon5	c.A382G	p.K128E	CTTCTTTATTTTC		108	17	0.16	70	0	0		2	1	45	20	0.44				C	12692507	T	C	12692507	3	2	24	1	0	0	0	0	1	0	0	0	17997	1763	61	4	1211	4	ZNF490	19	12692507	Missense_Mutation	SNP	T	TCGA-2G-AAG9-01A-11D-A42Y-10	9499187	12692507	46436476	73	1554											
FOSB	2354	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	45971880	45971880	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cccggagactacgactccggCtcccggtgcagctcctcacc	10	19	1	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	FOSB	NM_001114171	exon1	c.C36A	p.G12G	CTCCGGCTCCCGG		84	5	0.06	94	0	0		29		2	0	0				A	45971880	C	A	45971880	2	1	24	1	0	0	0	0	0	0	0	1	6018	784	28	2		2	FOSB	19	45971880	Silent	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	33279373	45971880	13157103	74	1555											
SIX5	147912	mdanderson.org	37	chr19	46269313	46269313	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgatcttgccctgctgcaGggccacacccgtcacgatgg	12	14	2	1	rs2014377	bycluster;byfrequency;by2hit2allele;by1000genomes;alternate_allele	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_175875	exon3	c.C1666A	p.L556M	GCTGCAGGGCCAC		110	3	0.03	92	0	0				53	0	0				T	46269313	G	T	46269313	3	4	24	1	0	0	0	0	1	0	0	0	14404	991	35	3	557	3	SIX5	19	46269313	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	297433	46269313	12859670	75	1556											
DMPK	1760	mdanderson.org	37	chr19	46274631	46274631	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaggtggatccgtggcccGgggactggggacccccgtga	19	11	0	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001081563	exon12	c.C1654A	p.R552R	TGGCCCGGGGACT		47	3	0.06	50	0	0				85	0	0				T	46274631	G	T	46274631	2	4	24	1	0	0	0	0	0	0	0	1	4612	1115	39	1		1	DMPK	19	46274631	Silent	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	5318	46274631	12854352	76	1557											
SHANK1	50944	broad.mit.edu	37	chr19	51215270	51215270	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctgttgaacaggagcagCtcgcagcatcgggggtcacc	14	13	1	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	SHANK1	NM_016148	exon6	c.G894T	p.E298D	GAGCAGCTCGCAG		104	6	0.06	98	1	0.0102040816		210		3	0	0				A	51215270	C	A	51215270	3	1	24	1	0	0	0	0	1	0	0	0	14318	796	28	2	5663	2	SHANK1	19	51215270	Missense_Mutation	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	4940639	51215270	7913713	77	1558											
KLK10	5655	mdanderson.org	37	chr19	51519206	51519206	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggctgagcacagcggtagGgaagctgcagggcccggacg	19	11	0	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_145888	exon4	c.C476A	p.P159H	CGGTAGGGAAGCT		35	3	0.09	25	0	0				2	0	0				T	51519206	G	T	51519206	3	4	24	1	0	0	0	0	1	0	0	0	8440	1232	43	3	366	3	KLK10	19	51519206	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	303936	51519206	7609777	78	1559											
ZNF480	147657	broad.mit.edu;mdanderson.org	37	chr19	52817472	52817472	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggaaatgcctggaccctGcacagagggctttatacaag	12	9	0	1	rs200373642	alternate_allele	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	ZNF480	NM_144684	exon3	c.G139T	p.A47S	GACCCTGCACAGA		92	4	0.04	72	0	0		123		87	0	0				T	52817472	G	T	52817472	3	4	24	1	0	0	0	0	1	0	0	0	17991	1319	46	2	145	2	ZNF480	19	52817472	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	1298266	52817472	6311511	79	1560											
RDH13	112724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	55559896	55559896	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgtccagcagcaagtttgtCaagagaaagtgacctggatt	11	7	1	2	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	RDH13_ENST00000415061,colon,carcinoma,-1,2	RDH13_ENST00000415061	NM_001145971	exon5	c.G459C	p.L153F	GTTTGTCAAGAGA		92	21	0.23	69	0	0		-1	2	26	7	0.27				G	55559896	C	G	55559896	3	3	24	1	0	0	0	0	1	0	0	0	13243	825	29	5	548	5	RDH13	19	55559896	Missense_Mutation	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	2742424	55559896	3569087	80	1561											
ZFP28	140612	mdanderson.org	37	chr19	57050578	57050578	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagcgaggagcggcccctaCggggcctgggcacagaggtg	18	13	0	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_020828	exon1	c.C191T	p.T64M	CCCCTACGGGGCC		26	3	0.12	13	0	0				7	0	0				T	57050578	C	T	57050578	3	4	24	1	0	0	0	0	1	0	0	0	17699	536	19	1	193	1	ZFP28	19	57050578	Missense_Mutation	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	1490682	57050578	2078405	81	1562											
THBD	7056	mdanderson.org	37	chr20	23028597	23028597	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatgcctatgagcaagccCgaatgcacgagccccacggc	12	14	0	2	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_000361	exon1	c.G1545T	p.S515S	CAAGCCCGAATGC		56	4	0.07	50	0	0				3	0	0				A	23028597	C	A	23028597	2	1	24	1	0	0	0	0	0	0	0	1	15911	639	23	1		1	THBD	20	23028597	Silent	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10		23028597	39996923	82	1563											
RALY	22913	broad.mit.edu	37	chr20	32664877	32664877	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggcgccggcggcggcggCggtggtggtggcagcggtgg	26	9	0	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	RALY	NM_016732	exon8	c.C702T	p.G234G	CGGCGGCGGTGGT		85	5	0.06	87	0	0		44		231	0	0				T	32664877	C	T	32664877	2	4	24	1	0	0	0	0	0	0	0	1	13070	755	27	1		1	RALY	20	32664877	Silent	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	9636280	32664877	30360643	83	1564											
CSE1L	1434	mdanderson.org	37	chr20	47691377	47691377	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtacataaggagagatttGgaaggatctggtgtgtatct	14	3	2	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001316	exon11	c.G1122T	p.L374F	AGATTTGGAAGGA		113	5	0.04	115	1	0.0086956522				315	0	0				T	47691377	G	T	47691377	3	4	24	1	0	0	0	0	1	0	0	0	3955	1339	47	3	1160	3	CSE1L	20	47691377	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	15026500	47691377	15334143	84	1565											
CTSZ	1522	mdanderson.org	37	chr20	57581505	57581505	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagctcttgggcagatccGctggggacaggtactcatga	13	12	2	2	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001336	exon2	c.C179T	p.A60V	AGATCCGCTGGGG		46	3	0.07	61	0	0				1152	1	0				A	57581505	G	A	57581505	3	1	24	1	0	0	0	0	1	0	0	0	4067	1087	38	1	752	1	CTSZ	20	57581505	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	9890128	57581505	5444015	85	1566											
PPP1R3D	5509	broad.mit.edu	37	chr20	58514308	58514308	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccgtgccctcggggcctgCgggcccgcgccaccgcgcca	14	21	0	0	rs374884643		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	PPP1R3D,NS,carcinoma,0,2	PPP1R3D	NM_006242	exon1	c.G679A	p.A227T	GGCCTGCGGGCCC		83	3	0.04	83	1	0.0120481928		23	2	8	0	0				T	58514308	C	T	58514308	3	4	24	1	0	0	0	0	1	0	0	0	12422	768	27	1	224	1	PPP1R3D	20	58514308	Missense_Mutation	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	932803	58514308	4511212	86	1567											
TCEA2	6919	mdanderson.org	37	chr20	62701120	62701120	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cagggctccctcttgcagatGaccacgtggccatcggtgcg	13	14	1	2	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_003195	exon6	c.G463T	p.D155Y	GCAGATGACCACG		39	3	0.08	65	0	0				27	0	0				T	62701120	G	T	62701120	3	4	24	1	0	0	0	0	1	0	0	0	15727	1290	45	3	485	3	TCEA2	20	62701120	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	4186812	62701120	324400	87	1568											
TTC3	7267	broad.mit.edu	37	chr21	38507753	38507753	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccttattggagcagcgttGccgcagcgctgcacaggcct	14	13	0	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	TTC3	NM_001001894	exon18	c.G1517T	p.C506F	AGCGTTGCCGCAG		333	4	0.01	263	1	0.0038022814		182		11	0	0				T	38507753	G	T	38507753	3	4	24	1	0	0	0	0	1	0	0	0	16758	1319	46	2	1583	2	TTC3	21	38507753	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10		38507753	9622142	88	1569											
CARD10	29775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	37891566	37891566	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cggctggagggcaggcatttCtcctgaacttctaggagctg	14	10	2	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_014550	exon15	c.G2331A	p.E777E	GCATTTCTCCTGA		62	16	0.26	59	0	0				48	15	0.31				T	37891566	C	T	37891566	2	4	24	1	0	0	0	0	0	0	0	1	2662	912	32	3		3	CARD10	22	37891566	Silent	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10		37891566	13413000	89	1570											
EFCAB6	64800	mdanderson.org	37	chr22	44079680	44079680	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcagagtgatcttcagtgtGtctaaataactttgtgatga	10	6	3	4	rs137794	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_022785	exon12	c.C1198A	p.H400N	CAGTGTGTCTAAA		69	4	0.06	85	0	0				0	0					T	44079680	G	T	44079680	3	4	24	1	0	0	0	0	1	0	0	0	4965	1377	48	3	3391	3	EFCAB6	22	44079680	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	6188114	44079680	7224886	90	1571											
CELSR1	9620	broad.mit.edu	37	chr22	46804955	46804955	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaacgctgtcctccttccGggtccggaacatgagcccca	10	16	0	2	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	CELSR1	NM_014246	exon9	c.C5164A	p.R1722R	CCTTCCGGGTCCG		126	4	0.03	101	0	0		242		5	0	0				T	46804955	G	T	46804955	2	4	24	1	0	0	0	0	0	0	0	1	3243	1115	39	1		1	CELSR1	22	46804955	Silent	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	2725275	46804955	4499611	91	1572											
PPP2R3B	28227	mdanderson.org	37	chrX	306965	306965	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcctgccggaccaggaccGgttcacggcgtagaagatcc	13	13	1	2	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_013239	exon6	c.C823A	p.R275R	AGGACCGGTTCAC		44	3	0.07	41	0	0				54	0	0				T	306965	G	T	306965	2	4	24	1	0	0	0	0	0	0	0	1	12437	1115	39	1		1	PPP2R3B	23	306965	Silent	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10		306965	154963595	92	1573											
NHS	4810	broad.mit.edu	37	chrX	17745674	17745674	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaggtccatcaacaagtctGaagaagttaagcaaaaagaa	8	6	2	3	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	NHS	NM_198270	exon6	c.G3385T	p.E1129X	AAGTCTGAAGAAG		197	6	0.03	149	0	0		302		1	0	0				T	17745674	G	T	17745674	4	4	24	1	0	0	0	0	0	1	0	0	10457	1291	45	3	3512	3	NHS	23	17745674	Nonsense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	17438709	17745674	137524886	93	1574											
LANCL3	347404	broad.mit.edu	37	chrX	37431145	37431145	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggacaccaagcgctgcttcGccaatcgcttcgatgactac	9	14	0	1	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	LANCL3	NM_001170331	exon1	c.G22A	p.A8T	TGCTTCGCCAATC		62	3	0.05	46	0	0		42		4	0	0				A	37431145	G	A	37431145	3	1	24	1	0	0	0	0	1	0	0	0	8660	1087	38	1	24	1	LANCL3	23	37431145	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	19685471	37431145	117839415	94	1575											
USP11	8237	broad.mit.edu	37	chrX	47092516	47092516	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agcggcggtgactgaggataGagagccacagcacgaggagc	17	9	0	3	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	USP11	NM_004651	exon1	c.G203T	p.R68I	AGGATAGAGAGCC		72	3	0.04	74	0	0		93		12	0	0				T	47092516	G	T	47092516	3	4	24	1	0	0	0	0	1	0	0	0	17101	942	33	3	205	3	USP11	23	47092516	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	9661371	47092516	108178044	95	1576											
PIM2	11040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	48772441	48772441	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acgggaatggcagtgctggaTggctgccactacttggccaa	14	10	0	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_006875	exon4	c.A451C	p.I151L	GCTGGATGGCTGC		173	62	0.36	128	0	0				1386	691	0.5				G	48772441	T	G	48772441	3	3	24	1	0	0	0	0	1	0	0	0	11975	1464	51	4	496	4	PIM2	23	48772441	Missense_Mutation	SNP	T	TCGA-2G-AAG9-01A-11D-A42Y-10	1679925	48772441	106498119	96	1577											
HEPH	9843	mdanderson.org	37	chrX	65428068	65428068	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctagaatctactactgtctGgccactggctgctgagcctg	11	12	2	2	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_138737	exon15	c.G2705T	p.W902L	CTGTCTGGCCACT		45	3	0.07	38	0	0				20	0	0				T	65428068	G	T	65428068	3	4	24	1	0	0	0	0	1	0	0	0	7094	1357	47	3	2763	3	HEPH	23	65428068	Missense_Mutation	SNP	G	TCGA-2G-AAG9-01A-11D-A42Y-10	16655627	65428068	89842492	97	1578											
GPC3	2719	broad.mit.edu;bcgsc.ca	37	chrX	133119396	133119396	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggcgtccggcggcggcggCgggggctgcgcctgtcccgg	22	14	0	0	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	GPC3	NM_001164617	exon1	c.G81C	p.P27P	CGGCGGCGGGGGC		124	6	0.05	125	1	0.008		88		1	0	0				G	133119396	C	G	133119396	2	3	24	1	0	0	0	0	0	0	0	1	6638	755	27	5		5	GPC3	23	133119396	Silent	SNP	C	TCGA-2G-AAG9-01A-11D-A42Y-10	67691328	133119396	22151164	98	1579											
CELA2B	51032	broad.mit.edu	37	chr1	15813823	15813823	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcaggcatctgacggccGgtgggaggtgcatggcatcg	17	10	2	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	CELA2B	NM_015849	exon7	c.G683A	p.R228Q	ACGGCCGGTGGGA		99	4	0.04	90	0	0		37		0	0					A	15813823	G	A	15813823	3	1	25	1	0	0	0	0	1	0	0	0	3234	1116	39	1	709	1	CELA2B	1	15813823	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10		15813823	233436798	1	1580											
ASAP3	55616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	23763670	23763670	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tattcccaggcctgctcttcAcctccgcgatgagcagcttt	8	15	2	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_017707	exon14	c.T1295C	p.V432A	CTCTTCACCTCCG		122	15	0.12	120	0	0				45	9	0.2				G	23763670	A	G	23763670	3	3	25	1	0	0	0	0	1	0	0	0	1011	159	6	4	1464	4	ASAP3	1	23763670	Missense_Mutation	SNP	A	TCGA-2G-AAGA-01A-11D-A42Y-10	7949847	23763670	225486951	2	1581											
PDIK1L	149420	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	26441057	26441057	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	atggtgcaaaagatgtcccaCggctctaattcttcccttta	7	11	2	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_001243532	exon2	c.C258G	p.H86Q	GTCCCACGGCTCT		104	8	0.08	87	0	0				6	1	0.17				G	26441057	C	G	26441057	3	3	25	1	0	0	0	0	1	0	0	0	11719	535	19	5	260	5	PDIK1L	1	26441057	Missense_Mutation	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10	2677387	26441057	222809564	3	1582											
WDTC1	23038	broad.mit.edu	37	chr1	27632718	27632718	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcgtggaagatatggagggTgcttcacaggccaaccagcg	15	9	1	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	WDTC1	NM_001276252	exon16	c.T1878G	p.G626G	GGAGGGTGCTTCA		110	10	0.09	101	6	0.0594059406		69		102	5	0.05				G	27632718	T	G	27632718	2	3	25	1	0	0	0	0	0	0	0	1	17401	1683	59	4		4	WDTC1	1	27632718	Silent	SNP	T	TCGA-2G-AAGA-01A-11D-A42Y-10	1191661	27632718	221617903	4	1583											
LRP8	7804	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	53724042	53724042	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacattgtgtcaggacaggCacatgtgtacttgggagagt	13	8	1	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_004631	exon14	c.G2158T	p.A720S	GACAGGCACATGT		163	12	0.07	134	0	0				43	2	0.05				A	53724042	C	A	53724042	3	1	25	1	0	0	0	0	1	0	0	0	9007	710	25	2	757	2	LRP8	1	53724042	Missense_Mutation	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10	26091324	53724042	195526579	5	1584											
CELSR2	1952	mdanderson.org	37	chr1	109792751	109792751	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaacgccgccgccgccgcTgctgctgctgttgctgctgc	12	19	0	0	rs200277265		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	CELSR2,colon,carcinoma,0,1	CELSR2	NM_001408	exon1	c.T50C	p.L17P	CGCCGCTGCTGCT		48	3	0.06	33	0	0		0	1	1	0	0				C	109792751	T	C	109792751	3	2	25	1	0	0	0	0	1	0	0	0	3244	1580	55	4	52	4	CELSR2	1	109792751	Missense_Mutation	SNP	T	TCGA-2G-AAGA-01A-11D-A42Y-10	56068709	109792751	139457870	6	1585											
ANKRD35	148741	broad.mit.edu	37	chr1	145560171	145560171	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggctgtggacagcacaggGcatgatgctctgcactatgc	15	10	1	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	ANKRD35	NM_144698	exon8	c.G657T	p.G219G	CACAGGGCATGAT		153	4	0.03	184	0	0		96		0	0					T	145560171	G	T	145560171	2	4	25	1	0	0	0	0	0	0	0	1	659	1190	42	2		2	ANKRD35	1	145560171	Silent	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	35767420	145560171	103690450	7	1586											
CR1	1378	broad.mit.edu	37	chr1	207751340	207751340	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gatcaagtgggcatctggagCggccccgcccctcagtgcat	13	14	3	0	rs113578474	bycluster;alternate_allele	TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	CR1	NM_000651	exon29	c.C4728G	p.S1576R	CTGGAGCGGCCCC		401	5	0.01	487	1	0.0020533881		354		0	0					G	207751340	C	G	207751340	3	3	25	1	0	0	0	0	1	0	0	0	3863	767	27	5	4842	5	CR1	1	207751340	Missense_Mutation	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10	62191169	207751340	41499281	8	1587											
APOB	338	mdanderson.org	37	chr2	21234845	21234845	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cactattaattttgtcagtgCctaagatgtcagcatttaac	6	8	2	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_000384	exon26	c.G4895C	p.G1632A	TCAGTGCCTAAGA		49	3	0.06	47	0	0				0	0					G	21234845	C	G	21234845	3	3	25	1	0	0	0	0	1	0	0	0	782	739	26	5	8812	5	APOB	2	21234845	Missense_Mutation	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10		21234845	221964528	9	1588											
EDAR	10913	broad.mit.edu	37	chr2	109527398	109527398	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcaccggcgcatgggggccGtcacctggggcagagggctt	19	12	1	1	rs191975348	bycluster;by1000genomes	TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	EDAR	.	.	.	.	GGGGCCGTCACCT		172	6	0.03	180	0	0		49		0	0					A	109527398	G	A	109527398	2	1	25	1	0	0	0	0	0	0	0	1	4931	1160	40	1		1	EDAR	2	109527398	Silent	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	88292553	109527398	133671975	10	1589											
RIF1	55183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	152320914	152320914	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaacaagatgaaagtaataCtgtaatatgtcaggattcta	7	4	2	2	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_018151	exon30	c.C4880G	p.T1627S	GTAATACTGTAAT		88	24	0.27	112	0	0				70	22	0.31				G	152320914	C	G	152320914	3	3	25	1	0	0	0	0	1	0	0	0	13408	565	20	5	4994	5	RIF1	2	152320914	Missense_Mutation	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10	42793516	152320914	90878459	11	1590											
NUP210	23225	broad.mit.edu	37	chr3	13395547	13395547	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgaagttgtcgaaccggcGgccctcctggtcgtaagcag	14	12	0	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	NUP210	NM_024923	exon17	c.C2389T	p.R797C	ACCGGCGGCCCTC		130	4	0.03	173	0	0		182		27	0	0				A	13395547	G	A	13395547	3	1	25	1	0	0	0	0	1	0	0	0	10807	1116	39	1	3370	1	NUP210	3	13395547	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10		13395547	184626883	12	1591											
MUC4	4585	broad.mit.edu;mdanderson.org	37	chr3	195509308	195509308	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tggcgtgacctgtggatgctGaggaagtgtcggtgacagga	18	6	0	3	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	MUC4	NM_018406	exon2	c.C9143T	p.S3048L	GATGCTGAGGAAG		88	5	0.06	100	1	0.01		1505		20	1	0.05				A	195509308	G	A	195509308	3	1	25	1	0	0	0	0	1	0	0	0	10025	1294	45	3		3	MUC4	3	195509308	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	182113761	195509308	2513122	13	1592											
RGS12	6002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	3319118	3319118	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggcccgcgcctttctggaCggggacgccgatgcccacca	14	17	1	0	rs372019148		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_002926	exon2	c.C1221T	p.D407D	TCTGGACGGGGAC		57	14	0.25	113	0	0				4	1	0.25				T	3319118	C	T	3319118	2	4	25	1	0	0	0	0	0	0	0	1	13344	535	19	1		1	RGS12	4	3319118	Silent	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10		3319118	187835158	14	1593											
PACRGL	133015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	20706400	20706400	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcaagaaaacttcatcctaGaccaagtgataaactgaacc	6	10	1	4	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_001258345	exon3	c.G170C	p.R57T	ATCCTAGACCAAG		126	32	0.25	220	0	0				38	10	0.26				C	20706400	G	C	20706400	3	2	25	1	0	0	0	0	1	0	0	0	11417	942	33	5	176	5	PACRGL	4	20706400	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	17387282	20706400	170447876	15	1594											
KCTD8	386617	broad.mit.edu	37	chr4	44177058	44177058	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	aggtgcttttttagaggggcGatccaatgttaaagtgttag	13	4	0	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	KCTD8,caecum,carcinoma,+1,1	KCTD8	NM_198353	exon2	c.C1171A	p.R391S	AGGGGCGATCCAA		107	4	0.04	120	0	0		96	1	0	0					T	44177058	G	T	44177058	3	4	25	1	0	0	0	0	1	0	0	0	8158	1058	37	1	254	1	KCTD8	4	44177058	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	23470658	44177058	146977218	16	1595											
TRAM1L1	133022	broad.mit.edu	37	chr4	118006429	118006429	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ggatgcttctgctgttccctCgaacacaagccccagcagga	10	14	1	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	TRAM1L1	NM_152402	exon1	c.G121C	p.E41Q	TTCCCTCGAACAC		94	4	0.04	126	0	0		55		8	0	0				G	118006429	C	G	118006429	3	3	25	1	0	0	0	0	1	0	0	0	16512	893	31	5	992	5	TRAM1L1	4	118006429	Missense_Mutation	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10	73829371	118006429	73147847	17	1596											
BBS7	55212	mdanderson.org	37	chr4	122770033	122770033	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accacgatttcatcatagctGtcttttcctacacaaccacc	3	15	3	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_018190	exon9	c.C900A	p.D300E	ATAGCTGTCTTTT		39	3	0.08	79	0	0				15	0	0				T	122770033	G	T	122770033	3	4	25	1	0	0	0	0	1	0	0	0	1339	1368	48	3	1296	3	BBS7	4	122770033	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	4763604	122770033	68384243	18	1597											
SDHA	6389	bcgsc.ca	37	chr5	236628	236628	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgcctcggtacatggtgCcaaccgcctcggggcaaact	12	14	0	0	rs201139275	bycluster;byfrequency	TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	SDHA	NM_004168	exon10	c.C1346T	p.A449V	ATGGTGCCAACCG		101	9	0.09	150	2	0.0133333333		80		215	0	0				T	236628	C	T	236628	3	4	25	1	0	0	0	0	1	0	0	0	14016	739	26	2	1384	2	SDHA	5	236628	Missense_Mutation	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10		236628	180678632	19	1598											
HSPA9	3313	hgsc.bcm.edu;ucsc.edu	37	chr5	137902698	137902699	+	Missense_Mutation	DNP	TG	TG	GT													ttggtaactcacctctctctTgaactccttcacaatgtgcc					novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	TG	TG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_004134	exon8	c.C870A	p.FK290LQ	CTCTCTTGAACTC		247	29	0.12	228	0	0	0.001			1445	0	0				GT	137902699	TG	GT	137902698	3	3	25	1	0	0	0	0	1	0	0	0	7459	1821	63	4	1208	4	HSPA9	5	137902698	Missense_Mutation	DNP	TG	TCGA-2G-AAGA-01A-11D-A42Y-10	137666070	137902698	43012562	20	1599											
ZNF346	23567	mdanderson.org	37	chr5	176449808	176449808	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgggccttacagcagctcGgagttgctggagggccagga	17	11	0	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_012279	exon1	c.G69T	p.S23S	CAGCTCGGAGTTG		21	2	0.1	16	0	0				14	0	0				T	176449808	G	T	176449808	2	4	25	1	0	0	0	0	0	0	0	1	17916	1103	39	1		1	ZNF346	5	176449808	Silent	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	38547110	176449808	4465452	21	1600											
SQSTM1	8878	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	179250972	179250972	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggcctgtggtaggaacccGctacaagtgcagcgtctgcc	14	12	1	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	SQSTM1	NM_003900	exon3	c.G416A	p.R139H	GAACCCGCTACAA		64	5	0.08	59	0	0		30		371	1	0				A	179250972	G	A	179250972	3	1	25	1	0	0	0	0	1	0	0	0	15185	1087	38	1	426	1	SQSTM1	5	179250972	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	2801164	179250972	1664288	22	1601											
TTBK1	84630	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	43230837	43230837	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aggagctgcggccactgcccGaggagggcgaagagcggcgg	20	11	0	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_032538	exon13	c.G1735A	p.E579K	CTGCCCGAGGAGG		130	8	0.06	106	0	0				0	0					A	43230837	G	A	43230837	3	1	25	1	0	0	0	0	1	0	0	0	16737	1059	37	1	1781	1	TTBK1	6	43230837	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10		43230837	127884230	23	1602											
FBXL4	26235	broad.mit.edu	37	chr6	99323347	99323347	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgccaattcatcaatgtctGtgtcacacacagatctatta	5	10	5	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	FBXL4	NM_012160	exon8	c.C1646A	p.T549K	ATGTCTGTGTCAC		99	3	0.03	97	0	0		54		27	0	0				T	99323347	G	T	99323347	3	4	25	1	0	0	0	0	1	0	0	0	5753	1377	48	3	227	3	FBXL4	6	99323347	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	56092510	99323347	71791720	24	1603											
SHPRH	257218	broad.mit.edu	37	chr6	146256416	146256416	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacttattgtactgacttGgtcaatcacatctttctttg	5	8	4	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	SHPRH	NM_173082	exon12	c.C2731A	p.Q911K	TGACTTGGTCAAT		85	3	0.04	91	0	0		169		17	0	0				T	146256416	G	T	146256416	3	4	25	1	0	0	0	0	1	0	0	0	14345	1357	47	3	2440	3	SHPRH	6	146256416	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	46933069	146256416	24858651	25	1604											
GRM1	2911	mdanderson.org	37	chr6	146755748	146755748	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggaggacctgcaggcggCcagcaaactgaccccggatg	16	12	0	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_000838	exon9	c.C3401T	p.A1134V	AGGCGGCCAGCAA		22	2	0.09	55	0	0				0	0					T	146755748	C	T	146755748	3	4	25	1	0	0	0	0	1	0	0	0	6836	739	26	2	3496	2	GRM1	6	146755748	Missense_Mutation	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10	499332	146755748	24359319	26	1605											
SP8	221833	mdanderson.org	37	chr7	20824970	20824970	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgcccccgccgccgccgcCgctgcccccggaaactccgg	12	24	0	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_182700	exon2	c.G466A	p.G156S	CGCCGCCGCTGCC		57	3	0.05	40	0	0				4	2	0.5				T	20824970	C	T	20824970	3	4	25	1	0	0	0	0	1	0	0	0	15023	652	23	1	1064	1	SP8	7	20824970	Missense_Mutation	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10		20824970	138313693	27	1606											
SP4	6671	broad.mit.edu	37	chr7	21468306	21468306	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgttgcagatcagaagaagGaggaggaggaggaggcggca	19	4	1	3	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	SP4,colon,carcinoma,0,1	SP4	NM_003112	exon2	c.G19A	p.E7K	AAGAAGGAGGAGG		79	3	0.04	66	0	0		91	1	1	0	0				A	21468306	G	A	21468306	3	1	25	1	0	0	0	0	1	0	0	0	15019	1175	41	3	25	3	SP4	7	21468306	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	643336	21468306	137670357	28	1607											
ORAI2	80228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	102087325	102087325	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacacgggctggcaggccgcCctggtgtccaccatcatcat	11	16	2	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_032831	exon3	c.C591T	p.A197A	GGCCGCCCTGGTG		75	20	0.27	61	0	0				13	5	0.38				T	102087325	C	T	102087325	2	4	25	1	0	0	0	0	0	0	0	1	11304	610	22	3		3	ORAI2	7	102087325	Silent	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10	80619019	102087325	57051338	29	1608											
SLC13A4	26266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	135406263	135406263	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acgatcagcacgtaagcacaCgaggcctcctgcaaggcaag	11	13	1	0	rs370307347		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_012450	exon2	c.G108A	p.S36S	AGCACACGAGGCC		426	75	0.18	341	0	0				1	0	0				T	135406263	C	T	135406263	2	4	25	1	0	0	0	0	0	0	0	1	14448	523	19	1		1	SLC13A4	7	135406263	Silent	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10	33318938	135406263	23732400	30	1609											
LZTS1	11178	mdanderson.org	37	chr8	20107717	20107717	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtgcgcagggcgccctccAggtcctgggtcctcagctcc	14	16	1	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_021020	exon3	c.T1307C	p.L436P	CCCTCCAGGTCCT		46	3	0.07	55	0	0				30	0	0				G	20107717	A	G	20107717	3	3	25	1	0	0	0	0	1	0	0	0	9183	188	7	4	487	4	LZTS1	8	20107717	Missense_Mutation	SNP	A	TCGA-2G-AAGA-01A-11D-A42Y-10		20107717	126256305	31	1610											
AGPAT6	137964	broad.mit.edu	37	chr8	41478445	41478445	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagagggagaaggtgaaggaCacgttcaaggaggagcagca	17	5	1	3	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	AGPAT6	NM_178819	exon13	c.C1296T	p.D432D	GAAGGACACGTTC		240	5	0.02	218	0	0		32		387	18	0.05	rescued with RNA-seq			T	41478445	C	T	41478445	2	4	25	1	0	0	0	0	0	0	0	1	388	477	17	3		3	AGPAT6	8	41478445	Silent	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10	21370728	41478445	104885577	32	1611											
POLB	5423	broad.mit.edu	37	chr8	42210059	42210059	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catctgctgcaaggaagtttGtagatgaaggaattaaaaca	10	5	1	2	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	POLB	NM_002690	exon6	c.G343T	p.V115L	AAGTTTGTAGATG		110	3	0.03	102	0	0		60		108	0	0				T	42210059	G	T	42210059	3	4	25	1	0	0	0	0	1	0	0	0	12236	1377	48	3	365	3	POLB	8	42210059	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	731614	42210059	104153963	33	1612											
FNTA	2339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr8	42940420	42940420	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actcaccaacaaatgtacagCaataacaccatccagaagaa	4	12	1	2	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	FNTA,NS,carcinoma,-1,1	FNTA	NM_002027	exon9	c.C1135T	p.Q379X	GTACAGCAATAAC		297	59	0.2	281	0	0		-1	1	387	80	0.21				T	42940420	C	T	42940420	4	4	25	1	0	0	0	0	0	1	0	0	6009	711	25	2	1169	2	FNTA	8	42940420	Nonsense_Mutation	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10	730361	42940420	103423602	34	1613											
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	77761779	77761779	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tccttattgtaactacaataGtagggaccaaagtcgtatcc	7	9	0	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_024721	exon8	c.G3677C	p.S1226T	ACAATAGTAGGGA		102	9	0.09	104	0	0				0	0					C	77761779	G	C	77761779	3	2	25	1	0	0	0	0	1	0	0	0	17692	1029	36	5	3703	5	ZFHX4	8	77761779	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	34821359	77761779	68602243	35	1614											
STK3	6788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	99608285	99608285	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagttgtgttgcagtagctCtctgctcaggattcttcacc	9	10	4	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_001256312	exon9	c.G881T	p.R294I	GTAGCTCTCTGCT		185	35	0.19	190	0	0				33	2	0.06				A	99608285	C	A	99608285	3	1	25	1	0	0	0	0	1	0	0	0	15350	913	32	3	698	3	STK3	8	99608285	Missense_Mutation	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10	21846506	99608285	46755737	36	1615											
RNF139	11236	mdanderson.org	37	chr8	125499847	125499847	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atggagtgattcagcacacaGgcgcagcagctgaagaattt	12	8	1	3	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_007218	exon2	c.G1957T	p.G653C	CACACAGGCGCAG		49	3	0.06	52	0	0				257	0	0				T	125499847	G	T	125499847	3	4	25	1	0	0	0	0	1	0	0	0	13493	1000	35	3	1963	3	RNF139	8	125499847	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	25891562	125499847	20864175	37	1616											
COL15A1	1306	broad.mit.edu	37	chr9	101797339	101797339	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acctggacccccggggaaaaAgggacaagctggccctcctg	13	14	0	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	COL15A1	NM_001855	exon18	c.A2123G	p.K708R	GGAAAAAGGGACA		104	4	0.04	106	1	0.0094339623		211		62	0	0				G	101797339	A	G	101797339	3	3	25	1	0	0	0	0	1	0	0	0	3695	72	3	4	2193	4	COL15A1	9	101797339	Missense_Mutation	SNP	A	TCGA-2G-AAGA-01A-11D-A42Y-10		101797339	39416092	38	1617											
GTF3C4	9329	mdanderson.org	37	chr9	135553575	135553575	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcactgaccatggacaatcGcctgaccatccaggcaaatc	8	14	0	2	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_012204	exon2	c.G569T	p.R190L	ACAATCGCCTGAC		54	3	0.06	61	0	0				53	0	0				T	135553575	G	T	135553575	3	4	25	1	0	0	0	0	1	0	0	0	6915	1087	38	1	575	1	GTF3C4	9	135553575	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	33756236	135553575	5659856	39	1618											
NDOR1	27158	mdanderson.org	37	chr9	140109564	140109564	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taggtgctctgtgacttcccGcacacagctgccgccatccc	9	17	1	1	rs145912724		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_001144026	exon9	c.G1083A	p.P361P	CTTCCCGCACACA		52	3	0.06	56	0	0	0			89	0	0				A	140109564	G	A	140109564	2	1	25	1	0	0	0	0	0	0	0	1	10295	1074	38	1		1	NDOR1	9	140109564	Silent	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	4555989	140109564	1103867	40	1619											
USP54	159195	hgsc.bcm.edu	37	chr10	75279658	75279658	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catgcgatcctgcaggctccGtgcttttcgaatactgattt	9	11	0	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_152586	exon17	c.C2575T	p.R859W	GGCTCCGTGCTTT		83	4	0.05	67	0	0				10	0	0				A	75279658	G	A	75279658	3	1	25	1	0	0	0	0	1	0	0	0	17144	1144	40	1	2503	1	USP54	10	75279658	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10		75279658	60255089	41	1620											
CRTAC1	55118	mdanderson.org	37	chr10	99655119	99655119	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gaccttagctcccctggcaaAggccccaaaccgggtgcgtg	12	15	0	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_001206528	exon11	c.T1369A	p.F457I	TGGCAAAGGCCCC		49	3	0.06	50	0	0				19	0	0				T	99655119	A	T	99655119	3	4	25	1	0	0	0	0	1	0	0	0	3919	72	3	5	636	5	CRTAC1	10	99655119	Missense_Mutation	SNP	A	TCGA-2G-AAGA-01A-11D-A42Y-10	24375461	99655119	35879628	42	1621											
MUC2	4583	mdanderson.org	37	chr11	1092971	1092971	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacggtgaccccaaccccaaCacccaccggcacacagaccc	6	21	0	2	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	MUC2_ENST00000441003,NS,carcinoma,0,1	MUC2_ENST00000441003	NM_002457	exon30	c.C4790T	p.T1597I	CCCCAACACCCAC		16	2	0.13	38	1	0.0263157895		0	1	0	0					T	1092971	C	T	1092971	3	4	25	1	0	0	0	0	1	0	0	0	10022	478	17	3	4908	3	MUC2	11	1092971	Missense_Mutation	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10		1092971	133913545	43	1622											
ZDHHC5	25921	mdanderson.org	37	chr11	57456091	57456091	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccacctgccgcttttaccGtccccctcgatgttcccact	6	19	0	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_015457	exon4	c.G338T	p.R113L	TTTACCGTCCCCC		56	3	0.05	106	0	0				72	0	0				T	57456091	G	T	57456091	3	4	25	1	0	0	0	0	1	0	0	0	17675	1145	40	1	348	1	ZDHHC5	11	57456091	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	56363120	57456091	77550425	44	1623											
LTBP3	4054	broad.mit.edu	37	chr11	65325326	65325328	+	In_Frame_Del	DEL	CAG	CAG	-													tcgaccctgccgcccaggccCagcagcagcagcagcagcag					novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	CAG	CAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	LTBP3	NM_001130144	exon1	c.103_105del	p.35_35del	CAGGCCCAGCAGC		6	2	0.33	10	0	0		55		0	0					-	65325328	CAG	-	65325326	7	5	25	1	0	1	0	1	0	0	0	0	9119	581	21	0	3918	0	LTBP3	11	65325326	In_Frame_Del	DEL	CAG	TCGA-2G-AAGA-01A-11D-A42Y-10	7869235	65325326	69681190	45	1624											
RIN1	9610	broad.mit.edu	37	chr11	66103323	66103323	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cagggcctggcactggcgggTgttagatttccgcacgagga	16	10	0	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	RIN1	NM_004292	exon3	c.A292C	p.T98P	GGCGGGTGTTAGA		47	15	0.32	47	7	0.1489361702		64		4	0	0				G	66103323	T	G	66103323	3	3	25	1	0	0	0	0	1	0	0	0	13422	1696	59	4	2091	4	RIN1	11	66103323	Missense_Mutation	SNP	T	TCGA-2G-AAGA-01A-11D-A42Y-10	777997	66103323	68903193	46	1625											
EXPH5	23086	broad.mit.edu	37	chr11	108381652	108381652	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagactctctaagtttgGttcatctgactgagtctcct	8	11	4	3	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	EXPH5	NM_015065	exon6	c.C4582A	p.P1528T	AGTTTGGTTCATC		99	4	0.04	131	3	0.0229007634		193		0	0					T	108381652	G	T	108381652	3	4	25	1	0	0	0	0	1	0	0	0	5350	1261	44	3	1391	3	EXPH5	11	108381652	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	42278329	108381652	26624864	47	1626											
ST3GAL4	6484	broad.mit.edu;mdanderson.org	37	chr11	126276436	126276436	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtattccatctcccgggaaGacaggtacatcgagctgtga	12	10	1	2	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	ST3GAL4	NM_001254757	exon3	c.G85T	p.D29Y	CGGGAAGACAGGT		53	4	0.08	79	0	0		25		116	0	0				T	126276436	G	T	126276436	3	4	25	1	0	0	0	0	1	0	0	0	15272	942	33	3	91	3	ST3GAL4	11	126276436	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	17894784	126276436	8730080	48	1627											
BCAT1	586	broad.mit.edu	37	chr12	24995152	24995152	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggcaaaaagagatgagccGtaattcctttaagaaagaga	11	5	0	4	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	BCAT1	NM_001178093	exon7	c.C717T	p.Y239Y	TGAGCCGTAATTC		154	4	0.03	73	0	0		44		2119	1	0				A	24995152	G	A	24995152	2	1	25	1	0	0	0	0	0	0	0	1	1352	1140	40	1		1	BCAT1	12	24995152	Silent	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10		24995152	108856743	49	1628											
TUBA1C	84790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	49663613	49663613	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ccccatcatgttctccagatGaagttcgcactggcacttac	7	14	2	2	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_032704	exon3	c.G229A	p.E77K	CCAGATGAAGTTC		135	21	0.16	109	0	0				7170	1610	0.22				A	49663613	G	A	49663613	3	1	25	1	0	0	0	0	1	0	0	0	16806	1291	45	3	239	3	TUBA1C	12	49663613	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	24668461	49663613	84188282	50	1629											
BEST3	144453	broad.mit.edu	37	chr12	70049388	70049388	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttcttgagggcacatccaGtaggtccctggctgggctga	14	10	1	2	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	BEST3	NM_032735	exon10	c.C1306A	p.L436M	CATCCAGTAGGTC		75	3	0.04	78	0	0		129		0	0					T	70049388	G	T	70049388	3	4	25	1	0	0	0	0	1	0	0	0	1404	1020	36	3	704	3	BEST3	12	70049388	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	20385775	70049388	63802507	51	1630											
NBEA	26960	mdanderson.org	37	chr13	35672447	35672447	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catgcagtgctactctgttgGcattcctggttgaactactt	9	10	1	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_015678	exon11	c.G1585A	p.A529T	CTGTTGGCATTCC		34	3	0.09	46	0	0				0	0					A	35672447	G	A	35672447	3	1	25	1	0	0	0	0	1	0	0	0	10234	1203	42	2	1627	2	NBEA	13	35672447	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10		35672447	79497431	52	1631											
RNF113B	140432	mdanderson.org	37	chr13	98829478	98829478	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccgtccttcctggagaagGtggcgctgccatgtttgagt	15	10	0	2	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_178861	exon1	c.C13A	p.P5T	GAGAAGGTGGCGC		19	3	0.16	27	0	0				10	0	0				T	98829478	G	T	98829478	3	4	25	1	0	0	0	0	1	0	0	0	13479	1261	44	3	963	3	RNF113B	13	98829478	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	63157031	98829478	16340400	53	1632											
IRS2	8660	mdanderson.org	37	chr13	110434903	110434903	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtggcgcttggggttgtgGgcgaaggacggggacacggg	22	6	0	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_003749	exon1	c.C3498T	p.A1166A	GTTGTGGGCGAAG		42	3	0.07	46	0	0				4	0	0				A	110434903	G	A	110434903	2	1	25	1	0	0	0	0	0	0	0	1	7884	1219	43	3		3	IRS2	13	110434903	Silent	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	11605425	110434903	4734975	54	1633											
NRL	4901	broad.mit.edu;mdanderson.org	37	chr14	24551760	24551760	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agggactgggccctgaccctGcagcagctccatggcctctt	12	15	1	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	NRL	NM_006177	exon2	c.C298A	p.Q100K	GACCCTGCAGCAG		75	4	0.05	88	0	0		8		5	0	0				T	24551760	G	T	24551760	3	4	25	1	0	0	0	0	1	0	0	0	10703	1328	46	2	423	2	NRL	14	24551760	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10		24551760	82797780	55	1634											
LTB4R2	56413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	24780848	24780848	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tctagggaagggaccatggaGctccgaactacccctcagct	11	13	2	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_019839	exon2	c.G978C	p.E326D	CATGGAGCTCCGA		38	5	0.13	41	1	0.0243902439				25	5	0.2				C	24780848	G	C	24780848	3	2	25	1	0	0	0	0	1	0	0	0	9116	962	34	5	980	5	LTB4R2	14	24780848	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	229088	24780848	82568692	56	1635											
LINGO1	84894	ucsc.edu	37	chr15	77906739	77906739	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgggcatggagtcgttgcCgcccgcgttggccgcgatgc	18	13	0	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	LINGO1	NM_032808	exon2	c.G1510A	p.G504S	CGTTGCCGCCCGC		43	4	0.09	51	0	0		76		208	1	0				T	77906739	C	T	77906739	3	4	25	1	0	0	0	0	1	0	0	0	8854	652	23	1	356	1	LINGO1	15	77906739	Missense_Mutation	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10		77906739	24624653	57	1636											
AXIN1	8312	broad.mit.edu;mdanderson.org	37	chr16	396715	396715	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agccctcctgcttcaggaaaGtcctgaacaggcttatccca	8	14	1	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	AXIN1	NM_181050	exon2	c.C311A	p.T104N	AGGAAAGTCCTGA		46	3	0.07	61	0	0		290		57	0	0				T	396715	G	T	396715	3	4	25	1	0	0	0	0	1	0	0	0	1234	1029	36	3	2317	3	AXIN1	16	396715	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10		396715	89958038	58	1637											
METRN	79006	mdanderson.org	37	chr16	767135	767135	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagtctgtcatcactgtGgtggccgcccgtgtcctccg	13	14	3	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_024042	exon4	c.G630T	p.V210V	CACTGTGGTGGCC		36	3	0.08	59	0	0				94	0	0				T	767135	G	T	767135	2	4	25	1	0	0	0	0	0	0	0	1	9537	1335	47	3		3	METRN	16	767135	Silent	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	370420	767135	89587618	59	1638											
ZSCAN10	84891	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr16	3142732	3142732	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccggccgcagccagtggccGcagagctcccggagccggct	16	17	0	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	ZSCAN10,NS,carcinoma,-1,1	ZSCAN10	NM_032805	exon1	c.C42A	p.C14X	GTGGCCGCAGAGC		72	4	0.06	78	0	0		-1	1	365	2	0.01				T	3142732	G	T	3142732	4	4	25	1	0	0	0	0	0	1	0	0	18268	1079	38	1	2155	1	ZSCAN10	16	3142732	Nonsense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	2375597	3142732	87212021	60	1639											
ACSM5	54988	mdanderson.org	37	chr16	20441066	20441066	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcaaccctgacgtgagggaGaagtggaaacaccagactgg	13	10	1	4	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_017888	exon8	c.G1068T	p.E356D	GAGGGAGAAGTGG		38	3	0.08	47	0	0				1	0	0				T	20441066	G	T	20441066	3	4	25	1	0	0	0	0	1	0	0	0	187	933	33	3	1094	3	ACSM5	16	20441066	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	17298334	20441066	69913687	61	1640											
TNRC6A	27327	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	24826529	24826529	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttccctatgactttatgaaCagcagtacttcaccagccag	7	12	1	2	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	TNRC6A	NM_014494	exon19	c.C4734T	p.N1578N	TATGAACAGCAGT		84	17	0.2	115	1	0.0086956522		171		36	6	0.17				T	24826529	C	T	24826529	2	4	25	1	0	0	0	0	0	0	0	1	16399	477	17	3		3	TNRC6A	16	24826529	Silent	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10	4385463	24826529	65528224	62	1641											
MAZ	4150	mdanderson.org	37	chr16	29818593	29818593	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcgccgcggcggcggccaccGccgtcgtagccccaacctcg	13	20	0	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_002383	exon2	c.G487C	p.A163P	GCCACCGCCGTCG		37	9	0.24	41	6	0.1463414634				56	4	0.07				C	29818593	G	C	29818593	3	2	25	1	0	0	0	0	1	0	0	0	9389	1087	38	5	493	5	MAZ	16	29818593	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	4992064	29818593	60536160	63	1642											
CCDC102A	92922	mdanderson.org	37	chr16	57552171	57552171	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gccccactccgcagcgttttCggcctgcagccgctccatct	9	19	1	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_033212	exon6	c.G1057A	p.E353K	CGTTTTCGGCCTG		23	2	0.09	27	0	0				27	0	0				T	57552171	C	T	57552171	3	4	25	1	0	0	0	0	1	0	0	0	2754	893	31	1	611	1	CCDC102A	16	57552171	Missense_Mutation	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10	27733578	57552171	32802582	64	1643											
PELP1	27043	broad.mit.edu	37	chr17	4575679	4575679	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttccagggctgggggtccTcccccaccaggagtcccttc	11	17	1	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	PELP1	NM_014389	exon16	c.A2607G	p.G869G	GGGTCCTCCCCCA		157	5	0.03	135	3	0.0222222222		102		744	4	0.01				C	4575679	T	C	4575679	2	2	25	1	0	0	0	0	0	0	0	1	11771	1538	54	4		4	PELP1	17	4575679	Silent	SNP	T	TCGA-2G-AAGA-01A-11D-A42Y-10		4575679	76619531	65	1644											
NLGN2	57555	broad.mit.edu	37	chr17	7320787	7320787	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctggcgtgcctggtggggGccccctgctccccgccgcgg	16	18	1	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	NLGN2	NM_020795	exon7	c.G2177C	p.G726A	GTGGGGGCCCCCT		23	6	0.26	14	1	0.0714285714		61		29	0	0				C	7320787	G	C	7320787	3	2	25	1	0	0	0	0	1	0	0	0	10508	1203	42	5	2203	5	NLGN2	17	7320787	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	2745108	7320787	73874423	66	1645											
DNAH2	146754	broad.mit.edu;mdanderson.org	37	chr17	7702429	7702429	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttctgtccagatccagtcGcatatcatagaccaggcccg	9	14	2	2	rs149452093		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	DNAH2	NM_020877	exon55	c.G8568A	p.S2856S	CCAGTCGCATATC		87	4	0.05	88	0	0		498		0	0					A	7702429	G	A	7702429	2	1	25	1	0	0	0	0	0	0	0	1	4630	1074	38	1		1	DNAH2	17	7702429	Silent	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	381642	7702429	73492781	67	1646											
ERBB2	2064	broad.mit.edu	37	chr17	37879599	37879599	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtccatcatctctgcggtGgttggcattctgctggtcgt	12	11	3	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	ERBB2	NM_004448	exon17	c.G1974T	p.V658V	TGCGGTGGTTGGC		120	5	0.04	106	0	0		429		119	0	0				T	37879599	G	T	37879599	2	4	25	1	0	0	0	0	0	0	0	1	5234	1335	47	3		3	ERBB2	17	37879599	Silent	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	30177170	37879599	43315611	68	1647											
TANC2	26115	broad.mit.edu	37	chr17	61498459	61498459	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgaccttcctcagcatacCgaggtggcgtgagatacagc	12	12	1	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	TANC2_ENST00000389520,NS,carcinoma,0,2	TANC2	NM_025185	exon25	c.C5116T	p.R1706X	GCATACCGAGGTG		101	3	0.03	85	0	0		266	2	3	0	0				T	61498459	C	T	61498459	4	4	25	1	0	0	0	0	0	1	0	0	15601	644	23	1	5214	1	TANC2	17	61498459	Nonsense_Mutation	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10	23618860	61498459	19696751	69	1648											
ITGB4	3691	mdanderson.org	37	chr17	73733624	73733624	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcctcctctccagactgcCctccgggctccttctggtgg	9	19	2	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_000213	exon18	c.C2119T	p.P707S	GACTGCCCTCCGG		52	3	0.06	56	0	0				32	0	0				T	73733624	C	T	73733624	3	4	25	1	0	0	0	0	1	0	0	0	7940	623	22	3	2185	3	ITGB4	17	73733624	Missense_Mutation	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10	12235165	73733624	7461586	70	1649											
PCYT2	5833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	79866849	79866849	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgtccacccatttgatggcCtgcaccatcttgtatctctc	6	15	2	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_002861	exon3	c.G243C	p.Q81H	GATGGCCTGCACC		119	16	0.13	142	0	0				84	11	0.13				G	79866849	C	G	79866849	3	3	25	1	0	0	0	0	1	0	0	0	11658	680	24	5	1028	5	PCYT2	17	79866849	Missense_Mutation	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10	6133225	79866849	1328361	71	1650											
LRRC45	201255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	79988252	79988252	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagcagggtgcgcgtggagCtgcaggagcagaacggccgg	20	9	0	2	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_144999	exon16	c.C1726T	p.L576L	GTGGAGCTGCAGG		62	7	0.11	59	0	0				68	18	0.26				T	79988252	C	T	79988252	2	4	25	1	0	0	0	0	0	0	0	1	9046	796	28	2		2	LRRC45	17	79988252	Silent	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10	121403	79988252	1206958	72	1651											
CCDC102B	79839	broad.mit.edu	37	chr18	66504389	66504389	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaataaaactagagatggCgatgaaagaattgagtacac	10	5	0	5	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	CCDC102B,NS,carcinoma,-1,1	CCDC102B	NM_001093729	exon4	c.C389T	p.A130V	AGATGGCGATGAA		105	3	0.03	189	0	0		92	1	7	0	0				T	66504389	C	T	66504389	3	4	25	1	0	0	0	0	1	0	0	0	2755	768	27	1	391	1	CCDC102B	18	66504389	Missense_Mutation	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10		66504389	11572859	73	1652											
TICAM1	148022	mdanderson.org	37	chr19	4818059	4818059	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccacgtcccgcagcgaggCggggcacagcttctcctcag	14	16	2	0	rs201291933	bycluster;by1000genomes	TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_182919	exon2	c.G331A	p.A111T	GCGAGGCGGGGCA		21	2	0.1	32	0	0	0			5	0	0				T	4818059	C	T	4818059	3	4	25	1	0	0	0	0	1	0	0	0	15951	768	27	1	1811	1	TICAM1	19	4818059	Missense_Mutation	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10		4818059	54310924	74	1653											
CCDC159	126075	broad.mit.edu	37	chr19	11464523	11464523	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcactttgtgctcggggGcctgtcccaaggcctcgagc	13	15	1	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	CCDC159	NM_001080503	exon9	c.G745T	p.A249S	TCGGGGGCCTGTC		73	6	0.08	94	1	0.0106382979		35		10	1	0.1				T	11464523	G	T	11464523	3	4	25	1	0	0	0	0	1	0	0	0	2810	1203	42	2	779	2	CCDC159	19	11464523	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	6646464	11464523	47664460	75	1654											
MAN2B1	4125	mdanderson.org	37	chr19	12766567	12766567	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggatgggctgtggtgcgcGggcctggggcttccagcgag	22	9	0	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_000528	exon14	c.C1771A	p.R591S	GTGCGCGGGCCTG		53	3	0.06	74	0	0				227	0	0				T	12766567	G	T	12766567	3	4	25	1	0	0	0	0	1	0	0	0	9265	1116	39	1	1308	1	MAN2B1	19	12766567	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	1302044	12766567	46362416	76	1655											
SIGLEC11	114132	broad.mit.edu	37	chr19	50462655	50462655	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcttgctgctgggagccaAgcctgttctccgctcggcag	15	13	1	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	SIGLEC11	NM_052884	exon5	c.T1019C	p.L340P	GAGCCAAGCCTGT		75	3	0.04	98	0	0		70		0	0					G	50462655	A	G	50462655	3	3	25	1	0	0	0	0	1	0	0	0	14361	72	3	4	1105	4	SIGLEC11	19	50462655	Missense_Mutation	SNP	A	TCGA-2G-AAGA-01A-11D-A42Y-10	37696088	50462655	8666328	77	1656											
MOCS3	27304	mdanderson.org	37	chr20	49575689	49575689	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcgcagtacttggcagcgGccggcgtgggccgccttggc	17	13	0	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_014484	exon1	c.G310T	p.A104S	GCAGCGGCCGGCG		46	3	0.07	60	0	0				27	0	0				T	49575689	G	T	49575689	3	4	25	1	0	0	0	0	1	0	0	0	9740	1203	42	2	312	2	MOCS3	20	49575689	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10		49575689	13449831	78	1657											
RIMBP3	85376	mdanderson.org	37	chr22	20460125	20460125	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgttctccgcttgcagggTataacagcggcgcgccagca	12	13	1	0	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_015672	exon1	c.A1177C	p.T393P	GCAGGGTATAACA		51	4	0.08	127	2	0.0157480315				5	0	0				G	20460125	T	G	20460125	3	3	25	1	0	0	0	0	1	0	0	0	13413	1638	57	4	3746	4	RIMBP3	22	20460125	Missense_Mutation	SNP	T	TCGA-2G-AAGA-01A-11D-A42Y-10		20460125	30844441	79	1658											
CBY1	25776	mdanderson.org	37	chr22	39067165	39067165	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagagaacaatctcttgcGgctgaaagtggacatcttat	11	7	2	2	rs140554782	alternate_allele	TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_001002880	exon5	c.G404T	p.R135L	TCTTGCGGCTGAA		47	3	0.06	70	0	0				72	0	0				T	39067165	G	T	39067165	3	4	25	1	0	0	0	0	1	0	0	0	2743	1116	39	1	285	1	CBY1	22	39067165	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	18607040	39067165	12237401	80	1659											
CERK	64781	mdanderson.org	37	chr22	47083093	47083093	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaaagagtcgaaccagctGgcagtggactctgcagagac	13	10	1	2	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_022766	exon13	c.C1552A	p.Q518K	CCAGCTGGCAGTG		48	3	0.06	40	0	0				40	0	0				T	47083093	G	T	47083093	3	4	25	1	0	0	0	0	1	0	0	0	3289	1357	47	3	65	3	CERK	22	47083093	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	8015928	47083093	4221473	81	1660											
GPR64	10149	broad.mit.edu	37	chrX	19026144	19026144	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgaactgaaccctggaaGctagctccatgtcatgagct	9	10	1	3	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	GPR64	NM_001184834	exon19	c.C1520A	p.A507D	CTGGAAGCTAGCT		268	4	0.01	162	0	0		102		11	0	0				T	19026144	G	T	19026144	3	4	25	1	0	0	0	0	1	0	0	0	6744	971	34	2	1577	2	GPR64	23	19026144	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10		19026144	136244416	82	1661											
EIF1AX	1964	broad.mit.edu	37	chrX	20148690	20148690	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	aaactgaatttcatcatcatCtccaggaccaaatgtatcag	5	10	5	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	EIF1AX	NM_001412	exon6	c.G373T	p.D125Y	CATCATCTCCAGG		462	7	0.02	282	0	0		21		276	4	0.01				A	20148690	C	A	20148690	3	1	25	1	0	0	0	0	1	0	0	0	5018	913	32	3	69	3	EIF1AX	23	20148690	Missense_Mutation	SNP	C	TCGA-2G-AAGA-01A-11D-A42Y-10	1122546	20148690	135121870	83	1662											
WDR45	11152	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	48935722	48935722	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtcttggttgaaacgcagGctggtcactcctcgaagtgg	14	9	2	1	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_007075	exon3	c.C33G	p.S11R	ACGCAGGCTGGTC		93	7	0.08	69	0	0				110	2	0.02				C	48935722	G	C	48935722	3	2	25	1	0	0	0	0	1	0	0	0	17356	1194	42	5	1092	5	WDR45	23	48935722	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	28787032	48935722	106334838	84	1663											
SPIN3	169981	broad.mit.edu	37	chrX	57020933	57020933	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtgcctgagctaagaccaTccccctccattcatttttgg	8	13	1	2	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	SPIN3	NM_001010862	exon2	c.A448G	p.M150V	AGACCATCCCCCT		211	7	0.03	94	2	0.0212765957		33		3	0	0				C	57020933	T	C	57020933	3	2	25	1	0	0	0	0	1	0	0	0	15110	1435	50	4	332	4	SPIN3	23	57020933	Missense_Mutation	SNP	T	TCGA-2G-AAGA-01A-11D-A42Y-10	8085211	57020933	98249627	85	1664											
HMGB3	3149	mdanderson.org	37	chrX	150156378	150156378	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggaggaggaggaggaGgatgaataaagaaactgttt	18	1	0	2	novel		TCGA-2G-AAGA-01A-11D-A42Y-10	TCGA-2G-AAGA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9df6892b-86ee-426c-9e0b-583e6831cc56	f5daa72a-daaa-4cf0-bdc9-fde932b3440e	.	.	NM_005342	exon5	c.G594T	p.E198D	GGAGGAGGATGAA		19	2	0.11	10	0	0				163	0	0				T	150156378	G	T	150156378	3	4	25	1	0	0	0	0	1	0	0	0	7267	991	35	3	608	3	HMGB3	23	150156378	Missense_Mutation	SNP	G	TCGA-2G-AAGA-01A-11D-A42Y-10	93135445	150156378	5114182	86	1665											
PLEKHN1	84069	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	906518	906518	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctaacccggctgcggacggCgtcagggcacgaacccggcg	15	15	2	0	rs199724483	by1000genomes	TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	PLEKHN1,NS,carcinoma,0,1	PLEKHN1	NM_001160184	exon7	c.C674T	p.A225V	GGACGGCGTCAGG		77	5	0.06	76	0	0	0.002	0	1	1	0	0				T	906518	C	T	906518	3	4	26	1	0	0	0	0	1	0	0	0	12130	768	27	1	700	1	PLEKHN1	1	906518	Missense_Mutation	SNP	C	TCGA-2G-AAGC-01A-21D-A42Y-10		906518	248344103	1	1666											
TP73	7161	ucsc.edu	37	chr1	3644260	3644260	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctggccgcgaccgaaaagCtgatgaggaccactaccggg	13	13	0	2	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	TP73	NM_005427	exon8	c.C911T	p.A304V	GAAAAGCTGATGA		34	4	0.12	35	0	0		54		7	0	0				T	3644260	C	T	3644260	3	4	26	1	0	0	0	0	1	0	0	0	16453	797	28	2	980	2	TP73	1	3644260	Missense_Mutation	SNP	C	TCGA-2G-AAGC-01A-21D-A42Y-10	2737742	3644260	245606361	2	1667											
SERINC2	347735	mdanderson.org	37	chr1	31898760	31898760	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attcccgtgcctggtacgcaGgtcagtgctgccaccctgcc	11	16	1	0	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_001199038	exon6	c.G637T	p.G213C	TACGCAGGTCAGT		41	3	0.07	38	0	0				41	0	0				T	31898760	G	T	31898760	3	4	26	1	0	0	0	0	1	0	0	0	14133	1014	35	3	628	3	SERINC2	1	31898760	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	28254500	31898760	217351861	3	1668											
GJA9	81025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	39340765	39340766	+	Frame_Shift_Del	DEL	GT	GT	-													atgactacaactagtactaaGtgtggaaatctcattagaaa					novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	GT	GT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	GJA9	NM_030772	exon2	c.1006_1007del	p.336_336del	TACTAAGTGTGGA		142	33	0.23	114	0	0		55		0	0					-	39340766	GT	-	39340765	7	5	26	1	0	1	0	1	0	0	0	0	6447	1029	36	0	545	0	GJA9	1	39340765	Frame_Shift_Del	DEL	GT	TCGA-2G-AAGC-01A-21D-A42Y-10	7442005	39340765	209909856	4	1669											
PTBP2	58155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	97235325	97235325	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtgctccttctcgtgtacTtcatattcgaaaattacctg	7	10	2	0	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_021190	exon4	c.T182A	p.L61H	GTGTACTTCATAT		209	55	0.26	192	0	0				33	15	0.45				A	97235325	T	A	97235325	3	1	26	1	0	0	0	0	1	0	0	0	12774	1609	56	5	196	5	PTBP2	1	97235325	Missense_Mutation	SNP	T	TCGA-2G-AAGC-01A-21D-A42Y-10	57894560	97235325	152015296	5	1670											
POGZ	23126	broad.mit.edu	37	chr1	151378739	151378739	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggaagggctaaagcctgCgggtgagtgggggttggtgg	23	4	0	1	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	POGZ_ENST00000491586,NS,carcinoma,0,2	POGZ	NM_015100	exon19	c.G2772A	p.P924P	AGCCTGCGGGTGA		189	4	0.02	186	0	0		211	2	129	1	0.01				T	151378739	C	T	151378739	2	4	26	1	0	0	0	0	0	0	0	1	12233	755	27	1		1	POGZ	1	151378739	Silent	SNP	C	TCGA-2G-AAGC-01A-21D-A42Y-10	54143414	151378739	97871882	6	1671											
FCRLB	127943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	161693309	161693309	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atttgggccacctacttctgCcctctcacaagaagagcatt	7	13	2	2	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	FCRLB,NS,carcinoma,-2,1	FCRLB	NM_001002901	exon3	c.C205T	p.P69S	CTTCTGCCCTCTC		177	33	0.19	201	1	0.0049751244		-2	1	0	0					T	161693309	C	T	161693309	3	4	26	1	0	0	0	0	1	0	0	0	5833	739	26	2	215	2	FCRLB	1	161693309	Missense_Mutation	SNP	C	TCGA-2G-AAGC-01A-21D-A42Y-10	10314570	161693309	87557312	7	1672											
MOGS	7841	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	74691780	74691780	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agccatagggacccacaccgTccccctgctcacacgtgtgc	9	18	1	0	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_006302	exon2	c.A422G	p.D141G	ACACCGTCCCCCT		142	6	0.04	145	0	0				113	0	0				C	74691780	T	C	74691780	3	2	26	1	0	0	0	0	1	0	0	0	9745	1667	58	4	2103	4	MOGS	2	74691780	Missense_Mutation	SNP	T	TCGA-2G-AAGC-01A-21D-A42Y-10		74691780	168507593	8	1673											
CCDC142	84865	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	74709738	74709738	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccgccacctgcgggccccCgcctccaggccgcagcatca	12	21	1	0	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_032779	exon1	c.G227A	p.R76Q	GGCCCCCGCCTCC		54	12	0.22	54	0	0				3	1	0.33				T	74709738	C	T	74709738	3	4	26	1	0	0	0	0	1	0	0	0	2794	652	23	1	2040	1	CCDC142	2	74709738	Missense_Mutation	SNP	C	TCGA-2G-AAGC-01A-21D-A42Y-10	17958	74709738	168489635	9	1674											
C2orf57	165100	mdanderson.org	37	chr2	232457786	232457786	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcagtgagcagctctgtcGcatccactgactggcaggat	13	11	1	2	rs369074059		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_152614	exon1	c.G124A	p.A42T	TCTGTCGCATCCA		110	5	0.05	86	0	0				0	0					A	232457786	G	A	232457786	3	1	26	1	0	0	0	0	1	0	0	0	2192	1087	38	1	126	1	C2orf57	2	232457786	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	157748048	232457786	10741587	10	1675											
AQP12B	653437	mdanderson.org	37	chr2	241621835	241621835	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaggctctgcagcaggtgCaggtcactgagctcccaggc	14	12	2	2	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_001102467	exon1	c.G420T	p.L140L	CAGGTGCAGGTCA		47	3	0.06	37	0	0				0	0					A	241621835	C	A	241621835	2	1	26	1	0	0	0	0	0	0	0	1	822	697	25	2		2	AQP12B	2	241621835	Silent	SNP	C	TCGA-2G-AAGC-01A-21D-A42Y-10	9164049	241621835	1577538	11	1676											
HCLS1	3059	broad.mit.edu	37	chr3	121366225	121366225	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atagccatgggatgctttggGccctgactccatctctttct	9	12	2	1	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	HCLS1	NM_005335	exon4	c.C229A	p.P77T	CTTTGGGCCCTGA		253	5	0.02	259	0	0		78		112	0	0				T	121366225	G	T	121366225	3	4	26	1	0	0	0	0	1	0	0	0	7035	1203	42	2	1275	2	HCLS1	3	121366225	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10		121366225	76656205	12	1677											
IGSF10	285313	mdanderson.org	37	chr3	151164540	151164540	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acttggaaaagacaatgctgCtgtggcagtggtgagcctct	13	8	1	2	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_178822	exon4	c.G3229A	p.A1077T	ATGCTGCTGTGGC		51	3	0.06	50	0	0				1	0	0				T	151164540	C	T	151164540	3	4	26	1	0	0	0	0	1	0	0	0	7640	797	28	2	4702	2	IGSF10	3	151164540	Missense_Mutation	SNP	C	TCGA-2G-AAGC-01A-21D-A42Y-10	29798315	151164540	46857890	13	1678											
CHRD	8646	broad.mit.edu	37	chr3	184101396	184101396	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatcagcgcactgtcctgtGccacatggctggactccagc	12	14	1	0	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	CHRD	NM_003741	exon12	c.G1406T	p.C469F	TCCTGTGCCACAT		119	6	0.05	132	1	0.0075757576		149		9	0	0				T	184101396	G	T	184101396	3	4	26	1	0	0	0	0	1	0	0	0	3394	1319	46	2	1452	2	CHRD	3	184101396	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	32936856	184101396	13921034	14	1679											
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	125599937	125599937	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gctaaaagtgctgcaacagtCccagataagctggtagacgt	11	9	0	2	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_020337	exon3	c.G636A	p.G212G	AACAGTCCCAGAT		148	36	0.24	151	0	0				11	4	0.36				T	125599937	C	T	125599937	2	4	26	1	0	0	0	0	0	0	0	1	671	842	30	3		3	ANKRD50	4	125599937	Silent	SNP	C	TCGA-2G-AAGC-01A-21D-A42Y-10		125599937	65554339	15	1680											
ACSL1	2180	broad.mit.edu	37	chr4	185701510	185701510	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctattttgagcaaagatGccaatgaactgatctggggc	12	7	2	4	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	ACSL1	NM_001995	exon5	c.C453A	p.G151G	AAAGATGCCAATG		100	5	0.05	95	0	0		77		20	0	0				T	185701510	G	T	185701510	2	4	26	1	0	0	0	0	0	0	0	1	177	1306	46	2		2	ACSL1	4	185701510	Silent	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	60101573	185701510	5452766	16	1681											
TRIO	7204	mdanderson.org	37	chr5	14488050	14488050	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcccccgccaaggacgcgcGcgctagcctgggcaccctgc	13	20	0	0	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_007118	exon48	c.G7313T	p.R2438L	ACGCGCGCGCTAG		27	2	0.07	34	0	0				12	0	0				T	14488050	G	T	14488050	3	4	26	1	0	0	0	0	1	0	0	0	16612	1087	38	1	7503	1	TRIO	5	14488050	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10		14488050	166427210	17	1682											
IPO11	51194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	61772516	61772516	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtatttttaacaggtagaaGtataggtacagataatgtgt	10	2	0	2	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_001134779	exon9	c.G884A	p.S295N	GTAGAAGTATAGG		552	180	0.33	712	0	0				26	8	0.31				A	61772516	G	A	61772516	3	1	26	1	0	0	0	0	1	0	0	0	7836	1029	36	3	918	3	IPO11	5	61772516	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	47284466	61772516	119142744	18	1683											
PCDH12	51294	broad.mit.edu	37	chr5	141335641	141335641	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cccaagccattgggagtctcGatgggcaccagcaggtggcc	14	13	1	0	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	PCDH12	NM_016580	exon1	c.C1776A	p.I592I	AGTCTCGATGGGC		66	3	0.05	64	0	0		133		13	0	0				T	141335641	G	T	141335641	2	4	26	1	0	0	0	0	0	0	0	1	11556	1048	37	1		1	PCDH12	5	141335641	Silent	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	79563125	141335641	39579619	19	1684											
DEK	7913	mdanderson.org	37	chr6	18258233	18258233	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagatttctaagttcatcgGttttcttcttacttagaaaa	6	6	4	2	rs200796384	bycluster;alternate_allele	TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	DEK,caecum,carcinoma,+1,1	DEK	NM_003472	exon4	c.C308A	p.T103N	TCATCGGTTTTCT		83	4	0.05	95	1	0.0105263158		1	1	296	2	0.01				T	18258233	G	T	18258233	3	4	26	1	0	0	0	0	1	0	0	0	4452	1261	44	3	851	3	DEK	6	18258233	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10		18258233	152856834	20	1685											
NFKBIL1	4795	broad.mit.edu;mdanderson.org	37	chr6	31526067	31526067	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaggggaccgagaacccaaGccaaccagggccgggcccag	14	15	0	1	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	NFKBIL1	NM_005007	exon4	c.G825T	p.K275N	ACCCAAGCCAACC		59	4	0.07	63	0	0		17		133	0	0				T	31526067	G	T	31526067	3	4	26	1	0	0	0	0	1	0	0	0	10427	962	34	2	839	2	NFKBIL1	6	31526067	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	13267834	31526067	139589000	21	1686											
RIMS1	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	72892035	72892035	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aatggcaaaggagccctgaaGagcgagcggaaacgcgtgcc	15	10	0	2	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	RIMS1	NM_014989	exon6	c.G861T	p.K287N	CCTGAAGAGCGAG		302	31	0.1	370	1	0.0027027027		278		0	0					T	72892035	G	T	72892035	3	4	26	1	0	0	0	0	1	0	0	0	13418	933	33	3	883	3	RIMS1	6	72892035	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	41365968	72892035	98223032	22	1687											
AKD1	221264	broad.mit.edu	37	chr6	109867322	109867322	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgacaaggcatattcttaaTggaggagcctgtcacagggg	13	9	2	0	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	AKD1	NM_001145128	exon26	c.A2973C	p.P991P	TCTTAATGGAGGA		83	7	0.08	107	5	0.046728972		223		0	0					G	109867322	T	G	109867322	2	3	26	1	0	0	0	0	0	0	0	1	457	1451	51	4		4	AKD1	6	109867322	Silent	SNP	T	TCGA-2G-AAGC-01A-21D-A42Y-10	36975287	109867322	61247745	23	1688											
FNDC1	84624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	159653823	159653823	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caactccaatgcgccatcacGgtccaccatgtcctcctccg	6	19	1	0	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	FNDC1,colon,carcinoma,0,3	FNDC1	NM_032532	exon11	c.G2279A	p.R760Q	CATCACGGTCCAC		56	7	0.13	75	0	0		0	3	15	1	0.07				A	159653823	G	A	159653823	3	1	26	1	0	0	0	0	1	0	0	0	6000	1116	39	1	2321	1	FNDC1	6	159653823	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	49786501	159653823	11461244	24	1689											
DLL1	28514	mdanderson.org	37	chr6	170593060	170593060	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtcgtcacagtgcctccccGagaagccggcctggcagcgg	14	15	1	1	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_005618	exon9	c.C1307T	p.S436L	CTCCCCGAGAAGC		15	2	0.13	24	1	0.0416666667				9	0	0				A	170593060	G	A	170593060	3	1	26	1	0	0	0	0	1	0	0	0	4594	1059	37	1	876	1	DLL1	6	170593060	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	10939237	170593060	522007	25	1690											
GPR146	115330	mdanderson.org	37	chr7	1097335	1097335	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaaggccagcatgaccatgCcggacgtgtactttgtcaac	11	12	1	1	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_138445	exon1	c.C184T	p.P62S	ACCATGCCGGACG		43	3	0.07	35	0	0				3	0	0				T	1097335	C	T	1097335	3	4	26	1	0	0	0	0	1	0	0	0	6691	739	26	2	186	2	GPR146	7	1097335	Missense_Mutation	SNP	C	TCGA-2G-AAGC-01A-21D-A42Y-10		1097335	158041328	26	1691											
HOXA13	3209	mdanderson.org	37	chr7	27238794	27238794	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccgggcagagtggacttccaGaggtggggaggctgcgcctg	19	10	0	2	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_000522	exon1	c.C903A	p.L301L	CTTCCAGAGGTGG		37	3	0.08	28	0	0				21	0	0				T	27238794	G	T	27238794	2	4	26	1	0	0	0	0	0	0	0	1	7331	929	33	3		3	HOXA13	7	27238794	Silent	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	26141459	27238794	131899869	27	1692											
ZAN	7455	broad.mit.edu	37	chr7	100349991	100349991	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacagaaaaacccaccatcTccccagaaaaacccaccacc	2	20	1	2	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	ZAN_ENST00000542585,NS,carcinoma,0,5	ZAN	.	.	.	.	ACCATCTCCCCAG		124	12	0.1	100	3	0.03		658	5	1	0	0				C	100349991	T	C	100349991	1	2	26	0	1	0	0	0	0	0	0	0	17572	1551	54	4		4	ZAN	7	100349991	RNA	SNP	T	TCGA-2G-AAGC-01A-21D-A42Y-10	73111197	100349991	58788672	28	1693											
ADAM32	203102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	39079164	39079164	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agctgttgtgattttcgaacTtgtgtactgaaagacggagc	12	6	0	3	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_145004	exon13	c.T1269G	p.T423T	TCGAACTTGTGTA		125	35	0.28	67	0	0				0	0					G	39079164	T	G	39079164	2	3	26	1	0	0	0	0	0	0	0	1	248	1596	56	4		4	ADAM32	8	39079164	Silent	SNP	T	TCGA-2G-AAGC-01A-21D-A42Y-10		39079164	107284858	29	1694											
FRMPD1	22844	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	37746248	37746248	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccagagtactgctccaggGcactgagacagctgaaagcc	13	12	0	3	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	FRMPD1	NM_014907	exon16	c.G4219A	p.A1407T	TCCAGGGCACTGA		44	5	0.11	32	0	0		237		0	0					A	37746248	G	A	37746248	3	1	26	1	0	0	0	0	1	0	0	0	6091	1203	42	2	4277	2	FRMPD1	9	37746248	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10		37746248	103467183	30	1695											
SECISBP2	79048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	91940430	91940430	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agataactcttcatccatatGcctattctccttataccctt	2	13	3	1	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	SECISBP2,NS,carcinoma,0,1	SECISBP2	NM_024077	exon3	c.G271A	p.A91T	CCATATGCCTATT		163	54	0.33	178	0	0		0	1	23	9	0.39				A	91940430	G	A	91940430	3	1	26	1	0	0	0	0	1	0	0	0	14059	1319	46	2	281	2	SECISBP2	9	91940430	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	54194182	91940430	49273001	31	1696											
PHF2	5253	mdanderson.org	37	chr9	96422835	96422835	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caagatggagccgcccaagaAgggcaaggtgggaccccctc	14	13	0	2	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_005392	exon12	c.A1691G	p.K564R	CCAAGAAGGGCAA		20	2	0.1	37	0	0				19	0	0				G	96422835	A	G	96422835	3	3	26	1	0	0	0	0	1	0	0	0	11877	72	3	4	1737	4	PHF2	9	96422835	Missense_Mutation	SNP	A	TCGA-2G-AAGC-01A-21D-A42Y-10	4482405	96422835	44790596	32	1697											
GALNT12	79695	mdanderson.org	37	chr9	101589071	101589071	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggccaatgagctttcgggActgcccaaggtgcgcctgat	13	11	0	2	rs146370762	bycluster;byfrequency;by1000genomes	TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_024642	exon3	c.A579G	p.G193G	TTCGGGACTGCCC		42	3	0.07	69	0	0	0.005			7	0	0				G	101589071	A	G	101589071	2	3	26	1	0	0	0	0	0	0	0	1	6249	262	10	4		4	GALNT12	9	101589071	Silent	SNP	A	TCGA-2G-AAGC-01A-21D-A42Y-10	5166236	101589071	39624360	33	1698											
WDR5	11091	mdanderson.org	37	chr9	137007545	137007545	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accttattgtctcaggatccGtaagtgtggctggggtgtct	13	8	2	0	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_017588	exon6	c.444+1G>A	.	GGATCCGTAAGTG		53	3	0.06	63	0	0				0	0					A	137007545	G	A	137007545	5	1	26	1	0	0	0	0	0	0	1	0	17362	1159	40	1	463	1	WDR5	9	137007545	Splice_Site	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	35418474	137007545	4205886	34	1699											
INPP5E	56623	mdanderson.org	37	chr9	139327038	139327038	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgccaccttcccgtcacctGctgtgggaacagaaatgggg	12	14	1	1	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_019892	exon6	c.C1280A	p.S427X	TCACCTGCTGTGG		28	3	0.11	44	0	0				25	0	0				T	139327038	G	T	139327038	4	4	26	1	0	0	0	0	0	1	0	0	7800	1333	46	2	674	2	INPP5E	9	139327038	Nonsense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	2319493	139327038	1886393	35	1700											
DNA2	1763	broad.mit.edu	37	chr10	70182359	70182359	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctttcactcatgccaagaGctctgtcaataaatcagatt	6	10	5	2	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	DNA2	NM_001080449	exon16	c.C2405A	p.A802D	CCAAGAGCTCTGT		115	4	0.03	111	0	0		76		39	0	0				T	70182359	G	T	70182359	3	4	26	1	0	0	0	0	1	0	0	0	4624	971	34	2	801	2	DNA2	10	70182359	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10		70182359	65352388	36	1701											
NPFFR1	64106	mdanderson.org	37	chr10	72014735	72014735	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agatatcccaggctggaatgGtgaggggcaggtgggagcag	19	6	0	2	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_022146	exon4	c.C1271A	p.T424N	GGAATGGTGAGGG		15	2	0.13	12	0	0				0	0					T	72014735	G	T	72014735	3	4	26	1	0	0	0	0	1	0	0	0	10623	1261	44	3	24	3	NPFFR1	10	72014735	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	1832376	72014735	63520012	37	1702											
NSMCE4A	54780	mdanderson.org	37	chr10	123734659	123734659	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccggccctctggcccgcGgccgctgctgtccccagaca	12	21	1	1	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_017615	exon1	c.C22A	p.R8S	GCCCGCGGCCGCT		10	2	0.2	15	0	0				3	0	0				T	123734659	G	T	123734659	3	4	26	1	0	0	0	0	1	0	0	0	10724	1116	39	1	1175	1	NSMCE4A	10	123734659	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	51719924	123734659	11800088	38	1703											
MUC2	4583	mdanderson.org	37	chr11	1093437	1093437	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cccatcaccaccaccaccacGgtgaccccaaccccgacacc	4	24	1	1	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	MUC2_ENST00000441003,NS,carcinoma,0,4	MUC2_ENST00000441003	NM_002457	exon30	c.G5256C	p.T1752T	CACCACGGTGACC		29	4	0.14	41	0	0		0	4	0	0					C	1093437	G	C	1093437	2	2	26	1	0	0	0	0	0	0	0	1	10022	1103	39	5		5	MUC2	11	1093437	Silent	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10		1093437	133913079	39	1704											
RCN1	5954	mdanderson.org	37	chr11	32112827	32112827	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcgccgcgggttctgcggGccaagcccacggtgcgcaaa	16	14	1	0	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_002901	exon1	c.G85A	p.A29T	CTGCGGGCCAAGC		56	3	0.05	64	0	0				104	0	0				A	32112827	G	A	32112827	3	1	26	1	0	0	0	0	1	0	0	0	13230	1203	42	2	87	2	RCN1	11	32112827	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	31019390	32112827	102893689	40	1705											
EXT2	2132	bcgsc.ca	37	chr11	44130752	44130752	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	atttcttgacaggtgggatcGaggtacgaatcacctgttgt	12	7	2	1	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	EXT2_ENST00000358681,NS,carcinoma,0,6	EXT2	NM_000401	exon3	c.G644T	p.R215L	GGGATCGAGGTAC		75	5	0.07	76	0	0		129	6	84	0	0				T	44130752	G	T	44130752	3	4	26	1	0	0	0	0	1	0	0	0	5352	1058	37	1	654	1	EXT2	11	44130752	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	12017925	44130752	90875764	41	1706											
BRMS1	25855	mdanderson.org	37	chr11	66109598	66109598	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttctgactctgtctggctGccgctccgctcctcctcact	7	18	5	1	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_001024957	exon2	c.C108A	p.G36G	CTGGCTGCCGCTC		56	4	0.07	54	0	0				170	0	0				T	66109598	G	T	66109598	2	4	26	1	0	0	0	0	0	0	0	1	1518	1306	46	2		2	BRMS1	11	66109598	Silent	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	21978846	66109598	68896918	42	1707											
PITPNM1	9600	mdanderson.org	37	chr11	67259714	67259714	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcccgaggaggcatgcgaGtgcgagcccgcttccagctg	16	13	0	0	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_004910	exon24	c.C3525T	p.H1175H	ATGCGAGTGCGAG		44	3	0.07	73	0	0				49	0	0				A	67259714	G	A	67259714	2	1	26	1	0	0	0	0	0	0	0	1	11997	1020	36	3		3	PITPNM1	11	67259714	Silent	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	1150116	67259714	67746802	43	1708											
SHANK2	22941	hgsc.bcm.edu;mdanderson.org	37	chr11	70332654	70332654	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccgcattttggtatcaatGtaaagaggtttgttgaggtc	13	5	1	2	rs375960981	alternate_allele	TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_133266	exon10	c.C1980A	p.Y660X	ATCAATGTAAAGA		96	4	0.04	131	0	0				0	0					T	70332654	G	T	70332654	4	4	26	1	0	0	0	0	0	1	0	0	14319	1372	48	3	1813	3	SHANK2	11	70332654	Nonsense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	3072940	70332654	64673862	44	1709											
NEU3	10825	mdanderson.org	37	chr11	74716883	74716883	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgatgacctaggggtcacAtggcaccatggtagactcat	12	9	2	3	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_006656	exon3	c.A732G	p.T244T	GGTCACATGGCAC		43	3	0.07	47	0	0				10	0	0				G	74716883	A	G	74716883	2	3	26	1	0	0	0	0	0	0	0	1	10389	204	8	4		4	NEU3	11	74716883	Silent	SNP	A	TCGA-2G-AAGC-01A-21D-A42Y-10	4384229	74716883	60289633	45	1710											
BCO2	83875	mdanderson.org	37	chr11	112071435	112071435	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaaaggccttttcagatgGgataagctgggaaccccagt	14	8	1	1	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_031938	exon7	c.G965T	p.G322V	CAGATGGGATAAG		113	5	0.04	159	0	0				0	0					T	112071435	G	T	112071435	3	4	26	1	0	0	0	0	1	0	0	0	1383	1232	43	3	991	3	BCO2	11	112071435	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	37354552	112071435	22935081	46	1711											
DDX11	1663	ucsc.edu	37	chr12	31244689	31244689	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcagatgctgctgcatgcgGccactcggcaggccgcgggc	15	14	1	1	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	DDX11	NM_030653	exon10	c.G1126A	p.A376T	CATGCGGCCACTC		241	26	0.11	142	5	0.0352112676		188		98	12	0.12				A	31244689	G	A	31244689	3	1	26	1	0	0	0	0	1	0	0	0	4366	1203	42	2	1160	2	DDX11	12	31244689	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10		31244689	102607206	47	1712											
NOC4L	79050	mdanderson.org	37	chr12	132631841	132631841	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggagctggccctcagcGcactcctgaagttcgtgcag	12	15	1	1	rs375866510	alternate_allele	TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_024078	exon4	c.G361T	p.A121S	CTCAGCGCACTCC		54	3	0.06	60	0	0				155	0	0				T	132631841	G	T	132631841	3	4	26	1	0	0	0	0	1	0	0	0	10561	1087	38	1	375	1	NOC4L	12	132631841	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	101387152	132631841	1220054	48	1713											
SLC46A3	283537	mdanderson.org	37	chr13	29284959	29284959	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacagagaatggcacaataGtgaaaaggaacggcaccctg	12	8	0	2	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_181785	exon4	c.C1082A	p.T361N	ACAATAGTGAAAA		53	3	0.06	63	0	0				5	0	0				T	29284959	G	T	29284959	3	4	26	1	0	0	0	0	1	0	0	0	14700	1029	36	3	329	3	SLC46A3	13	29284959	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10		29284959	85884919	49	1714											
RFC3	5983	broad.mit.edu	37	chr13	34398073	34398073	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gactccatctaaaaaaaaaaTtgaaattagcaccattgcaa	4	8	1	1	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	RFC3	NM_002915	exon3	c.T245A	p.I82N	AAAAAATTGAAAT		474	10	0.02	525	1	0.0019047619		40		111	0	0				A	34398073	T	A	34398073	3	1	26	1	0	0	0	0	1	0	0	0	13297	1493	52	5	255	5	RFC3	13	34398073	Missense_Mutation	SNP	T	TCGA-2G-AAGC-01A-21D-A42Y-10	5113114	34398073	80771805	50	1715											
CDH24	64403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	23524544	23524544	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggtgcggccctctccccGgtcaacatccgagtgcagct	11	16	2	0	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	CDH24_ENST00000397359,colon,carcinoma,0,2	CDH24_ENST00000397359	NM_022478	exon3	c.C220T	p.R74W	CTCCCCGGTCAAC		92	15	0.16	80	0	0		0	2	20	4	0.2				A	23524544	G	A	23524544	3	1	26	1	0	0	0	0	1	0	0	0	3131	1115	39	1	2283	1	CDH24	14	23524544	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10		23524544	83824996	51	1716											
LRRC16B	90668	broad.mit.edu	37	chr14	24534300	24534300	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agggggacagggggccggggTcccctaccactggactcctc	16	14	0	0	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	LRRC16B	NM_138360	exon33	c.T3214G	p.S1072A	CCGGGGTCCCCTA		112	10	0.09	84	5	0.0595238095		120		0	0					G	24534300	T	G	24534300	3	3	26	1	0	0	0	0	1	0	0	0	9016	1667	58	4	3344	4	LRRC16B	14	24534300	Missense_Mutation	SNP	T	TCGA-2G-AAGC-01A-21D-A42Y-10	1009756	24534300	82815240	52	1717											
LTB4R	1241	broad.mit.edu	37	chr14	24785074	24785074	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgtattgctcactgctcccTttttccttcacttcctggcc	5	17	2	0	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	LTB4R	NM_181657	exon2	c.T217C	p.F73L	GCTCCCTTTTTCC		122	3	0.02	113	1	0.0088495575		18		61	0	0				C	24785074	T	C	24785074	3	2	26	1	0	0	0	0	1	0	0	0	9115	1609	56	4	219	4	LTB4R	14	24785074	Missense_Mutation	SNP	T	TCGA-2G-AAGC-01A-21D-A42Y-10	250774	24785074	82564466	53	1718											
BMP4	652	mdanderson.org	37	chr14	54417212	54417212	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcccttgaggtaacgatcgGctaatcctgacatgctggcc	10	13	0	2	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_130851	exon4	c.C765T	p.S255S	CGATCGGCTAATC		49	3	0.06	60	0	0				249	0	0				A	54417212	G	A	54417212	2	1	26	1	0	0	0	0	0	0	0	1	1461	1194	42	2		2	BMP4	14	54417212	Silent	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	29632138	54417212	52932328	54	1719											
ASB2	51676	broad.mit.edu;mdanderson.org	37	chr14	94417390	94417390	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccaactgtccactctgggCggccacgaacaagggggtga	13	13	1	1	rs142812400	bycluster	TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	ASB2,lower_third,carcinoma,+2,1	ASB2	NM_001202429	exon6	c.G835A	p.A279T	TCTGGGCGGCCAC		173	6	0.03	147	0	0		71	1	12	0	0				T	94417390	C	T	94417390	3	4	26	1	0	0	0	0	1	0	0	0	1022	768	27	1	1092	1	ASB2	14	94417390	Missense_Mutation	SNP	C	TCGA-2G-AAGC-01A-21D-A42Y-10	40000178	94417390	12932150	55	1720											
KIF7	374654	mdanderson.org	37	chr15	90176925	90176925	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgagcctgaccttgacgcGgtgctgccgcttgctcattt	12	13	1	3	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_198525	exon12	c.C2584A	p.R862S	TGACGCGGTGCTG		43	3	0.07	28	0	0				23	0	0				T	90176925	G	T	90176925	3	4	26	1	0	0	0	0	1	0	0	0	8350	1116	39	1	1479	1	KIF7	15	90176925	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10		90176925	12354467	56	1721											
ABCC1	4363	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	16225711	16225711	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	caggtgggccgagtggaattCcggaactactgcctgcgcta	14	11	0	0	rs45533037	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_004996	exon27	c.C3885A	p.F1295L	GGAATTCCGGAAC		113	11	0.1	106	0	0				91	17	0.19				A	16225711	C	A	16225711	3	1	26	1	0	0	0	0	1	0	0	0	49	854	30	3	3991	3	ABCC1	16	16225711	Missense_Mutation	SNP	C	TCGA-2G-AAGC-01A-21D-A42Y-10		16225711	74129042	57	1722											
PRSS53	339105	mdanderson.org	37	chr16	31097783	31097783	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtggggcgactgatgagacGcaggcgcagattgcgtaggg	19	7	0	3	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	PRSS53,NS,carcinoma,0,1	PRSS53	NM_001039503	exon5	c.C538T	p.R180C	TGAGACGCAGGCG		43	3	0.07	61	0	0		0	1	3	0	0				A	31097783	G	A	31097783	3	1	26	1	0	0	0	0	1	0	0	0	12680	1087	38	1	1151	1	PRSS53	16	31097783	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	14872072	31097783	59256970	58	1723											
MYH4	4622	broad.mit.edu	37	chr17	10368813	10368813	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagaagatatggggtggggCctcctggcgctttttgcctc	16	9	0	2	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	MYH4	NM_017533	exon5	c.G451T	p.A151S	GTGGGGCCTCCTG		190	7	0.04	118	1	0.0084745763		349		0	0					A	10368813	C	A	10368813	3	1	26	1	0	0	0	0	1	0	0	0	10084	739	26	2	5512	2	MYH4	17	10368813	Missense_Mutation	SNP	C	TCGA-2G-AAGC-01A-21D-A42Y-10		10368813	70826397	59	1724											
MYO15A	51168	broad.mit.edu	37	chr17	18025400	18025400	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccttggcgcccatcaggGccccagagcccctgcccaag	10	21	1	1	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	MYO15A	NM_016239	exon2	c.G3286T	p.A1096S	ATCAGGGCCCCAG		94	10	0.11	75	2	0.0266666667		268		0	0					T	18025400	G	T	18025400	3	4	26	1	0	0	0	0	1	0	0	0	10110	1203	42	2	3288	2	MYO15A	17	18025400	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	7656587	18025400	63169810	60	1725											
HEXIM1	0	broad.mit.edu	37	chr17	43229647	43229648	+	RNA	INS	-	-	A													tagaccctttttctttatttINSttttttttttttgagacgga					rs141039553	bycluster;by1000genomes	TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	HEXIM1	.	.	.	.	TTTATTTTTTTTT		8	4	0.5	4	0	0		25		0	0					A	43229648	-	A	43229647	6	5	26	0	1	1	1	0	0	0	0	0	7116	1856	64	0		0	HEXIM1	17	43229647	RNA	INS	-	TCGA-2G-AAGC-01A-21D-A42Y-10	25204247	43229647	37965563	61	1726											
SDK2	54549	broad.mit.edu	37	chr17	71503707	71503707	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcacctgtgtccgcacagGctctgtcttgaaatacgggg	13	11	2	1	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	SDK2	NM_001144952	exon2	c.C94A	p.P32T	GCACAGGCTCTGT		100	4	0.04	99	1	0.0101010101		219		2	0	0				T	71503707	G	T	71503707	3	4	26	1	0	0	0	0	1	0	0	0	14022	1203	42	2	6600	2	SDK2	17	71503707	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	28274060	71503707	9691503	62	1727											
DLGAP1	9229	mdanderson.org	37	chr18	3879777	3879777	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaggttggcggggatgcGgttcgccttggtggccaggg	20	9	0	0	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_001242761	exon4	c.C292A	p.R98S	GGATGCGGTTCGC		24	2	0.08	29	0	0				2	0	0				T	3879777	G	T	3879777	3	4	26	1	0	0	0	0	1	0	0	0	4587	1116	39	1	2736	1	DLGAP1	18	3879777	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10		3879777	74197471	63	1728											
POLRMT	5442	mdanderson.org	37	chr19	619054	619054	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacgcccaggggtgtgacCcactccaccacagagcccat	12	16	0	2	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_005035	exon15	c.G3210T	p.W1070C	TGTGACCCACTCC		94	5	0.05	69	1	0.0144927536				211	0	0				A	619054	C	A	619054	3	1	26	1	0	0	0	0	1	0	0	0	12285	624	22	3	510	3	POLRMT	19	619054	Missense_Mutation	SNP	C	TCGA-2G-AAGC-01A-21D-A42Y-10		619054	58509929	64	1729											
LINGO3	645191	mdanderson.org	37	chr19	2290612	2290612	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccggcaggtttcgcagcgcGtcgccgcgcacctcggccgg	15	17	0	0	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_001101391	exon2	c.C1164A	p.D388E	CAGCGCGTCGCCG		23	2	0.09	29	0	0				3	0	0				T	2290612	G	T	2290612	3	4	26	1	0	0	0	0	1	0	0	0	8856	1136	40	1	618	1	LINGO3	19	2290612	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	1671558	2290612	56838371	65	1730											
LMNB2	84823	mdanderson.org	37	chr19	2434504	2434504	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcccgaatgcgatcttcagCggcactggcctgcggagggg	15	13	2	0	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_032737	exon7	c.G991A	p.A331T	CTTCAGCGGCACT		47	3	0.06	78	1	0.0128205128				308	0	0				T	2434504	C	T	2434504	3	4	26	1	0	0	0	0	1	0	0	0	8890	768	27	1	895	1	LMNB2	19	2434504	Missense_Mutation	SNP	C	TCGA-2G-AAGC-01A-21D-A42Y-10	143892	2434504	56694479	66	1731											
EEF2	1938	mdanderson.org	37	chr19	3976653	3976653	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gctggggcggctgctgttgtCgaaggggtctccgggcagga	20	9	1	0	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_001961	exon15	c.G2476A	p.D826N	TGTTGTCGAAGGG		36	3	0.08	28	0	0				8078	10	0				T	3976653	C	T	3976653	3	4	26	1	0	0	0	0	1	0	0	0	4955	884	31	1	104	1	EEF2	19	3976653	Missense_Mutation	SNP	C	TCGA-2G-AAGC-01A-21D-A42Y-10	1542149	3976653	55152330	67	1732											
LPHN1	22859	broad.mit.edu	37	chr19	14261858	14261858	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtagtagatttcgggggggcCggggggtgcgggagggggtg	26	4	0	1	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	LPHN1,NS,carcinoma,0,1	LPHN1	NM_001008701	exon24	c.G4252C	p.G1418R	GGGGGCCGGGGGG		40	5	0.13	48	1	0.0208333333		107	1	35	0	0				G	14261858	C	G	14261858	3	3	26	1	0	0	0	0	1	0	0	0	8959	652	23	5	176	5	LPHN1	19	14261858	Missense_Mutation	SNP	C	TCGA-2G-AAGC-01A-21D-A42Y-10	10285205	14261858	44867125	68	1733											
RPL18A	6142	mdanderson.org	37	chr19	17972941	17972941	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgcgggtgaagaacttcggGatctggctgcgctatgactc	14	10	1	3	rs78185444	bycluster;byfrequency;by1000genomes	TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_000980	exon3	c.G237A	p.G79G	CTTCGGGATCTGG		50	3	0.06	46	0	0	0.004			7497	1	0				A	17972941	G	A	17972941	2	1	26	1	0	0	0	0	0	0	0	1	13616	1161	41	3		3	RPL18A	19	17972941	Silent	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	3711083	17972941	41156042	69	1734											
KLHL26	55295	mdanderson.org	37	chr19	18779075	18779075	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggccttcaactaccaggtgCtgcccttccggcagcacgag	11	15	1	0	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_018316	exon3	c.C868T	p.L290L	CAGGTGCTGCCCT		37	3	0.08	40	0	0				6	0	0				T	18779075	C	T	18779075	2	4	26	1	0	0	0	0	0	0	0	1	8423	796	28	2		2	KLHL26	19	18779075	Silent	SNP	C	TCGA-2G-AAGC-01A-21D-A42Y-10	806134	18779075	40349908	70	1735											
MYH7B	57644	mdanderson.org	37	chr20	33585097	33585097	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagctggaggcagagcgggCagcccgggcccgcgtggaga	21	11	0	2	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_020884	exon32	c.C3527T	p.A1176V	AGCGGGCAGCCCG		35	3	0.09	43	0	0				14	0	0				T	33585097	C	T	33585097	3	4	26	1	0	0	0	0	1	0	0	0	10087	710	25	2	3645	2	MYH7B	20	33585097	Missense_Mutation	SNP	C	TCGA-2G-AAGC-01A-21D-A42Y-10		33585097	29440423	71	1736											
SLC9A8	23315	broad.mit.edu	37	chr20	48479536	48479536	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aaacatttttacaagcccttGactacttcctcaaaatgttc	3	11	1	1	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	SLC9A8	NM_001260491	exon9	c.G832T	p.D278Y	GCCCTTGACTACT		171	5	0.03	129	0	0		63		12	0	0				T	48479536	G	T	48479536	3	4	26	1	0	0	0	0	1	0	0	0	14774	1290	45	3	818	3	SLC9A8	20	48479536	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10	14894439	48479536	14545984	72	1737											
IFNAR1	3454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	34715721	34715721	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tatctggaaaaactcttcagGtgtagaagtaagcattattt	8	5	3	1	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_000629	exon4	c.G524A	p.G175D	CTTCAGGTGTAGA		108	29	0.27	92	0	0				75	16	0.21				A	34715721	G	A	34715721	3	1	26	1	0	0	0	0	1	0	0	0	7587	1261	44	3	538	3	IFNAR1	21	34715721	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10		34715721	13414174	73	1738											
OSBP2	23762	mdanderson.org	37	chr22	31266595	31266595	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	acggcctcaagatcccatctGagagtggggagaagctgaag	14	9	2	4	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_030758	exon3	c.G1033T	p.E345X	CCATCTGAGAGTG		72	4	0.06	59	0	0				2	0	0				T	31266595	G	T	31266595	4	4	26	1	0	0	0	0	0	1	0	0	11320	1291	45	3	1043	3	OSBP2	22	31266595	Nonsense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10		31266595	20037971	74	1739											
SFI1	9814	mdanderson.org	37	chr22	32009152	32009152	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagccaggaggcaggagcagCgggcgacagtgcgggccctg	19	12	0	0	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_001007467	exon25	c.C2515T	p.R839W	GAGCAGCGGGCGA		33	3	0.09	28	0	0				29	0	0				T	32009152	C	T	32009152	3	4	26	1	0	0	0	0	1	0	0	0	14209	759	27	1	2609	1	SFI1	22	32009152	Missense_Mutation	SNP	C	TCGA-2G-AAGC-01A-21D-A42Y-10	742557	32009152	19295414	75	1740											
XG	7499	broad.mit.edu	37	chrX	2700164	2700164	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccgagaatcccgacagcgGtggaagtaagaatccgcagg	14	11	0	2	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	XG	NM_001141920	exon4	c.G185A	p.G62D	ACAGCGGTGGAAG		134	6	0.04	141	0	0		22		2	0	0				A	2700164	G	A	2700164	3	1	26	1	0	0	0	0	1	0	0	0	17486	1261	44	3	199	3	XG	23	2700164	Missense_Mutation	SNP	G	TCGA-2G-AAGC-01A-21D-A42Y-10		2700164	152570396	76	1741											
RPGR	6103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	38146264	38146264	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gccagtgttctgctcctgaaCtaccttcctcacaggttcca	7	15	2	1	novel		TCGA-2G-AAGC-01A-21D-A42Y-10	TCGA-2G-AAGC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a571cff-caa7-4b12-b014-4abe54978d35	2eeea093-efbd-4c6b-a84d-a56b07d5e9f8	.	.	NM_001034853	exon15	c.G1988C	p.S663T	CCTGAACTACCTT		139	51	0.37	134	0	0				0	0					G	38146264	C	G	38146264	3	3	26	1	0	0	0	0	1	0	0	0	13599	565	20	5	2033	5	RPGR	23	38146264	Missense_Mutation	SNP	C	TCGA-2G-AAGC-01A-21D-A42Y-10	35446100	38146264	117124296	77	1742											
TTLL10	254173	mdanderson.org	37	chr1	1132855	1132855	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccggaagagcctgcgcggCcagaagatgttgcctctgct	13	12	1	3	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001130045	exon16	c.C1650T	p.G550G	GCGCGGCCAGAAG		41	3	0.07	51	0	0				0	0					T	1132855	C	T	1132855	2	4	27	1	0	0	0	0	0	0	0	1	16784	726	26	2		2	TTLL10	1	1132855	Silent	SNP	C	TCGA-2G-AAGE-01A-21D-A42Y-10		1132855	248117766	1	1743											
PRAMEF4	400735	ucsc.edu	37	chr1	12939904	12939904	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acagttagttattgtgaggaActttaacgaggtcttcagac	10	6	2	2	rs77146569	byfrequency	TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	PRAMEF4	NM_001009611	exon4	c.T898G	p.F300V	TGAGGAACTTTAA		38	7	0.18	25	6	0.24		62		6	0	0				C	12939904	A	C	12939904	3	2	27	1	0	0	0	0	1	0	0	0	12487	43	2	4	542	4	PRAMEF4	1	12939904	Missense_Mutation	SNP	A	TCGA-2G-AAGE-01A-21D-A42Y-10	11807049	12939904	236310717	2	1744											
ASAP3	55616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	23763530	23763530	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggttggtgctgagccaCgtggggtctgcagaggaaag	17	9	1	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_017707	exon15	c.G1350T	p.T450T	GAGCCACGTGGGG		98	26	0.27	69	0	0				27	13	0.48				A	23763530	C	A	23763530	2	1	27	1	0	0	0	0	0	0	0	1	1011	523	19	1		1	ASAP3	1	23763530	Silent	SNP	C	TCGA-2G-AAGE-01A-21D-A42Y-10	10823626	23763530	225487091	3	1745											
RCC1	1104	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	28857097	28857097	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgccaaggtgcctgcgggCcgagccctcctgaccagaaa	12	16	0	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	RCC1	NM_001048194	exon3	c.C136T	p.P46S	TGCGGGCCGAGCC		25	5	0.2	22	0	0		61		2	0	0				T	28857097	C	T	28857097	3	4	27	1	0	0	0	0	1	0	0	0	13224	739	26	2	142	2	RCC1	1	28857097	Missense_Mutation	SNP	C	TCGA-2G-AAGE-01A-21D-A42Y-10	5093567	28857097	220393524	4	1746											
FAM73A	374986	broad.mit.edu	37	chr1	78245408	78245408	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcaggccagctgtacctgGcctggagctccaggtacagg	16	12	0	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	FAM73A	NM_198549	exon1	c.G68T	p.G23V	TACCTGGCCTGGA		80	9	0.11	70	1	0.0142857143		56		9	0	0				T	78245408	G	T	78245408	3	4	27	1	0	0	0	0	1	0	0	0	5650	1203	42	2	70	2	FAM73A	1	78245408	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	49388311	78245408	171005213	5	1747											
IGSF3	3321	mdanderson.org	37	chr1	117150780	117150780	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagcaaattcgctgttgaGgacaggcacagcgttaggac	14	8	0	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001542	exon5	c.C1006A	p.L336I	TGTTGAGGACAGG		133	5	0.04	138	0	0				22	0	0				T	117150780	G	T	117150780	3	4	27	1	0	0	0	0	1	0	0	0	7644	1000	35	3	2670	3	IGSF3	1	117150780	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	38905372	117150780	132099841	6	1748											
TRIM67	440730	mdanderson.org	37	chr1	231299311	231299311	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcggggccgtgccggggaCgtctgcagccgcggcggtgg	21	14	1	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001004342	exon1	c.C596A	p.T199K	CGGGGACGTCTGC		23	3	0.13	10	0	0				0	0					A	231299311	C	A	231299311	3	1	27	1	0	0	0	0	1	0	0	0	16600	536	19	1	598	1	TRIM67	1	231299311	Missense_Mutation	SNP	C	TCGA-2G-AAGE-01A-21D-A42Y-10	114148531	231299311	17951310	7	1749											
IRF2BP2	359948	mdanderson.org	37	chr1	234745193	234745193	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggcaggtcacacaggtaGcacgactgccgccgggacgc	16	14	1	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_182972	exon1	c.C48A	p.C16X	CAGGTAGCACGAC		41	3	0.07	40	0	0				28	0	0				T	234745193	G	T	234745193	4	4	27	1	0	0	0	0	0	1	0	0	7873	963	34	2	1723	2	IRF2BP2	1	234745193	Nonsense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	3445882	234745193	14505428	8	1750											
ZNF496	84838	broad.mit.edu	37	chr1	247492680	247492680	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaggccgcagccagcccccGcacaggtcccagaggcgctg	13	18	1	1	rs140768491	bycluster	TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	ZNF496	NM_032752	exon3	c.C201T	p.C67C	GCCCCCGCACAGG		134	4	0.03	101	1	0.0099009901		80		31	0	0				A	247492680	G	A	247492680	2	1	27	1	0	0	0	0	0	0	0	1	18001	1079	38	1		1	ZNF496	1	247492680	Silent	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	12747487	247492680	1757941	9	1751											
COX7A2L	9167	broad.mit.edu	37	chr2	42578366	42578366	+	Frame_Shift_Del	DEL	T	T	-													tctgcagcctaactcatttgTttttgggctgcgaagccatg					novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	COX7A2L	NM_004718	exon3	c.338delA	p.N113fs	CATTTGTTTTTGG		558	7	0.01	409	0	0		8		315	0	0				-	42578366	T	-	42578366	7	5	27	1	0	1	0	1	0	0	0	0	3804	1725	60	0	10	0	COX7A2L	2	42578366	Frame_Shift_Del	DEL	T	TCGA-2G-AAGE-01A-21D-A42Y-10		42578366	200621007	10	1752											
EIF5B	9669	broad.mit.edu	37	chr2	99977964	99977965	+	Frame_Shift_Ins	INS	-	-	A													tgcaatctagaaaaggacagINSaaaaaaaatcagaaaaacaa					novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	EIF5B	NM_015904	exon4	c.600_601insA	p.Q200fs	AGGACAGAAAAAA		307	0	0	196	0	0		95		108	0	0				A	99977965	-	A	99977964	7	5	27	1	0	1	1	0	0	0	0	0	5072	933	33	0	614	0	EIF5B	2	99977964	Frame_Shift_Ins	INS	-	TCGA-2G-AAGE-01A-21D-A42Y-10	57399598	99977964	143221409	11	1753											
WDR52	55779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	113098310	113098310	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttttctccatcttctcccAtctctgctgctagcttgttc	4	15	4	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	WDR52,NS,carcinoma,+1,1	WDR52	NM_001164496	exon17	c.T2141A	p.M714K	TCTCCCATCTCTG		174	73	0.42	153	0	0		1	1	0	0					T	113098310	A	T	113098310	3	4	27	1	0	0	0	0	1	0	0	0	17363	217	8	5	3514	5	WDR52	3	113098310	Missense_Mutation	SNP	A	TCGA-2G-AAGE-01A-21D-A42Y-10		113098310	84924120	12	1754											
CNBP	7555	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	128889947	128889948	+	Frame_Shift_Ins	INS	-	-	T													cacttcactttggtgcagtcINStttttgaatgtgtccgaatt					novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	CNBP	NM_001127192	exon4	c.397_398insA	p.D133fs	TGCAGTCTTTTTG		51	20	0.39	43	0	0		12		807	0	0				T	128889948	-	T	128889947	7	5	27	1	0	1	1	0	0	0	0	0	3615	913	32	0	150	0	CNBP	3	128889947	Frame_Shift_Ins	INS	-	TCGA-2G-AAGE-01A-21D-A42Y-10	15791637	128889947	69132483	13	1755											
STX18	53407	mdanderson.org	37	chr4	4421779	4421779	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ggctagctgtcgtaccagtcGaggaagagcaaggagaagga	16	7	0	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_016930	exon11	c.C990A	p.L330L	CCAGTCGAGGAAG		51	3	0.06	83	0	0				84	0	0				T	4421779	G	T	4421779	2	4	27	1	0	0	0	0	0	0	0	1	15396	1045	37	1		1	STX18	4	4421779	Silent	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10		4421779	186732497	14	1756											
TBC1D9	23158	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	141545359	141545359	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ataattacgattttcttgggAatttgctctcttccctacaa	5	9	2	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_015130	exon20	c.T2989A	p.S997T	CTTGGGAATTTGC		166	8	0.05	168	0	0				9	0	0				T	141545359	A	T	141545359	3	4	27	1	0	0	0	0	1	0	0	0	15686	246	9	5	819	5	TBC1D9	4	141545359	Missense_Mutation	SNP	A	TCGA-2G-AAGE-01A-21D-A42Y-10	137123580	141545359	49608917	15	1757											
ARL15	54622	mdanderson.org	37	chr5	53182448	53182448	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaattaatcagctgagagaaGctgtctttcagtgcatccat	8	8	3	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_019087	exon5	c.C558A	p.S186R	AGAGAAGCTGTCT		98	5	0.05	83	0	0				9	0	0				T	53182448	G	T	53182448	3	4	27	1	0	0	0	0	1	0	0	0	928	962	34	2	60	2	ARL15	5	53182448	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10		53182448	127732812	16	1758											
PCDHA1	56147	mdanderson.org	37	chr5	140167609	140167609	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcactattggtgcagtcagTgagctggtgccgcgattggt	16	8	1	1	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_018900	exon1	c.T1734C	p.S578S	AGTCAGTGAGCTG		47	3	0.06	44	0	0				1	0	0				C	140167609	T	C	140167609	2	2	27	1	0	0	0	0	0	0	0	1	11565	1693	59	4		4	PCDHA1	5	140167609	Silent	SNP	T	TCGA-2G-AAGE-01A-21D-A42Y-10	86985161	140167609	40747651	17	1759											
ADAMTS2	9509	mdanderson.org	37	chr5	178567021	178567021	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgtcagccagatgcagtGtcctttaaaacaatgctgaa	10	8	1	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_014244	exon11	c.C1645A	p.H549N	TGCAGTGTCCTTT		41	3	0.07	61	0	0				5	0	0				T	178567021	G	T	178567021	3	4	27	1	0	0	0	0	1	0	0	0	264	1377	48	3	2038	3	ADAMTS2	5	178567021	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	38399412	178567021	2348239	18	1760											
E2F3	1871	mdanderson.org	37	chr6	20402610	20402610	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcttcgccgccgccgccgcCgctgccgccgccccgggcgc	15	23	0	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001949	exon1	c.C147T	p.A49A	CGCCGCCGCTGCC		27	2	0.07	30	1	0.0333333333				0	0					T	20402610	C	T	20402610	2	4	27	1	0	0	0	0	0	0	0	1	4894	639	23	1		1	E2F3	6	20402610	Silent	SNP	C	TCGA-2G-AAGE-01A-21D-A42Y-10		20402610	150712457	19	1761											
TMEM63B	55362	broad.mit.edu;mdanderson.org	37	chr6	44107208	44107208	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	acccgtatggctgcagggatGatgagatccgggacaaatgt	14	8	0	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	TMEM63B	NM_018426	exon7	c.G412T	p.D138Y	AGGGATGATGAGA		129	5	0.04	116	0	0		77		35	0	0				T	44107208	G	T	44107208	3	4	27	1	0	0	0	0	1	0	0	0	16250	1290	45	3	434	3	TMEM63B	6	44107208	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	23704598	44107208	127007859	20	1762											
MAP3K7	6885	mdanderson.org	37	chr6	91278326	91278326	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caatattaggatggttcacaCgggataactgccgaagctgt	11	8	1	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	MAP3K7_ENST00000369329,caecum,carcinoma,-1,5	MAP3K7_ENST00000369329	NM_145333	exon3	c.G248A	p.R83H	TTCACACGGGATA		64	4	0.06	49	0	0		-1	5	30	0	0				T	91278326	C	T	91278326	3	4	27	1	0	0	0	0	1	0	0	0	9304	536	19	1	1632	1	MAP3K7	6	91278326	Missense_Mutation	SNP	C	TCGA-2G-AAGE-01A-21D-A42Y-10	47171118	91278326	79836741	21	1763											
NCOA7	135112	broad.mit.edu	37	chr6	126210954	126210954	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agataagacctgggtgaaaaAgggagagcccctcccggtaa	13	9	0	4	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	NCOA7	NM_001199619	exon10	c.A1754G	p.K585R	TGAAAAAGGGAGA		108	4	0.04	118	0	0		92		6	0	0				G	126210954	A	G	126210954	3	3	27	1	0	0	0	0	1	0	0	0	10280	72	3	4	1784	4	NCOA7	6	126210954	Missense_Mutation	SNP	A	TCGA-2G-AAGE-01A-21D-A42Y-10	34932628	126210954	44904113	22	1764											
REPS1	85021	broad.mit.edu	37	chr6	139266690	139266690	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tatcatggcttacggatcccTttttcacttgccccctgcca	6	15	2	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	REPS1,right_lower_lobe,carcinoma,0,1	REPS1	NM_001128617	exon3	c.A422G	p.K141R	GATCCCTTTTTCA		204	5	0.02	181	0	0		58	1	58	0	0				C	139266690	T	C	139266690	3	2	27	1	0	0	0	0	1	0	0	0	13279	1609	56	4	2040	4	REPS1	6	139266690	Missense_Mutation	SNP	T	TCGA-2G-AAGE-01A-21D-A42Y-10	13055736	139266690	31848377	23	1765											
SYNJ2	8871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	158449830	158449830	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgttggtgacaggctgcaCatctgtgggcagaattccag	15	8	1	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_003898	exon3	c.C257T	p.T86I	GCTGCACATCTGT		119	13	0.11	115	0	0				8	1	0.13				T	158449830	C	T	158449830	3	4	27	1	0	0	0	0	1	0	0	0	15509	478	17	3	267	3	SYNJ2	6	158449830	Missense_Mutation	SNP	C	TCGA-2G-AAGE-01A-21D-A42Y-10	19183140	158449830	12665237	24	1766											
TCP1	6950	broad.mit.edu	37	chr6	160210470	160210470	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcgtttccccagtgctgcGgtcaccgaacacggacaaag	11	13	1	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	TCP1	NM_030752	exon1	c.C31A	p.R11S	TGCTGCGGTCACC		305	6	0.02	263	0	0		37		504	0	0				T	160210470	G	T	160210470	3	4	27	1	0	0	0	0	1	0	0	0	15768	1116	39	1	1687	1	TCP1	6	160210470	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	1760640	160210470	10904597	25	1767											
TNRC18	84629	mdanderson.org	37	chr7	5428730	5428730	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcggcgcgcgcctcctggGtcaggtccaccacgccccgt	12	20	1	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001080495	exon5	c.C725T	p.T242I	TCCTGGGTCAGGT		24	2	0.08	11	0	0				11	0	0				A	5428730	G	A	5428730	3	1	27	1	0	0	0	0	1	0	0	0	16398	1261	44	3	8285	3	TNRC18	7	5428730	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10		5428730	153709933	26	1768											
BBS9	27241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	33388730	33388730	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagccaaattatcagtctaCgtgcaaccaccattagaatt	5	10	2	1	rs376024532		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_014451	exon13	c.C1380T	p.Y460Y	AGTCTACGTGCAA		455	99	0.22	276	0	0				16	1	0.06				T	33388730	C	T	33388730	2	4	27	1	0	0	0	0	0	0	0	1	1340	547	19	1		1	BBS9	7	33388730	Silent	SNP	C	TCGA-2G-AAGE-01A-21D-A42Y-10	27960000	33388730	125749933	27	1769											
ASL	435	mdanderson.org	37	chr7	65552333	65552333	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctgcagtggggccattgcAggcaatcccctgggtgtgga	15	12	0	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001024943	exon8	c.A615G	p.A205A	CATTGCAGGCAAT		39	4	0.1	25	0	0				48	0	0				G	65552333	A	G	65552333	2	3	27	1	0	0	0	0	0	0	0	1	1043	175	7	4		4	ASL	7	65552333	Silent	SNP	A	TCGA-2G-AAGE-01A-21D-A42Y-10	32163603	65552333	93586330	28	1770											
PHTF2	57157	broad.mit.edu	37	chr7	77567055	77567055	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gccctggctccatagttcccAcccaggattagaaaaaataa	7	12	0	1	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	PHTF2	NM_001127357	exon11	c.A1265C	p.H422P	GTTCCCACCCAGG		441	15	0.03	214	4	0.0186915888		104		56	1	0.02				C	77567055	A	C	77567055	3	2	27	1	0	0	0	0	1	0	0	0	11910	159	6	4	1361	4	PHTF2	7	77567055	Missense_Mutation	SNP	A	TCGA-2G-AAGE-01A-21D-A42Y-10	12014722	77567055	81571608	29	1771											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	82595343	82595343	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgttcttctggggctgatGtttttgcctctgggagtagc	13	8	4	1	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_014510	exon4	c.C3761T	p.T1254I	GCTGATGTTTTTG		430	86	0.2	267	0	0				1	0	0				A	82595343	G	A	82595343	3	1	27	1	0	0	0	0	1	0	0	0	11629	1377	48	3	11772	3	PCLO	7	82595343	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	5028288	82595343	76543320	30	1772											
GIGYF1	64599	mdanderson.org	37	chr7	100279588	100279588	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttggcctggaaggccgtcTgcagcgaggcgctgctcagc	17	12	2	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_022574	exon23	c.A2954T	p.Q985L	GCCGTCTGCAGCG		44	3	0.07	27	0	0				164	0	0				A	100279588	T	A	100279588	3	1	27	1	0	0	0	0	1	0	0	0	6418	1580	55	5	161	5	GIGYF1	7	100279588	Missense_Mutation	SNP	T	TCGA-2G-AAGE-01A-21D-A42Y-10	17684245	100279588	58859075	31	1773											
EPHB4	2050	broad.mit.edu	37	chr7	100420018	100420018	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctggggccaggggcggggAcggcatccaccacgcagcta	18	13	0	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	EPHB4	NM_004444	exon4	c.T683C	p.V228A	GCGGGGACGGCAT		138	32	0.23	84	13	0.1547619048		106		172	8	0.05				G	100420018	A	G	100420018	3	3	27	1	0	0	0	0	1	0	0	0	5205	275	10	4	2336	4	EPHB4	7	100420018	Missense_Mutation	SNP	A	TCGA-2G-AAGE-01A-21D-A42Y-10	140430	100420018	58718645	32	1774											
LAMB4	22798	broad.mit.edu	37	chr7	107703251	107703251	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctactttgagaggtcctagGgtcacagtcacatgactgac	11	10	2	3	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	LAMB4	NM_007356	exon23	c.C3250A	p.P1084T	TCCTAGGGTCACA		270	6	0.02	153	0	0		253		1	0	0				T	107703251	G	T	107703251	3	4	27	1	0	0	0	0	1	0	0	0	8651	1232	43	3	2083	3	LAMB4	7	107703251	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	7283233	107703251	51435412	33	1775											
EPHB6	0	broad.mit.edu	37	chr7	142561026	142561027	+	Frame_Shift_Ins	INS	-	-	G													cagttagggaacagagtggcINSgggcatggtgtgtagcctat					novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	EPHB6	NM_004445	exon5	c.41_42insG	p.A14fs	GAGTGGCGGGCAT		207	6	0.03	158	0	0		168		7	0	0				G	142561027	-	G	142561026	7	5	27	1	0	1	1	0	0	0	0	0	5206	768	27	0	43	0	EPHB6	7	142561026	Frame_Shift_Ins	INS	-	TCGA-2G-AAGE-01A-21D-A42Y-10	34857775	142561026	16577637	34	1776											
MLL3	58508	broad.mit.edu	37	chr7	151873927	151873927	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagatctggatcacaaggatGcaaagaagtcttttctccat	8	8	4	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	MLL3	NM_170606	exon38	c.C8611A	p.H2871N	AAGGATGCAAAGA		166	4	0.02	114	0	0		1564		11	0	0				T	151873927	G	T	151873927	3	4	27	1	0	0	0	0	1	0	0	0	9669	1319	46	2	6212	2	MLL3	7	151873927	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	9312901	151873927	7264736	35	1777											
CSPP1	79848	broad.mit.edu	37	chr8	68049789	68049789	+	Frame_Shift_Del	DEL	A	A	-													agaacatataatccctggggAaaaggtggaggtggtgctcc					novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	CSPP1	NM_024790	exon15	c.1911delA	p.G637fs	CTGGGGAAAAGGT		885	7	0.01	287	0	0		129		49	0	0				-	68049789	A	-	68049789	7	5	27	1	0	1	0	1	0	0	0	0	3987	233	9	0	2082	0	CSPP1	8	68049789	Frame_Shift_Del	DEL	A	TCGA-2G-AAGE-01A-21D-A42Y-10		68049789	78314233	36	1778											
SLC26A7	115111	broad.mit.edu	37	chr8	92261932	92261932	+	Frame_Shift_Del	DEL	C	C	-													gctttggagcaagatgcataCcccccagtgtgaagacatta					novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	SLC26A7	NM_134266	exon2	c.53delC	p.T18fs	TGCATACCCCCCA		356	7	0.02	118	0	0		207		1	0	0				-	92261932	C	-	92261932	7	5	27	1	0	1	0	1	0	0	0	0	14576	507	18	0	55	0	SLC26A7	8	92261932	Frame_Shift_Del	DEL	C	TCGA-2G-AAGE-01A-21D-A42Y-10	24212143	92261932	54102090	37	1779											
PPP1R16A	84988	mdanderson.org	37	chr8	145727188	145727188	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cggtgaccccccagcctgacTgtggcttcagggcaggcggg	16	14	1	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_032902	exon10	c.T1489A	p.C497S	CCTGACTGTGGCT		51	3	0.06	52	0	0				52	0	0				A	145727188	T	A	145727188	3	1	27	1	0	0	0	0	1	0	0	0	12413	1580	55	5	1527	5	PPP1R16A	8	145727188	Missense_Mutation	SNP	T	TCGA-2G-AAGE-01A-21D-A42Y-10	53465256	145727188	636834	38	1780											
GALT	2592	broad.mit.edu	37	chr9	34649411	34649411	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcttctttctgtcaggggcTcccacaggatcagaggctgg	12	12	5	1	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	GALT	NM_000155	exon10	c.T909C	p.A303A	AGGGGCTCCCACA		78	7	0.09	68	1	0.0147058824		29		46	0	0				C	34649411	T	C	34649411	2	2	27	1	0	0	0	0	0	0	0	1	6269	1538	54	4		4	GALT	9	34649411	Silent	SNP	T	TCGA-2G-AAGE-01A-21D-A42Y-10		34649411	106564020	39	1781											
TESK1	7016	broad.mit.edu	37	chr9	35609179	35609179	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgccgctcactaccctcaTcccccgagctcccccgccgt	7	23	2	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	TESK1,NS,carcinoma,0,1	TESK1	NM_006285	exon10	c.T1321C	p.S441P	CCCTCATCCCCCG		65	18	0.28	77	13	0.1688311688		46	1	49	6	0.12				C	35609179	T	C	35609179	3	2	27	1	0	0	0	0	1	0	0	0	15825	1435	50	4	1359	4	TESK1	9	35609179	Missense_Mutation	SNP	T	TCGA-2G-AAGE-01A-21D-A42Y-10	959768	35609179	105604252	40	1782											
GBA2	57704	mdanderson.org	37	chr9	35741872	35741872	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagtctgcccttcccgacGcaggcacactgtgaacttaa	8	15	1	1	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_020944	exon4	c.C583T	p.R195C	CCCGACGCAGGCA		53	3	0.06	48	0	0				15	0	0				A	35741872	G	A	35741872	3	1	27	1	0	0	0	0	1	0	0	0	6306	1087	38	1	2256	1	GBA2	9	35741872	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	132693	35741872	105471559	41	1783											
LRSAM1	90678	broad.mit.edu	37	chr9	130216851	130216851	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	aaacccagtgaggaggctcgGaaacgcctggagtaccagat	13	10	0	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	LRSAM1,NS,malignant_melanoma,+2,1	LRSAM1	NM_001005373	exon3	c.G45T	p.R15R	GGCTCGGAAACGC		205	6	0.03	178	1	0.0056179775		40	1	5	0	0				T	130216851	G	T	130216851	2	4	27	1	0	0	0	0	0	0	0	1	9087	1161	41	3		3	LRSAM1	9	130216851	Silent	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	94474979	130216851	10996580	42	1784											
EHMT1	79813	broad.mit.edu	37	chr9	140637837	140637837	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttagcttgcttgccttttGttttagcagctgcagtatct	8	8	1	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	EHMT1_ENST00000460843,NS,carcinoma,0,6	EHMT1	NM_001145527	exon5	c.G838T	p.V280F	CCTTTTGTTTTAG		23	11	0.48	46	9	0.1956521739		196	6	45	0	0				T	140637837	G	T	140637837	3	4	27	1	0	0	0	0	1	0	0	0	5009	1377	48	3	856	3	EHMT1	9	140637837	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	10420986	140637837	575594	43	1785											
BICC1	80114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	60560687	60560687	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgaagtaggcatgcctcgAagtccttcccattctgggaa	11	10	1	1	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	BICC1,colon,carcinoma,+1,2	BICC1	NM_001080512	exon14	c.A1896G	p.R632R	GCCTCGAAGTCCT		102	33	0.32	145	0	0		1	2	7	6	0.86				G	60560687	A	G	60560687	2	3	27	1	0	0	0	0	0	0	0	1	1426	233	9	4		4	BICC1	10	60560687	Silent	SNP	A	TCGA-2G-AAGE-01A-21D-A42Y-10		60560687	74974060	44	1786											
TNNT3	7140	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr11	1955860	1955860	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gacgcaagccgctcaacatcGatcaccttggtgaagacaaa	9	12	2	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_006757	exon13	c.G565T	p.D189Y	AACATCGATCACC		105	5	0.05	80	0	0				9	0	0				T	1955860	G	T	1955860	3	4	27	1	0	0	0	0	1	0	0	0	16391	1058	37	1	652	1	TNNT3	11	1955860	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10		1955860	133050656	45	1787											
ABCC8	6833	mdanderson.org	37	chr11	17482169	17482169	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcgcctcccgaaggcatGgctgagtgcctgccagatgg	15	13	0	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_000352	exon6	c.C877A	p.H293N	AGGCATGGCTGAG		40	3	0.08	49	0	0				0	0					T	17482169	G	T	17482169	3	4	27	1	0	0	0	0	1	0	0	0	58	1348	47	3	4004	3	ABCC8	11	17482169	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	15526309	17482169	117524347	46	1788											
VPS37C	55048	mdanderson.org	37	chr11	60901649	60901649	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctccggttggtggccagtgCcatctcccgttccagctgta	12	14	1	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_017966	exon3	c.G124A	p.A42T	CCAGTGCCATCTC		51	3	0.06	53	0	0				54	0	0				T	60901649	C	T	60901649	3	4	27	1	0	0	0	0	1	0	0	0	17266	739	26	2	955	2	VPS37C	11	60901649	Missense_Mutation	SNP	C	TCGA-2G-AAGE-01A-21D-A42Y-10	43419480	60901649	74104867	47	1789											
MARK2	2011	broad.mit.edu;mdanderson.org	37	chr11	63667568	63667568	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggatccctgccttttgatGgacagaacctcaaggtggag	13	10	1	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	MARK2	NM_001163296	exon8	c.G754T	p.G252X	TTTGATGGACAGA		112	5	0.04	98	0	0		91		47	0	0				T	63667568	G	T	63667568	4	4	27	1	0	0	0	0	0	1	0	0	9362	1349	47	3	784	3	MARK2	11	63667568	Nonsense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	2765919	63667568	71338948	48	1790											
TM7SF2	7108	broad.mit.edu	37	chr11	64880133	64880133	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgggcgctgctgctgtggCtcgcctggctcggcctgcag	16	15	0	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	TM7SF2	NM_003273	exon2	c.C199T	p.L67F	CTGTGGCTCGCCT		19	2	0.11	22	0	0		30		0	0					T	64880133	C	T	64880133	3	4	27	1	0	0	0	0	1	0	0	0	16033	797	28	2	205	2	TM7SF2	11	64880133	Missense_Mutation	SNP	C	TCGA-2G-AAGE-01A-21D-A42Y-10	1212565	64880133	70126383	49	1791											
PC	5091	mdanderson.org	37	chr11	66639224	66639224	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggggccaggccgcggccgatGagataggcttcatctgcttt	15	11	2	1	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_022172	exon3	c.C255A	p.L85L	GCCGATGAGATAG		42	3	0.07	41	0	0				10	0	0				T	66639224	G	T	66639224	2	4	27	1	0	0	0	0	0	0	0	1	11543	1277	45	3		3	PC	11	66639224	Silent	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	1759091	66639224	68367292	50	1792											
UNC93B1	81622	broad.mit.edu	37	chr11	67763107	67763107	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtccagtcttgttcagggcActgcccacaccccaaagggc	10	15	2	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	.	.	.	.	CAGGGCACTGCCC		118	8	0.07	74	1	0.0135135135				65	0	0				G	67763107	A	G	67763107	2	3	27	1	0	0	0	0	0	0	0	1	17056	156	6	4		4	UNC93B1	11	67763107	Silent	SNP	A	TCGA-2G-AAGE-01A-21D-A42Y-10	1123883	67763107	67243409	51	1793											
ACAT1	38	broad.mit.edu	37	chr11	108018054	108018054	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccttgaagcaaggagaataCggtcttgccagtatttgcaa	11	8	1	2	rs367713788		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	ACAT1,caecum,carcinoma,+1,1	ACAT1	NM_000019	exon12	c.C1221T	p.Y407Y	AGAATACGGTCTT		111	3	0.03	93	1	0.0107526882		35	1	80	0	0				T	108018054	C	T	108018054	2	4	27	1	0	0	0	0	0	0	0	1	121	547	19	1		1	ACAT1	11	108018054	Silent	SNP	C	TCGA-2G-AAGE-01A-21D-A42Y-10	40254947	108018054	26988462	52	1794											
APLP2	334	broad.mit.edu	37	chr11	129999082	129999082	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagaactacctggctgcctTgcagtctgacccgccacggg	13	14	1	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	APLP2	NM_001243299	exon10	c.T1466G	p.L489W	CTGCCTTGCAGTC		66	5	0.08	88	1	0.0113636364		71		508	0	0				G	129999082	T	G	129999082	3	3	27	1	0	0	0	0	1	0	0	0	776	1821	63	4	1474	4	APLP2	11	129999082	Missense_Mutation	SNP	T	TCGA-2G-AAGE-01A-21D-A42Y-10	21981028	129999082	5007434	53	1795											
TAS2R43	259289	ucsc.edu;bcgsc.ca	37	chr12	11244616	11244616	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	acactattaaaagctggattCaacacagttgaataccagtt	6	8	1	1	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	TAS2R43	NM_176884	exon1	c.G213C	p.L71F	TGGATTCAACACA		562	313	0.56	121	2	0.0165289256		19		0	0					G	11244616	C	G	11244616	3	3	27	1	0	0	0	0	1	0	0	0	15637	825	29	5	720	5	TAS2R43	12	11244616	Missense_Mutation	SNP	C	TCGA-2G-AAGE-01A-21D-A42Y-10		11244616	122607279	54	1796											
H1FNT	341567	mdanderson.org	37	chr12	48723627	48723627	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgaaagccaaggccaatgccAgggcgaggaggaccaggagg	17	10	0	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_181788	exon1	c.A553G	p.R185G	AATGCCAGGGCGA		58	3	0.05	39	0	0				0	0					G	48723627	A	G	48723627	3	3	27	1	0	0	0	0	1	0	0	0	6961	179	7	4	555	4	H1FNT	12	48723627	Missense_Mutation	SNP	A	TCGA-2G-AAGE-01A-21D-A42Y-10	37479011	48723627	85128268	55	1797											
RPH3A	22895	broad.mit.edu	37	chr12	113319619	113319619	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acggcttggctgatccctacGttaagctgcacctcctgccg	10	15	0	1	rs368476874	alternate_allele	TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	RPH3A	NM_001143854	exon15	c.G1294T	p.V432F	CCCTACGTTAAGC		108	4	0.04	96	1	0.0104166667		98		0	0					T	113319619	G	T	113319619	3	4	27	1	0	0	0	0	1	0	0	0	13602	1145	40	1	1344	1	RPH3A	12	113319619	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	64595992	113319619	20532276	56	1798											
NCOR2	9612	ucsc.edu	37	chr12	124887067	124887067	+	Missense_Mutation	SNP	T	T	G													tgcggggcatgggctgctgcTgctgctgctgctgctgctgc					novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	NCOR2	NM_006312	exon16	c.A1523C	p.Q508P	TGCTGCTGCTGCT		77	5	0.06	53	0	0		475		49	1	0.02				G	124887067	T	G	124887067	3	3	27	1	0	0	0	0	1	0	0	0	10282	1580	55	4	6181	4	NCOR2	12	124887067	Missense_Mutation	SNP	T	TCGA-2G-AAGE-01A-21D-A42Y-10	11567448	124887067	8964828	57	1799	4	3									
NCOR2	9612	broad.mit.edu;mdanderson.org	37	chr12	124887070	124887070	+	Missense_Mutation	SNP	T	T	G													ggggcatgggctgctgctgcTgctgctgctgctgctgctgc					novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	NCOR2	NM_006312	exon16	c.A1520C	p.Q507P	TGCTGCTGCTGCT		78	4	0.05	56	0	0		475		52	0	0				G	124887070	T	G	124887070	3	3	27	1	0	0	0	0	1	0	0	0	10282	1580	55	4	6184	4	NCOR2	12	124887070	Missense_Mutation	SNP	T	TCGA-2G-AAGE-01A-21D-A42Y-10	3	124887070	8964825	58	1800	4	3									
NCOR2	9612	ucsc.edu	37	chr12	124887073	124887073	+	Missense_Mutation	SNP	T	T	G													gcatgggctgctgctgctgcTgctgctgctgctgctgctgc					novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	NCOR2	NM_006312	exon16	c.A1517C	p.Q506P	TGCTGCTGCTGCT		77	7	0.09	50	1	0.02		475		49	7	0.14				G	124887073	T	G	124887073	3	3	27	1	0	0	0	0	1	0	0	0	10282	1580	55	4	6187	4	NCOR2	12	124887073	Missense_Mutation	SNP	T	TCGA-2G-AAGE-01A-21D-A42Y-10	3	124887073	8964822	59	1801	4	3									
LATS2	26524	broad.mit.edu	37	chr13	21562482	21562483	+	In_Frame_Ins	INS	-	-	GGGGCG													cgtccaagccctccgcagccINSggggcgggggcgggggcggg					rs10658032		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	LATS2	NM_014572	exon4	c.1437_1438insCGCCCC	p.P479delinsPAP	CGCAGCCGGGGCG		8	3	0.38	3	0	0		176		1	0	0				GGGGCG	21562483	-	GGGGCG	21562482	7	5	27	1	0	1	1	0	0	0	0	0	8685	639	23	0	1849	0	LATS2	13	21562482	In_Frame_Ins	INS	-	TCGA-2G-AAGE-01A-21D-A42Y-10		21562482	93607396	60	1802											
MYH7	4625	hgsc.bcm.edu;broad.mit.edu	37	chr14	23885334	23885334	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttcttcttcaccctcaggGcctcgttgcggctgcgtgtc	10	15	5	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	MYH7,NS,carcinoma,0,1	MYH7	NM_000257	exon34	c.C4832T	p.A1611V	CTCAGGGCCTCGT		119	6	0.05	123	1	0.0081300813		0	1	0	0					A	23885334	G	A	23885334	3	1	27	1	0	0	0	0	1	0	0	0	10086	1203	42	2	1003	2	MYH7	14	23885334	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10		23885334	83464206	61	1803											
DHRS4L1	728635	broad.mit.edu;mdanderson.org	37	chr14	24507059	24507059	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtggccacgctgcagggggAggggctgagcatgacgggca	20	9	0	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001082488	exon2	c.A236G	p.E79G	AGGGGGAGGGGCT		143	5	0.03	135	1	0.0074074074				1	0	0				G	24507059	A	G	24507059	1	3	27	0	1	0	0	0	0	0	0	0	4521	304	11	4		4	DHRS4L1	14	24507059	RNA	SNP	A	TCGA-2G-AAGE-01A-21D-A42Y-10	621725	24507059	82842481	62	1804											
TUBGCP4	27229	mdanderson.org	37	chr15	43678501	43678501	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggactttgaacaggtggtGgatcgcattcgcagcactgt	14	8	0	1	rs372242208	alternate_allele	TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_014444	exon9	c.G987T	p.V329V	GGTGGTGGATCGC		107	4	0.04	61	0	0				24	0	0				T	43678501	G	T	43678501	2	4	27	1	0	0	0	0	0	0	0	1	16829	1335	47	3		3	TUBGCP4	15	43678501	Silent	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10		43678501	58852891	63	1805											
DET1	55070	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr15	89056263	89056263	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaatagcgaaaggctcaaaAgggtgaaaggtgaaggcaac	14	5	1	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	DET1	NM_017996	exon6	c.T1605C	p.P535P	CTCAAAAGGGTGA		175	6	0.03	151	1	0.0066225166		55		22	0	0				G	89056263	A	G	89056263	2	3	27	1	0	0	0	0	0	0	0	1	4478	59	3	4		4	DET1	15	89056263	Silent	SNP	A	TCGA-2G-AAGE-01A-21D-A42Y-10	45377762	89056263	13475129	64	1806											
SLCO3A1	28232	mdanderson.org	37	chr15	92459545	92459545	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaccccgacctcatctgccGcaaccggacggctaccaaca	8	19	2	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	SLCO3A1,NS,malignant_melanoma,0,1	SLCO3A1	NM_013272	exon2	c.G503T	p.R168L	TCTGCCGCAACCG		58	3	0.05	50	0	0		0	1	6	0	0				T	92459545	G	T	92459545	3	4	27	1	0	0	0	0	1	0	0	0	14782	1087	38	1	509	1	SLCO3A1	15	92459545	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	3403282	92459545	10071847	65	1807											
SOLH	6650	mdanderson.org	37	chr16	597600	597600	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgacgcgaggttcccccccaGctgcagccaccggtgcctga	12	18	0	1	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_005632	exon4	c.G762T	p.Q254H	CCCCCAGCTGCAG		19	2	0.11	15	0	0				28	0	0				T	597600	G	T	597600	3	4	27	1	0	0	0	0	1	0	0	0	14978	962	34	2	764	2	SOLH	16	597600	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10		597600	89757153	66	1808											
SRRM2	23524	mdanderson.org	37	chr16	2817298	2817298	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaacagcagtgaacctgGctgactctcgaacgccagct	9	14	1	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_016333	exon11	c.G6769T	p.A2257S	AACCTGGCTGACT		64	9	0.14	49	3	0.0612244898				428	14	0.03				T	2817298	G	T	2817298	3	4	27	1	0	0	0	0	1	0	0	0	15224	1203	42	2	6807	2	SRRM2	16	2817298	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	2219698	2817298	87537455	67	1809											
CMTM2	146225	broad.mit.edu	37	chr16	66621965	66621965	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcagggcaagggaccagaAcccgccaagccaccagaacc	11	16	0	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	CMTM2,trunk,malignant_melanoma,+2,2	CMTM2	NM_144673	exon4	c.A690C	p.E230D	ACCAGAACCCGCC		91	17	0.19	64	13	0.203125		33	2	2	0	0				C	66621965	A	C	66621965	3	2	27	1	0	0	0	0	1	0	0	0	3606	40	2	4	704	4	CMTM2	16	66621965	Missense_Mutation	SNP	A	TCGA-2G-AAGE-01A-21D-A42Y-10	63804667	66621965	23732788	68	1810											
THAP11	57215	broad.mit.edu	37	chr16	67876781	67876781	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcaggcagcagcagcaacaGcagcagcagcagcaacagca	12	14	0	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	THAP11	NM_020457	exon1	c.G324A	p.Q108Q	GCAACAGCAGCAG		67	3	0.04	41	1	0.0243902439		27		60	0	0				A	67876781	G	A	67876781	2	1	27	1	0	0	0	0	0	0	0	1	15902	962	34	2		2	THAP11	16	67876781	Silent	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	1254816	67876781	22477972	69	1811											
ARRB2	409	broad.mit.edu	37	chr17	4619841	4619841	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaacccaccccggccccccAcccgcctgcaggaccggctg	9	24	0	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	ARRB2	NM_001257329	exon5	c.A295C	p.T99P	CCCCCCACCCGCC		48	8	0.17	27	2	0.0740740741		30		30	0	0				C	4619841	A	C	4619841	3	2	27	1	0	0	0	0	1	0	0	0	980	159	6	4	313	4	ARRB2	17	4619841	Missense_Mutation	SNP	A	TCGA-2G-AAGE-01A-21D-A42Y-10		4619841	76575369	70	1812											
PITPNM3	83394	mdanderson.org	37	chr17	6381975	6381975	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtactgcggggaggagatGgccaacaggggaagggcggc	21	7	0	1	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_031220	exon7	c.C669A	p.A223A	GGAGATGGCCAAC		58	3	0.05	64	0	0				3	0	0				T	6381975	G	T	6381975	2	4	27	1	0	0	0	0	0	0	0	1	11999	1335	47	3		3	PITPNM3	17	6381975	Silent	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	1762134	6381975	74813235	71	1813											
CCDC144B	284047	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr17	18528523	18528523	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgtggagctcgccaagatCttccaggcggacgtcgtgct	13	12	2	1	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	.	.	.	.	CAAGATCTTCCAG		231	67	0.29	169	0	0				2	0	0				T	18528523	C	T	18528523	1	4	27	0	1	0	0	0	0	0	0	0	2796	913	32	3		3	CCDC144B	17	18528523	RNA	SNP	C	TCGA-2G-AAGE-01A-21D-A42Y-10	12146548	18528523	62666687	72	1814											
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	29527570	29527570	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	catcaattgggaagataactCtgtcattttcctacttgttc	6	9	3	1	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001128147	exon9	c.C1019G	p.S340C	ATAACTCTGTCAT		78	21	0.27	59	0	0				3	2	0.67				G	29527570	C	G	29527570	3	3	27	1	0	0	0	0	1	0	0	0	10402	913	32	5	1053	5	NF1	17	29527570	Missense_Mutation	SNP	C	TCGA-2G-AAGE-01A-21D-A42Y-10	10999047	29527570	51667640	73	1815											
ITGB3	3690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	45376796	45376796	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgctgtgcagcggccgcGgcaagtgtgaatgtggcagc	18	10	0	1	rs144884023		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_000212	exon11	c.G1813A	p.G605S	GGCCGCGGCAAGT		143	37	0.26	105	0	0	0			1	0	0				A	45376796	G	A	45376796	3	1	27	1	0	0	0	0	1	0	0	0	7938	1116	39	1	1855	1	ITGB3	17	45376796	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	15849226	45376796	35818414	74	1816											
SLC16A6	9120	broad.mit.edu	37	chr17	66270087	66270087	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagagatgatgccgatggcGacgtacatatgagaaacctc	11	10	0	3	rs201209320	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	SLC16A6	NM_001174166	exon4	c.C357A	p.V119V	GATGGCGACGTAC		120	4	0.03	101	0	0		56		2	0	0				T	66270087	G	T	66270087	2	4	27	1	0	0	0	0	0	0	0	1	14466	1045	37	1		1	SLC16A6	17	66270087	Silent	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	20893291	66270087	14925123	75	1817											
KIAA0195	9772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	73484174	73484174	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggagacatcatagctttgAggcctggccaggaatcgttt	12	8	1	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_014738	exon6	c.A571T	p.R191W	GCTTTGAGGCCTG		147	41	0.28	104	0	0				27	7	0.26				T	73484174	A	T	73484174	3	4	27	1	0	0	0	0	1	0	0	0	8201	295	11	5	589	5	KIAA0195	17	73484174	Missense_Mutation	SNP	A	TCGA-2G-AAGE-01A-21D-A42Y-10	7214087	73484174	7711036	76	1818											
ZBTB7C	201501	mdanderson.org	37	chr18	45555801	45555801	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcgttcctctcagcctccaGctgcgcgcgcccgaacagct	10	19	1	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001039360	exon3	c.C1690A	p.L564M	CCTCCAGCTGCGC		20	3	0.15	20	0	0				0	0					T	45555801	G	T	45555801	3	4	27	1	0	0	0	0	1	0	0	0	17613	962	34	2	173	2	ZBTB7C	18	45555801	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10		45555801	32521447	77	1819											
CSNK1G2	1455	broad.mit.edu	37	chr19	1969878	1969878	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catccggagctcggggaccaGctcgggggtcctgatggtgg	18	11	0	1	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	CSNK1G2	NM_001319	exon2	c.G107T	p.S36I	GGACCAGCTCGGG		34	3	0.09	39	1	0.0256410256		28		29	0	0				T	1969878	G	T	1969878	3	4	27	1	0	0	0	0	1	0	0	0	3980	971	34	2	109	2	CSNK1G2	19	1969878	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10		1969878	57159105	78	1820											
TMPRSS9	360200	mdanderson.org	37	chr19	2424093	2424093	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctcccccgcagactgtgGcctggcgccggccgcgctca	14	18	1	1	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_182973	exon14	c.G2453T	p.G818V	ACTGTGGCCTGGC		20	2	0.1	15	0	0				0	0					T	2424093	G	T	2424093	3	4	27	1	0	0	0	0	1	0	0	0	16312	1203	42	2	2507	2	TMPRSS9	19	2424093	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	454215	2424093	56704890	79	1821											
LRP3	4037	mdanderson.org	37	chr19	33698411	33698411	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagagccactgggggtctGcaggaaccccccgcccccct	12	19	1	1	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_002333	exon7	c.G2243T	p.C748F	GGGTCTGCAGGAA		18	2	0.11	23	0	0				55	0	0				T	33698411	G	T	33698411	3	4	27	1	0	0	0	0	1	0	0	0	9002	1319	46	2	2269	2	LRP3	19	33698411	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	31274318	33698411	25430572	80	1822											
ETV2	2116	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	36134398	36134398	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccgccgggagcaacaccaGctgggactgttctgtggggc	17	12	1	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_014209	exon5	c.G458A	p.S153N	ACACCAGCTGGGA		105	8	0.08	90	0	0				0	0					A	36134398	G	A	36134398	3	1	27	1	0	0	0	0	1	0	0	0	5306	971	34	2	472	2	ETV2	19	36134398	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	2435987	36134398	22994585	81	1823											
MLL4	8085	mdanderson.org	37	chr19	36213935	36213935	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agactgagagtgtcccgtcaCggtcccggcggggaaaggtg	17	10	1	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_014727	exon6	c.C2761T	p.R921W	CCGTCACGGTCCC		51	3	0.06	47	0	0				36	0	0				T	36213935	C	T	36213935	3	4	27	1	0	0	0	0	1	0	0	0	9670	527	19	1	2783	1	MLL4	19	36213935	Missense_Mutation	SNP	C	TCGA-2G-AAGE-01A-21D-A42Y-10	79537	36213935	22915048	82	1824											
RYR1	6261	mdanderson.org	37	chr19	38956756	38956756	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgagcaatgggtacaagCcggctccgctggacctgagc	14	11	0	3	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001042723	exon24	c.C2896A	p.P966T	TACAAGCCGGCTC		24	3	0.13	34	0	0				2	0	0				A	38956756	C	A	38956756	3	1	27	1	0	0	0	0	1	0	0	0	13819	739	26	2	2990	2	RYR1	19	38956756	Missense_Mutation	SNP	C	TCGA-2G-AAGE-01A-21D-A42Y-10	2742821	38956756	20172227	83	1825											
SUPT5H	6829	mdanderson.org	37	chr19	39964105	39964105	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acgcccctgcatgatggcagCcgcactcctgcccagagtgg	12	16	0	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001111020	exon25	c.C2436T	p.S812S	TGGCAGCCGCACT		43	3	0.07	44	0	0				180	0	0				T	39964105	C	T	39964105	2	4	27	1	0	0	0	0	0	0	0	1	15454	738	26	2		2	SUPT5H	19	39964105	Silent	SNP	C	TCGA-2G-AAGE-01A-21D-A42Y-10	1007349	39964105	19164878	84	1826											
ZNF285	26974	bcgsc.ca	37	chr19	44892228	44892228	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaggtaacttaacccctttGcctgaagattcaaaatgttg	7	8	1	2	rs117953191	bycluster;byfrequency	TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	ZNF285	NM_152354	exon4	c.C179G	p.A60G	CCCTTTGCCTGAA		197	18	0.09	151	5	0.0331125828		86		3	0	0				C	44892228	G	C	44892228	3	2	27	1	0	0	0	0	1	0	0	0	17879	1319	46	5	1597	5	ZNF285	19	44892228	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	4928123	44892228	14236755	85	1827											
BRSK1	84446	mdanderson.org	37	chr19	55817676	55817676	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttcagggccgagtacaaGgccagtggcggcccctccgt	14	14	1	0	rs12973169	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_032430	exon17	c.G1947T	p.K649N	GTACAAGGCCAGT		94	4	0.04	112	0	0				3	0	0				T	55817676	G	T	55817676	3	4	27	1	0	0	0	0	1	0	0	0	1525	991	35	3	2013	3	BRSK1	19	55817676	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	10925448	55817676	3311307	86	1828											
JPH2	57158	mdanderson.org	37	chr20	42788847	42788847	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagccgccacgcgggatggCgggcgagggcagcgcggggc	22	12	0	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_020433	exon2	c.G580A	p.A194T	GGATGGCGGGCGA		16	2	0.13	9	0	0				0	0					T	42788847	C	T	42788847	3	4	27	1	0	0	0	0	1	0	0	0	8004	768	27	1	1526	1	JPH2	20	42788847	Missense_Mutation	SNP	C	TCGA-2G-AAGE-01A-21D-A42Y-10		42788847	20236673	87	1829											
NEURL2	140825	broad.mit.edu	37	chr20	44519365	44519365	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgggggccagactggcggggTccagcgcggtcagaccgaga	19	12	1	3	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	NEURL2	.	.	.	.	GCGGGGTCCAGCG		119	17	0.14	81	10	0.1234567901		14		4	1	0.25				G	44519365	T	G	44519365	3	3	27	1	0	0	0	0	1	0	0	0	10392	1667	58	4	599	4	NEURL2	20	44519365	Missense_Mutation	SNP	T	TCGA-2G-AAGE-01A-21D-A42Y-10	1730518	44519365	18506155	88	1830											
PRPF6	24148	mdanderson.org	37	chr20	62657364	62657364	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaatgatgagtacgagcggGcccggaggctgctggccaag	17	9	0	3	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_012469	exon15	c.G1981T	p.A661S	GAGCGGGCCCGGA		32	3	0.09	40	0	0				276	0	0				T	62657364	G	T	62657364	3	4	27	1	0	0	0	0	1	0	0	0	12625	1203	42	2	2039	2	PRPF6	20	62657364	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	18137999	62657364	368156	89	1831											
PRMT2	3275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	48071767	48071767	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccctgcacctgtgcgtctgGccctcttcacgtcctcctgg	9	19	3	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001242865	exon7	c.G704A	p.G235D	CGTCTGGCCCTCT		170	34	0.2	143	0	0				1	0	0				A	48071767	G	A	48071767	3	1	27	1	0	0	0	0	1	0	0	0	12588	1218	42	2		2	PRMT2	21	48071767	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10		48071767	58128	90	1832											
EMID1	129080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	29622540	29622540	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaggtgctggaggccaaGgtgggtgagcagctccctcc	16	11	0	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_133455	exon5	c.G465C	p.K155N	GGCCAAGGTGGGT		38	17	0.45	54	0	0				4	0	0				C	29622540	G	C	29622540	3	2	27	1	0	0	0	0	1	0	0	0	5119	1014	35	5	483	5	EMID1	22	29622540	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10		29622540	21682026	91	1833											
MAPK11	5600	mdanderson.org	37	chr22	50708640	50708640	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgccggagcccaccgggcGcagcccctgcagccgctgcg	16	19	0	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_002751	exon1	c.C82T	p.R28C	CCGGGCGCAGCCC		20	3	0.15	16	0	0				4	0	0				A	50708640	G	A	50708640	3	1	27	1	0	0	0	0	1	0	0	0	9322	1087	38	1	1060	1	MAPK11	22	50708640	Missense_Mutation	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	21086100	50708640	595926	92	1834											
MAPK8IP2	23542	mdanderson.org	37	chr22	51041788	51041788	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agaggaggaggaggaggaggAgggagatggggaaggccagg	25	2	0	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	.	.	.	.	AGGAGGAGGGAGA		46	3	0.07	35	0	0				3	0	0				G	51041788	A	G	51041788	3	3	27	1	0	0	0	0	1	0	0	0	9334	304	11	4	408	4	MAPK8IP2	22	51041788	Missense_Mutation	SNP	A	TCGA-2G-AAGE-01A-21D-A42Y-10	333148	51041788	262778	93	1835											
PCYT1B	9468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	24665186	24665186	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaagggattttgggatacCtgtttctgactcagcatcag	12	7	3	1	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_004845	exon1	c.G37A	p.G13S	GGATACCTGTTTC		177	74	0.42	91	0	0				2	0	0				T	24665186	C	T	24665186	3	4	27	1	0	0	0	0	1	0	0	0	11657	681	24	3	1141	3	PCYT1B	23	24665186	Missense_Mutation	SNP	C	TCGA-2G-AAGE-01A-21D-A42Y-10		24665186	130605374	94	1836											
ARX	170302	mdanderson.org	37	chrX	25025374	25025374	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggcggcggcggcggcggcGgcagcggcagtccaagcgga	21	12	0	0	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_139058	exon4	c.C1302T	p.A434A	GGCGGCGGCAGCG		20	2	0.1	14	0	0				4	0	0				A	25025374	G	A	25025374	2	1	27	1	0	0	0	0	0	0	0	1	1003	1103	39	1		1	ARX	23	25025374	Silent	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	360188	25025374	130245186	95	1837											
MAGEC1	9947	broad.mit.edu	37	chrX	140995247	140995247	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagagtgctcctgagggggAggattccctgtctcctctcc	13	12	2	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	MAGEC1	NM_005462	exon4	c.A2057G	p.E686G	AGGGGGAGGATTC		236	6	0.03	150	2	0.0133333333		317		0	0					G	140995247	A	G	140995247	3	3	27	1	0	0	0	0	1	0	0	0	9229	304	11	4	2063	4	MAGEC1	23	140995247	Missense_Mutation	SNP	A	TCGA-2G-AAGE-01A-21D-A42Y-10	115969873	140995247	14275313	96	1838											
MAGEA10	4109	hgsc.bcm.edu	37	chrX	151303919	151303919	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatagcaggaggaggaggaGgaagaggaggaggagggaaa	23	1	0	1	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_001011543	exon5	c.C174T	p.S58S	GGAGGAGGAAGAG		98	4	0.04	56	0	0				0	0					A	151303919	G	A	151303919	2	1	27	1	0	0	0	0	0	0	0	1	9209	987	35	3		3	MAGEA10	23	151303919	Silent	SNP	G	TCGA-2G-AAGE-01A-21D-A42Y-10	10308672	151303919	3966641	97	1839											
PNMA3	29944	broad.mit.edu	37	chrX	152226011	152226011	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggcaggtgcccgagggggAaaagaggcggaggctgatgg	22	6	0	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	PNMA3	NM_013364	exon2	c.A599G	p.E200G	AGGGGGAAAAGAG		74	17	0.23	28	4	0.1428571429		81		2	0	0				G	152226011	A	G	152226011	3	3	27	1	0	0	0	0	1	0	0	0	12202	246	9	4	601	4	PNMA3	23	152226011	Missense_Mutation	SNP	A	TCGA-2G-AAGE-01A-21D-A42Y-10	922092	152226011	3044549	98	1840											
USP9Y	8287	mdanderson.org	37	chrY	14952390	14952390	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agctaactattgcaagacccCatcagatcattatgtcacca	5	12	3	2	novel		TCGA-2G-AAGE-01A-21D-A42Y-10	TCGA-2G-AAGE-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	588b4862-5bb8-4ce6-86b5-bd21313c181a	6f466e61-7d52-46f3-b357-9e24c1509fa9	.	.	NM_004654	exon36	c.C5938T	p.H1980Y	AGACCCCATCAGA		50	4	0.08	48	0	0				5	0	0				T	14952390	C	T	14952390	3	4	27	1	0	0	0	0	1	0	0	0	17150	594	21	3	6072	3	USP9Y	24	14952390	Missense_Mutation	SNP	C	TCGA-2G-AAGE-01A-21D-A42Y-10		14952390	44421176	99	1841											
MAP3K6	9064	mdanderson.org	37	chr1	27684931	27684931	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagggccgtggagcatgtcGtggggagctggggctgcggc	22	8	0	1	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_004672	exon20	c.C2755A	p.R919R	CATGTCGTGGGGA		41	3	0.07	38	0	0				18	0	0				T	27684931	G	T	27684931	2	4	28	1	0	0	0	0	0	0	0	1	9303	1153	40	1		1	MAP3K6	1	27684931	Silent	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10		27684931	221565690	1	1842											
SERINC2	347735	broad.mit.edu	37	chr1	31897662	31897662	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cggccttcttcttctttttcAccctgctcatgctctgcgtg	7	15	6	0	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	SERINC2	NM_001199038	exon4	c.A361C	p.T121P	TTTTTCACCCTGC		97	21	0.22	112	19	0.1696428571		44		18	1	0.06				C	31897662	A	C	31897662	3	2	28	1	0	0	0	0	1	0	0	0	14133	159	6	4	344	4	SERINC2	1	31897662	Missense_Mutation	SNP	A	TCGA-2G-AAGF-01A-31D-A42Y-10	4212731	31897662	217352959	2	1843											
KCNA10	3744	broad.mit.edu	37	chr1	111060761	111060761	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caccgagaccacggccacagCacgggcagcgctggaacttt	12	15	0	1	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	KCNA10	NM_005549	exon1	c.G649A	p.A217T	CCACAGCACGGGC		189	4	0.02	155	0	0		92		0	0					T	111060761	C	T	111060761	3	4	28	1	0	0	0	0	1	0	0	0	8045	710	25	2	890	2	KCNA10	1	111060761	Missense_Mutation	SNP	C	TCGA-2G-AAGF-01A-31D-A42Y-10	79163099	111060761	138189860	3	1844											
FAM129A	116496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	184767257	184767257	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgatgtaaaatctcctcaTagacattttcaacgtgaatc	5	9	4	3	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_052966	exon13	c.A1622T	p.Y541F	TCCTCATAGACAT		54	17	0.31	64	0	0				3	0	0				A	184767257	T	A	184767257	3	1	28	1	0	0	0	0	1	0	0	0	5467	1406	49	5	1172	5	FAM129A	1	184767257	Missense_Mutation	SNP	T	TCGA-2G-AAGF-01A-31D-A42Y-10	73706496	184767257	64483364	4	1845											
NT5C1B	93034	broad.mit.edu	37	chr2	18765888	18765888	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cgctgctgctgctgctgctcGgacagagagttgcggtccag	15	12	0	1	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	NT5C1B	NM_001199087	exon5	c.C846G	p.S282S	CTGCTCGGACAGA		57	3	0.05	54	1	0.0185185185		72		0	0					C	18765888	G	C	18765888	2	2	28	1	0	0	0	0	0	0	0	1	10733	1103	39	5		5	NT5C1B	2	18765888	Silent	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10		18765888	224433485	5	1846											
APOB	338	mdanderson.org	37	chr2	21256356	21256356	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggaggtgatgtggatttGgtgctctcaaatgcgaggcc	15	6	1	1	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_000384	exon9	c.C939A	p.T313T	GGATTTGGTGCTC		51	3	0.06	47	0	0				0	0					T	21256356	G	T	21256356	2	4	28	1	0	0	0	0	0	0	0	1	782	1335	47	3		3	APOB	2	21256356	Silent	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	2490468	21256356	221943017	6	1847											
SMYD5	10322	ucsc.edu	37	chr2	73453042	73453042	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaggagagccagaagatGcagagctgggggatgagatg	19	4	0	5	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	SMYD5	NM_006062	exon13	c.G1225T	p.A409S	GAAGATGCAGAGC		39	4	0.1	28	0	0		58		53	0	0				T	73453042	G	T	73453042	3	4	28	1	0	0	0	0	1	0	0	0	14878	1319	46	2	1275	2	SMYD5	2	73453042	Missense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	52196686	73453042	169746331	7	1848											
RAF1	5894	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	12641718	12641718	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgctggcacgggggttttcGgctgtgaccagcctgttggg	18	9	0	1	rs5746220	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_002880	exon9	c.C923T	p.P308L	GTTTTCGGCTGTG		143	36	0.25	114	0	0	0.009			142	39	0.27				A	12641718	G	A	12641718	3	1	28	1	0	0	0	0	1	0	0	0	13053	1116	39	1	1059	1	RAF1	3	12641718	Missense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10		12641718	185380712	8	1849											
IP6K2	51447	mdanderson.org	37	chr3	48727074	48727074	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aagcatcatcaccatgttgtCgtgtgcccatcttgaggtca	9	11	4	1	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_016291	exon5	c.G677A	p.R226Q	TGTTGTCGTGTGC		74	4	0.05	63	0	0				386	0	0				T	48727074	C	T	48727074	3	4	28	1	0	0	0	0	1	0	0	0	7832	884	31	1	611	1	IP6K2	3	48727074	Missense_Mutation	SNP	C	TCGA-2G-AAGF-01A-31D-A42Y-10	36085356	48727074	149295356	9	1850											
PCDH10	57575	hgsc.bcm.edu;mdanderson.org	37	chr4	134072954	134072954	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgctggcagcccccaggcGctggctggtaacgccactgt	14	15	0	0	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	PCDH10,NS,carcinoma,+2,1	PCDH10	NM_032961	exon1	c.G1659T	p.A553A	CCAGGCGCTGGCT		46	3	0.07	80	0	0		2	1	5	0	0				T	134072954	G	T	134072954	2	4	28	1	0	0	0	0	0	0	0	1	11553	1074	38	1		1	PCDH10	4	134072954	Silent	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10		134072954	57081322	10	1851											
TMEM144	55314	mdanderson.org	37	chr4	159161570	159161570	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctgaagcagtcctaccaGgtaagaatatgtactacaga	8	9	0	3	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_018342	exon10	c.G802T	p.G268X	CTACCAGGTAAGA		55	3	0.05	67	0	0				5	0	0				T	159161570	G	T	159161570	4	4	28	1	0	0	0	0	0	1	0	0	16117	1014	35	3	832	3	TMEM144	4	159161570	Nonsense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	25088616	159161570	31992706	11	1852											
NEK1	4750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	170345935	170345935	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacatttagagtgctgagaAtcattggttccaggctctgt	10	8	3	2	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001199397	exon31	c.T2991G	p.D997E	CTGAGAATCATTG		93	9	0.1	86	0	0				6	1	0.17				C	170345935	A	C	170345935	3	2	28	1	0	0	0	0	1	0	0	0	10367	98	4	4	893	4	NEK1	4	170345935	Missense_Mutation	SNP	A	TCGA-2G-AAGF-01A-31D-A42Y-10	11184365	170345935	20808341	12	1853											
HLA-A	3105	hgsc.bcm.edu	37	chr6	29911272	29911272	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tggatggcacgtgcgtggagTggctccgcagatacctggag	17	9	0	1	rs76185201	bycluster;byfrequency;by1000genomes	TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	HLA-A,colon,carcinoma,0,1	HLA-A	NM_001242758	exon3	c.T571A	p.W191R	GTGGAGTGGCTCC		90	6	0.07	67	1	0.0149253731	0.001	0	1	1252	0	0				A	29911272	T	A	29911272	3	1	28	1	0	0	0	0	1	0	0	0	7235	1696	59	5	581	5	HLA-A	6	29911272	Missense_Mutation	SNP	T	TCGA-2G-AAGF-01A-31D-A42Y-10		29911272	141203795	13	1854											
TMEM30A	55754	mdanderson.org	37	chr6	75994279	75994279	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ggccgtgttatccggtctccGagtcttcgcggtgccccccg	13	16	2	0	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001143958	exon1	c.C76A	p.R26R	GTCTCCGAGTCTT		42	3	0.07	34	0	0				13	0	0				T	75994279	G	T	75994279	2	4	28	1	0	0	0	0	0	0	0	1	16212	1057	37	1		1	TMEM30A	6	75994279	Silent	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	46083007	75994279	95120788	14	1855											
SF3B5	83443	ucsc.edu	37	chr6	144416537	144416537	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acgagtcgcggtgttggttcAccagccactcccacttggtg	12	13	1	0	rs199548273	bycluster;byfrequency	TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	SF3B5	NM_031287	exon1	c.T98G	p.V33G	TGGTTCACCAGCC		94	21	0.22	96	18	0.1875		6		652	107	0.16				C	144416537	A	C	144416537	3	2	28	1	0	0	0	0	1	0	0	0	14207	159	6	4	166	4	SF3B5	6	144416537	Missense_Mutation	SNP	A	TCGA-2G-AAGF-01A-31D-A42Y-10	68422258	144416537	26698530	15	1856											
AKAP12	9590	mdanderson.org	37	chr6	151673962	151673962	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcccacagggcccgactGtcaggcaaaatcgacaccag	11	14	1	0	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_005100	exon4	c.G4436T	p.C1479F	CCGACTGTCAGGC		29	3	0.1	31	0	0				143	0	0				T	151673962	G	T	151673962	3	4	28	1	0	0	0	0	1	0	0	0	445	1377	48	3	4475	3	AKAP12	6	151673962	Missense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	7257425	151673962	19441105	16	1857											
UNC93A	54346	ucsc.edu	37	chr6	167728900	167728901	+	Missense_Mutation	DNP	TC	TC	CG													accccacgctccaggacaggTcaaccaggcagaggatgaag					novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	TC	TC					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	UNC93A,ear,carcinoma,+1,2	UNC93A	NM_018974	exon8	c.C1335G	p.V445A	GACAGGTCAACCA		43	5	0.12	69	8	0.115942029		66	2	3	0	0				CG	167728901	TC	CG	167728900	3	2	28	1	0	0	0	0	1	0	0	0	17055	1667	58	4	1364	4	UNC93A	6	167728900	Missense_Mutation	DNP	TC	TCGA-2G-AAGF-01A-31D-A42Y-10	16054938	167728900	3386167	17	1858											
CDK14	5218	mdanderson.org	37	chr7	90741978	90741978	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttagtgacctgccgccacggCtatgggaactcaccgacagt	11	13	1	1	rs200612683	by1000genomes;alternate_allele	TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_012395	exon12	c.C1222T	p.L408L	CCACGGCTATGGG		38	3	0.08	49	0	0				11	0	0				T	90741978	C	T	90741978	2	4	28	1	0	0	0	0	0	0	0	1	3152	796	28	2		2	CDK14	7	90741978	Silent	SNP	C	TCGA-2G-AAGF-01A-31D-A42Y-10		90741978	68396685	18	1859											
TRIP6	7205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr7	100466178	100466178	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	cctgaagccaaatccagcctCgccgctcccagcgtctccct	7	20	1	1	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_003302	exon4	c.C425A	p.S142X	CAGCCTCGCCGCT		65	19	0.29	54	0	0				184	12	0.07				A	100466178	C	A	100466178	4	1	28	1	0	0	0	0	0	1	0	0	16619	893	31	1	439	1	TRIP6	7	100466178	Nonsense_Mutation	SNP	C	TCGA-2G-AAGF-01A-31D-A42Y-10	9724200	100466178	58672485	19	1860											
RELN	5649	mdanderson.org	37	chr7	103191524	103191524	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtccttacccacaaaggtGcagcttcccaaagtgcacga	10	13	0	0	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_005045	exon41	c.C6292A	p.H2098N	AAAGGTGCAGCTT		37	3	0.08	40	0	0				0	0					T	103191524	G	T	103191524	3	4	28	1	0	0	0	0	1	0	0	0	13271	1319	46	2	4190	2	RELN	7	103191524	Missense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	2725346	103191524	55947139	20	1861											
PUS7	54517	ucsc.edu	37	chr7	105098245	105098245	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acaaggtactgctcagcgaaGccaggttgtattcagctgcg	12	10	2	0	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	PUS7	NM_019042	exon16	c.C1978T	p.L660F	AGCGAAGCCAGGT		73	1	0.01	78	0	0		59		31	4	0.13				A	105098245	G	A	105098245	3	1	28	1	0	0	0	0	1	0	0	0	12884	971	34	2	11	2	PUS7	7	105098245	Missense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	1906721	105098245	54040418	21	1862											
CSMD1	64478	hgsc.bcm.edu	37	chr8	3226879	3226879	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactcttcccttggatgtaGcctccacatagagcttaaaa	6	13	1	1	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_033225	exon19	c.C2796A	p.G932G	GATGTAGCCTCCA		106	5	0.05	75	0	0				0	0					T	3226879	G	T	3226879	2	4	28	1	0	0	0	0	0	0	0	1	3969	958	34	2		2	CSMD1	8	3226879	Silent	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10		3226879	143137143	22	1863											
EYA1	2138	mdanderson.org	37	chr8	72111599	72111599	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtactccagttccaaggcAtggtgcagggccatgaggtc	14	10	0	1	rs10103397	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_000503	exon18	c.T1755A	p.H585Q	CAAGGCATGGTGC		51	3	0.06	25	0	0				4	0	0				T	72111599	A	T	72111599	3	4	28	1	0	0	0	0	1	0	0	0	5356	214	8	5	27	5	EYA1	8	72111599	Missense_Mutation	SNP	A	TCGA-2G-AAGF-01A-31D-A42Y-10	68884720	72111599	74252423	23	1864											
COL22A1	169044	mdanderson.org	37	chr8	139712365	139712365	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tactacttacgggcatccgtGgatgtggtgtgaacagggat	14	7	0	1	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_152888	exon32	c.C2582A	p.P861Q	ATCCGTGGATGTG		13	2	0.15	32	0	0				3	0	0				T	139712365	G	T	139712365	3	4	28	1	0	0	0	0	1	0	0	0	3704	1348	47	3	2434	3	COL22A1	8	139712365	Missense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	67600766	139712365	6651657	24	1865											
PYCRL	65263	mdanderson.org	37	chr8	144687882	144687882	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agcccagcctactttctgctGagctccttggcccggcaggt	11	15	1	1	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_023078	exon6	c.C849A	p.L283L	TCTGCTGAGCTCC		42	3	0.07	41	0	0				17	0	0				T	144687882	G	T	144687882	2	4	28	1	0	0	0	0	0	0	0	1	12908	1277	45	3		3	PYCRL	8	144687882	Silent	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	4975517	144687882	1676140	25	1866											
ADCK5	203054	mdanderson.org	37	chr8	145617338	145617338	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagcggagctggtgctgctGgaccacgggctctaccagtt	14	11	1	0	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_174922	exon11	c.G1143T	p.L381L	GCTGCTGGACCAC		46	3	0.07	37	0	0				26	0	0				T	145617338	G	T	145617338	2	4	28	1	0	0	0	0	0	0	0	1	290	1335	47	3		3	ADCK5	8	145617338	Silent	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	929456	145617338	746684	26	1867											
DAB2IP	153090	mdanderson.org	37	chr9	124535377	124535377	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctgagggccacagctcccTgagctcacacagcaacagcg	10	16	2	2	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_032552	exon12	c.T2486A	p.L829Q	GCTCCCTGAGCTC		30	3	0.1	39	0	0				12	0	0				A	124535377	T	A	124535377	3	1	28	1	0	0	0	0	1	0	0	0	4243	1580	55	5	2532	5	DAB2IP	9	124535377	Missense_Mutation	SNP	T	TCGA-2G-AAGF-01A-31D-A42Y-10		124535377	16678054	27	1868											
CEL	1056	hgsc.bcm.edu	37	chr9	135947115	135947116	+	Missense_Mutation	DNP	CA	CA	TG													gtgccccccacagatgactcCaaggaagctcagatgcctgc					novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	CA	CA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001807	exon11	c.A2236G	p.K746E	TGACTCCAAGGAA		73	11	0.15	53	0	0				8	0	0				TG	135947116	CA	TG	135947115	3	4	28	1	0	0	0	0	1	0	0	0	3231	581	21	3	2277	3	CEL	9	135947115	Missense_Mutation	DNP	CA	TCGA-2G-AAGF-01A-31D-A42Y-10	11411738	135947115	5266316	28	1869											
DBH	1621	mdanderson.org	37	chr9	136501645	136501645	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagccccctcccctatcacaTccccctggacccggaggggt	10	19	1	0	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_000787	exon1	c.T152C	p.I51T	ATCACATCCCCCT		47	4	0.09	42	0	0				0	0					C	136501645	T	C	136501645	3	2	28	1	0	0	0	0	1	0	0	0	4274	1435	50	4	154	4	DBH	9	136501645	Missense_Mutation	SNP	T	TCGA-2G-AAGF-01A-31D-A42Y-10	554530	136501645	4711786	29	1870											
GAD2	2572	mdanderson.org	37	chr10	26581439	26581439	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgataaatgtttggagttgGcagagtatttatacaacatc	9	4	0	2	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_000818	exon14	c.G1432T	p.A478S	GAGTTGGCAGAGT		50	3	0.06	86	0	0				10	0	0				T	26581439	G	T	26581439	3	4	28	1	0	0	0	0	1	0	0	0	6214	1203	42	2	1486	2	GAD2	10	26581439	Missense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10		26581439	108953308	30	1871											
LRIT2	340745	mdanderson.org	37	chr10	85985212	85985212	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatcctggcagacagaaaGgctgagctgcgtgtgtatcc	13	10	0	3	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001017924	exon1	c.C65A	p.P22H	CAGAAAGGCTGAG		54	3	0.06	61	0	0				0	0					T	85985212	G	T	85985212	3	4	28	1	0	0	0	0	1	0	0	0	8992	1000	35	3	1599	3	LRIT2	10	85985212	Missense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	59403773	85985212	49549535	31	1872											
SLIT1	6585	mdanderson.org	37	chr10	98778349	98778349	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaggtaactcacgtgaacGgggcatcctcgccctcctgt	10	15	1	1	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_003061	exon28	c.C2963A	p.P988Q	GTGAACGGGGCAT		50	3	0.06	69	0	0				0	0					T	98778349	G	T	98778349	3	4	28	1	0	0	0	0	1	0	0	0	14792	1116	39	1	1681	1	SLIT1	10	98778349	Missense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	12793137	98778349	36756398	32	1873											
DUSP8	1850	mdanderson.org	37	chr11	1579110	1579110	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggagatgccagccagacaGtggacgatgacttggcagct	15	10	0	3	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_004420	exon6	c.C735T	p.H245H	CAGACAGTGGACG		43	3	0.07	50	0	0				37	0	0				A	1579110	G	A	1579110	2	1	28	1	0	0	0	0	0	0	0	1	4857	1020	36	3		3	DUSP8	11	1579110	Silent	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10		1579110	133427406	33	1874											
GTF2H1	2965	mdanderson.org	37	chr11	18354649	18354649	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcatctgaagaagttttgCtgattgtaaagaaagtgcgt	10	6	2	4	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001142307	exon3	c.C28A	p.L10M	GTTTTGCTGATTG		19	2	0.11	41	0	0				10	0	0				A	18354649	C	A	18354649	3	1	28	1	0	0	0	0	1	0	0	0	6900	796	28	2	30	2	GTF2H1	11	18354649	Missense_Mutation	SNP	C	TCGA-2G-AAGF-01A-31D-A42Y-10	16775539	18354649	116651867	34	1875											
NAV2	89797	bcgsc.ca	37	chr11	20005718	20005718	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatacccgtcgcctgaaccGgctccctgatgggatggctg	12	14	0	2	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	NAV2,colon,carcinoma,+1,1	NAV2	NM_001244963	exon12	c.G2762T	p.R921L	TGAACCGGCTCCC		59	5	0.08	58	1	0.0172413793		255	1	1	0	0				T	20005718	G	T	20005718	3	4	28	1	0	0	0	0	1	0	0	0	10231	1116	39	1	2814	1	NAV2	11	20005718	Missense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	1651069	20005718	115000798	35	1876											
SLC1A2	6506	broad.mit.edu	37	chr11	35308373	35308373	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctataaagatggcggctaccGcttcataaagggctgtacca	10	10	1	1	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	SLC1A2	NM_004171	exon8	c.C1217A	p.A406E	GCTACCGCTTCAT		124	3	0.02	141	0	0		54		2	0	0				T	35308373	G	T	35308373	3	4	28	1	0	0	0	0	1	0	0	0	14486	1087	38	1	523	1	SLC1A2	11	35308373	Missense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	15302655	35308373	99698143	36	1877											
SLC22A12	116085	mdanderson.org	37	chr11	64367948	64367948	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttccccactgtgctcagGtgaggctgggcctgggctcc	13	15	2	1	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001276326	exon8	c.1292+1G>T	.	GCTCAGGTGAGGC		40	3	0.08	32	0	0				0	0					T	64367948	G	T	64367948	5	4	28	1	0	0	0	0	0	0	1	0	14497	1275	44	3	1425	3	SLC22A12	11	64367948	Splice_Site	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	29059575	64367948	70638568	37	1878											
DDX10	1662	mdanderson.org	37	chr11	108594024	108594024	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaaactggcaaaagcaaaAggatctcaagccccatctct	8	11	2	1	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_004398	exon13	c.A1800G	p.K600K	AGCAAAAGGATCT		44	3	0.07	52	0	0				84	0	0				G	108594024	A	G	108594024	2	3	28	1	0	0	0	0	0	0	0	1	4365	69	3	4		4	DDX10	11	108594024	Silent	SNP	A	TCGA-2G-AAGF-01A-31D-A42Y-10	44226076	108594024	26412492	38	1879											
FGD4	121512	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr12	32734925	32734925	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	attatagtgatttgaagaaaGagtctgctgtgaacctaaat	9	4	1	5	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_139241	exon4	c.G124T	p.E42X	AAGAAAGAGTCTG		260	11	0.04	108	0	0				46	0	0				T	32734925	G	T	32734925	4	4	28	1	0	0	0	0	0	1	0	0	5867	943	33	3	130	3	FGD4	12	32734925	Nonsense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10		32734925	101116970	39	1880											
TMEM117	84216	mdanderson.org	37	chr12	44537344	44537344	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	acagagcatatatcattacaGactatatgggcatccgaaat	7	8	1	2	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_032256	exon4	c.G427T	p.D143Y	ATTACAGACTATA		43	3	0.07	42	0	0				4	0	0				T	44537344	G	T	44537344	3	4	28	1	0	0	0	0	1	0	0	0	16090	942	33	3	437	3	TMEM117	12	44537344	Missense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	11802419	44537344	89314551	40	1881											
NCOR2	9612	hgsc.bcm.edu;mdanderson.org	37	chr12	124887102	124887102	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgttgttgCtgctgctgtcagaccccggg	14	12	1	1	rs7488825	bycluster;alternate_allele	TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_006312	exon16	c.G1488A	p.Q496Q	TTGTTGCTGCTGC		66	7	0.11	43	0	0				21	2	0.1				T	124887102	C	T	124887102	2	4	28	1	0	0	0	0	0	0	0	1	10282	796	28	2		2	NCOR2	12	124887102	Silent	SNP	C	TCGA-2G-AAGF-01A-31D-A42Y-10	80349758	124887102	8964793	41	1882											
EBPL	84650	broad.mit.edu	37	chr13	50235138	50235138	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcactgaactggtttctttcTgatgcattttcttgagttct	7	8	5	3	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	EBPL,NS,carcinoma,0,2	EBPL	NM_032565	exon4	c.A587C	p.Q196P	TCTTTCTGATGCA		120	4	0.03	104	0	0		44	2	509	0	0				G	50235138	T	G	50235138	3	3	28	1	0	0	0	0	1	0	0	0	4913	1580	55	4	37	4	EBPL	13	50235138	Missense_Mutation	SNP	T	TCGA-2G-AAGF-01A-31D-A42Y-10		50235138	64934740	42	1883											
IRS2	8660	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr13	110435838	110435838	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggctgcgtggggccggcccCgaaggcgctggccgcctggc	20	15	0	0	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	IRS2	NM_003749	exon1	c.G2563A	p.G855R	CGGCCCCGAAGGC		25	12	0.48	24	0	0		44		0	0					T	110435838	C	T	110435838	3	4	28	1	0	0	0	0	1	0	0	0	7884	652	23	1	1461	1	IRS2	13	110435838	Missense_Mutation	SNP	C	TCGA-2G-AAGF-01A-31D-A42Y-10	60200700	110435838	4734040	43	1884											
MCF2L	23263	mdanderson.org	37	chr13	113742028	113742028	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctctgctcgcagatggctgCcgttggcattacggagaacg	13	11	1	2	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001112732	exon23	c.C2603T	p.A868V	TGGCTGCCGTTGG		32	3	0.09	78	0	0				4	0	0				T	113742028	C	T	113742028	3	4	28	1	0	0	0	0	1	0	0	0	9428	739	26	2	2959	2	MCF2L	13	113742028	Missense_Mutation	SNP	C	TCGA-2G-AAGF-01A-31D-A42Y-10	3306190	113742028	1427850	44	1885											
PRKCH	5583	mdanderson.org	37	chr14	62016436	62016436	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atgtcagtaattttgaccctGacttcataaaggaagagcca	8	8	2	3	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	PRKCH,NS,carcinoma,0,1	PRKCH	NM_006255	exon14	c.G1939T	p.D647Y	GACCCTGACTTCA		48	3	0.06	44	0	0		0	1	25	0	0				T	62016436	G	T	62016436	3	4	28	1	0	0	0	0	1	0	0	0	12564	1290	45	3	1993	3	PRKCH	14	62016436	Missense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10		62016436	45333104	45	1886											
VPS18	57617	mdanderson.org	37	chr15	41191492	41191492	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cacggagagcagcacaggccCcatcctggtcgggactgccc	13	16	0	1	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_020857	exon4	c.C476A	p.P159H	CAGGCCCCATCCT		30	3	0.1	38	0	0				19	0	0				A	41191492	C	A	41191492	3	1	28	1	0	0	0	0	1	0	0	0	17253	623	22	3	490	3	VPS18	15	41191492	Missense_Mutation	SNP	C	TCGA-2G-AAGF-01A-31D-A42Y-10		41191492	61339900	46	1887											
EPB42	2038	mdanderson.org	37	chr15	43500507	43500507	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggcaggccgcgtcatccaGcactctgtggaagtctggaa	13	11	3	0	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_000119	exon8	c.C1086T	p.C362C	CATCCAGCACTCT		41	3	0.07	74	0	0				0	0					A	43500507	G	A	43500507	2	1	28	1	0	0	0	0	0	0	0	1	5186	963	34	2		2	EPB42	15	43500507	Silent	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	2309015	43500507	59030885	47	1888											
PLEKHO2	80301	mdanderson.org	37	chr15	65157590	65157590	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaactgaaagcctccatgGgtgagatgcaggcttctggg	14	8	1	3	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_025201	exon6	c.G976T	p.G326C	TCCATGGGTGAGA		47	3	0.06	58	0	0				22	0	0				T	65157590	G	T	65157590	3	4	28	1	0	0	0	0	1	0	0	0	12132	1232	43	3	998	3	PLEKHO2	15	65157590	Missense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	21657083	65157590	37373802	48	1889											
CLCN7	1186	broad.mit.edu;mdanderson.org	37	chr16	1505139	1505139	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cgatggggcaggttacctccGagtcaaaccttccgaagttg	12	11	1	0	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	CLCN7	NM_001287	exon12	c.C1094A	p.S365X	ACCTCCGAGTCAA		89	5	0.06	89	0	0		53		33	0	0				T	1505139	G	T	1505139	4	4	28	1	0	0	0	0	0	1	0	0	3491	1059	37	1	1379	1	CLCN7	16	1505139	Nonsense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10		1505139	88849614	49	1890											
VAT1L	57687	mdanderson.org	37	chr16	77822666	77822666	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagccggcggagggcggcggCggcgacggctcgcaccgcct	20	15	0	0	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_020927	exon1	c.C87T	p.G29G	CGGCGGCGGCGAC		21	2	0.1	31	0	0				0	0					T	77822666	C	T	77822666	2	4	28	1	0	0	0	0	0	0	0	1	17189	755	27	1		1	VAT1L	16	77822666	Silent	SNP	C	TCGA-2G-AAGF-01A-31D-A42Y-10	76317527	77822666	12532087	50	1891											
SLC7A5	8140	mdanderson.org	37	chr16	87870225	87870225	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tgacggagaagatgtccttgGagaaggcgtagagcagcgtc	16	7	0	5	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_003486	exon8	c.C1169A	p.S390Y	TCCTTGGAGAAGG		15	3	0.2	26	0	0				71	0	0				T	87870225	G	T	87870225	3	4	28	1	0	0	0	0	1	0	0	0	14754	1174	41	3	366	3	SLC7A5	16	87870225	Missense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	10047559	87870225	2484528	51	1892											
DERL2	51009	broad.mit.edu	37	chr17	5383846	5383846	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cttcggctccacacatagacGagcattattgtaaaggcctg	9	11	0	1	rs143440894	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	DERL2	NM_016041	exon5	c.C384A	p.L128L	ATAGACGAGCATT		436	6	0.01	373	0	0		15		230	0	0				T	5383846	G	T	5383846	2	4	28	1	0	0	0	0	0	0	0	1	4475	1045	37	1		1	DERL2	17	5383846	Silent	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10		5383846	75811364	52	1893											
PLCD3	113026	mdanderson.org	37	chr17	43195379	43195379	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accgtgaaggcatggtcgcgCacggcttggaccacgtcccg	14	14	0	1	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	.	.	.	.	GTCGCGCACGGCT		45	3	0.07	48	0	0				46	0	0				A	43195379	C	A	43195379	2	1	28	1	0	0	0	0	0	0	0	1	12079	697	25	2		2	PLCD3	17	43195379	Silent	SNP	C	TCGA-2G-AAGF-01A-31D-A42Y-10	37811533	43195379	37999831	53	1894											
LAMA1	284217	mdanderson.org	37	chr18	6950970	6950970	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcttagctcaaccgagagCctggggaaaacaagtgctca	11	10	2	1	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_005559	exon58	c.G8208T	p.K2736N	CGAGAGCCTGGGG		20	2	0.1	47	0	0				64	0	0				A	6950970	C	A	6950970	3	1	28	1	0	0	0	0	1	0	0	0	8643	753	26	2	1043	2	LAMA1	18	6950970	Missense_Mutation	SNP	C	TCGA-2G-AAGF-01A-31D-A42Y-10		6950970	71126278	54	1895											
CIDEA	1149	mdanderson.org	37	chr18	12254390	12254390	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggatccgcgccatggaggCcgcccgggactatgcaggag	18	12	0	0	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001279	exon1	c.C8A	p.A3D	TGGAGGCCGCCCG		19	3	0.16	26	0	0				1	0	0				A	12254390	C	A	12254390	3	1	28	1	0	0	0	0	1	0	0	0	3447	739	26	2	10	2	CIDEA	18	12254390	Missense_Mutation	SNP	C	TCGA-2G-AAGF-01A-31D-A42Y-10	5303420	12254390	65822858	55	1896											
ATP4A	495	mdanderson.org	37	chr19	36050969	36050969	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttcaccaccaggccctgcAcggtgcctgcaggggggcca	14	15	1	0	rs2733743	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_000704	exon7	c.T794A	p.V265E	CCCTGCACGGTGC		47	2	0.04	51	0	0				0	0					T	36050969	A	T	36050969	3	4	28	1	0	0	0	0	1	0	0	0	1144	159	6	5	2377	5	ATP4A	19	36050969	Missense_Mutation	SNP	A	TCGA-2G-AAGF-01A-31D-A42Y-10		36050969	23078014	56	1897											
WDR62	284403	mdanderson.org	37	chr19	36577593	36577593	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctctcctctcacagggctGaccttgctggcctcagccag	9	16	3	1	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001083961	exon13	c.G1647T	p.L549L	AGGGCTGACCTTG		49	3	0.06	48	0	0				12	0	0				T	36577593	G	T	36577593	2	4	28	1	0	0	0	0	0	0	0	1	17372	1277	45	3		3	WDR62	19	36577593	Silent	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	526624	36577593	22551390	57	1898											
FCGBP	8857	broad.mit.edu	37	chr19	40392050	40392050	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attgctggatgggcacgcagGcttggccgttgtagaggaag	17	7	0	1	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	FCGBP	NM_003890	exon17	c.C8336T	p.A2779V	ACGCAGGCTTGGC		265	4	0.02	284	0	0		416		21	0	0				A	40392050	G	A	40392050	3	1	28	1	0	0	0	0	1	0	0	0	5810	1203	42	2	7961	2	FCGBP	19	40392050	Missense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	3814457	40392050	18736933	58	1899											
ETHE1	23474	mdanderson.org	37	chr19	44011048	44011048	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcgcatgttggctggaacaGcaaagtctgaaaggaagaaa	13	6	1	2	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	ETHE1,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	ETHE1	NM_014297	exon7	c.C719T	p.A240V	GGAACAGCAAAGT		33	3	0.09	30	0	0		0	1	282	0	0				A	44011048	G	A	44011048	3	1	28	1	0	0	0	0	1	0	0	0	5300	971	34	2	49	2	ETHE1	19	44011048	Missense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	3618998	44011048	15117935	59	1900											
RTN2	6253	broad.mit.edu;mdanderson.org	37	chr19	45992653	45992653	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacggcctgcagcactttgcGgtaaaccctgagagagatgg	13	11	0	2	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	RTN2,caecum,carcinoma,+1,2	RTN2	NM_005619	exon6	c.C1192T	p.R398C	CTTTGCGGTAAAC		51	3	0.06	46	1	0.0217391304		45	2	56	0	0				A	45992653	G	A	45992653	3	1	28	1	0	0	0	0	1	0	0	0	13777	1116	39	1	469	1	RTN2	19	45992653	Missense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	1981605	45992653	13136330	60	1901											
RRBP1	6238	bcgsc.ca	37	chr20	17639867	17639867	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggccccctcggccttcttgCcctggttctgggccccctcg	12	19	2	0	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	RRBP1	.	.	.	.	TTCTTGCCCTGGT		192	12	0.06	167	2	0.0119760479		157		775	46	0.06				T	17639867	C	T	17639867	3	4	28	1	0	0	0	0	1	0	0	0	13729	754	26	2		2	RRBP1	20	17639867	Missense_Mutation	SNP	C	TCGA-2G-AAGF-01A-31D-A42Y-10		17639867	45385653	61	1902											
SCAND1	51282	mdanderson.org	37	chr20	34542028	34542028	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctcggggcgtagggatgGcttcagggaccgcggcgttg	19	10	1	0	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_033630	exon2	c.C368T	p.A123V	GGGATGGCTTCAG		44	3	0.07	38	0	0				290	0	0				A	34542028	G	A	34542028	3	1	28	1	0	0	0	0	1	0	0	0	13927	1203	42	2	364	2	SCAND1	20	34542028	Missense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	16902161	34542028	28483492	62	1903											
MYT1	4661	broad.mit.edu	37	chr20	62848481	62848482	+	Frame_Shift_Ins	INS	-	-	C													gagctaccggcccaacgtggINScccccgccacacccagggcc					novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	MYT1	NM_004535	exon11	c.1693_1694insC	p.A565fs	AACGTGGCCCCCG		104	6	0.06	75	0	0		152		0	0					C	62848482	-	C	62848481	7	5	28	1	0	1	1	0	0	0	0	0	10153	1203	42	0	1727	0	MYT1	20	62848481	Frame_Shift_Ins	INS	-	TCGA-2G-AAGF-01A-31D-A42Y-10	28306453	62848481	177039	63	1904											
TRAPPC10	7109	broad.mit.edu;mdanderson.org	37	chr21	45507655	45507655	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtctgcctgttgcgcctgCgtaccacgtgatcgaatttg	11	12	1	1	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	TRAPPC10	NM_003274	exon17	c.C2615T	p.A872V	CGCCTGCGTACCA		77	4	0.05	51	0	0		109		22	0	0				T	45507655	C	T	45507655	3	4	28	1	0	0	0	0	1	0	0	0	16517	768	27	1	2681	1	TRAPPC10	21	45507655	Missense_Mutation	SNP	C	TCGA-2G-AAGF-01A-31D-A42Y-10		45507655	2622240	64	1905											
ADORA2A	135	bcgsc.ca	37	chr22	24837218	24837218	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcagtgacggagagcagGtcagcctccgtctcaacggc	14	12	2	2	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	ADORA2A	NM_000675	exon3	c.G1000T	p.V334F	GAGCAGGTCAGCC		44	4	0.09	43	0	0		44		66	0	0				T	24837218	G	T	24837218	3	4	28	1	0	0	0	0	1	0	0	0	326	1261	44	3	1006	3	ADORA2A	22	24837218	Missense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10		24837218	26467348	65	1906											
MYH9	4627	mdanderson.org	37	chr22	36745272	36745272	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatacttatcggcagcttGctgtgccatggtgacttata	11	8	0	2	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_002473	exon2	c.C10A	p.Q4K	CAGCTTGCTGTGC		37	3	0.08	50	0	0				34	0	0				T	36745272	G	T	36745272	3	4	28	1	0	0	0	0	1	0	0	0	10089	1328	46	2	6032	2	MYH9	22	36745272	Missense_Mutation	SNP	G	TCGA-2G-AAGF-01A-31D-A42Y-10	11908054	36745272	14559294	66	1907											
PIM3	415116	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr22	50355011	50355011	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcgggtgaccgagtggggcAgcctggtaagttggggcacg	20	8	0	1	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001001852	exon3	c.A241G	p.S81G	TGGGGCAGCCTGG		116	20	0.17	115	0	0				12	5	0.42				G	50355011	A	G	50355011	3	3	28	1	0	0	0	0	1	0	0	0	11976	188	7	4	251	4	PIM3	22	50355011	Missense_Mutation	SNP	A	TCGA-2G-AAGF-01A-31D-A42Y-10	13609739	50355011	949555	67	1908											
IRAK1	3654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	153278098	153278098	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ataatctgcggtggctctgaCgacgatgatgcagagctgcc	13	10	2	3	novel		TCGA-2G-AAGF-01A-31D-A42Y-10	TCGA-2G-AAGF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e2e4da33-fde9-4047-a136-495d4b15ab5e	f883c62a-90a5-4801-a223-3315d37bc801	.	.	NM_001569	exon13	c.G1962C	p.S654S	CTCTGACGACGAT		89	23	0.26	74	0	0				122	27	0.22				G	153278098	C	G	153278098	2	3	28	1	0	0	0	0	0	0	0	1	7864	523	19	5		5	IRAK1	23	153278098	Silent	SNP	C	TCGA-2G-AAGF-01A-31D-A42Y-10		153278098	1992462	68	1909											
YRDC	79693	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	38270037	38270037	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caaccacagttgagccaaggCgacactcggggctctggcca	12	14	1	1	rs138070077		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	YRDC,NS,carcinoma,0,1	YRDC	NM_024640	exon4	c.G704A	p.R235H	CCAAGGCGACACT		156	13	0.08	153	0	0	0	0	1	75	4	0.05				T	38270037	C	T	38270037	3	4	29	1	0	0	0	0	1	0	0	0	17553	768	27	1	143	1	YRDC	1	38270037	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10		38270037	210980584	1	1910											
ACOT11	26027	mdanderson.org	37	chr1	55070882	55070882	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtgggacaagcactaccGgtgaggggccagggtgaggg	20	7	0	3	rs143707794	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_015547	exon13	c.G1370T	p.R457L	ACTACCGGTGAGG		49	3	0.06	45	0	0				37	0	0				T	55070882	G	T	55070882	3	4	29	1	0	0	0	0	1	0	0	0	149	1130	39	1	1420	1	ACOT11	1	55070882	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	16800845	55070882	194179739	2	1911											
LRRC8B	23507	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	90048812	90048812	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttcagctgacatagattcCggcaaacagtcattgcccta	8	11	2	2	rs116502828	bycluster;byfrequency;by1000genomes	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_015350	exon5	c.C603T	p.S201S	AGATTCCGGCAAA		70	5	0.07	79	0	0	0.003			2	0	0				T	90048812	C	T	90048812	2	4	29	1	0	0	0	0	0	0	0	1	9066	639	23	1		1	LRRC8B	1	90048812	Silent	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	34977930	90048812	159201809	3	1912											
GFI1	2672	mdanderson.org	37	chr1	92948551	92948551	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggtcagctgcgattcgggGgacaaacggtcccggggctc	16	12	1	0	rs143913803	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001127215	exon3	c.C168A	p.S56S	TTCGGGGGACAAA		17	2	0.12	26	0	0				2	0	0				T	92948551	G	T	92948551	2	4	29	1	0	0	0	0	0	0	0	1	6380	1219	43	3		3	GFI1	1	92948551	Silent	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	2899739	92948551	156302070	4	1913											
NBPF14	25832	broad.mit.edu	37	chr1	148009435	148009435	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gagtcagtcagttcaagacaAcctgaaggagttgaatagca	11	7	3	3	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	NBPF14	NM_015383	exon16	c.T1872A	p.G624G	AAGACAACCTGAA		355	7	0.02	516	0	0		107		51	1	0.02				T	148009435	A	T	148009435	2	4	29	1	0	0	0	0	0	0	0	1	10241	30	2	5		5	NBPF14	1	148009435	Silent	SNP	A	TCGA-2G-AAGG-01A-11D-A42Y-10	55060884	148009435	101241186	5	1914											
KCNJ10	3766	mdanderson.org	37	chr1	160011301	160011301	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtacagtgctgtcacggaggCcactaggagaggccactttc	13	11	1	1	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_002241	exon2	c.G1022A	p.G341D	CGGAGGCCACTAG		118	5	0.04	105	0	0				0	0					T	160011301	C	T	160011301	3	4	29	1	0	0	0	0	1	0	0	0	8087	739	26	2	121	2	KCNJ10	1	160011301	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	12001866	160011301	89239320	6	1915											
CR1	1378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	207787775	207787775	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attaaaaggcaggtctgctaGtcattgtgtcttggctggaa	12	6	3	0	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_000651	exon40	c.G6602A	p.S2201N	CTGCTAGTCATTG		100	31	0.31	101	0	0				2	0	0				A	207787775	G	A	207787775	3	1	29	1	0	0	0	0	1	0	0	0	3863	1029	36	3	6760	3	CR1	1	207787775	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	47776474	207787775	41462846	7	1916											
CDC42BPA	8476	broad.mit.edu	37	chr1	227441766	227441766	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaaatcttaatctcttaccTccccaaaagctcctcgacca	2	16	3	0	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	CDC42BPA	NM_003607	exon2	c.A269G	p.E90G	CTTACCTCCCCAA		166	5	0.03	163	0	0		528		2	0	0				C	227441766	T	C	227441766	5	2	29	1	0	0	0	0	0	0	1	0	3094	1565	54	4	5030	4	CDC42BPA	1	227441766	Splice_Site	SNP	T	TCGA-2G-AAGG-01A-11D-A42Y-10	19653991	227441766	21808855	8	1917											
TRIM67	440730	mdanderson.org	37	chr1	231298836	231298836	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgcggtgcagaccccggacGgtgagcagcacctgccccag	14	16	0	2	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	TRIM67_ENST00000366653,colon,carcinoma,0,2	TRIM67_ENST00000366653	NM_001004342	exon1	c.G121A	p.G41S	CCGGACGGTGAGC		46	3	0.07	36	0	0		0	2	0	0					A	231298836	G	A	231298836	3	1	29	1	0	0	0	0	1	0	0	0	16600	1116	39	1	123	1	TRIM67	1	231298836	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	3857070	231298836	17951785	9	1918											
CHRM3	1131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	240071655	240071655	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcaacagcaaagcatgaaaCgctccaacaggaggaagtat	9	9	1	1	rs200967479		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	CHRM3,colon,carcinoma,0,1	CHRM3	NM_000740	exon5	c.C904T	p.R302C	ATGAAACGCTCCA		134	27	0.2	136	0	0		0	1	17	2	0.12				T	240071655	C	T	240071655	3	4	29	1	0	0	0	0	1	0	0	0	3400	536	19	1	906	1	CHRM3	1	240071655	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	8772819	240071655	9178966	10	1919											
SLC20A1	6574	mdanderson.org	37	chr2	113414819	113414819	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaagagaaaaattgaacGtaagtaataactaaacagca	8	4	0	3	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_005415	exon6	c.778+1G>T	.	TTGAACGTAAGTA		79	4	0.05	80	0	0				5	0	0				T	113414819	G	T	113414819	5	4	29	1	0	0	0	0	0	0	1	0	14492	1159	40	1	797	1	SLC20A1	2	113414819	Splice_Site	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10		113414819	129784554	11	1920											
POTEF	728378	broad.mit.edu	37	chr2	130877755	130877755	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccaccttgctcttgctgcTccccctgcagcaggggaagc	11	17	1	0	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	POTEF	NM_001099771	exon3	c.A334G	p.S112G	TGCTGCTCCCCCT		179	5	0.03	167	0	0		140		1	0	0				C	130877755	T	C	130877755	3	2	29	1	0	0	0	0	1	0	0	0	12311	1551	54	4	2953	4	POTEF	2	130877755	Missense_Mutation	SNP	T	TCGA-2G-AAGG-01A-11D-A42Y-10	17462936	130877755	112321618	12	1921											
C2orf54	79919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	241835040	241835040	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggcagtgaaggtatcctcGgtggtccaccgctccaggcc	14	13	0	1	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001085437	exon1	c.C375T	p.T125T	ATCCTCGGTGGTC		108	10	0.09	114	0	0				15	6	0.4				A	241835040	G	A	241835040	2	1	29	1	0	0	0	0	0	0	0	1	2189	1103	39	1		1	C2orf54	2	241835040	Silent	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	110957285	241835040	1364333	13	1922											
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	4687295	4687295	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgaggctgtttcatgctgaGcaggagaagtttctcacctg	13	8	2	3	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001099952	exon10	c.G738A	p.E246E	TGCTGAGCAGGAG		101	24	0.24	98	0	0				2	0	0				A	4687295	G	A	4687295	2	1	29	1	0	0	0	0	0	0	0	1	7963	962	34	2		2	ITPR1	3	4687295	Silent	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10		4687295	193335135	14	1923											
NISCH	11188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	52492740	52492740	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaaagataattgggaaaaaCtcaagaagcttggtggagaa	11	3	1	3	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001276293	exon3	c.C240G	p.N80K	GAAAAACTCAAGA		110	23	0.21	97	0	0				45	21	0.47				G	52492740	C	G	52492740	3	3	29	1	0	0	0	0	1	0	0	0	10478	564	20	5	250	5	NISCH	3	52492740	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	47805445	52492740	145529690	15	1924											
PDZRN3	23024	mdanderson.org	37	chr3	73433414	73433414	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagatctccagggtgagcGgggtgctgcggcagctctcg	19	10	2	2	rs376105538	alternate_allele	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_015009	exon10	c.C2303A	p.P768Q	GTGAGCGGGGTGC		38	4	0.11	40	0	0				34	0	0				T	73433414	G	T	73433414	3	4	29	1	0	0	0	0	1	0	0	0	11755	1116	39	1	901	1	PDZRN3	3	73433414	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	20940674	73433414	124589016	16	1925											
NPHP3	27031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	132408024	132408024	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agtttttctcatactgcttcAatgaatcgaagtattctgtt	6	7	3	1	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_153240	exon20	c.T2777G	p.L926W	TGCTTCAATGAAT		113	25	0.22	134	0	0				22	7	0.32				C	132408024	A	C	132408024	3	2	29	1	0	0	0	0	1	0	0	0	10626	131	5	4	1247	4	NPHP3	3	132408024	Missense_Mutation	SNP	A	TCGA-2G-AAGG-01A-11D-A42Y-10	58974610	132408024	65614406	17	1926											
TFRC	7037	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	195789794	195789794	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggcaaagataatgcttctGctgggctgaaacccatctga	10	10	2	3	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	TFRC	NM_001128148	exon12	c.C1335A	p.S445R	GCTTCTGCTGGGC		65	5	0.08	73	0	0		54		34	0	0				T	195789794	G	T	195789794	3	4	29	1	0	0	0	0	1	0	0	0	15871	1310	46	2	979	2	TFRC	3	195789794	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	63381770	195789794	2232636	18	1927											
SHROOM3	57619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	77631363	77631363	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcctctaacttcgtcagCccagaacacctcacctctgg	8	16	4	1	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_020859	exon3	c.C378A	p.S126R	CGTCAGCCCAGAA		199	69	0.35	245	0	0				10	4	0.4				A	77631363	C	A	77631363	3	1	29	1	0	0	0	0	1	0	0	0	14349	738	26	2	388	2	SHROOM3	4	77631363	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10		77631363	113522913	19	1928											
ARHGAP10	79658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	148993187	148993187	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tggctagaagggactctgaaCggcaagagggggctgattcc	16	8	1	4	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_024605	exon23	c.C2316G	p.N772K	TCTGAACGGCAAG		59	12	0.2	53	0	0				22	0	0				G	148993187	C	G	148993187	3	3	29	1	0	0	0	0	1	0	0	0	859	535	19	5	2406	5	ARHGAP10	4	148993187	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	71361824	148993187	42161089	20	1929											
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	1093664	1093664	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaccttggcctcccgccgcCggctctcctcgtcctcctcg	9	21	1	0	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_006598	exon3	c.G326T	p.R109L	CGCCGCCGGCTCT		50	16	0.32	36	0	0				26	12	0.46				A	1093664	C	A	1093664	3	1	29	1	0	0	0	0	1	0	0	0	14442	652	23	1	3013	1	SLC12A7	5	1093664	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10		1093664	179821596	21	1930											
ADCY2	108	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	7707008	7707008	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accacatggaagctggagggGtccctgggtaaggccaagca	15	10	0	0	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	ADCY2,NS,carcinoma,-2,1	ADCY2	NM_020546	exon8	c.G1261T	p.V421F	GGAGGGGTCCCTG		64	5	0.08	52	0	0		337	1	1	1	1				T	7707008	G	T	7707008	3	4	29	1	0	0	0	0	1	0	0	0	293	1261	44	3	1291	3	ADCY2	5	7707008	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	6613344	7707008	173208252	22	1931											
PRDM9	56979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	23527778	23527778	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acacaggggagaagccctacGtctgcagggagtgtgggcgg	18	9	1	1	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_020227	exon11	c.G2581A	p.V861I	CCCTACGTCTGCA		191	39	0.2	209	0	0				0	0					A	23527778	G	A	23527778	3	1	29	1	0	0	0	0	1	0	0	0	12514	1145	40	1	2619	1	PRDM9	5	23527778	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	15820770	23527778	157387482	23	1932											
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu	37	chr5	38448404	38448404	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tttttctgttctgtcccagcGatcatagaagccattgagat	8	9	3	2	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001205301	exon19	c.G2490T	p.T830T	CCCAGCGATCATA		70	4	0.06	69	0	0				24	0	0				T	38448404	G	T	38448404	2	4	29	1	0	0	0	0	0	0	0	1	4992	1072	37	1		1	EGFLAM	5	38448404	Silent	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	14920626	38448404	142466856	24	1933											
VARS2	57176	broad.mit.edu	37	chr6	30882614	30882614	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccctttccaaacactcctgAtgcctcatttgcctctcgcc	4	19	2	1	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	VARS2	NM_001167734	exon2	c.A91G	p.M31V	CTCCTGATGCCTC		158	4	0.03	131	0	0		60		32	4	0.13	rescued with RNA-seq			G	30882614	A	G	30882614	3	3	29	1	0	0	0	0	1	0	0	0	17183	333	12	4	97	4	VARS2	6	30882614	Missense_Mutation	SNP	A	TCGA-2G-AAGG-01A-11D-A42Y-10		30882614	140232453	25	1934											
MSH5	4439	mdanderson.org	37	chr6	31726391	31726391	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaacatagatcctgaaattGatgagagtgagtgttgggtg	13	5	0	5	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_025259	exon14	c.G1261T	p.D421Y	GAAATTGATGAGA		81	4	0.05	87	0	0				77	0	0				T	31726391	G	T	31726391	3	4	29	1	0	0	0	0	1	0	0	0	9921	1290	45	3	1311	3	MSH5	6	31726391	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	843777	31726391	139388676	26	1935											
IPCEF1	26034	mdanderson.org	37	chr6	154544307	154544307	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgagagacaacttactgcTttttcttgcattcagatgct	8	8	2	3	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001130699	exon7	c.A317G	p.K106R	TACTGCTTTTTCT		43	3	0.07	51	0	0				0	0					C	154544307	T	C	154544307	3	2	29	1	0	0	0	0	1	0	0	0	7834	1609	56	4	1027	4	IPCEF1	6	154544307	Missense_Mutation	SNP	T	TCGA-2G-AAGG-01A-11D-A42Y-10	122817916	154544307	16570760	27	1936											
LPA	4018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	160999712	160999712	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	cgaatctcagcatctggattCctgcagtagttcctggtcag	10	11	3	0	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_005577	exon28	c.G4314T	p.R1438S	TGGATTCCTGCAG		97	18	0.19	93	0	0				0	0					A	160999712	C	A	160999712	3	1	29	1	0	0	0	0	1	0	0	0	8947	854	30	3	1860	3	LPA	6	160999712	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	6455405	160999712	10115355	28	1937											
TNS3	64759	mdanderson.org	37	chr7	47474985	47474985	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggtgcgtggagctctggCcagcccacatccatgatctg	14	13	2	1	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_022748	exon8	c.G219A	p.W73X	CTCTGGCCAGCCC		34	3	0.09	35	0	0				19	0	0				T	47474985	C	T	47474985	4	4	29	1	0	0	0	0	0	1	0	0	16403	740	26	2	4214	2	TNS3	7	47474985	Nonsense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10		47474985	111663678	29	1938											
POM121L12	285877	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	53103898	53103898	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgcacccgggagactctGctgggggcgctcagccagtg	15	15	2	1	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_182595	exon1	c.G534T	p.L178L	GACTCTGCTGGGG		34	9	0.26	35	0	0				0	0					T	53103898	G	T	53103898	2	4	29	1	0	0	0	0	0	0	0	1	12288	1306	46	2		2	POM121L12	7	53103898	Silent	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	5628913	53103898	106034765	30	1939											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	151845608	151845608	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcatccactagtggcaccCgtcttgtgacagaagacaca	10	12	1	3	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_170606	exon52	c.G13404A	p.T4468T	GGCACCCGTCTTG		108	6	0.06	86	0	0				24	0	0				T	151845608	C	T	151845608	2	4	29	1	0	0	0	0	0	0	0	1	9669	639	23	1		1	MLL3	7	151845608	Silent	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	98741710	151845608	7293055	31	1940											
MFHAS1	9258	mdanderson.org	37	chr8	8748682	8748682	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtaagtggcgcgggtccctGcagctaacaggcaacacggg	15	12	0	0	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_004225	exon1	c.C1887A	p.C629X	GTCCCTGCAGCTA		25	3	0.12	28	0	0				15	0	0				T	8748682	G	T	8748682	4	4	29	1	0	0	0	0	0	1	0	0	9570	1311	46	2	1283	2	MFHAS1	8	8748682	Nonsense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10		8748682	137615340	32	1941											
RP1L1	94137	hgsc.bcm.edu	37	chr8	10465934	10465934	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcccattctgcctctggggTctctacatcttctgactctg	7	15	6	1	rs202056828		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	RP1L1,NS,carcinoma,+1,1	RP1L1	NM_178857	exon4	c.A5674G	p.T1892A	CTGGGGTCTCTAC		56	10	0.18	64	2	0.03125		1	1	0	0					C	10465934	T	C	10465934	3	2	29	1	0	0	0	0	1	0	0	0	13584	1667	58	4	1532	4	RP1L1	8	10465934	Missense_Mutation	SNP	T	TCGA-2G-AAGG-01A-11D-A42Y-10	1717252	10465934	135898088	33	1942											
RP1L1	94137	bcgsc.ca	37	chr8	10466034	10466034	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttcagcctcctgggcatcCccttctgcctctggggcctc	9	19	3	0	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	RP1L1	NM_178857	exon4	c.G5574A	p.G1858G	GGCATCCCCTTCT		27	5	0.19	79	0	0		453		0	0					T	10466034	C	T	10466034	2	4	29	1	0	0	0	0	0	0	0	1	13584	610	22	3		3	RP1L1	8	10466034	Silent	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	100	10466034	135897988	34	1943											
ADAM28	10863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	24151704	24151704	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcagtctcctcctctctgtTgcaggtacatatttagctct	7	12	4	0	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_014265	exon1	c.T42G	p.V14V	CTCTGTTGCAGGT		82	15	0.18	87	0	0				0	0					G	24151704	T	G	24151704	2	3	29	1	0	0	0	0	0	0	0	1	245	1799	63	4		4	ADAM28	8	24151704	Silent	SNP	T	TCGA-2G-AAGG-01A-11D-A42Y-10	13685670	24151704	122212318	35	1944											
PRKDC	5591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	48749779	48749779	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagaccacattacctgaaaTtcgcattctgacagaggatg	9	9	1	4	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	.	.	.	.	CTGAAATTCGCAT		46	10	0.22	54	0	0				55	8	0.15				A	48749779	T	A	48749779	3	1	29	1	0	0	0	0	1	0	0	0	12572	1490	52	5	4751	5	PRKDC	8	48749779	Missense_Mutation	SNP	T	TCGA-2G-AAGG-01A-11D-A42Y-10	24598075	48749779	97614243	36	1945											
ZC3H3	23144	broad.mit.edu	37	chr8	144522222	144522222	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgcctacctgagtccttgGtgaggggggccctaggggcc	17	12	0	2	rs112624965	bycluster	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	ZC3H3	NM_015117	exon11	c.C2804G	p.T935S	TCCTTGGTGAGGG		44	5	0.11	36	0	0		75		83	0	0				C	144522222	G	C	144522222	3	2	29	1	0	0	0	0	1	0	0	0	17627	1261	44	5	50	5	ZC3H3	8	144522222	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	95772443	144522222	1841800	37	1946											
SLC24A2	25769	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	19597247	19597247	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcttcagtcattgtgtcaTaatattttagttttccatat	4	7	4	0	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	SLC24A2	NM_020344	exon4	c.A1109G	p.Y370C	GTGTCATAATATT		134	38	0.28	151	1	0.0066225166		93		0	0					C	19597247	T	C	19597247	3	2	29	1	0	0	0	0	1	0	0	0	14520	1406	49	4	904	4	SLC24A2	9	19597247	Missense_Mutation	SNP	T	TCGA-2G-AAGG-01A-11D-A42Y-10		19597247	121616184	38	1947											
UNC13B	10497	ucsc.edu;bcgsc.ca	37	chr9	35397638	35397638	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcctcttctcagaccatcGggaaggtgctgatgcagtat	10	11	3	2	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	UNC13B	NM_006377	exon29	c.G3436T	p.G1146W	ACCATCGGGAAGG		32	4	0.13	33	0	0		153		32	0	0				T	35397638	G	T	35397638	3	4	29	1	0	0	0	0	1	0	0	0	17044	1116	39	1	3550	1	UNC13B	9	35397638	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	15800391	35397638	105815793	39	1948											
DAB2IP	153090	mdanderson.org	37	chr9	124528809	124528809	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaagaggtgtttgcctcGtggaggcaggagtgcagcag	17	6	0	2	rs371966536	alternate_allele	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	DAB2IP_ENST00000259371,rectum,carcinoma,0,3	DAB2IP_ENST00000259371	NM_032552	exon9	c.G1413T	p.S471S	TGCCTCGTGGAGG		24	2	0.08	27	0	0		0	3	21	0	0				T	124528809	G	T	124528809	2	4	29	1	0	0	0	0	0	0	0	1	4243	1132	40	1		1	DAB2IP	9	124528809	Silent	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	89131171	124528809	16684622	40	1949											
SURF4	6836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	136234314	136234314	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtactgctttgtgacaCggaggaactgcagggccaca	14	10	0	1	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_033161	exon2	c.G56A	p.R19H	GTGACACGGAGGA		41	5	0.12	49	0	0				186	47	0.25				T	136234314	C	T	136234314	3	4	29	1	0	0	0	0	1	0	0	0	15460	536	19	1	773	1	SURF4	9	136234314	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	11705505	136234314	4979117	41	1950											
SNAPC4	6621	mdanderson.org	37	chr9	139272510	139272510	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggctggggtaggggcgGcttctccaggtccagggccc	17	14	1	0	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_003086	exon21	c.C3769A	p.P1257T	GGGGCGGCTTCTC		28	3	0.11	46	0	0				17	0	0				T	139272510	G	T	139272510	3	4	29	1	0	0	0	0	1	0	0	0	14890	1203	42	2	648	2	SNAPC4	9	139272510	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	3038196	139272510	1940921	42	1951											
ANKRD16	54522	mdanderson.org	37	chr10	5920171	5920171	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagccagggtgcccgtgatGtcttcagaatccttcagtcc	11	12	3	3	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001009941	exon7	c.C1008A	p.D336E	CGTGATGTCTTCA		24	3	0.13	52	0	0				26	0	0				T	5920171	G	T	5920171	3	4	29	1	0	0	0	0	1	0	0	0	641	1368	48	3	81	3	ANKRD16	10	5920171	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10		5920171	129614576	43	1952											
POLR3A	11128	mdanderson.org	37	chr10	79742493	79742493	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggggtgacacacaccacaGcctcaccatgaacagccaca	9	15	1	2	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_007055	exon27	c.C3512A	p.A1171D	ACCACAGCCTCAC		58	4	0.07	81	0	0				32	0	0				T	79742493	G	T	79742493	3	4	29	1	0	0	0	0	1	0	0	0	12275	971	34	2	680	2	POLR3A	10	79742493	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	73822322	79742493	55792254	44	1953											
TRIM5	85363	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	5699638	5699638	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctcaaaatctgccaagacGttggttttgtcatactgtat	8	8	3	1	rs182373551	bycluster;by1000genomes	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	TRIM5_ENST00000380034,extremity,malignant_melanoma,-1,2	TRIM5_ENST00000380034	NM_033093	exon4	c.C540T	p.N180N	CAAGACGTTGGTT		131	8	0.06	178	0	0	0	-1	2	11	0	0				A	5699638	G	A	5699638	2	1	29	1	0	0	0	0	0	0	0	1	16585	1136	40	1		1	TRIM5	11	5699638	Silent	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10		5699638	129306878	45	1954											
PATL1	219988	mdanderson.org	37	chr11	59425075	59425075	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acagctctaacaggaggactGccaatgataggtgaagttga	12	7	1	3	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_152716	exon5	c.C549T	p.G183G	AGGACTGCCAATG		33	3	0.09	46	0	0				26	0	0				A	59425075	G	A	59425075	2	1	29	1	0	0	0	0	0	0	0	1	11521	1306	46	2		2	PATL1	11	59425075	Silent	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	53725437	59425075	75581441	46	1955											
EHBP1L1	254102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	65350457	65350457	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agactggggcagcagaaggtGcgatattggggacccaagag	17	7	0	3	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001099409	exon9	c.G2314A	p.A772T	GAAGGTGCGATAT		80	17	0.21	88	0	0				43	8	0.19				A	65350457	G	A	65350457	3	1	29	1	0	0	0	0	1	0	0	0	5002	1319	46	2	2348	2	EHBP1L1	11	65350457	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	5925382	65350457	69656059	47	1956											
CEP57	9702	mdanderson.org	37	chr11	95562419	95562419	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actgaaagacaagttggagtGtgaattggaggcattagtgg	15	3	0	3	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_014679	exon10	c.G1196T	p.C399F	TGGAGTGTGAATT		41	3	0.07	63	0	0				100	0	0				T	95562419	G	T	95562419	3	4	29	1	0	0	0	0	1	0	0	0	3278	1377	48	3	1234	3	CEP57	11	95562419	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	30211962	95562419	39444097	48	1957											
DSCAML1	57453	mdanderson.org	37	chr11	117301733	117301733	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactctcagtggacaccatGctgttccttcctttgtctgg	9	13	2	0	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_020693	exon32	c.C5571A	p.S1857R	CACCATGCTGTTC		34	3	0.09	44	0	0				4	0	0				T	117301733	G	T	117301733	3	4	29	1	0	0	0	0	1	0	0	0	4795	1310	46	2	778	2	DSCAML1	11	117301733	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	21739314	117301733	17704783	49	1958											
FOXM1	2305	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	2983605	2983605	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaggaaggggcagcctccGtcttttgagaatcagtggcc	13	10	2	1	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001243089	exon2	c.C40T	p.R14W	GCCTCCGTCTTTT		100	6	0.06	55	0	0				86	1	0.01				A	2983605	G	A	2983605	3	1	29	1	0	0	0	0	1	0	0	0	6051	1144	40	1	2401	1	FOXM1	12	2983605	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10		2983605	130868290	50	1959											
TNFRSF1A	7132	broad.mit.edu	37	chr12	6438980	6438980	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgtgggcgctgtcctcccActtctgaagggggttgggga	16	10	1	1	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	TNFRSF1A	NM_001065	exon9	c.T1021G	p.W341G	CCTCCCACTTCTG		130	17	0.13	62	10	0.1612903226		39		533	13	0.02				C	6438980	A	C	6438980	3	2	29	1	0	0	0	0	1	0	0	0	16352	159	6	4	354	4	TNFRSF1A	12	6438980	Missense_Mutation	SNP	A	TCGA-2G-AAGG-01A-11D-A42Y-10	3455375	6438980	127412915	51	1960											
KRT81	3887	hgsc.bcm.edu;broad.mit.edu	37	chr12	52681795	52681795	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtaccaggactcggcctcGgcccggctgcgggtgacaat	15	14	0	1	rs200239075	by1000genomes;alternate_allele	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	KRT81,NS,lymphoid_neoplasm,0,1	KRT81	NM_002281	exon5	c.C873A	p.A291A	GGCCTCGGCCCGG		97	4	0.04	73	0	0		0	1	0	0					T	52681795	G	T	52681795	2	4	29	1	0	0	0	0	0	0	0	1	8537	1103	39	1		1	KRT81	12	52681795	Silent	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	46242815	52681795	81170100	52	1961											
DOCK9	23348	broad.mit.edu;mdanderson.org	37	chr13	99449463	99449463	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggtcttctttaatcagaCgttcgtttaccgctaaggct	9	10	3	1	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	DOCK9	.	.	.	.	ATCAGACGTTCGT		116	7	0.06	175	0	0		311		45	0	0				T	99449463	C	T	99449463	3	4	29	1	0	0	0	0	1	0	0	0	4721	536	19	1	114	1	DOCK9	13	99449463	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10		99449463	15720415	53	1962											
GAS6	2621	mdanderson.org	37	chr13	114538575	114538575	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggttcttgcagcgcgcctccCcgcaggcctccgagtctgcg	13	17	2	0	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_000820	exon7	c.G623T	p.G208V	GCCTCCCCGCAGG		47	3	0.06	92	0	0				115	0	0				A	114538575	C	A	114538575	3	1	29	1	0	0	0	0	1	0	0	0	6288	623	22	3	1449	3	GAS6	13	114538575	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	15089112	114538575	631303	54	1963											
SALL2	6297	mdanderson.org	37	chr14	21992828	21992828	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttggcttcaggagccctGgggaggcagtggcctcaagg	16	10	3	0	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	SALL2,NS,carcinoma,0,1	SALL2	NM_005407	exon2	c.C1034A	p.P345Q	AGCCCTGGGGAGG		33	3	0.09	55	0	0		0	1	32	0	0				T	21992828	G	T	21992828	3	4	29	1	0	0	0	0	1	0	0	0	13862	1348	47	3	1993	3	SALL2	14	21992828	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10		21992828	85356712	55	1964											
PLEKHH1	57475	mdanderson.org	37	chr14	68035891	68035891	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggccacatcgggcatgCggctctcagatatgtctccc	11	14	2	1	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_020715	exon8	c.C1300T	p.R434W	GGCATGCGGCTCT		44	3	0.07	43	0	0				7	0	0				T	68035891	C	T	68035891	3	4	29	1	0	0	0	0	1	0	0	0	12123	759	27	1	1326	1	PLEKHH1	14	68035891	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	46043063	68035891	39313649	56	1965											
RPAP1	26015	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr15	41819688	41819688	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcagggcttttcctttttGcttttcctgctgggcattct	8	11	2	0	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_015540	exon12	c.C1544T	p.A515V	CTTTTTGCTTTTC		88	8	0.09	105	0	0				28	2	0.07				A	41819688	G	A	41819688	3	1	29	1	0	0	0	0	1	0	0	0	13592	1319	46	2	2693	2	RPAP1	15	41819688	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10		41819688	60711704	57	1966											
SLTM	79811	broad.mit.edu	37	chr15	59175946	59175946	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttggtccgcttgtgtcccGtccatggcgttcaaccacat	9	15	1	0	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	SLTM,colon,carcinoma,+1,1	SLTM	NM_024755	exon20	c.C2875T	p.R959W	TGTCCCGTCCATG		140	5	0.04	189	0	0		90	1	122	9	0.07	rescued with RNA-seq			A	59175946	G	A	59175946	3	1	29	1	0	0	0	0	1	0	0	0	14807	1144	40	1	237	1	SLTM	15	59175946	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	17356258	59175946	43355446	58	1967											
PIF1	80119	mdanderson.org	37	chr15	65116191	65116191	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgcaatgtgcgcaggaagCggcgcaggcggtctgggggg	22	9	1	0	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_025049	exon2	c.G344A	p.R115H	AGGAAGCGGCGCA		9	2	0.22	18	0	0				0	0					T	65116191	C	T	65116191	3	4	29	1	0	0	0	0	1	0	0	0	11930	768	27	1	1629	1	PIF1	15	65116191	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	5940245	65116191	37415201	59	1968											
DENND4A	10260	mdanderson.org	37	chr15	65962392	65962392	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttatttctatattcagaaaGggtaagaagatattgccaca	7	6	2	3	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001144823	exon26	c.C4596A	p.P1532P	CAGAAAGGGTAAG		50	3	0.06	75	0	0				9	0	0				T	65962392	G	T	65962392	2	4	29	1	0	0	0	0	0	0	0	1	4461	987	35	3		3	DENND4A	15	65962392	Silent	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	846201	65962392	36569000	60	1969											
ZDHHC1	29800	mdanderson.org	37	chr16	67428728	67428728	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaggcgccggcagggccagCggcgtgcacagggctggcgt	20	12	0	0	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_013304	exon11	c.G1299A	p.P433P	GGCCAGCGGCGTG		14	3	0.21	8	0	0				5	0	0				T	67428728	C	T	67428728	2	4	29	1	0	0	0	0	0	0	0	1	17657	755	27	1		1	ZDHHC1	16	67428728	Silent	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10		67428728	22926025	61	1970											
ALOX12	239	mdanderson.org	37	chr17	6900302	6900302	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtggccttcccgtgctaccGctgggtgcagggcgaggaca	17	12	0	0	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_000697	exon2	c.G293A	p.R98H	GCTACCGCTGGGT		37	3	0.08	13	0	0				8	0	0				A	6900302	G	A	6900302	3	1	29	1	0	0	0	0	1	0	0	0	532	1087	38	1	299	1	ALOX12	17	6900302	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10		6900302	74294908	62	1971											
NLGN2	57555	broad.mit.edu;mdanderson.org	37	chr17	7311754	7311754	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgcggcgcgagctcaacaaCgagatcctgggccccgtcgt	14	14	1	1	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	NLGN2	NM_020795	exon1	c.C180G	p.N60K	CAACAACGAGATC		32	3	0.09	26	0	0		61		4	0	0				G	7311754	C	G	7311754	3	3	29	1	0	0	0	0	1	0	0	0	10508	535	19	5	182	5	NLGN2	17	7311754	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	411452	7311754	73883456	63	1972											
SENP3	26168	broad.mit.edu	37	chr17	7466636	7466636	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgaagaggaggaagaagaGgaggaggaggaggatgaaga	21	0	0	6	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	SENP3	NM_015670	exon2	c.G243A	p.E81E	AGAAGAGGAGGAG		91	4	0.04	69	0	0		18		76	0	0				A	7466636	G	A	7466636	2	1	29	1	0	0	0	0	0	0	0	1	14101	991	35	3		3	SENP3	17	7466636	Silent	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	154882	7466636	73728574	64	1973											
KSR1	8844	mdanderson.org	37	chr17	25904572	25904572	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagatgaatgaggccaagGtgaaggagacgctgcggcgc	18	7	0	5	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_014238	exon4	c.G16T	p.V6L	GCCAAGGTGAAGG		33	3	0.09	31	0	0				15	0	0				T	25904572	G	T	25904572	3	4	29	1	0	0	0	0	1	0	0	0	8619	1261	44	3	18	3	KSR1	17	25904572	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	18437936	25904572	55290638	65	1974											
NOS2	4843	mdanderson.org	37	chr17	26089845	26089845	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgggtgtggtaggtgaccaCggccacagtcaggtggatct	16	9	2	1	rs373770638		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_000625	exon22	c.G2779A	p.V927M	TGACCACGGCCAC		36	3	0.08	43	0	0				8	0	0				T	26089845	C	T	26089845	3	4	29	1	0	0	0	0	1	0	0	0	10589	536	19	1	706	1	NOS2	17	26089845	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	185273	26089845	55105365	66	1975											
GRB7	2886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr17	37901196	37901196	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttctgcagtgaagatgagCagagccgcacctgctggctg	13	11	2	4	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001242442	exon9	c.C1039T	p.Q347X	GATGAGCAGAGCC		136	32	0.24	126	0	0				62	7	0.11				T	37901196	C	T	37901196	4	4	29	1	0	0	0	0	0	1	0	0	6799	711	25	2	1000	2	GRB7	17	37901196	Nonsense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	11811351	37901196	43294014	67	1976											
HEXIM2	124790	broad.mit.edu	37	chr17	43246910	43246910	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acttctctgagacttacgaaCgcttccacaccgagagcctg	8	14	1	2	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	HEXIM2	NM_144608	exon4	c.C595G	p.R199G	TACGAACGCTTCC		36	3	0.08	38	0	0		19		38	2	0.05				G	43246910	C	G	43246910	3	3	29	1	0	0	0	0	1	0	0	0	7117	536	19	5	601	5	HEXIM2	17	43246910	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	5345714	43246910	37948300	68	1977											
OSBPL7	114881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	45891018	45891018	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gctgctgtactccagctcctCgcagagccgctgcagagtgt	12	14	0	2	rs139618928	alternate_allele	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_145798	exon15	c.G1534C	p.E512Q	GCTCCTCGCAGAG		91	14	0.15	99	0	0				14	4	0.29				G	45891018	C	G	45891018	3	3	29	1	0	0	0	0	1	0	0	0	11328	893	31	5	1030	5	OSBPL7	17	45891018	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	2644108	45891018	35304192	69	1978											
CD300A	11314	broad.mit.edu	37	chr17	72469724	72469724	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggcgggccccgtggggggAtccctgagtgtgcagtgtcc	19	11	0	1	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	CD300A	NM_007261	exon2	c.A90G	p.G30G	GGGGGGATCCCTG		62	19	0.31	71	15	0.2112676056		40		14	3	0.21				G	72469724	A	G	72469724	2	3	29	1	0	0	0	0	0	0	0	1	3018	320	12	4		4	CD300A	17	72469724	Silent	SNP	A	TCGA-2G-AAGG-01A-11D-A42Y-10	26578706	72469724	8725486	70	1979											
NARF	26502	mdanderson.org	37	chr17	80436760	80436760	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccccccagcaggtcatggGctctttggtgaaggattatt	12	10	2	1	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_012336	exon6	c.G605A	p.G202D	TCATGGGCTCTTT		24	3	0.13	47	1	0.0212765957				82	0	0				A	80436760	G	A	80436760	3	1	29	1	0	0	0	0	1	0	0	0	10214	1203	42	2	627	2	NARF	17	80436760	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	7967036	80436760	758450	71	1980											
KCTD1	284252	mdanderson.org	37	chr18	24127920	24127920	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccatggtctcgaagtccGggctctgcgccttctcgctc	11	15	3	0	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001142730	exon1	c.C581A	p.P194Q	AAGTCCGGGCTCT		21	3	0.14	28	0	0				5	0	0				T	24127920	G	T	24127920	3	4	29	1	0	0	0	0	1	0	0	0	8139	1116	39	1	2036	1	KCTD1	18	24127920	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10		24127920	53949328	72	1981											
GALNT1	2589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	33263468	33263468	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagattaaaaggagctgctGtgtctaaaggccaagtgatc	11	7	1	2	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_020474	exon4	c.G595T	p.V199L	GCTGCTGTGTCTA		64	21	0.33	102	0	0				99	40	0.4				T	33263468	G	T	33263468	3	4	29	1	0	0	0	0	1	0	0	0	6246	1377	48	3	609	3	GALNT1	18	33263468	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	9135548	33263468	44813780	73	1982											
ZCCHC2	54877	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr18	60191501	60191501	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	accagcgggtcaccctgaggGaacacttggagaggctccgc	14	13	1	2	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_017742	exon1	c.G844A	p.E282K	CTGAGGGAACACT		41	17	0.41	53	0	0				5	2	0.4				A	60191501	G	A	60191501	3	1	29	1	0	0	0	0	1	0	0	0	17644	1175	41	3	846	3	ZCCHC2	18	60191501	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	26928033	60191501	17885747	74	1983											
HMHA1	23526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	1073680	1073680	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gctggccctgcagagtgtccGagttcctcatgggtgaagtg	15	10	1	2	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001258328	exon5	c.G706A	p.E236K	GTGTCCGAGTTCC		38	9	0.24	41	0	0				27	0	0				A	1073680	G	A	1073680	3	1	29	1	0	0	0	0	1	0	0	0	7280	1059	37	1	676	1	HMHA1	19	1073680	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10		1073680	58055303	75	1984											
BTBD2	55643	mdanderson.org	37	chr19	1990038	1990038	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgatggtcatgagcgggaagCgaatgaggcccagggccttg	17	9	1	2	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_017797	exon5	c.G953A	p.R318H	GGGAAGCGAATGA		40	3	0.08	48	0	0				210	0	0				T	1990038	C	T	1990038	3	4	29	1	0	0	0	0	1	0	0	0	1546	768	27	1	644	1	BTBD2	19	1990038	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	916358	1990038	57138945	76	1985											
ZFR2	23217	mdanderson.org	37	chr19	3831705	3831705	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagggcggggggtaggagGtcacgatggaagctgacgac	21	6	1	1	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_015174	exon4	c.C551A	p.T184N	TAGGAGGTCACGA		21	3	0.14	28	0	0				0	0					T	3831705	G	T	3831705	3	4	29	1	0	0	0	0	1	0	0	0	17717	1261	44	3	2332	3	ZFR2	19	3831705	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	1841667	3831705	55297278	77	1986											
FCGBP	8857	broad.mit.edu;mdanderson.org	37	chr19	40366368	40366368	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgcccacagccttgaggtcGtctgcggggtcctggttgta	14	13	1	1	rs151261300	bycluster;byfrequency;alternate_allele	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	FCGBP	NM_003890	exon30	c.C13866G	p.D4622E	GAGGTCGTCTGCG		40	4	0.1	46	0	0		416		57	11	0.19				C	40366368	G	C	40366368	3	2	29	1	0	0	0	0	1	0	0	0	5810	1136	40	5	2379	5	FCGBP	19	40366368	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	36534663	40366368	18762615	78	1987											
SPTBN4	57731	broad.mit.edu;mdanderson.org	37	chr19	41081444	41081444	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	caaccctaagagggaaggcgGagatcgcagggccagcgggc	17	11	0	2	rs372875932		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	SPTBN4,colon,carcinoma,+1,1	SPTBN4	NM_020971	exon36	c.G7664A	p.G2555E	AAGGCGGAGATCG		16	3	0.19	27	0	0		213	1	6	2	0.33				A	41081444	G	A	41081444	3	1	29	1	0	0	0	0	1	0	0	0	15176	1174	41	3	7896	3	SPTBN4	19	41081444	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	715076	41081444	18047539	79	1988											
EML2	24139	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	46116800	46116800	+	Splice_Site	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	atctccccaagggactcactCgaggctgacagcaggggtag	13	12	2	1	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	EML2,NS,carcinoma,0,1	EML2	NM_001193268	exon21	c.G2426T	p.R809L	CTCACTCGAGGCT		45	5	0.11	48	0	0		64	1	99	7	0.07				A	46116800	C	A	46116800	5	1	29	1	0	0	0	0	0	0	1	0	5125	898	31	1	134	1	EML2	19	46116800	Splice_Site	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	5035356	46116800	13012183	80	1989											
GFRA4	64096	broad.mit.edu	37	chr20	3641387	3641400	+	Splice_Site	DEL	CCCGGCCGCGCGTA	CCCGGCCGCGCGTA	-													acccccgccctcgcccggatCccggccgcgcgtacccacga					novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	CCCGGCCGCGCGTA	CCCGGCCGCGCGTA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	GFRA4	.	.	.	.	CCGGATCCCGGCC		10	4	0.4	9	0	0		10		0	0					-	3641400	CCCGGCCGCGCGTA	-	3641387	8	5	29	1	0	1	0	1	0	0	1	0	6391	870	30	0		0	GFRA4	20	3641387	Splice_Site	DEL	CCCGGCCGCGCGTA	TCGA-2G-AAGG-01A-11D-A42Y-10		3641387	59384133	81	1990											
PFDN4	5203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	52830954	52830954	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aaacaaatttgcacggaataCaagtagaatcacagagctga	8	7	1	3	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_002623	exon2	c.C89G	p.T30R	GGAATACAAGTAG		395	117	0.3	372	0	0				97	28	0.29				G	52830954	C	G	52830954	3	3	29	1	0	0	0	0	1	0	0	0	11804	478	17	5	95	5	PFDN4	20	52830954	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	49189567	52830954	10194566	82	1991											
TUBB1	81027	hgsc.bcm.edu;bcgsc.ca	37	chr20	57599434	57599434	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacagtggcctgcattttcCggggcaagatgtccaccaag	11	12	1	1	rs121918555	bycluster;by1000genomes	TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_030773	exon4	c.C952T	p.R318W	ATTTTCCGGGGCA		69	4	0.06	43	0	0	0			0	0					T	57599434	C	T	57599434	3	4	29	1	0	0	0	0	1	0	0	0	16814	643	23	1	966	1	TUBB1	20	57599434	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	4768480	57599434	5426086	83	1992											
ZNRF3	84133	mdanderson.org	37	chr22	29446834	29446834	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaggctagggccctactgCggcctggctgccctccggag	15	16	0	0	rs375016509		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_001206998	exon8	c.C2665T	p.R889W	CTACTGCGGCCTG		23	2	0.09	32	0	0				20	0	0				T	29446834	C	T	29446834	3	4	29	1	0	0	0	0	1	0	0	0	18254	759	27	1	2391	1	ZNRF3	22	29446834	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10		29446834	21857732	84	1993											
SH3BP1	23616	mdanderson.org	37	chr22	38051389	38051389	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctggcagccctgggaccCcccaagccctgccccgacgt	11	20	1	0	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_018957	exon18	c.C1804A	p.P602T	GGGACCCCCCAAG		17	3	0.18	22	0	0				45	0	0				A	38051389	C	A	38051389	3	1	29	1	0	0	0	0	1	0	0	0	14297	623	22	3	1874	3	SH3BP1	22	38051389	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	8604555	38051389	13253177	85	1994											
TTC38	55020	broad.mit.edu	37	chr22	46685729	46685729	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gattgacatttcagagagacGtcttcaaccagctgctgatt	9	9	3	4	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	TTC38,NS,carcinoma,0,1	TTC38	NM_017931	exon13	c.G1249T	p.V417F	AGAGACGTCTTCA		58	3	0.05	67	0	0		40	1	83	0	0				T	46685729	G	T	46685729	3	4	29	1	0	0	0	0	1	0	0	0	16767	1145	40	1	1299	1	TTC38	22	46685729	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	8634340	46685729	4618837	86	1995											
CELSR1	9620	mdanderson.org	37	chr22	46860176	46860176	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggacagtgatgctgttgGtcagcatgtcgtccgtgatg	16	8	1	2	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_014246	exon2	c.C3611A	p.T1204N	CTGTTGGTCAGCA		37	3	0.08	82	0	0				2	0	0				T	46860176	G	T	46860176	3	4	29	1	0	0	0	0	1	0	0	0	3243	1261	44	3	5569	3	CELSR1	22	46860176	Missense_Mutation	SNP	G	TCGA-2G-AAGG-01A-11D-A42Y-10	174447	46860176	4444390	87	1996											
TCEANC	170082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	13681576	13681576	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgacagaggaacacttttcCttcccagctgggtgcggaat	11	10	0	2	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_152634	exon4	c.C1039T	p.L347F	CTTTTCCTTCCCA		123	12	0.1	108	0	0				3	0	0				T	13681576	C	T	13681576	3	4	29	1	0	0	0	0	1	0	0	0	15737	681	24	3	1045	3	TCEANC	23	13681576	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10		13681576	141588984	88	1997											
PHEX	5251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	22208575	22208575	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacaggtggtttacaaatcCgacgactgtcaatgccttct	8	11	2	0	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	.	NM_000444	exon15	c.C1601T	p.P534L	CAAATCCGACGAC		80	21	0.26	67	0	0				3	1	0.33				T	22208575	C	T	22208575	3	4	29	1	0	0	0	0	1	0	0	0	11866	652	23	1	1659	1	PHEX	23	22208575	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	8526999	22208575	133061985	89	1998											
ZNF630	57232	broad.mit.edu	37	chrX	47919586	47919586	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gggaagattcaaggcctttcActctgtctgaaggaagaaga	12	7	4	4	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	ZNF630	NM_001037735	exon5	c.T245A	p.V82E	CCTTTCACTCTGT		66	11	0.17	37	0	0		71		3	0	0				T	47919586	A	T	47919586	3	4	29	1	0	0	0	0	1	0	0	0	18110	159	6	5	1732	5	ZNF630	23	47919586	Missense_Mutation	SNP	A	TCGA-2G-AAGG-01A-11D-A42Y-10	25711011	47919586	107350974	90	1999											
GATA1	2623	broad.mit.edu	37	chrX	48652265	48652265	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaccgcaaggcatctggaaaAgggaaaaagaaacggggctc	13	8	1	1	novel		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	GATA1	NM_002049	exon6	c.A936G	p.K312K	TGGAAAAGGGAAA		134	3	0.02	105	1	0.0095238095		342		1	0	0				G	48652265	A	G	48652265	2	3	29	1	0	0	0	0	0	0	0	1	6292	69	3	4		4	GATA1	23	48652265	Silent	SNP	A	TCGA-2G-AAGG-01A-11D-A42Y-10	732679	48652265	106618295	91	2000											
SLC25A14	9016	broad.mit.edu	37	chrX	129474305	129474305	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctaagggtgaagtttgcaaCggcggccgtgattgtaagcg	15	7	1	2	rs371552768		TCGA-2G-AAGG-01A-11D-A42Y-10	TCGA-2G-AAGG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5e9e9eff-4302-47e1-85c1-a85d559e034e	81975a2c-c83e-4008-8209-835296eeeac4	.	SLC25A14	NM_022810	exon1	c.C53T	p.T18M	TTGCAACGGCGGC		91	3	0.03	91	0	0		49		1	0	0				T	129474305	C	T	129474305	3	4	29	1	0	0	0	0	1	0	0	0	14530	536	19	1	55	1	SLC25A14	23	129474305	Missense_Mutation	SNP	C	TCGA-2G-AAGG-01A-11D-A42Y-10	80822040	129474305	25796255	92	2001											
PTP4A2	8073	mdanderson.org	37	chr1	32375675	32375675	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgcatcttcgtacttcattCcacattcaatcaaagcaagt	4	12	4	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_080391	exon5	c.G359T	p.G120V	TTCATTCCACATT		48	3	0.06	50	0	0				411	0	0				A	32375675	C	A	32375675	3	1	30	1	0	0	0	0	1	0	0	0	12820	855	30	3	152	3	PTP4A2	1	32375675	Missense_Mutation	SNP	C	TCGA-2G-AAGI-01A-11D-A42Y-10		32375675	216874946	1	2002											
FNBP1L	54874	bcgsc.ca	37	chr1	93996313	93996313	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgaccattttgcccctaggCcaaacagcagttgaatctgc	8	13	1	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	FNBP1L	NM_001164473	exon7	c.C512T	p.A171V	CCTAGGCCAAACA		626	1	0	591	1	0.0016920474		56		31	0	0				T	93996313	C	T	93996313	3	4	30	1	0	0	0	0	1	0	0	0	5998	753	26	2	538	2	FNBP1L	1	93996313	Missense_Mutation	SNP	C	TCGA-2G-AAGI-01A-11D-A42Y-10	61620638	93996313	155254308	2	2003											
TRIM46	80128	broad.mit.edu	37	chr1	155148054	155148054	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcctgcctccaccccttccAcccgcagcccccgcctctcc	4	27	1	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	TRIM46	NM_025058	exon2	c.A256C	p.T86P	CCTTCCACCCGCA		128	44	0.34	67	21	0.3134328358		79		1	0	0				C	155148054	A	C	155148054	3	2	30	1	0	0	0	0	1	0	0	0	16581	159	6	4	262	4	TRIM46	1	155148054	Missense_Mutation	SNP	A	TCGA-2G-AAGI-01A-11D-A42Y-10	61151741	155148054	94102567	3	2004											
DCAF8	50717	broad.mit.edu	37	chr1	160188742	160188742	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacaggcaggtgagggtggGgctcaagacagtttacctgg	17	8	1	2	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	DCAF8	NM_015726	exon12	c.C1457A	p.P486H	GGGTGGGGCTCAA		334	6	0.02	249	1	0.0040160643		64		143	0	0				T	160188742	G	T	160188742	3	4	30	1	0	0	0	0	1	0	0	0	4300	1232	43	3	348	3	DCAF8	1	160188742	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	5040688	160188742	89061879	4	2005											
ABL2	27	broad.mit.edu	37	chr1	179198478	179198478	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgccccggatcccgcgggGctgaggctgctggagccccg	17	16	0	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	ABL2	NM_001168238	exon1	c.C55A	p.P19T	CGCGGGGCTGAGG		112	8	0.07	82	2	0.0243902439		307		1	0	0				T	179198478	G	T	179198478	3	4	30	1	0	0	0	0	1	0	0	0	93	1203	42	2	3702	2	ABL2	1	179198478	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	19009736	179198478	70052143	5	2006											
PUM2	23369	broad.mit.edu	37	chr2	20454645	20454645	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcaaatttgtgttgactcAgggctaaaacctttcccctg	9	10	1	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	PUM2	NM_015317	exon18	c.T2849C	p.L950P	TGACTCAGGGCTA		361	5	0.01	229	1	0.0043668122		91		130	0	0				G	20454645	A	G	20454645	3	3	30	1	0	0	0	0	1	0	0	0	12877	188	7	4	357	4	PUM2	2	20454645	Missense_Mutation	SNP	A	TCGA-2G-AAGI-01A-11D-A42Y-10		20454645	222744728	6	2007											
BIRC6	57448	bcgsc.ca	37	chr2	32626436	32626436	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaagatctgcatatgggatGtttccaaacttatgaaggta	10	5	1	2	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	BIRC6	NM_016252	exon7	c.G1240C	p.V414L	TGGGATGTTTCCA		184	0	0	131	0	0		838		13	0	0				C	32626436	G	C	32626436	3	2	30	1	0	0	0	0	1	0	0	0	1437	1377	48	5	1266	5	BIRC6	2	32626436	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	12171791	32626436	210572937	7	2008											
HAAO	23498	broad.mit.edu	37	chr2	43015711	43015711	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtccttcctggtgttgggGcctccgatgaacatgacttt	11	10	0	2	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	HAAO,NS,carcinoma,0,1	HAAO	NM_012205	exon2	c.C117A	p.G39G	GTTGGGGCCTCCG		180	6	0.03	143	4	0.027972028		26	1	27	0	0				T	43015711	G	T	43015711	2	4	30	1	0	0	0	0	0	0	0	1	6977	1190	42	2		2	HAAO	2	43015711	Silent	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	10389275	43015711	200183662	8	2009											
MSH6	2956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr2	48026849	48026849	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cataggtcagttttcagatgAtcgccattgttcgagattta	9	7	2	3	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_000179	exon4	c.A1727C	p.D576A	CAGATGATCGCCA		219	78	0.36	153	0	0				261	85	0.33				C	48026849	A	C	48026849	3	2	30	1	0	0	0	0	1	0	0	0	9922	333	12	4	1741	4	MSH6	2	48026849	Missense_Mutation	SNP	A	TCGA-2G-AAGI-01A-11D-A42Y-10	5011138	48026849	195172524	9	2010											
FOXN2	3344	broad.mit.edu	37	chr2	48602092	48602092	+	Frame_Shift_Del	DEL	A	A	-													tcctcttaaaacagcattgcAaaaaaagaggagttacggca					novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	FOXN2	NM_002158	exon7	c.806delA	p.Q269fs	CATTGCAAAAAAA		533	8	0.02	471	0	0		39		7	0	0				-	48602092	A	-	48602092	7	5	30	1	0	1	0	1	0	0	0	0	6053	130	5	0	824	0	FOXN2	2	48602092	Frame_Shift_Del	DEL	A	TCGA-2G-AAGI-01A-11D-A42Y-10	575243	48602092	194597281	10	2011											
STON1	11037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr2	48809124	48809124	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctctgctttgtgaatgggaAcctggaatgctttttaacct	9	9	1	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001198595	exon3	c.A1352G	p.N451S	ATGGGAACCTGGA		187	44	0.24	148	0	0				13	2	0.15				G	48809124	A	G	48809124	3	3	30	1	0	0	0	0	1	0	0	0	15371	43	2	4	1354	4	STON1	2	48809124	Missense_Mutation	SNP	A	TCGA-2G-AAGI-01A-11D-A42Y-10	207032	48809124	194390249	11	2012											
PSME4	23198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr2	54155274	54155274	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catgcatttactaaagtcatTtggatccaccccaggcaatg	7	11	1	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_014614	exon11	c.A1483G	p.N495D	AGTCATTTGGATC		168	44	0.26	169	0	0				20	7	0.35				C	54155274	T	C	54155274	3	2	30	1	0	0	0	0	1	0	0	0	12757	1841	64	4	4192	4	PSME4	2	54155274	Missense_Mutation	SNP	T	TCGA-2G-AAGI-01A-11D-A42Y-10	5346150	54155274	189044099	12	2013											
ZEB2	9839	mdanderson.org	37	chr2	145147444	145147444	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taggaatacctgtgattcatGtgctgcgagtacgagcccga	12	9	1	1	rs139944383	byfrequency;alternate_allele	TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_014795	exon10	c.C3219A	p.H1073Q	ATTCATGTGCTGC		46	3	0.07	60	0	0				54	0	0				T	145147444	G	T	145147444	3	4	30	1	0	0	0	0	1	0	0	0	17681	1368	48	3	429	3	ZEB2	2	145147444	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	90992170	145147444	98051929	13	2014											
NEB	4703	mdanderson.org	37	chr2	152359335	152359335	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agttctcttgattgcgtttgActctctccatctctggagtg	9	10	3	2	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001271208	exon168	c.T24005C	p.V8002A	CGTTTGACTCTCT		66	3	0.05	92	0	0				0	0					G	152359335	A	G	152359335	3	3	30	1	0	0	0	0	1	0	0	0	10348	275	10	4	1741	4	NEB	2	152359335	Missense_Mutation	SNP	A	TCGA-2G-AAGI-01A-11D-A42Y-10	7211891	152359335	90840038	14	2015											
LRRFIP1	9208	broad.mit.edu	37	chr2	238664755	238664756	+	Frame_Shift_Ins	INS	-	-	C													aggaatttgaaagggaaaaaINScacgcccacagtatactgca					novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	LRRFIP1	NM_001137550	exon16	c.1056_1057insC	p.K352fs	GGAAAAACACGCC		480	8	0.02	397	0	0		171		95	0	0				C	238664756	-	C	238664755	7	5	30	1	0	1	1	0	0	0	0	0	9071	40	2	0	1188	0	LRRFIP1	2	238664755	Frame_Shift_Ins	INS	-	TCGA-2G-AAGI-01A-11D-A42Y-10	86305420	238664755	4534618	15	2016											
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr3	4747945	4747945	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	attgtgcagaaaacagccatGaactggcggctctcagcccg	11	12	1	2	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001099952	exon37	c.G4725T	p.M1575I	AGCCATGAACTGG		108	26	0.24	73	0	0				14	3	0.21				T	4747945	G	T	4747945	3	4	30	1	0	0	0	0	1	0	0	0	7963	1290	45	3	4890	3	ITPR1	3	4747945	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10		4747945	193274485	16	2017											
CMTM8	152189	broad.mit.edu	37	chr3	32280541	32280541	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cgcagagaacttctccaccaGcagcagcagcttcgcctacg	9	16	1	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	CMTM8	NM_178868	exon1	c.G77C	p.S26T	CCACCAGCAGCAG		301	6	0.02	283	2	0.0070671378		9		19	0	0				C	32280541	G	C	32280541	3	2	30	1	0	0	0	0	1	0	0	0	3612	971	34	5	79	5	CMTM8	3	32280541	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	27532596	32280541	165741889	17	2018											
SEPSECS	51091	mdanderson.org	37	chr4	25125839	25125839	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtttgcatggacccaagaGgcacaaccctgaaagaagaa	10	10	0	4	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_016955	exon11	c.C1220A	p.P407H	CCAAGAGGCACAA		51	3	0.06	58	0	0				2	0	0				T	25125839	G	T	25125839	3	4	30	1	0	0	0	0	1	0	0	0	14111	1000	35	3	289	3	SEPSECS	4	25125839	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10		25125839	166028437	18	2019											
KIT	3815	bcgsc.ca	37	chr4	55599338	55599338	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gagacatcaagaatgattctAattatgtggttaaaggaaac	9	4	2	3	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	KIT,NS,malignant_melanoma,0,44	KIT	NM_000222	exon17	c.A2464T	p.N822Y	GATTCTAATTATG		88	0	0	90	0	0		7396	44	11	0	0				T	55599338	A	T	55599338	3	4	30	1	0	0	0	0	1	0	0	0	8371	362	13	5	2530	5	KIT	4	55599338	Missense_Mutation	SNP	A	TCGA-2G-AAGI-01A-11D-A42Y-10	30473499	55599338	135554938	19	2020											
YTHDC1	91746	broad.mit.edu	37	chr4	69202914	69202914	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctcctcttcCtcctcctcctcttcctcctc	0	25	2	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	YTHDC1	NM_001031732	exon4	c.G714A	p.E238E	CTCTTCCTCCTCC		85	3	0.04	110	2	0.0181818182		81		4	1	0.25	rescued with RNA-seq			T	69202914	C	T	69202914	2	4	30	1	0	0	0	0	0	0	0	1	17555	680	24	3		3	YTHDC1	4	69202914	Silent	SNP	C	TCGA-2G-AAGI-01A-11D-A42Y-10	13603576	69202914	121951362	20	2021											
SLC9A3	6550	mdanderson.org	37	chr5	476743	476743	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatgctccgccgtcgctgcTccagagactgcatgtccagg	13	14	0	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_004174	exon12	c.A1805G	p.E602G	CGCTGCTCCAGAG		28	3	0.11	53	0	0				9	0	0				C	476743	T	C	476743	3	2	30	1	0	0	0	0	1	0	0	0	14767	1551	54	4	723	4	SLC9A3	5	476743	Missense_Mutation	SNP	T	TCGA-2G-AAGI-01A-11D-A42Y-10		476743	180438517	21	2022											
FBXO4	26272	mdanderson.org	37	chr5	41925427	41925427	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagccatggcgggaagcgagCcgcgcagcggaacaaactcg	15	12	0	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_033484	exon1	c.C16T	p.P6S	AGCGAGCCGCGCA		35	3	0.09	41	0	0				9	0	0				T	41925427	C	T	41925427	3	4	30	1	0	0	0	0	1	0	0	0	5780	739	26	2	18	2	FBXO4	5	41925427	Missense_Mutation	SNP	C	TCGA-2G-AAGI-01A-11D-A42Y-10	41448684	41925427	138989833	22	2023											
NLN	57486	mdanderson.org	37	chr5	65108215	65108215	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagaagggataatgaatccAgaggtatagtattatttttc	9	3	0	3	rs2254485	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_020726	exon12	c.A1977T	p.P659P	GAATCCAGAGGTA		55	3	0.05	58	0	0				42	0	0				T	65108215	A	T	65108215	2	4	30	1	0	0	0	0	0	0	0	1	10513	175	7	5		5	NLN	5	65108215	Silent	SNP	A	TCGA-2G-AAGI-01A-11D-A42Y-10	23182788	65108215	115807045	23	2024											
HMGCR	3156	broad.mit.edu;mdanderson.org	37	chr5	74651007	74651007	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caacagaaggttgtcttgtgGccagcaccaatagaggctgc	12	10	1	2	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	HMGCR	NM_000859	exon13	c.G1690A	p.A564T	CTTGTGGCCAGCA		160	6	0.04	162	0	0		53		38	0	0				A	74651007	G	A	74651007	3	1	30	1	0	0	0	0	1	0	0	0	7271	1203	42	2	1736	2	HMGCR	5	74651007	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	9542792	74651007	106264253	24	2025											
RANBP17	64901	bcgsc.ca	37	chr5	170669748	170669748	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtctcactcaggaccatatGagcttcatcatcaacttaga	6	11	5	2	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	RANBP17	NM_022897	exon24	c.G2700T	p.M900I	CCATATGAGCTTC		147	1	0.01	152	0	0		108		10	0	0				T	170669748	G	T	170669748	3	4	30	1	0	0	0	0	1	0	0	0	13078	1290	45	3	2794	3	RANBP17	5	170669748	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	96018741	170669748	10245512	25	2026											
MDGA1	266727	broad.mit.edu	37	chr6	37615066	37615066	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctgcgggtggggttgggGgtgtcgaagtaaaactccgg	20	6	0	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	MDGA1	NM_153487	exon10	c.C1929A	p.T643T	GTTGGGGGTGTCG		114	7	0.06	62	0	0		104		3	0	0				T	37615066	G	T	37615066	2	4	30	1	0	0	0	0	0	0	0	1	9455	1219	43	3		3	MDGA1	6	37615066	Silent	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10		37615066	133500001	26	2027											
SDK1	221935	bcgsc.ca	37	chr7	4304811	4304811	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcactccttcgtgaaccactAcatgagcgaccccacctact	6	17	0	2	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	SDK1	NM_152744	exon45	c.A6437G	p.Y2146C	ACCACTACATGAG		134	0	0	82	0	0		361		16	0	0				G	4304811	A	G	4304811	3	3	30	1	0	0	0	0	1	0	0	0	14021	391	14	4	6615	4	SDK1	7	4304811	Missense_Mutation	SNP	A	TCGA-2G-AAGI-01A-11D-A42Y-10		4304811	154833852	27	2028											
AQP1	358	mdanderson.org	37	chr7	30951907	30951907	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaactcgcttggccgcaatgAcgtgagtggggtgtccctgg	16	10	0	2	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_198098	exon1	c.A383G	p.D128G	GCAATGACGTGAG		49	3	0.06	33	0	0				64	0	0				G	30951907	A	G	30951907	3	3	30	1	0	0	0	0	1	0	0	0	818	289	10	4	385	4	AQP1	7	30951907	Missense_Mutation	SNP	A	TCGA-2G-AAGI-01A-11D-A42Y-10	26647096	30951907	128186756	28	2029											
MLL5	55904	bcgsc.ca	37	chr7	104703808	104703808	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aattattcaggaccataattAtggtgctcgtcctcctccga	7	11	1	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	MLL5	NM_018682	exon4	c.A197G	p.Y66C	ATAATTATGGTGC		173	0	0	134	0	0		173		23	0	0				G	104703808	A	G	104703808	3	3	30	1	0	0	0	0	1	0	0	0	9671	449	16	4	207	4	MLL5	7	104703808	Missense_Mutation	SNP	A	TCGA-2G-AAGI-01A-11D-A42Y-10	73751901	104703808	54434855	29	2030											
HYAL4	23553	bcgsc.ca	37	chr7	123508991	123508991	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ggggttattatttatatcctGattgccacaattataacgtt	7	6	0	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	HYAL4	NM_012269	exon3	c.G664A	p.D222N	TATCCTGATTGCC		105	0	0	103	0	0		65		22	0	0				A	123508991	G	A	123508991	3	1	30	1	0	0	0	0	1	0	0	0	7509	1290	45	3	666	3	HYAL4	7	123508991	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	18805183	123508991	35629672	30	2031											
SLC37A3	84255	bcgsc.ca	37	chr7	140064288	140064288	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacgatgccactgatgaataGgccctaaaaataaagcattt	7	8	0	2	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	SLC37A3	NM_207113	exon5	c.C295T	p.L99L	TGAATAGGCCCTA		145	0	0	110	0	0		80		59	0	0				A	140064288	G	A	140064288	2	1	30	1	0	0	0	0	0	0	0	1	14653	991	35	3		3	SLC37A3	7	140064288	Silent	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	16555297	140064288	19074375	31	2032											
EPHB6	2051	bcgsc.ca;mdanderson.org	37	chr7	142562074	142562074	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctcctcctcCtcttcttcctctgcagcgtg	4	21	3	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	EPHB6	NM_004445	exon7	c.C516T	p.S172S	CTCCTCCTCTTCT		103	6	0.06	95	1	0.0105263158		168		6	0	0				T	142562074	C	T	142562074	2	4	30	1	0	0	0	0	0	0	0	1	5206	668	24	3		3	EPHB6	7	142562074	Silent	SNP	C	TCGA-2G-AAGI-01A-11D-A42Y-10	2497786	142562074	16576589	32	2033											
C8orf58	541565	broad.mit.edu	37	chr8	22458529	22458529	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagaggtgtcggcagggagGcactctttctcaaactggcc	13	11	3	1	rs374180743	alternate_allele	TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	C8orf58	NM_001013842	exon2	c.G175A	p.A59T	AGGGAGGCACTCT		192	6	0.03	168	1	0.005952381		17		25	0	0				A	22458529	G	A	22458529	3	1	30	1	0	0	0	0	1	0	0	0	2451	1203	42	2	181	2	C8orf58	8	22458529	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10		22458529	123905493	33	2034											
ZFHX4	79776	mdanderson.org	37	chr8	77775451	77775451	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	actccaccacctccaccaccTcctcctcctcctcctccttc	0	26	0	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	ZFHX4,colon,carcinoma,0,3	ZFHX4	NM_024721	exon11	c.T9501A	p.P3167P	ACCACCTCCTCCT		86	5	0.06	118	0	0		0	3	9	1	0.11				A	77775451	T	A	77775451	2	1	30	1	0	0	0	0	0	0	0	1	17692	1538	54	5		5	ZFHX4	8	77775451	Silent	SNP	T	TCGA-2G-AAGI-01A-11D-A42Y-10	55316922	77775451	68588571	34	2035											
LRP12	29967	bcgsc.ca	37	chr8	105509852	105509852	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgacataatcaccataacCagtaccatcaagtttaaagt	4	9	2	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	LRP12	NM_013437	exon5	c.G928T	p.G310C	CATAACCAGTACC		264	1	0	255	0	0		124		21	0	0				A	105509852	C	A	105509852	3	1	30	1	0	0	0	0	1	0	0	0	8998	594	21	3	1663	3	LRP12	8	105509852	Missense_Mutation	SNP	C	TCGA-2G-AAGI-01A-11D-A42Y-10	27734401	105509852	40854170	35	2036											
CIZ1	25792	mdanderson.org	37	chr9	130941375	130941375	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggctgcacctgcttctgtgGctctgcctcctgctgcagct	11	15	2	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001257975	exon8	c.C1201T	p.P401S	TCTGTGGCTCTGC		87	4	0.05	80	0	0				117	0	0				A	130941375	G	A	130941375	3	1	30	1	0	0	0	0	1	0	0	0	3464	1203	42	2	1625	2	CIZ1	9	130941375	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10		130941375	10272056	36	2037											
ADAMTSL2	9719	mdanderson.org	37	chr9	136404996	136404996	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaagcctctgtacccggGtacctgccgccctggggacc	14	15	1	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	ADAMTSL2,colon,carcinoma,0,1	ADAMTSL2	NM_001145320	exon5	c.412+1G>T	.	ACCCGGGTACCTG		47	3	0.06	51	0	0		0	1	0	0					T	136404996	G	T	136404996	5	4	30	1	0	0	0	0	0	0	1	0	274	1275	44	3	427	3	ADAMTSL2	9	136404996	Splice_Site	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	5463621	136404996	4808435	37	2038											
ANK3	288	bcgsc.ca	37	chr10	61844468	61844468	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgcaaggaagattctacgggAtcattcattttggcaaaaac	9	8	3	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	ANK3	NM_001204404	exon33	c.T3969A	p.D1323E	TACGGGATCATTC		105	0	0	135	0	0		703		20	0	0				T	61844468	A	T	61844468	3	4	30	1	0	0	0	0	1	0	0	0	618	330	12	5	9528	5	ANK3	10	61844468	Missense_Mutation	SNP	A	TCGA-2G-AAGI-01A-11D-A42Y-10		61844468	73690279	38	2039											
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr10	70332383	70332383	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctttttcagaacccagagtcCttaacctgcaatgggtttac	7	11	1	2	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_030625	exon2	c.C288G	p.S96S	AGAGTCCTTAACC		102	38	0.37	104	0	0				7	4	0.57				G	70332383	C	G	70332383	2	3	30	1	0	0	0	0	0	0	0	1	15827	668	24	5		5	TET1	10	70332383	Silent	SNP	C	TCGA-2G-AAGI-01A-11D-A42Y-10	8487915	70332383	65202364	39	2040											
ASCC1	51008	mdanderson.org	37	chr10	73970549	73970549	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgtggggtctgctccacCtcgtaggcatcacagggctc	12	14	2	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001198798	exon3	c.G153A	p.E51E	CTCCACCTCGTAG		54	3	0.06	72	0	0				43	0	0				T	73970549	C	T	73970549	2	4	30	1	0	0	0	0	0	0	0	1	1030	680	24	3		3	ASCC1	10	73970549	Silent	SNP	C	TCGA-2G-AAGI-01A-11D-A42Y-10	3638166	73970549	61564198	40	2041											
STAMBPL1	57559	bcgsc.ca	37	chr10	90672864	90672864	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccacactttttagaacaaaTataaagctgaaattctcaaa	4	8	1	2	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	STAMBPL1	NM_020799	exon6	c.T427C	p.Y143H	AACAAATATAAAG		46	0	0	38	0	0		63		27	0	0				C	90672864	T	C	90672864	3	2	30	1	0	0	0	0	1	0	0	0	15306	1406	49	4	445	4	STAMBPL1	10	90672864	Missense_Mutation	SNP	T	TCGA-2G-AAGI-01A-11D-A42Y-10	16702315	90672864	44861883	41	2042											
CYP26A1	0	broad.mit.edu;mdanderson.org	37	chr10	94834916	94834916	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgctcagggcatgaaggCgcggaacctcattcacgcgc	13	14	3	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	CYP26A1,NS,carcinoma,0,1	CYP26A1	NM_000783	exon4	c.C716A	p.A239E	TGAAGGCGCGGAA		90	6	0.07	126	2	0.0158730159		59	1	7	0	0				A	94834916	C	A	94834916	3	1	30	1	0	0	0	0	1	0	0	0	4178	768	27	1	730	1	CYP26A1	10	94834916	Missense_Mutation	SNP	C	TCGA-2G-AAGI-01A-11D-A42Y-10	4162052	94834916	40699831	42	2043											
MMS19	64210	bcgsc.ca	37	chr10	99218609	99218609	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	caccagtctcttcttgtcatCcaggggtttggctaaggccc	10	13	3	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	MMS19	NM_022362	exon30	c.G3013A	p.D1005N	TGTCATCCAGGGG		168	0	0	150	0	0		36		115	0	0				T	99218609	C	T	99218609	3	4	30	1	0	0	0	0	1	0	0	0	9720	855	30	3	87	3	MMS19	10	99218609	Missense_Mutation	SNP	C	TCGA-2G-AAGI-01A-11D-A42Y-10	4383693	99218609	36316138	43	2044											
SEC31B	25956	bcgsc.ca	37	chr10	102250017	102250017	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaagaggccatgtcccagGgaatcccaccgggttaggaa	14	10	0	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	SEC31B	NM_015490	exon21	c.C2713T	p.P905S	TCCCAGGGAATCC		127	0	0	137	0	0		84		4	0	0				A	102250017	G	A	102250017	3	1	30	1	0	0	0	0	1	0	0	0	14052	1232	43	3	850	3	SEC31B	10	102250017	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	3031408	102250017	33284730	44	2045											
NRAP	4892	broad.mit.edu	37	chr10	115383357	115383357	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaagacgcagctcaaacccTtttgctttctggttttccca	6	13	3	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	NRAP	NM_001261463	exon23	c.A2388G	p.K796K	AAACCCTTTTGCT		133	4	0.03	177	0	0		208		0	0					C	115383357	T	C	115383357	2	2	30	1	0	0	0	0	0	0	0	1	10685	1606	56	4		4	NRAP	10	115383357	Silent	SNP	T	TCGA-2G-AAGI-01A-11D-A42Y-10	13133340	115383357	20151390	45	2046											
CKAP5	9793	bcgsc.ca	37	chr11	46812057	46812057	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ctatttctttagtctccagtCctttcttgttcttggttcca	5	11	4	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	CKAP5	NM_014756	exon14	c.G1727C	p.G576A	TCCAGTCCTTTCT		128	0	0	165	0	0		134		50	0	0				G	46812057	C	G	46812057	3	3	30	1	0	0	0	0	1	0	0	0	3468	855	30	5	4495	5	CKAP5	11	46812057	Missense_Mutation	SNP	C	TCGA-2G-AAGI-01A-11D-A42Y-10		46812057	88194459	46	2047											
SLC15A3	51296	mdanderson.org	37	chr11	60718684	60718684	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgggcagcaggcccgaggCggccaggtagagcagcaggc	20	12	0	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_016582	exon1	c.G340A	p.A114T	CCGAGGCGGCCAG		12	2	0.17	18	0	0				8	0	0				T	60718684	C	T	60718684	3	4	30	1	0	0	0	0	1	0	0	0	14454	768	27	1	1437	1	SLC15A3	11	60718684	Missense_Mutation	SNP	C	TCGA-2G-AAGI-01A-11D-A42Y-10	13906627	60718684	74287832	47	2048											
POU2F3	25833	mdanderson.org	37	chr11	120176445	120176445	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gccctcaacctgagcttcaaGaacatgtgcaagctcaagcc	8	14	3	2	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001244682	exon8	c.G726A	p.K242K	CTTCAAGAACATG		50	3	0.06	111	0	0				4	0	0				A	120176445	G	A	120176445	2	1	30	1	0	0	0	0	0	0	0	1	12318	933	33	3		3	POU2F3	11	120176445	Silent	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	59457761	120176445	14830071	48	2049											
WNT5B	81029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr12	1755317	1755317	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgtggctacaaccagttcAagagcgtgcaggtggagcgc	16	10	1	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_032642	exon5	c.A979G	p.K327E	CAGTTCAAGAGCG		133	55	0.41	61	0	0				56	24	0.43				G	1755317	A	G	1755317	3	3	30	1	0	0	0	0	1	0	0	0	17451	131	5	4	993	4	WNT5B	12	1755317	Missense_Mutation	SNP	A	TCGA-2G-AAGI-01A-11D-A42Y-10		1755317	132096578	49	2050											
CLSTN3	9746	broad.mit.edu	37	chr12	7302201	7302201	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgggggatgacctggatccCgagcgggaaagcctgctcct	16	11	0	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	CLSTN3	NM_014718	exon14	c.C2157A	p.P719P	GGATCCCGAGCGG		321	4	0.01	120	0	0		84		221	0	0				A	7302201	C	A	7302201	2	1	30	1	0	0	0	0	0	0	0	1	3586	639	23	1		1	CLSTN3	12	7302201	Silent	SNP	C	TCGA-2G-AAGI-01A-11D-A42Y-10	5546884	7302201	126549694	50	2051											
ESYT1	23344	mdanderson.org	37	chr12	56532268	56532268	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctatccatctatatggagcgGgcagaggacctcccggtgag	13	11	1	2	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	ESYT1,caecum,carcinoma,+2,2	ESYT1	NM_001184796	exon22	c.G2448A	p.R816R	GGAGCGGGCAGAG		53	3	0.06	42	0	0		2	2	109	0	0				A	56532268	G	A	56532268	2	1	30	1	0	0	0	0	0	0	0	1	5292	1219	43	3		3	ESYT1	12	56532268	Silent	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	49230067	56532268	77319627	51	2052											
TPTE2	93492	broad.mit.edu	37	chr13	20025336	20025336	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tagactcgatagtggtttcgAtgtttcttatctagaaaccg	9	7	2	2	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	TPTE2	NM_199254	exon12	c.T771C	p.H257H	GTTTCGATGTTTC		93	5	0.05	86	1	0.011627907		225		0	0					G	20025336	A	G	20025336	2	3	30	1	0	0	0	0	0	0	0	1	16491	330	12	4		4	TPTE2	13	20025336	Silent	SNP	A	TCGA-2G-AAGI-01A-11D-A42Y-10		20025336	95144542	52	2053											
KLHDC2	23588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr14	50249093	50249093	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgttttaaatgcaggttatGgcacacagcttgtgccagcg	11	8	0	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_014315	exon11	c.G962C	p.W321S	GGTTATGGCACAC		165	39	0.24	119	0	0				155	41	0.26				C	50249093	G	C	50249093	3	2	30	1	0	0	0	0	1	0	0	0	8398	1357	47	5	1004	5	KLHDC2	14	50249093	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10		50249093	57100447	53	2054											
ACOT6	641372	broad.mit.edu	37	chr14	74086410	74086410	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agcttctgtgcacgctgtttTgggtgaggcaatattctatg	12	7	2	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	ACOT6	NM_001037162	exon2	c.T491G	p.L164W	CTGTTTTGGGTGA		145	9	0.06	98	3	0.0306122449		12		1	0	0				G	74086410	T	G	74086410	3	3	30	1	0	0	0	0	1	0	0	0	154	1821	63	4	497	4	ACOT6	14	74086410	Missense_Mutation	SNP	T	TCGA-2G-AAGI-01A-11D-A42Y-10	23837317	74086410	33263130	54	2055											
UBE3A	7337	broad.mit.edu	37	chr15	25584318	25584318	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctttggcatacgtgatgGccttcaacaatctctcttta	6	11	3	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	UBE3A	NM_000462	exon14	c.C2594A	p.A865D	GTGATGGCCTTCA		57	3	0.05	72	1	0.0138888889		109		43	0	0				T	25584318	G	T	25584318	3	4	30	1	0	0	0	0	1	0	0	0	16939	1203	42	2	37	2	UBE3A	15	25584318	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10		25584318	76947074	55	2056											
SLCO3A1	28232	mdanderson.org	37	chr15	92647550	92647550	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgacccccgctggatcggaGcctggtggggtggctttctg	16	12	1	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_013272	exon4	c.G787T	p.A263S	ATCGGAGCCTGGT		50	3	0.06	87	0	0				6	0	0				T	92647550	G	T	92647550	3	4	30	1	0	0	0	0	1	0	0	0	14782	971	34	2	801	2	SLCO3A1	15	92647550	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	67063232	92647550	9883842	56	2057											
MCTP2	55784	mdanderson.org	37	chr15	94841503	94841503	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcatgcagccatggatctGgataaaccatctgtttgggg	11	9	3	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_018349	exon1	c.G9T	p.L3L	GGATCTGGATAAA		31	3	0.1	49	1	0.0204081633				2	0	0				T	94841503	G	T	94841503	2	4	30	1	0	0	0	0	0	0	0	1	9450	1335	47	3		3	MCTP2	15	94841503	Silent	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	2193953	94841503	7689889	57	2058											
ADAMTS17	170691	broad.mit.edu	37	chr15	100672218	100672218	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcaggggacttacggggggTtgtcacatttcctctgcctg	14	10	3	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	ADAMTS17	NM_139057	exon12	c.A1715C	p.N572T	GGGGGGTTGTCAC		86	25	0.29	83	9	0.1084337349		127		0	0					G	100672218	T	G	100672218	3	3	30	1	0	0	0	0	1	0	0	0	261	1725	60	4	1616	4	ADAMTS17	15	100672218	Missense_Mutation	SNP	T	TCGA-2G-AAGI-01A-11D-A42Y-10	5830715	100672218	1859174	58	2059											
RHBDF1	64285	hgsc.bcm.edu	37	chr16	108513	108513	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatctggcagcgtttccgGtacaggtcgaacttgccaaa	11	10	1	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_022450	exon18	c.C2394A	p.Y798X	TTTCCGGTACAGG		132	6	0.05	162	0	0				68	0	0				T	108513	G	T	108513	4	4	30	1	0	0	0	0	0	1	0	0	13368	1256	44	3	177	3	RHBDF1	16	108513	Nonsense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10		108513	90246240	59	2060											
NPRL3	8131	bcgsc.ca	37	chr16	139811	139811	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcggacggggctcctcctcGctgggtgaggccatcaggca	16	14	1	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	NPRL3	.	.	.	.	CTCCTCGCTGGGT		70	0	0	61	0	0		73		44	0	0				T	139811	G	T	139811	3	4	30	1	0	0	0	0	1	0	0	0	10645	1078	38	1	469	1	NPRL3	16	139811	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	31298	139811	90214942	60	2061											
PKD1	5310	mdanderson.org	37	chr16	2158642	2158642	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtaggtgacgcagtcgcGcaggtcaacgtgggcctcca	15	12	1	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001009944	exon15	c.C6526A	p.R2176S	AGTCGCGCAGGTC		48	3	0.06	61	0	0				7	0	0				T	2158642	G	T	2158642	3	4	30	1	0	0	0	0	1	0	0	0	12010	1087	38	1	6513	1	PKD1	16	2158642	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	2018831	2158642	88196111	61	2062											
SMG1	23049	ucsc.edu;mdanderson.org	37	chr16	18846457	18846457	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaactgacacactgttgggGgtggctggggagcatattgc	16	7	0	2	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	SMG1	NM_015092	exon49	c.C8087A	p.P2696H	GTTGGGGGTGGCT		54	5	0.09	74	0	0		401		26	0	0				T	18846457	G	T	18846457	3	4	30	1	0	0	0	0	1	0	0	0	14848	1232	43	3	2958	3	SMG1	16	18846457	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	16687815	18846457	71508296	62	2063											
SRCAP	10847	hgsc.bcm.edu;mdanderson.org	37	chr16	30732775	30732775	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcgcctcattctatctccCgatatgcaggctcgcctgcc	8	17	3	0	rs368322185	alternate_allele	TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	SRCAP,NS,carcinoma,+2,1	SRCAP	NM_006662	exon21	c.C3519A	p.P1173P	ATCTCCCGATATG		29	2	0.07	56	0	0		2	1	37	0	0				A	30732775	C	A	30732775	2	1	30	1	0	0	0	0	0	0	0	1	15190	639	23	1		1	SRCAP	16	30732775	Silent	SNP	C	TCGA-2G-AAGI-01A-11D-A42Y-10	11886318	30732775	59621978	63	2064											
PELP1	27043	mdanderson.org	37	chr17	4594224	4594224	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgaagccaagacacacagtGctgctggaatagctctgtgg	12	11	1	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_014389	exon3	c.C379A	p.H127N	CACAGTGCTGCTG		108	5	0.05	97	0	0				142	1	0.01				T	4594224	G	T	4594224	3	4	30	1	0	0	0	0	1	0	0	0	11771	1319	46	2	3073	2	PELP1	17	4594224	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10		4594224	76600986	64	2065											
AIPL1	23746	mdanderson.org	37	chr17	6328803	6328803	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgcagcgagtgccctgGggacgggggtggctctgtgg	21	9	1	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_014336	exon6	c.C1132A	p.P378T	GCCCTGGGGACGG		12	2	0.17	16	0	0				12	0	0				T	6328803	G	T	6328803	3	4	30	1	0	0	0	0	1	0	0	0	433	1232	43	3	26	3	AIPL1	17	6328803	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	1734579	6328803	74866407	65	2066											
DRG2	1819	mdanderson.org	37	chr17	18002382	18002382	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctggaatcattgaaggcGcagcccaaggtgggaggcag	15	9	1	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001388	exon4	c.G367A	p.A123T	GAAGGCGCAGCCC		93	5	0.05	52	0	0				76	0	0				A	18002382	G	A	18002382	3	1	30	1	0	0	0	0	1	0	0	0	4788	1087	38	1	381	1	DRG2	17	18002382	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	11673579	18002382	63192828	66	2067											
MAPK7	5598	broad.mit.edu	37	chr17	19285118	19285118	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagcgcacccctggaggCtcctgagcctcggaagccgg	13	18	0	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	MAPK7,NS,carcinoma,0,2	MAPK7	NM_002749	exon5	c.C1502A	p.A501D	TGGAGGCTCCTGA		72	6	0.08	66	1	0.0151515152		72	2	68	12	0.18				A	19285118	C	A	19285118	3	1	30	1	0	0	0	0	1	0	0	0	9331	797	28	2	1516	2	MAPK7	17	19285118	Missense_Mutation	SNP	C	TCGA-2G-AAGI-01A-11D-A42Y-10	1282736	19285118	61910092	67	2068											
PIPOX	51268	broad.mit.edu	37	chr17	27380007	27380007	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	acaatccaggccaatctgtcGaggcagagggtagaacacca	11	11	1	2	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	PIPOX	NM_016518	exon3	c.G333T	p.S111S	TCTGTCGAGGCAG		219	6	0.03	145	0	0		42		31	0	0				T	27380007	G	T	27380007	2	4	30	1	0	0	0	0	0	0	0	1	11990	1045	37	1		1	PIPOX	17	27380007	Silent	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	8094889	27380007	53815203	68	2069											
PLEKHM1	9842	bcgsc.ca	37	chr17	43522989	43522989	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggttgatgaggggctggGcccggatctgtgtcagaaac	17	8	2	3	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	PLEKHM1	NM_014798	exon9	c.C2684T	p.A895V	GGCTGGGCCCGGA		151	0	0	118	0	0		69		28	0	0				A	43522989	G	A	43522989	3	1	30	1	0	0	0	0	1	0	0	0	12127	1203	42	2	502	2	PLEKHM1	17	43522989	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	16142982	43522989	37672221	69	2070											
RGS9	8787	mdanderson.org	37	chr17	63133690	63133690	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acaccaaggccagcagtacaGgccgaggatggcatttctcc	11	13	1	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001081955	exon1	c.G32T	p.R11M	AGTACAGGCCGAG		56	3	0.05	48	0	0				8	1	0.13				T	63133690	G	T	63133690	3	4	30	1	0	0	0	0	1	0	0	0	13362	1000	35	3	34	3	RGS9	17	63133690	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	19610701	63133690	18061520	70	2071											
PRPSAP1	5635	mdanderson.org	37	chr17	74349755	74349755	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagccgaggacgcggagggCgggggcaacagcagcagctt	18	10	0	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_002766	exon1	c.G30A	p.P10P	GGAGGGCGGGGGC		34	3	0.09	25	0	0				18	0	0				T	74349755	C	T	74349755	2	4	30	1	0	0	0	0	0	0	0	1	12632	755	27	1		1	PRPSAP1	17	74349755	Silent	SNP	C	TCGA-2G-AAGI-01A-11D-A42Y-10	11216065	74349755	6845455	71	2072											
DSG2	1829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr18	29122743	29122743	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaagggccacaggggcttcCagagacatggccggagctca	15	12	1	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	DSG2,NS,malignant_melanoma,+1,2	DSG2	NM_001943	exon14	c.C2262T	p.S754S	GGCTTCCAGAGAC		88	35	0.4	115	0	0		1	2	138	58	0.42				T	29122743	C	T	29122743	2	4	30	1	0	0	0	0	0	0	0	1	4803	581	21	3		3	DSG2	18	29122743	Silent	SNP	C	TCGA-2G-AAGI-01A-11D-A42Y-10		29122743	48954505	72	2073											
KIAA1468	57614	mdanderson.org	37	chr18	59854893	59854893	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcctagatcctggctctgCgggctcgctgtcgccacagg	14	14	1	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_020854	exon1	c.C155T	p.A52V	GCTCTGCGGGCTC		49	3	0.06	77	0	0				6	0	0				T	59854893	C	T	59854893	3	4	30	1	0	0	0	0	1	0	0	0	8277	768	27	1	157	1	KIAA1468	18	59854893	Missense_Mutation	SNP	C	TCGA-2G-AAGI-01A-11D-A42Y-10	30732150	59854893	18222355	73	2074											
DIRAS1	148252	mdanderson.org	37	chr19	2717599	2717599	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggacaggcgctgcatggccGggaactggtggctgccggtg	19	10	0	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	DIRAS1,bladder,carcinoma,0,1	DIRAS1	NM_145173	exon2	c.C206T	p.P69L	ATGGCCGGGAACT		64	3	0.05	60	0	0		0	1	12	0	0				A	2717599	G	A	2717599	3	1	30	1	0	0	0	0	1	0	0	0	4558	1116	39	1	394	1	DIRAS1	19	2717599	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10		2717599	56411384	74	2075											
DOHH	83475	broad.mit.edu	37	chr19	3496745	3496745	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaacagcgcccggaagcggGcctgcaggggctgcttgggg	19	11	0	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	DOHH	NM_001145165	exon2	c.C68A	p.A23D	AAGCGGGCCTGCA		61	7	0.11	44	0	0		12		50	3	0.06				T	3496745	G	T	3496745	3	4	30	1	0	0	0	0	1	0	0	0	4722	1203	42	2	856	2	DOHH	19	3496745	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	779146	3496745	55632238	75	2076											
CACNA1A	773	mdanderson.org	37	chr19	13318657	13318657	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgctggtggccgcccggcCcggcctggccaccgcctgct	15	20	0	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001127222	exon47	c.G6991T	p.G2331C	CCCGGCCCGGCCT		13	4	0.31	8	0	0				0	0					A	13318657	C	A	13318657	3	1	30	1	0	0	0	0	1	0	0	0	2556	623	22	3	533	3	CACNA1A	19	13318657	Missense_Mutation	SNP	C	TCGA-2G-AAGI-01A-11D-A42Y-10	9821912	13318657	45810326	76	2077											
LRP3	4037	mdanderson.org	37	chr19	33697230	33697230	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggtcatcgcgctgggctgCgccttcaagctctactcact	10	15	4	0	rs139510018	bycluster;by1000genomes	TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_002333	exon5	c.C1554T	p.C518C	GGGCTGCGCCTTC		47	3	0.06	39	0	0	0.001			102	0	0				T	33697230	C	T	33697230	2	4	30	1	0	0	0	0	0	0	0	1	9002	776	27	1		1	LRP3	19	33697230	Silent	SNP	C	TCGA-2G-AAGI-01A-11D-A42Y-10	20378573	33697230	25431753	77	2078											
U2AF1L4	199746	mdanderson.org	37	chr19	36233689	36233689	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cggggatggtggccagtatgGaacctcgggggtgacctggg	20	8	0	1	rs187720109	bycluster;by1000genomes	TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001040425	exon6	c.C477A	p.F159L	AGTATGGAACCTC		21	3	0.14	30	0	0				41	0	0				T	36233689	G	T	36233689	3	4	30	1	0	0	0	0	1	0	0	0	16882	1174	41	3	193	3	U2AF1L4	19	36233689	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	2536459	36233689	22895294	78	2079											
RYR1	6261	bcgsc.ca	37	chr19	38948767	38948767	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtactttgaggtgatggtgGacgaggtgactccatttctg	15	6	1	3	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	RYR1	NM_001042723	exon18	c.G2002T	p.D668Y	ATGGTGGACGAGG		76	0	0	91	0	0		708		0	0					T	38948767	G	T	38948767	3	4	30	1	0	0	0	0	1	0	0	0	13819	1174	41	3	2072	3	RYR1	19	38948767	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	2715078	38948767	20180216	79	2080											
ASXL1	171023	broad.mit.edu;mdanderson.org	37	chr20	31017716	31017716	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccttcagggttctcgggctGccacgccgatggcgagagcg	16	13	2	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	ASXL1	NM_015338	exon7	c.G578A	p.C193Y	CGGGCTGCCACGC		35	3	0.09	32	0	0		1114		20	0	0				A	31017716	G	A	31017716	3	1	30	1	0	0	0	0	1	0	0	0	1065	1319	46	2	614	2	ASXL1	20	31017716	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10		31017716	32007804	80	2081											
BAGE	85319	broad.mit.edu	37	chr21	11096512	11096516	+	RNA	DEL	GTTTT	GTTTT	-													cagtgcctaaccatttttaaGttttgttttgttttgttttg					rs139100150	alternate_allele	TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	GTTTT	GTTTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	.	.	.	.	TTTTAAGTTTTGT		7	5	0.71	4	0	0				0	0					-	11096516	GTTTT	-	11096512	6	5	30	0	1	1	0	1	0	0	0	0	1289	1044	36	0		0	BAGE	21	11096512	RNA	DEL	GTTTT	TCGA-2G-AAGI-01A-11D-A42Y-10		11096512	37033383	81	2082											
UMODL1	89766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr21	43531009	43531009	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgacctggtgagccccatGggcggtggactgtctgcggc	18	11	1	2	rs200274014		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_173568	exon11	c.G1677A	p.M559I	CCCCATGGGCGGT		307	74	0.24	182	0	0				0	0					A	43531009	G	A	43531009	3	1	30	1	0	0	0	0	1	0	0	0	17039	1348	47	3	1719	3	UMODL1	21	43531009	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	32434497	43531009	4598886	82	2083											
SLC37A1	54020	bcgsc.ca	37	chr21	43999906	43999906	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcagctacgggggaccaaGttccgtaagtcccactcggg	14	12	1	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	SLC37A1	NM_018964	exon20	c.G1582A	p.V528I	GACCAAGTTCCGT		105	0	0	42	0	0		48		58	0	0				A	43999906	G	A	43999906	3	1	30	1	0	0	0	0	1	0	0	0	14651	1029	36	3	1652	3	SLC37A1	21	43999906	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	468897	43999906	4129989	83	2084											
LRP5L	91355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr22	25755835	25755835	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atggcacggggctcgtccatGtcctctgacaccaggatctt	11	13	2	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_001135772	exon3	c.C225T	p.D75D	GTCCATGTCCTCT		122	71	0.58	163	0	0				11	10	0.91				A	25755835	G	A	25755835	2	1	30	1	0	0	0	0	0	0	0	1	9005	1368	48	3		3	LRP5L	22	25755835	Silent	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10		25755835	25548731	84	2085											
SYN3	8224	mdanderson.org	37	chr22	33265025	33265025	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagccctccatactgcagGccgatgaccaggctgcggta	13	14	0	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_003490	exon4	c.C549A	p.G183G	CTGCAGGCCGATG		49	3	0.06	95	0	0				2	0	0				T	33265025	G	T	33265025	2	4	30	1	0	0	0	0	0	0	0	1	15498	1190	42	2		2	SYN3	22	33265025	Silent	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	7509190	33265025	18039541	85	2086											
KCTD17	79734	mdanderson.org	37	chr22	37456899	37456899	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tggaggagcagcagcagcagGaggaggaggtggaggaggtg	23	4	0	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_024681	exon6	c.G670C	p.E224Q	CAGCAGGAGGAGG		54	3	0.06	46	0	0				1	1	1				C	37456899	G	C	37456899	3	2	30	1	0	0	0	0	1	0	0	0	8147	1175	41	5	692	5	KCTD17	22	37456899	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	4191874	37456899	13847667	86	2087											
TTC38	55020	mdanderson.org	37	chr22	46664423	46664423	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgtaggcctggaaggatGcgaggctcccgctctccacc	13	14	2	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	.	NM_017931	exon2	c.G46T	p.A16S	AAGGATGCGAGGC		66	4	0.06	82	1	0.012195122				30	0	0				T	46664423	G	T	46664423	3	4	30	1	0	0	0	0	1	0	0	0	16767	1319	46	2	52	2	TTC38	22	46664423	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	9207524	46664423	4640143	87	2088											
CNKSR2	22866	broad.mit.edu	37	chrX	21450746	21450746	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaattatggcttggaaaCagaaaatctaaaaacccttt	6	7	2	2	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	CNKSR2	NM_001168647	exon3	c.C245A	p.T82K	TGGAAACAGAAAA		355	11	0.03	189	3	0.0158730159		158		0	0					A	21450746	C	A	21450746	3	1	30	1	0	0	0	0	1	0	0	0	3630	478	17	3	255	3	CNKSR2	23	21450746	Missense_Mutation	SNP	C	TCGA-2G-AAGI-01A-11D-A42Y-10		21450746	133819814	88	2089											
POLA1	5422	broad.mit.edu	37	chrX	24759594	24759594	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gttcttccattagcattgcaGatcactaacatcgctgggaa	8	10	2	1	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	POLA1	NM_016937	exon21	c.G2301T	p.Q767H	ATTGCAGATCACT		184	5	0.03	66	0	0		117		27	0	0				T	24759594	G	T	24759594	3	4	30	1	0	0	0	0	1	0	0	0	12234	933	33	3	2383	3	POLA1	23	24759594	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	3308848	24759594	130510966	89	2090											
RBM10	8241	bcgsc.ca	37	chrX	47039331	47039331	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accatggattccatcctgggGgccctggcaccctacgcggt	12	15	0	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	RBM10	NM_001204468	exon10	c.G1149T	p.G383G	CCTGGGGGCCCTG		237	0	0	134	0	0		117		71	0	0				T	47039331	G	T	47039331	2	4	30	1	0	0	0	0	0	0	0	1	13162	1219	43	3		3	RBM10	23	47039331	Silent	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	22279737	47039331	108231229	90	2091											
SYN1	6853	broad.mit.edu	37	chrX	47478985	47478985	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggacctctcggcagtggcgGtcccgggaccgggcgtggct	18	13	1	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	SYN1	NM_006950	exon1	c.C143T	p.T48I	GTGGCGGTCCCGG		56	3	0.05	45	0	0		84		2	0	0				A	47478985	G	A	47478985	3	1	30	1	0	0	0	0	1	0	0	0	15496	1261	44	3	2026	3	SYN1	23	47478985	Missense_Mutation	SNP	G	TCGA-2G-AAGI-01A-11D-A42Y-10	439654	47478985	107791575	91	2092											
MAGEC1	9947	broad.mit.edu	37	chrX	140993906	140993908	+	In_Frame_Del	DEL	CCT	CCT	-													tctccagattcctgtgagccCctcctcctcctccactttac					novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	CCT	CCT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	MAGEC1	NM_005462	exon4	c.716_718del	p.239_240del	TGAGCCCCTCCTC		1569	8	0.01	1002	0	0		317		0	0					-	140993908	CCT	-	140993906	7	5	30	1	0	1	0	1	0	0	0	0	9229	623	22	0	722	0	MAGEC1	23	140993906	In_Frame_Del	DEL	CCT	TCGA-2G-AAGI-01A-11D-A42Y-10	93514921	140993906	14276654	92	2093											
PLXNB3	5365	broad.mit.edu	37	chrX	153039474	153039474	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcttcctgtaccagcccaAcccccgcctggcacccctca	8	21	1	0	novel		TCGA-2G-AAGI-01A-11D-A42Y-10	TCGA-2G-AAGI-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	30f7d68d-4e46-4877-aecf-41abb5337d40	30b85f09-03f5-4f99-9b77-03a51c118dc8	.	PLXNB3	NM_001163257	exon21	c.A3509C	p.N1170T	AGCCCAACCCCCG		58	13	0.22	39	5	0.1282051282		208		1	0	0				C	153039474	A	C	153039474	3	2	30	1	0	0	0	0	1	0	0	0	12172	43	2	4	3632	4	PLXNB3	23	153039474	Missense_Mutation	SNP	A	TCGA-2G-AAGI-01A-11D-A42Y-10	12045568	153039474	2231086	93	2094											
DVL1	1855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	1273785	1273785	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctccttgaagccctccacGtgtgtgtacagccagtccac	9	16	0	1	rs151161721		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_004421	exon13	c.C1296T	p.H432H	CTCCACGTGTGTG		83	12	0.14	47	0	0	0			203	41	0.2				A	1273785	G	A	1273785	2	1	31	1	0	0	0	0	0	0	0	1	4861	1136	40	1		1	DVL1	1	1273785	Silent	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10		1273785	247976836	1	2095											
FOXE3	2301	broad.mit.edu	37	chr1	47882404	47882404	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccgcgagccgggcaacccGggcaagggcaactactggac	14	16	0	0	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	FOXE3	NM_012186	exon1	c.G417T	p.P139P	CAACCCGGGCAAG		149	5	0.03	175	0	0		8		1	0	0				T	47882404	G	T	47882404	2	4	31	1	0	0	0	0	0	0	0	1	6037	1103	39	1		1	FOXE3	1	47882404	Silent	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	46608619	47882404	201368217	2	2096											
SEMA6C	10500	bcgsc.ca	37	chr1	151110195	151110195	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacctccttaccctccccaGccgagcatcctccacagaga	5	21	0	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	SEMA6C	NM_001178061	exon10	c.C748A	p.L250M	TCCCCAGCCGAGC		131	6	0.05	90	0	0		70		11	0	0				T	151110195	G	T	151110195	3	4	31	1	0	0	0	0	1	0	0	0	14094	962	34	2	2184	2	SEMA6C	1	151110195	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	103227791	151110195	98140426	3	2097											
TCHH	7062	broad.mit.edu	37	chr1	152081419	152081419	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	attttctgtcacgctcttggCggctcagctgctgttcctcc	9	14	4	0	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	TCHH	NM_007113	exon3	c.G4274T	p.R1425L	TCTTGGCGGCTCA		150	6	0.04	135	0	0		275		0	0					A	152081419	C	A	152081419	3	1	31	1	0	0	0	0	1	0	0	0	15759	768	27	1	1561	1	TCHH	1	152081419	Missense_Mutation	SNP	C	TCGA-2G-AAGJ-01A-11D-A42Y-10	971224	152081419	97169202	4	2098											
OR10J3	441911	broad.mit.edu	37	chr1	159284389	159284389	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gacaagtttgtgctgccgccTgaagctggagaaaccttcaa	11	10	1	2	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	OR10J3,right_upper_lobe,carcinoma,+1,1	OR10J3	NM_001004467	exon1	c.A61G	p.R21G	GCCGCCTGAAGCT		205	3	0.01	216	0	0		86	1	0	0					C	159284389	T	C	159284389	3	2	31	1	0	0	0	0	1	0	0	0	10958	1579	55	4	930	4	OR10J3	1	159284389	Missense_Mutation	SNP	T	TCGA-2G-AAGJ-01A-11D-A42Y-10	7202970	159284389	89966232	5	2099											
IGSF9	57549	mdanderson.org	37	chr1	159901663	159901663	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaggggatgagcagctccCgccctacttcttggaaatat	11	11	1	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001135050	exon11	c.G1301A	p.R434Q	AGCTCCCGCCCTA		53	3	0.06	72	0	0				4	0	0				T	159901663	C	T	159901663	3	4	31	1	0	0	0	0	1	0	0	0	7648	652	23	1	2282	1	IGSF9	1	159901663	Missense_Mutation	SNP	C	TCGA-2G-AAGJ-01A-11D-A42Y-10	617274	159901663	89348958	6	2100											
ZBTB37	84614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	173839947	173839947	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctcctgaggagtccaccaGccctcagatcattgaaccaa	7	15	2	3	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_032522	exon3	c.G584C	p.S195T	CCACCAGCCCTCA		144	31	0.22	139	0	0				5	0	0				C	173839947	G	C	173839947	3	2	31	1	0	0	0	0	1	0	0	0	17596	971	34	5	586	5	ZBTB37	1	173839947	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	13938284	173839947	75410674	7	2101											
NMNAT2	23057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	183259297	183259297	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggtgttccaacacgctgCaggtcgtctgccaggtgtcc	14	12	1	0	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_015039	exon4	c.G287A	p.C96Y	ACGCTGCAGGTCG		139	26	0.19	138	0	0				14	6	0.43				T	183259297	C	T	183259297	3	4	31	1	0	0	0	0	1	0	0	0	10545	710	25	2	668	2	NMNAT2	1	183259297	Missense_Mutation	SNP	C	TCGA-2G-AAGJ-01A-11D-A42Y-10	9419350	183259297	65991324	8	2102											
FNDC4	64838	mdanderson.org	37	chr2	27717514	27717514	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatgtccccacggagtccGctggggggggaactgtggca	17	12	0	0	rs372961149	alternate_allele	TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_022823	exon2	c.C33A	p.S11R	GAGTCCGCTGGGG		83	4	0.05	70	0	0				62	0	0				T	27717514	G	T	27717514	3	4	31	1	0	0	0	0	1	0	0	0	6003	1078	38	1	695	1	FNDC4	2	27717514	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10		27717514	215481859	9	2103											
ACMSD	130013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	135630212	135630212	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taacagatgtcataggaaagGtaagcccagtctgccacttg	10	9	2	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_138326	exon8	c.849+1G>T	.	GGAAAGGTAAGCC		140	28	0.2	94	0	0				0	0					T	135630212	G	T	135630212	5	4	31	1	0	0	0	0	0	0	1	0	144	1275	44	3	880	3	ACMSD	2	135630212	Splice_Site	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	107912698	135630212	107569161	10	2104											
CHPF	79586	mdanderson.org	37	chr2	220406810	220406810	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagccggtgccccagcgtgCggttcacggccacgcccagc	13	19	1	0	rs369325931	alternate_allele	TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_024536	exon2	c.G416A	p.R139H	AGCGTGCGGTTCA		13	2	0.15	20	0	0				185	0	0				T	220406810	C	T	220406810	3	4	31	1	0	0	0	0	1	0	0	0	3390	768	27	1	1923	1	CHPF	2	220406810	Missense_Mutation	SNP	C	TCGA-2G-AAGJ-01A-11D-A42Y-10	84776598	220406810	22792563	11	2105											
ALPP	250	mdanderson.org	37	chr2	233246466	233246466	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgttgcttcctctgctggcCgggaccctgctgctgctgga	14	14	1	0	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001632	exon11	c.C1569A	p.A523A	GCTGGCCGGGACC		19	3	0.16	29	1	0.0344827586				0	0					A	233246466	C	A	233246466	2	1	31	1	0	0	0	0	0	0	0	1	544	639	23	1		1	ALPP	2	233246466	Silent	SNP	C	TCGA-2G-AAGJ-01A-11D-A42Y-10	12839656	233246466	9952907	12	2106											
ALPI	248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	233321406	233321406	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catacctggctctgtccaagGtaagggctgggccacctcag	12	13	2	0	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001631	exon3	c.300+1G>A	.	TCCAAGGTAAGGG		89	17	0.19	110	0	0				0	0					A	233321406	G	A	233321406	5	1	31	1	0	0	0	0	0	0	1	0	539	1275	44	3	311	3	ALPI	2	233321406	Splice_Site	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	74940	233321406	9877967	13	2107											
ITPR1	3708	mdanderson.org	37	chr3	4718333	4718333	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gatctattcatggcgtgggaGagctgatgacccaggtggtg	16	7	2	3	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001099952	exon24	c.G2788T	p.E930X	GTGGGAGAGCTGA		34	3	0.09	78	0	0				2	0	0				T	4718333	G	T	4718333	4	4	31	1	0	0	0	0	0	1	0	0	7963	943	33	3	2901	3	ITPR1	3	4718333	Nonsense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10		4718333	193304097	14	2108											
EDEM1	0	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	5229493	5229493	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcggcgcccgcgcgaccatGcaatggcgagcgctcgtcct	14	17	0	0	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	EDEM1,NS,carcinoma,+2,1	EDEM1	NM_014674	exon1	c.G3T	p.M1I	GACCATGCAATGG		52	5	0.1	73	0	0		45	1	5	0	0				T	5229493	G	T	5229493	3	4	31	1	0	0	0	0	1	0	0	0	4937	1319	46	2	5	2	EDEM1	3	5229493	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	511160	5229493	192792937	15	2109											
PLXNB1	5364	mdanderson.org	37	chr3	48461313	48461313	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcactgctgctacctctgaCggtgacagcggggaggccaa	15	12	1	2	rs2362450	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	PLXNB1,colon,carcinoma,-2,1	PLXNB1	NM_001130082	exon11	c.G2382A	p.P794P	CTCTGACGGTGAC		91	3	0.03	96	0	0		-2	1	17	0	0				T	48461313	C	T	48461313	2	4	31	1	0	0	0	0	0	0	0	1	12170	523	19	1		1	PLXNB1	3	48461313	Silent	SNP	C	TCGA-2G-AAGJ-01A-11D-A42Y-10	43231820	48461313	149561117	16	2110											
TMPRSS7	344805	broad.mit.edu	37	chr3	111799770	111799770	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtgtagggagattcgGgtggacctttatcttgtcga	15	5	1	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	TMPRSS7	NM_001042575	exon16	c.G1993T	p.G665C	GATTCGGGTGGAC		241	7	0.03	235	0	0		126		0	0					T	111799770	G	T	111799770	3	4	31	1	0	0	0	0	1	0	0	0	16311	1232	43	3	2051	3	TMPRSS7	3	111799770	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	63338457	111799770	86222660	17	2111											
SI	6476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	164709984	164709984	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtatggtagtcaaaccacCgagcattggggacgtaggca	13	9	1	0	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001041	exon43	c.G4964T	p.R1655L	AACCACCGAGCAT		259	32	0.12	184	0	0				0	0					A	164709984	C	A	164709984	3	1	31	1	0	0	0	0	1	0	0	0	14351	652	23	1	543	1	SI	3	164709984	Missense_Mutation	SNP	C	TCGA-2G-AAGJ-01A-11D-A42Y-10	52910214	164709984	33312446	18	2112											
ADD1	118	broad.mit.edu	37	chr4	2895781	2895781	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaacacttcctcattgtcccTtttgggcttctttacagtga	7	11	2	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	ADD1	NM_014190	exon5	c.T552C	p.P184P	TGTCCCTTTTGGG		175	3	0.02	172	0	0		56		86	0	0				C	2895781	T	C	2895781	2	2	31	1	0	0	0	0	0	0	0	1	303	1596	56	4		4	ADD1	4	2895781	Silent	SNP	T	TCGA-2G-AAGJ-01A-11D-A42Y-10		2895781	188258495	19	2113											
BST1	683	mdanderson.org	37	chr4	15704856	15704856	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgctggcggcgggcggggCgcgcgcgcggtggcgcgggg	26	12	0	0	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_004334	exon1	c.C89T	p.A30V	GCGGGGCGCGCGC		20	2	0.1	28	0	0				3	0	0				T	15704856	C	T	15704856	3	4	31	1	0	0	0	0	1	0	0	0	1535	768	27	1	91	1	BST1	4	15704856	Missense_Mutation	SNP	C	TCGA-2G-AAGJ-01A-11D-A42Y-10	12809075	15704856	175449420	20	2114											
LCORL	254251	mdanderson.org	37	chr4	18023327	18023327	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagcggcggcggcggcggcGgcagcagcggcggcggcagc	23	13	0	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_153686	exon1	c.C48T	p.A16A	GGCGGCGGCAGCA		69	4	0.06	87	0	0				0	0					A	18023327	G	A	18023327	2	1	31	1	0	0	0	0	0	0	0	1	8728	1103	39	1		1	LCORL	4	18023327	Silent	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	2318471	18023327	173130949	21	2115											
GYPB	2994	broad.mit.edu	37	chr4	144922392	144922392	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaagaagaggttgaagtgtGcattgccacctcagtggtac	13	7	1	4	rs201949116	bycluster	TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	GYPB	NM_002100	exon2	c.C82T	p.H28Y	AAGTGTGCATTGC		483	6	0.01	497	0	0		17		0	0					A	144922392	G	A	144922392	3	1	31	1	0	0	0	0	1	0	0	0	6949	1319	46	2	209	2	GYPB	4	144922392	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	126899065	144922392	46231884	22	2116											
C4orf51	646603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	146617775	146617775	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ctggtacccaagagactacaGatatcaaaggtaagtgcaac	9	9	1	2	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001080531	exon2	c.G298C	p.D100H	ACTACAGATATCA		81	7	0.09	92	0	0				41	40	0.98				C	146617775	G	C	146617775	3	2	31	1	0	0	0	0	1	0	0	0	2292	942	33	5	304	5	C4orf51	4	146617775	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	1695383	146617775	44536501	23	2117											
FCHO2	115548	broad.mit.edu	37	chr5	72286323	72286323	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaacatttgcaccagtatgGgatgtattcaaaacatctac	7	8	2	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	FCHO2	NM_138782	exon4	c.G219T	p.W73C	AGTATGGGATGTA		272	5	0.02	197	0	0		96		6	0	0				T	72286323	G	T	72286323	3	4	31	1	0	0	0	0	1	0	0	0	5820	1241	43	3	233	3	FCHO2	5	72286323	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10		72286323	108628937	24	2118											
IRF4	3662	broad.mit.edu	37	chr6	401642	401642	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tggtcctctggatggcccccGacgggctctatgcgaaaaga	13	12	2	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	IRF4	NM_002460	exon7	c.G964A	p.D322N	GCCCCCGACGGGC		127	4	0.03	124	0	0		65		4	0	0				A	401642	G	A	401642	3	1	31	1	0	0	0	0	1	0	0	0	7875	1058	37	1	986	1	IRF4	6	401642	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10		401642	170713425	25	2119											
PBX2	5089	broad.mit.edu	37	chr6	32156160	32156160	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggctgcagcggctgcagcTgctgctgctgagccgccccc	15	16	0	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	PBX2	NM_002586	exon3	c.A417T	p.A139A	TGCAGCTGCTGCT		77	4	0.05	75	0	0		29		120	0	0				A	32156160	T	A	32156160	2	1	31	1	0	0	0	0	0	0	0	1	11539	1567	55	5		5	PBX2	6	32156160	Silent	SNP	T	TCGA-2G-AAGJ-01A-11D-A42Y-10	31754518	32156160	138958907	26	2120											
IBTK	25998	broad.mit.edu	37	chr6	82924303	82924303	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctaccacaaagagatgGcaccctgcagaatcttcatc	6	13	3	2	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	IBTK	NM_015525	exon12	c.C1845A	p.C615X	GAGATGGCACCCT		168	4	0.02	125	0	0		128		24	0	0				T	82924303	G	T	82924303	4	4	31	1	0	0	0	0	0	1	0	0	7519	1195	42	2	2288	2	IBTK	6	82924303	Nonsense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	50768143	82924303	88190764	27	2121											
MAP7	9053	broad.mit.edu;mdanderson.org	37	chr6	136732800	136732800	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acgtcgctcccgggccagccGctgccggtcatcaacacgta	11	17	2	0	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	MAP7	NM_001198611	exon3	c.C268T	p.R90W	CCAGCCGCTGCCG		69	4	0.06	83	0	0		63		55	0	0				A	136732800	G	A	136732800	3	1	31	1	0	0	0	0	1	0	0	0	9315	1086	38	1	2111	1	MAP7	6	136732800	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	53808497	136732800	34382267	28	2122											
ARID1B	57492	broad.mit.edu;mdanderson.org	37	chr6	157100005	157100005	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcggcggcggcggcggCggaggaggaggaggcagcgg	27	9	0	0	rs184815562	bycluster;by1000genomes	TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	ARID1B	NM_017519	exon1	c.C942A	p.G314G	CGGCGGCGGAGGA		51	4	0.08	39	0	0		320		0	0					A	157100005	C	A	157100005	2	1	31	1	0	0	0	0	0	0	0	1	911	755	27	1		1	ARID1B	6	157100005	Silent	SNP	C	TCGA-2G-AAGJ-01A-11D-A42Y-10	20367205	157100005	14015062	29	2123											
CALD1	800	broad.mit.edu	37	chr7	134620437	134620437	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taccattcttgaaaataaaaAgggagaagagaagggaacta	10	4	1	3	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	CALD1	NM_033138	exon6	c.1309-2A>G	.	ATAAAAAGGGAGA		163	4	0.02	143	0	0		150		4	0	0				G	134620437	A	G	134620437	5	3	31	1	0	0	0	0	0	0	1	0	2599	86	3	4	1378	4	CALD1	7	134620437	Splice_Site	SNP	A	TCGA-2G-AAGJ-01A-11D-A42Y-10		134620437	24518226	30	2124											
ZNF786	136051	mdanderson.org	37	chr7	148768896	148768896	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccttctctccaagaggccGgcccctcccggctgtgctgg	13	17	1	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_152411	exon4	c.C968A	p.P323Q	GAGGCCGGCCCCT		19	2	0.11	16	0	0				29	0	0				T	148768896	G	T	148768896	3	4	31	1	0	0	0	0	1	0	0	0	18206	1116	39	1	1384	1	ZNF786	7	148768896	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	14148459	148768896	10369767	31	2125											
RHEB	6009	broad.mit.edu	37	chr7	151188048	151188048	+	Nonsense_Mutation	SNP	G	G	C													ctgttttctatggttggatcGtaggagtccacaaattggcc					novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	RHEB,NS,carcinoma,-2,3	RHEB	NM_005614	exon2	c.C105G	p.Y35X	TGGATCGTAGGAG		95	4	0.04	103	0	0		30	3	299	1	0				C	151188048	G	C	151188048	4	2	31	1	0	0	0	0	0	1	0	0	13377	1140	40	5	477	5	RHEB	7	151188048	Nonsense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	2419152	151188048	7950615	32	2126	5	2									
RHEB	6009	hgsc.bcm.edu;broad.mit.edu	37	chr7	151188050	151188050	+	Missense_Mutation	SNP	A	A	G													gttttctatggttggatcgtAggagtccacaaattggcctt					novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	RHEB,NS,carcinoma,0,3	RHEB	NM_005614	exon2	c.T103C	p.Y35H	GATCGTAGGAGTC		93	4	0.04	98	0	0		0	3	299	2	0.01				G	151188050	A	G	151188050	3	3	31	1	0	0	0	0	1	0	0	0	13377	420	15	4	479	4	RHEB	7	151188050	Missense_Mutation	SNP	A	TCGA-2G-AAGJ-01A-11D-A42Y-10	2	151188050	7950613	33	2127	5	2									
DLC1	10395	broad.mit.edu;bcgsc.ca	37	chr8	13357185	13357185	+	Frame_Shift_Del	DEL	C	C	-													tgttggcctgatgttttctgCccttgggtatttaaaacctg					novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	DLC1	NM_182643	exon2	c.396delG	p.G132fs	TTTCTGCCCTTGG		125	19	0.15	176	0	0		411		2	0	0				-	13357185	C	-	13357185	7	5	31	1	0	1	0	1	0	0	0	0	4578	726	26	0	4343	0	DLC1	8	13357185	Frame_Shift_Del	DEL	C	TCGA-2G-AAGJ-01A-11D-A42Y-10		13357185	133006837	34	2128											
PCMTD1	115294	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr8	52733191	52733191	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctttgaggaatccccttgGcctgcatctcatcatttatg	7	13	2	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	PCMTD1,NS,carcinoma,+1,1	PCMTD1	NM_052937	exon6	c.C794T	p.A265V	CCCTTGGCCTGCA		137	7	0.05	143	0	0		1	1	16	0	0				A	52733191	G	A	52733191	3	1	31	1	0	0	0	0	1	0	0	0	11632	1203	42	2	283	2	PCMTD1	8	52733191	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	39376006	52733191	93630831	35	2129											
ZFPM2	23414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	106813720	106813720	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agcttttcttacacaaaaatAaagtctgagccctctagccc	5	12	3	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_012082	exon8	c.A1410T	p.I470I	AAAAATAAAGTCT		87	20	0.23	62	0	0				8	2	0.25				T	106813720	A	T	106813720	2	4	31	1	0	0	0	0	0	0	0	1	17715	352	13	5		5	ZFPM2	8	106813720	Silent	SNP	A	TCGA-2G-AAGJ-01A-11D-A42Y-10	54080529	106813720	39550302	36	2130											
ARC	23237	broad.mit.edu	37	chr8	143694937	143694937	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agccagtactcctcagagccGcccacctgccgcaagtactc	8	18	1	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	ARC,caecum,carcinoma,0,1	ARC	NM_015193	exon1	c.C696T	p.G232G	AGAGCCGCCCACC		53	4	0.08	68	1	0.0147058824		34	1	1	0	0				A	143694937	G	A	143694937	2	1	31	1	0	0	0	0	0	0	0	1	838	1074	38	1		1	ARC	8	143694937	Silent	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	36881217	143694937	2669085	37	2131											
CDKN2B	1030	mdanderson.org	37	chr9	22006138	22006138	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgtccaggaagccctcccGggcagcatcatgcaccggtc	12	16	1	0	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_004936	exon2	c.C265A	p.R89R	CCTCCCGGGCAGC		27	3	0.11	25	0	0				3	0	0				T	22006138	G	T	22006138	2	4	31	1	0	0	0	0	0	0	0	1	3186	1115	39	1		1	CDKN2B	9	22006138	Silent	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10		22006138	119207293	38	2132											
WNK2	65268	mdanderson.org	37	chr9	95947607	95947607	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccggaccccatcgcagccgcTgtcgaaaccgcgcctgcccc	10	21	0	0	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_006648	exon1	c.T396A	p.A132A	AGCCGCTGTCGAA		26	3	0.12	10	0	0				14	0	0				A	95947607	T	A	95947607	2	1	31	1	0	0	0	0	0	0	0	1	17437	1567	55	5		5	WNK2	9	95947607	Silent	SNP	T	TCGA-2G-AAGJ-01A-11D-A42Y-10	73941469	95947607	45265824	39	2133											
CYP17A1	1586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr10	104593813	104593813	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgtaattttcaagtatttTattcagcagatcatttcgta	5	6	3	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_000102	exon4	c.A733T	p.K245X	GTATTTTATTCAG		154	35	0.23	94	0	0				1	1	1				A	104593813	T	A	104593813	4	1	31	1	0	0	0	0	0	1	0	0	4170	1763	61	5	813	5	CYP17A1	10	104593813	Nonsense_Mutation	SNP	T	TCGA-2G-AAGJ-01A-11D-A42Y-10		104593813	30940934	40	2134											
LUZP2	338645	mdanderson.org	37	chr11	24998198	24998198	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caaaaatgaactggagaaagCagctcttgacagggtaagtc	11	7	1	3	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001009909	exon8	c.C584T	p.A195V	AGAAAGCAGCTCT		52	3	0.06	47	0	0				0	0					T	24998198	C	T	24998198	3	4	31	1	0	0	0	0	1	0	0	0	9131	710	25	2	614	2	LUZP2	11	24998198	Missense_Mutation	SNP	C	TCGA-2G-AAGJ-01A-11D-A42Y-10		24998198	110008318	41	2135											
OR5J2	282775	broad.mit.edu;ucsc.edu	37	chr11	55944605	55944605	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagactgtccttttgtaggcTaaatgctgtcagccacttct	9	10	2	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	OR5J2,right_upper_lobe,carcinoma,+1,1	OR5J2	NM_001005492	exon1	c.T512C	p.L171P	GTAGGCTAAATGC		141	19	0.13	153	2	0.0130718954		98	1	0	0					C	55944605	T	C	55944605	3	2	31	1	0	0	0	0	1	0	0	0	11211	1522	53	4	514	4	OR5J2	11	55944605	Missense_Mutation	SNP	T	TCGA-2G-AAGJ-01A-11D-A42Y-10	30946407	55944605	79061911	42	2136											
FADD	8772	mdanderson.org	37	chr11	70049843	70049843	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggccggggccgcgcctgGggaagaaggtgggcgcgggg	25	10	0	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_003824	exon1	c.G278T	p.G93V	CGCCTGGGGAAGA		16	2	0.13	17	0	0				53	0	0				T	70049843	G	T	70049843	3	4	31	1	0	0	0	0	1	0	0	0	5395	1232	43	3	280	3	FADD	11	70049843	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	14105238	70049843	64956673	43	2137											
ARHGEF17	9828	mdanderson.org	37	chr11	73073275	73073275	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcccgggctgcagcctcGctgccaccggtgaggcctgg	17	15	0	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_014786	exon13	c.G4685A	p.R1562H	AGCCTCGCTGCCA		20	2	0.1	19	0	0				8	0	0				A	73073275	G	A	73073275	3	1	31	1	0	0	0	0	1	0	0	0	897	1087	38	1	4735	1	ARHGEF17	11	73073275	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	3023432	73073275	61933241	44	2138											
WNK1	65125	broad.mit.edu	37	chr12	1017711	1017711	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catgacctcgaacctgggtgGctctgcccccatctctgcag	10	16	2	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	WNK1	NM_001184985	exon28	c.G7682T	p.G2561V	TGGGTGGCTCTGC		406	11	0.03	222	5	0.0225225225		403		258	0	0				T	1017711	G	T	1017711	3	4	31	1	0	0	0	0	1	0	0	0	17436	1203	42	2	8514	2	WNK1	12	1017711	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10		1017711	132834184	45	2139											
GPD1	2819	bcgsc.ca	37	chr12	50501424	50501424	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accaaggcggcagtgatccgGctgggactcatggagatgat	15	9	1	3	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	GPD1,NS,carcinoma,0,1	GPD1	NM_005276	exon6	c.G687A	p.R229R	GATCCGGCTGGGA		130	6	0.05	92	0	0		23	1	2	0	0				A	50501424	G	A	50501424	2	1	31	1	0	0	0	0	0	0	0	1	6643	1190	42	2		2	GPD1	12	50501424	Silent	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	49483713	50501424	83350471	46	2140											
MUCL1	118430	mdanderson.org	37	chr12	55250643	55250643	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctaccactgcaaccaccGctgcttctaccactgctcgt	5	19	1	0	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_058173	exon3	c.G190A	p.A64T	ACCACCGCTGCTT		85	4	0.05	70	0	0				1	0	0				A	55250643	G	A	55250643	3	1	31	1	0	0	0	0	1	0	0	0	10029	1087	38	1	200	1	MUCL1	12	55250643	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	4749219	55250643	78601252	47	2141											
ATP2B1	490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	90018056	90018056	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaataatgaagaacttcacAaagtattgtatataaattgg	6	5	1	2	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	ATP2B1_ENST00000359142,NS,carcinoma,-1,2	ATP2B1_ENST00000359142	NM_001001323	exon8	c.T1248C	p.F416F	CTTCACAAAGTAT		247	30	0.12	205	0	0		-1	2	18	6	0.33				G	90018056	A	G	90018056	2	3	31	1	0	0	0	0	0	0	0	1	1138	127	5	4		4	ATP2B1	12	90018056	Silent	SNP	A	TCGA-2G-AAGJ-01A-11D-A42Y-10	34767413	90018056	43833839	48	2142											
PWP1	11137	mdanderson.org	37	chr12	108105950	108105950	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgcaagaaattcatctattAgtggcccttttggcagcagg	11	8	2	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_007062	exon15	c.A1459T	p.S487C	TCTATTAGTGGCC		98	5	0.05	73	0	0				586	0	0				T	108105950	A	T	108105950	3	4	31	1	0	0	0	0	1	0	0	0	12894	420	15	5	1517	5	PWP1	12	108105950	Missense_Mutation	SNP	A	TCGA-2G-AAGJ-01A-11D-A42Y-10	18087894	108105950	25745945	49	2143											
CLIP1	6249	broad.mit.edu	37	chr12	122812693	122812694	+	Frame_Shift_Ins	INS	-	-	T													ctgacactggttgtggcttgINStttccattttcttttcctgc					novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	CLIP1	NM_001247997	exon17	c.3050_3051insA	p.T1017fs	TGGCTTGTTTCCA		233	8	0.03	157	0	0		126		200	0	0				T	122812694	-	T	122812693	7	5	31	1	0	1	1	0	0	0	0	0	3555	1377	48	0	1306	0	CLIP1	12	122812693	Frame_Shift_Ins	INS	-	TCGA-2G-AAGJ-01A-11D-A42Y-10	14706743	122812693	11039202	50	2144											
TTC7B	145567	mdanderson.org	37	chr14	91044550	91044550	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccggagctcagcaatctggCcgcgcatgtagaggacattg	13	12	2	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001010854	exon19	c.G2210A	p.G737D	ATCTGGCCGCGCA		125	5	0.04	143	0	0				50	0	0				T	91044550	C	T	91044550	3	4	31	1	0	0	0	0	1	0	0	0	16774	739	26	2	329	2	TTC7B	14	91044550	Missense_Mutation	SNP	C	TCGA-2G-AAGJ-01A-11D-A42Y-10		91044550	16304990	51	2145											
RBPMS2	348093	mdanderson.org	37	chr15	65043817	65043817	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaatgtccacagggaggccGctgacaaacagtgtccggac	12	11	0	1	rs372396252		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_194272	exon2	c.C108T	p.S36S	GAGGCCGCTGACA		48	4	0.08	45	0	0				160	0	0				A	65043817	G	A	65043817	2	1	31	1	0	0	0	0	0	0	0	1	13215	1078	38	1		1	RBPMS2	15	65043817	Silent	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10		65043817	37487575	52	2146											
IQGAP1	8826	mdanderson.org	37	chr15	91035814	91035814	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggtaccgacagaggagaaAggccgaactagtgaaactgc	14	8	0	3	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_003870	exon35	c.A4499G	p.K1500R	GGAGAAAGGCCGA		52	3	0.06	50	0	0				321	0	0				G	91035814	A	G	91035814	3	3	31	1	0	0	0	0	1	0	0	0	7857	72	3	4	4637	4	IQGAP1	15	91035814	Missense_Mutation	SNP	A	TCGA-2G-AAGJ-01A-11D-A42Y-10	25991997	91035814	11495578	53	2147											
TELO2	9894	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	1552339	1552339	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accacgtctgaggacatagaGcgctgggaggcagccctgcg	15	12	1	2	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_016111	exon13	c.G1587T	p.E529D	CATAGAGCGCTGG		56	9	0.16	74	0	0				130	38	0.29				T	1552339	G	T	1552339	3	4	31	1	0	0	0	0	1	0	0	0	15815	962	34	2	1633	2	TELO2	16	1552339	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10		1552339	88802414	54	2148											
PALB2	79728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	23614909	23614909	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aggagggcagtacactgaccGagaagtaagtcccaaatggc	13	9	0	2	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_024675	exon13	c.C3432T	p.L1144L	CTGACCGAGAAGT		106	8	0.08	134	0	0				151	38	0.25				A	23614909	G	A	23614909	2	1	31	1	0	0	0	0	0	0	0	1	11452	1045	37	1		1	PALB2	16	23614909	Silent	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	22062570	23614909	66739844	55	2149											
ZNF785	146540	mdanderson.org	37	chr16	30594139	30594139	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagggaagaataggtgaaGcggcggccgcagtcaggaca	18	7	1	2	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_152458	exon3	c.C960A	p.R320R	GGTGAAGCGGCGG		35	3	0.09	47	0	0				9	0	0				T	30594139	G	T	30594139	2	4	31	1	0	0	0	0	0	0	0	1	18205	958	34	2		2	ZNF785	16	30594139	Silent	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	6979230	30594139	59760614	56	2150											
GPR114	221188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	57600650	57600650	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaaccacctcacctactTtgctgttctcatggtatgta	6	13	2	0	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_153837	exon7	c.T686C	p.F229S	CCTACTTTGCTGT		27	6	0.22	33	0	0				14	2	0.14				C	57600650	T	C	57600650	3	2	31	1	0	0	0	0	1	0	0	0	6670	1841	64	4	708	4	GPR114	16	57600650	Missense_Mutation	SNP	T	TCGA-2G-AAGJ-01A-11D-A42Y-10	27006511	57600650	32754103	57	2151											
E2F4	1874	hgsc.bcm.edu	37	chr16	67229841	67229841	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcagcaacagtaAcagcagcagttcgtccggac	11	13	0	0	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001950	exon7	c.A965G	p.N322S	ACAGTAACAGCAG		129	7	0.05	104	0	0				358	12	0.03				G	67229841	A	G	67229841	3	3	31	1	0	0	0	0	1	0	0	0	4895	43	2	4	991	4	E2F4	16	67229841	Missense_Mutation	SNP	A	TCGA-2G-AAGJ-01A-11D-A42Y-10	9629191	67229841	23124912	58	2152											
CENPN	55839	mdanderson.org	37	chr16	81053827	81053827	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtactactcccagactccGtacgccttcacgtcctcctc	6	18	1	1	rs150065918		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	CENPN_ENST00000439957,colon,carcinoma,+1,2	CENPN_ENST00000439957	NM_018455	exon6	c.G477A	p.P159P	GACTCCGTACGCC		60	4	0.07	71	1	0.014084507		1	2	138	0	0				A	81053827	G	A	81053827	2	1	31	1	0	0	0	0	0	0	0	1	3260	1132	40	1		1	CENPN	16	81053827	Silent	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	13823986	81053827	9300926	59	2153											
FANCA	2175	mdanderson.org	37	chr16	89851354	89851354	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgcagccatggtagcctcGtgtgctcccaaaggaggcct	13	13	0	0	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_000135	exon15	c.C1378T	p.R460X	AGCCTCGTGTGCT		45	3	0.07	81	0	0				34	0	0				A	89851354	G	A	89851354	4	1	31	1	0	0	0	0	0	1	0	0	5694	1153	40	1	3105	1	FANCA	16	89851354	Nonsense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	8797527	89851354	503399	60	2154											
ZNF57	126295	broad.mit.edu	37	chr19	2918277	2918277	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttctaaaaccagtgagaGcacacactaaagagaaattc	6	9	2	2	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	ZNF57	NM_173480	exon4	c.G1658T	p.S553I	GTGAGAGCACACA		57	3	0.05	46	0	0		57		64	0	0				T	2918277	G	T	2918277	3	4	31	1	0	0	0	0	1	0	0	0	18057	971	34	2	1672	2	ZNF57	19	2918277	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10		2918277	56210706	61	2155											
ARHGEF18	23370	mdanderson.org	37	chr19	7505295	7505295	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccggccctgtccaggaatGtcggtatgacggtctctcag	13	13	2	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001130955	exon1	c.G469T	p.V157F	AGGAATGTCGGTA		20	2	0.1	35	0	0				32	0	0				T	7505295	G	T	7505295	3	4	31	1	0	0	0	0	1	0	0	0	898	1377	48	3	471	3	ARHGEF18	19	7505295	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	4587018	7505295	51623688	62	2156											
FBN3	84467	mdanderson.org	37	chr19	8212313	8212313	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caacagggccgaccaggccaGcaggagccgggccagggggc	18	14	0	0	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_032447	exon1	c.C52T	p.L18L	AGGCCAGCAGGAG		38	3	0.08	53	0	0				4	0	0				A	8212313	G	A	8212313	2	1	31	1	0	0	0	0	0	0	0	1	5736	962	34	2		2	FBN3	19	8212313	Silent	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	707018	8212313	50916670	63	2157											
CCDC159	126075	broad.mit.edu	37	chr19	11464523	11464523	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcactttgtgctcggggGcctgtcccaaggcctcgagc	13	15	1	0	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	CCDC159	NM_001080503	exon9	c.G745T	p.A249S	TCGGGGGCCTGTC		85	4	0.05	89	1	0.0112359551		35		27	0	0				T	11464523	G	T	11464523	3	4	31	1	0	0	0	0	1	0	0	0	2810	1203	42	2	779	2	CCDC159	19	11464523	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	3252210	11464523	47664460	64	2158											
ZNF681	148213	mdanderson.org	37	chr19	23926883	23926883	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tatgtgtagtaaggattgagGactggttaaaagctttgcca	12	4	0	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_138286	exon4	c.C1469A	p.S490Y	ATTGAGGACTGGT		21	3	0.14	30	0	0				56	0	0				T	23926883	G	T	23926883	3	4	31	1	0	0	0	0	1	0	0	0	18143	1174	41	3	472	3	ZNF681	19	23926883	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	12462360	23926883	35202100	65	2159											
IL4I1	259307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	50399126	50399126	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accagcccggccacaccagcGccaaccacaatcaccctctg	6	21	2	0	rs138779872	bycluster	TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_172374	exon5	c.C264T	p.G88G	ACCAGCGCCAACC		64	9	0.14	76	0	0	0			116	0	0				A	50399126	G	A	50399126	2	1	31	1	0	0	0	0	0	0	0	1	7740	1074	38	1		1	IL4I1	19	50399126	Silent	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	26472243	50399126	8729857	66	2160											
CDC25B	994	mdanderson.org	37	chr20	3777215	3777215	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggagcccgcgccaggctcgGctctcagtccagcaggcgtg	15	16	1	0	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_021873	exon1	c.G37T	p.A13S	GGCTCGGCTCTCA		18	3	0.17	10	0	0				22	0	0				T	3777215	G	T	3777215	3	4	31	1	0	0	0	0	1	0	0	0	3085	1203	42	2	39	2	CDC25B	20	3777215	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10		3777215	59248305	67	2161											
TMX4	56255	broad.mit.edu	37	chr20	8000252	8000252	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agctgcgggccgcagcgcccAcccgccatgttgggcgccga	15	17	0	0	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	TMX4	NM_021156	exon1	c.T9G	p.G3G	GCGCCCACCCGCC		41	21	0.51	40	17	0.425		39		6	0	0				C	8000252	A	C	8000252	2	2	31	1	0	0	0	0	0	0	0	1	16328	146	6	4		4	TMX4	20	8000252	Silent	SNP	A	TCGA-2G-AAGJ-01A-11D-A42Y-10	4223037	8000252	55025268	68	2162											
RRBP1	6238	bcgsc.ca	37	chr20	17639790	17639790	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcttgccctggttctgggCcccctcggccttcttgccct	9	18	3	0	rs111560928	bycluster	TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	RRBP1	.	.	.	.	TCTGGGCCCCCTC		206	13	0.06	234	8	0.0341880342		157		1232	196	0.16				T	17639790	C	T	17639790	3	4	31	1	0	0	0	0	1	0	0	0	13729	754	26	2		2	RRBP1	20	17639790	Missense_Mutation	SNP	C	TCGA-2G-AAGJ-01A-11D-A42Y-10	9639538	17639790	45385730	69	2163											
OGFR	11054	mdanderson.org	37	chr20	61436316	61436316	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggccgccggcgcgagggaCgcggacgcaggggacgagga	22	11	0	0	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_007346	exon1	c.C105T	p.D35D	GAGGGACGCGGAC		15	2	0.13	20	0	0				118	0	0				T	61436316	C	T	61436316	2	4	31	1	0	0	0	0	0	0	0	1	10890	535	19	1		1	OGFR	20	61436316	Silent	SNP	C	TCGA-2G-AAGJ-01A-11D-A42Y-10	43796526	61436316	1589204	70	2164											
HMGN1	3150	broad.mit.edu	37	chr21	40720231	40720231	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcttaccttcgctgctgccTttttcggcttcgcttccact	8	15	0	0	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	HMGN1	NM_004965	exon4	c.A113G	p.K38R	GCTGCCTTTTTCG		204	5	0.02	136	0	0		8		2084	0	0				C	40720231	T	C	40720231	3	2	31	1	0	0	0	0	1	0	0	0	7274	1609	56	4	201	4	HMGN1	21	40720231	Missense_Mutation	SNP	T	TCGA-2G-AAGJ-01A-11D-A42Y-10		40720231	7409664	71	2165											
CECR2	27443	broad.mit.edu	37	chr22	17978523	17978523	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	attggtatttctatggaacaCgaatgtacaaagaggacccg	10	7	1	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	CECR2	.	.	.	.	GGAACACGAATGT		150	5	0.03	184	0	0		233		46	0	0				T	17978523	C	T	17978523	4	4	31	1	0	0	0	0	0	1	0	0	3228	528	19	1	373	1	CECR2	22	17978523	Nonsense_Mutation	SNP	C	TCGA-2G-AAGJ-01A-11D-A42Y-10		17978523	33326043	72	2166											
MYO18B	84700	broad.mit.edu	37	chr22	26224747	26224747	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcttctctccctagatccTtttcctcccaccatctctcc	1	20	3	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	MYO18B	NM_032608	exon15	c.T2791C	p.F931L	AGATCCTTTTCCT		87	4	0.05	68	2	0.0294117647		322		0	0					C	26224747	T	C	26224747	3	2	31	1	0	0	0	0	1	0	0	0	10113	1609	56	4	2845	4	MYO18B	22	26224747	Missense_Mutation	SNP	T	TCGA-2G-AAGJ-01A-11D-A42Y-10	8246224	26224747	25079819	73	2167											
NDP	4693	broad.mit.edu	37	chrX	43817791	43817791	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tcatgcagcgtcgagggtccGagtccattatgaatgagctg	13	9	1	2	rs144031424	bycluster;alternate_allele	TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	NDP	NM_000266	exon2	c.C101G	p.S34W	GGGTCCGAGTCCA		107	4	0.04	113	0	0		12		1	0	0				C	43817791	G	C	43817791	3	2	31	1	0	0	0	0	1	0	0	0	10296	1059	37	5	308	5	NDP	23	43817791	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10		43817791	111452769	74	2168											
EBP	10682	broad.mit.edu	37	chrX	48385673	48385673	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagcttgtggtctctgtgGgtaaggaaagggcactagag	15	6	1	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	EBP	NM_006579	exon4	c.G469T	p.G157C	TCTGTGGGTAAGG		71	3	0.04	49	0	0		30		359	0	0				T	48385673	G	T	48385673	5	4	31	1	0	0	0	0	0	0	1	0	4912	1246	43	3	479	3	EBP	23	48385673	Splice_Site	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	4567882	48385673	106884887	75	2169											
MAGED1	9500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	51637753	51637753	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgtagagcagtctgtcacCccctcccccagcctcctgcc	7	20	2	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_001005333	exon3	c.C76A	p.P26T	TGTCACCCCCTCC		119	39	0.33	107	0	0				3	3	1				A	51637753	C	A	51637753	3	1	31	1	0	0	0	0	1	0	0	0	9232	623	22	3	82	3	MAGED1	23	51637753	Missense_Mutation	SNP	C	TCGA-2G-AAGJ-01A-11D-A42Y-10	3252080	51637753	103632807	76	2170											
KLF8	11279	bcgsc.ca	37	chrX	56295891	56295891	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	caattgagagtggatcctcaGccttgcagagtctgcaggga	13	9	2	2	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	KLF8	NM_001159296	exon5	c.G727C	p.A243P	TCCTCAGCCTTGC		76	4	0.05	59	0	0		38		48	0	0				C	56295891	G	C	56295891	3	2	31	1	0	0	0	0	1	0	0	0	8394	971	34	5	741	5	KLF8	23	56295891	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	4658138	56295891	98974669	77	2171											
BRWD3	254065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	79959062	79959062	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaaaccattcttcattagGctcacctgctatagaaacca	6	12	3	1	novel		TCGA-2G-AAGJ-01A-11D-A42Y-10	TCGA-2G-AAGJ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33a1d123-4f2c-4210-bc91-4ad16e31105d	aeaad8c4-5cdd-4ffd-bd16-b8d99b390608	.	.	NM_153252	exon24	c.C2752A	p.P918T	CATTAGGCTCACC		486	134	0.28	361	0	0				75	34	0.45				T	79959062	G	T	79959062	3	4	31	1	0	0	0	0	1	0	0	0	1528	1203	42	2	2728	2	BRWD3	23	79959062	Missense_Mutation	SNP	G	TCGA-2G-AAGJ-01A-11D-A42Y-10	23663171	79959062	75311498	78	2172											
DFFB	1677	mdanderson.org	37	chr1	3775322	3775322	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgcctgtacgaggatgGcacggagctgacggaagatt	16	8	0	2	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_004402	exon2	c.G155T	p.G52V	AGGATGGCACGGA		122	5	0.04	85	0	0				10	0	0				T	3775322	G	T	3775322	3	4	32	1	0	0	0	0	1	0	0	0	4481	1203	42	2	161	2	DFFB	1	3775322	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10		3775322	245475299	1	2173											
HORMAD1	84072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	150675839	150675839	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgctttcagacatatcaaGttcagatgttttattgacta	6	6	3	3	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_032132	exon13	c.C979T	p.L327F	TATCAAGTTCAGA		107	29	0.27	97	0	0				14	8	0.57				A	150675839	G	A	150675839	3	1	32	1	0	0	0	0	1	0	0	0	7326	1029	36	3	217	3	HORMAD1	1	150675839	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	146900517	150675839	98574782	2	2174											
DYSF	8291	broad.mit.edu	37	chr2	71795194	71795194	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtttgctgaggggaagctGtctgtctttgctgaaaccgt	13	8	2	2	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	DYSF	NM_001130982	exon26	c.G2721T	p.L907L	GAAGCTGTCTGTC		210	5	0.02	192	0	0		536		142	0	0				T	71795194	G	T	71795194	2	4	32	1	0	0	0	0	0	0	0	1	4885	1364	48	3		3	DYSF	2	71795194	Silent	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10		71795194	171404179	3	2175											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179499171	179499171	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcatcatcaaattgagaatCattaataacaagaatatgtt	4	5	4	2	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_001267550	exon230	c.G42337T	p.D14113Y	GAGAATCATTAAT		109	22	0.2	78	0	0				0	0					A	179499171	C	A	179499171	3	1	32	1	0	0	0	0	1	0	0	0	16796	826	29	3	65888	3	TTN	2	179499171	Missense_Mutation	SNP	C	TCGA-2G-AAGK-01A-11D-A42Y-10	107703977	179499171	63700202	4	2176											
ESPNL	339768	mdanderson.org	37	chr2	239040289	239040289	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccagcagggcagcttcaaCggtgaggacatctgcggcta	13	12	2	1	rs182590742	bycluster;by1000genomes	TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	ESPNL,NS,carcinoma,+2,1	ESPNL	NM_194312	exon9	c.C2934T	p.N978N	CTTCAACGGTGAG		99	5	0.05	100	0	0	0	2	1	0	0					T	239040289	C	T	239040289	2	4	32	1	0	0	0	0	0	0	0	1	5283	535	19	1		1	ESPNL	2	239040289	Silent	SNP	C	TCGA-2G-AAGK-01A-11D-A42Y-10	59541118	239040289	4159084	5	2177											
FANCD2	2177	mdanderson.org	37	chr3	10089633	10089633	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgttcatccattctgtcGctggctcagagtttgcttca	9	10	4	1	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_001018115	exon16	c.G1311T	p.S437S	TCTGTCGCTGGCT		93	4	0.04	81	0	0				16	0	0				T	10089633	G	T	10089633	2	4	32	1	0	0	0	0	0	0	0	1	5697	1074	38	1		1	FANCD2	3	10089633	Silent	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10		10089633	187932797	6	2178											
IQSEC1	9922	mdanderson.org	37	chr3	12950917	12950917	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggacagacgaggtgagccGgatgccattggggtagtctg	19	7	1	2	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	IQSEC1,colon,carcinoma,0,1	IQSEC1	NM_014869	exon11	c.C2476T	p.R826W	TGAGCCGGATGCC		74	4	0.05	60	0	0		0	1	39	0	0				A	12950917	G	A	12950917	3	1	32	1	0	0	0	0	1	0	0	0	7860	1115	39	1	976	1	IQSEC1	3	12950917	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	2861284	12950917	185071513	7	2179											
EIF4G1	1981	broad.mit.edu	37	chr3	184040514	184040514	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacagaagtatgaatataaGtcaggtatgctgaagaaagg	12	3	1	4	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	EIF4G1	NM_001194946	exon13	c.G1812T	p.K604N	ATATAAGTCAGGT		193	4	0.02	148	0	0		151		855	0	0				T	184040514	G	T	184040514	3	4	32	1	0	0	0	0	1	0	0	0	5064	1020	36	3	1829	3	EIF4G1	3	184040514	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	171089597	184040514	13981916	8	2180											
LOX	4015	mdanderson.org	37	chr5	121413599	121413599	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgcgcgggggctgctgttGgccggcggcgggaggggcgc	23	12	0	0	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_002317	exon1	c.C82A	p.Q28K	GCTGTTGGCCGGC		36	3	0.08	30	0	0				3	0	0				T	121413599	G	T	121413599	3	4	32	1	0	0	0	0	1	0	0	0	8942	1357	47	3	1199	3	LOX	5	121413599	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10		121413599	59501661	9	2181											
JAKMIP2	9832	broad.mit.edu	37	chr5	147051343	147051343	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagtgcctcgggcttctcGcccttatttcgccctttctt	8	14	2	1	rs180692323	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	JAKMIP2	NM_001270941	exon2	c.C27A	p.G9G	CTTCTCGCCCTTA		114	4	0.04	128	0	0		154		2	0	0				T	147051343	G	T	147051343	2	4	32	1	0	0	0	0	0	0	0	1	7984	1074	38	1		1	JAKMIP2	5	147051343	Silent	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	25637744	147051343	33863917	10	2182											
RGS14	10636	broad.mit.edu	37	chr5	176798511	176798511	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actcaggataaggccacccaTccccctccagcgtcccccag	7	20	1	0	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	RGS14,NS,adenocarcinoma,0,1	RGS14	NM_006480	exon14	c.T1419C	p.H473H	CACCCATCCCCCT		165	4	0.02	157	0	0		34	1	97	1	0.01				C	176798511	T	C	176798511	2	2	32	1	0	0	0	0	0	0	0	1	13346	1432	50	4		4	RGS14	5	176798511	Silent	SNP	T	TCGA-2G-AAGK-01A-11D-A42Y-10	29747168	176798511	4116749	11	2183											
GMPR	2766	mdanderson.org	37	chr6	16290845	16290845	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agcacgcaggaggagttgctGagtacaggtgaggaggtgac	18	6	0	3	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_006877	exon8	c.G850T	p.E284X	GTTGCTGAGTACA		43	3	0.07	64	0	0				132	0	0				T	16290845	G	T	16290845	4	4	32	1	0	0	0	0	0	1	0	0	6537	1291	45	3	880	3	GMPR	6	16290845	Nonsense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10		16290845	154824222	12	2184											
ZNF391	346157	mdanderson.org	37	chr6	27369205	27369205	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaactctgatcagacatcaGcaccttcatactaaagagta	5	11	5	3	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_001076781	exon3	c.G1056C	p.Q352H	ACATCAGCACCTT		22	2	0.09	33	0	0				9	0	0				C	27369205	G	C	27369205	3	2	32	1	0	0	0	0	1	0	0	0	17935	962	34	5	1058	5	ZNF391	6	27369205	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	11078360	27369205	143745862	13	2185											
DDR1	780	mdanderson.org	37	chr6	30865223	30865223	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caaacatcattcggctgctgGgcgtgtgtgtgcaggacgac	14	10	1	0	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	DDR1_ENST00000376575,NS,adenocarcinoma,-2,3	DDR1_ENST00000376575	NM_013994	exon14	c.G2083T	p.G695C	CTGCTGGGCGTGT		57	3	0.05	65	0	0		-2	3	129	0	0				T	30865223	G	T	30865223	3	4	32	1	0	0	0	0	1	0	0	0	4359	1232	43	3	2137	3	DDR1	6	30865223	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	3496018	30865223	140249844	14	2186											
FOXD4	2298	mdanderson.org	37	chr9	117487	117487	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtagagggaaggggtggggCaggtgggctcccggggtcgg	25	6	0	1	rs201596201	byfrequency	TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_207305	exon1	c.G633A	p.L211L	GTGGGGCAGGTGG		28	7	0.25	30	1	0.0333333333	0.004			1	1	1				T	117487	C	T	117487	2	4	32	1	0	0	0	0	0	0	0	1	6031	697	25	2		2	FOXD4	9	117487	Silent	SNP	C	TCGA-2G-AAGK-01A-11D-A42Y-10		117487	141095944	15	2187											
COL15A1	1306	broad.mit.edu	37	chr9	101797339	101797339	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acctggacccccggggaaaaAgggacaagctggccctcctg	13	14	0	0	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	COL15A1	NM_001855	exon18	c.A2123G	p.K708R	GGAAAAAGGGACA		124	4	0.03	114	0	0		211		43	0	0				G	101797339	A	G	101797339	3	3	32	1	0	0	0	0	1	0	0	0	3695	72	3	4	2193	4	COL15A1	9	101797339	Missense_Mutation	SNP	A	TCGA-2G-AAGK-01A-11D-A42Y-10	101679852	101797339	39416092	16	2188											
CRB2	286204	mdanderson.org	37	chr9	126129887	126129887	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggaggtggacgagtgtgccTcacggccatgcctcaacgga	15	11	2	0	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_173689	exon6	c.T976C	p.S326P	TGTGCCTCACGGC		38	3	0.08	44	0	0				3	0	0				C	126129887	T	C	126129887	3	2	32	1	0	0	0	0	1	0	0	0	3872	1551	54	4	998	4	CRB2	9	126129887	Missense_Mutation	SNP	T	TCGA-2G-AAGK-01A-11D-A42Y-10	24332548	126129887	15083544	17	2189											
ENG	2022	mdanderson.org	37	chr9	130587145	130587145	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgaaggatgccacaatgcTggcattgagcatccgggcct	12	12	0	1	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_000118	exon7	c.A925G	p.S309G	CAATGCTGGCATT		56	3	0.05	61	0	0				96	1	0.01				C	130587145	T	C	130587145	3	2	32	1	0	0	0	0	1	0	0	0	5145	1580	55	4	1113	4	ENG	9	130587145	Missense_Mutation	SNP	T	TCGA-2G-AAGK-01A-11D-A42Y-10	4457258	130587145	10626286	18	2190											
COL5A1	1289	mdanderson.org	37	chr9	137620596	137620596	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgaagacctagggaaggaGcccacccccagcaagaagcc	11	16	0	2	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_000093	exon6	c.G867T	p.E289D	GAAGGAGCCCACC		41	3	0.07	52	0	0				40	0	0				T	137620596	G	T	137620596	3	4	32	1	0	0	0	0	1	0	0	0	3719	962	34	2	889	2	COL5A1	9	137620596	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	7033451	137620596	3592835	19	2191											
RET	5979	mdanderson.org	37	chr10	43604576	43604576	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccagggcccaggagcgggCgtcctcttgctccacttcaa	11	15	2	0	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	RET_ENST00000340058,NS,carcinoma,0,2	RET_ENST00000340058	NM_020630	exon6	c.C1161T	p.G387G	AGCGGGCGTCCTC		45	3	0.07	61	0	0		0	2	2	0	0				T	43604576	C	T	43604576	2	4	32	1	0	0	0	0	0	0	0	1	13286	755	27	1		1	RET	10	43604576	Silent	SNP	C	TCGA-2G-AAGK-01A-11D-A42Y-10		43604576	91930171	20	2192											
COL17A1	1308	broad.mit.edu	37	chr10	105821178	105821178	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcaccggcggaggtggaaaCgccagtgttcacagccgcag	14	13	2	0	rs200123495		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	COL17A1	NM_000494	exon13	c.G964A	p.V322I	TGGAAACGCCAGT		50	3	0.06	33	0	0		149		28	0	0				T	105821178	C	T	105821178	3	4	32	1	0	0	0	0	1	0	0	0	3697	536	19	1	3705	1	COL17A1	10	105821178	Missense_Mutation	SNP	C	TCGA-2G-AAGK-01A-11D-A42Y-10	62216602	105821178	29713569	21	2193											
OR51B2	79345	mdanderson.org	37	chr11	5345000	5345000	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atgatttcttggtggaggcaGaaagcacgtgtgataacatg	13	5	1	3	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_033180	exon1	c.C528A	p.F176L	GAGGCAGAAAGCA		47	3	0.06	61	0	0				1	0	0				T	5345000	G	T	5345000	3	4	32	1	0	0	0	0	1	0	0	0	11136	933	33	3	414	3	OR51B2	11	5345000	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10		5345000	129661516	22	2194											
OR51B5	282763	mdanderson.org	37	chr11	5364396	5364396	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttgcagatggcaataaaaCggtcataggccatggcaagc	13	8	1	1	rs369290068		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_001005567	exon5	c.G359A	p.R120H	ATAAAACGGTCAT		29	3	0.1	38	0	0				4	0	0				T	5364396	C	T	5364396	3	4	32	1	0	0	0	0	1	0	0	0	11138	536	19	1	583	1	OR51B5	11	5364396	Missense_Mutation	SNP	C	TCGA-2G-AAGK-01A-11D-A42Y-10	19396	5364396	129642120	23	2195											
UBQLN3	50613	mdanderson.org	37	chr11	5529308	5529308	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcatcctgtaactgtggaGctggattcatgccatctggc	10	11	3	0	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_017481	exon2	c.C1481A	p.A494D	TGTGGAGCTGGAT		54	3	0.06	70	0	0				0	0					T	5529308	G	T	5529308	3	4	32	1	0	0	0	0	1	0	0	0	16958	971	34	2	490	2	UBQLN3	11	5529308	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	164912	5529308	129477208	24	2196											
TRIM6-TRIM34	445372	mdanderson.org	37	chr11	5631468	5631468	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaaaggatgctgcgagtGtgtagaggtaaggagattca	15	4	1	3	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_001003819	exon6	c.G951T	p.V317V	GCGAGTGTGTAGA		45	3	0.07	57	0	0				8	0	0				T	5631468	G	T	5631468	2	4	32	1	0	0	0	0	0	0	0	1	16594	1364	48	3		3	TRIM6-TRIM34	11	5631468	Silent	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	102160	5631468	129375048	25	2197											
RRAS2	22800	mdanderson.org	37	chr11	14380339	14380339	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatggtgagcgccgacttGcccacgccgcccccgccgac	13	18	0	1	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_012250	exon1	c.C78A	p.G26G	CGACTTGCCCACG		18	3	0.17	12	0	0				170	1	0.01				T	14380339	G	T	14380339	2	4	32	1	0	0	0	0	0	0	0	1	13728	1306	46	2		2	RRAS2	11	14380339	Silent	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	8748871	14380339	120626177	26	2198											
SPTBN2	6712	mdanderson.org	37	chr11	66468012	66468012	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcacctggctgctgagcacGccctcagcctgacgagcatc	10	16	2	2	rs374033075		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_006946	exon16	c.C3558T	p.G1186G	GAGCACGCCCTCA		22	2	0.09	22	0	0				15	0	0				A	66468012	G	A	66468012	2	1	32	1	0	0	0	0	0	0	0	1	15175	1074	38	1		1	SPTBN2	11	66468012	Silent	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	52087673	66468012	68538504	27	2199											
GAL	51083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	68455486	68455486	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgatctgcaaacagatgcCgttggcaaccacaggtcatt	9	11	3	2	rs367644530		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_015973	exon4	c.C141T	p.A47A	AGATGCCGTTGGC		173	10	0.06	220	0	0				316	47	0.15				T	68455486	C	T	68455486	2	4	32	1	0	0	0	0	0	0	0	1	6235	639	23	1		1	GAL	11	68455486	Silent	SNP	C	TCGA-2G-AAGK-01A-11D-A42Y-10	1987474	68455486	66551030	28	2200											
MARCH9	92979	broad.mit.edu	37	chr12	58152467	58152467	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ataggaggagatgcagggggAgggacggcagggaagtcagg	22	4	1	1	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	MARCH9	NM_138396	exon4	c.A828G	p.G276G	AGGGGGAGGGACG		128	5	0.04	105	1	0.0095238095		28		61	0	0				G	58152467	A	G	58152467	2	3	32	1	0	0	0	0	0	0	0	1	9357	291	11	4		4	MARCH9	12	58152467	Silent	SNP	A	TCGA-2G-AAGK-01A-11D-A42Y-10		58152467	75699428	29	2201											
ASCL4	121549	mdanderson.org	37	chr12	108169178	108169178	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacggggatggcagtacttGcccgtgccgctggacagcgc	16	13	0	0	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_203436	exon1	c.G186T	p.L62F	GTACTTGCCCGTG		23	2	0.09	23	0	0				1	0	0				T	108169178	G	T	108169178	3	4	32	1	0	0	0	0	1	0	0	0	1035	1310	46	2	188	2	ASCL4	12	108169178	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	50016711	108169178	25682717	30	2202											
SBNO1	55206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	123830101	123830101	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gattcagcacaaatgttgtaGtagatggaggctgctgctag	13	6	1	1	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_001167856	exon3	c.C254G	p.T85S	GTTGTAGTAGATG		81	21	0.26	92	0	0				10	3	0.3				C	123830101	G	C	123830101	3	2	32	1	0	0	0	0	1	0	0	0	13914	1029	36	5	4043	5	SBNO1	12	123830101	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	15660923	123830101	10021794	31	2203											
SACS	26278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	23906199	23906199	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gatcaactaacatttgcacaCcaatattcccctggattcta	4	12	2	0	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_014363	exon10	c.G11816C	p.G3939A	TGCACACCAATAT		108	50	0.46	123	0	0				16	5	0.31				G	23906199	C	G	23906199	3	3	32	1	0	0	0	0	1	0	0	0	13855	507	18	5	1927	5	SACS	13	23906199	Missense_Mutation	SNP	C	TCGA-2G-AAGK-01A-11D-A42Y-10		23906199	91263679	32	2204											
MAB21L1	4081	hgsc.bcm.edu	37	chr13	36050493	36050493	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgctgctgctgctgctTttcccttccttttatctttg	7	13	1	0	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	.	.	.	.	GCTGCTTTTCCCT		80	4	0.05	95	0	0				0	0					G	36050493	T	G	36050493	1	3	32	0	1	0	0	0	0	0	0	0	9186	1856	64	4		4	MAB21L1	13	36050493	RNA	SNP	T	TCGA-2G-AAGK-01A-11D-A42Y-10	12144294	36050493	79119385	33	2205											
FREM2	341640	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr13	39264104	39264104	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactcaggcacccaaacatGgccacatgagagtgtctgga	10	12	3	1	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	FREM2	NM_207361	exon1	c.G2623T	p.G875C	AAACATGGCCACA		86	5	0.06	78	0	0		385		1	0	0				T	39264104	G	T	39264104	3	4	32	1	0	0	0	0	1	0	0	0	6079	1348	47	3	2625	3	FREM2	13	39264104	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	3213611	39264104	75905774	34	2206											
MBNL2	10150	mdanderson.org	37	chr13	97995343	97995343	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccttacctagcacctgtaaCccctggagttgggttggtcc	10	13	0	0	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_207304	exon4	c.C413T	p.T138I	CTGTAACCCCTGG		105	5	0.05	115	0	0				3	0	0				T	97995343	C	T	97995343	3	4	32	1	0	0	0	0	1	0	0	0	9403	507	18	3	423	3	MBNL2	13	97995343	Missense_Mutation	SNP	C	TCGA-2G-AAGK-01A-11D-A42Y-10	58731239	97995343	17174535	35	2207											
LIPC	3990	mdanderson.org	37	chr15	58855705	58855705	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctttgtgtattcaaggGgcaaaggaattgctagtaat	10	4	2	0	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_000236	exon8	c.G1171T	p.G391C	TCAAGGGGCAAAG		33	3	0.09	47	0	0				18	0	0				T	58855705	G	T	58855705	3	4	32	1	0	0	0	0	1	0	0	0	8860	1246	43	3	1201	3	LIPC	15	58855705	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10		58855705	43675687	36	2208											
LACTB	114294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	63414877	63414877	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tagtggttggagtttctgtaGatggaaaagaagtctggtca	14	3	3	2	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_171846	exon2	c.G400A	p.D134N	TCTGTAGATGGAA		135	30	0.22	165	0	0				32	13	0.41				A	63414877	G	A	63414877	3	1	32	1	0	0	0	0	1	0	0	0	8635	942	33	3	406	3	LACTB	15	63414877	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	4559172	63414877	39116515	37	2209											
WDR90	197335	broad.mit.edu	37	chr16	705131	705131	+	Frame_Shift_Del	DEL	T	T	-													tccaggccttccgggtcaccTtttttgatgaaaccaggtga					novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	WDR90	NM_145294	exon14	c.1540delT	p.F514fs	GTCACCTTTTTTG		173	8	0.05	168	0	0		107		6	0	0				-	705131	T	-	705131	7	5	32	1	0	1	0	1	0	0	0	0	17396	1609	56	0	1594	0	WDR90	16	705131	Frame_Shift_Del	DEL	T	TCGA-2G-AAGK-01A-11D-A42Y-10		705131	89649622	38	2210											
PAQR4	124222	mdanderson.org	37	chr16	3021699	3021699	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctactggtatttggggcccGgggagtgggtctgggttcag	18	8	2	0	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	PAQR4,NS,carcinoma,0,1	PAQR4	NM_152341	exon3	c.G572A	p.R191Q	GGGCCCGGGGAGT		46	3	0.07	37	0	0		0	1	38	0	0				A	3021699	G	A	3021699	3	1	32	1	0	0	0	0	1	0	0	0	11483	1116	39	1	582	1	PAQR4	16	3021699	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	2316568	3021699	87333054	39	2211											
DDX19B	11269	mdanderson.org	37	chr16	70333207	70333207	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgcgcctgggaccatggccActgactcatgggccctggcg	14	16	1	1	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_001014451	exon1	c.A7T	p.T3S	ATGGCCACTGACT		34	3	0.09	49	0	0				33	0	0				T	70333207	A	T	70333207	3	4	32	1	0	0	0	0	1	0	0	0	4370	159	6	5	9	5	DDX19B	16	70333207	Missense_Mutation	SNP	A	TCGA-2G-AAGK-01A-11D-A42Y-10	67311508	70333207	20021546	40	2212											
CDH15	1013	broad.mit.edu;mdanderson.org	37	chr16	89254650	89254650	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgatgggcagttcaccatccGcacggaccccaagaccaacg	10	16	1	1	rs374936482		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	CDH15,NS,carcinoma,0,1	CDH15	NM_004933	exon7	c.G935A	p.R312H	CCATCCGCACGGA		90	5	0.06	92	0	0		54	1	0	0					A	89254650	G	A	89254650	3	1	32	1	0	0	0	0	1	0	0	0	3122	1087	38	1	961	1	CDH15	16	89254650	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	18921443	89254650	1100103	41	2213											
CDH15	1013	mdanderson.org	37	chr16	89260268	89260268	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agggccgcctgcacccccagCcaccccgagtgctgcccacc	10	22	0	0	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_004933	exon13	c.C2098T	p.P700S	CCCCAGCCACCCC		57	3	0.05	55	0	0				2	0	0				T	89260268	C	T	89260268	3	4	32	1	0	0	0	0	1	0	0	0	3122	739	26	2	2148	2	CDH15	16	89260268	Missense_Mutation	SNP	C	TCGA-2G-AAGK-01A-11D-A42Y-10	5618	89260268	1094485	42	2214											
NKIRAS2	28511	mdanderson.org	37	chr17	40175799	40175799	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtcagtggcggaccggcGctccctcctggagccctttg	15	14	1	0	rs375322757		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_017595	exon4	c.G464A	p.R155H	ACCGGCGCTCCCT		70	4	0.06	45	0	0				126	0	0				A	40175799	G	A	40175799	3	1	32	1	0	0	0	0	1	0	0	0	10491	1087	38	1	474	1	NKIRAS2	17	40175799	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10		40175799	41019411	43	2215											
HDAC5	10014	mdanderson.org	37	chr17	42160955	42160955	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaggccagctccagcagGcagcccactgccatgcgcac	11	16	0	1	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_001015053	exon18	c.C2424T	p.C808C	CAGCAGGCAGCCC		82	4	0.05	88	0	0				192	0	0				A	42160955	G	A	42160955	2	1	32	1	0	0	0	0	0	0	0	1	7050	1195	42	2		2	HDAC5	17	42160955	Silent	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	1985156	42160955	39034255	44	2216											
HEXIM1	0	broad.mit.edu	37	chr17	43229646	43229647	+	RNA	INS	-	-	A													ttagaccctttttctttattINStttttttttttttgagacgg					rs112374579	bycluster	TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	HEXIM1	.	.	.	.	CTTTATTTTTTTT		7	4	0.57	4	0	0		25		1	0	0				A	43229647	-	A	43229646	6	5	32	0	1	1	1	0	0	0	0	0	7116	1856	64	0		0	HEXIM1	17	43229646	RNA	INS	-	TCGA-2G-AAGK-01A-11D-A42Y-10	1068691	43229646	37965564	45	2217											
RPTOR	57521	hgsc.bcm.edu;mdanderson.org	37	chr17	78921151	78921151	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcttctgctgacggccacaGgtgagcggggtttgcacagc	15	12	1	2	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_020761	exon27	c.G3265T	p.D1089Y	GCCACAGGTGAGC		90	4	0.04	86	0	0				42	0	0				T	78921151	G	T	78921151	3	4	32	1	0	0	0	0	1	0	0	0	13716	1014	35	3	3371	3	RPTOR	17	78921151	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	35691505	78921151	2274059	46	2218											
FN3KRP	79672	broad.mit.edu	37	chr17	80674698	80674698	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgggccactcggggggcGggtgcatcagccagggccgg	19	14	1	0	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	FN3KRP	NM_024619	exon1	c.G67T	p.G23W	GGGGGCGGGTGCA		410	7	0.02	345	1	0.0028985507		31		33	0	0				T	80674698	G	T	80674698	3	4	32	1	0	0	0	0	1	0	0	0	5996	1116	39	1	69	1	FN3KRP	17	80674698	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	1753547	80674698	520512	47	2219											
FN3K	64122	broad.mit.edu;mdanderson.org	37	chr17	80696387	80696387	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccggcagatgtttgagggggAggtggccagcctggaggccc	19	10	0	2	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	FN3K	NM_022158	exon2	c.A164G	p.E55G	AGGGGGAGGTGGC		52	4	0.08	27	0	0		17		43	0	0				G	80696387	A	G	80696387	3	3	32	1	0	0	0	0	1	0	0	0	5995	304	11	4	170	4	FN3K	17	80696387	Missense_Mutation	SNP	A	TCGA-2G-AAGK-01A-11D-A42Y-10	21689	80696387	498823	48	2220											
ATP8B1	5205	mdanderson.org	37	chr18	55371824	55371824	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggaaatataaattggctGctctcttaaactgctcaaac	6	10	2	0	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_005603	exon4	c.C356A	p.A119E	TTGGCTGCTCTCT		34	3	0.09	53	0	0				8	0	0				T	55371824	G	T	55371824	3	4	32	1	0	0	0	0	1	0	0	0	1192	1319	46	2	3499	2	ATP8B1	18	55371824	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10		55371824	22705424	49	2221											
ICAM5	7087	mdanderson.org	37	chr19	10402486	10402486	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagagctccgaaccttctGtgagtgggtgtggggaggag	18	7	1	2	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_003259	exon3	c.673+1G>T	.	CCTTCTGTGAGTG		54	3	0.06	62	0	0				0	0					T	10402486	G	T	10402486	5	4	32	1	0	0	0	0	0	0	1	0	7526	1391	48	3	684	3	ICAM5	19	10402486	Splice_Site	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10		10402486	48726497	50	2222											
GTPBP3	84705	mdanderson.org	37	chr19	17449511	17449511	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcagctggacggagagctGggccacctctgccgtggctg	17	12	1	1	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_001195422	exon4	c.G618T	p.L206L	AGAGCTGGGCCAC		41	3	0.07	49	0	0				84	0	0				T	17449511	G	T	17449511	2	4	32	1	0	0	0	0	0	0	0	1	6921	1335	47	3		3	GTPBP3	19	17449511	Silent	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	7047025	17449511	41679472	51	2223											
COMP	1311	mdanderson.org	37	chr19	18896612	18896612	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacgtcgatcttgtctacCaccttgtctgcatcaaagtc	6	14	4	0	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_000095	exon14	c.G1539T	p.V513V	GTCTACCACCTTG		41	3	0.07	50	0	0				30	0	0				A	18896612	C	A	18896612	2	1	32	1	0	0	0	0	0	0	0	1	3747	581	21	3		3	COMP	19	18896612	Silent	SNP	C	TCGA-2G-AAGK-01A-11D-A42Y-10	1447101	18896612	40232371	52	2224											
NFKBIB	4793	mdanderson.org	37	chr19	39390769	39390769	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggacgcagcggcccccggaGgacctgggttgggcgcggag	20	13	0	0	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_002503	exon1	c.G97T	p.G33X	CCCGGAGGACCTG		36	3	0.08	37	0	0				70	0	0				T	39390769	G	T	39390769	4	4	32	1	0	0	0	0	0	1	0	0	10424	1001	35	3	99	3	NFKBIB	19	39390769	Nonsense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	20494157	39390769	19738214	53	2225											
LIPE	3991	mdanderson.org	37	chr19	42914477	42914477	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acctggaagcccaggcagcgGccatagaagcatcccttatg	11	13	0	1	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_005357	exon2	c.C1401A	p.G467G	GCAGCGGCCATAG		54	3	0.06	69	0	0				6	0	0				T	42914477	G	T	42914477	2	4	32	1	0	0	0	0	0	0	0	1	8861	1190	42	2		2	LIPE	19	42914477	Silent	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	3523708	42914477	16214506	54	2226											
LIPE	3991	mdanderson.org	37	chr19	42914758	42914758	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtgtgcactaggctgcGgtacccgttggccggtgtct	16	11	1	0	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_005357	exon2	c.C1120A	p.R374S	GGCTGCGGTACCC		42	3	0.07	48	0	0				7	0	0				T	42914758	G	T	42914758	3	4	32	1	0	0	0	0	1	0	0	0	8861	1116	39	1	2146	1	LIPE	19	42914758	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	281	42914758	16214225	55	2227											
NFATC2	4773	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr20	50049133	50049133	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ggggatgagagccccgtgcgGaactgctggcagggagccat	18	10	0	1	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	NFATC2	NM_012340	exon9	c.C2193A	p.F731L	CGTGCGGAACTGC		38	5	0.13	35	1	0.0285714286		112		3	1	0.33				T	50049133	G	T	50049133	3	4	32	1	0	0	0	0	1	0	0	0	10408	1165	41	3	640	3	NFATC2	20	50049133	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10		50049133	12976387	56	2228											
SDF2L1	23753	broad.mit.edu	37	chr22	21997332	21997332	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acgcaccacttcccgtcgccGctgtccaacaaccaggtgag	9	17	0	1	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	SDF2L1	NM_022044	exon2	c.G369A	p.P123P	GTCGCCGCTGTCC		176	5	0.03	145	0	0		5		222	0	0				A	21997332	G	A	21997332	2	1	32	1	0	0	0	0	0	0	0	1	14014	1074	38	1		1	SDF2L1	22	21997332	Silent	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10		21997332	29307234	57	2229											
CELSR1	9620	mdanderson.org	37	chr22	46931106	46931106	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaccgcctccaccccgaaGctgtagtgctccacctcctc	6	21	0	0	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	.	NM_014246	exon1	c.C1962A	p.S654R	CCCGAAGCTGTAG		34	3	0.09	18	0	0				11	0	0				T	46931106	G	T	46931106	3	4	32	1	0	0	0	0	1	0	0	0	3243	962	34	2	7222	2	CELSR1	22	46931106	Missense_Mutation	SNP	G	TCGA-2G-AAGK-01A-11D-A42Y-10	24933774	46931106	4373460	58	2230											
PNPLA4	8228	broad.mit.edu	37	chrX	7868821	7868821	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctcttgcttgggggaaaaAgggcttggttgagtctcacc	13	9	2	1	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	PNPLA4	NM_004650	exon7	c.T668C	p.L223P	GGAAAAAGGGCTT		533	5	0.01	309	1	0.003236246		24		277	0	0				G	7868821	A	G	7868821	3	3	32	1	0	0	0	0	1	0	0	0	12214	72	3	4	97	4	PNPLA4	23	7868821	Missense_Mutation	SNP	A	TCGA-2G-AAGK-01A-11D-A42Y-10		7868821	147401739	59	2231											
SPIN2A	54466	broad.mit.edu	37	chrX	57162583	57162583	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtgcttgagctaagaccaTccccctccattcatccttag	7	14	1	2	novel		TCGA-2G-AAGK-01A-11D-A42Y-10	TCGA-2G-AAGK-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7bcb4a63-6ec0-420e-a4a3-92c2def85631	0d7f38e3-4f2b-481a-a7ec-4a19c0dda625	.	SPIN2A	NM_019003	exon2	c.A448G	p.M150V	AGACCATCCCCCT		760	6	0.01	415	1	0.0024096386		7		0	0					C	57162583	T	C	57162583	3	2	32	1	0	0	0	0	1	0	0	0	15108	1435	50	4	332	4	SPIN2A	23	57162583	Missense_Mutation	SNP	T	TCGA-2G-AAGK-01A-11D-A42Y-10	49293762	57162583	98107977	60	2232											
AHDC1	27245	broad.mit.edu	37	chr1	27878527	27878528	+	Frame_Shift_Ins	INS	-	-	G													ggaagcaggggccggggggtINSgggggggccgccggggtagt					novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	AHDC1	NM_001029882	exon6	c.100_101insC	p.T34fs	GGGGGGTGGGGGG		38	10	0.26	51	0	0		98		5	0	0				G	27878528	-	G	27878527	7	5	33	1	0	1	1	0	0	0	0	0	409	1696	59	0	4715	0	AHDC1	1	27878527	Frame_Shift_Ins	INS	-	TCGA-2G-AAGM-01A-11D-A42Y-10		27878527	221372094	1	2233											
SF3A3	10946	broad.mit.edu	37	chr1	38442580	38442580	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agaatctctacatattcataGatctgggcttctagaaaagc	7	8	4	3	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	SF3A3	NM_006802	exon12	c.C981A	p.I327I	TTCATAGATCTGG		102	4	0.04	98	0	0		37		374	0	0				T	38442580	G	T	38442580	2	4	33	1	0	0	0	0	0	0	0	1	14201	932	33	3		3	SF3A3	1	38442580	Silent	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	10564053	38442580	210808041	2	2234											
ATP1A4	480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	160151732	160151732	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcccagaaacaaagtcttAatatttgggatcctggagga	9	8	1	1	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_144699	exon20	c.A2880G	p.L960L	AGTCTTAATATTT		114	58	0.51	128	0	0				16	6	0.38				G	160151732	A	G	160151732	2	3	33	1	0	0	0	0	0	0	0	1	1130	359	13	4		4	ATP1A4	1	160151732	Silent	SNP	A	TCGA-2G-AAGM-01A-11D-A42Y-10	121709152	160151732	89098889	3	2235											
PIK3C2B	5287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	204403713	204403713	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccacgcagcagccagcgcaGgagtagataaagttctccac	11	13	1	1	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_002646	exon25	c.C3540T	p.S1180S	AGCGCAGGAGTAG		105	21	0.2	145	0	0				16	3	0.19				A	204403713	G	A	204403713	2	1	33	1	0	0	0	0	0	0	0	1	11957	987	35	3		3	PIK3C2B	1	204403713	Silent	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	44251981	204403713	44846908	4	2236											
AKT3	10000	mdanderson.org	37	chr1	243828083	243828083	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatttcttacctttcctctGgagtatctacatgaaatgtt	6	8	3	1	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_001206729	exon4	c.C275A	p.P92Q	TCCTCTGGAGTAT		43	3	0.07	64	0	0				36	1	0.03				T	243828083	G	T	243828083	3	4	33	1	0	0	0	0	1	0	0	0	478	1348	47	3	1256	3	AKT3	1	243828083	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	39424370	243828083	5422538	5	2237											
RANBP2	5903	mdanderson.org	37	chr2	109380793	109380793	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagacagatcttttgtatgGcatgcccttgattatgcaga	9	8	2	4	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_006267	exon20	c.G3798T	p.W1266C	TGTATGGCATGCC		48	3	0.06	51	0	0				62	0	0				T	109380793	G	T	109380793	3	4	33	1	0	0	0	0	1	0	0	0	13079	1212	42	2	3876	2	RANBP2	2	109380793	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10		109380793	133818580	6	2238											
CNTNAP5	129684	mdanderson.org	37	chr2	125281916	125281916	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcctgtggcactcggttaGcatcaacgccaggaggaacc	13	12	1	0	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	CNTNAP5,rectum,carcinoma,0,2	CNTNAP5	NM_130773	exon9	c.G1361T	p.S454I	CGGTTAGCATCAA		97	4	0.04	111	1	0.009009009		0	2	0	0					T	125281916	G	T	125281916	3	4	33	1	0	0	0	0	1	0	0	0	3673	971	34	2	1395	2	CNTNAP5	2	125281916	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	15901123	125281916	117917457	7	2239											
TANK	10010	broad.mit.edu	37	chr2	162087615	162087615	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcacaccaagaggactgtgCagagatgaggaagacacctc	12	10	1	4	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	TANK	NM_004180	exon7	c.C654T	p.C218C	ACTGTGCAGAGAT		233	4	0.02	332	0	0		35		31	0	0				T	162087615	C	T	162087615	2	4	33	1	0	0	0	0	0	0	0	1	15602	718	25	2		2	TANK	2	162087615	Silent	SNP	C	TCGA-2G-AAGM-01A-11D-A42Y-10	36805699	162087615	81111758	8	2240											
OBSL1	23363	ucsc.edu	37	chr2	220422605	220422605	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctgctccagactggcaggTgtagagccctgcatgggctg	16	11	0	2	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	OBSL1	NM_001173431	exon11	c.A3730C	p.T1244P	GGCAGGTGTAGAG		32	10	0.31	27	12	0.4444444444		120		123	28	0.23				G	220422605	T	G	220422605	3	3	33	1	0	0	0	0	1	0	0	0	10860	1696	59	4	2027	4	OBSL1	2	220422605	Missense_Mutation	SNP	T	TCGA-2G-AAGM-01A-11D-A42Y-10	58334990	220422605	22776768	9	2241											
SP100	6672	broad.mit.edu;mdanderson.org	37	chr2	231368922	231368922	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaagaattcccaaagatgAaaatattaattttaaacaat	3	6	0	3	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	SP100	NM_001080391	exon21	c.A1787G	p.E596G	AAGATGAAAATAT		89	4	0.04	95	1	0.0105263158		167		4	0	0				G	231368922	A	G	231368922	3	3	33	1	0	0	0	0	1	0	0	0	15013	246	9	4	1869	4	SP100	2	231368922	Missense_Mutation	SNP	A	TCGA-2G-AAGM-01A-11D-A42Y-10	10946317	231368922	11830451	10	2242											
GPR35	2859	mdanderson.org	37	chr2	241569516	241569516	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtgttctgctgccgcatGcagcagtggacggagacccg	16	11	1	1	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_001195382	exon6	c.G240T	p.M80I	CCGCATGCAGCAG		34	3	0.09	48	0	0				9	0	0				T	241569516	G	T	241569516	3	4	33	1	0	0	0	0	1	0	0	0	6729	1319	46	2	149	2	GPR35	2	241569516	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	10200594	241569516	1629857	11	2243											
CCDC54	84692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	107097048	107097048	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccagttatccaaagtccaCtgaccatcttgagaaaaaaa	6	11	1	2	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_032600	exon1	c.C614T	p.T205I	AGTCCACTGACCA		311	112	0.36	394	0	0				0	0					T	107097048	C	T	107097048	3	4	33	1	0	0	0	0	1	0	0	0	2844	565	20	3	616	3	CCDC54	3	107097048	Missense_Mutation	SNP	C	TCGA-2G-AAGM-01A-11D-A42Y-10		107097048	90925382	12	2244											
TNIK	23043	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	170856034	170856034	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	attccttctttgtaatggtaCagtggcttcttctccacagg	8	10	3	0	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	TNIK	NM_001161564	exon15	c.G1554T	p.L518L	ATGGTACAGTGGC		182	18	0.1	250	1	0.004		313		30	8	0.27				A	170856034	C	A	170856034	2	1	33	1	0	0	0	0	0	0	0	1	16372	465	17	3		3	TNIK	3	170856034	Silent	SNP	C	TCGA-2G-AAGM-01A-11D-A42Y-10	63758986	170856034	27166396	13	2245											
CLNK	116449	mdanderson.org	37	chr4	10567665	10567665	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attcctttataggccgggctGgtaaaattttaatcgactgc	9	8	0	0	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_052964	exon6	c.C260A	p.P87Q	CGGGCTGGTAAAA		85	4	0.05	132	0	0				0	0					T	10567665	G	T	10567665	3	4	33	1	0	0	0	0	1	0	0	0	3570	1348	47	3	1082	3	CLNK	4	10567665	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10		10567665	180586611	14	2246											
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	30725848	30725848	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacaaatctaaaaagcctaAaaaggacaagaaaaacaaaa	5	6	1	2	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_032457	exon1	c.A2804G	p.K935R	AGCCTAAAAAGGA		57	21	0.37	81	0	0				49	25	0.51				G	30725848	A	G	30725848	3	3	33	1	0	0	0	0	1	0	0	0	11562	14	1	4	2806	4	PCDH7	4	30725848	Missense_Mutation	SNP	A	TCGA-2G-AAGM-01A-11D-A42Y-10	20158183	30725848	160428428	15	2247											
FRYL	285527	broad.mit.edu	37	chr4	48537740	48537740	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tcatgcaggtatctgcacacGacattgatccagttagaaca	8	10	2	2	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	FRYL	NM_015030	exon48	c.C6498A	p.V2166V	GCACACGACATTG		337	5	0.01	459	0	0		242		11	0	0				T	48537740	G	T	48537740	2	4	33	1	0	0	0	0	0	0	0	1	6098	1045	37	1		1	FRYL	4	48537740	Silent	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	17811892	48537740	142616536	16	2248											
PDLIM5	10611	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	95496980	95496980	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccttcacccgtggctgccGtcactcctcccctgttcgct	7	21	2	0	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	PDLIM5	NM_006457	exon5	c.G505C	p.V169L	GCTGCCGTCACTC		220	56	0.25	332	2	0.0060240964		76		59	15	0.25				C	95496980	G	C	95496980	3	2	33	1	0	0	0	0	1	0	0	0	11729	1145	40	5	519	5	PDLIM5	4	95496980	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	46959240	95496980	95657296	17	2249											
PDE5A	8654	mdanderson.org	37	chr4	120423806	120423806	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attcagttgctacaagttctGctatctgaaataaataacag	6	7	3	1	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_001083	exon19	c.C2336A	p.A779E	AGTTCTGCTATCT		44	3	0.07	67	0	0				4	0	0				T	120423806	G	T	120423806	3	4	33	1	0	0	0	0	1	0	0	0	11690	1319	46	2	303	2	PDE5A	4	120423806	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	24926826	120423806	70730470	18	2250											
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	125631497	125631497	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	caccactagcattattcccaGaattcattacaagtgatggt	6	10	1	2	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_020337	exon2	c.C170T	p.S57F	TTCCCAGAATTCA		161	38	0.24	281	0	0				20	7	0.35				A	125631497	G	A	125631497	3	1	33	1	0	0	0	0	1	0	0	0	671	942	33	3	4131	3	ANKRD50	4	125631497	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	5207691	125631497	65522779	19	2251											
KIAA0947	23379	mdanderson.org	37	chr5	5473678	5473678	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcatttgctagaatgcccCggtagatgttggcttcatgg	11	8	2	2	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_015325	exon16	c.C6230A	p.P2077Q	ATGCCCCGGTAGA		34	3	0.09	81	0	0				57	1	0.02				A	5473678	C	A	5473678	3	1	33	1	0	0	0	0	1	0	0	0	8243	652	23	1	6292	1	KIAA0947	5	5473678	Missense_Mutation	SNP	C	TCGA-2G-AAGM-01A-11D-A42Y-10		5473678	175441582	20	2252											
SLC25A46	91137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	110097196	110097196	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tattgctaactttgctgccaGtctttgttctgacgttatac	7	9	2	1	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_138773	exon8	c.G971A	p.S324N	CTGCCAGTCTTTG		83	24	0.29	129	0	0				10	1	0.1				A	110097196	G	A	110097196	3	1	33	1	0	0	0	0	1	0	0	0	14565	1029	36	3	1001	3	SLC25A46	5	110097196	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	104623518	110097196	70818064	21	2253											
PCDHB7	56129	hgsc.bcm.edu	37	chr5	140553994	140553994	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gactacgaggccctgcaggcGttcgagttccgcgtgggcgc	16	13	0	0	rs374392843		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	PCDHB7,NS,carcinoma,0,4	PCDHB7	NM_018940	exon1	c.G1578T	p.A526A	GCAGGCGTTCGAG		44	3	0.07	70	1	0.0142857143		0	4	11	0	0				T	140553994	G	T	140553994	2	4	33	1	0	0	0	0	0	0	0	1	11593	1132	40	1		1	PCDHB7	5	140553994	Silent	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	30456798	140553994	40361266	22	2254											
FAT2	2196	bcgsc.ca	37	chr5	150917382	150917382	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatccagcttgaattcatgCgccccagggccatgcagaga	12	12	1	2	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	FAT2,brain,atypical_teratoid-rhabdoid_tumour,0,1	FAT2	NM_001447	exon11	c.G9165A	p.A3055A	TTCATGCGCCCCA		151	6	0.04	198	0	0		465	1	1	0	0				T	150917382	C	T	150917382	2	4	33	1	0	0	0	0	0	0	0	1	5722	755	27	1		1	FAT2	5	150917382	Silent	SNP	C	TCGA-2G-AAGM-01A-11D-A42Y-10	10363388	150917382	29997878	23	2255											
GEMIN5	25929	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr5	154268931	154268931	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgatttgcctcggtaagccTtttggttaactcaggcagag	11	9	1	2	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_015465	exon27	c.A4309G	p.R1437G	TAAGCCTTTTGGT		99	4	0.04	141	0	0				78	0	0				C	154268931	T	C	154268931	3	2	33	1	0	0	0	0	1	0	0	0	6372	1608	56	4	225	4	GEMIN5	5	154268931	Missense_Mutation	SNP	T	TCGA-2G-AAGM-01A-11D-A42Y-10	3351549	154268931	26646329	24	2256											
CPEB4	80315	broad.mit.edu	37	chr5	173383109	173383109	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaaggaaggcggtgaccGccctcggcatatttcattcc	13	11	1	2	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	CPEB4	NM_030627	exon10	c.G2159A	p.R720H	GTGACCGCCCTCG		90	3	0.03	131	0	0		54		3	0	0				A	173383109	G	A	173383109	3	1	33	1	0	0	0	0	1	0	0	0	3826	1087	38	1	2197	1	CPEB4	5	173383109	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	19114178	173383109	7532151	25	2257											
PRDM13	59336	broad.mit.edu	37	chr6	100061625	100061627	+	In_Frame_Del	DEL	CCG	CCG	-													agtgcctgctcgctggggacCcgccgccgccgccgccgcct					rs370363311		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	CCG	CCG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	PRDM13	NM_021620	exon4	c.1114_1116del	p.372_372del	GGGGACCCGCCGC		6	4	0.67	9	0	0		65		0	0					-	100061627	CCG	-	100061625	7	5	33	1	0	1	0	1	0	0	0	0	12505	623	22	0	1128	0	PRDM13	6	100061625	In_Frame_Del	DEL	CCG	TCGA-2G-AAGM-01A-11D-A42Y-10		100061625	71053442	26	2258											
HBS1L	10767	mdanderson.org	37	chr6	135318078	135318078	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	acttttcccagcatcaacatGacctaaagaaaattgattca	4	10	2	3	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_006620	exon7	c.C802A	p.H268N	CAACATGACCTAA		45	3	0.07	80	0	0				92	0	0				T	135318078	G	T	135318078	3	4	33	1	0	0	0	0	1	0	0	0	7027	1290	45	3	1300	3	HBS1L	6	135318078	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	35256453	135318078	35796989	27	2259											
PMS2	5395	broad.mit.edu	37	chr7	6017231	6017231	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacttaccgacttccggcaGgctctggaggcaaacatctg	10	12	2	0	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	PMS2	NM_000535	exon14	c.C2433A	p.A811A	CCGGCAGGCTCTG		296	84	0.28	365	0	0		88		14	5	0.36				T	6017231	G	T	6017231	2	4	33	1	0	0	0	0	0	0	0	1	12190	987	35	3		3	PMS2	7	6017231	Silent	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10		6017231	153121432	28	2260											
TNS3	64759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	47343091	47343091	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtaccggagaactcagcgcTgaggggacttccggtgggcc	17	11	1	2	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_022748	exon22	c.A2914T	p.S972C	CAGCGCTGAGGGG		37	5	0.14	42	0	0				83	16	0.19				A	47343091	T	A	47343091	3	1	33	1	0	0	0	0	1	0	0	0	16403	1580	55	5	1463	5	TNS3	7	47343091	Missense_Mutation	SNP	T	TCGA-2G-AAGM-01A-11D-A42Y-10	41325860	47343091	111795572	29	2261											
TPST1	8460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	65705578	65705578	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccactgtgagaactggcctgGacctcaaagccaacaaaacc	8	14	1	1	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_003596	exon2	c.G166T	p.D56Y	GGCCTGGACCTCA		140	20	0.14	133	0	0				113	29	0.26				T	65705578	G	T	65705578	3	4	33	1	0	0	0	0	1	0	0	0	16487	1174	41	3	168	3	TPST1	7	65705578	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	18362487	65705578	93433085	30	2262											
AUTS2	26053	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	70252379	70252379	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gacagagatagagatgtagaTaaacgagactcatctgttag	11	5	2	4	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	AUTS2	NM_015570	exon18	c.T2493G	p.D831E	TGTAGATAAACGA		106	19	0.18	177	2	0.011299435		173		54	17	0.31				G	70252379	T	G	70252379	3	3	33	1	0	0	0	0	1	0	0	0	1223	1403	49	4	2708	4	AUTS2	7	70252379	Missense_Mutation	SNP	T	TCGA-2G-AAGM-01A-11D-A42Y-10	4546801	70252379	88886284	31	2263											
STAG3L2	0	broad.mit.edu	37	chr7	74306639	74306639	+	RNA	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cggaaaccgccagacaccaaCgctcggaatacacgccagac	9	16	0	2	rs76222990		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	STAG3L2	.	.	.	.	CACCAACGCTCGG		8	2	0.25	22	0	0		8		13	0	0				G	74306639	C	G	74306639	1	3	33	0	1	0	0	0	0	0	0	0	15300	551	19	5		5	STAG3L2	7	74306639	RNA	SNP	C	TCGA-2G-AAGM-01A-11D-A42Y-10	4054260	74306639	84832024	32	2264											
AKAP9	10142	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	91691612	91691612	+	Frame_Shift_Del	DEL	A	A	-													cattgatggctatgcagatgAaaaaactctttttgaaaggc					novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	AKAP9	NM_147185	exon24	c.5788delG	p.E1930fs	CAGATGAAAAAAC		185	29	0.16	295	0	0		788		11	0	0				-	91691612	A	-	91691612	7	5	33	1	0	1	0	1	0	0	0	0	456	246	9	0	5883	0	AKAP9	7	91691612	Frame_Shift_Del	DEL	A	TCGA-2G-AAGM-01A-11D-A42Y-10	17384973	91691612	67447051	33	2265											
SMURF1	57154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	98628279	98628280	+	Frame_Shift_Del	DEL	AT	AT	-													tagagcttctcataggactcAtatggtggaatgtcgatccg					novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	AT	AT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	SMURF1	NM_020429	exon19	c.2202_2203del	p.734_735del	GGACTCATATGGT		47	13	0.28	96	0	0		58		46	0	0				-	98628280	AT	-	98628279	7	5	33	1	0	1	0	1	0	0	0	0	14872	224	8	0	75	0	SMURF1	7	98628279	Frame_Shift_Del	DEL	AT	TCGA-2G-AAGM-01A-11D-A42Y-10	6936667	98628279	60510384	34	2266											
TRPV6	55503	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	142570126	142570126	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acccccgcatatcactcaccGcaggaaccagcggtctccca	7	19	3	0	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	TRPV6,NS,carcinoma,0,1	TRPV6	NM_018646	exon14	c.C1894T	p.R632W	CTCACCGCAGGAA		27	4	0.15	77	0	0		108	1	9	0	0				A	142570126	G	A	142570126	5	1	33	1	0	0	0	0	0	0	1	0	16660	1101	38	1	291	1	TRPV6	7	142570126	Splice_Site	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	43941847	142570126	16568537	35	2267											
ZNF398	57541	mdanderson.org	37	chr7	148851348	148851348	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacgggctgctgcagaggcgGctggagaacttggagaacct	16	9	0	3	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_170686	exon2	c.G336T	p.R112R	GAGGCGGCTGGAG		48	3	0.06	57	0	0				19	0	0				T	148851348	G	T	148851348	2	4	33	1	0	0	0	0	0	0	0	1	17941	1190	42	2		2	ZNF398	7	148851348	Silent	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	6281222	148851348	10287315	36	2268											
RBM33	155435	mdanderson.org	37	chr7	155473369	155473369	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acaacactaacgaccaatctGgagaacaggaatctgagtat	8	9	2	2	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_053043	exon5	c.G334T	p.G112X	CAATCTGGAGAAC		33	3	0.09	65	0	0				48	0	0				T	155473369	G	T	155473369	4	4	33	1	0	0	0	0	0	1	0	0	13181	1349	47	3	352	3	RBM33	7	155473369	Nonsense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	6622021	155473369	3665294	37	2269											
FAM83H	286077	mdanderson.org	37	chr8	144808833	144808833	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taagggtgaggctgcccctgCgctccggcacggggggcacc	17	14	0	1	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	FAM83H,NS,carcinoma,-1,1	FAM83H	NM_198488	exon5	c.G2798A	p.R933H	CCCCTGCGCTCCG		16	2	0.13	21	0	0		-1	1	56	0	0				T	144808833	C	T	144808833	3	4	33	1	0	0	0	0	1	0	0	0	5671	768	27	1	745	1	FAM83H	8	144808833	Missense_Mutation	SNP	C	TCGA-2G-AAGM-01A-11D-A42Y-10		144808833	1555189	38	2270											
GOLGA2	2801	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr9	131022893	131022893	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccccccagagctcggccgCccgctccagctccagcagcc	9	23	0	1	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	GOLGA2	NM_004486	exon17	c.G1528A	p.A510T	CGGCCGCCCGCTC		20	5	0.25	26	0	0		69		67	8	0.12				T	131022893	C	T	131022893	3	4	33	1	0	0	0	0	1	0	0	0	6593	739	26	2	1520	2	GOLGA2	9	131022893	Missense_Mutation	SNP	C	TCGA-2G-AAGM-01A-11D-A42Y-10		131022893	10190538	39	2271											
ARHGAP21	57584	mdanderson.org	37	chr10	24908615	24908615	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agatggaggtttttcccttaGgatgacagcttctttattat	9	6	1	2	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_020824	exon9	c.C2209A	p.L737I	CCCTTAGGATGAC		92	4	0.04	101	0	0				30	0	0				T	24908615	G	T	24908615	3	4	33	1	0	0	0	0	1	0	0	0	868	991	35	3	3739	3	ARHGAP21	10	24908615	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10		24908615	110626132	40	2272											
UBE2D1	7321	mdanderson.org	37	chr10	60121140	60121140	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atccacctgctcactgttcaGctggacctgtgggagatgac	11	12	2	2	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_003338	exon2	c.G67T	p.A23S	TGTTCAGCTGGAC		116	5	0.04	133	0	0				68	0	0				T	60121140	G	T	60121140	3	4	33	1	0	0	0	0	1	0	0	0	16908	971	34	2	73	2	UBE2D1	10	60121140	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	35212525	60121140	75413607	41	2273											
NAT10	55226	broad.mit.edu	37	chr11	34149080	34149080	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gattgatgaagctgccgccaTccccctccccttggtgaaga	10	14	0	4	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	NAT10	NM_024662	exon12	c.T1178C	p.I393T	CCGCCATCCCCCT		155	4	0.03	212	0	0		78		88	0	0				C	34149080	T	C	34149080	3	2	33	1	0	0	0	0	1	0	0	0	10221	1435	50	4	1220	4	NAT10	11	34149080	Missense_Mutation	SNP	T	TCGA-2G-AAGM-01A-11D-A42Y-10		34149080	100857436	42	2274											
PLCB3	5331	mdanderson.org	37	chr11	64032973	64032973	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gccggctgcggccaggtgccCtgtgagtgtctgggccgcct	17	14	1	1	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_000932	exon25	c.C3034A	p.L1012I	GGTGCCCTGTGAG		38	3	0.08	18	0	0				86	0	0				A	64032973	C	A	64032973	3	1	33	1	0	0	0	0	1	0	0	0	12076	695	24	3	3132	3	PLCB3	11	64032973	Missense_Mutation	SNP	C	TCGA-2G-AAGM-01A-11D-A42Y-10	29883893	64032973	70973543	43	2275											
SNX32	254122	mdanderson.org	37	chr11	65617691	65617691	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acagaaattgggcgagggggAcagctctgtcactcgggaag	16	8	2	1	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_152760	exon4	c.A323G	p.D108G	AGGGGGACAGCTC		59	4	0.07	86	0	0				0	0					G	65617691	A	G	65617691	3	3	33	1	0	0	0	0	1	0	0	0	14955	275	10	4	337	4	SNX32	11	65617691	Missense_Mutation	SNP	A	TCGA-2G-AAGM-01A-11D-A42Y-10	1584718	65617691	69388825	44	2276											
TCIRG1	10312	mdanderson.org	37	chr11	67818021	67818021	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggccgggaggtgggcgtGgcggctgtggtgctggtccc	22	10	0	0	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_006019	exon19	c.G2304T	p.V768V	GGGCGTGGCGGCT		50	3	0.06	75	0	0				35	0	0				T	67818021	G	T	67818021	2	4	33	1	0	0	0	0	0	0	0	1	15762	1335	47	3		3	TCIRG1	11	67818021	Silent	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	2200330	67818021	67188495	45	2277											
PAK1	5058	mdanderson.org	37	chr11	77085377	77085377	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaaataaagacttaccaagGcattagaagaattgtaatcc	7	6	0	3	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_001128620	exon5	c.C473A	p.A158D	ACCAAGGCATTAG		52	3	0.06	73	0	0				91	0	0				T	77085377	G	T	77085377	3	4	33	1	0	0	0	0	1	0	0	0	11445	1203	42	2	1261	2	PAK1	11	77085377	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	9267356	77085377	57921139	46	2278											
GXYLT1	283464	hgsc.bcm.edu	37	chr12	42481670	42481671	+	Missense_Mutation	DNP	CA	CA	TG													atattttgtaaatttttccaCagtatgtatgcactgttttt					novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	CA	CA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	Q8IXV1_HUMAN,NS,carcinoma,0,4	Q8IXV1_HUMAN	NM_173601	exon8	c.T1240C	p.C414H	TTTCCACAGTATG		74	4	0.05	95	1	0.0105263158		0	4	54	0	0				TG	42481671	CA	TG	42481670	3	4	33	1	0	0	0	0	1	0	0	0	6943	478	17	3	85	3	GXYLT1	12	42481670	Missense_Mutation	DNP	CA	TCGA-2G-AAGM-01A-11D-A42Y-10		42481670	91370225	47	2279											
MYO16	23026	mdanderson.org	37	chr13	109445885	109445885	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggatttgacctcactgcGccagatgaagcttcagagac	11	10	2	4	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	MYO16,rectum,carcinoma,0,1	MYO16	NM_001198950	exon6	c.G638T	p.R213L	CACTGCGCCAGAT		55	3	0.05	91	0	0		0	1	0	0					T	109445885	G	T	109445885	3	4	33	1	0	0	0	0	1	0	0	0	10111	1087	38	1	590	1	MYO16	13	109445885	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10		109445885	5723993	48	2280											
FOXA1	3169	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr14	38064138	38064138	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	tgcgtagtagctgttccagtCgctggtttcatgcccttcca	10	12	1	0	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_004496	exon1	c.G40C	p.D14H	TCCAGTCGCTGGT		79	8	0.1	106	0	0				70	7	0.1				G	38064138	C	G	38064138	3	3	33	1	0	0	0	0	1	0	0	0	6021	884	31	5	1386	5	FOXA1	14	38064138	Missense_Mutation	SNP	C	TCGA-2G-AAGM-01A-11D-A42Y-10		38064138	69285402	49	2281											
HIF1A	3091	broad.mit.edu	37	chr14	62193436	62193436	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcattaggccttgtgaaaaAgggtaaagaacaaaacacac	8	7	1	2	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	HIF1A	NM_001243084	exon5	c.A542G	p.K181R	TGAAAAAGGGTAA		288	4	0.01	292	0	0		120		305	0	0				G	62193436	A	G	62193436	3	3	33	1	0	0	0	0	1	0	0	0	7143	72	3	4	488	4	HIF1A	14	62193436	Missense_Mutation	SNP	A	TCGA-2G-AAGM-01A-11D-A42Y-10	24129298	62193436	45156104	50	2282											
CCPG1	9236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr15	55669303	55669303	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aatatcagaatcatcactggCagttccaatatagatactgt	6	8	3	2	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_020739	exon5	c.G298T	p.A100S	CACTGGCAGTTCC		150	10	0.07	240	0	0				53	3	0.06				A	55669303	C	A	55669303	3	1	33	1	0	0	0	0	1	0	0	0	2960	710	25	2	1991	2	CCPG1	15	55669303	Missense_Mutation	SNP	C	TCGA-2G-AAGM-01A-11D-A42Y-10		55669303	46862089	51	2283											
ZNF609	23060	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	64967246	64967247	+	Frame_Shift_Ins	INS	-	-	A													aggacaagaaaaagaaagacINSaaaaaaaagaaggaatcttc					novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	ZNF609	NM_015042	exon4	c.2193_2194insA	p.D731fs	GAAAGACAAAAAA		41	13	0.32	64	0	0		106		18	0	0				A	64967247	-	A	64967246	7	5	33	1	0	1	1	0	0	0	0	0	18091	477	17	0	2207	0	ZNF609	15	64967246	Frame_Shift_Ins	INS	-	TCGA-2G-AAGM-01A-11D-A42Y-10	9297943	64967246	37564146	52	2284											
ZNF609	23060	mdanderson.org	37	chr15	64967320	64967320	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtgtcgagcagaggaagGcaaaagcccattcagggaat	15	7	1	1	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_015042	exon4	c.G2267A	p.G756D	AGGAAGGCAAAAG		53	3	0.06	92	0	0				24	0	0				A	64967320	G	A	64967320	3	1	33	1	0	0	0	0	1	0	0	0	18091	1203	42	2	2281	2	ZNF609	15	64967320	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	74	64967320	37564072	53	2285											
IFT140	9742	mdanderson.org	37	chr16	1634259	1634259	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgtgcatgtcggtgcgcaGgctgtgtgcgacccccgtgg	17	11	0	0	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_014714	exon11	c.C1318A	p.L440M	TGCGCAGGCTGTG		43	3	0.07	47	0	0				43	0	0				T	1634259	G	T	1634259	3	4	33	1	0	0	0	0	1	0	0	0	7599	991	35	3	3154	3	IFT140	16	1634259	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10		1634259	88720494	54	2286											
MAZ	4150	mdanderson.org	37	chr16	29818801	29818801	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagatgccgaccatggtgcCcctgagcctcctgagcgtgc	13	14	0	3	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_002383	exon2	c.C695A	p.P232H	TGGTGCCCCTGAG		61	3	0.05	69	0	0				612	1	0				A	29818801	C	A	29818801	3	1	33	1	0	0	0	0	1	0	0	0	9389	623	22	3	701	3	MAZ	16	29818801	Missense_Mutation	SNP	C	TCGA-2G-AAGM-01A-11D-A42Y-10	28184542	29818801	60535952	55	2287											
CAMKK1	84254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	3779556	3779556	+	Frame_Shift_Del	DEL	G	G	-													ccggaatcagaaatggcctcGggggccatgaatgctggggt					novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	CAMKK1_ENST00000158166,colon,carcinoma,0,2	CAMKK1	NM_172207	exon11	c.1072delG	p.E358fs	GGCCTCGGGGGCC		94	35	0.37	105	0	0		70		26	0	0				-	3779556	G	-	3779556	7	5	33	1	0	1	0	1	0	0	0	0	2624	1103	39	0	592	0	CAMKK1	17	3779556	Frame_Shift_Del	DEL	G	TCGA-2G-AAGM-01A-11D-A42Y-10		3779556	77415654	56	2288											
CELF4	56853	mdanderson.org	37	chr18	34846535	34846535	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccggcgtaggcctgctgcaGggggtccgcggcggtggggc	21	12	0	0	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_020180	exon9	c.C1126A	p.L376M	GCTGCAGGGGGTC		43	3	0.07	67	0	0				1	0	0				T	34846535	G	T	34846535	3	4	33	1	0	0	0	0	1	0	0	0	3240	991	35	3	350	3	CELF4	18	34846535	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10		34846535	43230713	57	2289											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	9086806	9086808	+	In_Frame_Del	DEL	CTT	CTT	-													tagagacagtggctgtagaaCttcttctttccagtgccatg					novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	CTT	CTT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	MUC16	NM_024690	exon1	c.5008_5010del	p.1670_1670del	GTAGAACTTCTTC		101	15	0.15	144	0	0		4315		0	0					-	9086808	CTT	-	9086806	7	5	33	1	0	1	0	1	0	0	0	0	10020	565	20	0	38850	0	MUC16	19	9086806	In_Frame_Del	DEL	CTT	TCGA-2G-AAGM-01A-11D-A42Y-10		9086806	50042177	58	2290											
TYK2	7297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	10488908	10488908	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accaactttatgtgcaatgtGgatgcagacttcctcagctg	9	10	1	1	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_003331	exon3	c.C175T	p.H59Y	CAATGTGGATGCA		88	17	0.19	89	0	0				51	6	0.12				A	10488908	G	A	10488908	3	1	33	1	0	0	0	0	1	0	0	0	16871	1348	47	3	3480	3	TYK2	19	10488908	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	1402102	10488908	48640075	59	2291											
S1PR5	53637	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	10624996	10624996	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgaggtggtccccgcagtcCcgggccgtgccggcaggcgc	17	16	0	0	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_030760	exon2	c.G692A	p.G231E	GCAGTCCCGGGCC		41	20	0.49	40	0	0				7	4	0.57				T	10624996	C	T	10624996	3	4	33	1	0	0	0	0	1	0	0	0	13848	623	22	3	508	3	S1PR5	19	10624996	Missense_Mutation	SNP	C	TCGA-2G-AAGM-01A-11D-A42Y-10	136088	10624996	48503987	60	2292											
CACNA1A	773	mdanderson.org	37	chr19	13443691	13443691	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagagcagttaccatcaaagGgatgcctctgctccccgtca	9	13	3	1	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_001127222	exon9	c.C1247A	p.P416H	TCAAAGGGATGCC		32	3	0.09	58	0	0				0	0					T	13443691	G	T	13443691	3	4	33	1	0	0	0	0	1	0	0	0	2556	1232	43	3	6543	3	CACNA1A	19	13443691	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	2818695	13443691	45685292	61	2293											
MAP3K10	4294	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr19	40711055	40711055	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacccagacccccacgggcGgccagatttcggtagcatct	12	15	1	2	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_002446	exon4	c.G1040T	p.R347L	ACGGGCGGCCAGA		105	5	0.05	154	0	0				47	0	0				T	40711055	G	T	40711055	3	4	33	1	0	0	0	0	1	0	0	0	9293	1116	39	1	1054	1	MAP3K10	19	40711055	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	27267364	40711055	18417928	62	2294											
SYMPK	8189	broad.mit.edu	37	chr19	46355581	46355581	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gccccataccatgcctcctcGatgaagccgatgacaaattt	7	14	0	2	rs371606879	alternate_allele	TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	SYMPK	NM_004819	exon5	c.C288A	p.I96I	CTCCTCGATGAAG		96	3	0.03	174	0	0		104		192	0	0				T	46355581	G	T	46355581	2	4	33	1	0	0	0	0	0	0	0	1	15495	1048	37	1		1	SYMPK	19	46355581	Silent	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	5644526	46355581	12773402	63	2295											
MYH14	79784	mdanderson.org	37	chr19	50728869	50728869	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagcggcagctgcttcagGccaaccccatcctagaggcc	12	15	1	1	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_001077186	exon7	c.G745T	p.A249S	CTTCAGGCCAACC		38	3	0.08	55	0	0				25	0	0				T	50728869	G	T	50728869	3	4	33	1	0	0	0	0	1	0	0	0	10080	1203	42	2	767	2	MYH14	19	50728869	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	4373288	50728869	8400114	64	2296											
ZNRF3	84133	mdanderson.org	37	chr22	29439337	29439337	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccggtggtgtatgtgaaGggtgcagatgccattaagct	16	6	0	2	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_001206998	exon4	c.G552T	p.K184N	TGTGAAGGGTGCA		37	3	0.08	63	0	0				44	0	0				T	29439337	G	T	29439337	3	4	33	1	0	0	0	0	1	0	0	0	18254	991	35	3	262	3	ZNRF3	22	29439337	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10		29439337	21865229	65	2297											
CYB5R3	1727	mdanderson.org	37	chr22	43019864	43019864	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgttcctgagttcctccaGctcaggtcgcagcaggatgt	11	11	1	1	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_001171660	exon8	c.C763A	p.L255M	CCTCCAGCTCAGG		52	3	0.06	90	0	0				352	0	0				T	43019864	G	T	43019864	3	4	33	1	0	0	0	0	1	0	0	0	4151	962	34	2	249	2	CYB5R3	22	43019864	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	13580527	43019864	8284702	66	2298											
PIM3	415116	mdanderson.org	37	chr22	50356646	50356646	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcagagcggccgtcgctGgatcagattgcggcccatcc	12	16	2	2	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_001001852	exon6	c.G852T	p.L284L	GTCGCTGGATCAG		41	3	0.07	47	0	0				64	0	0				T	50356646	G	T	50356646	2	4	33	1	0	0	0	0	0	0	0	1	11976	1335	47	3		3	PIM3	22	50356646	Silent	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	7336782	50356646	947920	67	2299											
PLXNB2	23654	bcgsc.ca	37	chr22	50719062	50719062	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaagtagaccttggcgcggGccgagaactcccgctggttc	14	13	0	2	rs200418278	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	PLXNB2	NM_012401	exon25	c.C4031A	p.A1344D	GCGCGGGCCGAGA		39	4	0.1	70	0	0		172		234	0	0				T	50719062	G	T	50719062	3	4	33	1	0	0	0	0	1	0	0	0	12171	1203	42	2	1537	2	PLXNB2	22	50719062	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	362416	50719062	585504	68	2300											
DMD	1756	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	32456429	32456429	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gattagctcatccatgactcCgccatctgttagggtctgtg	10	11	3	1	rs146880270		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	DMD	NM_004006	exon29	c.G4000A	p.G1334R	TGACTCCGCCATC		232	94	0.41	234	1	0.0042735043		2127		24	12	0.5				T	32456429	C	T	32456429	3	4	33	1	0	0	0	0	1	0	0	0	4608	661	23	1	7504	1	DMD	23	32456429	Missense_Mutation	SNP	C	TCGA-2G-AAGM-01A-11D-A42Y-10		32456429	122814131	69	2301											
FGD1	2245	mdanderson.org	37	chrX	54497049	54497049	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caatcagtgaggatactgctGcagaactggggctggcctct	13	10	2	2	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_004463	exon3	c.C626T	p.A209V	ACTGCTGCAGAAC		51	3	0.06	43	0	0				82	0	0				A	54497049	G	A	54497049	3	1	33	1	0	0	0	0	1	0	0	0	5864	1319	46	2	2323	2	FGD1	23	54497049	Missense_Mutation	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	22040620	54497049	100773511	70	2302											
AIFM1	9131	broad.mit.edu	37	chrX	129264042	129264042	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgacacctttgccgtagtccTccccctggacgggagcctgt	11	15	0	1	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	AIFM1	NM_004208	exon15	c.A1673G	p.E558G	TAGTCCTCCCCCT		189	5	0.03	155	4	0.0258064516		75		302	1	0				C	129264042	T	C	129264042	3	2	33	1	0	0	0	0	1	0	0	0	423	1551	54	4	176	4	AIFM1	23	129264042	Missense_Mutation	SNP	T	TCGA-2G-AAGM-01A-11D-A42Y-10	74766993	129264042	26006518	71	2303											
CDR1	1038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	139866052	139866052	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaacaatccaagtcttccGgataatttgggtcttcctga	7	12	2	1	rs146276960		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	.	NM_004065	exon1	c.C480T	p.S160S	TCTTCCGGATAAT		423	108	0.26	349	0	0	0			4	2	0.5				A	139866052	G	A	139866052	2	1	33	1	0	0	0	0	0	0	0	1	3193	1103	39	1		1	CDR1	23	139866052	Silent	SNP	G	TCGA-2G-AAGM-01A-11D-A42Y-10	10602010	139866052	15404508	72	2304											
MAMLD1	10046	bcgsc.ca	37	chrX	149639635	149639635	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cactgccaccttgcagctgcAgcagcagcagcagcaacagc	10	16	0	0	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	MAMLD1	NM_005491	exon3	c.A1790T	p.Q597L	AGCTGCAGCAGCA		204	8	0.04	130	1	0.0076923077		263		15	0	0				T	149639635	A	T	149639635	3	4	33	1	0	0	0	0	1	0	0	0	9257	188	7	5	1800	5	MAMLD1	23	149639635	Missense_Mutation	SNP	A	TCGA-2G-AAGM-01A-11D-A42Y-10	9773583	149639635	5630925	73	2305											
GABRE	2564	broad.mit.edu	37	chrX	151138734	151138734	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaggcttctggcagtttgCcaactctgctcccagtctca	10	13	3	1	novel		TCGA-2G-AAGM-01A-11D-A42Y-10	TCGA-2G-AAGM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	eed38dd0-aca9-4db2-aca6-355ce6cd8537	ae823486-841b-41c3-91e4-0046a66ca6c0	.	GABRE	NM_004961	exon2	c.G197A	p.G66D	AGTTTGCCAACTC		237	6	0.03	210	0	0		141		3	0	0				T	151138734	C	T	151138734	3	4	33	1	0	0	0	0	1	0	0	0	6204	739	26	2	1355	2	GABRE	23	151138734	Missense_Mutation	SNP	C	TCGA-2G-AAGM-01A-11D-A42Y-10	1499099	151138734	4131826	74	2306											
GON4L	54856	mdanderson.org	37	chr1	155721600	155721600	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agctgctgggagatgatgttGaaggtctgtggctgtgcccc	16	8	1	3	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	GON4L_ENST00000437809,lower_third,carcinoma,0,2	GON4L_ENST00000437809	NM_001037533	exon31	c.C6531A	p.F2177L	GATGTTGAAGGTC		81	4	0.05	73	0	0		0	2	153	0	0				T	155721600	G	T	155721600	3	4	34	1	0	0	0	0	1	0	0	0	6610	1281	45	3	199	3	GON4L	1	155721600	Missense_Mutation	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10		155721600	93529021	1	2307											
PCP4L1	654790	broad.mit.edu	37	chr1	161254255	161254255	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgatttcagaaaaggaaaaAggatcccagctcctgaatgg	11	8	1	2	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	PCP4L1	NM_001102566	exon3	c.A191G	p.K64R	GGAAAAAGGATCC		392	5	0.01	396	0	0		7		5	0	0				G	161254255	A	G	161254255	3	3	34	1	0	0	0	0	1	0	0	0	11645	72	3	4	201	4	PCP4L1	1	161254255	Missense_Mutation	SNP	A	TCGA-2G-AAGN-01A-11D-A42Y-10	5532655	161254255	87996366	2	2308											
RGPD2	729857	broad.mit.edu	37	chr2	88125234	88125234	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtaccgctccccgtaggcTttgctgcgcctcatcgcacc	10	17	1	0	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	RGPD2	NM_001078170	exon1	c.A15G	p.K5K	GTAGGCTTTGCTG		71	8	0.11	66	1	0.0151515152		14		0	0					C	88125234	T	C	88125234	2	2	34	1	0	0	0	0	0	0	0	1	13337	1606	56	4		4	RGPD2	2	88125234	Silent	SNP	T	TCGA-2G-AAGN-01A-11D-A42Y-10		88125234	155074139	3	2309											
ANKMY1	51281	mdanderson.org	37	chr2	241492364	241492364	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcttcatgtacatggtgccGtagccttctcggtggctgag	13	10	3	1	rs202087165	by1000genomes	TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_017844	exon4	c.C447T	p.Y149Y	GGTGCCGTAGCCT		56	3	0.05	60	0	0	0			5	0	0				A	241492364	G	A	241492364	2	1	34	1	0	0	0	0	0	0	0	1	630	1140	40	1		1	ANKMY1	2	241492364	Silent	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10	153367130	241492364	1707009	4	2310											
LRRC66	339977	mdanderson.org	37	chr4	52861268	52861268	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcagcccttgccccggaCagccttggctgctgtatgct	10	16	1	0	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001024611	exon4	c.G1920A	p.L640L	CCCGGACAGCCTT		53	3	0.06	87	0	0				0	0					T	52861268	C	T	52861268	2	4	34	1	0	0	0	0	0	0	0	1	9062	465	17	3		3	LRRC66	4	52861268	Silent	SNP	C	TCGA-2G-AAGN-01A-11D-A42Y-10		52861268	138293008	5	2311											
HERC6	55008	mdanderson.org	37	chr4	89338644	89338644	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cagatgcttaaagcagccatCatctctcagctgcttcatca	6	13	5	1	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_017912	exon13	c.C1626T	p.I542I	AGCCATCATCTCT		40	3	0.08	75	0	0				8	0	0				T	89338644	C	T	89338644	2	4	34	1	0	0	0	0	0	0	0	1	7102	816	29	3		3	HERC6	4	89338644	Silent	SNP	C	TCGA-2G-AAGN-01A-11D-A42Y-10	36477376	89338644	101815632	6	2312											
FTMT	94033	mdanderson.org	37	chr5	121187687	121187687	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcttcaggctcctctccaGgcacatcagcccttcgctgg	9	17	3	0	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_177478	exon1	c.G29T	p.R10M	TCTCCAGGCACAT		24	3	0.13	22	0	0				0	0					T	121187687	G	T	121187687	3	4	34	1	0	0	0	0	1	0	0	0	6119	1000	35	3	31	3	FTMT	5	121187687	Missense_Mutation	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10		121187687	59727573	7	2313											
HIST1H2BJ	8970	broad.mit.edu	37	chr6	27100492	27100492	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaccgccttcttggagcccTttttcggggcgggagcagac	13	13	2	1	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	HIST1H2BJ,NS,carcinoma,+1,1	HIST1H2BJ	NM_021058	exon1	c.A38G	p.K13R	GAGCCCTTTTTCG		136	4	0.03	109	0	0		21	1	5	0	0				C	27100492	T	C	27100492	3	2	34	1	0	0	0	0	1	0	0	0	7189	1609	56	4	346	4	HIST1H2BJ	6	27100492	Missense_Mutation	SNP	T	TCGA-2G-AAGN-01A-11D-A42Y-10		27100492	144014575	8	2314											
TREML2	79865	hgsc.bcm.edu	37	chr6	41166123	41166123	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcacagacagagtctcccCttcaaggagcctcacttttg	8	14	3	2	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_024807	exon2	c.G100A	p.G34R	TCTCCCCTTCAAG		57	4	0.07	63	0	0				2	0	0				T	41166123	C	T	41166123	3	4	34	1	0	0	0	0	1	0	0	0	16533	681	24	3	881	3	TREML2	6	41166123	Missense_Mutation	SNP	C	TCGA-2G-AAGN-01A-11D-A42Y-10	14065631	41166123	129948944	9	2315											
SLC22A7	10864	mdanderson.org	37	chr6	43266352	43266352	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cctgcctccgctttgcctatCcccaggctctccccaacacc	5	22	1	0	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_153320	exon1	c.C256T	p.P86S	GCCTATCCCCAGG		52	3	0.06	51	0	0				0	0					T	43266352	C	T	43266352	3	4	34	1	0	0	0	0	1	0	0	0	14513	855	30	3	258	3	SLC22A7	6	43266352	Missense_Mutation	SNP	C	TCGA-2G-AAGN-01A-11D-A42Y-10	2100229	43266352	127848715	10	2316											
HMGN3	9324	broad.mit.edu	37	chr6	79912054	79912054	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcctttccagcttcctgcTtttcctccttcttcccttta	2	17	1	0	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	HMGN3	NM_001201362	exon5	c.A200G	p.K67R	TCCTGCTTTTCCT		99	4	0.04	126	0	0		8		587	0	0				C	79912054	T	C	79912054	3	2	34	1	0	0	0	0	1	0	0	0	7276	1609	56	4	107	4	HMGN3	6	79912054	Missense_Mutation	SNP	T	TCGA-2G-AAGN-01A-11D-A42Y-10	36645702	79912054	91203013	11	2317											
HTR1E	3354	hgsc.bcm.edu	37	chr6	87725676	87725676	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tattaccggatttaccacgcGgccaagagcctttaccagaa	8	12	0	2	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	HTR1E,NS,carcinoma,+1,4	HTR1E	NM_000865	exon2	c.G624T	p.A208A	CCACGCGGCCAAG		98	4	0.04	118	0	0		1	4	0	0					T	87725676	G	T	87725676	2	4	34	1	0	0	0	0	0	0	0	1	7482	1103	39	1		1	HTR1E	6	87725676	Silent	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10	7813622	87725676	83389391	12	2318											
MAD1L1	8379	mdanderson.org	37	chr7	1976498	1976498	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtggggttcaggctcatGtgcagcactttggtcctgct	14	10	2	0	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_003550	exon17	c.C1632A	p.H544Q	GCTCATGTGCAGC		52	3	0.06	71	0	0				106	0	0				T	1976498	G	T	1976498	3	4	34	1	0	0	0	0	1	0	0	0	9192	1368	48	3	536	3	MAD1L1	7	1976498	Missense_Mutation	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10		1976498	157162165	13	2319											
RADIL	55698	mdanderson.org	37	chr7	4841526	4841526	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccccctcaagggaagagtaCgctccggggccacttcccgg	12	17	1	1	rs199920495	bycluster;by1000genomes	TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_018059	exon12	c.G2600A	p.R867H	AGAGTACGCTCCG		71	4	0.06	81	0	0	0			17	0	0				T	4841526	C	T	4841526	3	4	34	1	0	0	0	0	1	0	0	0	13048	536	19	1	643	1	RADIL	7	4841526	Missense_Mutation	SNP	C	TCGA-2G-AAGN-01A-11D-A42Y-10	2865028	4841526	154297137	14	2320											
PHKG1	5260	mdanderson.org	37	chr7	56148879	56148879	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtaggcgtcgatgagccgGcgcagaggccggagggcata	19	10	0	2	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001258459	exon11	c.C1128A	p.R376R	GAGCCGGCGCAGA		48	3	0.06	50	0	0				0	0					T	56148879	G	T	56148879	2	4	34	1	0	0	0	0	0	0	0	1	11893	1190	42	2		2	PHKG1	7	56148879	Silent	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10	51307353	56148879	102989784	15	2321											
ANK1	286	broad.mit.edu;mdanderson.org	37	chr8	41575645	41575645	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggtgaccgcgtcgatcgaGgctcccgtcttcagcagcag	13	14	2	1	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	ANK1	NM_001142446	exon11	c.C1284T	p.A428A	GATCGAGGCTCCC		48	4	0.08	42	1	0.0238095238		497		13	1	0.08				A	41575645	G	A	41575645	2	1	34	1	0	0	0	0	0	0	0	1	616	987	35	3		3	ANK1	8	41575645	Silent	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10		41575645	104788377	16	2322											
ARHGAP39	80728	mdanderson.org	37	chr8	145830925	145830925	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtcggctccttaccgagtGttcgaccctggaatcctcga	11	14	0	0	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_025251	exon3	c.C75A	p.N25K	CCGAGTGTTCGAC		42	3	0.07	55	0	0				22	0	0				T	145830925	G	T	145830925	3	4	34	1	0	0	0	0	1	0	0	0	881	1368	48	3	3313	3	ARHGAP39	8	145830925	Missense_Mutation	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10	104255280	145830925	533097	17	2323											
CCBL1	883	mdanderson.org	37	chr9	131598073	131598073	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcacctggctctgcgtgggGcagtggaagacggagttctg	16	9	3	1	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	CCBL1,NS,carcinoma,-2,1	CCBL1	NM_001122671	exon9	c.C840T	p.C280C	CGTGGGGCAGTGG		36	3	0.08	45	1	0.0222222222		-2	1	2	0	0				A	131598073	G	A	131598073	2	1	34	1	0	0	0	0	0	0	0	1	2750	1195	42	2		2	CCBL1	9	131598073	Silent	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10		131598073	9615358	18	2324											
REXO4	57109	mdanderson.org	37	chr9	136277900	136277900	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctgagaccagcgtacccGccgaaggcctgctctttcac	9	17	2	1	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_020385	exon3	c.C714A	p.G238G	GTACCCGCCGAAG		23	2	0.09	20	0	0				103	0	0				T	136277900	G	T	136277900	2	4	34	1	0	0	0	0	0	0	0	1	13294	1074	38	1		1	REXO4	9	136277900	Silent	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10	4679827	136277900	4935531	19	2325											
NMT2	9397	mdanderson.org	37	chr10	15210531	15210531	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctccgtctcctcctcattGtccccgtctatcccgcacgt	6	19	3	0	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_004808	exon1	c.C81A	p.D27E	CTCATTGTCCCCG		43	4	0.09	44	0	0				15	0	0				T	15210531	G	T	15210531	3	4	34	1	0	0	0	0	1	0	0	0	10550	1368	48	3	1463	3	NMT2	10	15210531	Missense_Mutation	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10		15210531	120324216	20	2326											
IFIT3	3437	mdanderson.org	37	chr10	91098885	91098885	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatgaaagggcgaaggtgtGttttgagaaggctctggaag	16	3	1	2	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001031683	exon2	c.G473T	p.C158F	AGGTGTGTTTTGA		36	3	0.08	45	0	0				57	0	0				T	91098885	G	T	91098885	3	4	34	1	0	0	0	0	1	0	0	0	7567	1377	48	3	488	3	IFIT3	10	91098885	Missense_Mutation	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10	75888354	91098885	44435862	21	2327											
DOCK1	1793	mdanderson.org	37	chr10	129249688	129249688	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggactccgggatcgtgcaGtgacgtcgcaagcctctctg	14	12	1	1	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001380	exon52	c.G5595T	p.Q1865H	CGTGCAGTGACGT		41	3	0.07	25	0	0				26	0	0				T	129249688	G	T	129249688	3	4	34	1	0	0	0	0	1	0	0	0	4711	1020	36	3	5801	3	DOCK1	10	129249688	Missense_Mutation	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10	38150803	129249688	6285059	22	2328											
TSPAN4	7106	mdanderson.org	37	chr11	864455	864455	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agttcttcctgctgctgctgCtggtgttcctgctggaggcc	13	12	1	0	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	TSPAN4,NS,carcinoma,0,1	TSPAN4	NM_001025237	exon5	c.C274G	p.L92V	CTGCTGCTGGTGT		42	3	0.07	40	0	0		0	1	112	1	0.01				G	864455	C	G	864455	3	3	34	1	0	0	0	0	1	0	0	0	16709	796	28	5	284	5	TSPAN4	11	864455	Missense_Mutation	SNP	C	TCGA-2G-AAGN-01A-11D-A42Y-10		864455	134142061	23	2329											
MUC6	4588	mdanderson.org	37	chr11	1029349	1029349	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgctccgtgcacacccagCggcccagggtgcaccggctg	14	18	0	0	rs201771202	bycluster	TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_005961	exon10	c.G1154A	p.R385H	ACCCAGCGGCCCA		25	2	0.08	48	0	0				0	0					T	1029349	C	T	1029349	3	4	34	1	0	0	0	0	1	0	0	0	10027	768	27	1	6261	1	MUC6	11	1029349	Missense_Mutation	SNP	C	TCGA-2G-AAGN-01A-11D-A42Y-10	164894	1029349	133977167	24	2330											
MRGPRF	116535	mdanderson.org	37	chr11	68773371	68773371	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcagcgctcggcgctgacgGccggcaggaggctcacgccg	17	16	1	1	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001098515	exon3	c.C407A	p.A136D	CTGACGGCCGGCA		17	2	0.12	30	0	0				8	0	0				T	68773371	G	T	68773371	3	4	34	1	0	0	0	0	1	0	0	0	9813	1203	42	2	628	2	MRGPRF	11	68773371	Missense_Mutation	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10	67744022	68773371	66233145	25	2331											
FOLR3	2352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	71850732	71850732	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggagccactccttcaagGtcagcaactatagtcgaggg	11	11	3	0	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	.	.	.	.	TTCAAGGTCAGCA		185	49	0.26	161	0	0				2	1	0.5				T	71850732	G	T	71850732	3	4	34	1	0	0	0	0	1	0	0	0	6015	1261	44	3	607	3	FOLR3	11	71850732	Missense_Mutation	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10	3077361	71850732	63155784	26	2332											
GAB2	9846	ucsc.edu;bcgsc.ca	37	chr11	77938073	77938073	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatgagaaaagaggctctGgtgccctgagagaagctggc	14	9	2	4	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	GAB2	NM_080491	exon4	c.C645A	p.T215T	GGCTCTGGTGCCC		24	4	0.17	49	0	0		63		1	0	0				T	77938073	G	T	77938073	2	4	34	1	0	0	0	0	0	0	0	1	6183	1335	47	3		3	GAB2	11	77938073	Silent	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10	6087341	77938073	57068443	27	2333											
ERC1	23085	broad.mit.edu	37	chr12	1292505	1292505	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcatcctcaggactgaaaaAggactcacggcttaagacac	10	11	2	2	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	ERC1	NM_178040	exon11	c.A2075G	p.K692R	TGAAAAAGGACTC		737	7	0.01	382	2	0.0052356021		95		48	0	0				G	1292505	A	G	1292505	3	3	34	1	0	0	0	0	1	0	0	0	5238	72	3	4	2113	4	ERC1	12	1292505	Missense_Mutation	SNP	A	TCGA-2G-AAGN-01A-11D-A42Y-10		1292505	132559390	28	2334											
C12orf42	374470	mdanderson.org	37	chr12	103696285	103696285	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgctctgcagagcgccgggCgtctggctcctcctgcagag	15	14	2	2	rs180791755	bycluster;by1000genomes	TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001099336	exon6	c.G684A	p.T228T	GCCGGGCGTCTGG		50	3	0.06	32	0	0	0			1	0	0				T	103696285	C	T	103696285	2	4	34	1	0	0	0	0	0	0	0	1	1694	755	27	1		1	C12orf42	12	103696285	Silent	SNP	C	TCGA-2G-AAGN-01A-11D-A42Y-10	102403780	103696285	30155610	29	2335											
PCDH8	5100	mdanderson.org	37	chr13	53420974	53420974	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcctccagcagccggtagGtgacctggccgttgcggccc	15	16	0	1	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_002590	exon1	c.C1598A	p.T533N	CGGTAGGTGACCT		17	2	0.12	32	0	0				0	0					T	53420974	G	T	53420974	3	4	34	1	0	0	0	0	1	0	0	0	11563	1261	44	3	1626	3	PCDH8	13	53420974	Missense_Mutation	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10		53420974	61748904	30	2336											
PAPLN	89932	mdanderson.org	37	chr14	73717653	73717653	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctggactcgtccaagcaGgaggacaagtgtctgcggtg	16	9	1	0	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_173462	exon7	c.G504T	p.Q168H	CAAGCAGGAGGAC		48	3	0.06	40	0	0				1	0	0				T	73717653	G	T	73717653	3	4	34	1	0	0	0	0	1	0	0	0	11474	991	35	3	526	3	PAPLN	14	73717653	Missense_Mutation	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10		73717653	33631887	31	2337											
C14orf80	283643	mdanderson.org	37	chr14	105964251	105964251	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacctggtagtgcgggagctGcaggcactggaggaggagct	19	8	0	0	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001134875	exon7	c.G888A	p.L296L	GGAGCTGCAGGCA		43	3	0.07	42	1	0.0238095238				153	0	0				A	105964251	G	A	105964251	2	1	34	1	0	0	0	0	0	0	0	1	1787	1306	46	2		2	C14orf80	14	105964251	Silent	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10	32246598	105964251	1385289	32	2338											
SPTBN5	51332	mdanderson.org	37	chr15	42147796	42147796	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctgctgtctgctgcagccGctcgatgcgtgggctgaacg	15	12	1	1	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_016642	exon54	c.C9064T	p.R3022W	GCAGCCGCTCGAT		55	3	0.05	46	0	0				5	0	0				A	42147796	G	A	42147796	3	1	34	1	0	0	0	0	1	0	0	0	15177	1086	38	1	1915	1	SPTBN5	15	42147796	Missense_Mutation	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10		42147796	60383596	33	2339											
TGM7	116179	broad.mit.edu	37	chr15	43571977	43571977	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accctctggatacgcagcagCagctgcaggtcctggcccca	11	16	1	0	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	TGM7,NS,carcinoma,0,2	TGM7	NM_052955	exon10	c.G1524T	p.L508L	CAGCAGCAGCTGC		57	6	0.11	41	3	0.0731707317		86	2	0	0					A	43571977	C	A	43571977	2	1	34	1	0	0	0	0	0	0	0	1	15894	697	25	2		2	TGM7	15	43571977	Silent	SNP	C	TCGA-2G-AAGN-01A-11D-A42Y-10	1424181	43571977	58959415	34	2340											
CLK3	1198	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr15	74911680	74911680	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcccccacgaagatctcGgtccagaaggtgagagggaa	13	12	1	3	rs183588535	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001130028	exon2	c.G587T	p.R196L	GATCTCGGTCCAG		80	4	0.05	87	0	0				102	0	0				T	74911680	G	T	74911680	3	4	34	1	0	0	0	0	1	0	0	0	3561	1116	39	1	593	1	CLK3	15	74911680	Missense_Mutation	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10	31339703	74911680	27619712	35	2341											
TTLL13	440307	mdanderson.org	37	chr15	90793911	90793911	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aatcagaggaagactatgttGaggaaaaggaatctgagaag	13	3	2	4	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001029964	exon2	c.G49T	p.E17X	TATGTTGAGGAAA		90	5	0.06	69	1	0.0144927536				0	0					T	90793911	G	T	90793911	4	4	34	1	0	0	0	0	0	1	0	0	16787	1291	45	3	51	3	TTLL13	15	90793911	Nonsense_Mutation	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10	15882231	90793911	11737481	36	2342											
SEPHS2	22928	mdanderson.org	37	chr16	30456678	30456678	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcccccgtgcctcagggggAtgacgcaggagtccatcccg	15	15	1	1	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	.	.	.	.	AGGGGGATGACGC		44	3	0.07	36	0	0				253	1	0				G	30456678	A	G	30456678	3	3	34	1	0	0	0	0	1	0	0	0	14108	333	12	4	979	4	SEPHS2	16	30456678	Missense_Mutation	SNP	A	TCGA-2G-AAGN-01A-11D-A42Y-10		30456678	59898075	37	2343											
CBFA2T3	863	mdanderson.org	37	chr16	88943658	88943658	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agccgctgcacgtctcactgGctttccgcccgcagttccag	10	17	1	0	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_005187	exon12	c.C1688A	p.A563D	TCACTGGCTTTCC		45	3	0.07	40	0	0				5	0	0				T	88943658	G	T	88943658	3	4	34	1	0	0	0	0	1	0	0	0	2716	1203	42	2	277	2	CBFA2T3	16	88943658	Missense_Mutation	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10	58486980	88943658	1411095	38	2344											
SPEM1	374768	broad.mit.edu	37	chr17	7324624	7324624	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtatcctgtgaaccccccAcctcccagccctgaggctcc	8	19	0	2	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	SPEM1	NM_199339	exon3	c.A630C	p.P210P	CCCCCCACCTCCC		67	17	0.25	68	13	0.1911764706		41		0	0					C	7324624	A	C	7324624	2	2	34	1	0	0	0	0	0	0	0	1	15092	146	6	4		4	SPEM1	17	7324624	Silent	SNP	A	TCGA-2G-AAGN-01A-11D-A42Y-10		7324624	73870586	39	2345											
LRRC37A3	374819	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr17	62892947	62892947	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agcttcttgggcgaaacaggGagcctttcctgtggactcag	13	10	2	0	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_199340	exon3	c.C429T	p.L143L	AACAGGGAGCCTT		695	53	0.08	643	0	0				0	0					A	62892947	G	A	62892947	2	1	34	1	0	0	0	0	0	0	0	1	9037	1161	41	3		3	LRRC37A3	17	62892947	Silent	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10	55568323	62892947	18302263	40	2346											
ABCA6	23460	mdanderson.org	37	chr17	67084386	67084386	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaaaaacgaatagcaaaGtctgaaagtagggctatgag	11	5	1	2	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_080284	exon28	c.C3620A	p.T1207N	AGCAAAGTCTGAA		53	3	0.06	53	0	0				0	0					T	67084386	G	T	67084386	3	4	34	1	0	0	0	0	1	0	0	0	36	1029	36	3	1281	3	ABCA6	17	67084386	Missense_Mutation	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10	4191439	67084386	14110824	41	2347											
TSPAN10	83882	mdanderson.org	37	chr17	79612324	79612324	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggaagtgatctgggggggCccctgcccgcagaccccatg	16	13	1	2	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	TSPAN10_ENST00000328585,caecum,carcinoma,0,1	TSPAN10_ENST00000328585	.	.	.	.	GGGGGGCCCCTGC		35	3	0.09	38	0	0		0	1	0	0					G	79612324	C	G	79612324	3	3	34	1	0	0	0	0	1	0	0	0	16694	739	26	5	349	5	TSPAN10	17	79612324	Missense_Mutation	SNP	C	TCGA-2G-AAGN-01A-11D-A42Y-10	12527938	79612324	1582886	42	2348											
ROCK1	6093	mdanderson.org	37	chr18	18600140	18600140	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgctccatttcatcttttaActgcatttcattatgcagct	4	11	3	0	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_005406	exon12	c.T1333A	p.L445I	CTTTTAACTGCAT		27	3	0.11	65	0	0				17	0	0				T	18600140	A	T	18600140	3	4	34	1	0	0	0	0	1	0	0	0	13568	40	2	5	2819	5	ROCK1	18	18600140	Missense_Mutation	SNP	A	TCGA-2G-AAGN-01A-11D-A42Y-10		18600140	59477108	43	2349											
FAM108A1	81926	hgsc.bcm.edu	37	chr19	1881395	1881395	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgggtgcgcccgaggaggcTctcagggtccccaagggggc	18	14	1	0	rs199929215	byfrequency	TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	FAM108A1,NS,carcinoma,0,3	FAM108A1	NM_031213	exon2	c.A171G	p.R57R	GGAGGCTCTCAGG		14	5	0.36	14	1	0.0714285714	0.01	0	3	63	1	0.02				C	1881395	T	C	1881395	2	2	34	1	0	0	0	0	0	0	0	1	5422	1548	54	4		4	FAM108A1	19	1881395	Silent	SNP	T	TCGA-2G-AAGN-01A-11D-A42Y-10		1881395	57247588	44	2350											
SEMA6B	10501	mdanderson.org	37	chr19	4555021	4555021	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagtcatgtttcacggtgcGcagggtgggcctgtccccga	16	11	2	0	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_032108	exon8	c.C649T	p.R217C	CGGTGCGCAGGGT		56	3	0.05	76	0	0				33	0	0				A	4555021	G	A	4555021	3	1	34	1	0	0	0	0	1	0	0	0	14093	1087	38	1	2057	1	SEMA6B	19	4555021	Missense_Mutation	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10	2673626	4555021	54573962	45	2351											
KANK2	25959	mdanderson.org	37	chr19	11303936	11303936	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaggcatgcccaagtcccGttctcgaacccaggtgccca	9	16	2	0	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_015493	exon2	c.C820A	p.R274R	AGTCCCGTTCTCG		26	2	0.08	30	0	0				8	0	0				T	11303936	G	T	11303936	2	4	34	1	0	0	0	0	0	0	0	1	8020	1144	40	1		1	KANK2	19	11303936	Silent	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10	6748915	11303936	47825047	46	2352											
WIZ	58525	mdanderson.org	37	chr19	15535768	15535768	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacgccgaactgccgcaggTgtgcccgtgcgtggctggcc	15	15	1	0	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_021241	exon6	c.A1685G	p.H562R	CGCAGGTGTGCCC		45	5	0.11	45	0	0				59	0	0				C	15535768	T	C	15535768	3	2	34	1	0	0	0	0	1	0	0	0	17434	1696	59	4	711	4	WIZ	19	15535768	Missense_Mutation	SNP	T	TCGA-2G-AAGN-01A-11D-A42Y-10	4231832	15535768	43593215	47	2353											
ABHD8	79575	mdanderson.org	37	chr19	17405202	17405202	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtagacctcgtcgccctcGggccagtactggccgctcat	12	15	1	1	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_024527	exon4	c.C1044A	p.P348P	GCCCTCGGGCCAG		45	3	0.07	44	0	0				3	0	0				T	17405202	G	T	17405202	2	4	34	1	0	0	0	0	0	0	0	1	87	1103	39	1		1	ABHD8	19	17405202	Silent	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10	1869434	17405202	41723781	48	2354											
PGLS	25796	mdanderson.org	37	chr19	17622540	17622540	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagttcccaggagctgggtgCggcgctagcgcagctggtgg	19	10	0	0	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_012088	exon1	c.C59T	p.A20V	TGGGTGCGGCGCT		21	2	0.1	20	0	0				31	0	0				T	17622540	C	T	17622540	3	4	34	1	0	0	0	0	1	0	0	0	11839	768	27	1	61	1	PGLS	19	17622540	Missense_Mutation	SNP	C	TCGA-2G-AAGN-01A-11D-A42Y-10	217338	17622540	41506443	49	2355											
MLL4	8085	mdanderson.org	37	chr19	36219739	36219739	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctatgcgcagtggagacagCaggaaccagagaccccagaa	12	11	1	3	rs369588398	alternate_allele	TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_014727	exon20	c.C4636T	p.Q1546X	AGACAGCAGGAAC		63	4	0.06	101	0	0				44	0	0				T	36219739	C	T	36219739	4	4	34	1	0	0	0	0	0	1	0	0	9670	711	25	2	4714	2	MLL4	19	36219739	Nonsense_Mutation	SNP	C	TCGA-2G-AAGN-01A-11D-A42Y-10	18597199	36219739	22909244	50	2356											
LRFN1	57622	broad.mit.edu	37	chr19	39804795	39804795	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcggggcagccggcgggggTgccatcagaggcagaggtac	21	10	1	2	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	LRFN1,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	LRFN1	NM_020862	exon1	c.A1182C	p.A394A	CGGGGGTGCCATC		36	8	0.22	48	7	0.1458333333		59	1	3	0	0				G	39804795	T	G	39804795	2	3	34	1	0	0	0	0	0	0	0	1	8981	1683	59	4		4	LRFN1	19	39804795	Silent	SNP	T	TCGA-2G-AAGN-01A-11D-A42Y-10	3585056	39804795	19324188	51	2357											
TPRX1	284355	broad.mit.edu	37	chr19	48305622	48305622	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgggcctgggtttgggcctgAgattgggcctgagattgggc	19	8	0	2	rs201007421		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	TPRX1,caecum,carcinoma,0,2	TPRX1	NM_198479	exon2	c.T646C	p.S216P	GGCCTGAGATTGG		30	4	0.13	43	1	0.023255814		46	2	5	0	0				G	48305622	A	G	48305622	3	3	34	1	0	0	0	0	1	0	0	0	16482	304	11	4	593	4	TPRX1	19	48305622	Missense_Mutation	SNP	A	TCGA-2G-AAGN-01A-11D-A42Y-10	8500827	48305622	10823361	52	2358											
HAS1	3036	mdanderson.org	37	chr19	52216945	52216945	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cggccagcttccgccggcccGaggtgccccagccactctgg	13	19	1	0	rs367672882	alternate_allele	TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_001523	exon5	c.C1472A	p.S491X	CGGCCCGAGGTGC		32	3	0.09	35	0	0				6	0	0				T	52216945	G	T	52216945	4	4	34	1	0	0	0	0	0	1	0	0	7001	1059	37	1	268	1	HAS1	19	52216945	Nonsense_Mutation	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10	3911323	52216945	6912038	53	2359											
ZNF547	284306	broad.mit.edu	37	chr19	57888687	57888687	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cacaccccgagcagggactgTacacgtgtccagcacatctt	9	15	1	0	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	ZNF547	NM_173631	exon4	c.T343C	p.Y115H	GGACTGTACACGT		138	3	0.02	151	0	0		45		1	0	0				C	57888687	T	C	57888687	3	2	34	1	0	0	0	0	1	0	0	0	18035	1638	57	4	353	4	ZNF547	19	57888687	Missense_Mutation	SNP	T	TCGA-2G-AAGN-01A-11D-A42Y-10	5671742	57888687	1240296	54	2360											
RRBP1	6238	bcgsc.ca	37	chr20	17639827	17639827	+	Silent	SNP	G	G	A													ccctggttctgggccccctcGgccttcttgccctggttctg					novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	RRBP1	.	.	.	.	CCCCTCGGCCTTC		213	10	0.05	224	2	0.0089285714		157		748	9	0.01				A	17639827	G	A	17639827	2	1	34	1	0	0	0	0	0	0	0	1	13729	1131	39	1		1	RRBP1	20	17639827	Silent	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10		17639827	45385693	55	2361	6	2									
RRBP1	6238	bcgsc.ca	37	chr20	17639837	17639837	+	Missense_Mutation	SNP	C	C	T													gggccccctcggccttcttgCcctggttctgggccccctcg					rs113442443		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	RRBP1	.	.	.	.	TTCTTGCCCTGGT		206	12	0.06	228	4	0.0175438596		157		637	43	0.07				T	17639837	C	T	17639837	3	4	34	1	0	0	0	0	1	0	0	0	13729	754	26	2		2	RRBP1	20	17639837	Missense_Mutation	SNP	C	TCGA-2G-AAGN-01A-11D-A42Y-10	10	17639837	45385683	56	2362	6	2									
DYRK1A	1859	mdanderson.org	37	chr21	38877888	38877888	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acctccagtacatcgtcaagCtcaggtctgtgctgctgcgg	11	13	3	0	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	NM_101395	exon11	c.C1542A	p.S514R	GTCAAGCTCAGGT		18	2	0.11	23	0	0				37	0	0				A	38877888	C	A	38877888	3	1	34	1	0	0	0	0	1	0	0	0	4880	796	28	2	1576	2	DYRK1A	21	38877888	Missense_Mutation	SNP	C	TCGA-2G-AAGN-01A-11D-A42Y-10		38877888	9252007	57	2363											
MAPK8IP2	23542	mdanderson.org	37	chr22	51044140	51044140	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctacgcccatgcggtgccCggccctgccaaggacctgct	11	17	1	0	rs374360769		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	.	.	.	.	.	GGTGCCCGGCCCT		40	3	0.08	34	0	0				48	0	0				T	51044140	C	T	51044140	2	4	34	1	0	0	0	0	0	0	0	1	9334	639	23	1		1	MAPK8IP2	22	51044140	Silent	SNP	C	TCGA-2G-AAGN-01A-11D-A42Y-10		51044140	260426	58	2364											
TBC1D25	4943	broad.mit.edu	37	chrX	48418342	48418342	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctgtcatggaccatgaggGccatgcctttgtttgctttt	11	10	1	1	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	TBC1D25	NM_002536	exon6	c.G1046T	p.G349V	ATGAGGGCCATGC		41	3	0.07	51	0	0		70		16	0	0				T	48418342	G	T	48418342	3	4	34	1	0	0	0	0	1	0	0	0	15671	1203	42	2	1068	2	TBC1D25	23	48418342	Missense_Mutation	SNP	G	TCGA-2G-AAGN-01A-11D-A42Y-10		48418342	106852218	59	2365											
TMEM185A	84548	broad.mit.edu	37	chrX	148690471	148690471	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaacaagagcaagtggatgCccactgcaatcaacatggct	9	11	2	1	novel		TCGA-2G-AAGN-01A-11D-A42Y-10	TCGA-2G-AAGN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c75867f5-f606-4d61-8abb-24d385f39af4	dd5f28de-d18f-48ec-838e-d8e280234eda	.	TMEM185A	NM_032508	exon3	c.G266A	p.G89D	TGGATGCCCACTG		182	4	0.02	169	0	0		26		17	0	0				T	148690471	C	T	148690471	3	4	34	1	0	0	0	0	1	0	0	0	16166	739	26	2	806	2	TMEM185A	23	148690471	Missense_Mutation	SNP	C	TCGA-2G-AAGN-01A-11D-A42Y-10	100272129	148690471	6580089	60	2366											
OTUD3	23252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	20234139	20234139	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagaggcaccgccacaaagCcctggagagcagaggtagcc	15	12	0	3	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_015207	exon8	c.C1097T	p.A366V	ACAAAGCCCTGGA		96	16	0.17	58	0	0				8	1	0.13				T	20234139	C	T	20234139	3	4	35	1	0	0	0	0	1	0	0	0	11359	739	26	2	1127	2	OTUD3	1	20234139	Missense_Mutation	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10		20234139	229016482	1	2367											
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	150526002	150526002	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaggcaccctcggagcccaCccagatctgagctgtccctg	11	17	1	2	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_019032	exon6	c.C535A	p.P179T	AGCCCACCCAGAT		105	25	0.24	62	0	0				9	4	0.44				A	150526002	C	A	150526002	3	1	35	1	0	0	0	0	1	0	0	0	276	507	18	3	549	3	ADAMTSL4	1	150526002	Missense_Mutation	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10	130291863	150526002	98724619	2	2368											
PGLYRP4	57115	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	153303252	153303252	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tggggcttctctcagtgtttGaaatgaggccaggtgctgat	14	7	2	3	rs41310915	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_020393	exon9	c.C1113G	p.F371L	GTGTTTGAAATGA		166	45	0.27	175	0	0				0	0					C	153303252	G	C	153303252	3	2	35	1	0	0	0	0	1	0	0	0	11843	1281	45	5	12	5	PGLYRP4	1	153303252	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	2777250	153303252	95947369	3	2369											
PEAR1	375033	hgsc.bcm.edu	37	chr1	156875139	156875139	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtataccggaccgtgtaccGtcaggtggtgaagacggacc	14	10	1	2	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	PEAR1,NS,haematopoietic_neoplasm,+1,2	PEAR1	NM_001080471	exon4	c.G230T	p.R77L	TGTACCGTCAGGT		29	20	0.69	15	1	0.0666666667		1	2	1	0	0				T	156875139	G	T	156875139	3	4	35	1	0	0	0	0	1	0	0	0	11758	1145	40	1	240	1	PEAR1	1	156875139	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	3571887	156875139	92375482	4	2370											
LAD1	3898	broad.mit.edu	37	chr1	201356276	201356276	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggctgggggcagtggcttGggcacctctgcttcttccac	15	12	2	0	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	LAD1	NM_005558	exon3	c.C213A	p.P71P	TGGCTTGGGCACC		79	3	0.04	59	0	0		42		44	0	0				T	201356276	G	T	201356276	2	4	35	1	0	0	0	0	0	0	0	1	8637	1335	47	3		3	LAD1	1	201356276	Silent	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	44481137	201356276	47894345	5	2371											
ADSS	159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	244600986	244600986	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accaatgaatgcagtgacatTtggattaattattccactgg	8	7	0	2	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_001126	exon2	c.A268G	p.N90D	TGACATTTGGATT		95	22	0.23	95	0	0				144	48	0.33				C	244600986	T	C	244600986	3	2	35	1	0	0	0	0	1	0	0	0	346	1841	64	4	1150	4	ADSS	1	244600986	Missense_Mutation	SNP	T	TCGA-2G-AAGO-01A-11D-A42Y-10	43244710	244600986	4649635	6	2372											
TRMT61B	55006	mdanderson.org	37	chr2	29093089	29093089	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgcaggaatgaattggttcCgagcccctgccgcaggcaca	13	12	0	1	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_017910	exon1	c.G55C	p.G19R	TGGTTCCGAGCCC		24	3	0.13	23	0	0				66	0	0				G	29093089	C	G	29093089	3	3	35	1	0	0	0	0	1	0	0	0	16630	661	23	5	1406	5	TRMT61B	2	29093089	Missense_Mutation	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10		29093089	214106284	7	2373											
DYSF	8291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	71783195	71783195	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacggatgagctcatcgcagGctgcaggtaggggggacctg	18	9	1	1	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_001130982	exon23	c.G2252T	p.G751V	TCGCAGGCTGCAG		90	28	0.31	78	0	0				46	8	0.17				T	71783195	G	T	71783195	3	4	35	1	0	0	0	0	1	0	0	0	4885	1203	42	2	2434	2	DYSF	2	71783195	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	42690106	71783195	171416178	8	2374											
TEKT4	150483	mdanderson.org	37	chr2	95540628	95540628	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgctggtggactgcatccTtcgcgacacctccgaggacc	13	14	0	0	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_144705	exon4	c.T821C	p.L274P	GCATCCTTCGCGA		24	3	0.13	30	0	0				0	0					C	95540628	T	C	95540628	3	2	35	1	0	0	0	0	1	0	0	0	15813	1609	56	4	835	4	TEKT4	2	95540628	Missense_Mutation	SNP	T	TCGA-2G-AAGO-01A-11D-A42Y-10	23757433	95540628	147658745	9	2375											
FBLN7	129804	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	112896249	112896250	+	Frame_Shift_Del	DEL	CG	CG	-													caagatggtgcccagctctcCgcgcgcgctcttccttctgc					novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	CG	CG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	FBLN7	NM_153214	exon1	c.16_17del	p.6_6del	GCTCTCCGCGCGC		118	19	0.16	123	0	0		49		1	0	0				-	112896250	CG	-	112896249	7	5	35	1	0	1	0	1	0	0	0	0	5733	652	23	0	19	0	FBLN7	2	112896249	Frame_Shift_Del	DEL	CG	TCGA-2G-AAGO-01A-11D-A42Y-10	17355621	112896249	130303124	10	2376											
SMPD4	55627	mdanderson.org	37	chr2	130910298	130910298	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggtaactgcccaggaagcGcaggctgagcctggggccgc	16	14	0	1	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_017951	exon20	c.C2431T	p.R811C	GGAAGCGCAGGCT		70	4	0.06	67	1	0.0149253731				249	0	0				A	130910298	G	A	130910298	3	1	35	1	0	0	0	0	1	0	0	0	14860	1087	38	1	173	1	SMPD4	2	130910298	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	18014049	130910298	112289075	11	2377											
GRB14	2888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	165353738	165353738	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tacccatgtttgtggcagagCtctgtgaagaggcagtgggg	16	7	1	3	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_004490	exon11	c.G1277T	p.S426I	GCAGAGCTCTGTG		188	45	0.24	201	0	0				14	6	0.43				A	165353738	C	A	165353738	3	1	35	1	0	0	0	0	1	0	0	0	6797	797	28	2	361	2	GRB14	2	165353738	Missense_Mutation	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10	34443440	165353738	77845635	12	2378											
CXCR1	3577	hgsc.bcm.edu	37	chr2	219029115	219029115	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggcgctcacagctctcctGgatcacctgggtcctcatga	11	15	4	1	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_000634	exon2	c.C820A	p.Q274K	TCTCCTGGATCAC		119	5	0.04	95	0	0				0	0					T	219029115	G	T	219029115	3	4	35	1	0	0	0	0	1	0	0	0	4113	1357	47	3	236	3	CXCR1	2	219029115	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	53675377	219029115	24170258	13	2379											
SPHKAP	80309	mdanderson.org	37	chr2	228883882	228883882	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagccacggcactggccaccTgagtcatgccacacaaagca	9	16	1	1	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	SPHKAP,larynx,carcinoma,+1,1	SPHKAP	NM_030623	exon7	c.A1688G	p.Q563R	GCCACCTGAGTCA		52	3	0.06	47	0	0		1	1	0	0					C	228883882	T	C	228883882	3	2	35	1	0	0	0	0	1	0	0	0	15103	1580	55	4	3438	4	SPHKAP	2	228883882	Missense_Mutation	SNP	T	TCGA-2G-AAGO-01A-11D-A42Y-10	9854767	228883882	14315491	14	2380											
DIS3L2	129563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	233194705	233194705	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagctccgcaggagccctcaAtgtgagtggtgggcaggatt	15	10	1	1	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_152383	exon15	c.A1922G	p.N641S	CCCTCAATGTGAG		80	26	0.33	80	0	0				20	6	0.3				G	233194705	A	G	233194705	3	3	35	1	0	0	0	0	1	0	0	0	4565	115	4	4	1976	4	DIS3L2	2	233194705	Missense_Mutation	SNP	A	TCGA-2G-AAGO-01A-11D-A42Y-10	4310823	233194705	10004668	15	2381											
CAMKV	79012	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	49899544	49899552	+	In_Frame_Del	DEL	TTCTTGCAG	TTCTTGCAG	-													ggccgtcccgcttctggaacTtcttgcaggtgtgcagcttg					novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	TTCTTGCAG	TTCTTGCAG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	CAMKV	NM_024046	exon3	c.154_162del	p.52_54del	TGGAACTTCTTGC		80	22	0.28	78	0	0		84		68	30	0.44				-	49899552	TTCTTGCAG	-	49899544	7	5	35	1	0	1	0	1	0	0	0	0	2626	1609	56	0	1380	0	CAMKV	3	49899544	In_Frame_Del	DEL	TTCTTGCAG	TCGA-2G-AAGO-01A-11D-A42Y-10		49899544	148122886	16	2382											
STAB1	23166	mdanderson.org	37	chr3	52557127	52557127	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggatgtgctggctgccactGccaacttctccaccttctat	8	14	2	0	rs372724948		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_015136	exon63	c.G6997A	p.A2333T	GCCACTGCCAACT		23	3	0.13	34	0	0				38	0	0				A	52557127	G	A	52557127	3	1	35	1	0	0	0	0	1	0	0	0	15292	1319	46	2	7247	2	STAB1	3	52557127	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	2657583	52557127	145465303	17	2383											
SDAD1	55153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	76882374	76882374	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagcttactcttatccttGtgtgttttatactgagccag	8	9	1	1	rs143777133		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_018115	exon15	c.C1269T	p.H423H	ATCCTTGTGTGTT		117	35	0.3	125	0	0	0			161	70	0.43				A	76882374	G	A	76882374	2	1	35	1	0	0	0	0	0	0	0	1	14003	1368	48	3		3	SDAD1	4	76882374	Silent	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10		76882374	114271902	18	2384											
CTNND2	1501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	11397161	11397161	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acctggctgaagctctggccCgtagctcgggcttgtgtgcc	14	13	1	1	rs61749784	bycluster;byfrequency;by1000genomes	TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_001332	exon6	c.G594A	p.T198T	CTGGCCCGTAGCT		63	24	0.38	50	0	0	0.002			0	0					T	11397161	C	T	11397161	2	4	35	1	0	0	0	0	0	0	0	1	4044	639	23	1		1	CTNND2	5	11397161	Silent	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10		11397161	169518099	19	2385											
NKX2-5	0	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	172659730	172659730	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggcccggcggggtaagCggcagtgcagctgtagccag	19	10	0	0	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	NKX2-5	NM_004387	exon2	c.G817A	p.A273T	GGTAAGCGGCAGT		73	24	0.33	88	1	0.0113636364		42		0	0					T	172659730	C	T	172659730	3	4	35	1	0	0	0	0	1	0	0	0	10499	768	27	1	161	1	NKX2-5	5	172659730	Missense_Mutation	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10	161262569	172659730	8255530	20	2386											
GPRIN1	114787	broad.mit.edu;mdanderson.org	37	chr5	176024694	176024694	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gacggcttggtcttctccagActcagggggaccaccttccc	11	15	3	1	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	GPRIN1	NM_052899	exon2	c.T2142G	p.S714R	CTCCAGACTCAGG		33	8	0.24	35	0	0		77		8	1	0.13				C	176024694	A	C	176024694	3	2	35	1	0	0	0	0	1	0	0	0	6769	272	10	4	888	4	GPRIN1	5	176024694	Missense_Mutation	SNP	A	TCGA-2G-AAGO-01A-11D-A42Y-10	3364964	176024694	4890566	21	2387											
HK3	3101	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr5	176316733	176316733	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gttcaccacagcaaccacgtCgatgttgtaggcctagatga	10	11	1	2	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_002115	exon7	c.G643A	p.D215N	CCACGTCGATGTT		48	7	0.15	49	0	0				2	0	0				T	176316733	C	T	176316733	3	4	35	1	0	0	0	0	1	0	0	0	7232	884	31	1	2180	1	HK3	5	176316733	Missense_Mutation	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10	292039	176316733	4598527	22	2388											
NUP153	9972	mdanderson.org	37	chr6	17688695	17688695	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tattagagctctcctcatcgGcatataccagatggtcctct	7	12	3	2	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_005124	exon2	c.C266T	p.A89V	TCATCGGCATATA		133	5	0.04	99	1	0.0101010101				105	0	0				A	17688695	G	A	17688695	3	1	35	1	0	0	0	0	1	0	0	0	10802	1203	42	2	4245	2	NUP153	6	17688695	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10		17688695	153426372	23	2389											
KLHDC3	116138	broad.mit.edu	37	chr6	42985386	42985386	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcctcctttggggcgggcGgaatgacaccgaaggggcct	16	11	0	1	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	KLHDC3	NM_057161	exon3	c.G284T	p.R95L	GCGGGCGGAATGA		105	5	0.05	95	0	0		23		362	0	0				T	42985386	G	T	42985386	3	4	35	1	0	0	0	0	1	0	0	0	8399	1116	39	1	290	1	KLHDC3	6	42985386	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	25296691	42985386	128129681	24	2390											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	51512912	51512912	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcccagggactctactcttCgattctagaaatgggaatag	10	9	3	1	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_138694	exon63	c.G11315A	p.R3772Q	ACTCTTCGATTCT		80	21	0.26	81	0	0				0	0					T	51512912	C	T	51512912	3	4	35	1	0	0	0	0	1	0	0	0	12018	884	31	1	929	1	PKHD1	6	51512912	Missense_Mutation	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10	8527526	51512912	119602155	25	2391											
IRAK1BP1	134728	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	79577463	79577463	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcgaggtgcaagtaagcgGcacctcagaagtgtctgcgg	15	11	2	1	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	IRAK1BP1	NM_001010844	exon1	c.G170A	p.G57D	TAAGCGGCACCTC		87	26	0.3	96	1	0.0104166667		18		7	3	0.43				A	79577463	G	A	79577463	3	1	35	1	0	0	0	0	1	0	0	0	7865	1203	42	2	172	2	IRAK1BP1	6	79577463	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	28064551	79577463	91537604	26	2392											
OPRM1	4988	mdanderson.org	37	chr6	154428665	154428665	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccactgagctacaatgcaggGcagtctccatttcccttccc	7	16	1	1	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_001145286	exon4	c.G1230A	p.G410G	TGCAGGGCAGTCT		53	3	0.06	58	0	0				0	0					A	154428665	G	A	154428665	2	1	35	1	0	0	0	0	0	0	0	1	10934	1190	42	2		2	OPRM1	6	154428665	Silent	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	74851202	154428665	16686402	27	2393											
SRPK2	6733	broad.mit.edu	37	chr7	104844187	104844187	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggtggtggtggtggtggCggtggaggaggaggaactaa	24	3	0	0	rs150640356		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	SRPK2	NM_182692	exon3	c.G117A	p.P39P	TGGTGGCGGTGGA		117	6	0.05	74	1	0.0135135135		76		83	0	0				T	104844187	C	T	104844187	2	4	35	1	0	0	0	0	0	0	0	1	15215	755	27	1		1	SRPK2	7	104844187	Silent	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10		104844187	54294476	28	2394											
XRCC2	7516	broad.mit.edu;mdanderson.org	37	chr7	152357797	152357797	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	attttttaccatgcacaggtGaatcttcatcagcaaacaga	6	9	3	2	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	XRCC2	NM_005431	exon2	c.C110A	p.S37X	ACAGGTGAATCTT		80	5	0.06	50	0	0		30		47	0	0				T	152357797	G	T	152357797	4	4	35	1	0	0	0	0	0	1	0	0	17512	1294	45	3	740	3	XRCC2	7	152357797	Nonsense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	47513610	152357797	6780866	29	2395											
WRN	7486	hgsc.bcm.edu	37	chr8	30945390	30945390	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cctactaaagaagaagaagaAgatgatgaaaatgaagctaa	9	4	0	8	rs149565907	bycluster;by1000genomes	TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	WRN,NS,carcinoma,0,1	WRN	NM_000553	exon12	c.A1530T	p.E510D	AGAAGAAGATGAT		62	3	0.05	53	0	0	0.001	0	1	20	0	0				T	30945390	A	T	30945390	3	4	35	1	0	0	0	0	1	0	0	0	17461	69	3	5	1572	5	WRN	8	30945390	Missense_Mutation	SNP	A	TCGA-2G-AAGO-01A-11D-A42Y-10		30945390	115418632	30	2396											
YTHDF3	253943	broad.mit.edu	37	chr8	64099415	64099415	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attggaacttgggatgaaaaAgggtcagtggtaaaggctcc	14	5	1	1	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	YTHDF3	.	.	.	.	TGAAAAAGGGTCA		152	3	0.02	139	2	0.0143884892		13		130	0	0				G	64099415	A	G	64099415	2	3	35	1	0	0	0	0	0	0	0	1	17559	72	3	4		4	YTHDF3	8	64099415	Silent	SNP	A	TCGA-2G-AAGO-01A-11D-A42Y-10	33154025	64099415	82264607	31	2397											
MAPK15	225689	broad.mit.edu	37	chr8	144803971	144803971	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccctgacctcccaggctgCggctcaggtggccaaccagg	12	17	1	1	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	MAPK15,bladder,carcinoma,-1,1	MAPK15	NM_139021	exon13	c.C1379T	p.A460V	AGGCTGCGGCTCA		87	3	0.03	71	0	0		32	1	3	0	0				T	144803971	C	T	144803971	3	4	35	1	0	0	0	0	1	0	0	0	9326	768	27	1	1429	1	MAPK15	8	144803971	Missense_Mutation	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10	80704556	144803971	1560051	32	2398											
TRIM32	22954	mdanderson.org	37	chr9	119460603	119460603	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgggcatgaggagcgcagGgtccaggatgagctggctcg	18	8	0	2	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_012210	exon2	c.G582T	p.R194S	GCGCAGGGTCCAG		49	3	0.06	38	0	0				17	0	0				T	119460603	G	T	119460603	3	4	35	1	0	0	0	0	1	0	0	0	16566	1223	43	3	584	3	TRIM32	9	119460603	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10		119460603	21752828	33	2399											
DENND1A	57706	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr9	126144051	126144051	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtgcccatgggcatctggCcaaagaggttgggcatggag	18	8	1	1	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	DENND1A	NM_020946	exon22	c.G2690A	p.G897D	ATCTGGCCAAAGA		173	28	0.16	184	1	0.0054347826		112		8	1	0.13				T	126144051	C	T	126144051	3	4	35	1	0	0	0	0	1	0	0	0	4454	739	26	2	343	2	DENND1A	9	126144051	Missense_Mutation	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10	6683448	126144051	15069380	34	2400											
UBTD1	80019	mdanderson.org	37	chr10	99329931	99329931	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacgatgagctgggcaatcGctaccagctgcccatctact	9	14	1	1	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	UBTD1,colon,carcinoma,0,2	UBTD1	NM_024954	exon3	c.G335A	p.R112H	GCAATCGCTACCA		42	3	0.07	50	0	0		0	2	72	0	0				A	99329931	G	A	99329931	3	1	35	1	0	0	0	0	1	0	0	0	16967	1087	38	1	345	1	UBTD1	10	99329931	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10		99329931	36204816	35	2401											
TCF7L2	6934	broad.mit.edu	37	chr10	114925530	114925530	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tccatgatgcctccgccaccCgccctcctgctcgctgaggc	9	20	0	2	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	TCF7L2	NM_001146274	exon14	c.C1608A	p.P536P	GCCACCCGCCCTC		126	3	0.02	124	1	0.0080645161		298		34	0	0				A	114925530	C	A	114925530	2	1	35	1	0	0	0	0	0	0	0	1	15757	639	23	1		1	TCF7L2	10	114925530	Silent	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10	15595599	114925530	20609217	36	2402											
HSPA12A	259217	mdanderson.org	37	chr10	118439125	118439125	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagttctgtctggggcagccGcccttttgcgagactcaaac	11	12	3	1	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	HSPA12A,colon,carcinoma,0,1	HSPA12A	NM_025015	exon10	c.C1175A	p.A392E	GCAGCCGCCCTTT		95	5	0.05	119	0	0		0	1	3	0	0				T	118439125	G	T	118439125	3	4	35	1	0	0	0	0	1	0	0	0	7446	1087	38	1	864	1	HSPA12A	10	118439125	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	3513595	118439125	17095622	37	2403											
SCGB2A2	4250	mdanderson.org	37	chr11	62038534	62038534	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actctgagcaatgttgaggtGtttatggtaatttcattttc	9	5	2	2	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_002411	exon2	c.G237T	p.V79V	TGAGGTGTTTATG		48	3	0.06	46	0	0				0	0					T	62038534	G	T	62038534	2	4	35	1	0	0	0	0	0	0	0	1	13952	1364	48	3		3	SCGB2A2	11	62038534	Silent	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10		62038534	72967982	38	2404											
RTN3	10313	broad.mit.edu	37	chr11	63525788	63525788	+	Frame_Shift_Del	DEL	T	T	-													cttgagcctgcattccaagcTttttttttaatttggtgttt					novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	RTN3	NM_001265591	exon4	c.570delT	p.A190fs	CCAAGCTTTTTTT		78	7	0.09	86	0	0		104		226	0	0				-	63525788	T	-	63525788	7	5	35	1	0	1	0	1	0	0	0	0	13778	1624	56	0		0	RTN3	11	63525788	Frame_Shift_Del	DEL	T	TCGA-2G-AAGO-01A-11D-A42Y-10	1487254	63525788	71480728	39	2405											
PC	5091	mdanderson.org	37	chr11	66639190	66639190	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgatgtctgggatgtgcaGgtaggcctgcacgggggcca	18	8	1	1	rs368549197		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_000920	exon4	c.C289A	p.L97M	TGTGCAGGTAGGC		26	2	0.08	29	0	0				29	0	0				T	66639190	G	T	66639190	3	4	35	1	0	0	0	0	1	0	0	0	11543	991	35	3	3323	3	PC	11	66639190	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	3113402	66639190	68367326	40	2406											
TCIRG1	10312	mdanderson.org	37	chr11	67818066	67818066	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tttgccgcctttgccgtgatGaccgtggctatcctgctggt	12	12	0	2	rs370231613	alternate_allele	TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_006019	exon19	c.G2349T	p.M783I	CGTGATGACCGTG		34	3	0.09	51	0	0				56	0	0				T	67818066	G	T	67818066	3	4	35	1	0	0	0	0	1	0	0	0	15762	1290	45	3	2419	3	TCIRG1	11	67818066	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	1178876	67818066	67188450	41	2407											
UVRAG	7405	mdanderson.org	37	chr11	75852429	75852429	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaacgtatccagcttccGccggccgcgcaggagttccg	12	14	0	1	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	UVRAG,NS,carcinoma,+1,1	UVRAG	NM_003369	exon15	c.G2072A	p.R691H	GCTTCCGCCGGCC		32	3	0.09	44	0	0		1	1	55	0	0				A	75852429	G	A	75852429	3	1	35	1	0	0	0	0	1	0	0	0	17167	1087	38	1	2130	1	UVRAG	11	75852429	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	8034363	75852429	59154087	42	2408											
FAT3	120114	broad.mit.edu;mdanderson.org	37	chr11	92086050	92086050	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agctttatgttcacattgagCgcataaatgaacatgcccca	7	10	1	2	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	FAT3_ENST00000409404,NS,carcinoma,0,8	FAT3	NM_001008781	exon1	c.C772T	p.R258C	ATTGAGCGCATAA		92	4	0.04	127	0	0		1822	8	1	0	0				T	92086050	C	T	92086050	3	4	35	1	0	0	0	0	1	0	0	0	5723	768	27	1	774	1	FAT3	11	92086050	Missense_Mutation	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10	16233621	92086050	42920466	43	2409											
MLL2	8085	broad.mit.edu	37	chr12	49444814	49444814	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggatggttccccagggggAgggaacaagggcagctcctc	16	10	0	0	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	MLL2_ENST00000301067,NS,carcinoma,0,1	MLL2	NM_003482	exon10	c.T2652C	p.P884P	AGGGGGAGGGAAC		138	5	0.04	122	0	0		1173	1	6	0	0				G	49444814	A	G	49444814	2	3	35	1	0	0	0	0	0	0	0	1	9668	291	11	4		4	MLL2	12	49444814	Silent	SNP	A	TCGA-2G-AAGO-01A-11D-A42Y-10		49444814	84407081	44	2410											
SLC12A6	9990	mdanderson.org	37	chr15	34549912	34549912	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcccaccacccatgtaagGcgtaaaaaaaggatcactcc	8	13	1	0	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_133647	exon5	c.C621A	p.R207R	TGTAAGGCGTAAA		53	3	0.06	74	0	0				7	0	0				T	34549912	G	T	34549912	2	4	35	1	0	0	0	0	0	0	0	1	14441	1190	42	2		2	SLC12A6	15	34549912	Silent	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10		34549912	67981480	45	2411											
MYO1E	4643	mdanderson.org	37	chr15	59453379	59453379	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaactgcacttgccgggagCcccctgcactccaggggccc	13	17	0	0	rs202237883	bycluster	TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_004998	exon24	c.G2678A	p.G893D	CGGGAGCCCCCTG		38	3	0.08	48	0	0				77	0	0				T	59453379	C	T	59453379	3	4	35	1	0	0	0	0	1	0	0	0	10119	739	26	2	668	2	MYO1E	15	59453379	Missense_Mutation	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10	24903467	59453379	43078013	46	2412											
SMAD6	4091	broad.mit.edu	37	chr15	66996088	66996090	+	In_Frame_Del	DEL	GCT	GCT	-													agtcgcgaagcgcgctcgcgGctgctgctgctggagcagga					novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	GCT	GCT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	SMAD6	NM_005585	exon1	c.492_494del	p.164_165del	CTCGCGGCTGCTG		6	2	0.33	6	0	0		14		3	0	0				-	66996090	GCT	-	66996088	7	5	35	1	0	1	0	1	0	0	0	0	14815	1190	42	0	494	0	SMAD6	15	66996088	In_Frame_Del	DEL	GCT	TCGA-2G-AAGO-01A-11D-A42Y-10	7542709	66996088	35535304	47	2413											
COX5A	9377	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr15	75219171	75219171	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accgtctgcatgcccgcaaaGcagcatcaatgattttgggc	10	12	2	1	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_004255	exon3	c.C275A	p.A92D	CGCAAAGCAGCAT		100	5	0.05	86	0	0				3045	1	0				T	75219171	G	T	75219171	3	4	35	1	0	0	0	0	1	0	0	0	3795	971	34	2	185	2	COX5A	15	75219171	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	8223083	75219171	27312221	48	2414											
PDPK1	5170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	2647685	2647685	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attatctgatggaccccagcGggaacgcacacaagtggtgc	12	11	1	1	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_002613	exon14	c.G1588A	p.G530R	CCCAGCGGGAACG		144	41	0.28	146	0	0				62	24	0.39				A	2647685	G	A	2647685	3	1	35	1	0	0	0	0	1	0	0	0	11733	1116	39	1	1642	1	PDPK1	16	2647685	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10		2647685	87707068	49	2415											
SRRM2	23524	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr16	2819139	2819139	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctcctcctcCtcttcttcctcctcctcttc	0	24	3	0	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_016333	exon12	c.C7875T	p.S2625S	CTCCTCCTCTTCT		94	8	0.09	70	0	0				971	5	0.01				T	2819139	C	T	2819139	2	4	35	1	0	0	0	0	0	0	0	1	15224	668	24	3		3	SRRM2	16	2819139	Silent	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10	171454	2819139	87535614	50	2416											
RABEP2	79874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	28925902	28925902	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agggaaggggcatgccggggAcgtctctagggaagggggca	21	7	1	0	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_024816	exon5	c.T549G	p.R183R	CCGGGGACGTCTC		41	7	0.17	63	0	0				34	6	0.18				C	28925902	A	C	28925902	2	2	35	1	0	0	0	0	0	0	0	1	13013	262	10	4		4	RABEP2	16	28925902	Silent	SNP	A	TCGA-2G-AAGO-01A-11D-A42Y-10	26106763	28925902	61428851	51	2417											
TGFB1I1	7041	broad.mit.edu	37	chr16	31484850	31484850	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgcggagcctctcaccccTcccccatcctatggccacca	6	22	1	0	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	TGFB1I1	NM_001042454	exon2	c.T102C	p.P34P	CACCCCTCCCCCA		37	8	0.22	37	4	0.1081081081		60		21	0	0				C	31484850	T	C	31484850	2	2	35	1	0	0	0	0	0	0	0	1	15876	1538	54	4		4	TGFB1I1	16	31484850	Silent	SNP	T	TCGA-2G-AAGO-01A-11D-A42Y-10	2558948	31484850	58869903	52	2418											
CIAPIN1	57019	mdanderson.org	37	chr16	57463161	57463161	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatcccaaggtaggggcagCtggcacagcggaaggcatcg	16	11	0	0	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_020313	exon9	c.G860A	p.S287N	GGGCAGCTGGCAC		52	3	0.06	40	0	0				536	0	0				T	57463161	C	T	57463161	3	4	35	1	0	0	0	0	1	0	0	0	3441	797	28	2	82	2	CIAPIN1	16	57463161	Missense_Mutation	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10	25978311	57463161	32891592	53	2419											
OR1A1	8383	hgsc.bcm.edu;bcgsc.ca	37	chr17	3118967	3118967	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	attcatcctcctgggagttaCtggtcagcaggaacaggaag	12	9	2	0	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_014565	exon1	c.C53G	p.T18S	GAGTTACTGGTCA		79	4	0.05	94	0	0				0	0					G	3118967	C	G	3118967	3	3	35	1	0	0	0	0	1	0	0	0	10996	565	20	5	55	5	OR1A1	17	3118967	Missense_Mutation	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10		3118967	78076243	54	2420											
ALOX15	246	mdanderson.org	37	chr17	4535309	4535309	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtggttggcgggggcagccGcatcgtgcagggtgcattag	20	8	0	0	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_001140	exon13	c.C1684T	p.R562W	GCAGCCGCATCGT		42	3	0.07	64	0	0				1	0	0				A	4535309	G	A	4535309	3	1	35	1	0	0	0	0	1	0	0	0	534	1086	38	1	312	1	ALOX15	17	4535309	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	1416342	4535309	76659901	55	2421											
KCTD11	147040	mdanderson.org	37	chr17	7256675	7256675	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgtctaggtgctttgcgGgcccgatttggtgtggccag	17	8	1	0	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	KCTD11,NS,carcinoma,0,1	KCTD11	NM_001002914	exon1	c.G414T	p.R138R	TTTGCGGGCCCGA		42	3	0.07	56	0	0		0	1	10	0	0				T	7256675	G	T	7256675	2	4	35	1	0	0	0	0	0	0	0	1	8141	1219	43	3		3	KCTD11	17	7256675	Silent	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	2721366	7256675	73938535	56	2422											
PIK3R5	23533	mdanderson.org	37	chr17	8808104	8808104	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cagtgcttacctggggccttGagttcagcatcaatgaaggt	12	9	2	2	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_001142633	exon5	c.C402A	p.L134L	GGCCTTGAGTTCA		43	3	0.07	61	0	0				12	0	0				T	8808104	G	T	8808104	2	4	35	1	0	0	0	0	0	0	0	1	11969	1277	45	3		3	PIK3R5	17	8808104	Silent	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	1551429	8808104	72387106	57	2423											
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	27401817	27401817	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	agtctccgtcagcttggcctCtgtgtcgctgtcactcagat	10	13	5	1	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_078471	exon42	c.G6136A	p.E2046K	TGGCCTCTGTGTC		166	32	0.19	144	0	0				115	19	0.17				T	27401817	C	T	27401817	3	4	35	1	0	0	0	0	1	0	0	0	10112	922	32	3	32	3	MYO18A	17	27401817	Missense_Mutation	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10	18593713	27401817	53793393	58	2424											
GIT1	28964	mdanderson.org	37	chr17	27903296	27903296	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccaggggggcccccaaagGgcttcagggcagagccaggt	16	14	1	1	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_001085454	exon15	c.C1580A	p.P527H	CCAAAGGGCTTCA		47	3	0.06	42	0	0				144	0	0				T	27903296	G	T	27903296	3	4	35	1	0	0	0	0	1	0	0	0	6437	1232	43	3	760	3	GIT1	17	27903296	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	501479	27903296	53291914	59	2425											
CCL18	6362	broad.mit.edu	37	chr17	34398343	34398343	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaggccggcagatctgtgCtgaccccaataagaagtggg	15	9	1	4	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	CCL18	NM_002988	exon3	c.C212T	p.A71V	TCTGTGCTGACCC		375	6	0.02	285	0	0		9		8	0	0				T	34398343	C	T	34398343	3	4	35	1	0	0	0	0	1	0	0	0	2909	797	28	2	222	2	CCL18	17	34398343	Missense_Mutation	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10	6495047	34398343	46796867	60	2426											
CAPS	828	mdanderson.org	37	chr19	5914617	5914617	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgggagcagatccctggacGctgatgagttccggcagggt	16	10	0	3	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_080590	exon3	c.G127T	p.A43S	CTGGACGCTGATG		49	3	0.06	61	0	0				14	0	0				T	5914617	G	T	5914617	3	4	35	1	0	0	0	0	1	0	0	0	2655	1087	38	1	133	1	CAPS	19	5914617	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10		5914617	53214366	61	2427											
ICAM3	3385	ucsc.edu	37	chr19	10444835	10444835	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcagccccgtgttagctcaCcctcaatgtccatcaccacg	7	18	3	0	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	ICAM3	NM_002162	exon7	c.1441+1G>T	.	AGCTCACCCTCAA		37	4	0.11	40	0	0		29		9	0	0				A	10444835	C	A	10444835	5	1	35	1	0	0	0	0	0	0	1	0	7524	521	18	3	209	3	ICAM3	19	10444835	Splice_Site	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10	4530218	10444835	48684148	62	2428											
TYK2	7297	mdanderson.org	37	chr19	10468498	10468498	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caaagcagatctccaggaggGtggcgccaaacccccacttg	11	14	1	1	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_003331	exon17	c.C2408A	p.T803N	AGGAGGGTGGCGC		52	3	0.06	75	0	0				22	0	0				T	10468498	G	T	10468498	3	4	35	1	0	0	0	0	1	0	0	0	16871	1261	44	3	1191	3	TYK2	19	10468498	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	23663	10468498	48660485	63	2429											
ZBTB32	27033	mdanderson.org	37	chr19	36206029	36206029	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaggagatgttgcacaaGcactcgccaccaagaggcag	12	11	0	2	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_014383	exon2	c.G501T	p.K167N	GCACAAGCACTCG		38	3	0.08	46	0	0				5	0	0				T	36206029	G	T	36206029	3	4	35	1	0	0	0	0	1	0	0	0	17593	962	34	2	503	2	ZBTB32	19	36206029	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	25737531	36206029	22922954	64	2430											
CAPNS1	826	mdanderson.org	37	chr19	36632054	36632054	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcggcggcggcggcggCggtggtggaggcggcggtgg	28	9	0	0	rs17879825		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_001749	exon2	c.C141T	p.G47G	CGGCGGCGGTGGT		113	6	0.05	95	2	0.0210526316	0.006			2	0	0				T	36632054	C	T	36632054	2	4	35	1	0	0	0	0	0	0	0	1	2651	755	27	1		1	CAPNS1	19	36632054	Silent	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10	426025	36632054	22496929	65	2431											
MYLK2	85366	broad.mit.edu	37	chr20	30418685	30418685	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agatcattgactttggcctgGcacggaggtaccacctgggt	13	10	1	2	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	MYLK2	NM_033118	exon9	c.G1288A	p.A430T	GGCCTGGCACGGA		164	5	0.03	159	0	0		76		1	0	0				A	30418685	G	A	30418685	3	1	35	1	0	0	0	0	1	0	0	0	10104	1203	42	2	1318	2	MYLK2	20	30418685	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10		30418685	32606835	66	2432											
PCIF1	63935	mdanderson.org	37	chr20	44567735	44567735	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagccctgttctccaaagCcaatccgcctggttcaggac	9	16	2	0	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_022104	exon3	c.C97T	p.P33S	CCAAAGCCAATCC		54	3	0.06	52	0	0				58	0	0				T	44567735	C	T	44567735	3	4	35	1	0	0	0	0	1	0	0	0	11626	739	26	2	99	2	PCIF1	20	44567735	Missense_Mutation	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10	14149050	44567735	18457785	67	2433											
FAM3B	54097	mdanderson.org	37	chr21	42694879	42694879	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtggtgttcgtggtcttcGcctccttgtgtgcctggtat	14	9	1	0	rs371282791		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_058186	exon2	c.G49A	p.A17T	GTCTTCGCCTCCT		26	3	0.12	23	0	0				1	0	0				A	42694879	G	A	42694879	3	1	35	1	0	0	0	0	1	0	0	0	5592	1087	38	1	55	1	FAM3B	21	42694879	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10		42694879	5435016	68	2434											
SLC37A1	54020	broad.mit.edu	37	chr21	43974235	43974235	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agaagcaaatcttgaagagcGaaaagaacaagcctctggta	10	7	2	4	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	SLC37A1	NM_018964	exon11	c.G832A	p.E278K	AAGAGCGAAAAGA		43	4	0.09	24	2	0.0833333333		48		17	0	0				A	43974235	G	A	43974235	3	1	35	1	0	0	0	0	1	0	0	0	14651	1059	37	1	866	1	SLC37A1	21	43974235	Missense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	1279356	43974235	4155660	69	2435											
MCM3AP	8888	hgsc.bcm.edu;mdanderson.org	37	chr21	47664965	47664965	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctcctgagaagcaagaccGcccagacgcctctctcttct	9	16	3	3	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	MCM3AP,caecum,carcinoma,-1,2	MCM3AP	NM_003906	exon23	c.C4794T	p.G1598G	AAGACCGCCCAGA		121	5	0.04	119	0	0		-1	2	130	0	0				A	47664965	G	A	47664965	2	1	35	1	0	0	0	0	0	0	0	1	9437	1074	38	1		1	MCM3AP	21	47664965	Silent	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10	3690730	47664965	464930	70	2436											
PEX26	55670	hgsc.bcm.edu	37	chr22	18568023	18568023	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggtggtgagatttgatccAggtaagaggtggagactctc	15	6	1	4	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_001127649	exon4	c.A813G	p.P271P	TGATCCAGGTAAG		96	4	0.04	70	0	0				132	0	0				G	18568023	A	G	18568023	2	3	35	1	0	0	0	0	0	0	0	1	11793	202	7	4		4	PEX26	22	18568023	Silent	SNP	A	TCGA-2G-AAGO-01A-11D-A42Y-10		18568023	32736543	71	2437											
C22orf43	51233	broad.mit.edu	37	chr22	23974156	23974156	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcataacagggtgcgtcctTccccctgggccagccacagt	10	15	1	0	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	C22orf43	NM_016449	exon1	c.A55G	p.K19E	CGTCCTTCCCCCT		247	7	0.03	150	3	0.02		18		1	0	0				C	23974156	T	C	23974156	3	2	35	1	0	0	0	0	1	0	0	0	2164	1792	62	4	682	4	C22orf43	22	23974156	Missense_Mutation	SNP	T	TCGA-2G-AAGO-01A-11D-A42Y-10	5406133	23974156	27330410	72	2438											
UQCR10	29796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	30163557	30163557	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgagggcctgtgccatccCtgaccttggacccgcctgag	14	14	0	3	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_001003684	exon1	c.C170T	p.P57L	CCATCCCTGACCT		58	16	0.28	92	0	0				121	36	0.3				T	30163557	C	T	30163557	3	4	35	1	0	0	0	0	1	0	0	0	17075	681	24	3	172	3	UQCR10	22	30163557	Missense_Mutation	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10	6189401	30163557	21141009	73	2439											
GGA1	26088	mdanderson.org	37	chr22	38019586	38019586	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accagcgctgtgagcggatgCggcccacgctcttccgactg	13	15	1	1	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_001001560	exon9	c.C778T	p.R260W	CGGATGCGGCCCA		86	4	0.05	91	0	0				68	0	0				T	38019586	C	T	38019586	3	4	35	1	0	0	0	0	1	0	0	0	6393	759	27	1	878	1	GGA1	22	38019586	Missense_Mutation	SNP	C	TCGA-2G-AAGO-01A-11D-A42Y-10	7856029	38019586	13284980	74	2440											
HDAC10	83933	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	50688078	50688081	+	Frame_Shift_Del	DEL	AAAG	AAAG	-													gctcacctggggtcatcctcAaagagatactggatcccctg					novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	AAAG	AAAG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	HDAC10	NM_032019	exon6	c.547_550del	p.183_184del	ATCCTCAAAGAGA		69	15	0.22	69	0	0		29		27	0	0				-	50688081	AAAG	-	50688078	7	5	35	1	0	1	0	1	0	0	0	0	7045	127	5	0	1520	0	HDAC10	22	50688078	Frame_Shift_Del	DEL	AAAG	TCGA-2G-AAGO-01A-11D-A42Y-10	12668492	50688078	616488	75	2441											
MAGEB10	139422	mdanderson.org	37	chrX	27840132	27840132	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tggggttatatgacggaattGagcacttcatgtttggggag	15	4	1	2	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	.	NM_182506	exon3	c.G709T	p.E237X	GGAATTGAGCACT		43	3	0.07	53	0	0				0	0					T	27840132	G	T	27840132	4	4	35	1	0	0	0	0	0	1	0	0	9222	1291	45	3	711	3	MAGEB10	23	27840132	Nonsense_Mutation	SNP	G	TCGA-2G-AAGO-01A-11D-A42Y-10		27840132	127430428	76	2442											
ATRX	546	broad.mit.edu	37	chrX	76855029	76855029	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agctactatcttttttccccTttttcccttttttcttcttt	1	12	3	0	novel		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	ATRX	NM_000489	exon25	c.A5807G	p.K1936R	TTCCCCTTTTTCC		294	6	0.02	232	0	0		833		42	0	0				C	76855029	T	C	76855029	3	2	35	1	0	0	0	0	1	0	0	0	1206	1609	56	4	1715	4	ATRX	23	76855029	Missense_Mutation	SNP	T	TCGA-2G-AAGO-01A-11D-A42Y-10	49014897	76855029	78415531	77	2443											
CTAG2	30848	broad.mit.edu	37	chrX	153881676	153881676	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacctctgccgcccgtggcAcccgcctctcctgggccgcc	12	21	2	0	rs370709312		TCGA-2G-AAGO-01A-11D-A42Y-10	TCGA-2G-AAGO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95579513-5f16-4bdc-bf4c-4d4d76a3d069	ce86540c-8488-46d3-9a6f-591f2f3b5be7	.	CTAG2	NM_020994	exon1	c.T114G	p.G38G	CGTGGCACCCGCC		45	24	0.53	38	11	0.2894736842		88		1	0	0				C	153881676	A	C	153881676	2	2	35	1	0	0	0	0	0	0	0	1	4016	146	6	4		4	CTAG2	23	153881676	Silent	SNP	A	TCGA-2G-AAGO-01A-11D-A42Y-10	77026647	153881676	1388884	78	2444											
SKI	6497	broad.mit.edu	37	chr1	2160966	2160966	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggactgccgcctcatgtAcccgccgcacaagttcgtgg	11	16	1	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	SKI	NM_003036	exon1	c.A761C	p.Y254S	TCATGTACCCGCC		30	6	0.2	27	3	0.1111111111		33		42	1	0.02				C	2160966	A	C	2160966	3	2	36	1	0	0	0	0	1	0	0	0	14411	391	14	4	763	4	SKI	1	2160966	Missense_Mutation	SNP	A	TCGA-2G-AAGP-01A-11D-A42Y-10		2160966	247089655	1	2445											
PER3	8863	mdanderson.org	37	chr1	7902773	7902773	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagattcagctgatggtgcGgccacatcctgtggtcaggt	14	9	2	2	rs144281505		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_016831	exon21	c.G3564A	p.A1188A	TGGTGCGGCCACA		63	3	0.05	101	0	0	0			10	0	0				A	7902773	G	A	7902773	2	1	36	1	0	0	0	0	0	0	0	1	11777	1103	39	1		1	PER3	1	7902773	Silent	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	5741807	7902773	241347848	2	2446											
UBE4B	10277	mdanderson.org	37	chr1	10182134	10182134	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaagaagtgttcaagcaGgtacggtcgtatgagtttgc	14	5	1	3	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_001105562	exon10	c.G1554T	p.Q518H	CAAGCAGGTACGG		54	3	0.06	101	0	0				36	0	0				T	10182134	G	T	10182134	3	4	36	1	0	0	0	0	1	0	0	0	16943	1014	35	3	1592	3	UBE4B	1	10182134	Missense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	2279361	10182134	239068487	3	2447											
EPB41	2035	broad.mit.edu	37	chr1	29379772	29379772	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgaaggctgaagtgaaaaAggaagacgagccacctgagc	14	7	0	5	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	EPB41	NM_001166006	exon12	c.A1793G	p.K598R	TGAAAAAGGAAGA		360	7	0.02	423	0	0		118		58	0	0				G	29379772	A	G	29379772	3	3	36	1	0	0	0	0	1	0	0	0	5179	72	3	4	1835	4	EPB41	1	29379772	Missense_Mutation	SNP	A	TCGA-2G-AAGP-01A-11D-A42Y-10	19197638	29379772	219870849	4	2448											
PRKAA2	5563	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	57111084	57111084	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgagaagcagaagcacgaCgggcgggtgaagatcggaca	17	8	0	4	rs200643979	by1000genomes;alternate_allele	TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_006252	exon1	c.C24A	p.D8E	GCACGACGGGCGG		109	9	0.08	100	0	0				0	0					A	57111084	C	A	57111084	3	1	36	1	0	0	0	0	1	0	0	0	12545	535	19	1	26	1	PRKAA2	1	57111084	Missense_Mutation	SNP	C	TCGA-2G-AAGP-01A-11D-A42Y-10	27731312	57111084	192139537	5	2449											
OR2B11	127623	mdanderson.org	37	chr1	247614868	247614868	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgacagagagcacggtgcatGagaacggcatagtgcagggg	17	7	0	3	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_001004492	exon1	c.C417A	p.L139L	GTGCATGAGAACG		43	3	0.07	57	0	0				0	0					T	247614868	G	T	247614868	2	4	36	1	0	0	0	0	0	0	0	1	11035	1277	45	3		3	OR2B11	1	247614868	Silent	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	190503784	247614868	1635753	6	2450											
APOB	338	broad.mit.edu	37	chr2	21266752	21266754	+	In_Frame_Del	DEL	CAG	CAG	-													tcaccggccctggcgcccgcCagcagcagcagcagcagcgc					novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	CAG	CAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	APOB	NM_000384	exon1	c.64_66del	p.22_22del	GCCCGCCAGCAGC		6	2	0.33	4	0	0		761		0	0					-	21266754	CAG	-	21266752	7	5	36	1	0	1	0	1	0	0	0	0	782	581	21	0	13741	0	APOB	2	21266752	In_Frame_Del	DEL	CAG	TCGA-2G-AAGP-01A-11D-A42Y-10		21266752	221932621	7	2451											
SCN7A	6332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	167313390	167313390	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atatagatacctcatctgttTcatttccttcttgaagttct	4	9	5	2	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_002976	exon10	c.A1280T	p.E427V	TCTGTTTCATTTC		59	11	0.19	82	0	0				3	1	0.33				A	167313390	T	A	167313390	3	1	36	1	0	0	0	0	1	0	0	0	13976	1783	62	5	3832	5	SCN7A	2	167313390	Missense_Mutation	SNP	T	TCGA-2G-AAGP-01A-11D-A42Y-10	146046638	167313390	75885983	8	2452											
SMARCAL1	50485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	217329366	217329366	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcttcttcaacagaacagCtgaagctaaaatcccatctg	5	12	4	2	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_014140	exon13	c.C2117T	p.A706V	GAACAGCTGAAGC		68	10	0.15	70	0	0				63	14	0.22				T	217329366	C	T	217329366	3	4	36	1	0	0	0	0	1	0	0	0	14826	797	28	2	2159	2	SMARCAL1	2	217329366	Missense_Mutation	SNP	C	TCGA-2G-AAGP-01A-11D-A42Y-10	50015976	217329366	25870007	9	2453											
TMEM115	11070	mdanderson.org	37	chr3	50396199	50396199	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaccactgagaagaagatgAgcagctccaaggccccccag	10	14	1	4	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_007024	exon1	c.T296C	p.L99P	AAGATGAGCAGCT		47	3	0.06	52	0	0				116	0	0				G	50396199	A	G	50396199	3	3	36	1	0	0	0	0	1	0	0	0	16088	304	11	4	767	4	TMEM115	3	50396199	Missense_Mutation	SNP	A	TCGA-2G-AAGP-01A-11D-A42Y-10		50396199	147626231	10	2454											
RBM15B	29890	broad.mit.edu;bcgsc.ca	37	chr3	51430005	51430023	+	Frame_Shift_Del	DEL	GGGCTAAGGTGGCCATGTC	GGGCTAAGGTGGCCATGTC	-													gaacctggacatggcccataGggctaaggtggccatgtcgg					novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	GGGCTAAGGTGGCCATGTC	GGGCTAAGGTGGCCATGTC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	RBM15B,colon,carcinoma,0,1	RBM15B	NM_013286	exon1	c.1175_1193del	p.392_398del	CCCATAGGGCTAA		109	9	0.08	146	0	0		47	1	64	0	0				-	51430023	GGGCTAAGGTGGCCATGTC	-	51430005	7	5	36	1	0	1	0	1	0	0	0	0	13168	1000	35	0	1177	0	RBM15B	3	51430005	Frame_Shift_Del	DEL	GGGCTAAGGTGGCCATGTC	TCGA-2G-AAGP-01A-11D-A42Y-10	1033806	51430005	146592425	11	2455											
PARP9	83666	broad.mit.edu	37	chr3	122255025	122255025	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	tgacacctaccgcaaggtgtCgagtacattctttgaaagcc	9	11	1	2	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	PARP9	NM_031458	exon10	c.G2175C	p.S725S	AGGTGTCGAGTAC		277	6	0.02	283	0	0		72		140	6	0.04	rescued with RNA-seq			G	122255025	C	G	122255025	2	3	36	1	0	0	0	0	0	0	0	1	11512	871	31	5		5	PARP9	3	122255025	Silent	SNP	C	TCGA-2G-AAGP-01A-11D-A42Y-10	70825020	122255025	75767405	12	2456											
CLSTN2	64084	mdanderson.org	37	chr3	140281041	140281041	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gatttctgtgacattttggtGatcggaggggacttggaccc	14	7	1	2	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_022131	exon13	c.G2103T	p.V701V	TTTGGTGATCGGA		69	4	0.06	100	0	0				4	0	0				T	140281041	G	T	140281041	2	4	36	1	0	0	0	0	0	0	0	1	3585	1277	45	3		3	CLSTN2	3	140281041	Silent	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	18026016	140281041	57741389	13	2457											
CHST2	9435	broad.mit.edu	37	chr3	142840095	142840095	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcggcagggatggcgggggTtgcggcccctccaggcaatg	19	12	0	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	CHST2	NM_004267	exon2	c.T437G	p.V146G	CGGGGGTTGCGGC		45	12	0.27	44	13	0.2954545455		67		34	2	0.06				G	142840095	T	G	142840095	3	3	36	1	0	0	0	0	1	0	0	0	3426	1725	60	4	439	4	CHST2	3	142840095	Missense_Mutation	SNP	T	TCGA-2G-AAGP-01A-11D-A42Y-10	2559054	142840095	55182335	14	2458											
PRSS12	8492	broad.mit.edu	37	chr4	119252936	119252936	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cattggtcatcacaaacggtTccccactggccagcatggta	9	13	2	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	PRSS12	NM_003619	exon4	c.A906C	p.G302G	AACGGTTCCCCAC		302	8	0.03	372	3	0.0080645161		71		10	0	0				G	119252936	T	G	119252936	2	3	36	1	0	0	0	0	0	0	0	1	12664	1770	62	4		4	PRSS12	4	119252936	Silent	SNP	T	TCGA-2G-AAGP-01A-11D-A42Y-10		119252936	71901340	15	2459											
SLC6A19	340024	hgsc.bcm.edu	37	chr5	1216727	1216727	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatcaacggcttcacatcGgtgtatgtggccatcgtggt	11	10	3	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	SLC6A19,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	SLC6A19	NM_001003841	exon7	c.G942T	p.S314S	CACATCGGTGTAT		82	4	0.05	124	0	0		0	1	4	0	0				T	1216727	G	T	1216727	2	4	36	1	0	0	0	0	0	0	0	1	14736	1103	39	1		1	SLC6A19	5	1216727	Silent	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10		1216727	179698533	16	2460											
PCDHGB1	0	broad.mit.edu	37	chr5	140730563	140730563	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagccaggaggtatacaggGttagcctccaagaaaacgta	11	8	0	1	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	PCDHGB1	NM_018922	exon1	c.G736T	p.V246F	TACAGGGTTAGCC		114	3	0.03	135	0	0		198		0	0					T	140730563	G	T	140730563	3	4	36	1	0	0	0	0	1	0	0	0	11608	1261	44	3	738	3	PCDHGB1	5	140730563	Missense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	139513836	140730563	40184697	17	2461											
TBC1D9B	23061	mdanderson.org	37	chr5	179306156	179306156	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	acgccacgcccgtactcgaaGaagtggatgtgccatgactc	11	13	0	2	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_015043	exon9	c.C1458A	p.F486L	CTCGAAGAAGTGG		12	2	0.17	27	0	0				90	0	0				T	179306156	G	T	179306156	3	4	36	1	0	0	0	0	1	0	0	0	15687	933	33	3	2350	3	TBC1D9B	5	179306156	Missense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	38575593	179306156	1609104	18	2462											
GNB2L1	10399	broad.mit.edu;mdanderson.org	37	chr5	180668627	180668627	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gtatggcccacaaatcgcctCgtggtggtgcccctgagagg	14	12	0	1	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	GNB2L1	NM_006098	exon3	c.G294T	p.T98T	TCGCCTCGTGGTG		45	5	0.11	67	0	0		22		2875	862	0.3				A	180668627	C	A	180668627	2	1	36	1	0	0	0	0	0	0	0	1	6559	871	31	1		1	GNB2L1	5	180668627	Silent	SNP	C	TCGA-2G-AAGP-01A-11D-A42Y-10	1362471	180668627	246633	19	2463											
BTN2A2	10385	hgsc.bcm.edu	37	chr6	26384092	26384092	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acttctccctgccagcctccCtcctcctcctcctgctcctc	3	24	1	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	BTN2A2_ENST00000432533,bladder,carcinoma,-1,2	BTN2A2_ENST00000432533	NM_181531	exon2	c.C43T	p.L15F	GCCTCCCTCCTCC		100	5	0.05	92	1	0.0108695652		-1	2	36	0	0				T	26384092	C	T	26384092	3	4	36	1	0	0	0	0	1	0	0	0	1564	681	24	3	45	3	BTN2A2	6	26384092	Missense_Mutation	SNP	C	TCGA-2G-AAGP-01A-11D-A42Y-10		26384092	144730975	20	2464											
NKAPL	222698	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	28228082	28228082	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgcagctatggctgagtaTgtaaaagctggaaagcgaat	14	5	0	1	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	NKAPL,NS,carcinoma,0,1	NKAPL	NM_001007531	exon1	c.T933C	p.Y311Y	TGAGTATGTAAAA		113	11	0.1	115	0	0		0	1	4	0	0				C	28228082	T	C	28228082	2	2	36	1	0	0	0	0	0	0	0	1	10486	1471	51	4		4	NKAPL	6	28228082	Silent	SNP	T	TCGA-2G-AAGP-01A-11D-A42Y-10	1843990	28228082	142886985	21	2465											
TNFAIP3	7128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	138200293	138200293	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agtcagatccctcgcggctcGtccggagcccctccccgcat	10	19	1	1	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	TNFAIP3,rectum,carcinoma,-1,2	TNFAIP3	NM_001270507	exon7	c.G1711C	p.V571L	CGGCTCGTCCGGA		52	9	0.17	65	2	0.0307692308		-1	2	56	8	0.14				C	138200293	G	C	138200293	3	2	36	1	0	0	0	0	1	0	0	0	16333	1145	40	5	1733	5	TNFAIP3	6	138200293	Missense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	109972211	138200293	32914774	22	2466											
HIVEP2	3097	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	143091135	143091135	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taatgaagaactctgtgggcTcatgctcatgtccgatgccg	11	10	3	2	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	HIVEP2	NM_006734	exon5	c.A4741G	p.S1581G	GTGGGCTCATGCT		159	32	0.2	165	1	0.0060606061		225		8	2	0.25				C	143091135	T	C	143091135	3	2	36	1	0	0	0	0	1	0	0	0	7227	1551	54	4	2623	4	HIVEP2	6	143091135	Missense_Mutation	SNP	T	TCGA-2G-AAGP-01A-11D-A42Y-10	4890842	143091135	28023932	23	2467											
CREB5	9586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	28547354	28547354	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagaggagagcagcaagcGggtaggtttgcttggatggc	19	5	0	2	rs142741982	alternate_allele	TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	CREB5,rectum,carcinoma,+1,1	CREB5	NM_182898	exon4	c.G290A	p.R97Q	GCAAGCGGGTAGG		71	11	0.15	91	0	0	0	1	1	0	0					A	28547354	G	A	28547354	3	1	36	1	0	0	0	0	1	0	0	0	3883	1130	39	1	304	1	CREB5	7	28547354	Missense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10		28547354	130591309	24	2468											
VWC2	375567	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	49815586	49815586	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgcaccgaggaggggccGctgtgcgcgcagcccgagtg	18	13	0	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_198570	exon2	c.G555C	p.P185P	GGGGCCGCTGTGC		22	5	0.23	16	0	0				0	0					C	49815586	G	C	49815586	2	2	36	1	0	0	0	0	0	0	0	1	17302	1074	38	5		5	VWC2	7	49815586	Silent	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	21268232	49815586	109323077	25	2469											
ZC3HC1	51530	mdanderson.org	37	chr7	129691202	129691202	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgtccctcacagggcgccGccatcttggtccgctgccga	11	17	2	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_016478	exon1	c.C5T	p.A2V	GGCGCCGCCATCT		95	5	0.05	119	0	0				8	0	0				A	129691202	G	A	129691202	3	1	36	1	0	0	0	0	1	0	0	0	17635	1087	38	1	1543	1	ZC3HC1	7	129691202	Missense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	79875616	129691202	29447461	26	2470											
SSPO	23145	mdanderson.org	37	chr7	149509500	149509500	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccacgggcacagggggagGtctgccaggctctgccctgc	17	14	2	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_198455	exon69	c.G9898T	p.V3300F	GGGGAGGTCTGCC		19	2	0.11	27	1	0.037037037				0	0					T	149509500	G	T	149509500	3	4	36	1	0	0	0	0	1	0	0	0	15244	1261	44	3	10166	3	SSPO	7	149509500	Missense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	19818298	149509500	9629163	27	2471											
FAM83A	84985	broad.mit.edu	37	chr8	124219616	124219616	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tccgccagtgaccgcacgtcCtccaaccccttcagcggccg	9	20	1	1	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	FAM83A	NM_032899	exon4	c.C993G	p.S331S	CACGTCCTCCAAC		58	3	0.05	68	0	0		64		0	0					G	124219616	C	G	124219616	2	3	36	1	0	0	0	0	0	0	0	1	5664	668	24	5		5	FAM83A	8	124219616	Silent	SNP	C	TCGA-2G-AAGP-01A-11D-A42Y-10		124219616	22144406	28	2472											
TRPM6	140803	mdanderson.org	37	chr9	77390989	77390989	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gattccatatctaagtaaacGttgctgtaagatgaagtaag	9	5	1	2	rs376920206	alternate_allele	TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_017662	exon24	c.C3213A	p.N1071K	GTAAACGTTGCTG		53	3	0.06	76	0	0				0	0					T	77390989	G	T	77390989	3	4	36	1	0	0	0	0	1	0	0	0	16650	1136	40	1	2919	1	TRPM6	9	77390989	Missense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10		77390989	63822442	29	2473											
ANKS6	203286	hgsc.bcm.edu	37	chr9	101546298	101546298	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctgcttgtcaacatccGcgtgcctctccaccagcagc	8	17	2	0	rs376042242	alternate_allele	TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	ANKS6,NS,carcinoma,-1,1	ANKS6	NM_173551	exon4	c.C1049A	p.A350E	ACATCCGCGTGCC		49	2	0.04	61	0	0		-1	1	29	0	0				T	101546298	G	T	101546298	3	4	36	1	0	0	0	0	1	0	0	0	686	1087	38	1	1614	1	ANKS6	9	101546298	Missense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	24155309	101546298	39667133	30	2474											
SURF6	6838	bcgsc.ca	37	chr9	136198944	136198944	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaggcgttcgtcgtcacGgatcttcacgccctccgcct	10	17	3	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	SURF6	NM_006753	exon5	c.C847A	p.R283S	CGTCACGGATCTT		44	4	0.09	50	0	0		32		126	0	0				T	136198944	G	T	136198944	3	4	36	1	0	0	0	0	1	0	0	0	15461	1116	39	1	242	1	SURF6	9	136198944	Missense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	34652646	136198944	5014487	31	2475											
C10orf128	170371	mdanderson.org	37	chr10	50374968	50374968	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtcgtcgtcaaataagtGcctcctgatcatgcagatct	9	10	3	3	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_001010863	exon3	c.C184A	p.H62N	ATAAGTGCCTCCT		45	3	0.07	65	0	0				32	0	0				T	50374968	G	T	50374968	3	4	36	1	0	0	0	0	1	0	0	0	1596	1319	46	2	149	2	C10orf128	10	50374968	Missense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10		50374968	85159779	32	2476											
MSMB	4477	mdanderson.org	37	chr10	51562390	51562390	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctgttctgtcagtgaatGgataatctaatgtgcttcta	9	7	4	1	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_138634	exon3	c.G229T	p.G77X	GTGAATGGATAAT		48	3	0.06	45	0	0				1	0	0				T	51562390	G	T	51562390	4	4	36	1	0	0	0	0	0	1	0	0	9930	1358	47	3	349	3	MSMB	10	51562390	Nonsense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	1187422	51562390	83972357	33	2477											
HHEX	3087	broad.mit.edu	37	chr10	94449787	94449787	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcggcgggcgccgtgggggTgccgctgtacgcgcccacgc	20	15	0	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	HHEX	NM_002729	exon1	c.T44G	p.V15G	TGGGGGTGCCGCT		44	29	0.66	40	13	0.325		22		4	0	0				G	94449787	T	G	94449787	3	3	36	1	0	0	0	0	1	0	0	0	7131	1696	59	4	46	4	HHEX	10	94449787	Missense_Mutation	SNP	T	TCGA-2G-AAGP-01A-11D-A42Y-10	42887397	94449787	41084960	34	2478											
MYOD1	4654	mdanderson.org	37	chr11	17741614	17741614	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcgggccgctgcctactGtgggcctgcaaggcgtgcaa	16	13	0	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_002478	exon1	c.G285T	p.L95L	CCTACTGTGGGCC		39	3	0.08	42	0	0				0	0					T	17741614	G	T	17741614	2	4	36	1	0	0	0	0	0	0	0	1	10135	1364	48	3		3	MYOD1	11	17741614	Silent	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10		17741614	117264902	35	2479											
ANO3	63982	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	26547227	26547227	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagcaaatcaatgggcagGttggtgggtgatgaatcatt	15	4	2	2	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	ANO3	NM_031418	exon7	c.737+1G>T	.	GGGCAGGTTGGTG		106	31	0.29	182	1	0.0054945055		145		0	0					T	26547227	G	T	26547227	5	4	36	1	0	0	0	0	0	0	1	0	692	1275	44	3	764	3	ANO3	11	26547227	Splice_Site	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	8805613	26547227	108459289	36	2480											
AMBRA1	55626	broad.mit.edu	37	chr11	46439570	46439570	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgacatgtctccgctggtcGgcaggcatgggataaaggac	14	10	1	1	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	AMBRA1	NM_001267782	exon17	c.C3018T	p.A1006A	CTGGTCGGCAGGC		87	3	0.03	92	0	0		201		49	0	0				A	46439570	G	A	46439570	2	1	36	1	0	0	0	0	0	0	0	1	561	1103	39	1		1	AMBRA1	11	46439570	Silent	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	19892343	46439570	88566946	37	2481											
OR10S1	219873	mdanderson.org	37	chr11	123848345	123848345	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtggctcaccacagtctgGttggggttctccgttgtcat	12	10	4	0	rs201821946	alternate_allele	TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_001004474	exon1	c.C54A	p.N18K	AGTCTGGTTGGGG		10	2	0.2	18	0	0				0	0					T	123848345	G	T	123848345	3	4	36	1	0	0	0	0	1	0	0	0	10965	1252	44	3	945	3	OR10S1	11	123848345	Missense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	77408775	123848345	11158171	38	2482											
ADAMTS15	170689	broad.mit.edu	37	chr11	130343024	130343024	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggttacaaagggctgatcGgggatgacaactacctggct	14	9	0	2	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	ADAMTS15,NS,carcinoma,0,3	ADAMTS15	NM_139055	exon8	c.G2161T	p.G721W	CTGATCGGGGATG		121	3	0.02	137	0	0		103	3	4	0	0				T	130343024	G	T	130343024	3	4	36	1	0	0	0	0	1	0	0	0	259	1116	39	1	2191	1	ADAMTS15	11	130343024	Missense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	6494679	130343024	4663492	39	2483											
LPAR5	57121	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	6729744	6729744	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgccgccgctggctctgcGtggcgtcggggcgcgccagc	17	17	1	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_001142961	exon2	c.C671A	p.T224K	CTCTGCGTGGCGT		108	11	0.1	58	0	0				9	0	0				T	6729744	G	T	6729744	3	4	36	1	0	0	0	0	1	0	0	0	8952	1145	40	1	451	1	LPAR5	12	6729744	Missense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10		6729744	127122151	40	2484											
PDE3A	0	broad.mit.edu	37	chr12	20522114	20522115	+	RNA	INS	-	-	GCGT													cgagggtggaattgggaagaINSgcgtgcgtgcgtgtgtgtgt					rs138187101	bycluster;by1000genomes	TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	PDE3A	.	.	.	.	GGGAAGAGCGTGC		24	11	0.46	9	0	0		184		6	0	0				GCGT	20522115	-	GCGT	20522114	6	5	36	0	1	1	1	0	0	0	0	0	11683	319	11	0		0	PDE3A	12	20522114	RNA	INS	-	TCGA-2G-AAGP-01A-11D-A42Y-10	13792370	20522114	113329781	41	2485											
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	43771347	43771347	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcctttgtctgtaactaaAtccacagttgtttgcacact	5	10	1	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_025003	exon32	c.T4816C	p.F1606L	AACTAAATCCACA		133	23	0.17	183	0	0				0	0					G	43771347	A	G	43771347	3	3	36	1	0	0	0	0	1	0	0	0	265	101	4	4	947	4	ADAMTS20	12	43771347	Missense_Mutation	SNP	A	TCGA-2G-AAGP-01A-11D-A42Y-10	23249233	43771347	90080548	42	2486											
DZIP1	22873	mdanderson.org	37	chr13	96239894	96239894	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaagctgcccttgttttgtGgtggcggcacaggaagtggg	17	8	0	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	DZIP1_ENST00000347108,NS,carcinoma,0,3	DZIP1_ENST00000347108	NM_198968	exon20	c.C2117A	p.P706Q	TTTTGTGGTGGCG		119	5	0.04	156	0	0		0	3	36	0	0				T	96239894	G	T	96239894	3	4	36	1	0	0	0	0	1	0	0	0	4889	1348	47	3	502	3	DZIP1	13	96239894	Missense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10		96239894	18929984	43	2487											
ARID4A	5926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	58832861	58832861	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gatctcctgcaagaatatccCcgcacatcaaagatggagag	9	11	2	3	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	ARID4A_ENST00000355431,NS,carcinoma,-2,2	ARID4A_ENST00000355431	NM_002892	exon22	c.C3436G	p.P1146A	ATATCCCCGCACA		152	31	0.2	172	0	0		-2	2	28	8	0.29				G	58832861	C	G	58832861	3	3	36	1	0	0	0	0	1	0	0	0	916	623	22	5	3518	5	ARID4A	14	58832861	Missense_Mutation	SNP	C	TCGA-2G-AAGP-01A-11D-A42Y-10		58832861	48516679	44	2488											
EIF3J	8669	broad.mit.edu	37	chr15	44829571	44829571	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcggaaggtggggggcggCggcactgccggcggggaccg	24	10	0	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	EIF3J	NM_003758	exon2	c.C93T	p.G31G	GGGCGGCGGCACT		74	3	0.04	78	0	0		29		40	0	0				T	44829571	C	T	44829571	2	4	36	1	0	0	0	0	0	0	0	1	5048	755	27	1		1	EIF3J	15	44829571	Silent	SNP	C	TCGA-2G-AAGP-01A-11D-A42Y-10		44829571	57701821	45	2489											
SPG11	80208	mdanderson.org	37	chr15	44955776	44955776	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caacagcatcggtagaacccGccccatggccgcggtgcccc	11	18	0	1	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_025137	exon1	c.C70A	p.R24R	GAACCCGCCCCAT		23	2	0.09	33	0	0				4	0	0				T	44955776	G	T	44955776	2	4	36	1	0	0	0	0	0	0	0	1	15096	1086	38	1		1	SPG11	15	44955776	Silent	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	126205	44955776	57575616	46	2490											
RASGRF1	5923	mdanderson.org	37	chr15	79382584	79382584	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtttctccagcggctccTtggccgacagcgccggcttg	12	16	1	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_002891	exon1	c.A257G	p.K86R	GGCTCCTTGGCCG		26	2	0.08	42	0	0				0	0					C	79382584	T	C	79382584	3	2	36	1	0	0	0	0	1	0	0	0	13123	1609	56	4	3676	4	RASGRF1	15	79382584	Missense_Mutation	SNP	T	TCGA-2G-AAGP-01A-11D-A42Y-10	34426808	79382584	23148808	47	2491											
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	101555582	101555582	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctttttcaccaccagaggTcgccagcgctccgggactga	11	15	1	2	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_024652	exon12	c.T1584A	p.G528G	CAGAGGTCGCCAG		83	20	0.24	107	0	0				9	2	0.22				A	101555582	T	A	101555582	2	1	36	1	0	0	0	0	0	0	0	1	9076	1654	58	5		5	LRRK1	15	101555582	Silent	SNP	T	TCGA-2G-AAGP-01A-11D-A42Y-10	22172998	101555582	975810	48	2492											
HN1L	90861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	1748931	1748931	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gccatgagccccggctggggCcgcggcctcgctctcacaac	13	18	1	1	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	HN1L,NS,carcinoma,-1,1	HN1L	NM_144570	exon5	c.C505G	p.P169A	CTGGGGCCGCGGC		61	8	0.13	55	0	0		-1	1	145	45	0.31				G	1748931	C	G	1748931	3	3	36	1	0	0	0	0	1	0	0	0	7290	739	26	5	523	5	HN1L	16	1748931	Missense_Mutation	SNP	C	TCGA-2G-AAGP-01A-11D-A42Y-10		1748931	88605822	49	2493											
TBL3	10607	mdanderson.org	37	chr16	2027606	2027606	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggacaaggtctgggggctgCactgcagccggctggacgac	17	11	1	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_006453	exon17	c.C1834T	p.H612Y	GGGCTGCACTGCA		70	4	0.06	70	0	0				137	0	0				T	2027606	C	T	2027606	3	4	36	1	0	0	0	0	1	0	0	0	15702	710	25	2	1900	2	TBL3	16	2027606	Missense_Mutation	SNP	C	TCGA-2G-AAGP-01A-11D-A42Y-10	278675	2027606	88327147	50	2494											
CREBBP	1387	mdanderson.org	37	chr16	3777828	3777828	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttcagctgggggagcattGcactctgttcggggttcccc	14	11	2	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_004380	exon31	c.C7220T	p.A2407V	AGCATTGCACTCT		70	5	0.07	79	0	0				222	0	0				A	3777828	G	A	3777828	3	1	36	1	0	0	0	0	1	0	0	0	3884	1319	46	2	112	2	CREBBP	16	3777828	Missense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	1750222	3777828	86576925	51	2495											
SEPHS2	22928	mdanderson.org	37	chr16	30456664	30456664	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaccagtgacaggccccCgtgcctcagggggatgacgc	14	15	1	2	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	.	.	.	.	GGCCCCCGTGCCT		38	3	0.08	44	0	0				134	0	0				A	30456664	C	A	30456664	3	1	36	1	0	0	0	0	1	0	0	0	14108	652	23	1	965	1	SEPHS2	16	30456664	Missense_Mutation	SNP	C	TCGA-2G-AAGP-01A-11D-A42Y-10	26678836	30456664	59898089	52	2496											
FTSJD1	0	ucsc.edu	37	chr16	71317853	71317853	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtggagtacaaagatcaaAccagccataaatcttgtgaa	8	8	2	2	rs200001480	byfrequency	TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	FTSJD1	NM_018348	exon3	c.T1971G	p.G657G	GATCAAACCAGCC		69	4	0.06	95	6	0.0631578947		70		39	5	0.13				C	71317853	A	C	71317853	2	2	36	1	0	0	0	0	0	0	0	1	6124	30	2	4		4	FTSJD1	16	71317853	Silent	SNP	A	TCGA-2G-AAGP-01A-11D-A42Y-10	40861189	71317853	19036900	53	2497											
ZFPM1	161882	ucsc.edu;bcgsc.ca	37	chr16	88552419	88552419	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacatggagcaaaaggccaCggcacctgaagccccgagcc	11	16	0	1	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	ZFPM1	NM_153813	exon2	c.C113T	p.T38M	AGGCCACGGCACC		38	4	0.11	61	0	0		32		26	0	0				T	88552419	C	T	88552419	3	4	36	1	0	0	0	0	1	0	0	0	17714	536	19	1	119	1	ZFPM1	16	88552419	Missense_Mutation	SNP	C	TCGA-2G-AAGP-01A-11D-A42Y-10	17234566	88552419	1802334	54	2498											
CDK10	8558	mdanderson.org	37	chr16	89761464	89761464	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcacttcctgttcatgtaCgaccctaagaaaaggtgctg	9	11	1	1	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_052988	exon11	c.C918T	p.Y306Y	CATGTACGACCCT		56	3	0.05	46	0	0				92	0	0				T	89761464	C	T	89761464	2	4	36	1	0	0	0	0	0	0	0	1	3147	547	19	1		1	CDK10	16	89761464	Silent	SNP	C	TCGA-2G-AAGP-01A-11D-A42Y-10	1209045	89761464	593289	55	2499											
SRCIN1	80725	mdanderson.org	37	chr17	36705442	36705442	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtatcggggcacggtcaaCtcatctgcaggcaccaaggg	14	12	3	0	rs372264724	alternate_allele	TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_025248	exon16	c.G2967T	p.E989D	GGTCAACTCATCT		27	3	0.11	35	0	0				7	0	0				A	36705442	C	A	36705442	3	1	36	1	0	0	0	0	1	0	0	0	15191	564	20	3	600	3	SRCIN1	17	36705442	Missense_Mutation	SNP	C	TCGA-2G-AAGP-01A-11D-A42Y-10		36705442	44489768	56	2500											
PYY	5697	broad.mit.edu	37	chr17	42030831	42030831	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actgtggtcaaggcgggccaCggcctgcgcacgaacaccat	13	14	1	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	PYY	NM_004160	exon5	c.G21A	p.P7P	GGGCCACGGCCTG		152	6	0.04	136	0	0		11		37	0	0				T	42030831	C	T	42030831	2	4	36	1	0	0	0	0	0	0	0	1	12919	523	19	1		1	PYY	17	42030831	Silent	SNP	C	TCGA-2G-AAGP-01A-11D-A42Y-10	5325389	42030831	39164379	57	2501											
MRC2	9902	mdanderson.org	37	chr17	60742301	60742301	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaggacctatgtgctctgCcctaccacggtgaggggccg	15	12	1	1	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_006039	exon2	c.C511T	p.P171S	GCTCTGCCCTACC		21	2	0.1	27	0	0				101	0	0				T	60742301	C	T	60742301	3	4	36	1	0	0	0	0	1	0	0	0	9806	739	26	2	517	2	MRC2	17	60742301	Missense_Mutation	SNP	C	TCGA-2G-AAGP-01A-11D-A42Y-10	18711470	60742301	20452909	58	2502											
LAMA1	284217	broad.mit.edu	37	chr18	7023227	7023227	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacacctttcacagtgggcGccatctgtgttccccaggca	10	15	2	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	LAMA1	NM_005559	exon19	c.C2637A	p.G879G	GTGGGCGCCATCT		104	4	0.04	99	0	0		458		15	0	0				T	7023227	G	T	7023227	2	4	36	1	0	0	0	0	0	0	0	1	8643	1074	38	1		1	LAMA1	18	7023227	Silent	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10		7023227	71054021	59	2503											
KATNAL2	83473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	44584611	44584611	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttccctcccttaggatgaTgaacgacagttgtcaaaatc	8	10	1	2	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_031303	exon4	c.T122C	p.M41T	GGATGATGAACGA		81	13	0.16	103	0	0				3	2	0.67				C	44584611	T	C	44584611	3	2	36	1	0	0	0	0	1	0	0	0	8029	1464	51	4	132	4	KATNAL2	18	44584611	Missense_Mutation	SNP	T	TCGA-2G-AAGP-01A-11D-A42Y-10	37561384	44584611	33492637	60	2504											
APC2	10297	mdanderson.org	37	chr19	1470177	1470177	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgactcggccgcggagaaaGccccggccactgcctccgcc	12	20	0	1	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_005883	exon15	c.G6877T	p.A2293S	GAGAAAGCCCCGG		38	3	0.08	44	0	0				0	0					T	1470177	G	T	1470177	3	4	36	1	0	0	0	0	1	0	0	0	760	971	34	2	6931	2	APC2	19	1470177	Missense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10		1470177	57658806	61	2505											
ZNF555	148254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	2853172	2853172	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagagaaaccctacgaatGcaaacagtgtgggaagacct	12	8	0	2	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_152791	exon4	c.G1109A	p.C370Y	ACGAATGCAAACA		115	12	0.1	183	0	0				5	3	0.6				A	2853172	G	A	2853172	3	1	36	1	0	0	0	0	1	0	0	0	18042	1319	46	2	1123	2	ZNF555	19	2853172	Missense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	1382995	2853172	56275811	62	2506											
LPHN1	22859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	14273727	14273727	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcccacgtgccctcaaagcGcagtgtgtaggggttcagct	12	13	2	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_001008701	exon6	c.C901T	p.R301C	CAAAGCGCAGTGT		63	12	0.19	70	0	0				46	16	0.35				A	14273727	G	A	14273727	3	1	36	1	0	0	0	0	1	0	0	0	8959	1087	38	1	3599	1	LPHN1	19	14273727	Missense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	11420555	14273727	44855256	63	2507											
CHERP	10523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	16636107	16636107	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtggggatagggcggccgctCgaaggggtgccgtggcggga	23	8	0	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_006387	exon10	c.G1687A	p.E563K	GCCGCTCGAAGGG		85	14	0.16	75	0	0				80	28	0.35				T	16636107	C	T	16636107	3	4	36	1	0	0	0	0	1	0	0	0	3358	893	31	1	1095	1	CHERP	19	16636107	Missense_Mutation	SNP	C	TCGA-2G-AAGP-01A-11D-A42Y-10	2362380	16636107	42492876	64	2508											
ZNF14	7561	broad.mit.edu	37	chr19	19823097	19823097	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttacatttataaggtcgagcCccagtgtgtattattacatg	8	7	0	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	ZNF14,NS,carcinoma,-1,1	ZNF14	NM_021030	exon4	c.G993A	p.G331G	TCGAGCCCCAGTG		101	3	0.03	143	0	0		89	1	4	0	0				T	19823097	C	T	19823097	2	4	36	1	0	0	0	0	0	0	0	1	17785	610	22	3		3	ZNF14	19	19823097	Silent	SNP	C	TCGA-2G-AAGP-01A-11D-A42Y-10	3186990	19823097	39305886	65	2509											
ZCCHC3	85364	broad.mit.edu	37	chr20	279150	279150	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatcgagctgcgccagggggAgggcggggtcaggcacttgc	20	10	1	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	ZCCHC3	NM_033089	exon1	c.A923G	p.E308G	AGGGGGAGGGCGG		66	3	0.05	110	3	0.0272727273		20		12	0	0				G	279150	A	G	279150	3	3	36	1	0	0	0	0	1	0	0	0	17646	304	11	4	925	4	ZCCHC3	20	279150	Missense_Mutation	SNP	A	TCGA-2G-AAGP-01A-11D-A42Y-10		279150	62746370	66	2510											
NDRG3	57446	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr20	35284911	35284911	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccttacctgaactacctGgggcagtcccccacagtccg	8	17	1	1	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	NDRG3	NM_032013	exon14	c.C883T	p.Q295X	CTACCTGGGGCAG		170	55	0.32	210	1	0.0047619048		32		26	0	0				A	35284911	G	A	35284911	4	1	36	1	0	0	0	0	0	1	0	0	10299	1357	47	3	256	3	NDRG3	20	35284911	Nonsense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	35005761	35284911	27740609	67	2511											
ZMYND8	23613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	45874864	45874864	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctctgaatcagagtccagGcccaaatggactgttgggga	12	10	2	2	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_183047	exon14	c.C2172T	p.G724G	GTCCAGGCCCAAA		184	32	0.17	211	0	0				72	27	0.38				A	45874864	G	A	45874864	2	1	36	1	0	0	0	0	0	0	0	1	17768	1190	42	2		2	ZMYND8	20	45874864	Silent	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	10589953	45874864	17150656	68	2512											
CBS	875	mdanderson.org	37	chr21	44478969	44478969	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatccaccacgggcgcctGgtcgaagcccttctcccgga	10	18	2	0	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_001178009	exon14	c.C1333A	p.Q445K	GCGCCTGGTCGAA		24	3	0.13	32	0	0				174	0	0				T	44478969	G	T	44478969	3	4	36	1	0	0	0	0	1	0	0	0	2729	1357	47	3	338	3	CBS	21	44478969	Missense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10		44478969	3650926	69	2513											
KREMEN1	83999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	29521294	29521294	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcttgcttctgtggaaacaAtcctgattactggaagtacg	10	8	1	1	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_001039570	exon5	c.A521G	p.N174S	GAAACAATCCTGA		80	17	0.21	116	0	0				12	4	0.33				G	29521294	A	G	29521294	3	3	36	1	0	0	0	0	1	0	0	0	8484	101	4	4	539	4	KREMEN1	22	29521294	Missense_Mutation	SNP	A	TCGA-2G-AAGP-01A-11D-A42Y-10		29521294	21783272	70	2514											
ARSF	416	broad.mit.edu	37	chrX	3030575	3030575	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggaagtctctcagcctcGgggtcctaacgagaagagat	13	9	2	3	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	ARSF	NM_004042	exon11	c.G1751A	p.R584Q	AGCCTCGGGGTCC		141	6	0.04	70	0	0		97		1	0	0				A	3030575	G	A	3030575	3	1	36	1	0	0	0	0	1	0	0	0	990	1116	39	1	1789	1	ARSF	23	3030575	Missense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10		3030575	152239985	71	2515											
RAI2	10742	broad.mit.edu	37	chrX	17819967	17819967	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggttcagaatggatgggGctggcacggtcaccagggcc	19	9	2	1	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	RAI2	NM_001172739	exon3	c.C164A	p.A55D	GATGGGGCTGGCA		208	5	0.02	120	0	0		66		25	0	0				T	17819967	G	T	17819967	3	4	36	1	0	0	0	0	1	0	0	0	13060	1203	42	2	1432	2	RAI2	23	17819967	Missense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	14789392	17819967	137450593	72	2516											
ZNF182	7569	mdanderson.org	37	chrX	47847944	47847944	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttccctctttgccttctGccatgagtagaagcttcctg	8	13	2	2	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	.	NM_006962	exon4	c.C52A	p.Q18K	CCTTCTGCCATGA		38	3	0.08	29	0	0				0	0					T	47847944	G	T	47847944	3	4	36	1	0	0	0	0	1	0	0	0	17807	1328	46	2	1883	2	ZNF182	23	47847944	Missense_Mutation	SNP	G	TCGA-2G-AAGP-01A-11D-A42Y-10	30027977	47847944	107422616	73	2517											
ATRX	546	broad.mit.edu	37	chrX	76938655	76938655	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaagaattacgcttatccTtttttctcactggaactgat	6	9	1	3	novel		TCGA-2G-AAGP-01A-11D-A42Y-10	TCGA-2G-AAGP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79a36367-9e68-4e76-af66-085a68c13add	2f54fd19-65e9-4992-a984-fc446f349244	.	ATRX	NM_000489	exon9	c.A2093G	p.K698R	TTATCCTTTTTTC		140	3	0.02	81	0	0		833		36	0	0				C	76938655	T	C	76938655	3	2	36	1	0	0	0	0	1	0	0	0	1206	1609	56	4	5493	4	ATRX	23	76938655	Missense_Mutation	SNP	T	TCGA-2G-AAGP-01A-11D-A42Y-10	29090711	76938655	78331905	74	2518											
PTCHD2	57540	mdanderson.org	37	chr1	11586864	11586864	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtttgacttcagcttctacGtggccaccaaggagcagcag	11	11	2	1	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_020780	exon13	c.G2770A	p.V924M	TTCTACGTGGCCA		31	3	0.1	33	0	0				9	0	0				A	11586864	G	A	11586864	3	1	37	1	0	0	0	0	1	0	0	0	12781	1145	40	1	2816	1	PTCHD2	1	11586864	Missense_Mutation	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10		11586864	237663757	1	2519											
PI4KB	5298	mdanderson.org	37	chr1	151288391	151288391	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcttaatggcatcacccacAtcctcatccatgtggatgta	8	12	2	0	rs1752379	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_002651	exon3	c.T603A	p.D201E	ACCCACATCCTCA		99	3	0.03	73	0	0				51	0	0				T	151288391	A	T	151288391	3	4	37	1	0	0	0	0	1	0	0	0	11921	214	8	5	1927	5	PI4KB	1	151288391	Missense_Mutation	SNP	A	TCGA-2G-AAGS-01A-11D-A42Y-10	139701527	151288391	97962230	2	2520											
FAM5B	0	broad.mit.edu	37	chr1	177247722	177247722	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agttccaggccctgctgaaaAggctgcccgatgaccggttc	12	13	0	2	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	FAM5B	NM_021165	exon7	c.A1036G	p.R346G	CTGAAAAGGCTGC		265	5	0.02	172	1	0.0058139535		191		0	0					G	177247722	A	G	177247722	3	3	37	1	0	0	0	0	1	0	0	0	5627	63	3	4	1058	4	FAM5B	1	177247722	Missense_Mutation	SNP	A	TCGA-2G-AAGS-01A-11D-A42Y-10	25959331	177247722	72002899	3	2521											
PHLDA3	23612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	201437676	201437676	+	Frame_Shift_Del	DEL	C	C	-													agcggaagtcgatctcgccgCccccttcggtcaccagcgtg					novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	PHLDA3,colon,carcinoma,0,1	PHLDA3	NM_012396	exon1	c.240delC	p.G80fs	TCGCCGCCCCCTT		241	71	0.29	289	0	0		11		290	0	0				-	201437676	C	-	201437676	7	5	37	1	0	1	0	1	0	0	0	0	11897	739	26	0	148	0	PHLDA3	1	201437676	Frame_Shift_Del	DEL	C	TCGA-2G-AAGS-01A-11D-A42Y-10	24189954	201437676	47812945	4	2522											
ERO1LB	56605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	236389708	236389708	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aagctcaatcaagtataaaaAgtaaagattcttgagccttc	6	7	3	2	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_019891	exon12	c.T913G	p.F305V	ATAAAAAGTAAAG		226	70	0.31	164	0	0				5	1	0.2				C	236389708	A	C	236389708	3	2	37	1	0	0	0	0	1	0	0	0	5268	72	3	4	510	4	ERO1LB	1	236389708	Missense_Mutation	SNP	A	TCGA-2G-AAGS-01A-11D-A42Y-10	34952032	236389708	12860913	5	2523											
LPIN1	23175	broad.mit.edu;mdanderson.org	37	chr2	11945257	11945257	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attggacccatcagggcatcGctaagctgtaccataaagtg	10	10	1	0	rs147550491		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	LPIN1	NM_001261428	exon18	c.G2371A	p.A791T	GGCATCGCTAAGC		95	4	0.04	91	0	0		99		10	0	0				A	11945257	G	A	11945257	3	1	37	1	0	0	0	0	1	0	0	0	8962	1087	38	1	2174	1	LPIN1	2	11945257	Missense_Mutation	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10		11945257	231254116	6	2524											
LHCGR	3973	broad.mit.edu	37	chr2	48982761	48982761	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcgtggcagcggcggctgcAgcagcagcagcagcttcagc	15	14	1	0	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	LHCGR	NM_000233	exon1	c.T50A	p.L17Q	GGCTGCAGCAGCA		27	3	0.11	31	0	0		154		0	0					T	48982761	A	T	48982761	3	4	37	1	0	0	0	0	1	0	0	0	8801	188	7	5	2093	5	LHCGR	2	48982761	Missense_Mutation	SNP	A	TCGA-2G-AAGS-01A-11D-A42Y-10	37037504	48982761	194216612	7	2525											
SERPINE2	5270	mdanderson.org	37	chr2	224866576	224866576	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggagcagatggaaggcagCgtcacagaggccaagaggaa	17	7	1	3	rs12436	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	SERPINE2_ENST00000447280,NS,carcinoma,-1,2	SERPINE2_ENST00000447280	NM_001136530	exon2	c.G78A	p.T26T	AGGCAGCGTCACA		45	3	0.07	59	0	0		-1	2	279	0	0				T	224866576	C	T	224866576	2	4	37	1	0	0	0	0	0	0	0	1	14165	755	27	1		1	SERPINE2	2	224866576	Silent	SNP	C	TCGA-2G-AAGS-01A-11D-A42Y-10	175883815	224866576	18332797	8	2526											
DGKG	1608	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	185975651	185975651	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccatgcttaccaatgcaaTccaaaatccagccaactgtc	5	15	0	0	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	DGKG	NM_001346	exon17	c.A1502G	p.D501G	ATGCAATCCAAAA		137	50	0.36	121	2	0.0165289256		98		0	0					C	185975651	T	C	185975651	3	2	37	1	0	0	0	0	1	0	0	0	4497	1435	50	4	909	4	DGKG	3	185975651	Missense_Mutation	SNP	T	TCGA-2G-AAGS-01A-11D-A42Y-10		185975651	12046779	9	2527											
POLN	353497	mdanderson.org	37	chr4	2082736	2082736	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgaagacatggatcatgGccagcttgcagaggtcagca	13	9	2	3	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_181808	exon21	c.C2336A	p.A779D	ATCATGGCCAGCT		35	3	0.09	63	0	0				0	0					T	2082736	G	T	2082736	3	4	37	1	0	0	0	0	1	0	0	0	12254	1203	42	2	382	2	POLN	4	2082736	Missense_Mutation	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10		2082736	189071540	10	2528											
RGS12	6002	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	3319740	3319740	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gaatgcaaagcatttttggtCcccatcgaaatgttcgaaag	9	8	0	0	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	RGS12	NM_002926	exon2	c.C1843T	p.P615S	TTTGGTCCCCATC		199	48	0.24	257	1	0.0038910506		128		19	11	0.58				T	3319740	C	T	3319740	3	4	37	1	0	0	0	0	1	0	0	0	13344	855	30	3	1845	3	RGS12	4	3319740	Missense_Mutation	SNP	C	TCGA-2G-AAGS-01A-11D-A42Y-10	1237004	3319740	187834536	11	2529											
KLHL2	11275	mdanderson.org	37	chr4	166220781	166220781	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaagagtgtccggacccgGctgaggacacccatgaacct	12	12	0	4	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_001161521	exon8	c.G906T	p.R302R	GACCCGGCTGAGG		40	3	0.08	45	0	0				11	0	0				T	166220781	G	T	166220781	2	4	37	1	0	0	0	0	0	0	0	1	8416	1190	42	2		2	KLHL2	4	166220781	Silent	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10	162901041	166220781	24933495	12	2530											
CCNO	10309	broad.mit.edu	37	chr5	54527462	54527462	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cggccagactcagctctgccAccccccgcgccagggcttgc	11	20	2	1	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	CCNO	NM_021147	exon3	c.T794G	p.V265G	TCTGCCACCCCCC		105	12	0.11	105	16	0.1523809524		17		9	1	0.11				C	54527462	A	C	54527462	3	2	37	1	0	0	0	0	1	0	0	0	2955	159	6	4	262	4	CCNO	5	54527462	Missense_Mutation	SNP	A	TCGA-2G-AAGS-01A-11D-A42Y-10		54527462	126387798	13	2531											
TCERG1	10915	broad.mit.edu	37	chr5	145836872	145836872	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctacggaggagatatggGttgaaaataaaactccagat	10	7	0	3	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	TCERG1	NM_006706	exon3	c.G412T	p.V138F	ATATGGGTTGAAA		128	5	0.04	87	0	0		148		73	0	0				T	145836872	G	T	145836872	3	4	37	1	0	0	0	0	1	0	0	0	15744	1261	44	3	422	3	TCERG1	5	145836872	Missense_Mutation	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10	91309410	145836872	35078388	14	2532											
TUBB	203068	mdanderson.org	37	chr6	30691668	30691668	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcccctctcaccagccgtGgaagccagcagtatcgagct	10	15	1	0	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	TUBB,NS,carcinoma,0,1	TUBB	NM_178014	exon4	c.G829T	p.G277X	AGCCGTGGAAGCC		50	3	0.06	62	0	0		0	1	6607	5	0				T	30691668	G	T	30691668	4	4	37	1	0	0	0	0	0	1	0	0	16813	1349	47	3	843	3	TUBB	6	30691668	Nonsense_Mutation	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10		30691668	140423399	15	2533											
INTS1	26173	broad.mit.edu	37	chr7	1527082	1527082	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gggggaggcctccgggggggCcccctgagggccacagggga	22	12	0	1	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	INTS1	NM_001080453	exon20	c.G2520C	p.G840G	GGGGGGCCCCCTG		121	5	0.04	104	2	0.0192307692		145		126	2	0.02				G	1527082	C	G	1527082	2	3	37	1	0	0	0	0	0	0	0	1	7818	726	26	5		5	INTS1	7	1527082	Silent	SNP	C	TCGA-2G-AAGS-01A-11D-A42Y-10		1527082	157611581	16	2534											
FKBP14	55033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	30058694	30058696	+	In_Frame_Del	DEL	AGG	AGG	-													ttggtccatttcgaatctccAggagatcaatattaaatatc					novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	AGG	AGG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	FKBP14	NM_017946	exon3	c.394_396del	p.132_132del	ATCTCCAGGAGAT		157	24	0.15	65	0	0		18		59	0	0				-	30058696	AGG	-	30058694	7	5	37	1	0	1	0	1	0	0	0	0	5936	188	7	0	248	0	FKBP14	7	30058694	In_Frame_Del	DEL	AGG	TCGA-2G-AAGS-01A-11D-A42Y-10	28531612	30058694	129079969	17	2535											
NCF1	653361	mdanderson.org	37	chr7	74202921	74202921	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtcgtccatccgcaacgcGcacagcatccaccagcggtc	10	17	0	0	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_000265	exon10	c.G924A	p.A308A	CAACGCGCACAGC		35	3	0.09	57	0	0				4	0	0				A	74202921	G	A	74202921	2	1	37	1	0	0	0	0	0	0	0	1	10262	1074	38	1		1	NCF1	7	74202921	Silent	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10	44144227	74202921	84935742	18	2536											
CTTNBP2	83992	bcgsc.ca	37	chr7	117407171	117407171	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acatcatgcacagtccgattGcacttgtctctcctttctgg	7	13	3	0	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	CTTNBP2	NM_033427	exon9	c.C2838T	p.C946C	CCGATTGCACTTG		53	4	0.08	58	0	0		200		4	0	0				A	117407171	G	A	117407171	2	1	37	1	0	0	0	0	0	0	0	1	4069	1311	46	2		2	CTTNBP2	7	117407171	Silent	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10	43204250	117407171	41731492	19	2537											
CNTNAP2	26047	ucsc.edu	37	chr7	148112542	148112542	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgattttcaccatcctgtGcaccctggtcttcctgatcc	8	14	2	2	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	CNTNAP2	NM_014141	exon24	c.G3830A	p.C1277Y	TCCTGTGCACCCT		31	4	0.13	53	0	0		392		20	0	0				A	148112542	G	A	148112542	3	1	37	1	0	0	0	0	1	0	0	0	3670	1319	46	2	3924	2	CNTNAP2	7	148112542	Missense_Mutation	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10	30705371	148112542	11026121	20	2538											
TMEM176B	28959	ucsc.edu	37	chr7	150489162	150489162	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accaggggctgggagctctgGccacacaagtttcgaagacc	13	12	1	1	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	TMEM176B	NM_014020	exon6	c.C702A	p.G234G	GCTCTGGCCACAC		37	4	0.11	62	0	0		36		60	0	0				T	150489162	G	T	150489162	2	4	37	1	0	0	0	0	0	0	0	1	16152	1190	42	2		2	TMEM176B	7	150489162	Silent	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10	2376620	150489162	8649501	21	2539											
ZFHX4	79776	broad.mit.edu	37	chr8	77617508	77617508	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgagctcagcagagcagccGctggggattacccaaatgcc	12	13	1	1	rs368515394		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	ZFHX4,NS,carcinoma,0,2	ZFHX4	NM_024721	exon2	c.G1185A	p.P395P	GCAGCCGCTGGGG		111	3	0.03	76	2	0.0263157895		878	2	3	0	0				A	77617508	G	A	77617508	2	1	37	1	0	0	0	0	0	0	0	1	17692	1074	38	1		1	ZFHX4	8	77617508	Silent	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10		77617508	68746514	22	2540											
COL14A1	7373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	121220569	121220569	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaatctatgcccacactgcTagtgaaggcctacggggaac	11	12	1	1	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_021110	exon11	c.T1290C	p.A430A	CACTGCTAGTGAA		88	13	0.15	45	0	0				74	15	0.2				C	121220569	T	C	121220569	2	2	37	1	0	0	0	0	0	0	0	1	3694	1509	53	4		4	COL14A1	8	121220569	Silent	SNP	T	TCGA-2G-AAGS-01A-11D-A42Y-10	43603061	121220569	25143453	23	2541											
OPLAH	26873	broad.mit.edu	37	chr8	145108284	145108284	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgcctggcgcccgcaggGcctccgtcaccgctggatgg	14	17	1	0	rs186909122	by1000genomes;alternate_allele	TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	OPLAH	NM_017570	exon20	c.C2699A	p.A900D	CGCAGGGCCTCCG		89	6	0.07	74	1	0.0135135135		78		13	0	0				T	145108284	G	T	145108284	3	4	37	1	0	0	0	0	1	0	0	0	10923	1203	42	2	1201	2	OPLAH	8	145108284	Missense_Mutation	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10	23887715	145108284	1255738	24	2542											
FAM120A	23196	mdanderson.org	37	chr9	96214208	96214208	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgccgccgccatgggcgtgcAgggcttccaggactacatcg	14	15	0	0	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_014612	exon1	c.A11T	p.Q4L	GCGTGCAGGGCTT		14	3	0.21	37	0	0				2	0	0				T	96214208	A	T	96214208	3	4	37	1	0	0	0	0	1	0	0	0	5446	188	7	5	13	5	FAM120A	9	96214208	Missense_Mutation	SNP	A	TCGA-2G-AAGS-01A-11D-A42Y-10		96214208	44999223	25	2543											
COL15A1	1306	bcgsc.ca	37	chr9	101798650	101798650	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accccctgggccgagagggcCacctgggcacatcaaggtct	13	15	2	1	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	COL15A1	NM_001855	exon21	c.C2381A	p.P794Q	GAGGGCCACCTGG		55	4	0.07	103	0	0		211		67	0	0				A	101798650	C	A	101798650	3	1	37	1	0	0	0	0	1	0	0	0	3695	594	21	3	2463	3	COL15A1	9	101798650	Missense_Mutation	SNP	C	TCGA-2G-AAGS-01A-11D-A42Y-10	5584442	101798650	39414781	26	2544											
TTC16	158248	mdanderson.org	37	chr9	130487072	130487072	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaacctggcctttgccgaGgcggactaccagcaggcgct	14	14	0	0	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_144965	exon9	c.G1155T	p.E385D	TGCCGAGGCGGAC		45	3	0.07	91	0	0				0	0					T	130487072	G	T	130487072	3	4	37	1	0	0	0	0	1	0	0	0	16744	991	35	3	1189	3	TTC16	9	130487072	Missense_Mutation	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10	28688422	130487072	10726359	27	2545											
FPGS	2356	mdanderson.org	37	chr9	130572100	130572100	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gccaggcgctgcagggccgcGagaggccgagcgggtgaggg	22	11	0	2	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_004957	exon12	c.G1198T	p.E400X	GGCCGCGAGAGGC		9	2	0.22	19	0	0				12	0	0				T	130572100	G	T	130572100	4	4	37	1	0	0	0	0	0	1	0	0	6069	1059	37	1	1244	1	FPGS	9	130572100	Nonsense_Mutation	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10	85028	130572100	10641331	28	2546											
SEC16A	9919	bcgsc.ca	37	chr9	139355646	139355646	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tacctggtcatgactcgggcGtgtgtccggctgtccatctt	12	12	2	1	rs375805476		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	SEC16A	NM_014866	exon13	c.C4974T	p.H1658H	TCGGGCGTGTGTC		59	4	0.07	99	0	0		249		57	0	0				A	139355646	G	A	139355646	2	1	37	1	0	0	0	0	0	0	0	1	14039	1136	40	1		1	SEC16A	9	139355646	Silent	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10	8783546	139355646	1857785	29	2547											
EBF3	253738	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	131676058	131676058	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tctccgcatatctcgagggtTgcctgcattcttcaaacagt	8	12	4	0	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_001005463	exon7	c.A610C	p.N204H	GAGGGTTGCCTGC		72	6	0.08	46	0	0				27	1	0.04				G	131676058	T	G	131676058	3	3	37	1	0	0	0	0	1	0	0	0	4908	1812	63	4	1085	4	EBF3	10	131676058	Missense_Mutation	SNP	T	TCGA-2G-AAGS-01A-11D-A42Y-10		131676058	3858689	30	2548											
MUC2	4583	mdanderson.org	37	chr11	1092971	1092971	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacggtgaccccaaccccaaCacccaccggcacacagaccc	6	21	0	2	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	MUC2_ENST00000441003,NS,carcinoma,0,1	MUC2_ENST00000441003	NM_002457	exon30	c.C4790T	p.T1597I	CCCCAACACCCAC		27	3	0.11	40	0	0		0	1	0	0					T	1092971	C	T	1092971	3	4	37	1	0	0	0	0	1	0	0	0	10022	478	17	3	4908	3	MUC2	11	1092971	Missense_Mutation	SNP	C	TCGA-2G-AAGS-01A-11D-A42Y-10		1092971	133913545	31	2549											
CDKN1C	1028	mdanderson.org	37	chr11	2906574	2906574	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggcgttcagctcggccaggCgggcctgcagctcgcggctc	16	16	1	0	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_000076	exon1	c.G146A	p.R49H	GCCAGGCGGGCCT		24	2	0.08	46	0	0				51	0	0				T	2906574	C	T	2906574	3	4	37	1	0	0	0	0	1	0	0	0	3182	768	27	1	812	1	CDKN1C	11	2906574	Missense_Mutation	SNP	C	TCGA-2G-AAGS-01A-11D-A42Y-10	1813603	2906574	132099942	32	2550											
TTC17	55761	ucsc.edu	37	chr11	43465665	43465665	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gatcataagaaaactcctggGaaaaaagtagaaacaggtca	9	6	2	2	rs377088555	alternate_allele	TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	TTC17	NM_018259	exon18	c.G2571A	p.G857G	TCCTGGGAAAAAA		151	1	0.01	167	0	0		112		63	8	0.13				A	43465665	G	A	43465665	2	1	37	1	0	0	0	0	0	0	0	1	16745	1161	41	3		3	TTC17	11	43465665	Silent	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10	40559091	43465665	91540851	33	2551											
FADS1	3992	mdanderson.org	37	chr11	61584183	61584183	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccaggtgaagtagcgcggGgtaggtccctgagccgcggt	17	11	0	2	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	FADS1,brain,glioma,0,1	FADS1	NM_013402	exon1	c.C219A	p.T73T	GCGCGGGGTAGGT		42	3	0.07	88	0	0		0	1	11	0	0				T	61584183	G	T	61584183	2	4	37	1	0	0	0	0	0	0	0	1	5396	1219	43	3		3	FADS1	11	61584183	Silent	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10	18118518	61584183	73422333	34	2552											
DPP3	10072	mdanderson.org	37	chr11	66276689	66276689	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgatgcccgattctggaaGggccccagtgaggccccatc	13	15	1	1	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_005700	exon18	c.G2181T	p.K727N	CTGGAAGGGCCCC		56	3	0.05	61	0	0				108	0	0				T	66276689	G	T	66276689	3	4	37	1	0	0	0	0	1	0	0	0	4754	991	35	3	2247	3	DPP3	11	66276689	Missense_Mutation	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10	4692506	66276689	68729827	35	2553											
TMPRSS13	84000	mdanderson.org	37	chr11	117780545	117780545	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagcagtgggcggcagtgAgcacccactgggcgtcaatg	16	10	1	2	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_001206790	exon8	c.T1085C	p.L362P	GCAGTGAGCACCC		25	3	0.12	57	0	0				5	0	0				G	117780545	A	G	117780545	3	3	37	1	0	0	0	0	1	0	0	0	16304	304	11	4	642	4	TMPRSS13	11	117780545	Missense_Mutation	SNP	A	TCGA-2G-AAGS-01A-11D-A42Y-10	51503856	117780545	17225971	36	2554											
ARHGEF12	23365	mdanderson.org	37	chr11	120347433	120347433	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagatttatgaactggtggCacagacagtttctgaaaaga	10	6	2	5	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_015313	exon34	c.C3341T	p.A1114V	TGGTGGCACAGAC		82	5	0.06	53	0	0				36	0	0				T	120347433	C	T	120347433	3	4	37	1	0	0	0	0	1	0	0	0	894	710	25	2	3475	2	ARHGEF12	11	120347433	Missense_Mutation	SNP	C	TCGA-2G-AAGS-01A-11D-A42Y-10	2566888	120347433	14659083	37	2555											
RBP5	0	broad.mit.edu	37	chr12	7281645	7281674	+	RNA	DEL	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	-													gttgcgcctgaccttggcttTtcctgaggaaggaacctgga					novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	RBP5	.	.	.	.	TGGCTTTTCCTGA		12	5	0.42	6	0	0		20		2	0	0				-	7281674	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	-	7281645	6	5	37	0	1	1	0	1	0	0	0	0	13210	1856	64	0		0	RBP5	12	7281645	RNA	DEL	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TCGA-2G-AAGS-01A-11D-A42Y-10		7281645	126570250	38	2556											
GRIN2B	2904	broad.mit.edu	37	chr12	13717472	13717472	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttggccgtgcgcagcagGcgcaggatgttggagtgtgt	17	8	1	0	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	GRIN2B,right_upper_lobe,carcinoma,-2,1	GRIN2B	NM_000834	exon13	c.C2700A	p.R900R	CAGCAGGCGCAGG		136	4	0.03	95	0	0		303	1	0	0					T	13717472	G	T	13717472	2	4	37	1	0	0	0	0	0	0	0	1	6820	1190	42	2		2	GRIN2B	12	13717472	Silent	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10	6435827	13717472	120134423	39	2557											
RARG	5916	mdanderson.org	37	chr12	53609159	53609159	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaccttgttgatgatacaGtttttgtcgcggtgacacgt	11	8	1	3	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_000966	exon5	c.C393A	p.N131K	GATACAGTTTTTG		110	5	0.05	114	1	0.0087719298				25	0	0				T	53609159	G	T	53609159	3	4	37	1	0	0	0	0	1	0	0	0	13105	1020	36	3	995	3	RARG	12	53609159	Missense_Mutation	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10	39891687	53609159	80242736	40	2558											
POSTN	10631	mdanderson.org	37	chr13	38145583	38145583	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caccttcaattttgacttttGttagtgtgggtcctgggaca	10	8	1	1	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_006475	exon18	c.C2102A	p.T701K	ACTTTTGTTAGTG		82	5	0.06	96	2	0.0208333333				207	0	0				T	38145583	G	T	38145583	3	4	37	1	0	0	0	0	1	0	0	0	12306	1377	48	3	432	3	POSTN	13	38145583	Missense_Mutation	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10		38145583	77024295	41	2559											
SQRDL	58472	mdanderson.org	37	chr15	45980603	45980603	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaaacaccaacaaagaagGtttgtatgccttgtaagaat	7	7	1	2	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_001271213	exon9	c.1116+1G>T	.	AAGAAGGTTTGTA		45	3	0.07	38	0	0				0	0					T	45980603	G	T	45980603	5	4	37	1	0	0	0	0	0	0	1	0	15184	1275	44	3	1143	3	SQRDL	15	45980603	Splice_Site	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10		45980603	56550789	42	2560											
MYO5A	4644	hgsc.bcm.edu	37	chr15	52662553	52662553	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cacttcgtagtttctcagtcTcagagttgtatattccttcc	6	11	2	1	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_000259	exon22	c.A2879G	p.E960G	TCAGTCTCAGAGT		95	4	0.04	101	0	0				10	0	0				C	52662553	T	C	52662553	3	2	37	1	0	0	0	0	1	0	0	0	10125	1551	54	4	2768	4	MYO5A	15	52662553	Missense_Mutation	SNP	T	TCGA-2G-AAGS-01A-11D-A42Y-10	6681950	52662553	49868839	43	2561											
ABCC6	368	ucsc.edu;bcgsc.ca	37	chr16	16251629	16251629	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcccgccctgaggccagGggggctgagctgcacatgtg	16	13	1	2	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	ABCC6	NM_001171	exon27	c.C3773A	p.P1258H	GGCCAGGGGGGCT		39	4	0.1	40	0	0		110		3	0	0				T	16251629	G	T	16251629	3	4	37	1	0	0	0	0	1	0	0	0	57	1232	43	3	758	3	ABCC6	16	16251629	Missense_Mutation	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10		16251629	74103124	44	2562											
RLTPR	146206	mdanderson.org	37	chr16	67683413	67683413	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgccagcgtcctactccggGccctagccaccaatcctaac	8	18	0	0	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_001013838	exon20	c.G1810T	p.A604S	CTCCGGGCCCTAG		18	2	0.11	30	0	0				14	0	0				T	67683413	G	T	67683413	3	4	37	1	0	0	0	0	1	0	0	0	13445	1203	42	2	1888	2	RLTPR	16	67683413	Missense_Mutation	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10	51431784	67683413	22671340	45	2563											
RANBP10	57610	mdanderson.org	37	chr16	67763875	67763875	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggttggggttgtgctccaGcagccctgggtagaagcgct	17	9	0	1	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_020850	exon8	c.C964A	p.L322M	GCTCCAGCAGCCC		46	3	0.07	57	0	0				32	0	0				T	67763875	G	T	67763875	3	4	37	1	0	0	0	0	1	0	0	0	13077	962	34	2	926	2	RANBP10	16	67763875	Missense_Mutation	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10	80462	67763875	22590878	46	2564											
ANKFY1	51479	mdanderson.org	37	chr17	4071123	4071123	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaacaaatgttgcaaacccGcacaggcttgttcagatcaa	7	10	2	1	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_001257999	exon25	c.C3586T	p.R1196W	AAACCCGCACAGG		80	4	0.05	90	0	0				46	0	0				A	4071123	G	A	4071123	3	1	37	1	0	0	0	0	1	0	0	0	622	1086	38	1	53	1	ANKFY1	17	4071123	Missense_Mutation	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10		4071123	77124087	47	2565											
SENP3	26168	mdanderson.org	37	chr17	7466636	7466636	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgaagaggaggaagaagaGgaggaggaggaggatgaaga	21	0	0	6	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_015670	exon2	c.G243A	p.E81E	AGAAGAGGAGGAG		123	5	0.04	123	0	0				127	0	0				A	7466636	G	A	7466636	2	1	37	1	0	0	0	0	0	0	0	1	14101	991	35	3		3	SENP3	17	7466636	Silent	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10	3395513	7466636	73728574	48	2566											
RAB11FIP4	84440	mdanderson.org	37	chr17	29761077	29761077	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggagctgctgaaggatgtGctgtcggtggagagcgcggg	21	6	0	2	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_032932	exon3	c.G273T	p.V91V	GGATGTGCTGTCG		20	2	0.1	17	0	0				7	0	0				T	29761077	G	T	29761077	2	4	37	1	0	0	0	0	0	0	0	1	12947	1306	46	2		2	RAB11FIP4	17	29761077	Silent	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10	22294441	29761077	51434133	49	2567											
MED1	5469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	37604156	37604156	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	atcttactcagcttttctgaCtctatgatttaaatcagaaa	4	8	5	3	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_004774	exon2	c.G27C	p.E9D	TTCTGACTCTATG		121	40	0.33	58	0	0				28	10	0.36				G	37604156	C	G	37604156	3	3	37	1	0	0	0	0	1	0	0	0	9474	579	20	5	4782	5	MED1	17	37604156	Missense_Mutation	SNP	C	TCGA-2G-AAGS-01A-11D-A42Y-10	7843079	37604156	43591054	50	2568											
UNC13D	201294	broad.mit.edu	37	chr17	73824882	73824882	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctaccgttgggtgcggggTacgtgaggggcaggcgggtc	21	9	0	1	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	UNC13D	NM_199242	exon31	c.A3137C	p.Y1046S	GCGGGGTACGTGA		36	8	0.22	51	5	0.0980392157		68		14	0	0				G	73824882	T	G	73824882	3	3	37	1	0	0	0	0	1	0	0	0	17046	1638	57	4	143	4	UNC13D	17	73824882	Missense_Mutation	SNP	T	TCGA-2G-AAGS-01A-11D-A42Y-10	36220726	73824882	7370328	51	2569											
CBX4	8535	bcgsc.ca	37	chr17	77809480	77809481	+	Frame_Shift_Ins	INS	-	-	CCGATATC													ttgggcttcggccctctcttINSccgatatcccatcagctgct					novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	CBX4	NM_003655	exon4	c.211_212insGATATCGG	p.K71fs	CTCTCTTCCGATA		45	3	0.07	73	0	0		40		6	0	0				CCGATATC	77809481	-	CCGATATC	77809480	7	5	37	1	0	1	1	0	0	0	0	0	2738	1792	62	0	1479	0	CBX4	17	77809480	Frame_Shift_Ins	INS	-	TCGA-2G-AAGS-01A-11D-A42Y-10	3984598	77809480	3385730	52	2570											
LAMA3	3909	mdanderson.org	37	chr18	21393036	21393036	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggttccagcagtgcttGtgacccagctggtaccatca	10	12	2	1	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_198129	exon14	c.G1757T	p.C586F	GTGCTTGTGACCC		37	3	0.08	35	0	0				1	0	0				T	21393036	G	T	21393036	3	4	37	1	0	0	0	0	1	0	0	0	8645	1377	48	3	1811	3	LAMA3	18	21393036	Missense_Mutation	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10		21393036	56684212	53	2571											
SERPINB8	5271	mdanderson.org	37	chr18	61649058	61649058	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatataaatgactgggtggCagagaagactgaaggtgaga	15	4	0	5	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	SERPINB8,NS,carcinoma,+1,1	SERPINB8	NM_198833	exon4	c.C410T	p.A137V	GGGTGGCAGAGAA		33	3	0.09	31	0	0		1	1	2	0	0				T	61649058	C	T	61649058	3	4	37	1	0	0	0	0	1	0	0	0	14160	710	25	2	420	2	SERPINB8	18	61649058	Missense_Mutation	SNP	C	TCGA-2G-AAGS-01A-11D-A42Y-10	40256022	61649058	16428190	54	2572											
RTTN	25914	hgsc.bcm.edu	37	chr18	67755229	67755229	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagacagacatacctccCggcgcaccatactacattct	6	14	1	2	rs75356692	bycluster;by1000genomes	TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	RTTN,NS,carcinoma,-1,1	RTTN	NM_173630	exon31	c.G4298A	p.R1433Q	ACCTCCCGGCGCA		71	3	0.04	79	0	0	0.001	-1	1	10	0	0				T	67755229	C	T	67755229	3	4	37	1	0	0	0	0	1	0	0	0	13788	652	23	1	2458	1	RTTN	18	67755229	Missense_Mutation	SNP	C	TCGA-2G-AAGS-01A-11D-A42Y-10	6106171	67755229	10322019	55	2573											
RFX1	5989	mdanderson.org	37	chr19	14073848	14073848	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggaggtggccagattggCgaactggaggaagaagagaa	18	5	0	3	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_002918	exon20	c.G2728A	p.A910T	GATTGGCGAACTG		46	3	0.07	89	0	0				173	0	0				T	14073848	C	T	14073848	3	4	37	1	0	0	0	0	1	0	0	0	13313	768	27	1	219	1	RFX1	19	14073848	Missense_Mutation	SNP	C	TCGA-2G-AAGS-01A-11D-A42Y-10		14073848	45055135	56	2574											
LPHN1	22859	mdanderson.org	37	chr19	14262420	14262420	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcttcccggcctcccaaGgggtgctctgcagggcagaa	14	14	1	1	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_001008701	exon24	c.C3690A	p.P1230P	TCCCAAGGGGTGC		20	2	0.1	30	0	0				96	0	0				T	14262420	G	T	14262420	2	4	37	1	0	0	0	0	0	0	0	1	8959	987	35	3		3	LPHN1	19	14262420	Silent	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10	188572	14262420	44866563	57	2575											
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	42796253	42796253	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cacagatcatccagctgaccCcggtgcctgtgagcacaccc	9	17	1	3	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_015125	exon12	c.C2902G	p.P968A	CTGACCCCGGTGC		67	19	0.28	128	0	0				53	20	0.38				G	42796253	C	G	42796253	3	3	37	1	0	0	0	0	1	0	0	0	3446	623	22	5	2948	5	CIC	19	42796253	Missense_Mutation	SNP	C	TCGA-2G-AAGS-01A-11D-A42Y-10	28533833	42796253	16332730	58	2576											
RASIP1	54922	mdanderson.org	37	chr19	49224143	49224143	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggaggcggcggagcctaCggagttcacggtgcaaggca	18	9	1	1	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	RASIP1,NS,NS,0,1	RASIP1	NM_017805	exon12	c.G2804A	p.R935H	AGCCTACGGAGTT		47	3	0.06	74	0	0		0	1	35	0	0				T	49224143	C	T	49224143	3	4	37	1	0	0	0	0	1	0	0	0	13129	536	19	1	91	1	RASIP1	19	49224143	Missense_Mutation	SNP	C	TCGA-2G-AAGS-01A-11D-A42Y-10	6427890	49224143	9904840	59	2577											
PTGIS	5740	mdanderson.org	37	chr20	48166687	48166687	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaaggcataccccaaccaGgggatgctgcccaggtccag	11	15	0	0	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_000961	exon2	c.C114A	p.P38P	CAACCAGGGGATG		41	3	0.07	45	0	0				22	0	0				T	48166687	G	T	48166687	2	4	37	1	0	0	0	0	0	0	0	1	12801	987	35	3		3	PTGIS	20	48166687	Silent	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10		48166687	14858833	60	2578											
CTCFL	140690	broad.mit.edu	37	chr20	56094264	56094264	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccttcccggcagttttaccTgtgtgggtgttaacatggtt	12	9	0	0	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	CTCFL	NM_001269044	exon3	c.A924G	p.T308T	TTTACCTGTGTGG		161	2	0.01	135	0	0		97		0	0					C	56094264	T	C	56094264	5	2	37	1	0	0	0	0	0	0	1	0	4025	1594	55	4	1099	4	CTCFL	20	56094264	Splice_Site	SNP	T	TCGA-2G-AAGS-01A-11D-A42Y-10	7927577	56094264	6931256	61	2579											
G6PD	2539	mdanderson.org	37	chrX	153762708	153762708	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccacgatgatgcggttccaGcctctgctgggagcccggag	14	13	1	1	rs80149725	bycluster	TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_000402	exon6	c.C579A	p.G193G	GTTCCAGCCTCTG		30	3	0.1	41	0	0				207	1	0				T	153762708	G	T	153762708	2	4	37	1	0	0	0	0	0	0	0	1	6180	958	34	2		2	G6PD	23	153762708	Silent	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10		153762708	1507852	62	2580											
ZFY	7544	mdanderson.org	37	chrY	2829680	2829680	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agctgtgaggactacctaatGatttcgtgtaagtcatgggg	13	6	1	2	novel		TCGA-2G-AAGS-01A-11D-A42Y-10	TCGA-2G-AAGS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	316c085e-6dd0-48c8-abc3-1653d58f11e4	f7149d2b-099b-4a37-a78b-54186de35097	.	.	NM_003411	exon3	c.G627T	p.M209I	CCTAATGATTTCG		16	2	0.13	27	1	0.037037037				13	0	0				T	2829680	G	T	2829680	3	4	37	1	0	0	0	0	1	0	0	0	17719	1290	45	3	633	3	ZFY	24	2829680	Missense_Mutation	SNP	G	TCGA-2G-AAGS-01A-11D-A42Y-10		2829680	56543886	63	2581											
SLC2A7	155184	mdanderson.org	37	chr1	9074853	9074853	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agacaggtggccctcggcgcGctcggcccgggcctccgcac	15	18	0	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	SLC2A7,NS,carcinoma,+2,1	SLC2A7	NM_207420	exon7	c.C790A	p.R264S	CGGCGCGCTCGGC		33	3	0.09	38	2	0.0526315789		2	1	0	0					T	9074853	G	T	9074853	3	4	38	1	0	0	0	0	1	0	0	0	14604	1087	38	1	772	1	SLC2A7	1	9074853	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10		9074853	240175768	1	2582											
AHDC1	27245	mdanderson.org	37	chr1	27878462	27878462	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgggttctcggagaaggcGtgggtggagaaggccttgtc	19	7	1	2	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001029882	exon6	c.C165T	p.H55H	GAAGGCGTGGGTG		26	2	0.08	41	0	0				5	0	0				A	27878462	G	A	27878462	2	1	38	1	0	0	0	0	0	0	0	1	409	1136	40	1		1	AHDC1	1	27878462	Silent	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	18803609	27878462	221372159	2	2583											
WDR65	149465	mdanderson.org	37	chr1	43652471	43652471	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcagaggaaactctggttGccagcaccagtaagaaccaa	9	12	2	2	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_152498	exon6	c.G1063T	p.A355S	CTGGTTGCCAGCA		44	3	0.07	50	0	0				2	0	0				T	43652471	G	T	43652471	3	4	38	1	0	0	0	0	1	0	0	0	17375	1319	46	2	1081	2	WDR65	1	43652471	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	15774009	43652471	205598150	3	2584											
TGFBR3	7049	hgsc.bcm.edu	37	chr1	92163669	92163669	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaaattggatttggttccTtcatgcttggacctttttct	9	7	2	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_003243	exon15	c.A2306G	p.K769R	GGTTCCTTCATGC		87	4	0.05	122	0	0				14	0	0				C	92163669	T	C	92163669	3	2	38	1	0	0	0	0	1	0	0	0	15882	1609	56	4	261	4	TGFBR3	1	92163669	Missense_Mutation	SNP	T	TCGA-2G-AAGT-01A-11D-A42Y-10	48511198	92163669	157086952	4	2585											
HORMAD1	84072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	150680868	150680868	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtagacaacatgctagattcGttgctttggtttttactaga	9	6	0	3	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_032132	exon9	c.C411T	p.N137N	AGATTCGTTGCTT		87	37	0.43	105	0	0				0	0					A	150680868	G	A	150680868	2	1	38	1	0	0	0	0	0	0	0	1	7326	1136	40	1		1	HORMAD1	1	150680868	Silent	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	58517199	150680868	98569753	5	2586											
NPR1	4881	mdanderson.org	37	chr1	153651756	153651756	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgggcgcgcgtgggacccGccgtggagctggccctggcc	19	15	0	0	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_000906	exon1	c.G172T	p.A58S	GGACCCGCCGTGG		10	2	0.2	15	0	0				1	0	0				T	153651756	G	T	153651756	3	4	38	1	0	0	0	0	1	0	0	0	10641	1087	38	1	174	1	NPR1	1	153651756	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	2970888	153651756	95598865	6	2587											
ILDR2	387597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	166904678	166904678	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacaccggagacagagggaGggtacccggcctttgctgct	16	11	0	2	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_199351	exon6	c.C740T	p.P247L	GAGGGAGGGTACC		68	18	0.26	74	0	0				0	0					A	166904678	G	A	166904678	3	1	38	1	0	0	0	0	1	0	0	0	7753	1000	35	3	1199	3	ILDR2	1	166904678	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	13252922	166904678	82345943	7	2588											
IARS2	55699	broad.mit.edu	37	chr1	220320874	220320874	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcttcctataaagtaattgTcatgccgactacgaaagaaa	7	8	2	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	IARS2	NM_018060	exon23	c.T2936C	p.V979A	TAATTGTCATGCC		96	3	0.03	107	0	0		106		344	0	0				C	220320874	T	C	220320874	3	2	38	1	0	0	0	0	1	0	0	0	7517	1667	58	4	3026	4	IARS2	1	220320874	Missense_Mutation	SNP	T	TCGA-2G-AAGT-01A-11D-A42Y-10	53416196	220320874	28929747	8	2589											
AIDA	64853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	222849452	222849454	+	In_Frame_Del	DEL	GTA	GTA	-													acttaccctttacactaactGtaatatagggatcgatgcac					novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	GTA	GTA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	AIDA	NM_022831	exon7	c.568_570del	p.190_190del	CTAACTGTAATAT		250	90	0.36	279	0	0		23		14	0	0				-	222849454	GTA	-	222849452	7	5	38	1	0	1	0	1	0	0	0	0	420	1377	48	0	367	0	AIDA	1	222849452	In_Frame_Del	DEL	GTA	TCGA-2G-AAGT-01A-11D-A42Y-10	2528578	222849452	26401169	9	2590											
ZNF672	79894	mdanderson.org	37	chr1	249142349	249142349	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gccacttgcggcaagggtttCgggcagcgctccgacctggt	15	13	0	0	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_024836	exon4	c.C876T	p.F292F	GGGTTTCGGGCAG		10	2	0.2	13	0	0				54	0	0				T	249142349	C	T	249142349	2	4	38	1	0	0	0	0	0	0	0	1	18135	883	31	1		1	ZNF672	1	249142349	Silent	SNP	C	TCGA-2G-AAGT-01A-11D-A42Y-10	26292897	249142349	108272	10	2591											
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	24080341	24080341	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gctaatccatctatttcatcAaaaaatattatagaaggtct	4	7	4	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001242338	exon13	c.T1512G	p.F504L	TTCATCAAAAAAT		437	134	0.31	371	0	0				1	0	0				C	24080341	A	C	24080341	3	2	38	1	0	0	0	0	1	0	0	0	1071	127	5	4	2928	4	ATAD2B	2	24080341	Missense_Mutation	SNP	A	TCGA-2G-AAGT-01A-11D-A42Y-10		24080341	219119032	11	2592											
USP39	10713	mdanderson.org	37	chr2	85866488	85866488	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccactcttcaacatcctgGctaagttcaatggcatcact	6	13	4	0	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001256725	exon9	c.G1258T	p.A420S	ATCCTGGCTAAGT		55	4	0.07	60	0	0				431	0	0				T	85866488	G	T	85866488	3	4	38	1	0	0	0	0	1	0	0	0	17129	1203	42	2	1292	2	USP39	2	85866488	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	61786147	85866488	157332885	12	2593											
PLEKHA3	65977	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	179355457	179355467	+	Frame_Shift_Del	DEL	AATGCAGCTGA	AATGCAGCTGA	-													atttctacatgaaggcagtgAatgcagctgaaagacagagg					novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	AATGCAGCTGA	AATGCAGCTGA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	PLEKHA3	NM_019091	exon3	c.228_238del	p.76_80del	GCAGTGAATGCAG		162	48	0.3	228	0	0		25		10	0	0				-	179355467	AATGCAGCTGA	-	179355457	7	5	38	1	0	1	0	1	0	0	0	0	12104	246	9	0	239	0	PLEKHA3	2	179355457	Frame_Shift_Del	DEL	AATGCAGCTGA	TCGA-2G-AAGT-01A-11D-A42Y-10	93488969	179355457	63843916	13	2594											
OBSL1	23363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	220416900	220416900	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gcggacttcaccggcgtcctCggcgcgcagctcgctaagca	13	16	1	0	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	OBSL1_ENST00000404537,NS,carcinoma,0,1	OBSL1_ENST00000404537	NM_015311	exon19	c.G5347A	p.E1783K	CGTCCTCGGCGCG		187	76	0.41	239	0	0		0	1	10	4	0.4				T	220416900	C	T	220416900	3	4	38	1	0	0	0	0	1	0	0	0	10860	893	31	1	355	1	OBSL1	2	220416900	Missense_Mutation	SNP	C	TCGA-2G-AAGT-01A-11D-A42Y-10	41061443	220416900	22782473	14	2595											
DLEC1	9940	mdanderson.org	37	chr3	38103804	38103804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttagaccacactgtggacaGcctgacatggaatttaactc	9	10	0	2	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_007335	exon4	c.G818A	p.S273N	TGGACAGCCTGAC		42	3	0.07	41	0	0				4	0	0				A	38103804	G	A	38103804	3	1	38	1	0	0	0	0	1	0	0	0	4580	971	34	2	832	2	DLEC1	3	38103804	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10		38103804	159918626	15	2596											
GMPPB	29925	mdanderson.org	37	chr3	49759234	49759234	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actcgccaatagacttgtggGgcagcacgctggctccgttg	13	12	0	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_013334	exon8	c.C1115A	p.P372H	TTGTGGGGCAGCA		40	3	0.08	41	0	0				208	0	0				T	49759234	G	T	49759234	3	4	38	1	0	0	0	0	1	0	0	0	6536	1232	43	3	52	3	GMPPB	3	49759234	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	11655430	49759234	148263196	16	2597											
GPR78	27201	mdanderson.org	37	chr4	8582800	8582800	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cactggtgctgctttgttgcGcctacagcgctgagctccgc	12	14	0	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_080819	exon1	c.G91T	p.A31S	TGTTGCGCCTACA		26	3	0.12	27	1	0.037037037				19	0	0				T	8582800	G	T	8582800	3	4	38	1	0	0	0	0	1	0	0	0	6749	1087	38	1	93	1	GPR78	4	8582800	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10		8582800	182571476	17	2598											
KIAA0947	23379	mdanderson.org	37	chr5	5464309	5464309	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agattgttctcctgacacacTgagtaaaatacggcaagagg	10	8	1	4	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_015325	exon13	c.T4862C	p.L1621P	ACACACTGAGTAA		34	3	0.09	43	0	0				27	0	0				C	5464309	T	C	5464309	3	2	38	1	0	0	0	0	1	0	0	0	8243	1580	55	4	4912	4	KIAA0947	5	5464309	Missense_Mutation	SNP	T	TCGA-2G-AAGT-01A-11D-A42Y-10		5464309	175450951	18	2599											
AMACR	23600	broad.mit.edu	37	chr5	34004802	34004802	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagattcagcggggcataCggattctcaccacttctgcc	11	12	3	1	rs368427062	alternate_allele	TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	AMACR	NM_014324	exon3	c.G429T	p.P143P	GGCATACGGATTC		376	5	0.01	483	0	0		38		33	0	0				A	34004802	C	A	34004802	2	1	38	1	0	0	0	0	0	0	0	1	558	523	19	1		1	AMACR	5	34004802	Silent	SNP	C	TCGA-2G-AAGT-01A-11D-A42Y-10	28540493	34004802	146910458	19	2600											
FEM1C	56929	mdanderson.org	37	chr5	114860256	114860256	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggatggttgttaagagcagCgatatgcaggggactgttgt	16	4	0	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_020177	exon3	c.G1603A	p.A535T	GAGCAGCGATATG		68	4	0.06	71	0	0				21	0	0				T	114860256	C	T	114860256	3	4	38	1	0	0	0	0	1	0	0	0	5843	768	27	1	254	1	FEM1C	5	114860256	Missense_Mutation	SNP	C	TCGA-2G-AAGT-01A-11D-A42Y-10	80855454	114860256	66055004	20	2601											
PCDHGA12	26025	mdanderson.org	37	chr5	140812465	140812465	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcgtcatcttgctgctggcGctcaggctgcggcgctggca	14	13	3	0	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_003735	exon1	c.G2139A	p.A713A	GCTGGCGCTCAGG		71	4	0.06	103	0	0				1	0	0				A	140812465	G	A	140812465	2	1	38	1	0	0	0	0	0	0	0	1	11599	1074	38	1		1	PCDHGA12	5	140812465	Silent	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	25952209	140812465	40102795	21	2602											
DPCR1	135656	mdanderson.org	37	chr6	30919170	30919170	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgaggacaccacaccatccTcagcagagcctacagaaaat	7	13	1	3	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_080870	exon2	c.T2929C	p.S977P	CCATCCTCAGCAG		43	3	0.07	59	0	0				2	0	0				C	30919170	T	C	30919170	3	2	38	1	0	0	0	0	1	0	0	0	4739	1551	54	4	2935	4	DPCR1	6	30919170	Missense_Mutation	SNP	T	TCGA-2G-AAGT-01A-11D-A42Y-10		30919170	140195897	22	2603											
HSP90AB1	3326	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	44218796	44218798	+	In_Frame_Del	DEL	AGA	AGA	-													ttctttcagcacttttctgtAgaaggtcagttggaattcag					novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	AGA	AGA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	HSP90AB1	NM_001271969	exon7	c.968_970del	p.323_324del	TTCTGTAGAAGGT		109	45	0.41	94	0	0		83		3495	0	0				-	44218798	AGA	-	44218796	7	5	38	1	0	1	0	1	0	0	0	0	7444	407	15	0	991	0	HSP90AB1	6	44218796	In_Frame_Del	DEL	AGA	TCGA-2G-AAGT-01A-11D-A42Y-10	13299626	44218796	126896271	23	2604											
TMEM184A	202915	mdanderson.org	37	chr7	1586698	1586698	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgggcgcctcgtgcgtggCctgctgcgtgtagtgctggt	17	12	0	0	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001097620	exon9	c.G1132A	p.A378T	GCGTGGCCTGCTG		39	3	0.08	27	0	0				23	0	0				T	1586698	C	T	1586698	3	4	38	1	0	0	0	0	1	0	0	0	16163	739	26	2	113	2	TMEM184A	7	1586698	Missense_Mutation	SNP	C	TCGA-2G-AAGT-01A-11D-A42Y-10		1586698	157551965	24	2605											
LRCH4	4034	mdanderson.org	37	chr7	100174944	100174944	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctctgctgctgctgccgcCgttcccgctcctgccacagc	10	20	1	0	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_002319	exon11	c.G1247A	p.R416Q	TGCCGCCGTTCCC		11	2	0.18	14	1	0.0714285714				101	0	0				T	100174944	C	T	100174944	3	4	38	1	0	0	0	0	1	0	0	0	8979	652	23	1	836	1	LRCH4	7	100174944	Missense_Mutation	SNP	C	TCGA-2G-AAGT-01A-11D-A42Y-10	98588246	100174944	58963719	25	2606											
ING3	54556	broad.mit.edu;mdanderson.org	37	chr7	120609078	120609078	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	atttaagatgaaggagggacGaagaacatcaagtttaaaag	11	3	1	3	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	ING3,NS,carcinoma,0,1	ING3	NM_019071	exon9	c.G728T	p.R243L	AGGGACGAAGAAC		81	4	0.05	60	0	0		36	1	35	0	0				T	120609078	G	T	120609078	3	4	38	1	0	0	0	0	1	0	0	0	7780	1058	37	1	778	1	ING3	7	120609078	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	20434134	120609078	38529585	26	2607											
DLGAP2	9228	mdanderson.org	37	chr8	1626714	1626714	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcgtggtttttgaagctgCtgcacgcagagacaaagagg	14	8	0	3	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_004745	exon9	c.C2383T	p.L795L	AAGCTGCTGCACG		22	3	0.14	48	0	0				0	0					T	1626714	C	T	1626714	2	4	38	1	0	0	0	0	0	0	0	1	4588	796	28	2		2	DLGAP2	8	1626714	Silent	SNP	C	TCGA-2G-AAGT-01A-11D-A42Y-10		1626714	144737308	27	2608											
MFHAS1	9258	bcgsc.ca	37	chr8	8750409	8750409	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccggcagcacgagctgggGggaggcgggggactcgagcg	23	10	0	0	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	MFHAS1	NM_004225	exon1	c.C160A	p.P54T	GCTGGGGGGAGGC		41	4	0.1	60	0	0		58		2	0	0				T	8750409	G	T	8750409	3	4	38	1	0	0	0	0	1	0	0	0	9570	1232	43	3	3010	3	MFHAS1	8	8750409	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	7123695	8750409	137613613	28	2609											
GSR	2936	mdanderson.org	37	chr8	30539555	30539555	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaaaagtcgatgggcaaGttttcggccagcagctattg	11	8	1	0	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_000637	exon11	c.C1177A	p.L393I	GGGCAAGTTTTCG		45	3	0.07	54	0	0				115	0	0				T	30539555	G	T	30539555	3	4	38	1	0	0	0	0	1	0	0	0	6868	1029	36	3	403	3	GSR	8	30539555	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	21789146	30539555	115824467	29	2610											
TEX15	56154	mdanderson.org	37	chr8	30704648	30704648	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	caaaatctggactttcagaaGaacaagtttctttaaactgg	7	7	3	2	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_031271	exon1	c.C1886A	p.S629Y	TCAGAAGAACAAG		40	3	0.08	91	0	0				0	0					T	30704648	G	T	30704648	3	4	38	1	0	0	0	0	1	0	0	0	15837	942	33	3	6499	3	TEX15	8	30704648	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	165093	30704648	115659374	30	2611											
RGS22	26166	broad.mit.edu	37	chr8	100990176	100990177	+	Frame_Shift_Ins	INS	-	-	G													ttcgtcttctaggactgccaINSatttttttttctgcttatta					novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	RGS22	NM_015668	exon23	c.3488_3489insC	p.L1163fs	ACTGCCAATTTTT		368	18	0.05	395	1	0.0025316456		319		1	0	0				G	100990177	-	G	100990176	7	5	38	1	0	1	1	0	0	0	0	0	13354	131	5	0	326	0	RGS22	8	100990176	Frame_Shift_Ins	INS	-	TCGA-2G-AAGT-01A-11D-A42Y-10	70285528	100990176	45373846	31	2612											
FBXO10	26267	broad.mit.edu	37	chr9	37516034	37516034	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggccttggcacggccccGcacggcgatgccgtaggccc	15	17	0	0	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	FBXO10,NS,carcinoma,0,1	FBXO10	NM_012166	exon10	c.C2563T	p.R855W	GGCCCCGCACGGC		116	4	0.03	132	0	0		75	1	28	0	0				A	37516034	G	A	37516034	3	1	38	1	0	0	0	0	1	0	0	0	5758	1086	38	1	315	1	FBXO10	9	37516034	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10		37516034	103697397	32	2613											
C9orf84	158401	bcgsc.ca;mdanderson.org	37	chr9	114480523	114480523	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taattgttaccagaagatgtAagagagcggcatgcttgaaa	11	5	0	4	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	C9orf84	NM_173521	exon14	c.T1985C	p.L662S	AGATGTAAGAGAG		41	4	0.1	74	0	0		207		0	0					G	114480523	A	G	114480523	3	3	38	1	0	0	0	0	1	0	0	0	2518	372	13	4	2401	4	C9orf84	9	114480523	Missense_Mutation	SNP	A	TCGA-2G-AAGT-01A-11D-A42Y-10	76964489	114480523	26732908	33	2614											
CDK5RAP2	55755	mdanderson.org	37	chr9	123215780	123215780	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagggcagcctgccacccaGgcaccccgtgcaggttctct	13	16	1	0	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_018249	exon21	c.C2747A	p.P916H	CACCCAGGCACCC		45	4	0.09	53	0	0				48	0	0				T	123215780	G	T	123215780	3	4	38	1	0	0	0	0	1	0	0	0	3168	1000	35	3	3006	3	CDK5RAP2	9	123215780	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	8735257	123215780	17997651	34	2615											
ENTPD8	377841	mdanderson.org	37	chr9	140329512	140329512	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccgggatcatcccggtcaGgttcagcatgtagcccagtg	14	12	3	0	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001033113	exon10	c.C1342A	p.L448M	CGGTCAGGTTCAG		42	3	0.07	32	0	0				3	0	0				T	140329512	G	T	140329512	3	4	38	1	0	0	0	0	1	0	0	0	5173	991	35	3	149	3	ENTPD8	9	140329512	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	17113732	140329512	883919	35	2616											
ALOX5	240	broad.mit.edu;bcgsc.ca	37	chr10	45935962	45935962	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttggccaaaatctgggtgCgttccagtgacttccacgtc	10	11	1	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	ALOX5	NM_001256153	exon8	c.C1066T	p.R356C	TGGGTGCGTTCCA		92	6	0.07	149	1	0.0067114094		88		32	0	0				T	45935962	C	T	45935962	3	4	38	1	0	0	0	0	1	0	0	0	536	768	27	1	1096	1	ALOX5	10	45935962	Missense_Mutation	SNP	C	TCGA-2G-AAGT-01A-11D-A42Y-10		45935962	89598785	36	2617											
JMJD1C	221037	mdanderson.org	37	chr10	64928259	64928259	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gttcctgtgttaaatgaaatGactctacaagatgttctgga	9	6	2	3	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_032776	exon25	c.C7469A	p.S2490X	TGAAATGACTCTA		45	3	0.07	102	0	0				60	0	0				T	64928259	G	T	64928259	4	4	38	1	0	0	0	0	0	1	0	0	7993	1294	45	3	161	3	JMJD1C	10	64928259	Nonsense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	18992297	64928259	70606488	37	2618											
DLG5	9231	mdanderson.org	37	chr10	79581756	79581756	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaagttccgtttgttatgaGcctggacctccgggccatgg	12	11	1	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_004747	exon15	c.C2486A	p.A829D	TTATGAGCCTGGA		45	3	0.07	57	0	0				55	0	0				T	79581756	G	T	79581756	3	4	38	1	0	0	0	0	1	0	0	0	4586	971	34	2	3345	2	DLG5	10	79581756	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	14653497	79581756	55952991	38	2619											
ITPRIP	85450	mdanderson.org	37	chr10	106075100	106075100	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatctggccgtagccctggCgatccaggggcactgagcgg	16	12	1	2	rs150063098	bycluster;by1000genomes	TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001272013	exon2	c.G710A	p.R237H	CCCTGGCGATCCA		42	3	0.07	62	0	0	0			7	0	0				T	106075100	C	T	106075100	3	4	38	1	0	0	0	0	1	0	0	0	7966	768	27	1	937	1	ITPRIP	10	106075100	Missense_Mutation	SNP	C	TCGA-2G-AAGT-01A-11D-A42Y-10	26493344	106075100	29459647	39	2620											
OR6A2	8590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	6816325	6816325	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agaataaaaatggccaggatGaaatctgtaagctctgctgt	10	6	2	2	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_003696	exon1	c.C615T	p.F205F	CAGGATGAAATCT		56	29	0.52	42	0	0				0	0					A	6816325	G	A	6816325	2	1	38	1	0	0	0	0	0	0	0	1	11232	1281	45	3		3	OR6A2	11	6816325	Silent	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10		6816325	128190191	40	2621											
LMO1	4004	mdanderson.org	37	chr11	8252027	8252027	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcccttctgcttccctttgGgctggacggagagcatcggc	13	13	1	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_002315	exon2	c.C50A	p.P17H	CCTTTGGGCTGGA		49	3	0.06	43	0	0				0	0					T	8252027	G	T	8252027	3	4	38	1	0	0	0	0	1	0	0	0	8891	1232	43	3	432	3	LMO1	11	8252027	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	1435702	8252027	126754489	41	2622											
TRIM44	54765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	35684815	35684815	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gaggcgcacaggcagaagttCctcagtcaccatctggccga	12	13	3	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_017583	exon1	c.C156A	p.F52L	GAAGTTCCTCAGT		51	17	0.33	44	0	0				41	8	0.2				A	35684815	C	A	35684815	3	1	38	1	0	0	0	0	1	0	0	0	16579	854	30	3	158	3	TRIM44	11	35684815	Missense_Mutation	SNP	C	TCGA-2G-AAGT-01A-11D-A42Y-10	27432788	35684815	99321701	42	2623											
RTN4RL2	349667	mdanderson.org	37	chr11	57244302	57244302	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgctgcctgccaggcgccccCggactcccgaggccctgcgc	13	21	0	0	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_178570	exon3	c.C1181G	p.P394R	CGCCCCCGGACTC		20	3	0.15	13	0	0				5	0	0				G	57244302	C	G	57244302	3	3	38	1	0	0	0	0	1	0	0	0	13783	652	23	5	1191	5	RTN4RL2	11	57244302	Missense_Mutation	SNP	C	TCGA-2G-AAGT-01A-11D-A42Y-10	21559487	57244302	77762214	43	2624											
DAK	26007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	61111415	61111415	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgggtagcccctgccgagcCccaggaggcccctgattcca	12	18	0	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_015533	exon12	c.C1070A	p.P357H	CCGAGCCCCAGGA		32	15	0.47	25	0	0				102	68	0.67				A	61111415	C	A	61111415	3	1	38	1	0	0	0	0	1	0	0	0	4252	623	22	3	1112	3	DAK	11	61111415	Missense_Mutation	SNP	C	TCGA-2G-AAGT-01A-11D-A42Y-10	3867113	61111415	73895101	44	2625											
CHRM1	1128	mdanderson.org	37	chr11	62677783	62677783	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagcagcctgggggcccGgcagcagcgacagcagcggc	17	15	0	0	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_000738	exon2	c.C790T	p.R264W	GGGCCCGGCAGCA		51	4	0.08	41	0	0				0	0					A	62677783	G	A	62677783	3	1	38	1	0	0	0	0	1	0	0	0	3398	1115	39	1	596	1	CHRM1	11	62677783	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	1566368	62677783	72328733	45	2626											
ANO1	55107	broad.mit.edu	37	chr11	69951865	69951865	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acttgtctgataaggattccTttttcgacagcaaaacccgg	8	10	1	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	ANO1_ENST00000355303,NS,carcinoma,0,2	ANO1	NM_018043	exon5	c.T718C	p.F240L	GATTCCTTTTTCG		118	3	0.03	145	0	0		156	2	1	0	0				C	69951865	T	C	69951865	3	2	38	1	0	0	0	0	1	0	0	0	689	1609	56	4	736	4	ANO1	11	69951865	Missense_Mutation	SNP	T	TCGA-2G-AAGT-01A-11D-A42Y-10	7274082	69951865	65054651	46	2627											
MAML2	84441	broad.mit.edu;mdanderson.org	37	chr11	95825254	95825254	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttgttgctgctgctgctgCtgttgttgctgctgctgctg	14	9	0	0	rs61749250	bycluster	TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	MAML2,caecum,carcinoma,0,2	MAML2	NM_032427	exon2	c.G1941A	p.Q647Q	CTGCTGCTGTTGT		74	4	0.05	63	1	0.0158730159		94	2	12	0	0				T	95825254	C	T	95825254	2	4	38	1	0	0	0	0	0	0	0	1	9255	796	28	2		2	MAML2	11	95825254	Silent	SNP	C	TCGA-2G-AAGT-01A-11D-A42Y-10	25873389	95825254	39181262	47	2628											
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	105797664	105797664	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	atcaacaaaagaattcttcaGagtaagttaagggaaaaact	7	5	3	2	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001077243	exon13	c.G2045C	p.R682T	TCTTCAGAGTAAG		88	27	0.31	96	0	0				0	0					C	105797664	G	C	105797664	3	2	38	1	0	0	0	0	1	0	0	0	6810	956	33	5	2128	5	GRIA4	11	105797664	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	9972410	105797664	29208852	48	2629											
BCO2	83875	mdanderson.org	37	chr11	112050195	112050195	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctgggaaattcgagtttGggaaggataagtaagccttg	14	5	0	0	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001256398	exon2	c.G283T	p.G95W	GAGTTTGGGAAGG		41	3	0.07	58	0	0				1	0	0				T	112050195	G	T	112050195	3	4	38	1	0	0	0	0	1	0	0	0	1383	1348	47	3	289	3	BCO2	11	112050195	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	6252531	112050195	22956321	49	2630											
DSCAML1	57453	mdanderson.org	37	chr11	117376428	117376428	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcgggtgggaattcgaaGggctggatcagagggggcac	21	6	1	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_020693	exon9	c.C1983A	p.P661P	TTCGAAGGGCTGG		15	3	0.2	20	0	0				15	0	0				T	117376428	G	T	117376428	2	4	38	1	0	0	0	0	0	0	0	1	4795	987	35	3		3	DSCAML1	11	117376428	Silent	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	5326233	117376428	17630088	50	2631											
RBP5	0	broad.mit.edu	37	chr12	7281645	7281674	+	RNA	DEL	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	-													gttgcgcctgaccttggcttTtcctgaggaaggaacctgga					novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	RBP5	.	.	.	.	TGGCTTTTCCTGA		7	2	0.29	7	0	0		20		35	0	0				-	7281674	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	-	7281645	6	5	38	0	1	1	0	1	0	0	0	0	13210	1856	64	0		0	RBP5	12	7281645	RNA	DEL	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TCGA-2G-AAGT-01A-11D-A42Y-10		7281645	126570250	51	2632											
UTP20	27340	mdanderson.org	37	chr12	101763632	101763632	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaaagctcggggccgccaGgggccagaacttccaccttg	13	14	0	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_014503	exon49	c.G6518T	p.R2173M	CCGCCAGGGGCCA		46	3	0.07	57	0	0				35	0	0				T	101763632	G	T	101763632	3	4	38	1	0	0	0	0	1	0	0	0	17158	1000	35	3	6712	3	UTP20	12	101763632	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	94481987	101763632	32088263	52	2633											
RPLP0	6175	hgsc.bcm.edu;bcgsc.ca	37	chr12	120634676	120634690	+	In_Frame_Del	DEL	GTGGCAGCAGCCACA	GTGGCAGCAGCCACA	-													cagcagcaggagcagctgtgGtggcagcagccacaggggca					novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	GTGGCAGCAGCCACA	GTGGCAGCAGCCACA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	RPLP0	NM_053275	exon8	c.841_855del	p.281_285del	GCTGTGGTGGCAG		211	59	0.28	225	0	0		27		4632	0	0				-	120634690	GTGGCAGCAGCCACA	-	120634676	7	5	38	1	0	1	0	1	0	0	0	0	13655	1261	44	0	103	0	RPLP0	12	120634676	In_Frame_Del	DEL	GTGGCAGCAGCCACA	TCGA-2G-AAGT-01A-11D-A42Y-10	18871044	120634676	13217219	53	2634											
LAMP1	3916	mdanderson.org	37	chr13	113965084	113965084	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tatagataaaaaatacagatGtgttagtggcacccaggtcc	9	7	0	2	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_005561	exon4	c.G464T	p.C155F	ACAGATGTGTTAG		38	3	0.08	57	0	0				522	0	0				T	113965084	G	T	113965084	3	4	38	1	0	0	0	0	1	0	0	0	8655	1377	48	3	478	3	LAMP1	13	113965084	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10		113965084	1204794	54	2635											
RPGRIP1	57096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	21798426	21798426	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcaggtgaattacactgagTggaagttctcagagactaac	11	7	1	3	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_020366	exon19	c.T3118C	p.W1040R	ACTGAGTGGAAGT		35	16	0.46	50	0	0				0	0					C	21798426	T	C	21798426	3	2	38	1	0	0	0	0	1	0	0	0	13600	1696	59	4	3192	4	RPGRIP1	14	21798426	Missense_Mutation	SNP	T	TCGA-2G-AAGT-01A-11D-A42Y-10		21798426	85551114	55	2636											
PRKCH	5583	mdanderson.org	37	chr14	62016448	62016448	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgaccctgacttcataaagGaagagccagttttaactcca	7	10	1	3	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_006255	exon14	c.G1951T	p.E651X	ATAAAGGAAGAGC		27	3	0.11	64	0	0				11	0	0				T	62016448	G	T	62016448	4	4	38	1	0	0	0	0	0	1	0	0	12564	1175	41	3	2005	3	PRKCH	14	62016448	Nonsense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	40218022	62016448	45333092	56	2637											
PLEKHH1	57475	mdanderson.org	37	chr14	68024067	68024067	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gcctgcaccggaaataccaaGaattgctgaaagccataaag	9	10	0	2	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_020715	exon4	c.G271T	p.E91X	TACCAAGAATTGC		33	3	0.09	39	0	0				17	0	0				T	68024067	G	T	68024067	4	4	38	1	0	0	0	0	0	1	0	0	12123	943	33	3	281	3	PLEKHH1	14	68024067	Nonsense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	6007619	68024067	39325473	57	2638											
ZDHHC22	283576	broad.mit.edu	37	chr14	77600225	77600225	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcagaagccggcgcagGccaggccgatggcgaaccag	17	13	0	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	ZDHHC22	NM_174976	exon3	c.C593A	p.A198D	GCGCAGGCCAGGC		72	6	0.08	87	0	0		30		0	0					T	77600225	G	T	77600225	3	4	38	1	0	0	0	0	1	0	0	0	17670	1203	42	2	202	2	ZDHHC22	14	77600225	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	9576158	77600225	29749315	58	2639											
DLK1	8788	ucsc.edu;bcgsc.ca	37	chr14	101195284	101195284	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccattgcaggtgccagcctgGctggcagggtcccctttgtg	14	13	0	0	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	DLK1	NM_003836	exon3	c.G143A	p.G48D	AGCCTGGCTGGCA		36	4	0.11	42	0	0		57		13	0	0				A	101195284	G	A	101195284	3	1	38	1	0	0	0	0	1	0	0	0	4592	1203	42	2	153	2	DLK1	14	101195284	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	23595059	101195284	6154256	59	2640											
PPP1R14D	54866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr15	41108371	41108371	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctagcccccatcctacctcCagctgagtcttctgctcctc	5	19	3	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001130143	exon3	c.G452A	p.W151X	TACCTCCAGCTGA		68	26	0.38	89	0	0				0	0					T	41108371	C	T	41108371	4	4	38	1	0	0	0	0	0	1	0	0	12410	595	21	3	162	3	PPP1R14D	15	41108371	Nonsense_Mutation	SNP	C	TCGA-2G-AAGT-01A-11D-A42Y-10		41108371	61423021	60	2641											
CCDC64B	146439	mdanderson.org	37	chr16	3080740	3080740	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtcctcagctctgctccaGccagtgcctgagcctggcac	11	17	2	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001103175	exon3	c.C572A	p.A191D	GCTCCAGCCAGTG		42	3	0.07	42	0	0				21	0	0				T	3080740	G	T	3080740	3	4	38	1	0	0	0	0	1	0	0	0	2856	971	34	2	982	2	CCDC64B	16	3080740	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10		3080740	87274013	61	2642											
KDM6B	23135	mdanderson.org	37	chr17	7751802	7751802	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggagccctttgcatctctGcagtctcctttccccaccga	7	16	2	0	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	KDM6B,NS,carcinoma,+2,1	KDM6B	NM_001080424	exon11	c.G2196T	p.L732L	ATCTCTGCAGTCT		29	3	0.1	46	0	0		2	1	32	0	0				T	7751802	G	T	7751802	2	4	38	1	0	0	0	0	0	0	0	1	8180	1306	46	2		2	KDM6B	17	7751802	Silent	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10		7751802	73443408	62	2643											
MRM1	79922	mdanderson.org	37	chr17	34958334	34958334	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatggggagcggcctggtgGggaggagctaagccgcttgc	20	9	0	0	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_024864	exon1	c.G95T	p.G32V	CTGGTGGGGAGGA		22	3	0.14	33	0	0				35	0	0				T	34958334	G	T	34958334	3	4	38	1	0	0	0	0	1	0	0	0	9819	1232	43	3	97	3	MRM1	17	34958334	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	27206532	34958334	46236876	63	2644											
HEXIM2	124790	mdanderson.org	37	chr17	43246847	43246847	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gggagagtgaggccggggacAgtgatgggcggggccgagcg	24	7	0	3	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_144608	exon4	c.A532T	p.S178C	GGGGACAGTGATG		41	3	0.07	80	0	0				56	0	0				T	43246847	A	T	43246847	3	4	38	1	0	0	0	0	1	0	0	0	7117	188	7	5	538	5	HEXIM2	17	43246847	Missense_Mutation	SNP	A	TCGA-2G-AAGT-01A-11D-A42Y-10	8288513	43246847	37948363	64	2645											
AP3D1	8943	mdanderson.org	37	chr19	2102188	2102188	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctcaacacttggccagcGtcgccttcatctcttctaac	6	16	4	0	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001261826	exon32	c.C3632A	p.T1211K	GCCAGCGTCGCCT		44	3	0.07	64	0	0				431	0	0				T	2102188	G	T	2102188	3	4	38	1	0	0	0	0	1	0	0	0	742	1145	40	1	19	1	AP3D1	19	2102188	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10		2102188	57026795	65	2646											
DOHH	83475	mdanderson.org	37	chr19	3491805	3491805	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagagggcgctcccacagtgCagacctgcaggggagaggga	17	10	0	3	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001145165	exon5	c.G594A	p.L198L	ACAGTGCAGACCT		25	3	0.12	45	0	0				44	0	0				T	3491805	C	T	3491805	2	4	38	1	0	0	0	0	0	0	0	1	4722	697	25	2		2	DOHH	19	3491805	Silent	SNP	C	TCGA-2G-AAGT-01A-11D-A42Y-10	1389617	3491805	55637178	66	2647											
TBXA2R	6915	mdanderson.org	37	chr19	3600390	3600390	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggacaccacgatggtaccGgtcaccagcagccccaggaa	12	14	1	0	rs5745	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001060	exon2	c.C243A	p.T81T	GGTACCGGTCACC		48	3	0.06	57	0	0				2	0	0				T	3600390	G	T	3600390	2	4	38	1	0	0	0	0	0	0	0	1	15722	1103	39	1		1	TBXA2R	19	3600390	Silent	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	108585	3600390	55528593	67	2648											
CD97	976	mdanderson.org	37	chr19	14512474	14512474	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcccctcagagctgacccTgatgatccaggagcgggggg	14	13	2	4	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_078481	exon11	c.T1085C	p.L362P	TGACCCTGATGAT		44	3	0.07	71	0	0				30	0	0				C	14512474	T	C	14512474	3	2	38	1	0	0	0	0	1	0	0	0	3071	1580	55	4	1127	4	CD97	19	14512474	Missense_Mutation	SNP	T	TCGA-2G-AAGT-01A-11D-A42Y-10	10912084	14512474	44616509	68	2649											
ZNF253	56242	broad.mit.edu	37	chr19	20003204	20003204	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttaaccattccacaacccTtttttcacatgagaaaattc	2	11	1	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	ZNF253	NM_021047	exon4	c.T1148C	p.L383P	CAACCCTTTTTTC		78	3	0.04	124	1	0.0080645161		99		20	0	0				C	20003204	T	C	20003204	3	2	38	1	0	0	0	0	1	0	0	0	17854	1609	56	4	1162	4	ZNF253	19	20003204	Missense_Mutation	SNP	T	TCGA-2G-AAGT-01A-11D-A42Y-10	5490730	20003204	39125779	69	2650											
CAPNS1	826	bcgsc.ca	37	chr19	36632054	36632054	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcggcggcggcggcggCggtggtggaggcggcggtgg	28	9	0	0	rs17879825		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	CAPNS1	NM_001749	exon2	c.C141T	p.G47G	CGGCGGCGGTGGT		104	8	0.08	139	2	0.0143884892		19		3	0	0				T	36632054	C	T	36632054	2	4	38	1	0	0	0	0	0	0	0	1	2651	755	27	1		1	CAPNS1	19	36632054	Silent	SNP	C	TCGA-2G-AAGT-01A-11D-A42Y-10	16628850	36632054	22496929	70	2651											
FCGBP	8857	mdanderson.org	37	chr19	40433368	40433368	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtagagtggccaggatgGccggacctcaaactctacca	12	12	2	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	FCGBP,colon,carcinoma,0,1	FCGBP	NM_003890	exon2	c.C901T	p.P301S	AGGATGGCCGGAC		31	3	0.1	32	0	0		0	1	3	0	0				A	40433368	G	A	40433368	3	1	38	1	0	0	0	0	1	0	0	0	5810	1203	42	2	15456	2	FCGBP	19	40433368	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	3801314	40433368	18695615	71	2652											
HSD17B14	51171	mdanderson.org	37	chr19	49337583	49337583	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggataaagacagctccagGgagctcctgctccagggccc	13	13	0	1	rs11547571	alternate_allele	TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_016246	exon3	c.C160T	p.P54S	CTCCAGGGAGCTC		36	3	0.08	41	0	0				233	0	0				A	49337583	G	A	49337583	3	1	38	1	0	0	0	0	1	0	0	0	7423	1232	43	3	680	3	HSD17B14	19	49337583	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	8904215	49337583	9791400	72	2653											
SIGLEC10	89790	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	51919248	51919248	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagccttcaccccgggcaGctccagccccaggggtctag	11	19	2	0	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	SIGLEC10	NM_001171157	exon5	c.C928T	p.L310L	CGGGCAGCTCCAG		82	13	0.16	112	0	0		112		6	0	0				A	51919248	G	A	51919248	2	1	38	1	0	0	0	0	0	0	0	1	14360	962	34	2		2	SIGLEC10	19	51919248	Silent	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	2581665	51919248	7209735	73	2654											
ZNF320	162967	mdanderson.org	37	chr19	53384632	53384632	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgactaaaggtcttgccacaCtcattacacttataaggttt	6	9	2	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_207333	exon4	c.G747T	p.E249D	GCCACACTCATTA		47	3	0.06	86	1	0.011627907				20	0	0				A	53384632	C	A	53384632	3	1	38	1	0	0	0	0	1	0	0	0	17895	564	20	3	786	3	ZNF320	19	53384632	Missense_Mutation	SNP	C	TCGA-2G-AAGT-01A-11D-A42Y-10	1465384	53384632	5744351	74	2655											
ZNF772	400720	hgsc.bcm.edu;mdanderson.org	37	chr19	57984888	57984888	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaacttcccacatgcgatGcactcataaggccttgctcc	7	14	1	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_001024596	exon5	c.C1224A	p.C408X	TGCGATGCACTCA		65	15	0.23	88	0	0				1	0	0				T	57984888	G	T	57984888	4	4	38	1	0	0	0	0	0	1	0	0	18193	1311	46	2	249	2	ZNF772	19	57984888	Nonsense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	4600256	57984888	1144095	75	2656											
MACROD2	140733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	13982939	13982939	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cttttattttgcaagaacgtTtattgaagatgaccttagaa	7	5	0	5	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_080676	exon2	c.T52G	p.L18V	GAACGTTTATTGA		76	15	0.2	72	0	0				1	0	0				G	13982939	T	G	13982939	3	3	38	1	0	0	0	0	1	0	0	0	9191	1838	64	4	58	4	MACROD2	20	13982939	Missense_Mutation	SNP	T	TCGA-2G-AAGT-01A-11D-A42Y-10		13982939	49042581	76	2657											
LAMA5	3911	ucsc.edu;bcgsc.ca	37	chr20	60892038	60892038	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcgttggaggcctcgatgGccctctgggtgaggcggtcc	18	11	1	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	LAMA5	NM_005560	exon56	c.C7553T	p.A2518V	TCGATGGCCCTCT		28	4	0.14	46	0	0		268		130	0	0				A	60892038	G	A	60892038	3	1	38	1	0	0	0	0	1	0	0	0	8647	1203	42	2	3634	2	LAMA5	20	60892038	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	46909099	60892038	2133482	77	2658											
ZNF512B	57473	mdanderson.org	37	chr20	62594010	62594010	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcgggccagctcgtcctccGctatctcctgcaggtggaac	12	16	1	0	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_020713	exon13	c.C2093T	p.A698V	TCCTCCGCTATCT		38	3	0.08	49	0	0				49	0	0				A	62594010	G	A	62594010	3	1	38	1	0	0	0	0	1	0	0	0	18013	1087	38	1	605	1	ZNF512B	20	62594010	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	1701972	62594010	431510	78	2659											
VPREB3	29802	mdanderson.org	37	chr22	24095309	24095309	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atggtgacgtgctgggggctGagcgtgcaggagagttgagc	20	6	0	4	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_013378	exon2	c.C126A	p.L42L	GGGGCTGAGCGTG		43	3	0.07	55	0	0				1	0	0				T	24095309	G	T	24095309	2	4	38	1	0	0	0	0	0	0	0	1	17246	1277	45	3		3	VPREB3	22	24095309	Silent	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10		24095309	27209257	79	2660											
SLC5A4	6527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	32628901	32628901	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttacctgtgtacaggatgcGgctgatcatccccggcatca	10	13	2	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_014227	exon9	c.C1006T	p.R336C	GGATGCGGCTGAT		144	51	0.35	159	0	0				0	0					A	32628901	G	A	32628901	3	1	38	1	0	0	0	0	1	0	0	0	14721	1116	39	1	1001	1	SLC5A4	22	32628901	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	8533592	32628901	18675665	80	2661											
ADSL	158	mdanderson.org	37	chr22	40759064	40759064	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acatttctgaaggattggtcGtgtaccccaaagtaagaagc	10	8	1	2	rs370851726		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	ADSL_ENST00000216194,NS,carcinoma,0,2	ADSL_ENST00000216194	NM_001123378	exon10	c.G1090A	p.V364M	TTGGTCGTGTACC		46	3	0.07	63	0	0		0	2	493	0	0				A	40759064	G	A	40759064	3	1	38	1	0	0	0	0	1	0	0	0	345	1145	40	1	1128	1	ADSL	22	40759064	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10	8130163	40759064	10545502	81	2662											
TAB3	257397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	30870899	30870899	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaacagatcacttaccgtaGggatcgcagtggtgcagctg	12	10	1	1	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_152787	exon7	c.C1706T	p.P569L	ACCGTAGGGATCG		60	9	0.15	40	0	0				15	1	0.07				A	30870899	G	A	30870899	3	1	38	1	0	0	0	0	1	0	0	0	15553	1000	35	3	452	3	TAB3	23	30870899	Missense_Mutation	SNP	G	TCGA-2G-AAGT-01A-11D-A42Y-10		30870899	124399661	82	2663											
OPHN1	4983	mdanderson.org	37	chrX	67333029	67333029	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acataaatacttactggcagCagagaccagctctttgtgaa	8	9	1	2	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_002547	exon17	c.G1414A	p.A472T	TGGCAGCAGAGAC		32	3	0.09	26	0	0				2	0	0				T	67333029	C	T	67333029	3	4	38	1	0	0	0	0	1	0	0	0	10922	710	25	2	1026	2	OPHN1	23	67333029	Missense_Mutation	SNP	C	TCGA-2G-AAGT-01A-11D-A42Y-10	36462130	67333029	87937531	83	2664											
KIAA2022	340533	broad.mit.edu	37	chrX	73962573	73962573	+	Frame_Shift_Del	DEL	A	A	-													ttcaaagctttgcttttgggAaaaaggtgtcttgatggagt					novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	KIAA2022	NM_001008537	exon3	c.1819delT	p.S607fs	TTTGGGAAAAAGG		128	7	0.05	87	0	0		262		0	0					-	73962573	A	-	73962573	7	5	38	1	0	1	0	1	0	0	0	0	8310	246	9	0	2739	0	KIAA2022	23	73962573	Frame_Shift_Del	DEL	A	TCGA-2G-AAGT-01A-11D-A42Y-10	6629544	73962573	81307987	84	2665											
ZFY	7544	mdanderson.org	37	chrY	2829598	2829598	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtattggtagcagactgtgCccctgaagcagtcatagatg	12	8	1	3	novel		TCGA-2G-AAGT-01A-11D-A42Y-10	TCGA-2G-AAGT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	980913b0-79a2-4582-993d-61a244cf931f	f4d496a2-1051-4956-a38a-5992eea441c2	.	.	NM_003411	exon3	c.C545T	p.A182V	ACTGTGCCCCTGA		35	3	0.09	37	0	0				9	0	0				T	2829598	C	T	2829598	3	4	38	1	0	0	0	0	1	0	0	0	17719	739	26	2	551	2	ZFY	24	2829598	Missense_Mutation	SNP	C	TCGA-2G-AAGT-01A-11D-A42Y-10		2829598	56543968	85	2666											
PGD	5226	mdanderson.org	37	chr1	10459762	10459762	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatgaccacggctttgtgGtaagcggcgtgggcgcgttg	17	8	0	2	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_002631	exon2	c.84+1G>T	.	TTTGTGGTAAGCG		37	3	0.08	17	0	0				0	0					T	10459762	G	T	10459762	5	4	39	1	0	0	0	0	0	0	1	0	11834	1275	44	3	91	3	PGD	1	10459762	Splice_Site	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10		10459762	238790859	1	2667											
HTR1D	3352	mdanderson.org	37	chr1	23520067	23520067	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggtagatccggccatataGgatgatgagcaacaccgagg	13	10	0	3	rs148842291	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_000864	exon1	c.C646A	p.L216I	CATATAGGATGAT		47	3	0.06	64	0	0				0	0					T	23520067	G	T	23520067	3	4	39	1	0	0	0	0	1	0	0	0	7481	991	35	3	491	3	HTR1D	1	23520067	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	13060305	23520067	225730554	2	2668											
NCDN	23154	mdanderson.org	37	chr1	36026280	36026280	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggcacctcattgctggtggCaccgtgtctgccctatgcca	11	15	2	0	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_014284	exon3	c.C528T	p.G176G	TGGTGGCACCGTG		45	3	0.07	45	0	0				37	0	0				T	36026280	C	T	36026280	2	4	39	1	0	0	0	0	0	0	0	1	10260	697	25	2		2	NCDN	1	36026280	Silent	SNP	C	TCGA-2G-AAGV-01A-11D-A42Y-10	12506213	36026280	213224341	3	2669											
CMPK1	51727	mdanderson.org	37	chr1	47840594	47840594	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tttttagatttgtattgaacGatgtcttgagaggggaaaga	12	2	1	4	rs149887048		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_016308	exon4	c.G485A	p.R162Q	TTGAACGATGTCT		54	3	0.06	60	0	0	0			219	0	0				A	47840594	G	A	47840594	3	1	39	1	0	0	0	0	1	0	0	0	3603	1058	37	1	499	1	CMPK1	1	47840594	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	11814314	47840594	201410027	4	2670											
ABCD3	5825	mdanderson.org	37	chr1	94980702	94980702	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcattttctttgtattagGttggcatcactctcttcact	5	9	5	0	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_002858	exon22	c.G1846T	p.V616F	TATTAGGTTGGCA		40	3	0.08	49	0	0				46	0	0				T	94980702	G	T	94980702	3	4	39	1	0	0	0	0	1	0	0	0	62	1275	44	3	1963	3	ABCD3	1	94980702	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	47140108	94980702	154269919	5	2671											
ETV3	2117	broad.mit.edu	37	chr1	157095428	157095428	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cggccagggattggagagacAgcgaagggactgtgggggtc	20	7	0	1	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	ETV3	NM_001145312	exon5	c.T744C	p.A248A	AGAGACAGCGAAG		148	4	0.03	139	0	0		50		16	0	0				G	157095428	A	G	157095428	2	3	39	1	0	0	0	0	0	0	0	1	5307	175	7	4		4	ETV3	1	157095428	Silent	SNP	A	TCGA-2G-AAGV-01A-11D-A42Y-10	62114726	157095428	92155193	6	2672											
SPTA1	6708	broad.mit.edu	37	chr1	158607904	158607904	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaatttttcgtggtgtgcaGctgccaattcttggacattc	9	9	2	0	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	SPTA1	NM_003126	exon36	c.C5108A	p.A1703D	TGTGCAGCTGCCA		111	5	0.05	92	0	0		720		0	0					T	158607904	G	T	158607904	3	4	39	1	0	0	0	0	1	0	0	0	15171	971	34	2	2219	2	SPTA1	1	158607904	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	1512476	158607904	90642717	7	2673											
VSIG8	391123	mdanderson.org	37	chr1	159824642	159824642	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accggggaggggcccgcttcGcaggcggcggcggcggtgca	21	13	0	0	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_001013661	exon7	c.C1146T	p.C382C	CGCTTCGCAGGCG		16	2	0.13	9	0	0				0	0					A	159824642	G	A	159824642	2	1	39	1	0	0	0	0	0	0	0	1	17285	1079	38	1		1	VSIG8	1	159824642	Silent	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	1216738	159824642	89425979	8	2674											
HEATR5B	54497	broad.mit.edu;mdanderson.org	37	chr2	37234397	37234397	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	aattggggcccaggaattccGatagtgaagtctagctgtat	12	7	1	1	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	HEATR5B	NM_019024	exon29	c.C4573A	p.R1525R	AATTCCGATAGTG		110	5	0.05	113	0	0		185		47	0	0				T	37234397	G	T	37234397	2	4	39	1	0	0	0	0	0	0	0	1	7072	1057	37	1		1	HEATR5B	2	37234397	Silent	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10		37234397	205964976	9	2675											
WBP1	23559	broad.mit.edu	37	chr2	74687702	74687702	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caaggaggtgagggttagtgCcaccctgccagatctggagg	16	9	1	2	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	WBP1	NM_012477	exon4	c.C704T	p.A235V	TTAGTGCCACCCT		137	4	0.03	99	0	0		35		327	0	0				T	74687702	C	T	74687702	3	4	39	1	0	0	0	0	1	0	0	0	17316	739	26	2	718	2	WBP1	2	74687702	Missense_Mutation	SNP	C	TCGA-2G-AAGV-01A-11D-A42Y-10	37453305	74687702	168511671	10	2676											
SMPD4	55627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	130910391	130910391	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccagcccaggttctgtgaGgtggtagcgacagaagctgc	16	10	1	2	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_017951	exon20	c.C2338T	p.L780F	CTGTGAGGTGGTA		73	25	0.34	58	0	0				102	29	0.28				A	130910391	G	A	130910391	3	1	39	1	0	0	0	0	1	0	0	0	14860	1000	35	3	266	3	SMPD4	2	130910391	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	56222689	130910391	112288982	11	2677											
FN1	2335	broad.mit.edu	37	chr2	216288081	216288081	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttcatcttaccagccatgGggcagaacccaaacttctgg	9	13	3	1	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	FN1	NM_212476	exon9	c.C1385A	p.P462H	GCCATGGGGCAGA		163	6	0.04	141	1	0.0070921986		521		638	0	0				T	216288081	G	T	216288081	3	4	39	1	0	0	0	0	1	0	0	0	5994	1232	43	3	6233	3	FN1	2	216288081	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	85377690	216288081	26911292	12	2678											
VGLL4	9686	mdanderson.org	37	chr3	11600098	11600098	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggctggcgggctggccccTgcgagaggcggactcagggc	21	12	1	1	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_001128219	exon5	c.A823G	p.R275G	GGCCCCTGCGAGA		18	2	0.11	16	0	0				89	0	0				C	11600098	T	C	11600098	3	2	39	1	0	0	0	0	1	0	0	0	17220	1579	55	4	71	4	VGLL4	3	11600098	Missense_Mutation	SNP	T	TCGA-2G-AAGV-01A-11D-A42Y-10		11600098	186422332	13	2679											
SCAP	22937	mdanderson.org	37	chr3	47462212	47462212	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttggctgtcccactggcttGgctgagggcaggcaggcctc	16	12	0	1	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_012235	exon12	c.C1395A	p.A465A	TGGCTTGGCTGAG		41	3	0.07	29	1	0.0344827586				107	0	0				T	47462212	G	T	47462212	2	4	39	1	0	0	0	0	0	0	0	1	13929	1335	47	3		3	SCAP	3	47462212	Silent	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	35862114	47462212	150560218	14	2680											
MUC4	4585	bcgsc.ca	37	chr3	195513145	195513145	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtggcgtgagctgtggatActgaggaagtgtcggtgaca	19	5	0	3	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	MUC4	NM_018406	exon2	c.T5306C	p.V1769A	GTGGATACTGAGG		728	55	0.08	646	11	0.0170278638		1505		2	0	0				G	195513145	A	G	195513145	3	3	39	1	0	0	0	0	1	0	0	0	10025	391	14	4		4	MUC4	3	195513145	Missense_Mutation	SNP	A	TCGA-2G-AAGV-01A-11D-A42Y-10	148050933	195513145	2509285	15	2681											
SPON2	10417	mdanderson.org	37	chr4	1164277	1164277	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggctctgtcgcagccgcaCcagtgtcaccctggcgatgg	15	14	2	0	rs2279279	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_001199021	exon7	c.G724A	p.V242M	GCCGCACCAGTGT		61	2	0.03	64	0	0				31	0	0				T	1164277	C	T	1164277	3	4	39	1	0	0	0	0	1	0	0	0	15138	507	18	3	279	3	SPON2	4	1164277	Missense_Mutation	SNP	C	TCGA-2G-AAGV-01A-11D-A42Y-10		1164277	189989999	16	2682											
CSN2	1447	broad.mit.edu	37	chr4	70823294	70823294	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggatttgagggtcaaaaaAgggtatcgttggagatttaa	14	2	1	2	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	CSN2	NM_001891	exon5	c.T373C	p.F125L	CAAAAAAGGGTAT		111	4	0.04	153	0	0		30		0	0					G	70823294	A	G	70823294	3	3	39	1	0	0	0	0	1	0	0	0	3973	72	3	4	315	4	CSN2	4	70823294	Missense_Mutation	SNP	A	TCGA-2G-AAGV-01A-11D-A42Y-10	69659017	70823294	120330982	17	2683											
HPSE	10855	mdanderson.org	37	chr4	84234379	84234379	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcttaataacgcatttagGccaaagatcaagtccagtcc	7	10	2	1	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_001098540	exon4	c.C561A	p.G187G	ATTTAGGCCAAAG		92	5	0.05	151	0	0				1	0	0				T	84234379	G	T	84234379	2	4	39	1	0	0	0	0	0	0	0	1	7384	1190	42	2		2	HPSE	4	84234379	Silent	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	13411085	84234379	106919897	18	2684											
DSPP	1834	bcgsc.ca	37	chr4	88536686	88536686	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaatagtagtgacagcagcAatagcagtgacagcagcaac	11	8	0	2	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	DSPP	NM_014208	exon5	c.A2872G	p.N958D	AGCAGCAATAGCA		63	6	0.1	112	1	0.0089285714		174		0	0					G	88536686	A	G	88536686	3	3	39	1	0	0	0	0	1	0	0	0	4808	130	5	4	2886	4	DSPP	4	88536686	Missense_Mutation	SNP	A	TCGA-2G-AAGV-01A-11D-A42Y-10	4302307	88536686	102617590	19	2685											
SGTB	54557	mdanderson.org	37	chr5	64966159	64966159	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagttcaggattttgttgctGtatctgctgagcaaactgct	10	7	2	1	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_019072	exon11	c.C829T	p.Q277X	GTTGCTGTATCTG		41	3	0.07	65	0	0				4	0	0				A	64966159	G	A	64966159	4	1	39	1	0	0	0	0	0	1	0	0	14279	1386	48	3	89	3	SGTB	5	64966159	Nonsense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10		64966159	115949101	20	2686											
GCNT4	51301	mdanderson.org	37	chr5	74324717	74324717	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcgaaggtgagatccagtAcaactgggatagaaaaagcc	11	8	0	2	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_016591	exon1	c.T1146C	p.C382C	TCCAGTACAACTG		47	3	0.06	57	0	0				2	0	0				G	74324717	A	G	74324717	2	3	39	1	0	0	0	0	0	0	0	1	6342	389	14	4		4	GCNT4	5	74324717	Silent	SNP	A	TCGA-2G-AAGV-01A-11D-A42Y-10	9358558	74324717	106590543	21	2687											
HLA-G	3135	ucsc.edu	37	chr6	29797394	29797394	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtgggcagctgtggtggtGccttctggagaggagcagag	19	6	1	2	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	HLA-G	NM_002127	exon5	c.G819A	p.V273V	GGTGGTGCCTTCT		106	1	0.01	111	0	0		90		181	66	0.36				A	29797394	G	A	29797394	2	1	39	1	0	0	0	0	0	0	0	1	7252	1306	46	2		2	HLA-G	6	29797394	Silent	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10		29797394	141317673	22	2688											
SUPT3H	8464	broad.mit.edu	37	chr6	45073703	45073703	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacatcttctaccaaaactgCtgtttcatgaagaggccttc	6	12	3	2	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	SUPT3H	NM_181356	exon5	c.G175A	p.A59T	AAACTGCTGTTTC		101	4	0.04	94	0	0		75		12	0	0				T	45073703	C	T	45073703	3	4	39	1	0	0	0	0	1	0	0	0	15452	797	28	2	847	2	SUPT3H	6	45073703	Missense_Mutation	SNP	C	TCGA-2G-AAGV-01A-11D-A42Y-10	15276309	45073703	126041364	23	2689											
SYNJ2	8871	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	158517208	158517208	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cttggctttctaagagctcaGaccctttggactcaggaacc	9	12	3	2	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	SYNJ2	NM_003898	exon27	c.G4303A	p.D1435N	AGCTCAGACCCTT		181	17	0.09	159	1	0.0062893082		111		29	2	0.07				A	158517208	G	A	158517208	3	1	39	1	0	0	0	0	1	0	0	0	15509	942	33	3	4409	3	SYNJ2	6	158517208	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	113443505	158517208	12597859	24	2690											
SDK1	221935	mdanderson.org	37	chr7	4188935	4188935	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agctcctggtgccccaggcaGaagtgaccgcacgcagcctc	12	16	0	2	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	SDK1,NS,carcinoma,0,1	SDK1	NM_152744	exon30	c.G4465T	p.E1489X	CAGGCAGAAGTGA		81	5	0.06	50	0	0		0	1	11	0	0				T	4188935	G	T	4188935	4	4	39	1	0	0	0	0	0	1	0	0	14021	943	33	3	4583	3	SDK1	7	4188935	Nonsense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10		4188935	154949728	25	2691											
TARP	0	broad.mit.edu	37	chr7	38304986	38304986	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagataatttcttgatcaaCtccgtttttattattctcat	3	7	3	2	rs17418300	by1000genomes	TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_001003806	exon2	c.G109A	p.V37I	GATCAACTCCGTT		136	5	0.04	100	2	0.02				0	0					T	38304986	C	T	38304986	1	4	39	0	1	0	0	0	0	0	0	0	15614	565	20	3		3	TARP	7	38304986	RNA	SNP	C	TCGA-2G-AAGV-01A-11D-A42Y-10	34116051	38304986	120833677	26	2692											
TAF6	6878	mdanderson.org	37	chr7	99705016	99705016	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gacggggacgatgccgggggAggaactggagaaggatggga	22	5	0	1	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_001190415	exon15	c.T1998C	p.P666P	CGGGGGAGGAACT		54	3	0.06	42	1	0.0238095238				269	1	0				G	99705016	A	G	99705016	2	3	39	1	0	0	0	0	0	0	0	1	15586	291	11	4		4	TAF6	7	99705016	Silent	SNP	A	TCGA-2G-AAGV-01A-11D-A42Y-10	61400030	99705016	59433647	27	2693											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	3216723	3216723	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acacggcggcccccacccagGcaggtaagcttggtggcacc	13	16	0	0	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_033225	exon21	c.C3255T	p.C1085C	ACCCAGGCAGGTA		102	30	0.29	94	0	0				1	0	0				A	3216723	G	A	3216723	2	1	39	1	0	0	0	0	0	0	0	1	3969	1195	42	2		2	CSMD1	8	3216723	Silent	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10		3216723	143147299	28	2694											
CPSF1	29894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	145627045	145627045	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccaccacactcacctgtgCtcctgtcattcttggtcaga	6	17	4	1	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_013291	exon3	c.G167A	p.S56N	CCTGTGCTCCTGT		177	40	0.23	103	0	0				92	20	0.22				T	145627045	C	T	145627045	3	4	39	1	0	0	0	0	1	0	0	0	3847	797	28	2	4308	2	CPSF1	8	145627045	Missense_Mutation	SNP	C	TCGA-2G-AAGV-01A-11D-A42Y-10	142410322	145627045	736977	29	2695											
PTPRD	5789	mdanderson.org	37	chr9	8376061	8376061	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caggcggtgaactggaattgTctcacttctctcttctcact	8	12	4	1	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_002839	exon39	c.A4536G	p.R1512R	GAATTGTCTCACT		41	3	0.07	76	0	0				0	0					C	8376061	T	C	8376061	2	2	39	1	0	0	0	0	0	0	0	1	12850	1664	58	4		4	PTPRD	9	8376061	Silent	SNP	T	TCGA-2G-AAGV-01A-11D-A42Y-10		8376061	132837370	30	2696											
SPTAN1	6709	mdanderson.org	37	chr9	131343287	131343287	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcagtgcatggacctgcaGctcttctaccgggacactga	12	12	2	1	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_003127	exon11	c.G1410T	p.Q470H	CCTGCAGCTCTTC		51	3	0.06	64	0	0				60	0	0				T	131343287	G	T	131343287	3	4	39	1	0	0	0	0	1	0	0	0	15172	962	34	2	1448	2	SPTAN1	9	131343287	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	122967226	131343287	9870144	31	2697											
MPP7	143098	bcgsc.ca	37	chr10	28438946	28438946	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccgcaccatggagaatggGcaccggactctgcttctcat	11	14	2	1	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	MPP7	NM_173496	exon6	c.C199A	p.P67T	GAATGGGCACCGG		23	4	0.17	49	0	0		60		7	0	0				T	28438946	G	T	28438946	3	4	39	1	0	0	0	0	1	0	0	0	9787	1203	42	2	1587	2	MPP7	10	28438946	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10		28438946	107095801	32	2698											
EPC1	80314	mdanderson.org	37	chr10	32576132	32576132	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgttggggagtagcagcgGcagacgatggtaagactttg	16	6	1	2	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_001272004	exon7	c.C1046T	p.A349V	GCAGCGGCAGACG		39	3	0.08	56	0	0				40	0	0				A	32576132	G	A	32576132	3	1	39	1	0	0	0	0	1	0	0	0	5188	1203	42	2	1500	2	EPC1	10	32576132	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	4137186	32576132	102958615	33	2699											
ZMIZ1	57178	mdanderson.org	37	chr10	81067288	81067288	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacatgcccaacaacatggCcgccctcgagaaacccctca	8	17	1	1	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_020338	exon23	c.C2795T	p.A932V	ACATGGCCGCCCT		49	3	0.06	58	0	0				61	0	0				T	81067288	C	T	81067288	3	4	39	1	0	0	0	0	1	0	0	0	17753	739	26	2	2869	2	ZMIZ1	10	81067288	Missense_Mutation	SNP	C	TCGA-2G-AAGV-01A-11D-A42Y-10	48491156	81067288	54467459	34	2700											
SLIT1	6585	broad.mit.edu	37	chr10	98781011	98781011	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctcctaggctcaccttgGcattcaaacttcttggcagg	10	12	3	0	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	SLIT1	NM_003061	exon26	c.C2742A	p.C914X	ACCTTGGCATTCA		122	4	0.03	164	0	0		154		0	0					T	98781011	G	T	98781011	4	4	39	1	0	0	0	0	0	1	0	0	14792	1195	42	2	1910	2	SLIT1	10	98781011	Nonsense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	17713723	98781011	36753736	35	2701											
PSD	5662	mdanderson.org	37	chr10	104171931	104171931	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggtccagagtcatgcccGtgaagacaaagaacttgagg	12	9	1	5	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	PSD_ENST00000020673,NS,carcinoma,+1,2	PSD_ENST00000020673	NM_001270965	exon8	c.C1802A	p.T601K	ATGCCCGTGAAGA		54	3	0.06	98	0	0		1	2	0	0					T	104171931	G	T	104171931	3	4	39	1	0	0	0	0	1	0	0	0	12694	1145	40	1	1316	1	PSD	10	104171931	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	5390920	104171931	31362816	36	2702											
TUB	7275	mdanderson.org	37	chr11	8118340	8118340	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccagctctgctactagcaGgaagtccgtcagggtgagtg	13	12	2	1	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_003320	exon7	c.G839T	p.R280M	CTAGCAGGAAGTC		38	3	0.08	43	0	0				13	0	0				T	8118340	G	T	8118340	3	4	39	1	0	0	0	0	1	0	0	0	16803	1000	35	3	907	3	TUB	11	8118340	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10		8118340	126888176	37	2703											
MS4A15	219995	mdanderson.org	37	chr11	60531240	60531240	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgccagcaatggagtgtttGttgtcatcccgccaaacaac	9	13	1	0	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_001098835	exon2	c.G34T	p.V12F	GTGTTTGTTGTCA		47	3	0.06	63	0	0				0	0					T	60531240	G	T	60531240	3	4	39	1	0	0	0	0	1	0	0	0	9907	1377	48	3	36	3	MS4A15	11	60531240	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	52412900	60531240	74475276	38	2704											
C1R	715	broad.mit.edu	37	chr12	7188347	7188347	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacgctgaccctgcggatgGggtgatttcctagcttcatg	14	10	1	2	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	C1R	.	.	.	.	CGGATGGGGTGAT		204	6	0.03	92	0	0		49		2165	1	0				T	7188347	G	T	7188347	3	4	39	1	0	0	0	0	1	0	0	0	1985	1232	43	3	514	3	C1R	12	7188347	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10		7188347	126663548	39	2705											
PPHLN1	51535	mdanderson.org	37	chr12	42729726	42729726	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtggtctgagggacgatatGaatatgaaagaattccgaga	13	4	1	5	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_201440	exon3	c.G43T	p.E15X	CGATATGAATATG		47	3	0.06	70	0	0				50	0	0				T	42729726	G	T	42729726	4	4	39	1	0	0	0	0	0	1	0	0	12359	1291	45	3	49	3	PPHLN1	12	42729726	Nonsense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	35541379	42729726	91122169	40	2706											
STAC3	246329	broad.mit.edu	37	chr12	57642942	57642942	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggggtggctcctcctcctcCtcttcttcctcttcctcttc	7	18	4	0	rs143709026		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	STAC3,caecum,carcinoma,0,1	STAC3	NM_145064	exon3	c.G216A	p.E72E	CTCCTCCTCTTCT		45	3	0.07	48	0	0		32	1	2	0	0				T	57642942	C	T	57642942	2	4	39	1	0	0	0	0	0	0	0	1	15296	680	24	3		3	STAC3	12	57642942	Silent	SNP	C	TCGA-2G-AAGV-01A-11D-A42Y-10	14913216	57642942	76208953	41	2707											
NAV3	89795	broad.mit.edu	37	chr12	78574724	78574724	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taacacagctaagcctactcGgccaccgtcagaatcctcaa	6	15	2	1	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	NAV3,caecum,carcinoma,+1,1	NAV3	NM_014903	exon29	c.G5525T	p.R1842L	CTACTCGGCCACC		174	5	0.03	167	0	0		506	1	10	0	0				T	78574724	G	T	78574724	3	4	39	1	0	0	0	0	1	0	0	0	10232	1116	39	1	5639	1	NAV3	12	78574724	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	20931782	78574724	55277171	42	2708											
KDM2B	84678	mdanderson.org	37	chr12	121878619	121878619	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccccagcctggcaactcacCtggcctgttgtctgtgggcg	12	16	2	0	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_032590	exon21	c.G3610A	p.G1204S	ACTCACCTGGCCT		55	3	0.05	47	0	0				49	0	0				T	121878619	C	T	121878619	3	4	39	1	0	0	0	0	1	0	0	0	8168	695	24	3	464	3	KDM2B	12	121878619	Missense_Mutation	SNP	C	TCGA-2G-AAGV-01A-11D-A42Y-10	43303895	121878619	11973276	43	2709											
BRI3BP	140707	broad.mit.edu	37	chr12	125478382	125478384	+	In_Frame_Del	DEL	CTG	CTG	-													ccctggcccgggccgggctcCtgctgctgctgctgctgctg					rs374894130		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	CTG	CTG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	BRI3BP	NM_080626	exon1	c.46_48del	p.16_16del	GGGCTCCTGCTGC		6	2	0.33	14	0	0		18		0	0					-	125478384	CTG	-	125478382	7	5	39	1	0	1	0	1	0	0	0	0	1515	680	24	0	48	0	BRI3BP	12	125478382	In_Frame_Del	DEL	CTG	TCGA-2G-AAGV-01A-11D-A42Y-10	3599763	125478382	8373513	44	2710											
IPO5	3843	bcgsc.ca;mdanderson.org	37	chr13	98634777	98634777	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaacctatgagaatatcccAggccagtcaaagatcacatt	7	10	2	2	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	IPO5	NM_002271	exon5	c.A165G	p.P55P	TATCCCAGGCCAG		61	5	0.08	79	0	0		90		47	0	0				G	98634777	A	G	98634777	2	3	39	1	0	0	0	0	0	0	0	1	7839	175	7	4		4	IPO5	13	98634777	Silent	SNP	A	TCGA-2G-AAGV-01A-11D-A42Y-10		98634777	16535101	45	2711											
PNN	5411	mdanderson.org	37	chr14	39644508	39644508	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggtcgccgtgagaactttgCaggaacagctggaaaaggcc	14	10	0	1	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_002687	exon1	c.C25T	p.Q9X	ACTTTGCAGGAAC		52	3	0.06	67	0	0				61	0	0				T	39644508	C	T	39644508	4	4	39	1	0	0	0	0	0	1	0	0	12207	711	25	2	27	2	PNN	14	39644508	Nonsense_Mutation	SNP	C	TCGA-2G-AAGV-01A-11D-A42Y-10		39644508	67705032	46	2712											
DCAF5	8816	mdanderson.org	37	chr14	69521081	69521081	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgagcttcttggtttcaaaAgggtgctctacagagccgct	11	9	3	2	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	DCAF5,bladder,carcinoma,-1,1	DCAF5	NM_003861	exon9	c.T2322C	p.P774P	TTCAAAAGGGTGC		47	3	0.06	45	0	0		-1	1	76	0	0				G	69521081	A	G	69521081	2	3	39	1	0	0	0	0	0	0	0	1	4297	59	3	4		4	DCAF5	14	69521081	Silent	SNP	A	TCGA-2G-AAGV-01A-11D-A42Y-10	29876573	69521081	37828459	47	2713											
ACOT2	10965	broad.mit.edu	37	chr14	74041690	74041690	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatggcctctttcctgaagGgcatcacggctgctgtcgtc	11	14	2	1	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	ACOT2	NM_006821	exon3	c.G925T	p.G309C	CTGAAGGGCATCA		324	4	0.01	350	1	0.0028571429		24		155	0	0				T	74041690	G	T	74041690	3	4	39	1	0	0	0	0	1	0	0	0	152	1232	43	3	935	3	ACOT2	14	74041690	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	4520609	74041690	33307850	48	2714											
EIF2AK4	440275	mdanderson.org	37	chr15	40268993	40268993	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccggcccgggctccagcgatGacgaggacgacgacgaggac	16	14	0	1	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_001013703	exon12	c.G2197T	p.D733Y	AGCGATGACGAGG		35	3	0.09	30	0	0				21	0	0				T	40268993	G	T	40268993	3	4	39	1	0	0	0	0	1	0	0	0	5025	1290	45	3	2243	3	EIF2AK4	15	40268993	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10		40268993	62262399	49	2715											
CSK	1445	mdanderson.org	37	chr15	75091663	75091663	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgagcggcttctgtaccCgccggagacaggcctgttcc	14	14	1	2	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_004383	exon5	c.C293T	p.P98L	TGTACCCGCCGGA		42	3	0.07	46	0	0				132	0	0				T	75091663	C	T	75091663	3	4	39	1	0	0	0	0	1	0	0	0	3968	652	23	1	307	1	CSK	15	75091663	Missense_Mutation	SNP	C	TCGA-2G-AAGV-01A-11D-A42Y-10	34822670	75091663	27439729	50	2716											
POLG	5428	mdanderson.org	37	chr15	89876861	89876861	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgctgctgctgctgctgcCgccgccgctgcccgtcgctg	14	18	0	0	rs74382477	bycluster	TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_001126131	exon2	c.G125A	p.R42Q	TGCTGCCGCCGCC		19	5	0.26	17	0	0				13	0	0				T	89876861	C	T	89876861	3	4	39	1	0	0	0	0	1	0	0	0	12247	652	23	1	3682	1	POLG	15	89876861	Missense_Mutation	SNP	C	TCGA-2G-AAGV-01A-11D-A42Y-10	14785198	89876861	12654531	51	2717											
ADAMTS17	170691	broad.mit.edu;mdanderson.org	37	chr15	100882053	100882053	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cgggtccagtccccaaaccaGcagcagcagcacgggcagga	13	15	0	0	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	ADAMTS17	NM_139057	exon1	c.C52G	p.L18V	AAACCAGCAGCAG		48	3	0.06	47	0	0		127		5	0	0				C	100882053	G	C	100882053	3	2	39	1	0	0	0	0	1	0	0	0	261	962	34	5	3323	5	ADAMTS17	15	100882053	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	11005192	100882053	1649339	52	2718											
TMEM8A	58986	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	422631	422631	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacatggaggccatgatcaCgaaggcaaagaggcagggcc	14	11	1	2	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	TMEM8A	NM_021259	exon12	c.G1999A	p.V667M	TGATCACGAAGGC		20	4	0.2	37	0	0		49		70	27	0.39				T	422631	C	T	422631	3	4	39	1	0	0	0	0	1	0	0	0	16273	536	19	1	324	1	TMEM8A	16	422631	Missense_Mutation	SNP	C	TCGA-2G-AAGV-01A-11D-A42Y-10		422631	89932122	53	2719											
THAP11	57215	mdanderson.org	37	chr16	67876485	67876485	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttacgtgctgcgtgccaGgctgctacaacaactcgcac	10	14	0	0	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_020457	exon1	c.G28T	p.G10C	GTGCCAGGCTGCT		44	3	0.07	43	0	0				25	0	0				T	67876485	G	T	67876485	3	4	39	1	0	0	0	0	1	0	0	0	15902	1000	35	3	30	3	THAP11	16	67876485	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	67453854	67876485	22478268	54	2720											
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	3937397	3937397	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtcccctgcagcaaacaGgttgtgtttggctgagagga	13	9	0	1	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_015113	exon40	c.C6496A	p.L2166M	CAAACAGGTTGTG		150	15	0.1	124	0	0				24	3	0.13				T	3937397	G	T	3937397	3	4	39	1	0	0	0	0	1	0	0	0	18294	991	35	3	2453	3	ZZEF1	17	3937397	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10		3937397	77257813	55	2721											
DHRS7C	201140	broad.mit.edu;mdanderson.org	37	chr17	9674864	9674864	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggccaccacggcgaaaaAgaactccgggaagaaggtgc	13	11	0	2	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	DHRS7C	NM_001220493	exon6	c.T880C	p.F294L	CGAAAAAGAACTC		80	4	0.05	54	0	0		34		1	0	0				G	9674864	A	G	9674864	3	3	39	1	0	0	0	0	1	0	0	0	4525	72	3	4	62	4	DHRS7C	17	9674864	Missense_Mutation	SNP	A	TCGA-2G-AAGV-01A-11D-A42Y-10	5737467	9674864	71520346	56	2722											
ARMC7	79637	mdanderson.org	37	chr17	73106427	73106427	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cccccacgtcgggcggctggGatacctgcaggcgctggtca	15	15	1	0	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_024585	exon1	c.G44T	p.G15V	GGCTGGGATACCT		65	4	0.06	66	0	0				9	0	0				T	73106427	G	T	73106427	3	4	39	1	0	0	0	0	1	0	0	0	955	1174	41	3	46	3	ARMC7	17	73106427	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	63431563	73106427	8088783	57	2723											
TBCD	6904	mdanderson.org	37	chr17	80887305	80887305	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgcatcacccagctccttGggctgcccacctaccgctac	7	20	1	0	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_005993	exon32	c.G2920T	p.G974W	CTCCTTGGGCTGC		47	3	0.06	55	0	0				179	0	0				T	80887305	G	T	80887305	3	4	39	1	0	0	0	0	1	0	0	0	15692	1348	47	3	3046	3	TBCD	17	80887305	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	7780878	80887305	307905	58	2724											
MEX3C	51320	mdanderson.org	37	chr18	48703101	48703101	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agatggctgacttcctctgcGctgagtcttcatgttaccag	10	11	3	3	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_016626	exon2	c.C1600A	p.R534S	CTCTGCGCTGAGT		61	4	0.07	99	0	0				22	0	0				T	48703101	G	T	48703101	3	4	39	1	0	0	0	0	1	0	0	0	9560	1087	38	1	383	1	MEX3C	18	48703101	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10		48703101	29374147	59	2725											
C19orf26	255057	mdanderson.org	37	chr19	1236073	1236073	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggtggtggtggtggcggcTgtggccatggtggctgtggg	24	5	0	0	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_152769	exon2	c.A27G	p.T9T	GGCGGCTGTGGCC		15	2	0.13	14	0	0				1	0	0				C	1236073	T	C	1236073	2	2	39	1	0	0	0	0	0	0	0	1	1928	1567	55	4		4	C19orf26	19	1236073	Silent	SNP	T	TCGA-2G-AAGV-01A-11D-A42Y-10		1236073	57892910	60	2726											
PDE4A	5141	mdanderson.org	37	chr19	10563985	10563985	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agacctgctctaagccttggCtggtgggctggtgggaccag	16	10	1	1	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_006202	exon1	c.C46T	p.L16L	CCTTGGCTGGTGG		48	3	0.06	31	0	0				0	0					T	10563985	C	T	10563985	2	4	39	1	0	0	0	0	0	0	0	1	11685	796	28	2		2	PDE4A	19	10563985	Silent	SNP	C	TCGA-2G-AAGV-01A-11D-A42Y-10	9327912	10563985	48564998	61	2727											
ISYNA1	51477	mdanderson.org	37	chr19	18548463	18548463	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcgattggccagcaccgcGgcggtgagtgtggagccgtt	17	10	0	1	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_016368	exon3	c.C228A	p.A76A	CACCGCGGCGGTG		15	2	0.13	14	0	0				72	0	0				T	18548463	G	T	18548463	2	4	39	1	0	0	0	0	0	0	0	1	7910	1103	39	1		1	ISYNA1	19	18548463	Silent	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	7984478	18548463	40580520	62	2728											
CILP2	148113	broad.mit.edu	37	chr19	19656233	19656233	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgctcccacaacgcaggggGcagccacccacgcacccgcg	11	21	0	0	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	CILP2,NS,neuroblastoma,-1,1	CILP2	NM_153221	exon8	c.G2879A	p.G960D	CAGGGGGCAGCCA		57	3	0.05	48	0	0		84	1	8	0	0				A	19656233	G	A	19656233	3	1	39	1	0	0	0	0	1	0	0	0	3452	1203	42	2	2909	2	CILP2	19	19656233	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	1107770	19656233	39472750	63	2729											
HPN	3249	mdanderson.org	37	chr19	35551260	35551260	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcccacagactgtggccGcaggaagctgcccgtggacc	13	14	0	1	rs145117053	bycluster;by1000genomes	TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_182983	exon8	c.G464A	p.R155H	GTGGCCGCAGGAA		32	3	0.09	38	0	0	0			2	0	0				A	35551260	G	A	35551260	3	1	39	1	0	0	0	0	1	0	0	0	7376	1087	38	1	490	1	HPN	19	35551260	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	15895027	35551260	23577723	64	2730											
MLL4	0	broad.mit.edu	37	chr19	36223857	36223857	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggccctagagaggagtcacTccccccggcgcctcccctgg	12	18	1	1	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	MLL4	NM_014727	exon28	c.T6407C	p.L2136P	AGTCACTCCCCCC		216	6	0.03	189	1	0.0052910053		229		17	0	0				C	36223857	T	C	36223857	3	2	39	1	0	0	0	0	1	0	0	0	9670	1551	54	4	6517	4	MLL4	19	36223857	Missense_Mutation	SNP	T	TCGA-2G-AAGV-01A-11D-A42Y-10	672597	36223857	22905126	65	2731											
TBC1D20	128637	broad.mit.edu	37	chr20	425725	425725	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cgccgcaatgaccgccggacGtccagcaacacttgttggta	11	14	0	1	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	TBC1D20	NM_144628	exon3	c.C306G	p.D102E	CCGGACGTCCAGC		140	3	0.02	145	0	0		34		40	2	0.05	rescued with RNA-seq			C	425725	G	C	425725	3	2	39	1	0	0	0	0	1	0	0	0	15665	1136	40	5	929	5	TBC1D20	20	425725	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10		425725	62599795	66	2732											
DIDO1	11083	mdanderson.org	37	chr20	61513425	61513425	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaagctgccgtggaggctgCcgctgctgttgtggctgctg	18	10	0	0	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_033081	exon16	c.G3883A	p.A1295T	AGGCTGCCGCTGC		51	3	0.06	52	0	0				10	0	0				T	61513425	C	T	61513425	3	4	39	1	0	0	0	0	1	0	0	0	4550	739	26	2	2843	2	DIDO1	20	61513425	Missense_Mutation	SNP	C	TCGA-2G-AAGV-01A-11D-A42Y-10	61087700	61513425	1512095	67	2733											
GMEB2	26205	mdanderson.org	37	chr20	62221508	62221508	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gccgtgtgctcctcaggcccGggggcagcccctgcgggcac	16	17	1	0	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_012384	exon10	c.C1527G	p.P509P	AGGCCCGGGGGCA		52	3	0.06	31	0	0				19	0	0				C	62221508	G	C	62221508	2	2	39	1	0	0	0	0	0	0	0	1	6529	1103	39	5		5	GMEB2	20	62221508	Silent	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10	708083	62221508	804012	68	2734											
PLXNB2	23654	mdanderson.org	37	chr22	50722032	50722032	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accagggccgtccactcaccGggtggacacggagtaacgtt	13	13	1	0	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	.	NM_012401	exon15	c.C2569T	p.R857W	CTCACCGGGTGGA		38	3	0.08	51	0	0				258	0	0				A	50722032	G	A	50722032	3	1	39	1	0	0	0	0	1	0	0	0	12171	1130	39	1	3039	1	PLXNB2	22	50722032	Missense_Mutation	SNP	G	TCGA-2G-AAGV-01A-11D-A42Y-10		50722032	582534	69	2735											
UPRT	139596	broad.mit.edu	37	chrX	74519638	74519638	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggaaagatcctgattcagAgtgatgaggagacacaaaga	12	5	1	7	novel		TCGA-2G-AAGV-01A-11D-A42Y-10	TCGA-2G-AAGV-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c5576078-ba13-4487-8b25-2dfdb8370330	b92907a1-a37f-4fd8-990c-e8c356ea936f	.	UPRT	NM_145052	exon5	c.A631G	p.S211G	ATTCAGAGTGATG		85	3	0.04	74	0	0		46		9	0	0				G	74519638	A	G	74519638	3	3	39	1	0	0	0	0	1	0	0	0	17073	304	11	4	649	4	UPRT	23	74519638	Missense_Mutation	SNP	A	TCGA-2G-AAGV-01A-11D-A42Y-10		74519638	80750922	70	2736											
TAS1R3	83756	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	1267021	1267023	+	In_Frame_Del	DEL	CTC	CTC	-													gttctgtgtggccccaggttCtcctcaaacggcctgctctg					novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	CTC	CTC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	TAS1R3	NM_152228	exon2	c.194_196del	p.65_66del	CAGGTTCTCCTCA		28	12	0.43	54	0	0		39		3	0	0				-	1267023	CTC	-	1267021	7	5	40	1	0	1	0	1	0	0	0	0	15620	912	32	0	201	0	TAS1R3	1	1267021	In_Frame_Del	DEL	CTC	TCGA-2G-AAGW-01A-11D-A42Y-10		1267021	247983600	1	2737											
GABRD	2563	broad.mit.edu	37	chr1	1961133	1961133	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggtggagtacgcctttGctcatttcaacgccgactac	9	14	2	0	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	GABRD	NM_000815	exon8	c.G991T	p.A331S	GCCTTTGCTCATT		105	3	0.03	195	0	0		49		6	0	0				T	1961133	G	T	1961133	3	4	40	1	0	0	0	0	1	0	0	0	6203	1319	46	2	1021	2	GABRD	1	1961133	Missense_Mutation	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10	694112	1961133	247289488	2	2738											
AGTRAP	57085	mdanderson.org	37	chr1	11807591	11807591	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagcgggactccatcgacGccataagcatggtgagccag	12	13	1	1	rs201093684	by1000genomes	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_001040196	exon4	c.G254T	p.R85L	ATCGACGCCATAA		40	3	0.08	91	0	0	0			244	0	0				T	11807591	G	T	11807591	3	4	40	1	0	0	0	0	1	0	0	0	400	1087	38	1	268	1	AGTRAP	1	11807591	Missense_Mutation	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10	9846458	11807591	237443030	3	2739											
LDLRAD2	401944	mdanderson.org	37	chr1	22142477	22142477	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgccagaatggcaggtgcAtcccctcaagcctcgtgtgt	12	13	1	1	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_001013693	exon3	c.A553G	p.I185V	AGGTGCATCCCCT		43	3	0.07	82	0	0				1	0	0				G	22142477	A	G	22142477	3	3	40	1	0	0	0	0	1	0	0	0	8744	217	8	4	563	4	LDLRAD2	1	22142477	Missense_Mutation	SNP	A	TCGA-2G-AAGW-01A-11D-A42Y-10	10334886	22142477	227108144	4	2740											
OVGP1	5016	bcgsc.ca	37	chr1	111957533	111957533	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgactcacaggggtcacagaCtgatgacccacaggggtcag	13	11	3	4	rs112145355	bycluster	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	OVGP1	NM_002557	exon11	c.G1590A	p.Q530Q	CACAGACTGATGA		101	3	0.03	156	0	0		177		11	0	0				T	111957533	C	T	111957533	2	4	40	1	0	0	0	0	0	0	0	1	11371	564	20	3		3	OVGP1	1	111957533	Silent	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10	89815056	111957533	137293088	5	2741											
F5	2153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	169483622	169483622	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatgttttaggaatgacacGgataaacctggaaatgattg	10	6	0	2	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	F5,colon,carcinoma,+1,1	F5	NM_000130	exon25	c.C6604T	p.R2202C	TGACACGGATAAA		124	7	0.06	124	0	0		1	1	0	0					A	169483622	G	A	169483622	3	1	40	1	0	0	0	0	1	0	0	0	5376	1116	39	1	74	1	F5	1	169483622	Missense_Mutation	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10	57526089	169483622	79766999	6	2742											
GPR52	9293	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	174417851	174417851	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgtcttggctcaccagtgCctattttactggctttattg	8	11	2	0	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	GPR52	NM_005684	exon1	c.C602T	p.A201V	CCAGTGCCTATTT		136	65	0.48	139	1	0.0071942446		40		0	0					T	174417851	C	T	174417851	3	4	40	1	0	0	0	0	1	0	0	0	6737	739	26	2	604	2	GPR52	1	174417851	Missense_Mutation	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10	4934229	174417851	74832770	7	2743											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	21239410	21239410	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cagtagattcatcattaactCtgaggattgttccgaggtca	9	8	4	2	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_000384	exon21	c.G3233C	p.R1078T	TTAACTCTGAGGA		162	23	0.14	235	0	0				0	0					G	21239410	C	G	21239410	3	3	40	1	0	0	0	0	1	0	0	0	782	913	32	5	10494	5	APOB	2	21239410	Missense_Mutation	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10		21239410	221959963	8	2744											
ZNF513	130557	mdanderson.org	37	chr2	27601026	27601026	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctctcctcgcatgcagcGcccacacatggcagctccca	8	19	1	0	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_144631	exon4	c.C1012A	p.R338S	TGCAGCGCCCACA		43	3	0.07	32	0	0				88	0	0				T	27601026	G	T	27601026	3	4	40	1	0	0	0	0	1	0	0	0	18014	1087	38	1	617	1	ZNF513	2	27601026	Missense_Mutation	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10	6361616	27601026	215598347	9	2745											
SPDYA	245711	broad.mit.edu	37	chr2	29063247	29063247	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttatccagtcatacagcaggGgtgacagaaaaacattctca	8	9	2	2	rs142885879	alternate_allele	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	SPDYA	NM_001142634	exon6	c.G762T	p.G254G	AGCAGGGGTGACA		268	5	0.02	289	0	0		41		0	0					T	29063247	G	T	29063247	2	4	40	1	0	0	0	0	0	0	0	1	15082	1219	43	3		3	SPDYA	2	29063247	Silent	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10	1462221	29063247	214136126	10	2746											
CAPN13	92291	ucsc.edu;bcgsc.ca	37	chr2	30955408	30955408	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagatgcagcagctcacggCtgatgaagatccctctgagg	12	12	2	5	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	CAPN13	NM_144575	exon20	c.G1823A	p.S608N	TCACGGCTGATGA		39	4	0.1	33	0	0		70		0	0					T	30955408	C	T	30955408	3	4	40	1	0	0	0	0	1	0	0	0	2644	797	28	2	198	2	CAPN13	2	30955408	Missense_Mutation	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10	1892161	30955408	212243965	11	2747											
QPCT	25797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	37599594	37599594	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtgtgattcaggatgacCatattccatttttaagaaga	10	5	1	4	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_012413	exon6	c.C919A	p.H307N	GATGACCATATTC		125	18	0.14	136	0	0				42	7	0.17				A	37599594	C	A	37599594	3	1	40	1	0	0	0	0	1	0	0	0	12925	594	21	3	941	3	QPCT	2	37599594	Missense_Mutation	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10	6644186	37599594	205599779	12	2748											
ARID5A	10865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	97217882	97217882	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttcccggcccacttcctGgccaccgcaggcccctcgcc	9	23	0	0	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_212481	exon7	c.G1617T	p.L539L	CTTCCTGGCCACC		77	16	0.21	69	0	0				24	3	0.13				T	97217882	G	T	97217882	2	4	40	1	0	0	0	0	0	0	0	1	918	1335	47	3		3	ARID5A	2	97217882	Silent	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10	59618288	97217882	145981491	13	2749											
ZEB2	9839	mdanderson.org	37	chr2	145147409	145147409	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgccgcttcccgctcctccGcctcccgcttgcagtaggaa	9	20	0	0	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_014795	exon10	c.C3254A	p.A1085E	TCCTCCGCCTCCC		45	3	0.07	52	0	0				0	0					T	145147409	G	T	145147409	3	4	40	1	0	0	0	0	1	0	0	0	17681	1087	38	1	394	1	ZEB2	2	145147409	Missense_Mutation	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10	47929527	145147409	98051964	14	2750											
SCAP	22937	hgsc.bcm.edu	37	chr3	47459292	47459292	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagcctcaagcccgctgccCacgccactgtcccggcgctg	11	19	1	1	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	SCAP,caecum,carcinoma,-2,1	SCAP	NM_012235	exon17	c.G2472A	p.V824V	GCTGCCCACGCCA		101	21	0.21	141	1	0.0070921986		-2	1	16	2	0.13				T	47459292	C	T	47459292	2	4	40	1	0	0	0	0	0	0	0	1	13929	581	21	3		3	SCAP	3	47459292	Silent	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10		47459292	150563138	15	2751											
EPHA6	285220	hgsc.bcm.edu	37	chr3	97194255	97194255	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tagccaccgccgctgttggcGgattcactctcctcgtcatc	9	16	3	0	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	EPHA6_ENST00000502694,extremity,malignant_melanoma,-1,2	EPHA6_ENST00000502694	NM_001080448	exon8	c.G1954A	p.G652R	GTTGGCGGATTCA		100	4	0.04	124	0	0		-1	2	1	0	0				A	97194255	G	A	97194255	3	1	40	1	0	0	0	0	1	0	0	0	5199	1117	39	1	2052	1	EPHA6	3	97194255	Missense_Mutation	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10	49734963	97194255	100828175	16	2752											
TMEM39A	55254	broad.mit.edu	37	chr3	119156690	119156690	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattctgtggttgaaatctGctttcagacattctacttca	7	8	5	3	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	TMEM39A	NM_018266	exon6	c.C836A	p.A279E	AAATCTGCTTTCA		111	4	0.04	149	0	0		36		56	0	0				T	119156690	G	T	119156690	3	4	40	1	0	0	0	0	1	0	0	0	16220	1319	46	2	646	2	TMEM39A	3	119156690	Missense_Mutation	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10	21962435	119156690	78865740	17	2753											
PLXND1	23129	mdanderson.org	37	chr3	129325111	129325111	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagctgcaggatcttgttGtagttgtccgtgaggcgccg	14	10	1	1	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_015103	exon1	c.C372A	p.Y124X	CTTGTTGTAGTTG		38	3	0.08	43	0	0				9	0	0				T	129325111	G	T	129325111	4	4	40	1	0	0	0	0	0	1	0	0	12174	1372	48	3	5549	3	PLXND1	3	129325111	Nonsense_Mutation	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10	10168421	129325111	68697319	18	2754											
DOK7	285489	mdanderson.org	37	chr4	3494689	3494689	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaagccgctgcgtccgcggCagctgcaggaggttggccgc	16	15	0	0	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_173660	exon7	c.C976T	p.Q326X	CCGCGGCAGCTGC		20	2	0.1	30	0	0				8	0	0				T	3494689	C	T	3494689	4	4	40	1	0	0	0	0	0	1	0	0	4729	711	25	2	1002	2	DOK7	4	3494689	Nonsense_Mutation	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10		3494689	187659587	19	2755											
MSX1	4487	mdanderson.org	37	chr4	4861868	4861868	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccaaggagagcgccctggCgccctccgagggcgtgcagg	18	14	0	1	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_002448	exon1	c.C242T	p.A81V	CCCTGGCGCCCTC		18	2	0.11	28	0	0				1	0	0				T	4861868	C	T	4861868	3	4	40	1	0	0	0	0	1	0	0	0	9942	768	27	1	244	1	MSX1	4	4861868	Missense_Mutation	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10	1367179	4861868	186292408	20	2756											
EPHA5	2044	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	66201775	66201775	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccagcaatccagcattaaCtgatagagagcagcaggaca	10	10	0	2	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_004439	exon16	c.G2727T	p.Q909H	CATTAACTGATAG		270	18	0.07	207	0	0				0	0					A	66201775	C	A	66201775	3	1	40	1	0	0	0	0	1	0	0	0	5198	564	20	3	398	3	EPHA5	4	66201775	Missense_Mutation	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10	61339907	66201775	124952501	21	2757											
PALLD	23022	broad.mit.edu;ucsc.edu	37	chr4	169589444	169589444	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tagcagaggcctttgaggacGacacaggtcgctacacctgt	12	11	0	2	rs148155834	alternate_allele	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	PALLD,NS,carcinoma,0,1	PALLD	NM_001166108	exon3	c.G1012C	p.D338H	GAGGACGACACAG		75	18	0.24	120	3	0.025		179	1	0	0					C	169589444	G	C	169589444	3	2	40	1	0	0	0	0	1	0	0	0	11453	1058	37	5	1018	5	PALLD	4	169589444	Missense_Mutation	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10	103387669	169589444	21564832	22	2758											
DAB2	1601	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	39377194	39377194	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acaacaggcactggagggggAgttgaggctgcaaagggtga	18	6	0	2	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	DAB2	NM_001343	exon12	c.T1695C	p.T565T	AGGGGGAGTTGAG		120	5	0.04	214	1	0.0046728972		124		8	0	0				G	39377194	A	G	39377194	2	3	40	1	0	0	0	0	0	0	0	1	4242	291	11	4		4	DAB2	5	39377194	Silent	SNP	A	TCGA-2G-AAGW-01A-11D-A42Y-10		39377194	141538066	23	2759											
LMNB1	4001	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	126141339	126141339	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtagatttggagaatcgttGtcagagccttactgaggact	12	6	1	4	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	LMNB1	NM_005573	exon3	c.G593T	p.C198F	ATCGTTGTCAGAG		99	5	0.05	112	0	0		49		280	0	0				T	126141339	G	T	126141339	3	4	40	1	0	0	0	0	1	0	0	0	8889	1377	48	3	603	3	LMNB1	5	126141339	Missense_Mutation	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10	86764145	126141339	54773921	24	2760											
SRA1	10011	ucsc.edu	37	chr5	139937054	139937054	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatctccacttccgcttggCcagcggggcagcgcgtcatt	11	16	2	0	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	SRA1	NM_001035235	exon1	c.G20A	p.G7D	GCTTGGCCAGCGG		40	4	0.1	33	0	0		24		5	0	0				T	139937054	C	T	139937054	3	4	40	1	0	0	0	0	1	0	0	0	15187	739	26	2	710	2	SRA1	5	139937054	Missense_Mutation	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10	13795715	139937054	40978206	25	2761											
PCDHA3	56145	mdanderson.org	37	chr5	140182666	140182666	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcgcgtggggctgtacacGggagagatcagcacgacccg	15	11	1	1	rs368819593	alternate_allele	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	PCDHA3_ENST00000522353,colon,carcinoma,+1,2	PCDHA3_ENST00000522353	NM_018906	exon1	c.G1884T	p.T628T	GTACACGGGAGAG		57	3	0.05	60	0	0		1	2	0	0					T	140182666	G	T	140182666	2	4	40	1	0	0	0	0	0	0	0	1	11571	1103	39	1		1	PCDHA3	5	140182666	Silent	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10	245612	140182666	40732594	26	2762											
PDGFRB	5159	mdanderson.org	37	chr5	149502625	149502625	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggcagggggagcccaacGggcagagcattgctgtagag	18	9	0	2	rs146967726	alternate_allele	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_002609	exon15	c.C2163A	p.P721P	CCCAACGGGCAGA		57	3	0.05	66	0	0				7	0	0				T	149502625	G	T	149502625	2	4	40	1	0	0	0	0	0	0	0	1	11708	1103	39	1		1	PDGFRB	5	149502625	Silent	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10	9319959	149502625	31412635	27	2763											
SKIV2L	6499	mdanderson.org	37	chr6	31931719	31931719	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtacctgtccctcctggcCtccctccgcacacgtgccca	8	20	0	0	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_006929	exon16	c.C1677T	p.A559A	CCTGGCCTCCCTC		40	3	0.08	50	0	0				43	1	0.02				T	31931719	C	T	31931719	2	4	40	1	0	0	0	0	0	0	0	1	14413	668	24	3		3	SKIV2L	6	31931719	Silent	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10		31931719	139183348	28	2764											
RUNX2	860	hgsc.bcm.edu	37	chr6	45390482	45390482	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agcaacagcagcagcagcagCaggaggcggcggcggcggct	18	12	0	0	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	RUNX2_ENST00000352853,NS,carcinoma,0,2	RUNX2_ENST00000352853	NM_001024630	exon3	c.C211G	p.Q71E	CAGCAGCAGGAGG		29	2	0.07	28	0	0		0	2	1	0	0				G	45390482	C	G	45390482	3	3	40	1	0	0	0	0	1	0	0	0	13799	711	25	5	233	5	RUNX2	6	45390482	Missense_Mutation	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10	13458763	45390482	125724585	29	2765											
SLC25A27	9481	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	46623642	46623642	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	aaggagaagcagctcttgctCggttgggagacggtgcaaga	16	7	1	3	rs200951505	bycluster;alternate_allele	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	SLC25A27	NM_001204051	exon2	c.C169A	p.R57R	CTTGCTCGGTTGG		113	24	0.21	121	1	0.0082644628		22		1	0	0				A	46623642	C	A	46623642	2	1	40	1	0	0	0	0	0	0	0	1	14544	875	31	1		1	SLC25A27	6	46623642	Silent	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10	1233160	46623642	124491425	30	2766											
COL21A1	81578	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	56035583	56035583	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caatagttaatattctccatAaatcccaaattttcttgact	2	9	2	1	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_030820	exon5	c.T890C	p.L297S	CTCCATAAATCCC		261	24	0.09	230	0	0				2	0	0				G	56035583	A	G	56035583	3	3	40	1	0	0	0	0	1	0	0	0	3703	372	13	4	2087	4	COL21A1	6	56035583	Missense_Mutation	SNP	A	TCGA-2G-AAGW-01A-11D-A42Y-10	9411941	56035583	115079484	31	2767											
WDR27	253769	mdanderson.org	37	chr6	170043874	170043874	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caacccacaggccagccactGcccatctcctgttaaaagaa	6	16	1	1	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_182552	exon17	c.C1666A	p.Q556K	GCCACTGCCCATC		40	3	0.08	61	0	0				3	0	0				T	170043874	G	T	170043874	3	4	40	1	0	0	0	0	1	0	0	0	17343	1328	46	2	943	2	WDR27	6	170043874	Missense_Mutation	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10	114008291	170043874	1071193	32	2768											
TNRC18	84629	broad.mit.edu	37	chr7	5410781	5410781	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagccagcggttcttcctcCgggccctcccgcagcggctc	11	19	2	0	rs374062653		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	TNRC18	NM_001080495	exon11	c.G3444A	p.P1148P	TTCCTCCGGGCCC		116	4	0.03	82	0	0		311		119	0	0				T	5410781	C	T	5410781	2	4	40	1	0	0	0	0	0	0	0	1	16398	639	23	1		1	TNRC18	7	5410781	Silent	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10		5410781	153727882	33	2769											
DBNL	28988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	44098556	44098556	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggagagggccatgtccaCcacctccatctccagtcctc	9	16	1	1	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_001122956	exon9	c.C836A	p.T279N	TGTCCACCACCTC		101	20	0.2	96	0	0				141	41	0.29				A	44098556	C	A	44098556	3	1	40	1	0	0	0	0	1	0	0	0	4279	507	18	3	870	3	DBNL	7	44098556	Missense_Mutation	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10	38687775	44098556	115040107	34	2770											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	151874328	151874328	+	Frame_Shift_Del	DEL	T	T	-													tgggatcattagtttccaaaTtatctaaagtatccaattca					novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	MLL3	NM_170606	exon38	c.8211delT	p.N2737fs	TCCAAATTATCTA		59	20	0.34	97	0	0		1564		1	0	0				-	151874328	T	-	151874328	7	5	40	1	0	1	0	1	0	0	0	0	9669	1493	52	0	6613	0	MLL3	7	151874328	Frame_Shift_Del	DEL	T	TCGA-2G-AAGW-01A-11D-A42Y-10	107775772	151874328	7264335	35	2771											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr8	3855559	3855559	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagtccgcgttgttctcGtactctgaagggaagtgcgg	15	9	2	1	rs372509834	alternate_allele	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_033225	exon5	c.C684G	p.Y228X	GTTCTCGTACTCT		117	13	0.11	144	0	0				0	0					C	3855559	G	C	3855559	4	2	40	1	0	0	0	0	0	1	0	0	3969	1140	40	5	10087	5	CSMD1	8	3855559	Nonsense_Mutation	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10		3855559	142508463	36	2772											
SULF1	23213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	70533339	70533339	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaaaggacccagtgacctgCtcacagtccggcagagcacg	12	13	1	2	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_001128205	exon14	c.C1447T	p.L483F	GACCTGCTCACAG		164	49	0.3	92	0	0				0	0					T	70533339	C	T	70533339	3	4	40	1	0	0	0	0	1	0	0	0	15425	797	28	2	1485	2	SULF1	8	70533339	Missense_Mutation	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10	66677780	70533339	75830683	37	2773											
UBAP2	55833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	33953311	33953311	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggagaacaggagttgacgGcagtggagctgccagtccct	16	9	0	2	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_018449	exon12	c.C1028T	p.A343V	TTGACGGCAGTGG		131	21	0.16	164	0	0				48	12	0.25				A	33953311	G	A	33953311	3	1	40	1	0	0	0	0	1	0	0	0	16897	1203	42	2	2403	2	UBAP2	9	33953311	Missense_Mutation	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10		33953311	107260120	38	2774											
DOLPP1	57171	ucsc.edu	37	chr9	131851281	131851281	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaagctggggacgaaactgCagtgaccagtgggtgtggct	17	8	0	1	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	DOLPP1	NM_020438	exon8	c.C712T	p.Q238X	AAACTGCAGTGAC		37	4	0.11	47	0	0		17		76	0	0				T	131851281	C	T	131851281	4	4	40	1	0	0	0	0	0	1	0	0	4731	711	25	2	742	2	DOLPP1	9	131851281	Nonsense_Mutation	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10	97897970	131851281	9362150	39	2775											
C9orf139	401563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	139927646	139927646	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaccttgtgtggtcccaggCgtggccagacccagacgtcc	14	14	0	2	rs368472017		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_207511	exon2	c.C131A	p.A44E	CCCAGGCGTGGCC		57	17	0.3	103	0	0				0	0					A	139927646	C	A	139927646	3	1	40	1	0	0	0	0	1	0	0	0	2477	768	27	1	133	1	C9orf139	9	139927646	Missense_Mutation	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10	8076365	139927646	1285785	40	2776											
NEBL	10529	mdanderson.org	37	chr10	21141490	21141490	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtacctgactttggaggacgGcattgcctttatggtgcaga	13	8	0	2	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_006393	exon10	c.C992T	p.A331V	AGGACGGCATTGC		30	3	0.1	42	0	0				0	0					A	21141490	G	A	21141490	3	1	40	1	0	0	0	0	1	0	0	0	10349	1203	42	2	2128	2	NEBL	10	21141490	Missense_Mutation	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10		21141490	114393257	41	2777											
GDF2	2658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	48413904	48413904	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgacagtggctgccagcccCggcgctccttttccgcctgg	12	16	0	1	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_016204	exon2	c.G964A	p.G322R	CAGCCCCGGCGCT		62	16	0.26	91	0	0				0	0					T	48413904	C	T	48413904	3	4	40	1	0	0	0	0	1	0	0	0	6355	652	23	1	329	1	GDF2	10	48413904	Missense_Mutation	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10	27272414	48413904	87120843	42	2778											
MUC6	4588	bcgsc.ca	37	chr11	1016870	1016871	+	Missense_Mutation	DNP	GG	GG	AT													ataggacctgtggaagagaaGggactgctccctgtaggtgg					novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	GG	GG					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	MUC6	NM_005961	exon31	c.C5930A	p.P1977H	AGAGAAGGGACTG		280	13	0.05	610	3	0.0049180328		408		1	0	0				AT	1016871	GG	AT	1016870	3	1	40	1	0	0	0	0	1	0	0	0	10027	987	35	3	1400	3	MUC6	11	1016870	Missense_Mutation	DNP	GG	TCGA-2G-AAGW-01A-11D-A42Y-10		1016870	133989646	43	2779											
SLC15A3	51296	mdanderson.org	37	chr11	60718892	60718892	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgaagaaggcggcgcgctcCagcatctccaccagcagcac	11	17	1	1	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_016582	exon1	c.G132A	p.L44L	GCGCTCCAGCATC		46	3	0.07	88	0	0				2	0	0				T	60718892	C	T	60718892	2	4	40	1	0	0	0	0	0	0	0	1	14454	581	21	3		3	SLC15A3	11	60718892	Silent	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10	59702022	60718892	74287624	44	2780											
IGHMBP2	3508	mdanderson.org	37	chr11	68704480	68704480	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagagggtcaggagcgcGcaggggcagcccgccagcaa	17	13	1	1	rs2228207	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_002180	exon13	c.G2532T	p.A844A	GAGCGCGCAGGGG		20	2	0.1	27	0	0				13	0	0				T	68704480	G	T	68704480	2	4	40	1	0	0	0	0	0	0	0	1	7634	1074	38	1		1	IGHMBP2	11	68704480	Silent	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10	7985588	68704480	66302036	45	2781											
FZD4	8322	mdanderson.org	37	chr11	86662968	86662968	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcacaggatatcctttccCggcctacagtcagcctgaca	7	14	2	1	rs148970041		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_012193	exon2	c.G830A	p.R277Q	CTTTCCCGGCCTA		39	3	0.08	81	0	0	0			2	0	0				T	86662968	C	T	86662968	3	4	40	1	0	0	0	0	1	0	0	0	6166	652	23	1	787	1	FZD4	11	86662968	Missense_Mutation	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10	17958488	86662968	48343548	46	2782											
FOXJ2	55810	broad.mit.edu	37	chr12	8196601	8196601	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agagcccacggggaggcgttGcagggagtggagaagcctca	18	9	1	2	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	FOXJ2	NM_018416	exon5	c.G532T	p.A178S	GGCGTTGCAGGGA		317	5	0.02	109	0	0		43		6	0	0				T	8196601	G	T	8196601	3	4	40	1	0	0	0	0	1	0	0	0	6045	1319	46	2	546	2	FOXJ2	12	8196601	Missense_Mutation	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10		8196601	125655294	47	2783											
KIF21A	55605	broad.mit.edu	37	chr12	39735383	39735383	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcctcctcctcctcctcCtcttcttcatcctcatgatc	1	20	5	1	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	KIF21A,NS,carcinoma,0,2	KIF21A	NM_001173464	exon14	c.G1845A	p.E615E	CTCCTCCTCTTCT		334	5	0.01	138	1	0.0072463768		238	2	23	0	0				T	39735383	C	T	39735383	2	4	40	1	0	0	0	0	0	0	0	1	8329	680	24	3		3	KIF21A	12	39735383	Silent	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10	31538782	39735383	94116512	48	2784											
DDX23	9416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	49231066	49231066	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcctgaagccactcacagGgggttgtagtcaatggatgt	14	8	2	1	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_004818	exon8	c.C864T	p.P288P	TCACAGGGGGTTG		143	44	0.31	148	0	0				174	60	0.34				A	49231066	G	A	49231066	2	1	40	1	0	0	0	0	0	0	0	1	4373	1219	43	3		3	DDX23	12	49231066	Silent	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10	9495683	49231066	84620829	49	2785											
TROAP	10024	ucsc.edu	37	chr12	49718012	49718012	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcaaaatgtcatctcgccAggtgccatggcttgtacctg	10	12	2	0	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	TROAP	NM_001100620	exon4	c.A412G	p.R138G	CTCGCCAGGTGCC		166	1	0.01	208	0	0		80		109	15	0.14				G	49718012	A	G	49718012	3	3	40	1	0	0	0	0	1	0	0	0	16635	179	7	4	422	4	TROAP	12	49718012	Missense_Mutation	SNP	A	TCGA-2G-AAGW-01A-11D-A42Y-10	486946	49718012	84133883	50	2786											
RAB5B	5869	broad.mit.edu	37	chr12	56383797	56383797	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttgagatctgggacacagCtgggcaggagcgatatcaca	14	8	2	1	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	RAB5B	NM_002868	exon3	c.C230T	p.A77V	ACACAGCTGGGCA		429	7	0.02	285	0	0		22		49	0	0				T	56383797	C	T	56383797	3	4	40	1	0	0	0	0	1	0	0	0	13000	797	28	2	236	2	RAB5B	12	56383797	Missense_Mutation	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10	6665785	56383797	77468098	51	2787											
CCDC64	92558	broad.mit.edu;bcgsc.ca	37	chr12	120427911	120427911	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaacaccctcaggccgagcCtgggtctctggccgaggggg	17	13	2	0	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	CCDC64	NM_207311	exon1	c.C239T	p.P80L	CCGAGCCTGGGTC		74	23	0.31	60	1	0.0166666667		40		2	2	1				T	120427911	C	T	120427911	3	4	40	1	0	0	0	0	1	0	0	0	2855	681	24	3	241	3	CCDC64	12	120427911	Missense_Mutation	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10	64044114	120427911	13423984	52	2788											
PARP4	143	mdanderson.org	37	chr13	25052312	25052312	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcttcagttaaggaaaaGtccttctcatgtaagtccat	9	8	2	0	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_006437	exon13	c.C1551A	p.D517E	GGAAAAGTCCTTC		49	3	0.06	84	0	0				8	0	0				T	25052312	G	T	25052312	3	4	40	1	0	0	0	0	1	0	0	0	11509	1020	36	3	3711	3	PARP4	13	25052312	Missense_Mutation	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10		25052312	90117566	53	2789											
MCF2L	23263	mdanderson.org	37	chr13	113718631	113718631	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccaggtcataatgctgaGctccgtaccagacttacacg	8	14	1	2	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_001112732	exon6	c.G503T	p.S168I	TGCTGAGCTCCGT		52	3	0.06	74	0	0				5	0	0				T	113718631	G	T	113718631	3	4	40	1	0	0	0	0	1	0	0	0	9428	971	34	2	791	2	MCF2L	13	113718631	Missense_Mutation	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10	88666319	113718631	1451247	54	2790											
NFATC4	4776	broad.mit.edu	37	chr14	24841659	24841659	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacccaggacctctgccctAcccccactggactggcctct	7	21	2	0	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	NFATC4	NM_001198967	exon4	c.A1398C	p.L466L	TGCCCTACCCCCA		46	10	0.22	59	8	0.1355932203		115		1	1	1				C	24841659	A	C	24841659	2	2	40	1	0	0	0	0	0	0	0	1	10411	378	14	4		4	NFATC4	14	24841659	Silent	SNP	A	TCGA-2G-AAGW-01A-11D-A42Y-10		24841659	82507881	55	2791											
ATXN3	4287	hgsc.bcm.edu	37	chr14	92537354	92537355	+	In_Frame_Ins	INS	-	-	CTGCTGCTGCTGCTGCTGCTG													ctctgtcctgataggtccccINSctgctgctgctgctgctgct					rs76478261	alternate_allele	TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	ATXN3,NS,carcinoma,0,7	ATXN3	NM_004993	exon10	c.916_917insCAGCAGCAGCAGCAGCAGCAG	p.G306delinsQQQQQQQG	GGTCCCCCTGCTG		60	0	0	83	0	0		46		53	0	0				CTGCTGCTGCTGCTGCTGCTG	92537355	-	CTGCTGCTGCTGCTGCTGCTG	92537354	7	5	40	1	0	1	1	0	0	0	0	0	1211	623	22	0	177	0	ATXN3	14	92537354	In_Frame_Ins	INS	-	TCGA-2G-AAGW-01A-11D-A42Y-10	67695695	92537354	14812186	56	2792											
TBL3	10607	mdanderson.org	37	chr16	2024674	2024674	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accccacctccactctgctaGccacaggtagggccctgccg	9	19	1	0	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_006453	exon5	c.G373T	p.A125S	CTGCTAGCCACAG		33	3	0.09	49	0	0				72	0	0				T	2024674	G	T	2024674	3	4	40	1	0	0	0	0	1	0	0	0	15702	971	34	2	391	2	TBL3	16	2024674	Missense_Mutation	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10		2024674	88330079	57	2793											
FAM86A	196483	bcgsc.ca	37	chr16	5141852	5141852	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccatcagggtctccgccagCgcttcatacagctcgtccaa	9	16	3	0	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	FAM86A	NM_201400	exon4	c.G285A	p.A95A	CGCCAGCGCTTCA		236	23	0.1	357	5	0.0140056022		32		23	0	0				T	5141852	C	T	5141852	2	4	40	1	0	0	0	0	0	0	0	1	5674	755	27	1		1	FAM86A	16	5141852	Silent	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10	3117178	5141852	85212901	58	2794											
SMPD3	55512	broad.mit.edu	37	chr16	68397765	68397767	+	In_Frame_Del	DEL	GTC	GTC	-													gagtgttgctgctccagcttGtcgtctgtgcggggagggag					novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	GTC	GTC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	SMPD3	NM_018667	exon6	c.1558_1560del	p.520_520del	CAGCTTGTCGTCT		27	8	0.3	30	0	0		52		0	0					-	68397767	GTC	-	68397765	7	5	40	1	0	1	0	1	0	0	0	0	14859	1368	48	0	423	0	SMPD3	16	68397765	In_Frame_Del	DEL	GTC	TCGA-2G-AAGW-01A-11D-A42Y-10	63255913	68397765	21956988	59	2795											
SLFN5	162394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	33591734	33591734	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggttttgaacctactgacAaataaacagtatgagttgct	9	6	0	3	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_144975	exon4	c.A1671T	p.T557T	ACTGACAAATAAA		126	17	0.13	135	0	0				1	0	0				T	33591734	A	T	33591734	2	4	40	1	0	0	0	0	0	0	0	1	14790	117	5	5		5	SLFN5	17	33591734	Silent	SNP	A	TCGA-2G-AAGW-01A-11D-A42Y-10		33591734	47603476	60	2796											
KCNH4	23415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	40323897	40323897	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cagtgggcaaggagcgcaaaGaccgacatgagcagcgtgag	16	9	0	3	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	KCNH4,bladder,carcinoma,0,1	KCNH4	NM_012285	exon7	c.C1104T	p.V368V	CGCAAAGACCGAC		86	26	0.3	111	0	0		0	1	0	0					A	40323897	G	A	40323897	2	1	40	1	0	0	0	0	0	0	0	1	8077	929	33	3		3	KCNH4	17	40323897	Silent	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10	6732163	40323897	40871313	61	2797											
GNAL	2774	broad.mit.edu	37	chr18	11824997	11824997	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agatccaacgaataccagctGattgactgtgcacaatagta	8	9	0	3	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	GNAL	NM_182978	exon5	c.G705T	p.L235L	CCAGCTGATTGAC		64	3	0.05	130	0	0		59		20	0	0				T	11824997	G	T	11824997	2	4	40	1	0	0	0	0	0	0	0	1	6548	1277	45	3		3	GNAL	18	11824997	Silent	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10		11824997	66252251	62	2798											
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	31324017	31324017	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctgcagtgattctgtagCggtcacagactctctggttg	12	10	3	2	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_030632	exon12	c.C4205T	p.A1402V	CTGTAGCGGTCAC		72	32	0.44	149	0	0				0	0					T	31324017	C	T	31324017	3	4	40	1	0	0	0	0	1	0	0	0	1067	768	27	1	4251	1	ASXL3	18	31324017	Missense_Mutation	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10	19499020	31324017	46753231	63	2799											
TSHZ1	10194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	72999575	72999575	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcatcatggaccactcacCggagccttccttcatcaacc	6	16	5	0	rs370322226		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	TSHZ1,NS,lymphoid_neoplasm,0,1	TSHZ1	NM_005786	exon2	c.C2078T	p.P693L	ACTCACCGGAGCC		32	8	0.25	46	0	0		0	1	2	0	0				T	72999575	C	T	72999575	3	4	40	1	0	0	0	0	1	0	0	0	16683	652	23	1	2080	1	TSHZ1	18	72999575	Missense_Mutation	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10	41675558	72999575	5077673	64	2800											
SAFB2	9667	mdanderson.org	37	chr19	5593989	5593989	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgcagctcctcgcgctcgCggtggatgcgctcctgctcc	13	18	0	0	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_014649	exon15	c.G2120T	p.R707L	CGCTCGCGGTGGA		10	2	0.2	16	0	0				67	0	0				A	5593989	C	A	5593989	3	1	40	1	0	0	0	0	1	0	0	0	13858	768	27	1	769	1	SAFB2	19	5593989	Missense_Mutation	SNP	C	TCGA-2G-AAGW-01A-11D-A42Y-10		5593989	53534994	65	2801											
NOTCH3	4854	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	15299844	15299844	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcctatgcggtcgaggcacGtggcctggtttcggcagggc	18	11	0	0	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	NOTCH3	NM_000435	exon8	c.C1334G	p.T445R	AGGCACGTGGCCT		86	16	0.19	103	1	0.0097087379		340		10	1	0.1				C	15299844	G	C	15299844	3	2	40	1	0	0	0	0	1	0	0	0	10596	1145	40	5	5735	5	NOTCH3	19	15299844	Missense_Mutation	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10	9705855	15299844	43829139	66	2802											
ZNF536	9745	mdanderson.org	37	chr19	30934497	30934497	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcgagcctgtgccttggaGtgtcttcggcggagccggaa	16	10	1	0	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_014717	exon2	c.G28T	p.V10L	CTTGGAGTGTCTT		31	3	0.1	75	0	0				0	0					T	30934497	G	T	30934497	3	4	40	1	0	0	0	0	1	0	0	0	18030	1029	36	3	30	3	ZNF536	19	30934497	Missense_Mutation	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10	15634653	30934497	28194486	67	2803											
RBCK1	10616	ucsc.edu;bcgsc.ca	37	chr20	409639	409639	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atgcgctgcccccagtgccaGatcgtggtacagaagaagga	13	11	0	3	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	RBCK1,NS,carcinoma,0,1	RBCK1	NM_031229	exon11	c.G1353T	p.Q451H	GTGCCAGATCGTG		38	4	0.11	73	0	0		38	1	49	0	0				T	409639	G	T	409639	3	4	40	1	0	0	0	0	1	0	0	0	13158	933	33	3	1414	3	RBCK1	20	409639	Missense_Mutation	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10		409639	62615881	68	2804											
TRMT6	51605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	5923280	5923280	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttggctctgaagataacaTcttggcagaaaatgttccat	8	7	2	3	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	.	NM_015939	exon7	c.A820G	p.M274V	ATAACATCTTGGC		116	74	0.64	208	0	0				57	28	0.49				C	5923280	T	C	5923280	3	2	40	1	0	0	0	0	1	0	0	0	16628	1435	50	4	693	4	TRMT6	20	5923280	Missense_Mutation	SNP	T	TCGA-2G-AAGW-01A-11D-A42Y-10	5513641	5923280	57102240	69	2805											
FLNA	0	broad.mit.edu;mdanderson.org	37	chrX	153589789	153589789	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctcacggggcaggaagcGcaccacactgttgtcagccc	11	15	2	0	novel		TCGA-2G-AAGW-01A-11D-A42Y-10	TCGA-2G-AAGW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fc9dbc-9462-4d14-ab52-51016b37351f	ec835e9e-7490-4325-8e2d-0823a9bfd9be	.	FLNA	NM_001456	exon21	c.C3094T	p.R1032C	GGAAGCGCACCAC		80	4	0.05	66	0	0		373		111	0	0				A	153589789	G	A	153589789	3	1	40	1	0	0	0	0	1	0	0	0	5965	1087	38	1	4961	1	FLNA	23	153589789	Missense_Mutation	SNP	G	TCGA-2G-AAGW-01A-11D-A42Y-10		153589789	1680771	70	2806											
CCNL2	81669	broad.mit.edu	37	chr1	1334663	1334664	+	In_Frame_Ins	INS	-	-	GCCGCC													ctgccgaccctgcagcaccaINSgccgccgccgccgccgccgc					novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	CCNL2,brain,glioma,-2,1	CCNL2	NM_030937	exon1	c.24_25insGGCGGC	p.A8delinsAAA	AGCACCAGCCGCC		31	7	0.23	24	0	0		54	1	6	0	0				GCCGCC	1334664	-	GCCGCC	1334663	7	5	41	1	0	1	1	0	0	0	0	0	2954	175	7	0	1608	0	CCNL2	1	1334663	In_Frame_Ins	INS	-	TCGA-2G-AAGX-01A-11D-A42Y-10		1334663	247915958	1	2807											
NPHP4	261734	broad.mit.edu;mdanderson.org	37	chr1	5935039	5935039	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccccagcgtggcgtggagcGtgtgctccgtggtgatggcc	17	13	0	1	rs199645515		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	NPHP4	NM_015102	exon21	c.C2939T	p.T980M	TGGAGCGTGTGCT		63	5	0.08	36	0	0		119		26	0	0				A	5935039	G	A	5935039	3	1	41	1	0	0	0	0	1	0	0	0	10627	1145	40	1	1381	1	NPHP4	1	5935039	Missense_Mutation	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10	4600376	5935039	243315582	2	2808											
GMEB1	10691	broad.mit.edu	37	chr1	29018151	29018151	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgcttaccccataacttGtggggagagcaaagccatcc	9	11	0	1	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	GMEB1	NM_006582	exon4	c.G296T	p.C99F	TAACTTGTGGGGA		90	3	0.03	102	1	0.0098039216		28		11	0	0				T	29018151	G	T	29018151	3	4	41	1	0	0	0	0	1	0	0	0	6528	1377	48	3	306	3	GMEB1	1	29018151	Missense_Mutation	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10	23083112	29018151	220232470	3	2809											
GRIK3	2899	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	37325605	37325605	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcggtagggctccaggtctAaagcgtagagatcctggata	14	8	1	1	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	GRIK3	NM_000831	exon6	c.T800C	p.L267S	AGGTCTAAAGCGT		123	43	0.35	93	1	0.0107526882		195		6	3	0.5				G	37325605	A	G	37325605	3	3	41	1	0	0	0	0	1	0	0	0	6815	372	13	4	2003	4	GRIK3	1	37325605	Missense_Mutation	SNP	A	TCGA-2G-AAGX-01A-11D-A42Y-10	8307454	37325605	211925016	4	2810											
SPTA1	6708	mdanderson.org	37	chr1	158609464	158609464	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctgatctttcatggccaGcaatgtctctgcctggaaat	10	11	3	1	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_003126	exon35	c.C4888A	p.L1630M	TGGCCAGCAATGT		113	5	0.04	118	0	0				1	0	0				T	158609464	G	T	158609464	3	4	41	1	0	0	0	0	1	0	0	0	15171	962	34	2	2443	2	SPTA1	1	158609464	Missense_Mutation	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10	121283859	158609464	90641157	5	2811											
FMN2	56776	broad.mit.edu	37	chr1	240371517	240371517	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ataccccctcctccccctctTcccggagcgggcatacctcc	6	22	1	0	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	FMN2,NS,carcinoma,+2,1	FMN2	NM_020066	exon5	c.T3405A	p.L1135L	CCCTCTTCCCGGA		73	6	0.08	63	3	0.0476190476		451	1	0	0					A	240371517	T	A	240371517	2	1	41	1	0	0	0	0	0	0	0	1	5982	1770	62	5		5	FMN2	1	240371517	Silent	SNP	T	TCGA-2G-AAGX-01A-11D-A42Y-10	81762053	240371517	8879104	6	2812											
ADSS	159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	244601040	244601040	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcatattccacagaatccaCaacaactgtatggccagcat	5	12	1	1	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_001126	exon2	c.G214A	p.V72M	AATCCACAACAAC		86	32	0.37	116	0	0				72	17	0.24				T	244601040	C	T	244601040	3	4	41	1	0	0	0	0	1	0	0	0	346	478	17	3	1204	3	ADSS	1	244601040	Missense_Mutation	SNP	C	TCGA-2G-AAGX-01A-11D-A42Y-10	4229523	244601040	4649581	7	2813											
FBXO41	150726	mdanderson.org	37	chr2	73496315	73496315	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagcgggatctcgatctcGcgcagcgcatagcgcgctgc	13	16	2	0	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_001080410	exon1	c.C444A	p.R148R	GATCTCGCGCAGC		22	2	0.09	19	0	0				1	0	0				T	73496315	G	T	73496315	2	4	41	1	0	0	0	0	0	0	0	1	5782	1074	38	1		1	FBXO41	2	73496315	Silent	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10		73496315	169703058	8	2814											
SEPT10	151011	broad.mit.edu	37	chr2	110301827	110301828	+	Frame_Shift_Ins	INS	-	-	T													aaatcaaagcacacttctagINStttttttttaataaagtttg					novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	SEPT10	.	.	.	.	CTTCTAGTTTTTT		44	7	0.16	52	0	0		58		94	0	0				T	110301828	-	T	110301827	7	5	41	1	0	1	1	0	0	0	0	0	14113	1044	36	0		0	SEPT10	2	110301827	Frame_Shift_Ins	INS	-	TCGA-2G-AAGX-01A-11D-A42Y-10	36805512	110301827	132897546	9	2815											
SNRK	54861	mdanderson.org	37	chr3	43345230	43345230	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacaagctgtggatctcttGcatattccgctccagaaatt	7	11	1	1	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_017719	exon3	c.G535T	p.A179S	TCTCTTGCATATT		140	5	0.04	137	1	0.0072992701				39	0	0				T	43345230	G	T	43345230	3	4	41	1	0	0	0	0	1	0	0	0	14904	1319	46	2	537	2	SNRK	3	43345230	Missense_Mutation	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10		43345230	154677200	10	2816											
CDHR4	389118	mdanderson.org	37	chr3	49830732	49830732	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctcacactcgggggcatGgtcattcacatcctgcagaa	12	12	3	1	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_001007540	exon13	c.C1636A	p.H546N	GGGCATGGTCATT		44	3	0.07	33	0	0				11	0	0				T	49830732	G	T	49830732	3	4	41	1	0	0	0	0	1	0	0	0	3143	1348	47	3	758	3	CDHR4	3	49830732	Missense_Mutation	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10	6485502	49830732	148191698	11	2817											
MUC4	4585	mdanderson.org	37	chr3	195511763	195511763	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctgtggatgctgaggaagTgtcggtgacaagaagaggga	17	5	0	4	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_018406	exon2	c.A6688G	p.T2230A	AGGAAGTGTCGGT		206	10	0.05	188	1	0.0053191489				3	0	0				C	195511763	T	C	195511763	3	2	41	1	0	0	0	0	1	0	0	0	10025	1696	59	4		4	MUC4	3	195511763	Missense_Mutation	SNP	T	TCGA-2G-AAGX-01A-11D-A42Y-10	145681031	195511763	2510667	12	2818											
UGT2A3	79799	mdanderson.org	37	chr4	69817391	69817391	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaatggctcatgtcacaggGccacaccaggactttcccac	8	16	2	0	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_024743	exon1	c.C88T	p.P30S	CACAGGGCCACAC		51	3	0.06	38	0	0				5	0	0				A	69817391	G	A	69817391	3	1	41	1	0	0	0	0	1	0	0	0	17014	1203	42	2	1519	2	UGT2A3	4	69817391	Missense_Mutation	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10		69817391	121336885	13	2819											
NSD1	64324	mdanderson.org	37	chr5	176721079	176721079	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agggccaagcactcacctggCagagcaatcaacaggaatgg	12	11	2	1	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_022455	exon23	c.C6710T	p.A2237V	ACCTGGCAGAGCA		46	3	0.07	69	0	0				62	0	0				T	176721079	C	T	176721079	3	4	41	1	0	0	0	0	1	0	0	0	10716	710	25	2	6796	2	NSD1	5	176721079	Missense_Mutation	SNP	C	TCGA-2G-AAGX-01A-11D-A42Y-10		176721079	4194181	14	2820											
PRR7	80758	mdanderson.org	37	chr5	176882733	176882733	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cccactccgcagcggaatcgGacatgtccaaaccaccgtgt	9	16	0	0	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_001174102	exon3	c.G436T	p.D146Y	GAATCGGACATGT		45	3	0.07	52	0	0				11	0	0				T	176882733	G	T	176882733	3	4	41	1	0	0	0	0	1	0	0	0	12652	1174	41	3	442	3	PRR7	5	176882733	Missense_Mutation	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10	161654	176882733	4032527	15	2821											
UNC5CL	222643	mdanderson.org	37	chr6	41002533	41002533	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acagtttgtgcatcaactggCggaccatggtctggccttga	12	10	2	1	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	UNC5CL,colon,carcinoma,-1,1	UNC5CL	NM_173561	exon2	c.G281A	p.R94H	AACTGGCGGACCA		39	3	0.08	29	0	0		-1	1	3	0	0				T	41002533	C	T	41002533	3	4	41	1	0	0	0	0	1	0	0	0	17053	768	27	1	1307	1	UNC5CL	6	41002533	Missense_Mutation	SNP	C	TCGA-2G-AAGX-01A-11D-A42Y-10		41002533	130112534	16	2822											
ABCC10	89845	broad.mit.edu	37	chr6	43403589	43403589	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccaaagtgtccttggaccGgatccagcttttcctcgacc	10	14	0	0	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	ABCC10,NS,carcinoma,0,2	ABCC10	NM_001198934	exon5	c.G1709T	p.R570L	TGGACCGGATCCA		546	6	0.01	459	0	0		118	2	28	0	0				T	43403589	G	T	43403589	3	4	41	1	0	0	0	0	1	0	0	0	50	1116	39	1	1590	1	ABCC10	6	43403589	Missense_Mutation	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10	2401056	43403589	127711478	17	2823											
SSPO	23145	mdanderson.org	37	chr7	149499203	149499203	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgggcctcaccttccagcGccaggagctgctgcggcctc	12	18	1	0	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_198455	exon51	c.G7571T	p.R2524L	TCCAGCGCCAGGA		15	3	0.2	10	0	0				0	0					T	149499203	G	T	149499203	3	4	41	1	0	0	0	0	1	0	0	0	15244	1087	38	1	7769	1	SSPO	7	149499203	Missense_Mutation	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10		149499203	9639460	18	2824											
PHYHIP	9796	broad.mit.edu	37	chr8	22079280	22079280	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggagtcctgcgggggctgGcccgtgttgaactccgtgtt	18	10	0	1	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	PHYHIP	NM_014759	exon5	c.C579A	p.G193G	GGGCTGGCCCGTG		162	11	0.07	97	0	0		24		13	1	0.08				T	22079280	G	T	22079280	2	4	41	1	0	0	0	0	0	0	0	1	11913	1190	42	2		2	PHYHIP	8	22079280	Silent	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10		22079280	124284742	19	2825											
SORBS3	10174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	22424177	22424177	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgtgcttctccacagaccCtagtgcctctaacggagggg	12	12	2	1	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_005775	exon14	c.C1094T	p.P365L	CAGACCCTAGTGC		179	46	0.26	113	0	0				441	95	0.22				T	22424177	C	T	22424177	3	4	41	1	0	0	0	0	1	0	0	0	14982	681	24	3	1144	3	SORBS3	8	22424177	Missense_Mutation	SNP	C	TCGA-2G-AAGX-01A-11D-A42Y-10	344897	22424177	123939845	20	2826											
BAI1	575	mdanderson.org	37	chr8	143603471	143603471	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caagcgcttcctctgcctggGctggggtgagccgcggcctt	15	14	1	1	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	BAI1,NS,carcinoma,-1,1	BAI1	NM_001702	exon20	c.G3170T	p.G1057V	GCCTGGGCTGGGG		36	3	0.08	19	0	0		-1	1	8	0	0				T	143603471	G	T	143603471	3	4	41	1	0	0	0	0	1	0	0	0	1296	1203	42	2	3248	2	BAI1	8	143603471	Missense_Mutation	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10	121179294	143603471	2760551	21	2827											
ZNF7	7553	hgsc.bcm.edu	37	chr8	146067136	146067136	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagatatcgctctgcattGggaaattaatacacagaaaa	7	7	2	2	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_003416	exon5	c.G644T	p.W215L	TGCATTGGGAAAT		100	4	0.04	51	0	0				68	0	0				T	146067136	G	T	146067136	3	4	41	1	0	0	0	0	1	0	0	0	18157	1357	47	3	658	3	ZNF7	8	146067136	Missense_Mutation	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10	2463665	146067136	296886	22	2828											
ZNF189	7743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	104171915	104171915	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagcatcagaaattgcacaCagcatggatgcaataaatgt	8	8	2	1	rs200682925	alternate_allele	TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	ZNF189,NS,carcinoma,0,1	ZNF189	NM_003452	exon3	c.C1865G	p.T622R	TGCACACAGCATG		60	24	0.4	76	0	0		0	1	42	21	0.5				G	104171915	C	G	104171915	3	3	41	1	0	0	0	0	1	0	0	0	17811	478	17	5	1875	5	ZNF189	9	104171915	Missense_Mutation	SNP	C	TCGA-2G-AAGX-01A-11D-A42Y-10		104171915	37041516	23	2829											
CRB2	286204	mdanderson.org	37	chr9	126133061	126133061	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgggggacgcgacctttGcaggctgcctccaggacgtg	16	12	0	0	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_173689	exon7	c.G1729T	p.A577S	ACCTTTGCAGGCT		14	2	0.14	23	0	0				2	0	0				T	126133061	G	T	126133061	3	4	41	1	0	0	0	0	1	0	0	0	3872	1319	46	2	1755	2	CRB2	9	126133061	Missense_Mutation	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10	21961146	126133061	15080370	24	2830											
NACC2	138151	mdanderson.org	37	chr9	138903726	138903726	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggcggagcccatgaccgtgCggtacatctccacgccctcc	11	18	1	1	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	NACC2,colon,carcinoma,-1,1	NACC2	NM_144653	exon6	c.G1400A	p.R467H	ACCGTGCGGTACA		13	2	0.15	17	0	0		-1	1	30	0	0				T	138903726	C	T	138903726	3	4	41	1	0	0	0	0	1	0	0	0	10183	768	27	1	367	1	NACC2	9	138903726	Missense_Mutation	SNP	C	TCGA-2G-AAGX-01A-11D-A42Y-10	12770665	138903726	2309705	25	2831											
SNAPC4	6621	mdanderson.org	37	chr9	139286450	139286450	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgtgtgcagccgcgatcgCctgcagccgctcctcctcct	11	19	0	0	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_003086	exon9	c.G919A	p.A307T	CGATCGCCTGCAG		40	3	0.08	61	0	0				26	0	0				T	139286450	C	T	139286450	3	4	41	1	0	0	0	0	1	0	0	0	14890	739	26	2	3546	2	SNAPC4	9	139286450	Missense_Mutation	SNP	C	TCGA-2G-AAGX-01A-11D-A42Y-10	382724	139286450	1926981	26	2832											
DLG5	9231	mdanderson.org	37	chr10	79577631	79577631	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcaggtccaggctcaggcGtccctggtgctggacactgc	14	14	2	0	rs147253082	alternate_allele	TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_004747	exon18	c.C3688A	p.R1230S	TCAGGCGTCCCTG		51	3	0.06	40	0	0				74	0	0				T	79577631	G	T	79577631	3	4	41	1	0	0	0	0	1	0	0	0	4586	1145	40	1	2131	1	DLG5	10	79577631	Missense_Mutation	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10		79577631	55957116	27	2833											
MYOF	26509	mdanderson.org	37	chr10	95123740	95123740	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catccgtgtaggtgtcctcgGccggcttccagtcgcccccg	12	17	0	0	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_013451	exon27	c.C2846A	p.A949D	TCCTCGGCCGGCT		50	3	0.06	57	0	0				100	0	0				T	95123740	G	T	95123740	3	4	41	1	0	0	0	0	1	0	0	0	10136	1203	42	2	3451	2	MYOF	10	95123740	Missense_Mutation	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10	15546109	95123740	40411007	28	2834											
MMS19	64210	broad.mit.edu	37	chr10	99221310	99221310	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcagcagcggtggaagaaaAggggcagctgtggcagcagc	19	8	0	1	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	MMS19	NM_022362	exon23	c.T2254C	p.F752L	AAGAAAAGGGGCA		141	3	0.02	153	0	0		36		90	0	0				G	99221310	A	G	99221310	3	3	41	1	0	0	0	0	1	0	0	0	9720	72	3	4	874	4	MMS19	10	99221310	Missense_Mutation	SNP	A	TCGA-2G-AAGX-01A-11D-A42Y-10	4097570	99221310	36313437	29	2835											
MUC2	4583	mdanderson.org	37	chr11	1092961	1092961	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaccaccactacggtgaccCcaaccccaacacccaccggc	5	23	0	1	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_002457	exon30	c.C4780T	p.P1594S	GTGACCCCAACCC		29	2	0.07	24	0	0				11	0	0				T	1092961	C	T	1092961	3	4	41	1	0	0	0	0	1	0	0	0	10022	623	22	3	4898	3	MUC2	11	1092961	Missense_Mutation	SNP	C	TCGA-2G-AAGX-01A-11D-A42Y-10		1092961	133913555	30	2836											
MYBPC3	4607	mdanderson.org	37	chr11	47365120	47365120	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagccagttccacggtcagCcggatcttgtggcctttgct	11	13	3	0	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_000256	exon13	c.G1146A	p.R382R	GGTCAGCCGGATC		46	3	0.07	70	0	0				0	0					T	47365120	C	T	47365120	2	4	41	1	0	0	0	0	0	0	0	1	10060	726	26	2		2	MYBPC3	11	47365120	Silent	SNP	C	TCGA-2G-AAGX-01A-11D-A42Y-10	46272159	47365120	87641396	31	2837											
MRPL16	54948	mdanderson.org	37	chr11	59577352	59577352	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacttggtactgggagcaGtgtctttacgccagcactgg	12	9	1	0	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	MRPL16,NS,carcinoma,0,1	MRPL16	NM_017840	exon2	c.C97A	p.L33M	GGAGCAGTGTCTT		45	3	0.07	67	1	0.0149253731		0	1	109	0	0				T	59577352	G	T	59577352	3	4	41	1	0	0	0	0	1	0	0	0	9829	1020	36	3	670	3	MRPL16	11	59577352	Missense_Mutation	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10	12212232	59577352	75429164	32	2838											
CAPN5	726	mdanderson.org	37	chr11	76831772	76831772	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcaggtggaggagaaccGccagtaccgcatgcacagcc	13	14	0	1	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_004055	exon10	c.G1304T	p.R435L	AGAACCGCCAGTA		32	3	0.09	45	0	0				20	0	0				T	76831772	G	T	76831772	3	4	41	1	0	0	0	0	1	0	0	0	2647	1087	38	1	1338	1	CAPN5	11	76831772	Missense_Mutation	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10	17254420	76831772	58174744	33	2839											
NFRKB	4798	mdanderson.org	37	chr11	129740083	129740083	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atacatccttaccctggatgCggaagttagtggctgtgagt	12	8	0	1	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_006165	exon22	c.G2912A	p.R971H	TGGATGCGGAAGT		77	4	0.05	145	0	0				14	0	0				T	129740083	C	T	129740083	3	4	41	1	0	0	0	0	1	0	0	0	10430	768	27	1	1078	1	NFRKB	11	129740083	Missense_Mutation	SNP	C	TCGA-2G-AAGX-01A-11D-A42Y-10	52908311	129740083	5266433	34	2840											
WNT5B	81029	mdanderson.org	37	chr12	1755104	1755104	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acgacagcgcggccgccatgCgcgtcacccgcaagggccgg	15	17	1	0	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	WNT5B_ENST00000397196,NS,carcinoma,-2,1	WNT5B_ENST00000397196	NM_030775	exon5	c.C766T	p.R256C	GCCATGCGCGTCA		55	3	0.05	29	0	0		-2	1	59	0	0				T	1755104	C	T	1755104	3	4	41	1	0	0	0	0	1	0	0	0	17451	768	27	1	780	1	WNT5B	12	1755104	Missense_Mutation	SNP	C	TCGA-2G-AAGX-01A-11D-A42Y-10		1755104	132096791	35	2841											
RAB21	23011	mdanderson.org	37	chr12	72148936	72148936	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcggccggcggcggcggcggCggggcggcggcggcgggccg	27	14	0	0	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_014999	exon1	c.C27G	p.G9G	CGGCGGCGGGGCG		16	2	0.13	10	0	0				2	0	0				G	72148936	C	G	72148936	2	3	41	1	0	0	0	0	0	0	0	1	12959	755	27	5		5	RAB21	12	72148936	Silent	SNP	C	TCGA-2G-AAGX-01A-11D-A42Y-10	70393832	72148936	61702959	36	2842											
MLXIP	22877	mdanderson.org	37	chr12	122612481	122612481	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttgtgacacccctggacgGctctgtggacgtagacgagc	13	12	1	2	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	MLXIP,NS,carcinoma,+1,1	MLXIP	NM_014938	exon3	c.G572A	p.G191D	TGGACGGCTCTGT		50	3	0.06	41	0	0		1	1	80	0	0				A	122612481	G	A	122612481	3	1	41	1	0	0	0	0	1	0	0	0	9683	1203	42	2	582	2	MLXIP	12	122612481	Missense_Mutation	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10	50463545	122612481	11239414	37	2843											
PABPC3	5042	bcgsc.ca	37	chr13	25671311	25671315	+	Frame_Shift_Del	DEL	TATGA	TATGA	-													acaatcactagtgcaaaggtTatgatggaaggtggtcgcag					novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	TATGA	TATGA					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	PABPC3	NM_030979	exon1	c.975_979del	p.325_327del	AAAGGTTATGATG		198	5	0.03	237	1	0.0042194093		129		17	0	0				-	25671315	TATGA	-	25671311	7	5	41	1	0	1	0	1	0	0	0	0	11411	1741	61	0	977	0	PABPC3	13	25671311	Frame_Shift_Del	DEL	TATGA	TCGA-2G-AAGX-01A-11D-A42Y-10		25671311	89498567	38	2844											
ATP11A	23250	ucsc.edu;bcgsc.ca	37	chr13	113508740	113508740	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aacacgcagctgctggagctGaccaccaagaggatcgagga	13	11	0	2	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	ATP11A	NM_032189	exon19	c.G2139T	p.L713L	GGAGCTGACCACC		34	4	0.12	54	0	0		225		29	0	0				T	113508740	G	T	113508740	2	4	41	1	0	0	0	0	0	0	0	1	1118	1277	45	3		3	ATP11A	13	113508740	Silent	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10	87837429	113508740	1661138	39	2845											
ACIN1	22985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr14	23530737	23530737	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtggtggctggaccgggGgtgggggtggggggtgcagg	27	5	0	0	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_014977	exon17	c.C3368A	p.P1123H	ACCGGGGGTGGGG		79	11	0.14	71	0	0				128	49	0.38				T	23530737	G	T	23530737	3	4	41	1	0	0	0	0	1	0	0	0	142	1232	43	3	669	3	ACIN1	14	23530737	Missense_Mutation	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10		23530737	83818803	40	2846											
TP53BP1	7158	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	43712824	43712833	+	Frame_Shift_Del	DEL	GTCTGGTGGA	GTCTGGTGGA	-													accagcacccacatctgttcGtctggtggagtctggcactc					novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	GTCTGGTGGA	GTCTGGTGGA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	TP53BP1	NM_001141980	exon21	c.4352_4361del	p.1451_1454del	CTGTTCGTCTGGT		54	11	0.2	55	0	0		157		66	0	0				-	43712833	GTCTGGTGGA	-	43712824	7	5	41	1	0	1	0	1	0	0	0	0	16443	1153	40	0	1605	0	TP53BP1	15	43712824	Frame_Shift_Del	DEL	GTCTGGTGGA	TCGA-2G-AAGX-01A-11D-A42Y-10		43712824	58818568	41	2847											
CILP	8483	mdanderson.org	37	chr15	65499312	65499312	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	acggtccccatagtagaagcGaatggcgtccagccgctcat	11	13	1	1	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	CILP,NS,carcinoma,+2,1	CILP	NM_003613	exon4	c.C232A	p.R78S	AGAAGCGAATGGC		72	4	0.06	76	0	0		2	1	2	0	0				T	65499312	G	T	65499312	3	4	41	1	0	0	0	0	1	0	0	0	3451	1058	37	1	3346	1	CILP	15	65499312	Missense_Mutation	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10	21786488	65499312	37032080	42	2848											
VASN	114990	broad.mit.edu	37	chr16	4432543	4432543	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctgcggggaggcccatacAcccccagccgtccactccaa	10	19	0	0	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	VASN	NM_138440	exon2	c.A1665C	p.T555T	CCATACACCCCCA		61	11	0.18	44	7	0.1590909091		21		84	1	0.01				C	4432543	A	C	4432543	2	2	41	1	0	0	0	0	0	0	0	1	17186	146	6	4		4	VASN	16	4432543	Silent	SNP	A	TCGA-2G-AAGX-01A-11D-A42Y-10		4432543	85922210	43	2849											
ANKS3	124401	mdanderson.org	37	chr16	4751543	4751543	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggcacagaaagcatgttcCtctgagggcgggaagacagg	15	8	1	3	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_133450	exon10	c.G1011T	p.E337D	ATGTTCCTCTGAG		31	3	0.1	36	0	0				37	0	0				A	4751543	C	A	4751543	3	1	41	1	0	0	0	0	1	0	0	0	684	695	24	3	991	3	ANKS3	16	4751543	Missense_Mutation	SNP	C	TCGA-2G-AAGX-01A-11D-A42Y-10	319000	4751543	85603210	44	2850											
INO80E	283899	bcgsc.ca	37	chr16	30016646	30016652	+	Frame_Shift_Del	DEL	TAAGATG	TAAGATG	-													ctgacccccctcccacccccTaagatgcccccccccacgat					novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	TAAGATG	TAAGATG					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	INO80E	NM_173618	exon7	c.618_624del	p.206_208del	ACCCCCTAAGATG		167	0	0	180	0	0		26		42	0	0				-	30016652	TAAGATG	-	30016646	7	5	41	1	0	1	0	1	0	0	0	0	7793	1509	53	0	644	0	INO80E	16	30016646	Frame_Shift_Del	DEL	TAAGATG	TCGA-2G-AAGX-01A-11D-A42Y-10	25265103	30016646	60338107	45	2851											
IRX6	79190	mdanderson.org	37	chr16	55362814	55362814	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccgattggagcgcagggaGtgcggcctggctgcgccccg	19	13	0	0	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_024335	exon5	c.G924T	p.E308D	CAGGGAGTGCGGC		50	3	0.06	37	0	0				2	0	0				T	55362814	G	T	55362814	3	4	41	1	0	0	0	0	1	0	0	0	7891	1020	36	3	942	3	IRX6	16	55362814	Missense_Mutation	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10	25346168	55362814	34991939	46	2852											
CNGB1	1258	mdanderson.org	37	chr16	57993941	57993941	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccgggcctgcagcttgggCcccatttcctgggggcgtcc	14	16	0	0	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_001135639	exon10	c.G612A	p.G204G	CTTGGGCCCCATT		35	3	0.09	33	0	0				0	0					T	57993941	C	T	57993941	2	4	41	1	0	0	0	0	0	0	0	1	3623	726	26	2		2	CNGB1	16	57993941	Silent	SNP	C	TCGA-2G-AAGX-01A-11D-A42Y-10	2631127	57993941	32360812	47	2853											
CDRT15	146822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	14139304	14139304	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tggaactcttcttcccagccTtcttttaatgctctccggca	6	14	4	0	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_001007530	exon3	c.A436C	p.R146R	CCAGCCTTCTTTT		398	64	0.16	322	0	0				1	0	0				G	14139304	T	G	14139304	2	3	41	1	0	0	0	0	0	0	0	1	3197	1608	56	4		4	CDRT15	17	14139304	Silent	SNP	T	TCGA-2G-AAGX-01A-11D-A42Y-10		14139304	67055906	48	2854											
FBN3	84467	broad.mit.edu	37	chr19	8183824	8183824	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcagctcatgcccagggggAcactggcacttgtagctccc	12	14	2	0	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	FBN3,rectum,carcinoma,0,1	FBN3	NM_032447	exon25	c.T3294C	p.C1098C	AGGGGGACACTGG		125	4	0.03	82	0	0		300	1	62	0	0				G	8183824	A	G	8183824	2	3	41	1	0	0	0	0	0	0	0	1	5736	273	10	4		4	FBN3	19	8183824	Silent	SNP	A	TCGA-2G-AAGX-01A-11D-A42Y-10		8183824	50945159	49	2855											
MAG	4099	broad.mit.edu	37	chr19	35791134	35791134	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gctctgtggggctgacagcaAccccccgccgctgctgacct	12	17	1	2	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	MAG	NM_080600	exon6	c.A797C	p.N266T	ACAGCAACCCCCC		17	4	0.24	18	4	0.2222222222		172		0	0					C	35791134	A	C	35791134	3	2	41	1	0	0	0	0	1	0	0	0	9207	43	2	4	811	4	MAG	19	35791134	Missense_Mutation	SNP	A	TCGA-2G-AAGX-01A-11D-A42Y-10	27607310	35791134	23337849	50	2856											
DMWD	1762	mdanderson.org	37	chr19	46287506	46287506	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgatatccatggcttcacaCcactgtgccactcggggagt	10	14	1	0	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_004943	exon5	c.G2020T	p.V674L	TTCACACCACTGT		16	3	0.19	29	0	0				45	0	0				A	46287506	C	A	46287506	3	1	41	1	0	0	0	0	1	0	0	0	4621	507	18	3	8	3	DMWD	19	46287506	Missense_Mutation	SNP	C	TCGA-2G-AAGX-01A-11D-A42Y-10	10496372	46287506	12841477	51	2857											
KLK14	43847	broad.mit.edu	37	chr19	51582886	51582886	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gttggggtgcgtcacctgacGaaccacgcgcagcacctgct	13	14	1	1	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	KLK14	NM_022046	exon5	c.C334A	p.R112S	CCTGACGAACCAC		67	3	0.04	47	0	0		49		1	0	0				T	51582886	G	T	51582886	3	4	41	1	0	0	0	0	1	0	0	0	8444	1058	37	1	481	1	KLK14	19	51582886	Missense_Mutation	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10	5295380	51582886	7546097	52	2858											
CSNK2A1	1457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	485847	485847	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	atttacctcggcctaattttCgaaccagctggtagtcatct	7	11	2	0	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_001895	exon3	c.G128A	p.R43Q	AATTTTCGAACCA		237	106	0.45	342	0	0				12	6	0.5				T	485847	C	T	485847	3	4	41	1	0	0	0	0	1	0	0	0	3982	884	31	1	1091	1	CSNK2A1	20	485847	Missense_Mutation	SNP	C	TCGA-2G-AAGX-01A-11D-A42Y-10		485847	62539673	53	2859											
TMX4	56255	broad.mit.edu	37	chr20	8000252	8000252	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agctgcgggccgcagcgcccAcccgccatgttgggcgccga	15	17	0	0	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	TMX4	NM_021156	exon1	c.T9G	p.G3G	GCGCCCACCCGCC		36	18	0.5	26	9	0.3461538462		39		1	0	0				C	8000252	A	C	8000252	2	2	41	1	0	0	0	0	0	0	0	1	16328	146	6	4		4	TMX4	20	8000252	Silent	SNP	A	TCGA-2G-AAGX-01A-11D-A42Y-10	7514405	8000252	55025268	54	2860											
ZNRF3	84133	mdanderson.org	37	chr22	29446361	29446361	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgccggagcagctggcagcaGcaccttgttcctggggcccc	14	16	0	0	novel		TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	.	.	NM_001206998	exon8	c.G2192A	p.S731N	GCAGCAGCACCTT		24	2	0.08	18	0	0				24	0	0				A	29446361	G	A	29446361	3	1	41	1	0	0	0	0	1	0	0	0	18254	971	34	2	1918	2	ZNRF3	22	29446361	Missense_Mutation	SNP	G	TCGA-2G-AAGX-01A-11D-A42Y-10		29446361	21858205	55	2861											
NEFH	4744	hgsc.bcm.edu	37	chr22	29885638	29885638	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagaaggccaagtccccagTgaaggcagaagcaaagtccc	12	11	0	3	rs190692435	bycluster	TCGA-2G-AAGX-01A-11D-A42Y-10	TCGA-2G-AAGX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ee49b449-611e-4175-a114-1034657b6be6	e937a8a8-262b-4b40-8505-ac1c9162f5e4	NEFH,NS,lymphoid_neoplasm,0,1	NEFH	NM_021076	exon4	c.T2009A	p.V670E	CCCCAGTGAAGGC		231	11	0.05	185	2	0.0108108108		0	1	80	3	0.04				A	29885638	T	A	29885638	3	1	41	1	0	0	0	0	1	0	0	0	10360	1696	59	5	2023	5	NEFH	22	29885638	Missense_Mutation	SNP	T	TCGA-2G-AAGX-01A-11D-A42Y-10	439277	29885638	21418928	56	2862											
PLEKHN1	84069	bcgsc.ca	37	chr1	909421	909421	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggccgcagcccccagacgCccctcagcttgtgagtagca	13	16	1	2	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	PLEKHN1	NM_032129	exon14	c.C1643A	p.A548D	CAGACGCCCCTCA		24	0	0	25	0	0		49		1	0	0				A	909421	C	A	909421	3	1	42	1	0	0	0	0	1	0	0	0	12130	739	26	2	1733	2	PLEKHN1	1	909421	Missense_Mutation	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10		909421	248341200	1	2863											
KIF17	57576	mdanderson.org	37	chr1	21044035	21044035	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtccacgtggtaggcgccGtcgaaggtgaactgcttggg	17	9	0	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_020816	exon1	c.C165T	p.D55D	GGCGCCGTCGAAG		46	4	0.09	77	0	0				1	0	0				A	21044035	G	A	21044035	2	1	42	1	0	0	0	0	0	0	0	1	8320	1136	40	1		1	KIF17	1	21044035	Silent	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	20134614	21044035	228206586	2	2864											
CELA3B	23436	mdanderson.org	37	chr1	22307358	22307358	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcggaagcttctaccacacCtgtggcggtagcctcatcgc	11	14	2	0	rs7528300	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_007352	exon3	c.C171T	p.T57T	CCACACCTGTGGC		84	3	0.04	85	0	0				0	0					T	22307358	C	T	22307358	2	4	42	1	0	0	0	0	0	0	0	1	3236	668	24	3		3	CELA3B	1	22307358	Silent	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10	1263323	22307358	226943263	3	2865											
ILDR2	387597	mdanderson.org	37	chr1	166890129	166890129	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgccgggcggcgaccaagCgtagtaggaggcgctgcgcg	20	11	0	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_199351	exon9	c.G1699A	p.A567T	ACCAAGCGTAGTA		12	2	0.17	20	0	0				5	0	0				T	166890129	C	T	166890129	3	4	42	1	0	0	0	0	1	0	0	0	7753	768	27	1	228	1	ILDR2	1	166890129	Missense_Mutation	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10	144582771	166890129	82360492	4	2866											
SELP	6403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr1	169581527	169581527	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacttccggtccaactaatgCaaatccctcttcacaactga	4	15	2	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_003005	exon6	c.G889A	p.A297T	CTAATGCAAATCC		161	28	0.17	131	0	0				9	0	0				T	169581527	C	T	169581527	3	4	42	1	0	0	0	0	1	0	0	0	14072	710	25	2	1647	2	SELP	1	169581527	Missense_Mutation	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10	2691398	169581527	79669094	5	2867											
TNR	7143	broad.mit.edu	37	chr1	175372735	175372735	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtggccactgcagtgagGgatatagtccagttgtcctg	14	10	0	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	TNR	NM_003285	exon4	c.C517A	p.P173T	AGTGAGGGATATA		135	3	0.02	90	2	0.0222222222		399		1	0	0				T	175372735	G	T	175372735	3	4	42	1	0	0	0	0	1	0	0	0	16397	1232	43	3	3639	3	TNR	1	175372735	Missense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	5791208	175372735	73877886	6	2868											
TOR1AIP2	163590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr1	179820097	179820097	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcctgagatgctccagttcCgtcactcgcttccttaggga	9	13	1	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001199260	exon5	c.G436A	p.G146R	CAGTTCCGTCACT		177	38	0.21	152	0	0				26	3	0.12				T	179820097	C	T	179820097	3	4	42	1	0	0	0	0	1	0	0	0	16433	661	23	1	988	1	TOR1AIP2	1	179820097	Missense_Mutation	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10	4447362	179820097	69430524	7	2869											
CACNA1S	779	ucsc.edu	37	chr1	201035437	201035437	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcttcaccacggagatggCactggacctggggggcggca	16	11	2	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	CACNA1S	NM_000069	exon21	c.G2665A	p.A889T	AGATGGCACTGGA		39	4	0.1	17	0	0		249		9	0	0				T	201035437	C	T	201035437	3	4	42	1	0	0	0	0	1	0	0	0	2565	710	25	2	3052	2	CACNA1S	1	201035437	Missense_Mutation	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10	21215340	201035437	48215184	8	2870											
AVPR1B	553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr1	206224555	206224555	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agctggccaaggtggagatcGgagtcctggccactgtcctg	15	11	0	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_000707	exon1	c.G115A	p.G39R	GAGATCGGAGTCC		182	42	0.23	157	0	0				1	1	1				A	206224555	G	A	206224555	3	1	42	1	0	0	0	0	1	0	0	0	1230	1117	39	1	117	1	AVPR1B	1	206224555	Missense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	5189118	206224555	43026066	9	2871											
PIGR	5284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	207110937	207110937	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctgtatagttgggatttAcataaccactggagtcgatg	10	7	0	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_002644	exon4	c.T548G	p.V183G	GGATTTACATAAC		148	21	0.14	132	0	0				84	22	0.26				C	207110937	A	C	207110937	3	2	42	1	0	0	0	0	1	0	0	0	11944	391	14	4	1778	4	PIGR	1	207110937	Missense_Mutation	SNP	A	TCGA-2G-AAGY-01A-11D-A42Y-10	886382	207110937	42139684	10	2872											
CCDC85A	114800	mdanderson.org	37	chr2	56411850	56411850	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcgtccgcggccccgcccGcgccggtggaggacctgtcc	15	19	0	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001080433	exon1	c.G91T	p.A31S	CCGCCCGCGCCGG		25	2	0.08	29	0	0				3	0	0				T	56411850	G	T	56411850	3	4	42	1	0	0	0	0	1	0	0	0	2879	1087	38	1	93	1	CCDC85A	2	56411850	Missense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10		56411850	186787523	11	2873											
MAT2A	4144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr2	85769043	85769043	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctaaatgccaaactggcagAactacgccgtaatggcactt	9	11	0	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_005911	exon5	c.A497G	p.E166G	TGGCAGAACTACG		100	26	0.26	88	0	0				514	156	0.3				G	85769043	A	G	85769043	3	3	42	1	0	0	0	0	1	0	0	0	9379	246	9	4	515	4	MAT2A	2	85769043	Missense_Mutation	SNP	A	TCGA-2G-AAGY-01A-11D-A42Y-10	29357193	85769043	157430330	12	2874											
TTN	7273	broad.mit.edu	37	chr2	179473629	179473629	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caaagttgattggtggtcccGgtgtatctaatatttcagaa	10	6	2	2	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	TTN_ENST00000359218,NS,carcinoma,+1,10	TTN	NM_001267550	exon274	c.C52109T	p.P17370L	GGTCCCGGTGTAT		63	3	0.05	45	0	0		18412	10	0	0					A	179473629	G	A	179473629	3	1	42	1	0	0	0	0	1	0	0	0	16796	1116	39	1	55940	1	TTN	2	179473629	Missense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	93704586	179473629	63725744	13	2875											
INO80D	54891	broad.mit.edu	37	chr2	206869700	206869700	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actatcataatggcttccatGgggtgaggagtgtgagtgat	14	5	1	3	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	INO80D	NM_017759	exon11	c.C2476A	p.H826N	TTCCATGGGGTGA		122	3	0.02	146	0	0		134		5	0	0				T	206869700	G	T	206869700	3	4	42	1	0	0	0	0	1	0	0	0	7792	1348	47	3	611	3	INO80D	2	206869700	Missense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	27396071	206869700	36329673	14	2876											
DYTN	391475	mdanderson.org	37	chr2	207559536	207559536	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagacttctgatgggacttgCtgtgaagaccagataagaaa	12	6	1	6	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001093730	exon8	c.G785A	p.S262N	GACTTGCTGTGAA		52	3	0.06	70	0	0				0	0					T	207559536	C	T	207559536	3	4	42	1	0	0	0	0	1	0	0	0	4887	797	28	2	971	2	DYTN	2	207559536	Missense_Mutation	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10	689836	207559536	35639837	15	2877											
COL6A3	1293	bcgsc.ca	37	chr2	238253730	238253730	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgatgctttggatgaggGcacattgctttaaaagaaaa	10	5	0	3	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	COL6A3	NM_004369	exon34	c.C7133A	p.A2378D	ATGAGGGCACATT		151	0	0	164	1	0.006097561		608		1067	1	0				T	238253730	G	T	238253730	3	4	42	1	0	0	0	0	1	0	0	0	3724	1203	42	2	2444	2	COL6A3	2	238253730	Missense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	30694194	238253730	4945643	16	2878											
NUP210	23225	mdanderson.org	37	chr3	13373825	13373825	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agctttatatatgagttgggCgacattaatatttgttctgc	9	5	1	1	rs147322542		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_024923	exon29	c.G3903A	p.S1301S	GTTGGGCGACATT		53	3	0.06	69	0	0	0			147	0	0				T	13373825	C	T	13373825	2	4	42	1	0	0	0	0	0	0	0	1	10807	755	27	1		1	NUP210	3	13373825	Silent	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10		13373825	184648605	17	2879											
MRPS25	64432	bcgsc.ca	37	chr3	15094113	15094115	+	In_Frame_Del	DEL	CTC	CTC	-													gggtgagaaagctgctttttCtcctcctcctcttccctgag					novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	CTC	CTC					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	MRPS25	NM_022497	exon4	c.355_357del	p.119_119del	CTTTTTCTCCTCC		89	0	0	106	0	0		14		153	0	0				-	15094115	CTC	-	15094113	7	5	42	1	0	1	0	1	0	0	0	0	9884	912	32	0	168	0	MRPS25	3	15094113	In_Frame_Del	DEL	CTC	TCGA-2G-AAGY-01A-11D-A42Y-10	1720288	15094113	182928317	18	2880											
SCN11A	11280	broad.mit.edu	37	chr3	38991741	38991741	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtctggtctttagacttcTttttctccttttggatggca	8	9	4	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	SCN11A	NM_014139	exon1	c.A113G	p.K38R	GACTTCTTTTTCT		131	4	0.03	135	0	0		296		9	0	0				C	38991741	T	C	38991741	3	2	42	1	0	0	0	0	1	0	0	0	13966	1609	56	4	5366	4	SCN11A	3	38991741	Missense_Mutation	SNP	T	TCGA-2G-AAGY-01A-11D-A42Y-10	23897628	38991741	159030689	19	2881											
MAML3	55534	broad.mit.edu	37	chr4	140640915	140640915	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcttggtcagtctcggctgCccagcttgaagagggtagct	14	10	2	2	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	MAML3	NM_018717	exon6	c.G2967A	p.G989G	CGGCTGCCCAGCT		49	3	0.06	72	0	0		192		29	0	0				T	140640915	C	T	140640915	2	4	42	1	0	0	0	0	0	0	0	1	9256	726	26	2		2	MAML3	4	140640915	Silent	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10		140640915	50513361	20	2882											
CLGN	1047	bcgsc.ca	37	chr4	141311836	141311836	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctttcttcttgcccttctatGatttcaatttcttcttcact	2	12	7	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	CLGN	NM_001130675	exon15	c.C1698A	p.I566I	TTCTATGATTTCA		152	0	0	186	0	0		76		168	0	0				T	141311836	G	T	141311836	2	4	42	1	0	0	0	0	0	0	0	1	3547	1280	45	3		3	CLGN	4	141311836	Silent	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	670921	141311836	49842440	21	2883											
ADCY2	108	bcgsc.ca	37	chr5	7743791	7743791	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcccggtagaacgtccgtcCtgggcatctcctttggggct	12	13	1	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	ADCY2	NM_020546	exon15	c.C1882T	p.L628L	TCCGTCCTGGGCA		126	0	0	201	0	0		337		13	0	0				T	7743791	C	T	7743791	2	4	42	1	0	0	0	0	0	0	0	1	293	680	24	3		3	ADCY2	5	7743791	Silent	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10		7743791	173171469	22	2884											
PCDHGA8	9708	hgsc.bcm.edu	37	chr5	140773214	140773214	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaatcaacggaaaagtggcAtacaaattccggaaaattaa	9	6	1	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	PCDHGA8,NS,carcinoma,0,1	PCDHGA8	NM_014004	exon1	c.A834T	p.A278A	AGTGGCATACAAA		100	4	0.04	145	0	0		0	1	2	0	0				T	140773214	A	T	140773214	2	4	42	1	0	0	0	0	0	0	0	1	11606	204	8	5		5	PCDHGA8	5	140773214	Silent	SNP	A	TCGA-2G-AAGY-01A-11D-A42Y-10	133029423	140773214	40142046	23	2885											
TNIP1	10318	mdanderson.org	37	chr5	150436453	150436453	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcggcacacacactcagCgtggtctccaggcgctgcag	11	16	2	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001252385	exon6	c.G501A	p.T167T	ACTCAGCGTGGTC		24	2	0.08	48	0	0				127	0	0				T	150436453	C	T	150436453	2	4	42	1	0	0	0	0	0	0	0	1	16373	755	27	1		1	TNIP1	5	150436453	Silent	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10	9663239	150436453	30478807	24	2886											
TBP	6908	hgsc.bcm.edu;mdanderson.org	37	chr6	170871016	170871016	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcaacaacaacaGcagcagcagcagcagcagca	10	14	0	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	TBP,NS,carcinoma,0,2	TBP	NM_003194	exon3	c.G192A	p.Q64Q	ACAACAGCAGCAG		86	6	0.07	80	1	0.0125		0	2	93	0	0				A	170871016	G	A	170871016	2	1	42	1	0	0	0	0	0	0	0	1	15703	962	34	2		2	TBP	6	170871016	Silent	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10		170871016	244051	25	2887											
SUMF2	25870	mdanderson.org	37	chr7	56146188	56146188	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctctgccaatcaccgggccCgggtcaccaccaggtaaggg	13	15	3	0	rs149838149	bycluster;by1000genomes	TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_015411	exon8	c.C865T	p.R289W	CGGGCCCGGGTCA		86	5	0.06	70	1	0.0142857143	0.001			300	10	0.03				T	56146188	C	T	56146188	3	4	42	1	0	0	0	0	1	0	0	0	15441	643	23	1	895	1	SUMF2	7	56146188	Missense_Mutation	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10		56146188	102992475	26	2888											
WBSCR17	64409	mdanderson.org	37	chr7	71177063	71177063	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtggagaaccggggcctgGctggcatcgacctcatcctc	14	13	1	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_022479	exon11	c.G1729T	p.A577S	GGCCTGGCTGGCA		70	4	0.06	67	0	0				29	0	0				T	71177063	G	T	71177063	3	4	42	1	0	0	0	0	1	0	0	0	17323	1203	42	2	1771	2	WBSCR17	7	71177063	Missense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	15030875	71177063	87961600	27	2889											
GTF2IRD1	9569	mdanderson.org	37	chr7	74005172	74005172	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtgaggccctgggcctgaAccggccggtgctggtccctt	16	13	0	2	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001199207	exon24	c.A2513G	p.N838S	GCCTGAACCGGCC		56	3	0.05	74	0	0				182	0	0				G	74005172	A	G	74005172	3	3	42	1	0	0	0	0	1	0	0	0	6908	43	2	4	2552	4	GTF2IRD1	7	74005172	Missense_Mutation	SNP	A	TCGA-2G-AAGY-01A-11D-A42Y-10	2828109	74005172	85133491	28	2890											
ADCK2	90956	broad.mit.edu	37	chr7	140373547	140373548	+	In_Frame_Ins	INS	-	-	ACCTCAGGCCCA													tgcttctgaaagccaccgagINSacctcaggcccaacctacat					novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	ADCK2	NM_052853	exon1	c.417_418insACCTCAGGCCCA	p.E139delinsETSGP	CACCGAGACCTCA		91	7	0.08	118	0	0		37		73	0	0				ACCTCAGGCCCA	140373548	-	ACCTCAGGCCCA	140373547	7	5	42	1	0	1	1	0	0	0	0	0	288	933	33	0	419	0	ADCK2	7	140373547	In_Frame_Ins	INS	-	TCGA-2G-AAGY-01A-11D-A42Y-10	66368375	140373547	18765116	29	2891											
ZNF398	0	broad.mit.edu	37	chr7	148876752	148876752	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cacaatggaggctgtgggggTgatagtgacccatcaggtca	15	8	2	2	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	ZNF398	NM_170686	exon6	c.T1788G	p.G596G	TGGGGGTGATAGT		59	12	0.2	68	9	0.1323529412		54		24	0	0				G	148876752	T	G	148876752	2	3	42	1	0	0	0	0	0	0	0	1	17941	1683	59	4		4	ZNF398	7	148876752	Silent	SNP	T	TCGA-2G-AAGY-01A-11D-A42Y-10	8503205	148876752	10261911	30	2892											
WNK2	65268	mdanderson.org	37	chr9	96055381	96055381	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttccattcccagtcgtcCtacatcagcagcgacaatga	6	15	1	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_006648	exon22	c.C5634A	p.S1878S	GTCGTCCTACATC		47	3	0.06	57	0	0				82	0	0				A	96055381	C	A	96055381	2	1	42	1	0	0	0	0	0	0	0	1	17437	668	24	3		3	WNK2	9	96055381	Silent	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10		96055381	45158050	31	2893											
DFNB31	25861	bcgsc.ca	37	chr9	117185777	117185777	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcttgcggggaaatggtGcctctcacctcagagaggag	15	9	3	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	DFNB31	NM_001173425	exon7	c.C1443A	p.G481G	AATGGTGCCTCTC		89	1	0.01	102	0	0		100		74	0	0				T	117185777	G	T	117185777	2	4	42	1	0	0	0	0	0	0	0	1	4483	1306	46	2		2	DFNB31	9	117185777	Silent	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	21130396	117185777	24027654	32	2894											
TOR2A	27433	mdanderson.org	37	chr9	130495633	130495633	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acctctgagaagtggcccccCcactgtgcccactgcaaagc	9	17	1	1	rs564754	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_130459	exon3	c.G624T	p.W208C	GCCCCCCCACTGT		97	3	0.03	118	0	0				19	0	0				A	130495633	C	A	130495633	3	1	42	1	0	0	0	0	1	0	0	0	16435	624	22	3	522	3	TOR2A	9	130495633	Missense_Mutation	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10	13309856	130495633	10717798	33	2895											
SEC16A	9919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr9	139370740	139370740	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggcacccctgtgctcgctGtgtcaccccacacatcacca	7	20	2	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_014866	exon3	c.C1328A	p.T443K	CTCGCTGTGTCAC		128	74	0.58	137	0	0				95	56	0.59				T	139370740	G	T	139370740	3	4	42	1	0	0	0	0	1	0	0	0	14039	1377	48	3	5865	3	SEC16A	9	139370740	Missense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	8875107	139370740	1842691	34	2896											
MAMDC4	158056	mdanderson.org	37	chr9	139752857	139752857	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acccatgtcctgcaggttccTgtgattttgagtctggcctg	11	11	1	2	rs374940023	alternate_allele	TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_206920	exon22	c.T2680G	p.C894G	GGTTCCTGTGATT		17	2	0.12	16	0	0				28	0	0				G	139752857	T	G	139752857	3	3	42	1	0	0	0	0	1	0	0	0	9253	1580	55	4	2766	4	MAMDC4	9	139752857	Missense_Mutation	SNP	T	TCGA-2G-AAGY-01A-11D-A42Y-10	382117	139752857	1460574	35	2897											
DIP2C	22982	bcgsc.ca	37	chr10	415572	415572	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggttactgtcatccgtggGcctgtaatgacagtttttaa	10	8	1	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	DIP2C	NM_014974	exon18	c.C1993A	p.P665T	CCGTGGGCCTGTA		79	1	0.01	65	0	0		195		38	0	0				T	415572	G	T	415572	3	4	42	1	0	0	0	0	1	0	0	0	4557	1217	42	2	2757	2	DIP2C	10	415572	Missense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10		415572	135119175	36	2898											
C10orf54	64115	mdanderson.org	37	chr10	73511467	73511467	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccggggcctggaggagacaGgggggtgctgggctccgaaa	20	9	0	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_022153	exon6	c.C856T	p.L286L	GAGACAGGGGGGT		43	3	0.07	50	0	0				152	0	0				A	73511467	G	A	73511467	2	1	42	1	0	0	0	0	0	0	0	1	1611	991	35	3		3	C10orf54	10	73511467	Silent	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	73095895	73511467	62023280	37	2899											
DUSP13	51207	mdanderson.org	37	chr10	76863743	76863743	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagggccgaccccacgctggGcttccaccatcttctgtgtg	11	15	2	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	DUSP13_ENST00000394707,NS,carcinoma,-1,1	DUSP13_ENST00000394707	NM_001007273	exon2	c.C92A	p.A31D	CGCTGGGCTTCCA		41	4	0.1	69	0	0		-1	1	2	0	0				T	76863743	G	T	76863743	3	4	42	1	0	0	0	0	1	0	0	0	4839	1203	42	2	803	2	DUSP13	10	76863743	Missense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	3352276	76863743	58671004	38	2900											
DLG5	9231	mdanderson.org	37	chr10	79581552	79581552	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cacggtccccagaggcatctGagcggaaggagctcaggcta	14	12	2	2	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_004747	exon15	c.C2690A	p.S897X	GCATCTGAGCGGA		17	2	0.12	32	0	0				106	0	0				T	79581552	G	T	79581552	4	4	42	1	0	0	0	0	0	1	0	0	4586	1294	45	3	3141	3	DLG5	10	79581552	Nonsense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	2717809	79581552	55953195	39	2901											
IDE	3416	mdanderson.org	37	chr10	94214294	94214294	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcatgttctgaatcacttcAggctgcaaagaaaaaagttt	8	7	4	2	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_004969	exon25	c.T2967C	p.P989P	CACTTCAGGCTGC		46	3	0.07	82	0	0				51	0	0				G	94214294	A	G	94214294	2	3	42	1	0	0	0	0	0	0	0	1	7536	175	7	4		4	IDE	10	94214294	Silent	SNP	A	TCGA-2G-AAGY-01A-11D-A42Y-10	14632742	94214294	41320453	40	2902											
VWA2	340706	bcgsc.ca	37	chr10	116044682	116044682	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttccagaaggactggacgGctaccagtgcctctgcccgc	12	14	1	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	VWA2	NM_001272046	exon10	c.G950A	p.G317D	TGGACGGCTACCA		32	0	0	59	0	0		64		3	0	0				A	116044682	G	A	116044682	3	1	42	1	0	0	0	0	1	0	0	0	17298	1203	42	2	984	2	VWA2	10	116044682	Missense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	21830388	116044682	19490065	41	2903											
C10orf88	80007	mdanderson.org	37	chr10	124713659	124713659	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaggccagcgtggggcgGcgggtgaggcccccgtcctc	19	13	0	2	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	C10orf88,colon,carcinoma,-1,1	C10orf88	NM_024942	exon1	c.C36A	p.R12R	GGGGCGGCGGGTG		29	3	0.1	21	0	0		-1	1	23	0	0				T	124713659	G	T	124713659	2	4	42	1	0	0	0	0	0	0	0	1	1626	1190	42	2		2	C10orf88	10	124713659	Silent	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	8668977	124713659	10821088	42	2904											
INSC	387755	mdanderson.org	37	chr11	15212344	15212344	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggagggggctcccttgtGccgcatcatagccaaggtga	14	12	1	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001031853	exon6	c.G818T	p.C273F	CCTTGTGCCGCAT		44	3	0.07	99	0	0				9	0	0				T	15212344	G	T	15212344	3	4	42	1	0	0	0	0	1	0	0	0	7807	1319	46	2	840	2	INSC	11	15212344	Missense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10		15212344	119794172	43	2905											
MACROD1	28992	mdanderson.org	37	chr11	63918712	63918712	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcaggccagccactcaccGgcgttgacgatggcgtccac	12	15	2	1	rs374513283		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_014067	exon3	c.C516T	p.A172A	CTCACCGGCGTTG		24	2	0.08	36	0	0				24	0	0				A	63918712	G	A	63918712	2	1	42	1	0	0	0	0	0	0	0	1	9190	1130	39	1		1	MACROD1	11	63918712	Silent	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	48706368	63918712	71087804	44	2906											
KRTAP5-8	57830	bcgsc.ca	37	chr11	71249545	71249545	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgttcccagtccagctgCtgtaagccctgctgctgctc	10	15	0	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	KRTAP5-8,NS,carcinoma,0,1	KRTAP5-8	NM_021046	exon1	c.C444T	p.C148C	CAGCTGCTGTAAG		29	1	0.03	54	0	0		28	1	0	0					T	71249545	C	T	71249545	2	4	42	1	0	0	0	0	0	0	0	1	8605	805	28	2		2	KRTAP5-8	11	71249545	Silent	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10	7330833	71249545	63756971	45	2907											
SLC38A1	81539	bcgsc.ca	37	chr12	46622952	46622952	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacagaaaaagtaggattcCagtgtttgccagggcaaagg	12	7	1	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	SLC38A1	NM_030674	exon5	c.G298A	p.G100R	GGATTCCAGTGTT		123	0	0	144	0	0		58		44	0	0				T	46622952	C	T	46622952	3	4	42	1	0	0	0	0	1	0	0	0	14655	603	21	3	1217	3	SLC38A1	12	46622952	Missense_Mutation	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10		46622952	87228943	46	2908											
RAPGEF3	10411	mdanderson.org	37	chr12	48141596	48141596	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgcctcttgttgcagaCgtaggtgctgcgctcctgct	12	13	1	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	RAPGEF3,colon,carcinoma,0,1	RAPGEF3	NM_001098531	exon14	c.G1372A	p.V458I	TGCAGACGTAGGT		22	3	0.14	30	0	0		0	1	27	0	0				T	48141596	C	T	48141596	3	4	42	1	0	0	0	0	1	0	0	0	13096	536	19	1	1459	1	RAPGEF3	12	48141596	Missense_Mutation	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10	1518644	48141596	85710299	47	2909											
HNRNPA1	3178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr12	54677642	54677642	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacaatgattttgggaattaCaacaatcagtcttcaaattt	5	6	3	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_031157	exon9	c.C954T	p.Y318Y	GAATTACAACAAT		68	12	0.18	56	0	0				6650	1575	0.24				T	54677642	C	T	54677642	2	4	42	1	0	0	0	0	0	0	0	1	7297	489	17	3		3	HNRNPA1	12	54677642	Silent	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10	6536046	54677642	79174253	48	2910											
RHOF	54509	broad.mit.edu	37	chr12	122231059	122231059	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgcgcaggcgcactcaccGgccgtgtcgtagaggttcag	16	13	2	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	RHOF	NM_019034	exon2	c.C225A	p.A75A	CTCACCGGCCGTG		68	3	0.04	83	0	0		6		35	0	0				T	122231059	G	T	122231059	5	4	42	1	0	0	0	0	0	0	1	0	13387	1130	39	1	426	1	RHOF	12	122231059	Splice_Site	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	67553417	122231059	11620836	49	2911											
MAB21L1	4081	ucsc.edu;mdanderson.org	37	chr13	36049616	36049616	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctccgccgagctctgcttGccggccaaggagtggcactc	12	16	2	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	MAB21L1	NM_005584	exon1	c.C660A	p.G220G	CTGCTTGCCGGCC		41	4	0.1	50	0	0		52		139	0	0				T	36049616	G	T	36049616	2	4	42	1	0	0	0	0	0	0	0	1	9186	1306	46	2		2	MAB21L1	13	36049616	Silent	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10		36049616	79120262	50	2912											
SLC8A3	6547	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr14	70633871	70633871	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tacatggtctttgacatgtcTccccctttcctcaccactgt	5	15	3	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_183002	exon2	c.A1269G	p.G423G	CATGTCTCCCCCT		78	5	0.06	103	0	0				16	0	0				C	70633871	T	C	70633871	2	2	42	1	0	0	0	0	0	0	0	1	14762	1538	54	4		4	SLC8A3	14	70633871	Silent	SNP	T	TCGA-2G-AAGY-01A-11D-A42Y-10		70633871	36715669	51	2913											
PTPN21	11099	mdanderson.org	37	chr14	88945534	88945534	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcccggcgagcaggacgcgAgggcagccaggtgggtcctg	20	12	0	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_007039	exon13	c.T2241C	p.P747P	GACGCGAGGGCAG		43	3	0.07	47	1	0.0212765957				9	0	0				G	88945534	A	G	88945534	2	3	42	1	0	0	0	0	0	0	0	1	12837	291	11	4		4	PTPN21	14	88945534	Silent	SNP	A	TCGA-2G-AAGY-01A-11D-A42Y-10	18311663	88945534	18404006	52	2914											
FAM181A	90050	broad.mit.edu	37	chr14	94394839	94394839	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgagccctacctgaaaAgggggtctgaggaccggccc	14	13	1	3	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	FAM181A	NM_138344	exon3	c.A394G	p.R132G	CTGAAAAGGGGGT		57	4	0.07	59	0	0		42		10	0	0				G	94394839	A	G	94394839	3	3	42	1	0	0	0	0	1	0	0	0	5538	63	3	4	400	4	FAM181A	14	94394839	Missense_Mutation	SNP	A	TCGA-2G-AAGY-01A-11D-A42Y-10	5449305	94394839	12954701	53	2915											
SPINT1	6692	broad.mit.edu	37	chr15	41149071	41149071	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccagagaaaggacttccaCggacaccaccaccacccacc	6	18	0	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	SPINT1	NM_181642	exon11	c.C1488A	p.H496Q	CTTCCACGGACAC		120	3	0.03	116	0	0		28		213	0	0				A	41149071	C	A	41149071	3	1	42	1	0	0	0	0	1	0	0	0	15123	535	19	1	1526	1	SPINT1	15	41149071	Missense_Mutation	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10		41149071	61382321	54	2916											
SPTBN5	51332	mdanderson.org	37	chr15	42175409	42175409	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagctgctgcccacaggcGgtggacctggccggctcctg	15	16	0	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_016642	exon9	c.C1572T	p.T524T	ACAGGCGGTGGAC		50	3	0.06	71	0	0				1	0	0				A	42175409	G	A	42175409	2	1	42	1	0	0	0	0	0	0	0	1	15177	1103	39	1		1	SPTBN5	15	42175409	Silent	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	1026338	42175409	60355983	55	2917											
ODF3L1	161753	mdanderson.org	37	chr15	76019748	76019748	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcgcctaccctctggaccTcacgccacggcctggccccg	9	21	2	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_175881	exon4	c.T692C	p.L231P	TGGACCTCACGCC		52	3	0.06	75	0	0				4	0	0				C	76019748	T	C	76019748	3	2	42	1	0	0	0	0	1	0	0	0	10878	1551	54	4	706	4	ODF3L1	15	76019748	Missense_Mutation	SNP	T	TCGA-2G-AAGY-01A-11D-A42Y-10	33844339	76019748	26511644	56	2918											
AKAP13	11214	bcgsc.ca	37	chr15	86118561	86118561	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acatccaacagcaactaatgGtaagtcagaaagcttttatt	6	8	1	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	AKAP13	NM_006738	exon6	c.861+1G>T	.	CTAATGGTAAGTC		115	0	0	116	0	0		394		0	0					T	86118561	G	T	86118561	5	4	42	1	0	0	0	0	0	0	1	0	446	1275	44	3	880	3	AKAP13	15	86118561	Splice_Site	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	10098813	86118561	16412831	57	2919											
ZNF174	7727	bcgsc.ca	37	chr16	3458752	3458752	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtccacacaggagagagaCcctacacgtgcggagagtgt	14	10	0	3	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	ZNF174	NM_003450	exon3	c.C1057A	p.P353T	GAGAGACCCTACA		112	0	0	142	0	0		32		66	0	0				A	3458752	C	A	3458752	3	1	42	1	0	0	0	0	1	0	0	0	17801	507	18	3	1151	3	ZNF174	16	3458752	Missense_Mutation	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10		3458752	86896001	58	2920											
CORO1A	11151	mdanderson.org	37	chr16	30198177	30198177	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcctgatgctgcccctgcGggagcccgtcgtcaccctgg	15	16	1	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001193333	exon5	c.G362T	p.R121L	CCCTGCGGGAGCC		37	3	0.08	54	0	0				171	0	0				T	30198177	G	T	30198177	3	4	42	1	0	0	0	0	1	0	0	0	3776	1116	39	1	372	1	CORO1A	16	30198177	Missense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	26739425	30198177	60156576	59	2921											
SETD1A	9739	broad.mit.edu;mdanderson.org	37	chr16	30992480	30992480	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacgagatggtcatcgaataCgtgggtcagaacatccgtca	12	9	3	2	rs377613466		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	SETD1A	NM_014712	exon17	c.C4791T	p.Y1597Y	CGAATACGTGGGT		86	5	0.06	72	0	0		143		188	1	0.01				T	30992480	C	T	30992480	2	4	42	1	0	0	0	0	0	0	0	1	14183	547	19	1		1	SETD1A	16	30992480	Silent	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10	794303	30992480	59362273	60	2922											
RLTPR	146206	mdanderson.org	37	chr16	67683467	67683467	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atatcagcggcaacgccatgGgggacgcgggcgccaagttg	16	11	1	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001013838	exon20	c.G1864A	p.G622R	GCCATGGGGGACG		9	2	0.22	18	0	0				7	0	0				A	67683467	G	A	67683467	3	1	42	1	0	0	0	0	1	0	0	0	13445	1232	43	3	1942	3	RLTPR	16	67683467	Missense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	36690987	67683467	22671286	61	2923											
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr16	70913326	70913326	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	agaactggccgcacaaccgtCactcgagggaggttcccctc	11	15	1	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001270974	exon62	c.G10431C	p.V3477V	AACCGTCACTCGA		63	19	0.3	81	0	0				12	2	0.17				G	70913326	C	G	70913326	2	3	42	1	0	0	0	0	0	0	0	1	7510	813	29	5		5	HYDIN	16	70913326	Silent	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10	3229859	70913326	19441427	62	2924											
RHBDL3	162494	broad.mit.edu	37	chr17	30615824	30615824	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcacagatgagcaacaagcGttccaacagcttccgccaag	9	13	0	2	rs140645420	alternate_allele	TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	RHBDL3	NM_138328	exon4	c.G308T	p.R103L	ACAAGCGTTCCAA		209	4	0.02	175	1	0.0057142857		49		21	0	0				T	30615824	G	T	30615824	3	4	42	1	0	0	0	0	1	0	0	0	13372	1145	40	1	322	1	RHBDL3	17	30615824	Missense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10		30615824	50579386	63	2925											
TMEM132E	124842	mdanderson.org	37	chr17	32964258	32964258	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acagccccactctccctctaCagcccacgagactatggact	6	18	2	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_207313	exon10	c.C1962T	p.Y654Y	CCTCTACAGCCCA		64	4	0.06	105	0	0				6	0	0				T	32964258	C	T	32964258	2	4	42	1	0	0	0	0	0	0	0	1	16107	489	17	3		3	TMEM132E	17	32964258	Silent	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10	2348434	32964258	48230952	64	2926											
ERBB2	2064	broad.mit.edu	37	chr17	37868702	37868702	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccggagagctttgatggGtaagagtgggcacgatgacc	16	8	0	4	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	ERBB2	NM_001005862	exon12	c.1058+1G>T	.	TGATGGGTAAGAG		128	4	0.03	135	0	0		429		9	0	0				T	37868702	G	T	37868702	5	4	42	1	0	0	0	0	0	0	1	0	5234	1275	44	3	1183	3	ERBB2	17	37868702	Splice_Site	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	4904444	37868702	43326508	65	2927											
MKNK2	2872	mdanderson.org	37	chr19	2043519	2043519	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctgtgtccctggcactgGtacagcatctccacctccct	7	17	1	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_017572	exon6	c.C402A	p.Y134X	GCACTGGTACAGC		53	3	0.06	82	0	0				152	0	0				T	2043519	G	T	2043519	4	4	42	1	0	0	0	0	0	1	0	0	9652	1256	44	3	1126	3	MKNK2	19	2043519	Nonsense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10		2043519	57085464	66	2928											
VAV1	7409	mdanderson.org	37	chr19	6833570	6833570	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	atcagggctaccgctgccatCggtgccgggcatctgcacac	12	15	2	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_005428	exon17	c.C1642T	p.R548W	TGCCATCGGTGCC		56	3	0.05	94	0	0				23	0	0				T	6833570	C	T	6833570	3	4	42	1	0	0	0	0	1	0	0	0	17190	875	31	1	1708	1	VAV1	19	6833570	Missense_Mutation	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10	4790051	6833570	52295413	67	2929											
BRD4	23476	mdanderson.org	37	chr19	15353857	15353857	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggtggcgggggctgttggAtgtgggtggaaaactgcatg	22	4	0	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_058243	exon14	c.T3023C	p.I1008T	TGTTGGATGTGGG		24	3	0.13	29	1	0.0344827586				14	0	0				G	15353857	A	G	15353857	3	3	42	1	0	0	0	0	1	0	0	0	1506	333	12	4	1093	4	BRD4	19	15353857	Missense_Mutation	SNP	A	TCGA-2G-AAGY-01A-11D-A42Y-10	8520287	15353857	43775126	68	2930											
FBXO17	115290	mdanderson.org	37	chr19	39435736	39435736	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcagccgcagttctctcgaGcgccccacctgccaggcagc	11	19	1	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_148169	exon5	c.C593A	p.A198D	TCTCGAGCGCCCC		36	3	0.08	87	0	0				161	0	0				T	39435736	G	T	39435736	3	4	42	1	0	0	0	0	1	0	0	0	5762	971	34	2	278	2	FBXO17	19	39435736	Missense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	24081879	39435736	19693247	69	2931											
ELSPBP1	64100	mdanderson.org	37	chr19	48517554	48517554	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caacggccagtggaagtactGccagagtgaaggtgagtggt	16	7	0	3	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	ELSPBP1,brain,glioma,+1,1	ELSPBP1	NM_022142	exon3	c.G197T	p.C66F	AGTACTGCCAGAG		71	4	0.06	97	0	0		1	1	0	0					T	48517554	G	T	48517554	3	4	42	1	0	0	0	0	1	0	0	0	5111	1319	46	2	203	2	ELSPBP1	19	48517554	Missense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	9081818	48517554	10611429	70	2932											
RPL18	6141	mdanderson.org	37	chr19	49119198	49119198	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gtacacctctcggcccttgcGaggacctagggaaggggaag	15	11	1	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_000979	exon6	c.C427A	p.R143S	CCTTGCGAGGACC		32	3	0.09	60	0	0				3704	1	0				T	49119198	G	T	49119198	3	4	42	1	0	0	0	0	1	0	0	0	13615	1058	37	1	147	1	RPL18	19	49119198	Missense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	601644	49119198	10009785	71	2933											
HRC	3270	mdanderson.org	37	chr19	49656771	49656771	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcatcttcctccagccccTcctcctcctcctcttcctcc	2	24	3	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_002152	exon1	c.A1724G	p.E575G	AGCCCCTCCTCCT		42	3	0.07	63	0	0				15	0	0				C	49656771	T	C	49656771	3	2	42	1	0	0	0	0	1	0	0	0	7392	1551	54	4	399	4	HRC	19	49656771	Missense_Mutation	SNP	T	TCGA-2G-AAGY-01A-11D-A42Y-10	537573	49656771	9472212	72	2934											
PRR12	57479	mdanderson.org	37	chr19	50100336	50100336	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccgcaggcgcctaccgcaGccccagcccgcaaggcacca	10	21	0	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_020719	exon4	c.G2744T	p.S915I	ACCGCAGCCCCAG		41	3	0.07	98	0	0				96	0	0				T	50100336	G	T	50100336	3	4	42	1	0	0	0	0	1	0	0	0	12635	971	34	2	2758	2	PRR12	19	50100336	Missense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	443565	50100336	9028647	73	2935											
SIGLEC8	27181	mdanderson.org	37	chr19	51958842	51958842	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaggctcccccgggtccagCtcagcctggcagggggattg	15	14	2	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	SIGLEC8,NS,carcinoma,+1,1	SIGLEC8	NM_014442	exon4	c.G881A	p.S294N	GTCCAGCTCAGCC		45	3	0.07	91	0	0		1	1	5	0	0				T	51958842	C	T	51958842	3	4	42	1	0	0	0	0	1	0	0	0	14368	797	28	2	634	2	SIGLEC8	19	51958842	Missense_Mutation	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10	1858506	51958842	7170141	74	2936											
PRPF31	26121	mdanderson.org	37	chr19	54629912	54629912	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgttgctccaggatctgcggCggaaagcggcccggctggtg	17	12	1	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_015629	exon9	c.C865T	p.R289W	CTGCGGCGGAAAG		66	5	0.08	84	0	0				201	0	0				T	54629912	C	T	54629912	3	4	42	1	0	0	0	0	1	0	0	0	12617	759	27	1	895	1	PRPF31	19	54629912	Missense_Mutation	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10	2671070	54629912	4499071	75	2937											
EPN1	29924	mdanderson.org	37	chr19	56196955	56196955	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcgacgaggaccggctgcGggaagagcgggcgcacgcgc	20	13	0	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001130071	exon4	c.G755T	p.R252L	GGCTGCGGGAAGA		31	3	0.1	37	0	0				388	0	0				T	56196955	G	T	56196955	3	4	42	1	0	0	0	0	1	0	0	0	5213	1116	39	1	769	1	EPN1	19	56196955	Missense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	1567043	56196955	2932028	76	2938											
NINL	22981	mdanderson.org	37	chr20	25457291	25457291	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtcctgggcttgcctgCggcgaggcccggctcctgcc	15	16	0	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	NINL,NS,carcinoma,-1,1	NINL	NM_025176	exon17	c.G2636A	p.R879H	TGCCTGCGGCGAG		22	3	0.14	27	1	0.037037037		-1	1	63	0	0				T	25457291	C	T	25457291	3	4	42	1	0	0	0	0	1	0	0	0	10466	768	27	1	1544	1	NINL	20	25457291	Missense_Mutation	SNP	C	TCGA-2G-AAGY-01A-11D-A42Y-10		25457291	37568229	77	2939											
DDX27	55661	broad.mit.edu	37	chr20	47858511	47858511	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgaaggatgccaaaaaaaAgggggagatgacagtgagtg	15	3	0	4	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	DDX27	NM_017895	exon17	c.A2072G	p.K691R	AAAAAAAGGGGGA		110	4	0.04	110	0	0		74		339	1	0				G	47858511	A	G	47858511	3	3	42	1	0	0	0	0	1	0	0	0	4377	72	3	4	2138	4	DDX27	20	47858511	Missense_Mutation	SNP	A	TCGA-2G-AAGY-01A-11D-A42Y-10	22401220	47858511	15167009	78	2940											
GAB4	128954	bcgsc.ca	37	chr22	17488891	17488891	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccgctgtacagcacgtgGccacttctcgtgcttccgcc	10	17	1	0	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	GAB4	NM_001037814	exon1	c.C114A	p.G38G	CACGTGGCCACTT		172	0	0	176	1	0.0056818182		95		0	0					T	17488891	G	T	17488891	2	4	42	1	0	0	0	0	0	0	0	1	6185	1190	42	2		2	GAB4	22	17488891	Silent	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10		17488891	33815675	79	2941											
TFIP11	24144	mdanderson.org	37	chr22	26895573	26895573	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagctgtagtagaccttctGctcccggcctgtcatgtcta	10	12	3	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_001008697	exon10	c.C826A	p.Q276K	CCTTCTGCTCCCG		30	3	0.1	64	0	0				100	0	0				T	26895573	G	T	26895573	3	4	42	1	0	0	0	0	1	0	0	0	15866	1328	46	2	1715	2	TFIP11	22	26895573	Missense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	9406682	26895573	24408993	80	2942											
SHANK3	85358	mdanderson.org	37	chr22	51169219	51169219	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgggggcccgggcggcgggGcctcgtactcggtgaggccc	20	15	0	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	.	NM_033517	exon22	c.G4633T	p.A1545S	GGCGGGGCCTCGT		12	2	0.17	15	0	0				21	0	0				T	51169219	G	T	51169219	3	4	42	1	0	0	0	0	1	0	0	0	14320	1203	42	2	4813	2	SHANK3	22	51169219	Missense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10	24273646	51169219	135347	81	2943											
PTCHD1	139411	broad.mit.edu	37	chrX	23398203	23398203	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgattctggtggttaccatgGccatcctgtgttgctctatg	11	9	2	1	novel		TCGA-2G-AAGY-01A-11D-A42Y-10	TCGA-2G-AAGY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	da2a7140-5541-4d62-8d1a-eb9ecab13e93	83598a70-86fa-44e5-833c-6d397c4dd186	.	PTCHD1	NM_173495	exon2	c.G847T	p.A283S	ACCATGGCCATCC		194	5	0.03	112	0	0		213		0	0					T	23398203	G	T	23398203	3	4	42	1	0	0	0	0	1	0	0	0	12780	1203	42	2	853	2	PTCHD1	23	23398203	Missense_Mutation	SNP	G	TCGA-2G-AAGY-01A-11D-A42Y-10		23398203	131872357	82	2944											
PLCH2	9651	broad.mit.edu	37	chr1	2436149	2436149	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcgtgcaggactgccccGtggctgccaagtccaagagc	15	13	0	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	PLCH2	NM_014638	exon22	c.G3748T	p.V1250L	TGCCCCGTGGCTG		90	3	0.03	76	0	0		131		3	0	0				T	2436149	G	T	2436149	3	4	43	1	0	0	0	0	1	0	0	0	12085	1145	40	1	3834	1	PLCH2	1	2436149	Missense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10		2436149	246814472	1	2945											
ZBTB48	3104	broad.mit.edu;mdanderson.org	37	chr1	6647661	6647661	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accgggcctcgagccggaatGgcctgcagatgcacatcaag	13	13	1	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	ZBTB48	NM_005341	exon7	c.G1348T	p.G450C	CGGAATGGCCTGC		66	4	0.06	71	0	0		33		57	0	0				T	6647661	G	T	6647661	3	4	43	1	0	0	0	0	1	0	0	0	17607	1348	47	3	1370	3	ZBTB48	1	6647661	Missense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	4211512	6647661	242602960	2	2946											
SDC3	9672	hgsc.bcm.edu	37	chr1	31347395	31347395	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cactcaccggaacctctggcTcatcccggattgtggtcagg	11	14	4	0	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_014654	exon4	c.A911G	p.E304G	TCTGGCTCATCCC		88	4	0.05	113	0	0				23	0	0				C	31347395	T	C	31347395	3	2	43	1	0	0	0	0	1	0	0	0	14006	1551	54	4	425	4	SDC3	1	31347395	Missense_Mutation	SNP	T	TCGA-2G-AAGZ-01A-11D-A42Y-10	24699734	31347395	217903226	3	2947											
HCN3	57657	broad.mit.edu;mdanderson.org	37	chr1	155258014	155258014	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccaggtctccctgctgggTccccctccaggaggaggtgg	14	15	1	0	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	HCN3	NM_020897	exon8	c.T2085C	p.G695G	GCTGGGTCCCCCT		32	3	0.09	35	1	0.0285714286		74		0	0					C	155258014	T	C	155258014	2	2	43	1	0	0	0	0	0	0	0	1	7038	1654	58	4		4	HCN3	1	155258014	Silent	SNP	T	TCGA-2G-AAGZ-01A-11D-A42Y-10	123910619	155258014	93992607	4	2948											
GON4L	54856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	155733205	155733205	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	tgcttcatccgtcatttcatCctctttctgcaggctttcca	5	14	5	0	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001037533	exon22	c.G4624T	p.D1542Y	TTTCATCCTCTTT		101	6	0.06	80	0	0				47	13	0.28				A	155733205	C	A	155733205	3	1	43	1	0	0	0	0	1	0	0	0	6610	855	30	3	2142	3	GON4L	1	155733205	Missense_Mutation	SNP	C	TCGA-2G-AAGZ-01A-11D-A42Y-10	475191	155733205	93517416	5	2949											
PAPPA2	60676	broad.mit.edu	37	chr1	176671868	176671868	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgtggagatgggaaggtgtCagagtgagtattttgtgtgt	17	1	1	3	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	PAPPA2	NM_020318	exon9	c.C3362G	p.S1121X	AGGTGTCAGAGTG		43	9	0.21	52	3	0.0576923077		665		0	0					G	176671868	C	G	176671868	4	3	43	1	0	0	0	0	0	1	0	0	11479	838	29	5	3445	5	PAPPA2	1	176671868	Nonsense_Mutation	SNP	C	TCGA-2G-AAGZ-01A-11D-A42Y-10	20938663	176671868	72578753	6	2950											
OBSCN	84033	mdanderson.org	37	chr1	228559278	228559278	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggccgccagggaggagcaGgccaccctcctggccaaagc	15	15	0	0	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001271223	exon105	c.G23670T	p.Q7890H	GGAGCAGGCCACC		35	3	0.09	27	0	0				2	0	0				T	228559278	G	T	228559278	3	4	43	1	0	0	0	0	1	0	0	0	10859	991	35	3	22379	3	OBSCN	1	228559278	Missense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	51887410	228559278	20691343	7	2951											
RYR2	6262	mdanderson.org	37	chr1	237789089	237789089	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cagaaaaaccagttgagagtGactccaaaaagtcctgtaag	9	8	0	3	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001035	exon40	c.G6151T	p.D2051Y	GAGAGTGACTCCA		46	3	0.07	60	0	0				0	0					T	237789089	G	T	237789089	3	4	43	1	0	0	0	0	1	0	0	0	13820	1290	45	3	6309	3	RYR2	1	237789089	Missense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	9229811	237789089	11461532	8	2952											
TTC27	55622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	33012134	33012134	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaactacatcctcaccaGcactgacgttggggaatttt	9	10	1	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_017735	exon16	c.G1916A	p.S639N	TCACCAGCACTGA		135	7	0.05	131	0	0				77	23	0.3				A	33012134	G	A	33012134	3	1	43	1	0	0	0	0	1	0	0	0	16756	971	34	2	1978	2	TTC27	2	33012134	Missense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10		33012134	210187239	9	2953											
HK2	3099	mdanderson.org	37	chr2	75113795	75113795	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcactcaaccccggcaaGcagaggtaggcacccaactg	9	15	2	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_000189	exon15	c.G2214T	p.K738N	CGGCAAGCAGAGG		41	3	0.07	42	0	0				63	0	0				T	75113795	G	T	75113795	3	4	43	1	0	0	0	0	1	0	0	0	7231	962	34	2	2272	2	HK2	2	75113795	Missense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	42101661	75113795	168085578	10	2954											
CTNNA2	1496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	80772149	80772149	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccaacaatgaagaagggGtgaaattagttcggatggca	12	6	1	3	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001164883	exon10	c.G1333T	p.V445L	GAAGGGGTGAAAT		76	8	0.11	78	0	0				0	0					T	80772149	G	T	80772149	3	4	43	1	0	0	0	0	1	0	0	0	4037	1261	44	3	1159	3	CTNNA2	2	80772149	Missense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	5658354	80772149	162427224	11	2955											
PGAP1	80055	broad.mit.edu	37	chr2	197711758	197711758	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagccacaatgaagaaagaaGtctcacagatgcagaagaca	9	8	1	6	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	PGAP1	NM_024989	exon22	c.C2119A	p.L707I	AAAGAAGTCTCAC		292	6	0.02	299	0	0		84		1	0	0				T	197711758	G	T	197711758	3	4	43	1	0	0	0	0	1	0	0	0	11824	1029	36	3	673	3	PGAP1	2	197711758	Missense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	116939609	197711758	45487615	12	2956											
AOX1	316	broad.mit.edu	37	chr2	201485446	201485446	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgtctggtgtgaagcatgCcacgggggaggccatctact	14	10	3	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	AOX1	NM_001159	exon17	c.C1778T	p.A593V	AGCATGCCACGGG		230	5	0.02	222	0	0		152		1	0	0				T	201485446	C	T	201485446	3	4	43	1	0	0	0	0	1	0	0	0	725	739	26	2	1844	2	AOX1	2	201485446	Missense_Mutation	SNP	C	TCGA-2G-AAGZ-01A-11D-A42Y-10	3773688	201485446	41713927	13	2957											
NEK10	152110	broad.mit.edu	37	chr3	27350472	27350472	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caatagaacattagtatctcGggcaccaagtaaatttacta	6	8	1	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	NEK10	NM_199347	exon11	c.C661A	p.R221R	TATCTCGGGCACC		463	4	0.01	379	0	0		271		0	0					T	27350472	G	T	27350472	2	4	43	1	0	0	0	0	0	0	0	1	10368	1124	39	1		1	NEK10	3	27350472	Silent	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10		27350472	170671958	14	2958											
ARHGAP31	57514	broad.mit.edu	37	chr3	119120673	119120673	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttcctttttactaggaaaAgaaaccaagggaaatttcaa	7	6	1	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	ARHGAP31	NM_020754	exon10	c.A1074G	p.K358K	AGGAAAAGAAACC		170	5	0.03	184	0	0		175		4	0	0				G	119120673	A	G	119120673	2	3	43	1	0	0	0	0	0	0	0	1	877	69	3	4		4	ARHGAP31	3	119120673	Silent	SNP	A	TCGA-2G-AAGZ-01A-11D-A42Y-10	91770201	119120673	78901757	15	2959											
CASR	846	mdanderson.org	37	chr3	121981253	121981253	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatcaagaaagttgaggcGtggcaggtgcgtccttcact	13	9	2	2	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001178065	exon4	c.G1371T	p.A457A	TGAGGCGTGGCAG		28	3	0.11	34	0	0				0	0					T	121981253	G	T	121981253	2	4	43	1	0	0	0	0	0	0	0	1	2700	1132	40	1		1	CASR	3	121981253	Silent	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	2860580	121981253	76041177	16	2960											
IFT122	55764	mdanderson.org	37	chr3	129239065	129239065	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggtgcttcagcatggctGctgcccctactgccgcaggt	13	14	1	0	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_052985	exon31	c.G3836T	p.C1279F	ATGGCTGCTGCCC		47	3	0.06	38	0	0				68	0	0				T	129239065	G	T	129239065	3	4	43	1	0	0	0	0	1	0	0	0	7598	1319	46	2	3961	2	IFT122	3	129239065	Missense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	7257812	129239065	68783365	17	2961											
LRRC66	339977	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr4	52861139	52861139	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatttctgcactggttccttGttagcaggagtgacatccag	11	9	1	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001024611	exon4	c.C2049T	p.N683N	TTCCTTGTTAGCA		80	7	0.09	80	0	0				0	0					A	52861139	G	A	52861139	2	1	43	1	0	0	0	0	0	0	0	1	9062	1368	48	3		3	LRRC66	4	52861139	Silent	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10		52861139	138293137	18	2962											
CNOT6L	246175	mdanderson.org	37	chr4	78678099	78678099	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagaatatcctgtgataaaGgattgcctaaagcagaagac	10	6	0	4	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_144571	exon5	c.C407A	p.P136H	GATAAAGGATTGC		49	3	0.06	56	0	0				0	0					T	78678099	G	T	78678099	3	4	43	1	0	0	0	0	1	0	0	0	3646	1000	35	3	1292	3	CNOT6L	4	78678099	Missense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	25816960	78678099	112476177	19	2963											
CDS1	1040	broad.mit.edu;mdanderson.org	37	chr4	85560085	85560085	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccttttttagttgtctccTaaaaagacttgggaaggatt	9	7	1	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	CDS1	NM_001263	exon9	c.T819C	p.P273P	GTCTCCTAAAAAG		97	4	0.04	87	0	0		58		0	0					C	85560085	T	C	85560085	2	2	43	1	0	0	0	0	0	0	0	1	3199	1509	53	4		4	CDS1	4	85560085	Silent	SNP	T	TCGA-2G-AAGZ-01A-11D-A42Y-10	6881986	85560085	105594191	20	2964											
DAB2	1601	bcgsc.ca;mdanderson.org	37	chr5	39376964	39376964	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatctctttatccccaagtGggtctaaggcagtgaaggca	11	9	2	2	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	DAB2	NM_001343	exon12	c.C1925A	p.P642Q	CCAAGTGGGTCTA		82	5	0.06	130	0	0		124		20	0	0				T	39376964	G	T	39376964	3	4	43	1	0	0	0	0	1	0	0	0	4242	1348	47	3	399	3	DAB2	5	39376964	Missense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10		39376964	141538296	21	2965											
PCDHGB1	0	broad.mit.edu	37	chr5	140729996	140729996	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggatctggggctcagtgtcCgggagttgccaactcgaaaa	14	9	2	0	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	PCDHGB1	NM_018922	exon1	c.C169T	p.R57W	AGTGTCCGGGAGT		149	4	0.03	165	0	0		198		1	0	0				T	140729996	C	T	140729996	3	4	43	1	0	0	0	0	1	0	0	0	11608	643	23	1	171	1	PCDHGB1	5	140729996	Missense_Mutation	SNP	C	TCGA-2G-AAGZ-01A-11D-A42Y-10	101353032	140729996	40185264	22	2966											
RUNX2	860	hgsc.bcm.edu;mdanderson.org	37	chr6	45390457	45390457	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcaacagcagcagcaGcagcagcaacagcagcagca	11	14	0	0	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001024630	exon3	c.G186A	p.Q62Q	GCAGCAGCAGCAG		48	8	0.17	45	0	0				0	0					A	45390457	G	A	45390457	2	1	43	1	0	0	0	0	0	0	0	1	13799	962	34	2		2	RUNX2	6	45390457	Silent	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10		45390457	125724610	23	2967											
EIF3B	8662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr7	2404052	2404052	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtctcctaagggcacctacCtggctacctttcatcaaaga	8	13	3	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001037283	exon6	c.C1045T	p.L349L	ACCTACCTGGCTA		100	4	0.04	111	0	0				706	126	0.18				T	2404052	C	T	2404052	2	4	43	1	0	0	0	0	0	0	0	1	5039	680	24	3		3	EIF3B	7	2404052	Silent	SNP	C	TCGA-2G-AAGZ-01A-11D-A42Y-10		2404052	156734611	24	2968											
COBL	23242	broad.mit.edu;mdanderson.org	37	chr7	51095412	51095412	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagccgccatcctcaccttGcgtagtctgtccttccctcc	7	18	2	0	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	COBL	NM_015198	exon10	c.C3381G	p.R1127R	CACCTTGCGTAGT		141	5	0.04	138	0	0		167		21	3	0.14	rescued with RNA-seq			C	51095412	G	C	51095412	2	2	43	1	0	0	0	0	0	0	0	1	3676	1306	46	5		5	COBL	7	51095412	Silent	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	48691360	51095412	108043251	25	2969											
CACNA2D1	781	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	81693631	81693631	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acaactcacacatccaccagAataagcatgtctttaggaga	6	11	2	2	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	CACNA2D1	NM_000722	exon9	c.T768A	p.I256I	CACCAGAATAAGC		368	17	0.05	381	1	0.0026246719		191		0	0					T	81693631	A	T	81693631	2	4	43	1	0	0	0	0	0	0	0	1	2566	242	9	5		5	CACNA2D1	7	81693631	Silent	SNP	A	TCGA-2G-AAGZ-01A-11D-A42Y-10	30598219	81693631	77445032	26	2970											
CAV1	857	ucsc.edu	37	chr7	116166628	116166628	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acagggcaacatctacaagcCcaacaacaaggccatggcag	9	13	1	0	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	CAV1	NM_001753	exon2	c.C80G	p.P27R	ACAAGCCCAACAA		84	6	0.07	115	0	0		13		301	89	0.3				G	116166628	C	G	116166628	3	3	43	1	0	0	0	0	1	0	0	0	2711	623	22	5	86	5	CAV1	7	116166628	Missense_Mutation	SNP	C	TCGA-2G-AAGZ-01A-11D-A42Y-10	34472997	116166628	42972035	27	2971											
GRM8	2918	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	126086148	126086148	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tattaggaagtgctcccgctCttgaccatcggaaactctac	8	12	2	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001127323	exon10	c.G2709C	p.K903N	CCCGCTCTTGACC		66	5	0.08	97	0	0				0	0					G	126086148	C	G	126086148	3	3	43	1	0	0	0	0	1	0	0	0	6843	912	32	5	75	5	GRM8	7	126086148	Missense_Mutation	SNP	C	TCGA-2G-AAGZ-01A-11D-A42Y-10	9919520	126086148	33052515	28	2972											
PYCRL	65263	broad.mit.edu;bcgsc.ca	37	chr8	144689164	144689175	+	In_Frame_Del	DEL	CCAAGATGTGTT	CCAAGATGTGTT	-													caccccagcagccacggacaCcaagatgtgttcagtggtga					novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	CCAAGATGTGTT	CCAAGATGTGTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	PYCRL	NM_023078	exon3	c.320_331del	p.107_111del	CGGACACCAAGAT		277	11	0.04	269	0	0		14		11	0	0				-	144689175	CCAAGATGTGTT	-	144689164	7	5	43	1	0	1	0	1	0	0	0	0	12908	507	18	0	545	0	PYCRL	8	144689164	In_Frame_Del	DEL	CCAAGATGTGTT	TCGA-2G-AAGZ-01A-11D-A42Y-10		144689164	1674858	29	2973											
OPLAH	26873	mdanderson.org	37	chr8	145114512	145114512	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggagctcaccaggtcaaagAggtccccacgggcttgggtg	15	11	2	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_017570	exon3	c.T353C	p.L118P	TCAAAGAGGTCCC		53	3	0.06	55	0	0				4	0	0				G	145114512	A	G	145114512	3	3	43	1	0	0	0	0	1	0	0	0	10923	304	11	4	3615	4	OPLAH	8	145114512	Missense_Mutation	SNP	A	TCGA-2G-AAGZ-01A-11D-A42Y-10	425348	145114512	1249510	30	2974											
MFSD3	113655	mdanderson.org	37	chr8	145735026	145735026	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcccgccgctgtggcggggTtgctgctgttgttgaacctg	16	11	0	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_138431	exon1	c.T310G	p.L104V	GCGGGGTTGCTGC		14	6	0.43	10	6	0.6				11	5	0.45				G	145735026	T	G	145735026	3	3	43	1	0	0	0	0	1	0	0	0	9581	1722	60	4	312	4	MFSD3	8	145735026	Missense_Mutation	SNP	T	TCGA-2G-AAGZ-01A-11D-A42Y-10	620514	145735026	628996	31	2975											
PRSS3	5646	broad.mit.edu;bcgsc.ca	37	chr9	33797853	33797855	+	In_Frame_Del	DEL	ACA	ACA	-													ccaggtgagactgggagagcAcaacatcaaagtcctggagg					novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	ACA	ACA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	PRSS3	NM_007343	exon3	c.398_400del	p.133_134del	GAGAGCACAACAT		101	10	0.1	142	0	0		79		0	0					-	33797855	ACA	-	33797853	7	5	43	1	0	1	0	1	0	0	0	0	12670	159	6	0	452	0	PRSS3	9	33797853	In_Frame_Del	DEL	ACA	TCGA-2G-AAGZ-01A-11D-A42Y-10		33797853	107415578	32	2976											
COL27A1	85301	broad.mit.edu	37	chr9	117037945	117037945	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgccctgccacccagggggAcaggggagacccagggcctg	16	14	0	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	COL27A1	NM_032888	exon37	c.A3614G	p.D1205G	AGGGGGACAGGGG		105	5	0.05	83	1	0.0120481928		200		20	0	0				G	117037945	A	G	117037945	3	3	43	1	0	0	0	0	1	0	0	0	3708	275	10	4	3760	4	COL27A1	9	117037945	Missense_Mutation	SNP	A	TCGA-2G-AAGZ-01A-11D-A42Y-10	83240092	117037945	24175486	33	2977											
RAPGEF1	2889	mdanderson.org	37	chr9	134497191	134497191	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtcactcaccagctgccGctgcttggggggtagggcgg	18	11	2	0	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_198679	exon11	c.C1900A	p.R634R	GCTGCCGCTGCTT		55	3	0.05	63	0	0				32	0	0				T	134497191	G	T	134497191	2	4	43	1	0	0	0	0	0	0	0	1	13094	1086	38	1		1	RAPGEF1	9	134497191	Silent	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	17459246	134497191	6716240	34	2978											
CNNM1	26507	mdanderson.org	37	chr10	101089340	101089340	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ggggcaccctgcgcgccgccGaaggcaccagcttcctcctg	13	18	0	0	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	CNNM1_ENST00000356713,right_upper_lobe,carcinoma,0,1	CNNM1_ENST00000356713	NM_020348	exon1	c.G196T	p.E66X	GCCGCCGAAGGCA		21	3	0.14	22	0	0		0	1	0	0					T	101089340	G	T	101089340	4	4	43	1	0	0	0	0	0	1	0	0	3635	1059	37	1	198	1	CNNM1	10	101089340	Nonsense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10		101089340	34445407	35	2979											
HPS6	79803	mdanderson.org	37	chr10	103826173	103826173	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtaggcccgtgggggtcTgcagccctaggcacatttca	13	13	2	0	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_024747	exon1	c.T942C	p.S314S	GGGGTCTGCAGCC		45	3	0.07	37	0	0				22	0	0				C	103826173	T	C	103826173	2	2	43	1	0	0	0	0	0	0	0	1	7383	1567	55	4		4	HPS6	10	103826173	Silent	SNP	T	TCGA-2G-AAGZ-01A-11D-A42Y-10	2736833	103826173	31708574	36	2980											
PPRC1	23082	mdanderson.org	37	chr10	103892852	103892852	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgcgccggggacggagagaCggagtcgcgccgcccccgag	19	15	0	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_015062	exon1	c.C27T	p.D9D	GAGAGACGGAGTC		19	3	0.16	22	0	0				7	0	0				T	103892852	C	T	103892852	2	4	43	1	0	0	0	0	0	0	0	1	12458	535	19	1		1	PPRC1	10	103892852	Silent	SNP	C	TCGA-2G-AAGZ-01A-11D-A42Y-10	66679	103892852	31641895	37	2981											
FAM160A2	84067	mdanderson.org	37	chr11	6245294	6245294	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagctgccatgtcaacacaCgggtcagcagatcctcgtgc	11	14	2	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_032127	exon3	c.G323A	p.R108H	AACACACGGGTCA		75	4	0.05	81	0	0				12	0	0				T	6245294	C	T	6245294	3	4	43	1	0	0	0	0	1	0	0	0	5499	536	19	1	2677	1	FAM160A2	11	6245294	Missense_Mutation	SNP	C	TCGA-2G-AAGZ-01A-11D-A42Y-10		6245294	128761222	38	2982											
HNRNPUL2	221092	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	62490079	62490079	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaggagcacttacagcaaaGcagccaataacatcattctc	6	12	3	0	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	HNRNPUL2,NS,carcinoma,-1,1	HNRNPUL2	NM_001079559	exon6	c.C1089T	p.C363C	AGCAAAGCAGCCA		148	15	0.1	180	0	0		-1	1	121	29	0.24				A	62490079	G	A	62490079	2	1	43	1	0	0	0	0	0	0	0	1	7315	963	34	2		2	HNRNPUL2	11	62490079	Silent	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	56244785	62490079	72516437	39	2983											
C11orf68	83638	mdanderson.org	37	chr11	65685142	65685142	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcctccagtacacccaagcGgtccgtgaagtcgtccgtgt	11	15	0	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001135635	exon2	c.C670T	p.R224C	CCAAGCGGTCCGT		55	3	0.05	68	0	0				106	0	0				A	65685142	G	A	65685142	3	1	43	1	0	0	0	0	1	0	0	0	1663	1116	39	1	215	1	C11orf68	11	65685142	Missense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	3195063	65685142	69321374	40	2984											
CST6	1474	mdanderson.org	37	chr11	65779678	65779678	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagaaggcggcgcaggcgGccgtggccagctacaacatg	16	12	0	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001323	exon1	c.G163A	p.A55T	CAGGCGGCCGTGG		40	3	0.08	42	0	0				0	0					A	65779678	G	A	65779678	3	1	43	1	0	0	0	0	1	0	0	0	4001	1203	42	2	165	2	CST6	11	65779678	Missense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	94536	65779678	69226838	41	2985											
C11orf73	51501	broad.mit.edu;mdanderson.org	37	chr11	86013506	86013506	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgccatgtttggctgcttgGtggcggggaggctggtgagg	20	7	0	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	C11orf73	NM_016401	exon1	c.G16T	p.V6L	TGCTTGGTGGCGG		58	4	0.07	53	0	0		9		162	0	0				T	86013506	G	T	86013506	3	4	43	1	0	0	0	0	1	0	0	0	1666	1261	44	3	18	3	C11orf73	11	86013506	Missense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	20233828	86013506	48993010	42	2986											
FOLH1B	219595	broad.mit.edu	37	chr11	89403957	89403958	+	RNA	INS	-	-	T													tttcttctgagttttctgaaINStttttttttaccatattttt					rs36065337	bycluster;by1000genomes	TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	FOLH1B	.	.	.	.	TTCTGAATTTTTT		6	3	0.5	7	0	0		93		0	0					T	89403958	-	T	89403957	6	5	43	0	1	1	1	0	0	0	0	0	6012	116	4	0		0	FOLH1B	11	89403957	RNA	INS	-	TCGA-2G-AAGZ-01A-11D-A42Y-10	3390451	89403957	45602559	43	2987											
ZC3H12C	85463	mdanderson.org	37	chr11	110035632	110035632	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tctcaggcccacgaagccctGaaaggcgtttctccttagac	9	14	2	2	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_033390	exon6	c.G1822A	p.E608K	AGCCCTGAAAGGC		84	4	0.05	98	0	0				1	0	0				A	110035632	G	A	110035632	3	1	43	1	0	0	0	0	1	0	0	0	17621	1291	45	3	1844	3	ZC3H12C	11	110035632	Missense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	20631675	110035632	24970884	44	2988											
KCNJ5	3762	broad.mit.edu	37	chr11	128781827	128781827	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagctgtgcctcatgttccGggtgggcgacctccgcaact	13	13	1	0	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	KCNJ5,NS,carcinoma,+1,1	KCNJ5	NM_000890	exon2	c.G659T	p.R220L	TGTTCCGGGTGGG		116	4	0.03	137	0	0		560	1	7	0	0				T	128781827	G	T	128781827	3	4	43	1	0	0	0	0	1	0	0	0	8097	1116	39	1	661	1	KCNJ5	11	128781827	Missense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	18746195	128781827	6224689	45	2989											
PRB3	5544	broad.mit.edu	37	chr12	11420652	11420652	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctggctttcccggatgaggCgggggaccttgggactggtt	17	9	1	1	rs74786167	bycluster;byfrequency	TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	PRB3	NM_006249	exon3	c.G531A	p.P177P	ATGAGGCGGGGGA		343	13	0.04	251	3	0.0119521912		84		6	0	0				T	11420652	C	T	11420652	1	4	43	0	1	0	0	0	0	0	0	0	12495	755	27	1		1	PRB3	12	11420652	RNA	SNP	C	TCGA-2G-AAGZ-01A-11D-A42Y-10		11420652	122431243	46	2990											
DDX11	1663	broad.mit.edu	37	chr12	31237980	31237980	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acaggcccggaggctgagcgGctggagcagctggagtctgg	19	10	1	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	DDX11	NM_030653	exon5	c.G558A	p.R186R	TGAGCGGCTGGAG		531	6	0.01	414	2	0.0048309179		188		60	0	0				A	31237980	G	A	31237980	2	1	43	1	0	0	0	0	0	0	0	1	4366	1190	42	2		2	DDX11	12	31237980	Silent	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	19817328	31237980	102613915	47	2991											
SAMD4A	23034	mdanderson.org	37	chr14	55034821	55034821	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acgtcctcgaacgcgaggccAacagccccggtaagtgtgcg	13	14	0	0	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001161576	exon1	c.A187G	p.N63D	GAGGCCAACAGCC		11	2	0.18	13	0	0				5	0	0				G	55034821	A	G	55034821	3	3	43	1	0	0	0	0	1	0	0	0	13872	130	5	4	186	4	SAMD4A	14	55034821	Missense_Mutation	SNP	A	TCGA-2G-AAGZ-01A-11D-A42Y-10		55034821	52314719	48	2992											
RBM25	58517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	73577750	73577750	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccagtggcaatgcaacacCtaacactcctggggatgagt	11	11	0	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_021239	exon15	c.C1904G	p.P635R	CAACACCTAACAC		90	6	0.07	60	0	0				116	30	0.26				G	73577750	C	G	73577750	3	3	43	1	0	0	0	0	1	0	0	0	13176	681	24	5	1958	5	RBM25	14	73577750	Missense_Mutation	SNP	C	TCGA-2G-AAGZ-01A-11D-A42Y-10	18542929	73577750	33771790	49	2993											
ATXN3	4287	hgsc.bcm.edu	37	chr14	92537354	92537355	+	In_Frame_Ins	INS	-	-	CTGCTGCTGCTGCTGCTG													ctctgtcctgataggtccccINSctgctgctgctgctgctgct					rs76478261	alternate_allele	TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	ATXN3,NS,carcinoma,0,7	ATXN3	NM_004993	exon10	c.916_917insCAGCAGCAGCAGCAGCAG	p.G306delinsQQQQQQG	GGTCCCCCTGCTG		59	0	0	79	0	0		46		107	0	0				CTGCTGCTGCTGCTGCTG	92537355	-	CTGCTGCTGCTGCTGCTG	92537354	7	5	43	1	0	1	1	0	0	0	0	0	1211	623	22	0	177	0	ATXN3	14	92537354	In_Frame_Ins	INS	-	TCGA-2G-AAGZ-01A-11D-A42Y-10	18959604	92537354	14812186	50	2994											
HERC1	8925	hgsc.bcm.edu;broad.mit.edu	37	chr15	63904544	63904545	+	Frame_Shift_Del	DEL	CG	CG	-													caaacctcatgaaaagcaccCgctcctcattggagaactct					novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	CG	CG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	HERC1	NM_003922	exon77	c.14306_14307del	p.4769_4769del	AGCACCCGCTCCT		172	16	0.09	177	0	0		624		73	0	0				-	63904545	CG	-	63904544	7	5	43	1	0	1	0	1	0	0	0	0	7097	652	23	0	287	0	HERC1	15	63904544	Frame_Shift_Del	DEL	CG	TCGA-2G-AAGZ-01A-11D-A42Y-10		63904544	38626848	51	2995											
WHAMM	123720	mdanderson.org	37	chr15	83478717	83478717	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccccgtccagctgggccgGcctgctctcggccgcggggc	15	19	1	0	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001080435	exon1	c.G239A	p.G80D	GGGCCGGCCTGCT		10	2	0.2	12	0	0				0	0					A	83478717	G	A	83478717	3	1	43	1	0	0	0	0	1	0	0	0	17420	1203	42	2	241	2	WHAMM	15	83478717	Missense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	19574173	83478717	19052675	52	2996											
PRSS33	260429	mdanderson.org	37	chr16	2835065	2835065	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actcccaggcagcacaatgcGctcagcctggggcacgtccg	12	16	1	0	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_152891	exon5	c.C622A	p.R208S	CAATGCGCTCAGC		29	3	0.1	30	0	0				27	0	0				T	2835065	G	T	2835065	3	4	43	1	0	0	0	0	1	0	0	0	12671	1087	38	1	228	1	PRSS33	16	2835065	Missense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10		2835065	87519688	53	2997											
SMG1	23049	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	18844390	18844390	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggtctgctcaataagaccGtccagttcatgcagcatact	9	11	3	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	SMG1	NM_015092	exon51	c.C8664T	p.D2888D	AAGACCGTCCAGT		205	7	0.03	196	0	0		401		4	0	0				A	18844390	G	A	18844390	2	1	43	1	0	0	0	0	0	0	0	1	14848	1136	40	1		1	SMG1	16	18844390	Silent	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	16009325	18844390	71510363	54	2998											
CD19	930	broad.mit.edu	37	chr16	28944670	28944670	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaaggggcctaagtcattGctgagcctagagctgaagga	13	10	1	3	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	CD19	NM_001178098	exon4	c.G675T	p.L225F	GTCATTGCTGAGC		109	4	0.04	114	0	0		65		1	0	0				T	28944670	G	T	28944670	3	4	43	1	0	0	0	0	1	0	0	0	2995	1310	46	2	689	2	CD19	16	28944670	Missense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	10100280	28944670	61410083	55	2999											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	30734457	30734457	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cccctggccggctacccacaCctactctgggtactgctcga	9	18	1	0	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_006662	exon24	c.C4066G	p.P1356A	CCCACACCTACTC		129	9	0.07	120	0	0				9	1	0.11				G	30734457	C	G	30734457	3	3	43	1	0	0	0	0	1	0	0	0	15190	507	18	5	4152	5	SRCAP	16	30734457	Missense_Mutation	SNP	C	TCGA-2G-AAGZ-01A-11D-A42Y-10	1789787	30734457	59620296	56	3000											
FBXL19	54620	mdanderson.org	37	chr16	30953750	30953750	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctctctgtctctgccctggGctcagccccactgccagccc	9	20	3	0	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001099784	exon9	c.G1580A	p.G527D	CCCTGGGCTCAGC		44	3	0.07	50	0	0				62	0	0				A	30953750	G	A	30953750	3	1	43	1	0	0	0	0	1	0	0	0	5747	1203	42	2	1614	2	FBXL19	16	30953750	Missense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	219293	30953750	59401003	57	3001											
CES2	8824	hgsc.bcm.edu;broad.mit.edu	37	chr16	66977848	66977848	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gccgggctctgaaggcccacAggctccagttctggaagaag	14	12	2	2	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_003869	exon12	c.A1792G	p.R598G	GCCCACAGGCTCC		98	4	0.04	104	0	0				42	0	0				G	66977848	A	G	66977848	3	3	43	1	0	0	0	0	1	0	0	0	3292	179	7	4	1838	4	CES2	16	66977848	Missense_Mutation	SNP	A	TCGA-2G-AAGZ-01A-11D-A42Y-10	36024098	66977848	23376905	58	3002											
KRT37	8688	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	39578411	39578411	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcagcactgcagctcctcGgagcaggacatggcctgcag	14	13	0	0	rs147477673		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	KRT37	NM_003770	exon5	c.C930T	p.S310S	CTCCTCGGAGCAG		136	11	0.08	116	1	0.0086206897		61		0	0					A	39578411	G	A	39578411	2	1	43	1	0	0	0	0	0	0	0	1	8516	1103	39	1		1	KRT37	17	39578411	Silent	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10		39578411	41616799	59	3003											
COG1	9382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	71204453	71204453	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctctacatccaatggcagGttgtccccccggcacgctcc	8	17	1	0	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_018714	exon14	c.G2806T	p.V936F	TGGCAGGTTGTCC		65	7	0.11	77	0	0				178	32	0.18				T	71204453	G	T	71204453	3	4	43	1	0	0	0	0	1	0	0	0	3680	1275	44	3	2860	3	COG1	17	71204453	Missense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	31626042	71204453	9990757	60	3004											
ZNF236	7776	mdanderson.org	37	chr18	74580747	74580747	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaacccggcagcatgcctGcaaggcctgcaagaaagagt	13	11	0	2	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_007345	exon4	c.G464A	p.C155Y	ATGCCTGCAAGGC		33	3	0.09	33	0	0				1	0	0				A	74580747	G	A	74580747	3	1	43	1	0	0	0	0	1	0	0	0	17846	1319	46	2	478	2	ZNF236	18	74580747	Missense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10		74580747	3496501	61	3005											
HNRNPM	4670	mdanderson.org	37	chr19	8550553	8550553	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cattgaccgcctcgggggtgCcggcatggagcgcatgggcg	18	12	0	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_005968	exon14	c.C1241T	p.A414V	GGGGTGCCGGCAT		13	3	0.23	27	0	0				509	1	0				T	8550553	C	T	8550553	3	4	43	1	0	0	0	0	1	0	0	0	7311	739	26	2	1295	2	HNRNPM	19	8550553	Missense_Mutation	SNP	C	TCGA-2G-AAGZ-01A-11D-A42Y-10		8550553	50578430	62	3006											
LRP3	4037	mdanderson.org	37	chr19	33696438	33696438	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgccccgacctggcgtgCggccggcggctgggcagctt	18	15	0	0	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_002333	exon5	c.C762T	p.C254C	GGCGTGCGGCCGG		31	2	0.06	33	0	0				17	0	0				T	33696438	C	T	33696438	2	4	43	1	0	0	0	0	0	0	0	1	9002	776	27	1		1	LRP3	19	33696438	Silent	SNP	C	TCGA-2G-AAGZ-01A-11D-A42Y-10	25145885	33696438	25432545	63	3007											
ZNF880	400713	hgsc.bcm.edu	37	chr19	52887146	52887146	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atgccggaaacaagtctcttAaaaatcaacttggattaacc	6	9	2	0	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	ZNF880,colon,carcinoma,-1,1	ZNF880	NM_001145434	exon4	c.A313T	p.K105X	TCTCTTAAAAATC		242	11	0.05	276	0	0		-1	1	27	0	0				T	52887146	A	T	52887146	4	4	43	1	0	0	0	0	0	1	0	0	18239	363	13	5	327	5	ZNF880	19	52887146	Nonsense_Mutation	SNP	A	TCGA-2G-AAGZ-01A-11D-A42Y-10	19190708	52887146	6241837	64	3008											
DEFB125	245938	mdanderson.org	37	chr20	77023	77023	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctacttccgagactatgCcaccaccttctcagacagct	6	16	1	2	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_153325	exon2	c.C436T	p.P146S	ACTATGCCACCAC		47	3	0.06	51	0	0				0	0					T	77023	C	T	77023	3	4	43	1	0	0	0	0	1	0	0	0	4438	739	26	2	442	2	DEFB125	20	77023	Missense_Mutation	SNP	C	TCGA-2G-AAGZ-01A-11D-A42Y-10		77023	62948497	65	3009											
TRPC4AP	26133	mdanderson.org	37	chr20	33609143	33609143	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctcagaagcccctggaggAgggaacacaatggaggctga	14	10	1	2	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_015638	exon9	c.T1068C	p.P356P	TGGAGGAGGGAAC		48	3	0.06	53	0	0				41	0	0				G	33609143	A	G	33609143	2	3	43	1	0	0	0	0	0	0	0	1	16641	291	11	4		4	TRPC4AP	20	33609143	Silent	SNP	A	TCGA-2G-AAGZ-01A-11D-A42Y-10	33532120	33609143	29416377	66	3010											
GGT1	2678	broad.mit.edu	37	chr22	25016921	25016921	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaggtgcttcgggagggggAgagactgaccctgccgcagc	17	10	0	2	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	GGT1	NM_013430	exon9	c.A617G	p.E206G	AGGGGGAGAGACT		277	6	0.02	319	1	0.0031347962		68		33	1	0.03				G	25016921	A	G	25016921	3	3	43	1	0	0	0	0	1	0	0	0	6402	304	11	4	635	4	GGT1	22	25016921	Missense_Mutation	SNP	A	TCGA-2G-AAGZ-01A-11D-A42Y-10		25016921	26287645	67	3011											
TPST2	8459	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	26936904	26936906	+	In_Frame_Del	DEL	CTC	CTC	-													tagtacacaggcaggcacttCtccttgcctacctccatgca					novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	CTC	CTC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	TPST2	NM_003595	exon3	c.692_694del	p.231_232del	GCACTTCTCCTTG		102	10	0.1	105	0	0		23		589	0	0				-	26936906	CTC	-	26936904	7	5	43	1	0	1	0	1	0	0	0	0	16488	912	32	0	456	0	TPST2	22	26936904	In_Frame_Del	DEL	CTC	TCGA-2G-AAGZ-01A-11D-A42Y-10	1919983	26936904	24367662	68	3012											
AP1B1	162	mdanderson.org	37	chr22	29730383	29730383	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctccagccccttagccttcAtggctgggagccagacctgc	10	16	2	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001127	exon17	c.T2180C	p.M727T	GCCTTCATGGCTG		54	3	0.06	58	0	0				97	0	0				G	29730383	A	G	29730383	3	3	43	1	0	0	0	0	1	0	0	0	727	217	8	4	697	4	AP1B1	22	29730383	Missense_Mutation	SNP	A	TCGA-2G-AAGZ-01A-11D-A42Y-10	2793479	29730383	21574183	69	3013											
PLA2G6	8398	broad.mit.edu	37	chr22	38565263	38565263	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctggggttgaccaggacGcagtcccaggtgcggttggg	17	10	0	1	rs150718378	bycluster;byfrequency;by1000genomes	TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	PLA2G6	NM_003560	exon2	c.C171T	p.C57C	CAGGACGCAGTCC		223	6	0.03	242	1	0.0041322314		54		13	0	0				A	38565263	G	A	38565263	2	1	43	1	0	0	0	0	0	0	0	1	12055	1079	38	1		1	PLA2G6	22	38565263	Silent	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	8834880	38565263	12739303	70	3014											
EP300	2033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	41573417	41573417	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgtgtcccagggtaaggCagcaggccaggtgacccctc	13	15	0	1	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	.	.	NM_001429	exon31	c.C5702T	p.A1901V	GTAAGGCAGCAGG		215	23	0.11	172	0	0				59	22	0.37				T	41573417	C	T	41573417	3	4	43	1	0	0	0	0	1	0	0	0	5176	710	25	2	5824	2	EP300	22	41573417	Missense_Mutation	SNP	C	TCGA-2G-AAGZ-01A-11D-A42Y-10	3008154	41573417	9731149	71	3015											
SBF1	6305	broad.mit.edu;mdanderson.org	37	chr22	50906112	50906112	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggcatcctccacgcgcGtcgtttcctgctgggggtca	13	14	1	0	novel		TCGA-2G-AAGZ-01A-11D-A42Y-10	TCGA-2G-AAGZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b9e36af2-c8cd-436c-9de1-408317d4f0a0	3de3355b-52d4-4275-a1e4-991e15876ae6	SBF1_ENST00000380817,NS,carcinoma,0,2	SBF1	NM_002972	exon4	c.C287A	p.T96K	ACGCGCGTCGTTT		78	4	0.05	83	0	0		211	2	12	0	0				T	50906112	G	T	50906112	3	4	43	1	0	0	0	0	1	0	0	0	13910	1145	40	1	5546	1	SBF1	22	50906112	Missense_Mutation	SNP	G	TCGA-2G-AAGZ-01A-11D-A42Y-10	9332695	50906112	398454	72	3016											
DNAJC16	23341	mdanderson.org	37	chr1	15892415	15892415	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgttaatttggttttaggAgggaaatgatgcccctgctg	12	5	0	1	rs2236215	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_015291	exon12	c.A1600T	p.R534W	TTTAGGAGGGAAA		99	3	0.03	193	0	0				21	0	0				T	15892415	A	T	15892415	3	4	44	1	0	0	0	0	1	0	0	0	4662	318	11	5	1642	5	DNAJC16	1	15892415	Missense_Mutation	SNP	A	TCGA-2G-AAH0-01A-11D-A42Y-10		15892415	233358206	1	3017											
L1TD1	54596	mdanderson.org	37	chr1	62676994	62676994	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaagaatttagagattatGttttgcatatgcccaccttg	8	6	0	3	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001164835	exon5	c.G2548T	p.V850F	GATTATGTTTTGC		86	6	0.07	197	0	0				999	0	0				T	62676994	G	T	62676994	3	4	44	1	0	0	0	0	1	0	0	0	8627	1377	48	3	2554	3	L1TD1	1	62676994	Missense_Mutation	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10	46784579	62676994	186573627	2	3018											
CD53	963	mdanderson.org	37	chr1	111440512	111440512	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccatctgtgtatgtgtgattGaggtaagagcttaaccacag	11	7	1	3	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_000560	exon7	c.G586T	p.E196X	GTGATTGAGGTAA		24	3	0.13	35	0	0				179	0	0				T	111440512	G	T	111440512	4	4	44	1	0	0	0	0	0	1	0	0	3045	1291	45	3	608	3	CD53	1	111440512	Nonsense_Mutation	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10	48763518	111440512	137810109	3	3019											
DUSP27	92235	mdanderson.org	37	chr1	167097040	167097040	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggatgaggacactgacaGtgccatagggagcttccgat	15	8	0	2	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001080426	exon5	c.G2672T	p.S891I	CTGACAGTGCCAT		22	2	0.09	47	1	0.0212765957				0	0					T	167097040	G	T	167097040	3	4	44	1	0	0	0	0	1	0	0	0	4850	1029	36	3	2690	3	DUSP27	1	167097040	Missense_Mutation	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10	55656528	167097040	82153581	4	3020											
RBBP5	5929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	205084037	205084037	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caagcagtgtgccccacctgTtaaaggtgcaagtcaaagcc	10	12	1	0	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_005057	exon3	c.A98G	p.N33S	CACCTGTTAAAGG		200	28	0.14	375	0	0				23	8	0.35				C	205084037	T	C	205084037	3	2	44	1	0	0	0	0	1	0	0	0	13153	1725	60	4	1566	4	RBBP5	1	205084037	Missense_Mutation	SNP	T	TCGA-2G-AAH0-01A-11D-A42Y-10	37986997	205084037	44166584	5	3021											
WDR43	23160	mdanderson.org	37	chr2	29158442	29158442	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagactgtattaaggatgcCcctgcatactattattccgt	8	9	0	1	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_015131	exon12	c.C1493A	p.P498H	GGATGCCCCTGCA		44	3	0.07	117	0	0				116	0	0				A	29158442	C	A	29158442	3	1	44	1	0	0	0	0	1	0	0	0	17354	623	22	3	1539	3	WDR43	2	29158442	Missense_Mutation	SNP	C	TCGA-2G-AAH0-01A-11D-A42Y-10		29158442	214040931	6	3022											
FBLN2	2199	broad.mit.edu;mdanderson.org	37	chr3	13612701	13612701	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacagtgaggaggaagaagaGgaggaggaggagagagagga	22	1	0	5	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	FBLN2	NM_001998	exon2	c.G846A	p.E282E	AGAAGAGGAGGAG		70	5	0.07	71	1	0.014084507		137		12	0	0				A	13612701	G	A	13612701	2	1	44	1	0	0	0	0	0	0	0	1	5731	991	35	3		3	FBLN2	3	13612701	Silent	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10		13612701	184409729	7	3023											
GPD1L	23171	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	32201135	32201135	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agacttctgctgaagtgtacCgcatcctcaaacagaaggga	10	10	2	3	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_015141	exon7	c.C928T	p.R310C	GTGTACCGCATCC		160	11	0.07	382	0	0				11	1	0.09				T	32201135	C	T	32201135	3	4	44	1	0	0	0	0	1	0	0	0	6644	652	23	1	954	1	GPD1L	3	32201135	Missense_Mutation	SNP	C	TCGA-2G-AAH0-01A-11D-A42Y-10	18588434	32201135	165821295	8	3024											
ITIH4	3700	mdanderson.org	37	chr3	52863240	52863240	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctggtgacgaccgtgtggGcaaatcgggatgagaccctg	17	9	0	2	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_002218	exon2	c.C146T	p.A49V	GTGTGGGCAAATC		86	5	0.06	120	0	0				5	0	0				A	52863240	G	A	52863240	3	1	44	1	0	0	0	0	1	0	0	0	7949	1203	42	2	2738	2	ITIH4	3	52863240	Missense_Mutation	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10	20662105	52863240	145159190	9	3025											
C3orf55	152078	mdanderson.org	37	chr3	157271080	157271080	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaactatagagtcaacactGcaaactcaagcactgatacg	7	10	2	2	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001130002	exon2	c.G34A	p.A12T	AACACTGCAAACT		51	3	0.06	103	0	0				0	0					A	157271080	G	A	157271080	3	1	44	1	0	0	0	0	1	0	0	0	2248	1319	46	2	36	2	C3orf55	3	157271080	Missense_Mutation	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10	104407840	157271080	40751350	10	3026											
MTTP	4547	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr4	100529976	100529976	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aaccgtaaagttcatgaaaaGactgtgcgcactgctgcagc	10	10	1	2	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	MTTP	NM_000253	exon13	c.G1611C	p.K537N	TGAAAAGACTGTG		46	4	0.09	122	0	0		127		0	0					C	100529976	G	C	100529976	3	2	44	1	0	0	0	0	1	0	0	0	10011	933	33	5	1657	5	MTTP	4	100529976	Missense_Mutation	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10		100529976	90624300	11	3027											
METTL14	57721	mdanderson.org	37	chr4	119621782	119621782	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggttctggggaggggttGgaccttggaagagtggtaag	20	3	1	1	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_020961	exon8	c.G723T	p.L241F	GGGGTTGGACCTT		50	3	0.06	144	0	0				15	0	0				T	119621782	G	T	119621782	3	4	44	1	0	0	0	0	1	0	0	0	9547	1339	47	3	753	3	METTL14	4	119621782	Missense_Mutation	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10	19091806	119621782	71532494	12	3028											
KLHL2	11275	bcgsc.ca;mdanderson.org	37	chr4	166231709	166231709	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtactccttttgcaggcatGgtctacatggctggacttgt	11	9	1	0	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	KLHL2	NM_001161521	exon10	c.G1056T	p.M352I	AGGCATGGTCTAC		83	5	0.06	147	0	0		42		8	0	0				T	166231709	G	T	166231709	3	4	44	1	0	0	0	0	1	0	0	0	8416	1348	47	3	1124	3	KLHL2	4	166231709	Missense_Mutation	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10	46609927	166231709	24922567	13	3029											
RHOBTB3	22836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	95067647	95067647	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcttatccgcacttacctGgggagaagccctctggtctc	12	13	2	1	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	RHOBTB3,caecum,carcinoma,0,1	RHOBTB3	NM_014899	exon2	c.G87A	p.L29L	TTACCTGGGGAGA		315	25	0.08	292	0	0		0	1	26	4	0.15				A	95067647	G	A	95067647	2	1	44	1	0	0	0	0	0	0	0	1	13384	1335	47	3		3	RHOBTB3	5	95067647	Silent	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10		95067647	85847613	14	3030											
SRP19	7310	broad.mit.edu	37	chr5	112228537	112228537	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	acaaaagaaatggggaatccGagagaaaaaagagtagtcat	11	4	1	3	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	ZRSR1_ENST00000391338,NS,carcinoma,-2,2	SRP19	.	.	.	.	GAATCCGAGAGAA		148	3	0.02	254	0	0		12	2	8	0	0				T	112228537	G	T	112228537	4	4	44	1	0	0	0	0	0	1	0	0	15209	1073	37	1		1	SRP19	5	112228537	Nonsense_Mutation	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10	17160890	112228537	68686723	15	3031											
ARSI	340075	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr5	149677844	149677844	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccaggatatggctggcgcGctgggcataaagcatagtgg	17	8	0	0	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	ARSI,NS,carcinoma,+2,2	ARSI	NM_001012301	exon2	c.C643T	p.R215C	TGGCGCGCTGGGC		62	5	0.08	94	0	0		2	2	9	2	0.22				A	149677844	G	A	149677844	3	1	44	1	0	0	0	0	1	0	0	0	993	1087	38	1	1070	1	ARSI	5	149677844	Missense_Mutation	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10	37449307	149677844	31237416	16	3032											
DNAH8	1769	mdanderson.org	37	chr6	38899770	38899770	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattctaacagagaaacagGtaatctctctctcaaggtaa	6	9	5	1	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001206927	exon76	c.11457+1G>T	.	AAACAGGTAATCT		54	3	0.06	113	0	0				0	0					T	38899770	G	T	38899770	5	4	44	1	0	0	0	0	0	0	1	0	4634	1275	44	3	11093	3	DNAH8	6	38899770	Splice_Site	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10		38899770	132215297	17	3033											
SENP6	26054	mdanderson.org	37	chr6	76343405	76343405	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaactttgaaaggcaacccaAttggacttaacatgttgagc	8	8	0	2	rs200483413		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001100409	exon4	c.A316G	p.I106V	AACCCAATTGGAC		50	3	0.06	105	0	0				52	0	0				G	76343405	A	G	76343405	3	3	44	1	0	0	0	0	1	0	0	0	14103	101	4	4	330	4	SENP6	6	76343405	Missense_Mutation	SNP	A	TCGA-2G-AAH0-01A-11D-A42Y-10	37443635	76343405	94771662	18	3034											
WIPI2	26100	mdanderson.org	37	chr7	5266967	5266967	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccacaaaaacatctgctcGctagccacgtgagtagagcc	10	13	1	2	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001033518	exon10	c.G1005T	p.S335S	CTGCTCGCTAGCC		59	3	0.05	56	0	0				301	1	0				T	5266967	G	T	5266967	2	4	44	1	0	0	0	0	0	0	0	1	17430	1074	38	1		1	WIPI2	7	5266967	Silent	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10		5266967	153871696	19	3035											
CROT	54677	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	87004971	87004971	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actgacatatatccacaagaAgtgccatagtgaacctgatg	8	9	0	4	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001143935	exon9	c.A764G	p.K255R	ACAAGAAGTGCCA		86	5	0.06	190	0	0				6	0	0				G	87004971	A	G	87004971	3	3	44	1	0	0	0	0	1	0	0	0	3917	72	3	4	790	4	CROT	7	87004971	Missense_Mutation	SNP	A	TCGA-2G-AAH0-01A-11D-A42Y-10	81738004	87004971	72133692	20	3036											
CLU	1191	mdanderson.org	37	chr8	27461858	27461858	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	actggtccttcatccgcaggCagcccgtggagttgtggcgg	15	12	1	0	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001831	exon6	c.G884T	p.C295F	CGCAGGCAGCCCG		48	3	0.06	66	0	0				109	1	0.01				A	27461858	C	A	27461858	3	1	44	1	0	0	0	0	1	0	0	0	3591	710	25	2	481	2	CLU	8	27461858	Missense_Mutation	SNP	C	TCGA-2G-AAH0-01A-11D-A42Y-10		27461858	118902164	21	3037											
SLC44A1	23446	mdanderson.org	37	chr9	108072110	108072110	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaaatacaaagttggaaGcaataccaaacagtggcatg	9	6	0	1	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_080546	exon3	c.G232T	p.A78S	TTGGAAGCAATAC		46	3	0.07	108	0	0				63	0	0				T	108072110	G	T	108072110	3	4	44	1	0	0	0	0	1	0	0	0	14689	971	34	2	242	2	SLC44A1	9	108072110	Missense_Mutation	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10		108072110	33141321	22	3038											
AKNA	80709	mdanderson.org	37	chr9	117124711	117124711	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggatcaaatcttccaggcgTccccttggagccggcaagcg	12	13	2	0	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_030767	exon8	c.A1891G	p.T631A	CAGGCGTCCCCTT		56	3	0.05	78	0	0				62	0	0				C	117124711	T	C	117124711	3	2	44	1	0	0	0	0	1	0	0	0	460	1667	58	4	2488	4	AKNA	9	117124711	Missense_Mutation	SNP	T	TCGA-2G-AAH0-01A-11D-A42Y-10	9052601	117124711	24088720	23	3039											
LARP4B	23185	mdanderson.org	37	chr10	861005	861005	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcacgcttgcgtctgcactGagggtctgaaacagggtcaa	12	10	4	2	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_015155	exon16	c.C1701A	p.L567L	TGCACTGAGGGTC		52	3	0.06	63	0	0				66	0	0				T	861005	G	T	861005	2	4	44	1	0	0	0	0	0	0	0	1	8669	1277	45	3		3	LARP4B	10	861005	Silent	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10		861005	134673742	24	3040											
IPMK	253430	mdanderson.org	37	chr10	59997522	59997522	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccagctctcttgggccccTtggaggtggttgtaactgtt	12	10	1	0	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_152230	exon2	c.A244G	p.R82G	GGCCCCTTGGAGG		58	3	0.05	80	0	0				9	0	0				C	59997522	T	C	59997522	3	2	44	1	0	0	0	0	1	0	0	0	7835	1608	56	4	1026	4	IPMK	10	59997522	Missense_Mutation	SNP	T	TCGA-2G-AAH0-01A-11D-A42Y-10	59136517	59997522	75537225	25	3041											
MKI67	4288	mdanderson.org	37	chr10	129914216	129914216	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atatgtacctgaggatttccTgaaacttttccttcagtgat	7	8	1	3	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_002417	exon7	c.A456G	p.S152S	ATTTCCTGAAACT		35	3	0.09	78	1	0.0128205128				12	0	0				C	129914216	T	C	129914216	2	2	44	1	0	0	0	0	0	0	0	1	9645	1567	55	4		4	MKI67	10	129914216	Silent	SNP	T	TCGA-2G-AAH0-01A-11D-A42Y-10	69916694	129914216	5620531	26	3042											
SLC43A1	8501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr11	57254608	57254608	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggtcccaccatcgccatgAaaagtggctgctgaagcaag	13	11	0	2	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001198810	exon14	c.T1493C	p.F498S	GCCATGAAAAGTG		49	4	0.08	81	0	0				471	101	0.21				G	57254608	A	G	57254608	3	3	44	1	0	0	0	0	1	0	0	0	14686	246	9	4	194	4	SLC43A1	11	57254608	Missense_Mutation	SNP	A	TCGA-2G-AAH0-01A-11D-A42Y-10		57254608	77751908	27	3043											
OR4D10	390197	mdanderson.org	37	chr11	59245149	59245149	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacagtgcccaaggttctgGtggaccttctgtctgaaaga	11	10	4	2	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001004705	exon1	c.G247T	p.V83L	GTTCTGGTGGACC		61	3	0.05	157	0	0				0	0					T	59245149	G	T	59245149	3	4	44	1	0	0	0	0	1	0	0	0	11101	1261	44	3	249	3	OR4D10	11	59245149	Missense_Mutation	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10	1990541	59245149	75761367	28	3044											
ZP1	22917	mdanderson.org	37	chr11	60642677	60642677	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctctccggggccagtggGctttgaggattcttatgggc	16	9	2	1	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_207341	exon11	c.G1730T	p.G577V	CAGTGGGCTTTGA		39	3	0.08	53	0	0				0	0					T	60642677	G	T	60642677	3	4	44	1	0	0	0	0	1	0	0	0	18256	1203	42	2	1772	2	ZP1	11	60642677	Missense_Mutation	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10	1397528	60642677	74363839	29	3045											
PITPNM1	9600	mdanderson.org	37	chr11	67267769	67267769	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgttgcacttggccatgCgctgggccagcatgcgagca	14	12	0	0	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001130848	exon6	c.G764A	p.R255H	GCCATGCGCTGGG		49	3	0.06	61	0	0				38	0	0				T	67267769	C	T	67267769	3	4	44	1	0	0	0	0	1	0	0	0	11997	768	27	1	3046	1	PITPNM1	11	67267769	Missense_Mutation	SNP	C	TCGA-2G-AAH0-01A-11D-A42Y-10	6625092	67267769	67738747	30	3046											
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	100211902	100211902	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggctgggaacccgtcataCcattagccaacgaatctgaa	10	11	2	1	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	CNTN5_ENST00000524871,bladder,carcinoma,-2,2	CNTN5_ENST00000524871	NM_001243270	exon22	c.C2995A	p.P999T	GTCATACCATTAG		114	10	0.09	272	0	0		-2	2	0	0					A	100211902	C	A	100211902	3	1	44	1	0	0	0	0	1	0	0	0	3667	507	18	3	3077	3	CNTN5	11	100211902	Missense_Mutation	SNP	C	TCGA-2G-AAH0-01A-11D-A42Y-10	32944133	100211902	34794614	31	3047											
ARHGEF12	23365	mdanderson.org	37	chr11	120302598	120302598	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcagtggagatgcttctcGgcccagtagtgacaatgcag	13	9	1	2	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_015313	exon11	c.G902T	p.R301L	CTTCTCGGCCCAG		47	3	0.06	116	0	0				11	0	0				T	120302598	G	T	120302598	3	4	44	1	0	0	0	0	1	0	0	0	894	1116	39	1	944	1	ARHGEF12	11	120302598	Missense_Mutation	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10	20090696	120302598	14703918	32	3048											
PPFIA2	8499	mdanderson.org	37	chr12	81671111	81671111	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attaccttttatttcatgttGgcttgcttcccgtcttcttt	5	10	3	0	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_003625	exon28	c.C3295A	p.Q1099K	CATGTTGGCTTGC		45	3	0.07	81	0	0				0	0					T	81671111	G	T	81671111	3	4	44	1	0	0	0	0	1	0	0	0	12354	1357	47	3	498	3	PPFIA2	12	81671111	Missense_Mutation	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10		81671111	52180784	33	3049											
DDX24	57062	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr14	94545823	94545823	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtgagctagactttcccTcctcctcctcctcttcttct	5	16	3	2	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	DDX24	NM_020414	exon2	c.A266G	p.E89G	TTTCCCTCCTCCT		119	7	0.06	148	1	0.0067567568		82		325	0	0				C	94545823	T	C	94545823	3	2	44	1	0	0	0	0	1	0	0	0	4374	1551	54	4	2345	4	DDX24	14	94545823	Missense_Mutation	SNP	T	TCGA-2G-AAH0-01A-11D-A42Y-10		94545823	12803717	34	3050											
SV2B	9899	mdanderson.org	37	chr15	91809917	91809917	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagattcaagaccattttcAagcaggtatgattgggaact	9	7	3	3	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_014848	exon8	c.A1114G	p.K372E	ATTTTCAAGCAGG		46	3	0.07	66	0	0				1	0	0				G	91809917	A	G	91809917	3	3	44	1	0	0	0	0	1	0	0	0	15473	131	5	4	1136	4	SV2B	15	91809917	Missense_Mutation	SNP	A	TCGA-2G-AAH0-01A-11D-A42Y-10		91809917	10721475	35	3051											
TTC23	64927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	99740253	99740253	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaacatattccaaagctgcTtgatagtgggacaaagcttc	8	9	1	1	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001040657	exon7	c.A630G	p.Q210Q	AGCTGCTTGATAG		74	18	0.24	147	0	0				5	2	0.4				C	99740253	T	C	99740253	2	2	44	1	0	0	0	0	0	0	0	1	16751	1606	56	4		4	TTC23	15	99740253	Silent	SNP	T	TCGA-2G-AAH0-01A-11D-A42Y-10	7930336	99740253	2791139	36	3052											
PPL	5493	mdanderson.org	37	chr16	4949240	4949240	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacctcatactggcgccggCggctggggtagtcgaggttg	16	12	1	0	rs61734749	bycluster;byfrequency;by1000genomes	TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_002705	exon7	c.G752A	p.R251H	CGCCGGCGGCTGG		51	3	0.06	49	0	0	0.009			2	0	0				T	4949240	C	T	4949240	3	4	44	1	0	0	0	0	1	0	0	0	12382	768	27	1	4582	1	PPL	16	4949240	Missense_Mutation	SNP	C	TCGA-2G-AAH0-01A-11D-A42Y-10		4949240	85405513	37	3053											
DNAH3	55567	mdanderson.org	37	chr16	21132080	21132080	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgccattgcagtggcagcCgcgtgcatgctgggctctcc	13	15	1	0	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	DNAH3_ENST00000261383,bladder,carcinoma,-2,4	DNAH3_ENST00000261383	NM_017539	exon11	c.G1680A	p.A560A	GGCAGCCGCGTGC		30	2	0.07	74	0	0		-2	4	0	0					T	21132080	C	T	21132080	2	4	44	1	0	0	0	0	0	0	0	1	4631	639	23	1		1	DNAH3	16	21132080	Silent	SNP	C	TCGA-2G-AAH0-01A-11D-A42Y-10	16182840	21132080	69222673	38	3054											
ARMC5	79798	mdanderson.org	37	chr16	31470916	31470916	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagctcgcggcggcggccgGggaggctctgggtggggaaa	22	10	1	0	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001105247	exon1	c.G71T	p.G24V	CGGCCGGGGAGGC		22	2	0.09	23	0	0				3	0	0				T	31470916	G	T	31470916	3	4	44	1	0	0	0	0	1	0	0	0	953	1232	43	3	73	3	ARMC5	16	31470916	Missense_Mutation	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10	10338836	31470916	58883837	39	3055											
HSF4	3299	mdanderson.org	37	chr16	67201672	67201672	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agccggccagtccaggggggGatggcgaggccgggctggcc	21	12	0	0	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	HSF4,NS,carcinoma,-2,1	HSF4	NM_001040667	exon11	c.G904T	p.D302Y	GGGGGGGATGGCG		29	3	0.1	52	0	0		-2	1	0	0					T	67201672	G	T	67201672	3	4	44	1	0	0	0	0	1	0	0	0	7438	1174	41	3	952	3	HSF4	16	67201672	Missense_Mutation	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10	35730756	67201672	23153081	40	3056											
PLSCR3	57048	mdanderson.org	37	chr17	7296551	7296551	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtccccggggtcggccaggCggacacgcagcggccggcgg	20	15	0	0	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_020360	exon5	c.G419A	p.R140H	GCCAGGCGGACAC		20	3	0.15	20	0	0				34	0	0				T	7296551	C	T	7296551	3	4	44	1	0	0	0	0	1	0	0	0	12158	768	27	1	484	1	PLSCR3	17	7296551	Missense_Mutation	SNP	C	TCGA-2G-AAH0-01A-11D-A42Y-10		7296551	73898659	41	3057											
CUEDC1	404093	broad.mit.edu	37	chr17	55962851	55962851	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctggggggcggccgtgccTcccccgcccccgcgtgcccc	14	22	0	0	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	CUEDC1	NM_001271875	exon2	c.A75G	p.G25G	CGTGCCTCCCCCG		34	10	0.29	25	7	0.28		37		2	0	0				C	55962851	T	C	55962851	2	2	44	1	0	0	0	0	0	0	0	1	4075	1538	54	4		4	CUEDC1	17	55962851	Silent	SNP	T	TCGA-2G-AAH0-01A-11D-A42Y-10	48666300	55962851	25232359	42	3058											
MIER2	54531	broad.mit.edu	37	chr19	327235	327235	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctcttcttcccctgaaaGcaaatccttcgctatttgtt	4	13	2	1	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	MIER2	NM_017550	exon5	c.C391T	p.L131F	CTGAAAGCAAATC		95	11	0.12	101	6	0.0594059406		51		202	0	0				A	327235	G	A	327235	3	1	44	1	0	0	0	0	1	0	0	0	9628	971	34	2	1286	2	MIER2	19	327235	Missense_Mutation	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10		327235	58801748	43	3059											
SEMA6B	10501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	4546434	4546434	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgaggaagatgcaggagCcgtcgggggcccacccgcag	18	12	0	2	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_032108	exon15	c.G1649A	p.G550D	CAGGAGCCGTCGG		122	7	0.06	98	0	0				130	19	0.15				T	4546434	C	T	4546434	3	4	44	1	0	0	0	0	1	0	0	0	14093	739	26	2	1029	2	SEMA6B	19	4546434	Missense_Mutation	SNP	C	TCGA-2G-AAH0-01A-11D-A42Y-10	4219199	4546434	54582549	44	3060											
TIMM44	10469	broad.mit.edu	37	chr19	7998441	7998441	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tggagtccttgtgcagcacgAcccccagggcctccctgggg	14	15	0	0	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	TIMM44	NM_006351	exon7	c.T698G	p.V233G	AGCACGACCCCCA		226	25	0.11	159	11	0.0691823899		47		220	1	0				C	7998441	A	C	7998441	3	2	44	1	0	0	0	0	1	0	0	0	15971	275	10	4	688	4	TIMM44	19	7998441	Missense_Mutation	SNP	A	TCGA-2G-AAH0-01A-11D-A42Y-10	3452007	7998441	51130542	45	3061											
RFX1	5989	mdanderson.org	37	chr19	14091461	14091461	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgcccgtgggggccccgGctgtcttgctggaagagctg	17	12	1	1	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_002918	exon6	c.C662T	p.A221V	GCCCCGGCTGTCT		26	3	0.12	25	0	0				17	0	0				A	14091461	G	A	14091461	3	1	44	1	0	0	0	0	1	0	0	0	13313	1203	42	2	2341	2	RFX1	19	14091461	Missense_Mutation	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10	6093020	14091461	45037522	46	3062											
ARHGAP33	115703	broad.mit.edu	37	chr19	36268760	36268760	+	Translation_Start_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggccccttcccgcggctgGctgactgcgcccatttccac	11	18	0	1	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	ARHGAP33	NM_052948	exon3	c.G139A	p.A47T	CGGCTGGCTGACT		156	4	0.03	170	0	0		102		29	0	0				A	36268760	G	A	36268760	1	1	44	1	0	0	0	0	0	0	0	0	879	1203	42	2		2	ARHGAP33	19	36268760	Translation_Start_Site	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10	22177299	36268760	22860223	47	3063											
SYMPK	8189	broad.mit.edu	37	chr19	46319285	46319285	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgacggagagggagagggggAggaagaggagggggctccca	23	6	0	3	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	SYMPK	NM_004819	exon26	c.T3511C	p.S1171P	AGGGGGAGGAAGA		125	5	0.04	115	3	0.0260869565		104		339	3	0.01				G	46319285	A	G	46319285	3	3	44	1	0	0	0	0	1	0	0	0	15495	304	11	4	321	4	SYMPK	19	46319285	Missense_Mutation	SNP	A	TCGA-2G-AAH0-01A-11D-A42Y-10	10050525	46319285	12809698	48	3064											
SIRPA	140885	mdanderson.org	37	chr20	1876144	1876144	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgggccgctgctctgcctGctgctcgccgcgtcctgcgc	13	19	1	0	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001040022	exon2	c.G51T	p.L17L	CTGCCTGCTGCTC		27	2	0.07	30	0	0				8	0	0				T	1876144	G	T	1876144	2	4	44	1	0	0	0	0	0	0	0	1	14386	1306	46	2		2	SIRPA	20	1876144	Silent	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10		1876144	61149376	49	3065											
PANK2	80025	mdanderson.org	37	chr20	3888898	3888898	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgccactggaggtggagcGtacaaatttgagcaggattt	14	6	0	1	rs78631398	bycluster;by1000genomes	TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_153638	exon2	c.G954A	p.A318A	TGGAGCGTACAAA		33	3	0.09	43	0	0	0.001			46	0	0				A	3888898	G	A	3888898	2	1	44	1	0	0	0	0	0	0	0	1	11463	1132	40	1		1	PANK2	20	3888898	Silent	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10	2012754	3888898	59136622	50	3066											
PAX1	5075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	21687362	21687362	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	aagcaaggagaccctggcatCtttgcctgggagatccgcga	13	11	1	2	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	PAX1_ENST00000398485,NS,carcinoma,0,2	PAX1_ENST00000398485	NM_006192	exon2	c.C573A	p.I191I	TGGCATCTTTGCC		87	21	0.24	59	0	0		0	2	0	0					A	21687362	C	A	21687362	2	1	44	1	0	0	0	0	0	0	0	1	11524	903	32	3		3	PAX1	20	21687362	Silent	SNP	C	TCGA-2G-AAH0-01A-11D-A42Y-10	17798464	21687362	41338158	51	3067											
SLC37A1	54020	mdanderson.org	37	chr21	43959638	43959638	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagtggcatcattggggagCgcctgccgattaggtattac	13	9	2	0	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_018964	exon7	c.C367T	p.R123C	GGGGAGCGCCTGC		143	6	0.04	163	0	0				32	0	0				T	43959638	C	T	43959638	3	4	44	1	0	0	0	0	1	0	0	0	14651	768	27	1	385	1	SLC37A1	21	43959638	Missense_Mutation	SNP	C	TCGA-2G-AAH0-01A-11D-A42Y-10		43959638	4170257	52	3068											
CECR1	51816	broad.mit.edu	37	chr22	17684613	17684613	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accagacaacattttggtttGtgtaaatcacctccgggtgc	9	10	1	1	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	CECR1	NM_017424	exon3	c.C593A	p.T198K	TGGTTTGTGTAAA		151	5	0.03	153	0	0		77		67	0	0				T	17684613	G	T	17684613	3	4	44	1	0	0	0	0	1	0	0	0	3227	1377	48	3	1004	3	CECR1	22	17684613	Missense_Mutation	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10		17684613	33619953	53	3069											
CDC45	8318	mdanderson.org	37	chr22	19484956	19484956	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tggatgctgtccaaggacctGaatgacatgctgtggtacgt	13	8	0	2	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001178010	exon9	c.G735T	p.L245L	GGACCTGAATGAC		54	3	0.06	64	0	0				119	1	0.01				T	19484956	G	T	19484956	2	4	44	1	0	0	0	0	0	0	0	1	3103	1277	45	3		3	CDC45	22	19484956	Silent	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10	1800343	19484956	31819610	54	3070											
PIWIL3	440822	broad.mit.edu	37	chr22	25145722	25145722	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgtgtacccgttaggcccTttttccatctgccctggctg	10	13	1	0	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	PIWIL3	NM_001008496	exon10	c.A1154G	p.K385R	AGGCCCTTTTTCC		128	4	0.03	252	1	0.003968254		115		0	0					C	25145722	T	C	25145722	3	2	44	1	0	0	0	0	1	0	0	0	12006	1609	56	4	1542	4	PIWIL3	22	25145722	Missense_Mutation	SNP	T	TCGA-2G-AAH0-01A-11D-A42Y-10	5660766	25145722	26158844	55	3071											
CDC42EP1	11135	broad.mit.edu	37	chr22	37962631	37962631	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgcagctggtgcggagggTgggggcgcccccccggagga	21	12	0	0	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	CDC42EP1	NM_152243	exon2	c.T275G	p.V92G	GGAGGGTGGGGGC		183	27	0.15	227	12	0.0528634361		53		38	2	0.05				G	37962631	T	G	37962631	3	3	44	1	0	0	0	0	1	0	0	0	3097	1696	59	4	277	4	CDC42EP1	22	37962631	Missense_Mutation	SNP	T	TCGA-2G-AAH0-01A-11D-A42Y-10	12816909	37962631	13341935	56	3072											
CTPS2	56474	broad.mit.edu	37	chrX	16685816	16685816	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcagtttcttgcaaactcTatcactgctagttgcatccc	7	12	3	0	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	CTPS2	NM_001144002	exon12	c.A1221G	p.I407M	AAACTCTATCACT		134	4	0.03	225	0	0		49		6	0	0				C	16685816	T	C	16685816	3	2	44	1	0	0	0	0	1	0	0	0	4047	1512	53	4	567	4	CTPS2	23	16685816	Missense_Mutation	SNP	T	TCGA-2G-AAH0-01A-11D-A42Y-10		16685816	138584744	57	3073											
PHF16	0	broad.mit.edu;bcgsc.ca	37	chrX	46857586	46857586	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccacattaatcctgataGctattacctctttgctgata	4	11	2	2	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	PHF16	NM_001077445	exon4	c.G191T	p.S64I	CTGATAGCTATTA		55	5	0.09	87	0	0		72		1	0	0				T	46857586	G	T	46857586	3	4	44	1	0	0	0	0	1	0	0	0	11874	971	34	2	201	2	PHF16	23	46857586	Missense_Mutation	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10	30171770	46857586	108412974	58	3074											
RBM10	8241	hgsc.bcm.edu	37	chrX	47030582	47030582	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggaggaggaggaggaGgatgaggaggaggaggagaa	25	0	0	2	novel		TCGA-2G-AAH0-01A-11D-A42Y-10	TCGA-2G-AAH0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68054b73-f4e7-4235-bff9-06ddf450b59c	861dd19e-9942-47a4-b167-198541df4754	.	.	NM_001204468	exon4	c.G552T	p.E184D	GGAGGAGGATGAG		60	4	0.07	70	0	0				3	0	0				T	47030582	G	T	47030582	3	4	44	1	0	0	0	0	1	0	0	0	13162	991	35	3	367	3	RBM10	23	47030582	Missense_Mutation	SNP	G	TCGA-2G-AAH0-01A-11D-A42Y-10	172996	47030582	108239978	59	3075											
ACAP3	116983	broad.mit.edu	37	chr1	1229472	1229472	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggttgcgcgtctcacccGgtgcggcccagcagcgtggc	17	14	1	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	ACAP3	NM_030649	exon22	c.C2247A	p.T749T	TCACCCGGTGCGG		129	4	0.03	148	0	0		87		44	0	0				T	1229472	G	T	1229472	2	4	45	1	0	0	0	0	0	0	0	1	120	1103	39	1		1	ACAP3	1	1229472	Silent	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10		1229472	248021149	1	3076											
MIB2	142678	mdanderson.org	37	chr1	1565765	1565765	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaccggcagatggaggaacGcatcacctgccccatctgca	10	15	2	1	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_080875	exon20	c.G3068T	p.R1023L	AGGAACGCATCAC		28	3	0.11	43	0	0				50	0	0				T	1565765	G	T	1565765	3	4	45	1	0	0	0	0	1	0	0	0	9615	1087	38	1	3146	1	MIB2	1	1565765	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	336293	1565765	247684856	2	3077											
SLC2A5	6518	mdanderson.org	37	chr1	9101770	9101770	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcctgtcctgtggtggtgGctttggaacacaaggagggg	17	7	0	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_001135585	exon5	c.C645T	p.S215S	GTGGTGGCTTTGG		45	3	0.07	69	0	0				0	0					A	9101770	G	A	9101770	2	1	45	1	0	0	0	0	0	0	0	1	14602	1194	42	2		2	SLC2A5	1	9101770	Silent	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	7536005	9101770	240148851	3	3078											
CROCC	9696	mdanderson.org	37	chr1	17298008	17298008	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcccggcccagctggagGtggatgcgcagcagcagcag	16	13	0	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_014675	exon36	c.G5833T	p.V1945L	CTGGAGGTGGATG		10	2	0.2	9	0	0				64	0	0				T	17298008	G	T	17298008	3	4	45	1	0	0	0	0	1	0	0	0	3916	1261	44	3	5975	3	CROCC	1	17298008	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	8196238	17298008	231952613	4	3079											
ATP8B2	57198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	154321404	154321404	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cactggctcccggcgctccgGctatgccttctcccatcagg	10	18	2	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_020452	exon28	c.G3482T	p.G1161V	GCTCCGGCTATGC		196	70	0.36	139	0	0				113	32	0.28				T	154321404	G	T	154321404	3	4	45	1	0	0	0	0	1	0	0	0	1193	1203	42	2	3722	2	ATP8B2	1	154321404	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	137023396	154321404	94929217	5	3080											
LYST	1130	broad.mit.edu	37	chr1	235922371	235922371	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tatcaacaagacttggccaaCggccaacagctgcagatccg	9	13	1	2	rs147791378	bycluster;by1000genomes	TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	LYST	NM_000081	exon23	c.G6782A	p.R2261H	GGCCAACGGCCAA		162	4	0.02	128	0	0		370		5	0	0				T	235922371	C	T	235922371	3	4	45	1	0	0	0	0	1	0	0	0	9173	536	19	1	4747	1	LYST	1	235922371	Missense_Mutation	SNP	C	TCGA-2G-AAH2-01A-11D-A42Y-10	81600967	235922371	13328250	6	3081											
COL3A1	1281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	189868987	189868987	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcattatctgtattagggagCtccaggcccacttgggattg	11	9	2	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_000090	exon40	c.C2828T	p.A943V	AGGGAGCTCCAGG		274	98	0.36	289	0	0				12397	6202	0.5				T	189868987	C	T	189868987	3	4	45	1	0	0	0	0	1	0	0	0	3711	797	28	2	2986	2	COL3A1	2	189868987	Missense_Mutation	SNP	C	TCGA-2G-AAH2-01A-11D-A42Y-10		189868987	53330386	7	3082											
ANKZF1	55139	bcgsc.ca;mdanderson.org	37	chr2	220101121	220101121	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctctttctgctccacacGttgcctccaggatcatcgcc	6	17	3	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	ANKZF1	NM_001042410	exon14	c.G2135A	p.R712H	CCACACGTTGCCT		80	5	0.06	113	0	0		45		79	0	0				A	220101121	G	A	220101121	3	1	45	1	0	0	0	0	1	0	0	0	687	1145	40	1	2185	1	ANKZF1	2	220101121	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	30232134	220101121	23098252	8	3083											
SH3BP5	9467	mdanderson.org	37	chr3	15373825	15373825	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcctccagcccctgctccaTcccctcttcctcctcctcct	2	25	1	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_004844	exon1	c.A91G	p.M31V	GCTCCATCCCCTC		25	3	0.12	21	1	0.0476190476				20	0	0				C	15373825	T	C	15373825	3	2	45	1	0	0	0	0	1	0	0	0	14300	1435	50	4	1312	4	SH3BP5	3	15373825	Missense_Mutation	SNP	T	TCGA-2G-AAH2-01A-11D-A42Y-10		15373825	182648605	9	3084											
CLASP2	23122	mdanderson.org	37	chr3	33759452	33759452	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggccgccgacgtccttctGctgcacctgggcgcagaagt	13	16	1	1	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_015097	exon1	c.C43A	p.Q15K	CCTTCTGCTGCAC		14	3	0.21	16	0	0				4	0	0				T	33759452	G	T	33759452	3	4	45	1	0	0	0	0	1	0	0	0	3478	1328	46	2	4629	2	CLASP2	3	33759452	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	18385627	33759452	164262978	10	3085											
EPM2AIP1	9852	mdanderson.org	37	chr3	37034360	37034360	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccgcgcgctcgccgtccGccacataccgctcgtagtat	12	17	0	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	EPM2AIP1,NS,carcinoma,+1,1	EPM2AIP1	NM_014805	exon1	c.C209A	p.A70E	CCGTCCGCCACAT		36	3	0.08	41	0	0		1	1	14	0	0				T	37034360	G	T	37034360	3	4	45	1	0	0	0	0	1	0	0	0	5212	1087	38	1	1618	1	EPM2AIP1	3	37034360	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	3274908	37034360	160988070	11	3086											
XYLB	9942	mdanderson.org	37	chr3	38404464	38404464	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagaagatgaaggcttcgGgcttcgacttctctcaagtc	12	9	2	3	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_005108	exon4	c.G247T	p.G83C	GCTTCGGGCTTCG		42	3	0.07	59	0	0				6	0	0				T	38404464	G	T	38404464	3	4	45	1	0	0	0	0	1	0	0	0	17521	1232	43	3	261	3	XYLB	3	38404464	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	1370104	38404464	159617966	12	3087											
WDR6	11180	broad.mit.edu	37	chr3	49050774	49050774	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacgagacggccagctccagCcagtcctaaggcagaagtcc	11	14	0	2	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	WDR6	NM_018031	exon2	c.C1897T	p.P633S	CTCCAGCCAGTCC		70	3	0.04	79	0	0		79		170	0	0				T	49050774	C	T	49050774	3	4	45	1	0	0	0	0	1	0	0	0	17369	739	26	2	1903	2	WDR6	3	49050774	Missense_Mutation	SNP	C	TCGA-2G-AAH2-01A-11D-A42Y-10	10646310	49050774	148971656	13	3088											
FNDC3B	64778	hgsc.bcm.edu;broad.mit.edu	37	chr3	172065071	172065071	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gagaagatgaagaatccttaGaactcatttatcatgggaca	9	6	2	5	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_001135095	exon21	c.G2434T	p.E812X	TCCTTAGAACTCA		90	5	0.06	87	0	0				32	0	0				T	172065071	G	T	172065071	4	4	45	1	0	0	0	0	0	1	0	0	6002	943	33	3	2512	3	FNDC3B	3	172065071	Nonsense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	123014297	172065071	25957359	14	3089											
MUC4	4585	bcgsc.ca	37	chr3	195509585	195509585	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaagagaggtggcgtgacCtgtggatgctgaggaagtgt	19	4	0	3	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	MUC4	NM_018406	exon2	c.G8866A	p.G2956S	CGTGACCTGTGGA		47	15	0.32	56	3	0.0535714286		1505		0	0					T	195509585	C	T	195509585	3	4	45	1	0	0	0	0	1	0	0	0	10025	681	24	3		3	MUC4	3	195509585	Missense_Mutation	SNP	C	TCGA-2G-AAH2-01A-11D-A42Y-10	23444514	195509585	2512845	15	3090											
MUC4	4585	bcgsc.ca	37	chr3	195510046	195510046	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgacgaagcgtcggtgacaGgaagaggggtggtgtgacct	18	7	0	4	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	MUC4	NM_018406	exon2	c.C8405T	p.P2802L	GTGACAGGAAGAG		23	7	0.3	82	1	0.012195122		1505		0	0					A	195510046	G	A	195510046	3	1	45	1	0	0	0	0	1	0	0	0	10025	1000	35	3		3	MUC4	3	195510046	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	461	195510046	2512384	16	3091											
GABRB1	2560	mdanderson.org	37	chr4	47163290	47163290	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atacactcaccatgtatttcCagcagtcttggaaagacaaa	6	10	2	1	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_000812	exon4	c.C265T	p.Q89X	TATTTCCAGCAGT		37	3	0.08	44	1	0.0227272727				0	0					T	47163290	C	T	47163290	4	4	45	1	0	0	0	0	0	1	0	0	6200	595	21	3	279	3	GABRB1	4	47163290	Nonsense_Mutation	SNP	C	TCGA-2G-AAH2-01A-11D-A42Y-10		47163290	143990986	17	3092											
SLCO4C1	353189	broad.mit.edu	37	chr5	101599428	101599428	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtatatggttagcagttGtcctcccaatacatagccaa	7	9	0	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	SLCO4C1	NM_180991	exon4	c.C859A	p.Q287K	GCAGTTGTCCTCC		265	6	0.02	370	0	0		113		4	0	0				T	101599428	G	T	101599428	3	4	45	1	0	0	0	0	1	0	0	0	14784	1386	48	3	1355	3	SLCO4C1	5	101599428	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10		101599428	79315832	18	3093											
SLC12A2	6558	mdanderson.org	37	chr5	127485691	127485691	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	catgtgtttgttctgcagctGaactgaatgttattgcacca	9	8	1	2	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_001046	exon13	c.G2008T	p.E670X	GCAGCTGAACTGA		52	4	0.08	44	1	0.0227272727				23	0	0				T	127485691	G	T	127485691	4	4	45	1	0	0	0	0	0	1	0	0	14437	1291	45	3	2058	3	SLC12A2	5	127485691	Nonsense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	25886263	127485691	53429569	19	3094											
FARS2	10667	broad.mit.edu	37	chr6	5404837	5404837	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacaaagttctcgctctgcGcataaacaagagacacacac	7	12	2	1	rs370034437	alternate_allele	TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	FARS2,colon,carcinoma,+1,2	FARS2	NM_006567	exon3	c.G675T	p.A225A	CTCTGCGCATAAA		222	4	0.02	173	0	0		33	2	52	0	0				T	5404837	G	T	5404837	2	4	45	1	0	0	0	0	0	0	0	1	5710	1074	38	1		1	FARS2	6	5404837	Silent	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10		5404837	165710230	20	3095											
TAAR2	9287	hgsc.bcm.edu;bcgsc.ca	37	chr6	132945356	132945356	+	Frame_Shift_Del	DEL	T	T	-													catatgtttaagggcctaccTtttttgtctgtgttcttttg					novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	TAAR2	NM_001033080	exon1	c.60delG	p.K20fs	CCTACCTTTTTTG		110	34	0.31	119	0	0		45		0	0					-	132945356	T	-	132945356	7	5	45	1	0	1	0	1	0	0	0	0	15546	1623	56	0	1004	0	TAAR2	6	132945356	Frame_Shift_Del	DEL	T	TCGA-2G-AAH2-01A-11D-A42Y-10	127540519	132945356	38169711	21	3096											
CLIP2	7461	broad.mit.edu	37	chr7	73790841	73790842	+	Frame_Shift_Ins	INS	-	-	G													tgggctgcagcggcactggcINSgggcccagctggaggtgcaa					novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	CLIP2	NM_003388	exon10	c.2110_2111insG	p.R704fs	CACTGGCGGGCCC		96	6	0.06	101	0	0		134		41	0	0				G	73790842	-	G	73790841	7	5	45	1	0	1	1	0	0	0	0	0	3556	759	27	0	2144	0	CLIP2	7	73790841	Frame_Shift_Ins	INS	-	TCGA-2G-AAH2-01A-11D-A42Y-10		73790841	85347822	22	3097											
MGAM	8972	broad.mit.edu;mdanderson.org	37	chr7	141765179	141765179	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgaggggtcgtcatcacccGctccacatttccctcttctg	9	16	4	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	MGAM	NM_004668	exon38	c.G4529A	p.R1510H	TCACCCGCTCCAC		135	5	0.04	113	0	0		767		2	0	0				A	141765179	G	A	141765179	3	1	45	1	0	0	0	0	1	0	0	0	9590	1087	38	1	4675	1	MGAM	7	141765179	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	67974338	141765179	17373484	23	3098											
NOBOX	135935	mdanderson.org	37	chr7	144098624	144098624	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgtcctgagcatgagggGctgagccccggagcagttcc	16	11	0	3	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	NOBOX,NS,carcinoma,0,2	NOBOX	NM_001080413	exon4	c.C359A	p.A120D	TGAGGGGCTGAGC		43	3	0.07	33	0	0		0	2	0	0					T	144098624	G	T	144098624	3	4	45	1	0	0	0	0	1	0	0	0	10558	1203	42	2	1648	2	NOBOX	7	144098624	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	2333445	144098624	15040039	24	3099											
DPP6	1804	mdanderson.org	37	chr7	154598822	154598822	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttcctgctcaagtgcgaaGgtcagctcctgccaccccgt	9	16	3	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_130797	exon16	c.G1666T	p.G556C	TGCGAAGGTCAGC		47	3	0.06	47	0	0				8	0	0				T	154598822	G	T	154598822	3	4	45	1	0	0	0	0	1	0	0	0	4756	1014	35	3	1844	3	DPP6	7	154598822	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	10500198	154598822	4539841	25	3100											
PAXIP1	22976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	154738434	154738434	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccggaaagatggctgcttGgataacacctttcctcctgc	9	12	0	1	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_007349	exon18	c.C3012T	p.S1004S	CTGCTTGGATAAC		153	35	0.23	168	0	0				109	33	0.3				A	154738434	G	A	154738434	2	1	45	1	0	0	0	0	0	0	0	1	11533	1335	47	3		3	PAXIP1	7	154738434	Silent	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	139612	154738434	4400229	26	3101											
SCARA5	286133	mdanderson.org	37	chr8	27779326	27779326	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggttgaggccgcgcagCacgccgcccacgtcggccag	15	16	0	1	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	SCARA5,NS,carcinoma,-2,1	SCARA5	NM_173833	exon4	c.G678A	p.V226V	GCGCAGCACGCCG		36	3	0.08	23	0	0		-2	1	38	0	0				T	27779326	C	T	27779326	2	4	45	1	0	0	0	0	0	0	0	1	13932	697	25	2		2	SCARA5	8	27779326	Silent	SNP	C	TCGA-2G-AAH2-01A-11D-A42Y-10		27779326	118584696	27	3102											
SPTAN1	6709	broad.mit.edu	37	chr9	131343226	131343226	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtcctttccgaggagagagCggcgctgctggagctgtggg	18	10	0	1	rs374524469		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	SPTAN1	NM_003127	exon11	c.C1349T	p.A450V	AGAGAGCGGCGCT		102	4	0.04	100	0	0		266		128	0	0				T	131343226	C	T	131343226	3	4	45	1	0	0	0	0	1	0	0	0	15172	768	27	1	1387	1	SPTAN1	9	131343226	Missense_Mutation	SNP	C	TCGA-2G-AAH2-01A-11D-A42Y-10		131343226	9870205	28	3103											
ARMC3	219681	broad.mit.edu	37	chr10	23297852	23297852	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagcgccaccaaagaaaaAggatggaggtaagaaagtgt	12	5	0	2	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	ARMC3	NM_173081	exon16	c.A2037G	p.K679K	AGAAAAAGGATGG		335	5	0.01	355	0	0		102		0	0					G	23297852	A	G	23297852	2	3	45	1	0	0	0	0	0	0	0	1	951	69	3	4		4	ARMC3	10	23297852	Silent	SNP	A	TCGA-2G-AAH2-01A-11D-A42Y-10		23297852	112236895	29	3104											
SPOCK2	9806	mdanderson.org	37	chr10	73822859	73822859	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acacaccagcagtcaccgctGctctggtcacactgcatctt	7	16	4	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_001244950	exon10	c.C1053A	p.S351R	ACCGCTGCTCTGG		54	3	0.06	97	0	0				49	0	0				T	73822859	G	T	73822859	3	4	45	1	0	0	0	0	1	0	0	0	15135	1310	46	2	229	2	SPOCK2	10	73822859	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	50525007	73822859	61711888	30	3105											
FBXO3	26273	broad.mit.edu	37	chr11	33772131	33772131	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtggatgtacagagctaaGttctggcagaaacgatgtgg	16	5	1	2	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	FBXO3	NM_012175	exon8	c.C886A	p.L296I	AGCTAAGTTCTGG		159	4	0.03	151	0	0		37		33	0	0				T	33772131	G	T	33772131	3	4	45	1	0	0	0	0	1	0	0	0	5771	1029	36	3	554	3	FBXO3	11	33772131	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10		33772131	101234385	31	3106											
XRRA1	143570	mdanderson.org	37	chr11	74559215	74559215	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcatctgatgggcgctctGggctgaggcggacagttgtg	16	10	3	2	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_182969	exon15	c.C1649A	p.P550Q	CGCTCTGGGCTGA		37	3	0.08	44	0	0				14	0	0				T	74559215	G	T	74559215	3	4	45	1	0	0	0	0	1	0	0	0	17520	1348	47	3	749	3	XRRA1	11	74559215	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	40787084	74559215	60447301	32	3107											
DSCAML1	57453	mdanderson.org	37	chr11	117389460	117389460	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctcgctgaaggacgagaCgatgcggggcgtgccatctg	15	11	2	2	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_020693	exon7	c.G1411A	p.V471I	ACGAGACGATGCG		37	3	0.08	41	0	0				0	0					T	117389460	C	T	117389460	3	4	45	1	0	0	0	0	1	0	0	0	4795	536	19	1	5038	1	DSCAML1	11	117389460	Missense_Mutation	SNP	C	TCGA-2G-AAH2-01A-11D-A42Y-10	42830245	117389460	17617056	33	3108											
MLL	4297	mdanderson.org	37	chr11	118373743	118373743	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccatttgagagggcaaaGgaatgatcgagaccaacaca	10	10	0	3	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_001197104	exon27	c.G7136T	p.R2379M	GGCAAAGGAATGA		40	3	0.08	42	0	0				15	0	0				T	118373743	G	T	118373743	3	4	45	1	0	0	0	0	1	0	0	0	9667	1000	35	3	7233	3	MLL	11	118373743	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	984283	118373743	16632773	34	3109											
PRH2	5555	broad.mit.edu	37	chr12	11083460	11083460	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaccccaacagggaggccaTccccctcctcctcaaggaag	8	19	1	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	PRH2	NM_001110213	exon3	c.T300C	p.H100H	AGGCCATCCCCCT		1456	19	0.01	521	5	0.009596929		18		6	0	0				C	11083460	T	C	11083460	2	2	45	1	0	0	0	0	0	0	0	1	12534	1432	50	4		4	PRH2	12	11083460	Silent	SNP	T	TCGA-2G-AAH2-01A-11D-A42Y-10		11083460	122768435	35	3110											
LARP4	113251	broad.mit.edu	37	chr12	50869341	50869341	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaagttatgctgaagtgtgCcagaagccccctaaagagcc	10	10	0	3	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	LARP4	NM_052879	exon16	c.C1869T	p.C623C	AGTGTGCCAGAAG		142	4	0.03	133	0	0		58		64	0	0				T	50869341	C	T	50869341	2	4	45	1	0	0	0	0	0	0	0	1	8668	747	26	2		2	LARP4	12	50869341	Silent	SNP	C	TCGA-2G-AAH2-01A-11D-A42Y-10	39785881	50869341	82982554	36	3111											
NACA	4666	broad.mit.edu	37	chr12	57112386	57112386	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgggggatggagtagctggAcctccttttggggagggagg	20	5	0	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	NACA	.	.	.	.	AGCTGGACCTCCT		62	5	0.08	69	2	0.0289855072		131		0	0					G	57112386	A	G	57112386	2	3	45	1	0	0	0	0	0	0	0	1	10180	262	10	4		4	NACA	12	57112386	Silent	SNP	A	TCGA-2G-AAH2-01A-11D-A42Y-10	6243045	57112386	76739509	37	3112											
RASSF3	283349	mdanderson.org	37	chr12	65004442	65004442	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctacagcagcctggaggaGgacgccgaggacttcttctt	14	11	2	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_178169	exon1	c.G30T	p.E10D	GGAGGAGGACGCC		43	3	0.07	40	0	0				13	0	0				T	65004442	G	T	65004442	3	4	45	1	0	0	0	0	1	0	0	0	13138	991	35	3	32	3	RASSF3	12	65004442	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	7892056	65004442	68847453	38	3113											
C1QTNF9	338872	hgsc.bcm.edu	37	chr13	24895902	24895902	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gttccttctgttcagcagccCgtgacagaggagagtttaaa	11	9	2	3	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	C1QTNF9,bladder,carcinoma,0,1	C1QTNF9	NM_178540	exon4	c.C998A	p.P333Q	GCAGCCCGTGACA		88	6	0.07	109	2	0.0183486239		0	1	1	0	0				A	24895902	C	A	24895902	3	1	45	1	0	0	0	0	1	0	0	0	1983	652	23	1	1008	1	C1QTNF9	13	24895902	Missense_Mutation	SNP	C	TCGA-2G-AAH2-01A-11D-A42Y-10		24895902	90273976	39	3114											
PCCA	5095	mdanderson.org	37	chr13	100959515	100959515	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatcctatgatttcaaaaGttagtttaatttctcaatgg	6	5	2	2	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_001178004	exon15	c.1353+1G>T	.	TCAAAAGTTAGTT		43	3	0.07	53	0	0				0	0					T	100959515	G	T	100959515	5	4	45	1	0	0	0	0	0	0	1	0	11550	1043	36	3	1412	3	PCCA	13	100959515	Splice_Site	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	76063613	100959515	14210363	40	3115											
PCK2	5106	mdanderson.org	37	chr14	24566126	24566126	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actggcatgggctgagccccTtgggctggccatcatgccgt	14	13	1	1	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_001018073	exon2	c.T55C	p.L19L	AGCCCCTTGGGCT		62	3	0.05	50	0	0				49	0	0				C	24566126	T	C	24566126	2	2	45	1	0	0	0	0	0	0	0	1	11628	1606	56	4		4	PCK2	14	24566126	Silent	SNP	T	TCGA-2G-AAH2-01A-11D-A42Y-10		24566126	82783414	41	3116											
MIA2	0	broad.mit.edu	37	chr14	39716705	39716705	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacctcaatccactggttgGtttggtggaggatttacaag	11	7	1	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	MIA2	NM_054024	exon4	c.G927T	p.W309C	TGGTTGGTTTGGT		97	3	0.03	79	0	0		82		1	0	0				T	39716705	G	T	39716705	3	4	45	1	0	0	0	0	1	0	0	0	9612	1270	44	3	941	3	MIA2	14	39716705	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	15150579	39716705	67632835	42	3117											
ATPBD4	89978	mdanderson.org	37	chr15	35703064	35703064	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gataaggctccatttgatccAgggttttcccaagatgctta	9	9	0	2	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	ATPBD4,NS,carcinoma,+1,1	ATPBD4	NM_080650	exon6	c.T539C	p.L180P	TGATCCAGGGTTT		22	3	0.14	36	0	0		1	1	18	0	0				G	35703064	A	G	35703064	3	3	45	1	0	0	0	0	1	0	0	0	1200	188	7	4	280	4	ATPBD4	15	35703064	Missense_Mutation	SNP	A	TCGA-2G-AAH2-01A-11D-A42Y-10		35703064	66828328	43	3118											
CASC5	57082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	40949336	40949336	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagacatgtacaacccagcAtcagttacccaaggtaaagc	8	11	1	1	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_170589	exon24	c.A6659T	p.H2220L	CCCAGCATCAGTT		220	49	0.22	146	0	0				34	14	0.41				T	40949336	A	T	40949336	3	4	45	1	0	0	0	0	1	0	0	0	2681	217	8	5	6749	5	CASC5	15	40949336	Missense_Mutation	SNP	A	TCGA-2G-AAH2-01A-11D-A42Y-10	5246272	40949336	61582056	44	3119											
IGFALS	3483	broad.mit.edu	37	chr16	1840814	1840814	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cagccacagtcccaggggttAccctccagccacaggcgctc	10	18	0	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	IGFALS	NM_001146006	exon2	c.T1719G	p.G573G	GGGGTTACCCTCC		56	13	0.23	52	8	0.1538461538		29		2	0	0				C	1840814	A	C	1840814	2	2	45	1	0	0	0	0	0	0	0	1	7620	378	14	4		4	IGFALS	16	1840814	Silent	SNP	A	TCGA-2G-AAH2-01A-11D-A42Y-10		1840814	88513939	45	3120											
MT3	4504	bcgsc.ca	37	chr16	56623785	56623785	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtcgccctctctaggtgGctcctgcacctgcgcggact	13	16	1	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	MT3	NM_005954	exon2	c.G35T	p.G12V	TAGGTGGCTCCTG		146	6	0.04	56	0	0		6		1	0	0				T	56623785	G	T	56623785	3	4	45	1	0	0	0	0	1	0	0	0	9953	1203	42	2	41	2	MT3	16	56623785	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	54782971	56623785	33730968	46	3121											
CMTM2	146225	broad.mit.edu	37	chr16	66613759	66613759	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagcaataaagagttctgGctcttggggcacgctgagat	13	8	2	2	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	CMTM2	NM_001199317	exon1	c.G249T	p.W83C	GTTCTGGCTCTTG		228	4	0.02	82	0	0		33		1	0	0				T	66613759	G	T	66613759	3	4	45	1	0	0	0	0	1	0	0	0	3606	1212	42	2	251	2	CMTM2	16	66613759	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	9989974	66613759	23740994	47	3122											
PKD1L2	114780	broad.mit.edu	37	chr16	81188170	81188170	+	RNA	DEL	T	T	-													gtacatttttttcttcttccTtttttttttttgttttcaga					novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	PKD1L2	.	.	.	.	TCTTCCTTTTTTT		9	5	0.56	6	0	0		361		0	0					-	81188170	T	-	81188170	6	5	45	0	1	1	0	1	0	0	0	0	12012	1624	56	0		0	PKD1L2	16	81188170	RNA	DEL	T	TCGA-2G-AAH2-01A-11D-A42Y-10	14574411	81188170	9166583	48	3123											
NCOR1	9611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	15973655	15973655	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttaccactgacgtgtgccggGaacgcacggtctcgcctgct	12	14	1	1	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_001190440	exon30	c.C4385T	p.S1462F	TGCCGGGAACGCA		186	63	0.34	184	0	0				54	21	0.39				A	15973655	G	A	15973655	3	1	45	1	0	0	0	0	1	0	0	0	10281	1174	41	3	3049	3	NCOR1	17	15973655	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10		15973655	65221555	49	3124											
MED1	5469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	37571338	37571338	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgcatccgacagccctttGtagagtttacagctcacatg	9	11	1	1	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_004774	exon16	c.C1440T	p.Y480Y	CCCTTTGTAGAGT		198	57	0.29	165	0	0				25	13	0.52				A	37571338	G	A	37571338	2	1	45	1	0	0	0	0	0	0	0	1	9474	1372	48	3		3	MED1	17	37571338	Silent	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	21597683	37571338	43623872	50	3125											
CNP	1267	mdanderson.org	37	chr17	40125905	40125905	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcccacgcaaggtagccGgaaggggggcgccttgcagt	17	11	0	0	rs372142717	alternate_allele	TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_033133	exon4	c.G1229T	p.R410L	GTAGCCGGAAGGG		17	2	0.12	22	0	0				349	0	0				T	40125905	G	T	40125905	3	4	45	1	0	0	0	0	1	0	0	0	3649	1116	39	1	1243	1	CNP	17	40125905	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	2554567	40125905	41069305	51	3126											
ITGA2B	3674	mdanderson.org	37	chr17	42463057	42463057	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcagtcttttctaggaCgttccagtgctgccaggggg	12	12	3	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_000419	exon4	c.G436A	p.V146I	CTAGGACGTTCCA		41	3	0.07	40	0	0				0	0					T	42463057	C	T	42463057	3	4	45	1	0	0	0	0	1	0	0	0	7919	536	19	1	2791	1	ITGA2B	17	42463057	Missense_Mutation	SNP	C	TCGA-2G-AAH2-01A-11D-A42Y-10	2337152	42463057	38732153	52	3127											
SETBP1	26040	mdanderson.org	37	chr18	42529989	42529989	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtccaccaactctgacagCggacccgtcactcagaattg	9	14	3	2	rs149073567	bycluster;byfrequency;by1000genomes	TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	SETBP1,NS,carcinoma,0,1	SETBP1	NM_015559	exon4	c.C684T	p.S228S	TGACAGCGGACCC		50	3	0.06	80	0	0	0	0	1	13	0	0				T	42529989	C	T	42529989	2	4	45	1	0	0	0	0	0	0	0	1	14182	767	27	1		1	SETBP1	18	42529989	Silent	SNP	C	TCGA-2G-AAH2-01A-11D-A42Y-10		42529989	35547259	53	3128											
SALL3	27164	mdanderson.org	37	chr18	76753274	76753274	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgccgcttctgcgccaaggTcttcggcagcgacagcgcgc	13	15	2	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_171999	exon2	c.T1283C	p.V428A	CCAAGGTCTTCGG		22	2	0.09	39	0	0				4	0	0				C	76753274	T	C	76753274	3	2	45	1	0	0	0	0	1	0	0	0	13863	1667	58	4	1289	4	SALL3	18	76753274	Missense_Mutation	SNP	T	TCGA-2G-AAH2-01A-11D-A42Y-10	34223285	76753274	1323974	54	3129											
ATP9B	374868	broad.mit.edu	37	chr18	77013493	77013493	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atttgtgggtccatggtaccGcaatctttttcggttccttc	9	10	1	0	rs371121796		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	ATP9B	NM_198531	exon12	c.G1220A	p.R407H	GGTACCGCAATCT		181	4	0.02	172	0	0		96		13	0	0				A	77013493	G	A	77013493	3	1	45	1	0	0	0	0	1	0	0	0	1197	1087	38	1	1266	1	ATP9B	18	77013493	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	260219	77013493	1063755	55	3130											
FAM108A1	81926	mdanderson.org	37	chr19	1877409	1877409	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacgggagacgtgatcttGgacaccttctcgatgctgcg	13	11	2	2	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_031213	exon6	c.C876A	p.S292S	GATCTTGGACACC		32	3	0.09	17	0	0				133	0	0				T	1877409	G	T	1877409	2	4	45	1	0	0	0	0	0	0	0	1	5422	1335	47	3		3	FAM108A1	19	1877409	Silent	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10		1877409	57251574	56	3131											
TMED1	11018	mdanderson.org	37	chr19	10946841	10946841	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attagtagccacaaggccagGgctagggccgcgccggccgc	15	14	0	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_006858	exon1	c.C27A	p.A9A	GGCCAGGGCTAGG		53	3	0.06	32	0	0				88	0	0				T	10946841	G	T	10946841	2	4	45	1	0	0	0	0	0	0	0	1	16061	1219	43	3		3	TMED1	19	10946841	Silent	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	9069432	10946841	48182142	57	3132											
PRKCSH	5589	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr19	11558370	11558370	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggaggaggaggaggaGgaagaagaggctgaagaaga	22	1	0	5	rs77563879	bycluster	TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	PRKCSH,caecum,carcinoma,0,1	PRKCSH	NM_001001329	exon11	c.G966A	p.E322E	GGAGGAGGAAGAA		81	6	0.07	67	0	0		0	1	55	0	0				A	11558370	G	A	11558370	2	1	45	1	0	0	0	0	0	0	0	1	12567	991	35	3		3	PRKCSH	19	11558370	Silent	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	611529	11558370	47570613	58	3133											
MAN2B1	4125	mdanderson.org	37	chr19	12774209	12774209	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgagggtcctccaccagCggctgatcgacacacagcac	11	16	0	1	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_000528	exon6	c.G831A	p.P277P	CACCAGCGGCTGA		89	4	0.04	80	0	0				227	0	0				T	12774209	C	T	12774209	2	4	45	1	0	0	0	0	0	0	0	1	9265	755	27	1		1	MAN2B1	19	12774209	Silent	SNP	C	TCGA-2G-AAH2-01A-11D-A42Y-10	1215839	12774209	46354774	59	3134											
ZNF676	163223	ucsc.edu	37	chr19	22363172	22363172	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgccacattcttcacatttGtagggtttctctccagcatg	7	11	3	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	ZNF676	NM_001001411	exon3	c.C1347T	p.Y449Y	ACATTTGTAGGGT		85	6	0.07	64	2	0.03125		146		24	5	0.21				A	22363172	G	A	22363172	2	1	45	1	0	0	0	0	0	0	0	1	18139	1372	48	3		3	ZNF676	19	22363172	Silent	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	9588963	22363172	36765811	60	3135											
RHPN2	85415	mdanderson.org	37	chr19	33517427	33517427	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tactctgtgttctgatagacGcccaccgagatgttcagccc	9	13	3	3	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_033103	exon3	c.C297T	p.G99G	ATAGACGCCCACC		24	4	0.17	35	0	0				22	0	0				A	33517427	G	A	33517427	2	1	45	1	0	0	0	0	0	0	0	1	13400	1074	38	1		1	RHPN2	19	33517427	Silent	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	11154255	33517427	25611556	61	3136											
HRC	3270	hgsc.bcm.edu	37	chr19	49657886	49657886	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatactcagtggaggcctcCtcttcctcctcctcctcctc	5	20	2	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_002152	exon1	c.G609A	p.E203E	GGCCTCCTCTTCC		90	9	0.1	61	0	0				5	2	0.4				T	49657886	C	T	49657886	2	4	45	1	0	0	0	0	0	0	0	1	7392	680	24	3		3	HRC	19	49657886	Silent	SNP	C	TCGA-2G-AAH2-01A-11D-A42Y-10	16140459	49657886	9471097	62	3137			1	6		2	2	31	N	T_C	6.492721e-05
HRC	3270	hgsc.bcm.edu	37	chr19	49657916	49657916	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctcctcctcTtctccttcatcatcttcccc	0	23	5	0	rs7409255		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_002152	exon1	c.A579G	p.E193E	CTCCTCTTCTCCT		94	8	0.09	68	0	0				5	0	0				C	49657916	T	C	49657916	2	2	45	1	0	0	0	0	0	0	0	1	7392	1606	56	4		4	HRC	19	49657916	Silent	SNP	T	TCGA-2G-AAH2-01A-11D-A42Y-10	30	49657916	9471067	63	3138			1	6		2	2	31	N	T_C	6.492721e-05
BAGE	85319	broad.mit.edu	37	chr21	11058613	11058614	+	RNA	INS	-	-	A													aaacctaaagatttttttttINSaaagcaaatagtaatatggt					rs377480117	bycluster	TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	.	.	.	.	TTTTTTTAAAGCA		7	3	0.43	11	0	0				0	0					A	11058614	-	A	11058613	6	5	45	0	1	1	1	0	0	0	0	0	1289	1769	61	0		0	BAGE	21	11058613	RNA	INS	-	TCGA-2G-AAH2-01A-11D-A42Y-10		11058613	37071282	64	3139											
KRTAP10-10	353333	mdanderson.org	37	chr21	46058034	46058034	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttccctcctctgccgccccGtgtgctcccgccctgcctgc	8	22	1	0	rs1785472	by2hit2allele	TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_181688	exon1	c.G700A	p.V234M	CGCCCCGTGTGCT		88	4	0.05	67	1	0.0149253731				0	0					A	46058034	G	A	46058034	3	1	45	1	0	0	0	0	1	0	0	0	8548	1145	40	1	702	1	KRTAP10-10	21	46058034	Missense_Mutation	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10	34999421	46058034	2071861	65	3140											
TRMU	55687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	46749663	46749663	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagaaactgtctttctgtaGgttggttcctgtataccttg	11	7	2	1	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	NM_018006	exon8	c.773-1G>C	.	TCTGTAGGTTGGT		319	91	0.29	228	0	0				7	2	0.29				C	46749663	G	C	46749663	5	2	45	1	0	0	0	0	0	0	1	0	16631	1014	35	5	802	5	TRMU	22	46749663	Splice_Site	SNP	G	TCGA-2G-AAH2-01A-11D-A42Y-10		46749663	4554903	66	3141											
MAPK8IP2	23542	mdanderson.org	37	chr22	51044145	51044145	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcccatgcggtgcccggccCtgccaaggacctgctgggtg	15	16	0	0	novel		TCGA-2G-AAH2-01A-11D-A42Y-10	TCGA-2G-AAH2-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b3505fa2-6cd0-48bd-8f11-64c72826ca4d	a86f171b-80a2-45db-b232-a1b53d59d095	.	.	.	.	.	.	CCGGCCCTGCCAA		45	3	0.07	40	0	0				10	0	0				T	51044145	C	T	51044145	3	4	45	1	0	0	0	0	1	0	0	0	9334	681	24	3	2112	3	MAPK8IP2	22	51044145	Missense_Mutation	SNP	C	TCGA-2G-AAH2-01A-11D-A42Y-10	4294482	51044145	260421	67	3142											
GLTPD1	80772	mdanderson.org	37	chr1	1262874	1262874	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agctgttcctggagggcctgCgtaccagccccgaggacgca	14	14	0	0	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001029885	exon3	c.C376T	p.R126C	GGCCTGCGTACCA		23	3	0.13	21	0	0				22	0	0				T	1262874	C	T	1262874	3	4	46	1	0	0	0	0	1	0	0	0	6513	768	27	1	382	1	GLTPD1	1	1262874	Missense_Mutation	SNP	C	TCGA-2G-AAH3-01A-11D-A42Y-10		1262874	247987747	1	3143											
KIAA1751	85452	mdanderson.org	37	chr1	1920330	1920330	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgatcctccgagttacctGctgtgtcccgggtccacgtc	10	17	0	0	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001080484	exon3	c.C150T	p.S50S	TTACCTGCTGTGT		19	2	0.11	23	0	0				0	0					A	1920330	G	A	1920330	2	1	46	1	0	0	0	0	0	0	0	1	8297	1310	46	2		2	KIAA1751	1	1920330	Silent	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	657456	1920330	247330291	2	3144											
KIF1B	23095	broad.mit.edu	37	chr1	10397530	10397530	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgccttcactttccgaGtaacagtgttgcaggccagt	11	11	1	0	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	KIF1B	NM_015074	exon29	c.G3223T	p.V1075L	TTCCGAGTAACAG		197	4	0.02	167	0	0		242		71	0	0				T	10397530	G	T	10397530	3	4	46	1	0	0	0	0	1	0	0	0	8325	1029	36	3	4822	3	KIF1B	1	10397530	Missense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	8477200	10397530	238853091	3	3145											
MFN2	9927	broad.mit.edu	37	chr1	12069691	12069691	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catctgtgtcagcaagttgaCgtcacccgggagaacctgga	12	11	3	2	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	MFN2	NM_014874	exon18	c.C2112T	p.D704D	AGTTGACGTCACC		164	4	0.02	144	1	0.0069444444		83		155	0	0				T	12069691	C	T	12069691	2	4	46	1	0	0	0	0	0	0	0	1	9573	535	19	1		1	MFN2	1	12069691	Silent	SNP	C	TCGA-2G-AAH3-01A-11D-A42Y-10	1672161	12069691	237180930	4	3146											
NASP	4678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	46073158	46073158	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tatggatataagtaaatctgCagaggagccacaggaaaaag	11	5	1	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_002482	exon6	c.C575T	p.A192V	AATCTGCAGAGGA		196	47	0.24	179	0	0				531	151	0.28				T	46073158	C	T	46073158	3	4	46	1	0	0	0	0	1	0	0	0	10219	710	25	2	674	2	NASP	1	46073158	Missense_Mutation	SNP	C	TCGA-2G-AAH3-01A-11D-A42Y-10	34003467	46073158	203177463	5	3147											
C1orf173	127254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	75038768	75038768	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	catcaaggcttgcttttcagGagcctcatctttactcagac	7	12	5	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	C1orf173,NS,malignant_melanoma,0,1	C1orf173	NM_001002912	exon14	c.C2626G	p.P876A	TTTCAGGAGCCTC		103	21	0.2	109	0	0		0	1	0	0					C	75038768	G	C	75038768	3	2	46	1	0	0	0	0	1	0	0	0	2027	1174	41	5	1970	5	C1orf173	1	75038768	Missense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	28965610	75038768	174211853	6	3148											
ZNF644	84146	broad.mit.edu	37	chr1	91403170	91403170	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatcttttgaggagaaataGcagaattcctttcttctccc	8	9	3	3	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	ZNF644	NM_201269	exon4	c.C3560A	p.A1187D	GAAATAGCAGAAT		192	4	0.02	172	0	0		120		81	0	0				T	91403170	G	T	91403170	3	4	46	1	0	0	0	0	1	0	0	0	18116	971	34	2	435	2	ZNF644	1	91403170	Missense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	16364402	91403170	157847451	7	3149											
VCAM1	7412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	101186170	101186170	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagatagatagtccactgaAtgggaaggtgacgaatgagg	14	6	0	5	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001078	exon2	c.A203T	p.N68I	CACTGAATGGGAA		196	50	0.26	189	0	0				12	0	0				T	101186170	A	T	101186170	3	4	46	1	0	0	0	0	1	0	0	0	17196	101	4	5	209	5	VCAM1	1	101186170	Missense_Mutation	SNP	A	TCGA-2G-AAH3-01A-11D-A42Y-10	9783000	101186170	148064451	8	3150											
GPSM2	29899	ucsc.edu	37	chr1	109461327	109461327	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tttgtcaacagactgaagggGaaaaaatacaaaacgaattc	8	6	1	2	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	GPSM2	NM_013296	exon12	c.G1356A	p.G452G	GAAGGGGAAAAAA		260	2	0.01	221	0	0		56		52	9	0.17	rescued with RNA-seq			A	109461327	G	A	109461327	2	1	46	1	0	0	0	0	0	0	0	1	6775	1161	41	3		3	GPSM2	1	109461327	Silent	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	8275157	109461327	139789294	9	3151											
LOR	4014	broad.mit.edu	37	chr1	153233515	153233515	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggtggcggcggcagcggCggtggtggctgcggcttctt	22	10	1	0	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	LOR	NM_000427	exon2	c.C90T	p.G30G	CAGCGGCGGTGGT		81	3	0.04	74	0	0		19		0	0					T	153233515	C	T	153233515	2	4	46	1	0	0	0	0	0	0	0	1	8941	755	27	1		1	LOR	1	153233515	Silent	SNP	C	TCGA-2G-AAH3-01A-11D-A42Y-10	43772188	153233515	96017106	10	3152											
RAB10	10890	broad.mit.edu	37	chr2	26257554	26257554	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agtggggaagacctgcgtccTttttcgtttttcggatgatg	13	7	0	2	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	RAB10	NM_016131	exon1	c.T77C	p.L26P	GCGTCCTTTTTCG		254	3	0.01	214	0	0		14		327	0	0				C	26257554	T	C	26257554	3	2	46	1	0	0	0	0	1	0	0	0	12941	1609	56	4	79	4	RAB10	2	26257554	Missense_Mutation	SNP	T	TCGA-2G-AAH3-01A-11D-A42Y-10		26257554	216941819	11	3153											
SCN9A	6335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	167055703	167055703	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggactttgttgggttttgCtatgagaagaggaggatcca	14	5	0	2	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_002977	exon27	c.G5413A	p.A1805T	GTTTTGCTATGAG		225	9	0.04	230	0	0				3	0	0				T	167055703	C	T	167055703	3	4	46	1	0	0	0	0	1	0	0	0	13978	797	28	2	524	2	SCN9A	2	167055703	Missense_Mutation	SNP	C	TCGA-2G-AAH3-01A-11D-A42Y-10	140798149	167055703	76143670	12	3154											
CCRL1	51554	mdanderson.org	37	chr3	132321047	132321047	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaagcaataaaaaaaaaaCaaactataataagcttttct	2	5	1	0	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	.	.	.	.	AAAAAACAAACTA		246	14	0.06	337	7	0.0207715134				1	0	0				A	132321047	C	A	132321047	1	1	46	0	1	0	0	0	0	0	0	0	2971	493	17	3		3	CCRL1	3	132321047	RNA	SNP	C	TCGA-2G-AAH3-01A-11D-A42Y-10		132321047	65701383	13	3155											
SHOX2	6474	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	157823772	157823772	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tccttcttctccttcactttCtggtcaaaagacttggagac	6	12	5	2	rs376757024		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_003030	exon1	c.G42C	p.Q14H	CACTTTCTGGTCA		273	14	0.05	354	0	0				0	0					G	157823772	C	G	157823772	3	3	46	1	0	0	0	0	1	0	0	0	14343	912	32	5	1049	5	SHOX2	3	157823772	Missense_Mutation	SNP	C	TCGA-2G-AAH3-01A-11D-A42Y-10	25502725	157823772	40198658	14	3156											
IQCJ	654502	broad.mit.edu	37	chr3	158983108	158983108	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggtgattcttctctacctTgaccagcttgccagacccac	7	14	2	3	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	IQCJ	NM_001042705	exon5	c.T396C	p.L132L	CTACCTTGACCAG		142	5	0.04	143	1	0.006993007		28		0	0					C	158983108	T	C	158983108	2	2	46	1	0	0	0	0	0	0	0	1	7855	1799	63	4		4	IQCJ	3	158983108	Silent	SNP	T	TCGA-2G-AAH3-01A-11D-A42Y-10	1159336	158983108	39039322	15	3157											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	55602664	55602664	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgttgtgcttctattacagGctcgactacctgtgaagtgg	11	9	1	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	KIT,caecum,carcinoma,0,3	KIT	NM_000222	exon18	c.G2485C	p.A829P	TTACAGGCTCGAC		77	23	0.3	90	0	0		0	3	603	242	0.4				C	55602664	G	C	55602664	3	2	46	1	0	0	0	0	1	0	0	0	8371	1217	42	5	2555	5	KIT	4	55602664	Missense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10		55602664	135551612	16	3158											
LRBA	987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	151837605	151837605	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gttgaaagccttttccttttGactttattgatgttacaatc	6	7	0	3	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_006726	exon7	c.C842T	p.S281L	CCTTTTGACTTTA		194	12	0.06	232	0	0				14	1	0.07				A	151837605	G	A	151837605	3	1	46	1	0	0	0	0	1	0	0	0	8975	1294	45	3	7957	3	LRBA	4	151837605	Missense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	96234941	151837605	39316671	17	3159											
SNX25	83891	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	186231964	186231964	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gagggggaagggcctcaaagCcagaaggtagaactttatag	15	6	1	2	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	SNX25	NM_031953	exon7	c.C846A	p.S282R	TCAAAGCCAGAAG		169	41	0.24	208	1	0.0048076923		100		21	2	0.1				A	186231964	C	A	186231964	3	1	46	1	0	0	0	0	1	0	0	0	14949	738	26	2	868	2	SNX25	4	186231964	Missense_Mutation	SNP	C	TCGA-2G-AAH3-01A-11D-A42Y-10	34394359	186231964	4922312	18	3160											
MAP1B	4131	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	71489724	71489724	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	actaagcaccacccatcctgCcaacaaagccagcttaaccc	4	18	0	0	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	MAP1B	NM_005909	exon5	c.C542G	p.A181G	ATCCTGCCAACAA		73	17	0.23	82	0	0		243		12	4	0.33				G	71489724	C	G	71489724	3	3	46	1	0	0	0	0	1	0	0	0	9277	739	26	5	560	5	MAP1B	5	71489724	Missense_Mutation	SNP	C	TCGA-2G-AAH3-01A-11D-A42Y-10		71489724	109425536	19	3161											
DHFR	1719	hgsc.bcm.edu;broad.mit.edu	37	chr5	79950296	79950296	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagcgacgatgcagtttaGcgaaccaaccatgacagcag	10	12	0	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_000791	exon1	c.C13A	p.L5I	AGTTTAGCGAACC		128	6	0.05	160	0	0				1	0	0				T	79950296	G	T	79950296	3	4	46	1	0	0	0	0	1	0	0	0	4509	962	34	2	574	2	DHFR	5	79950296	Missense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	8460572	79950296	100964964	20	3162											
SLC23A1	9963	mdanderson.org	37	chr5	138714360	138714360	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gatgatgcagcaaatgccttCggtgaagatgcccctgtaag	12	9	0	3	rs115023155	by1000genomes	TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_152685	exon10	c.G1099A	p.E367K	TGCCTTCGGTGAA		103	5	0.05	132	0	0	0.006			1	0	0				T	138714360	C	T	138714360	3	4	46	1	0	0	0	0	1	0	0	0	14516	893	31	1	729	1	SLC23A1	5	138714360	Missense_Mutation	SNP	C	TCGA-2G-AAH3-01A-11D-A42Y-10	58764064	138714360	42200900	21	3163											
ADAM19	8728	broad.mit.edu	37	chr5	156936422	156936422	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcacacatgttcccgtgGgtccacacttccaagcccac	6	17	1	0	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	ADAM19	NM_033274	exon9	c.C792A	p.T264T	CCCGTGGGTCCAC		158	4	0.03	162	0	0		216		4	0	0				T	156936422	G	T	156936422	2	4	46	1	0	0	0	0	0	0	0	1	239	1219	43	3		3	ADAM19	5	156936422	Silent	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	18222062	156936422	23978838	22	3164											
MSX2	4488	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	174156363	174156363	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aatctggttccagaaccgaaGggccaaggcgaaaagactgc	12	10	1	2	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	MSX2	NM_002449	exon2	c.G581C	p.R194T	ACCGAAGGGCCAA		174	24	0.14	191	0	0		24		87	23	0.26				C	174156363	G	C	174156363	3	2	46	1	0	0	0	0	1	0	0	0	9943	1000	35	5	587	5	MSX2	5	174156363	Missense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	17219941	174156363	6758897	23	3165											
POU5F1	5460	broad.mit.edu	37	chr6	31138067	31138067	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gacggtgcagggctccggggAggccccatcggagttgctct	17	12	1	0	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	POU5F1	NM_002701	exon1	c.T331C	p.S111P	CCGGGGAGGCCCC		118	3	0.03	95	3	0.0315789474		25		5002	4	0				G	31138067	A	G	31138067	3	3	46	1	0	0	0	0	1	0	0	0	12326	304	11	4	771	4	POU5F1	6	31138067	Missense_Mutation	SNP	A	TCGA-2G-AAH3-01A-11D-A42Y-10		31138067	139977000	24	3166											
LRFN2	57497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	40360629	40360629	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	caggttgttgaccacgaaggCcttgttggaggctgggatca	15	8	1	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_020737	exon3	c.G1423T	p.A475S	CGAAGGCCTTGTT		61	16	0.26	69	0	0				0	0					A	40360629	C	A	40360629	3	1	46	1	0	0	0	0	1	0	0	0	8982	739	26	2	950	2	LRFN2	6	40360629	Missense_Mutation	SNP	C	TCGA-2G-AAH3-01A-11D-A42Y-10	9222562	40360629	130754438	25	3167											
ZNF451	26036	broad.mit.edu	37	chr6	57013354	57013354	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	acccagtgtggctcattttgGatctgaaaaatcaaacctgt	8	9	3	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	ZNF451	NM_001031623	exon10	c.G2471T	p.G824V	ATTTTGGATCTGA		241	5	0.02	227	1	0.0044052863		181		64	0	0				T	57013354	G	T	57013354	3	4	46	1	0	0	0	0	1	0	0	0	17978	1174	41	3	2509	3	ZNF451	6	57013354	Missense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	16652725	57013354	114101713	26	3168											
KLHL32	114792	hgsc.bcm.edu	37	chr6	97424037	97424037	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggcagtcctagcagcatGcagtgactatttccgggtaa	11	10	0	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_052904	exon3	c.G188T	p.C63F	CAGCATGCAGTGA		77	4	0.05	89	0	0				0	0					T	97424037	G	T	97424037	3	4	46	1	0	0	0	0	1	0	0	0	8428	1319	46	2	194	2	KLHL32	6	97424037	Missense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	40410683	97424037	73691030	27	3169											
PBOV1	59351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	138539259	138539259	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaacatttcattgaggaacCtttcatggtcaagtgtgtct	10	7	4	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_021635	exon1	c.G274T	p.G92C	AGGAACCTTTCAT		189	36	0.19	153	0	0				0	0					A	138539259	C	A	138539259	3	1	46	1	0	0	0	0	1	0	0	0	11536	681	24	3	137	3	PBOV1	6	138539259	Missense_Mutation	SNP	C	TCGA-2G-AAH3-01A-11D-A42Y-10	41115222	138539259	32575808	28	3170											
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	77755017	77755017	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gagactgttcttaccctcatCctcccattccttattgctgg	6	14	2	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_012301	exon20	c.G3561C	p.R1187S	CCTCATCCTCCCA		272	24	0.09	176	0	0				0	0					G	77755017	C	G	77755017	3	3	46	1	0	0	0	0	1	0	0	0	9240	854	30	5	818	5	MAGI2	7	77755017	Missense_Mutation	SNP	C	TCGA-2G-AAH3-01A-11D-A42Y-10		77755017	81383646	29	3171											
KLRG2	346689	mdanderson.org	37	chr7	139168165	139168165	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggcacgcgcggggacccgGggcgaggcgaaggcggcttt	21	12	0	0	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_198508	exon1	c.C224A	p.P75H	GACCCGGGGCGAG		22	2	0.09	14	0	0				88	0	0				T	139168165	G	T	139168165	3	4	46	1	0	0	0	0	1	0	0	0	8464	1232	43	3	1025	3	KLRG2	7	139168165	Missense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	61413148	139168165	19970498	30	3172											
RP1L1	94137	broad.mit.edu	37	chr8	10465179	10465179	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctctacaccttctgactcAggctgggcctccccttcagc	8	18	4	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	RP1L1	NM_178857	exon4	c.T6429A	p.P2143P	TGACTCAGGCTGG		178	8	0.04	148	1	0.0067567568		453		0	0					T	10465179	A	T	10465179	2	4	46	1	0	0	0	0	0	0	0	1	13584	175	7	5		5	RP1L1	8	10465179	Silent	SNP	A	TCGA-2G-AAH3-01A-11D-A42Y-10		10465179	135898843	31	3173											
PHYHIP	9796	broad.mit.edu	37	chr8	22079280	22079280	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggagtcctgcgggggctgGcccgtgttgaactccgtgtt	18	10	0	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	PHYHIP	NM_014759	exon5	c.C579A	p.G193G	GGGCTGGCCCGTG		147	6	0.04	106	1	0.0094339623		24		3	0	0				T	22079280	G	T	22079280	2	4	46	1	0	0	0	0	0	0	0	1	11913	1190	42	2		2	PHYHIP	8	22079280	Silent	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	11614101	22079280	124284742	32	3174											
FAM83H	286077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	144810755	144810755	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcataggcgtccatgcgGgccagggccgcggccgaggg	20	12	0	0	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_198488	exon5	c.C876A	p.A292A	CATGCGGGCCAGG		56	5	0.09	48	0	0				1	0	0				T	144810755	G	T	144810755	2	4	46	1	0	0	0	0	0	0	0	1	5671	1219	43	3		3	FAM83H	8	144810755	Silent	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	122731475	144810755	1553267	33	3175											
EXOSC4	54512	mdanderson.org	37	chr8	145135472	145135472	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgagtggtccggcagcatGtgcgtgaggcctctatcttg	14	10	2	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_019037	exon3	c.G706T	p.V236L	CAGCATGTGCGTG		12	2	0.17	12	0	0				50	0	0				T	145135472	G	T	145135472	3	4	46	1	0	0	0	0	1	0	0	0	5344	1377	48	3	716	3	EXOSC4	8	145135472	Missense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	324717	145135472	1228550	34	3176											
MPDZ	8777	broad.mit.edu	37	chr9	13217201	13217201	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aattttttatctccaatgtaGccagcaatggtaattcctaa	5	8	1	0	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	MPDZ	NM_003829	exon9	c.C1179A	p.G393G	AATGTAGCCAGCA		247	6	0.02	212	1	0.0047169811		324		28	0	0				T	13217201	G	T	13217201	2	4	46	1	0	0	0	0	0	0	0	1	9770	958	34	2		2	MPDZ	9	13217201	Silent	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10		13217201	127996230	35	3177											
C9orf96	169436	mdanderson.org	37	chr9	136270539	136270539	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaccacgtctgggggactGgaatagatgtttgtatggaa	14	6	1	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	C9orf96_ENST00000371957,NS,carcinoma,+1,1	C9orf96_ENST00000371957	NM_153710	exon18	c.G2037T	p.L679L	GGGACTGGAATAG		24	4	0.17	8	0	0		1	1	1	0	0				T	136270539	G	T	136270539	2	4	46	1	0	0	0	0	0	0	0	1	2526	1335	47	3		3	C9orf96	9	136270539	Silent	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	123053338	136270539	4942892	36	3178											
NCOA4	8031	broad.mit.edu	37	chr10	51585536	51585536	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggtcctgccaggaaagaaGatgggcaacctcagccagtt	13	10	1	2	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	NCOA4	NM_001145261	exon9	c.G1683T	p.K561N	AAAGAAGATGGGC		62	5	0.08	65	0	0		58		265	0	0				T	51585536	G	T	51585536	3	4	46	1	0	0	0	0	1	0	0	0	10277	933	33	3	1713	3	NCOA4	10	51585536	Missense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10		51585536	83949211	37	3179											
LRRTM3	347731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	68686864	68686864	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	caagtatatctgctggttgcTtaggtttgtcccttcgctat	9	9	1	0	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_178011	exon2	c.T190A	p.L64I	GGTTGCTTAGGTT		69	11	0.16	95	0	0				0	0					A	68686864	T	A	68686864	3	1	46	1	0	0	0	0	1	0	0	0	9085	1606	56	5	196	5	LRRTM3	10	68686864	Missense_Mutation	SNP	T	TCGA-2G-AAH3-01A-11D-A42Y-10	17101328	68686864	66847883	38	3180											
AP2A2	161	mdanderson.org	37	chr11	993799	993799	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cactccaagttccacctgtgCagcgtccccacccgcgcgct	8	20	0	0	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001242837	exon13	c.C1599T	p.C533C	CCTGTGCAGCGTC		31	3	0.1	27	0	0				133	0	0				T	993799	C	T	993799	2	4	46	1	0	0	0	0	0	0	0	1	736	718	25	2		2	AP2A2	11	993799	Silent	SNP	C	TCGA-2G-AAH3-01A-11D-A42Y-10		993799	134012717	39	3181											
C11orf42	160298	broad.mit.edu	37	chr11	6231188	6231188	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aacagtcccgcccagcccatAcccgcctggctttgccaggt	9	18	0	0	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	C11orf42	NM_173525	exon2	c.A181C	p.T61P	GCCCATACCCGCC		71	16	0.23	93	25	0.2688172043		35		1	0	0				C	6231188	A	C	6231188	3	2	46	1	0	0	0	0	1	0	0	0	1646	391	14	4	187	4	C11orf42	11	6231188	Missense_Mutation	SNP	A	TCGA-2G-AAH3-01A-11D-A42Y-10	5237389	6231188	128775328	40	3182											
RAB3IL1	5866	mdanderson.org	37	chr11	61669973	61669973	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtccccgagccggattcGgtggcggcaggtgcgggtca	19	11	1	0	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	RAB3IL1,NS,carcinoma,+1,2	RAB3IL1	NM_013401	exon8	c.C940A	p.R314R	GGATTCGGTGGCG		57	3	0.05	65	0	0		1	2	24	0	0				T	61669973	G	T	61669973	2	4	46	1	0	0	0	0	0	0	0	1	12988	1124	39	1		1	RAB3IL1	11	61669973	Silent	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	55438785	61669973	73336543	41	3183											
BSCL2	26580	mdanderson.org	37	chr11	62458260	62458260	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtggtggctgcgccataccTgtccctgagggatcttcagg	14	11	2	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001130702	exon8	c.A818G	p.Q273R	CATACCTGTCCCT		53	4	0.08	74	0	0				244	0	0				C	62458260	T	C	62458260	3	2	46	1	0	0	0	0	1	0	0	0	1529	1594	55	4	248	4	BSCL2	11	62458260	Missense_Mutation	SNP	T	TCGA-2G-AAH3-01A-11D-A42Y-10	788287	62458260	72548256	42	3184											
CDC42EP2	10435	broad.mit.edu;mdanderson.org	37	chr11	65088569	65088569	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caagttccacctcctgccggGgaccatggtggaggggcctg	15	13	0	0	rs377014949	alternate_allele	TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	CDC42EP2	NM_006779	exon2	c.G200T	p.G67V	TGCCGGGGACCAT		149	6	0.04	147	0	0		13		2	0	0				T	65088569	G	T	65088569	3	4	46	1	0	0	0	0	1	0	0	0	3098	1232	43	3	202	3	CDC42EP2	11	65088569	Missense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	2630309	65088569	69917947	43	3185											
IGSF9B	22997	mdanderson.org	37	chr11	133805639	133805639	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcccatcgattaggatgcgCaccctcagcttcaggtcgct	10	14	2	0	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_014987	exon7	c.G840C	p.V280V	GATGCGCACCCTC		38	3	0.08	56	0	0				2	0	0				G	133805639	C	G	133805639	2	3	46	1	0	0	0	0	0	0	0	1	7649	697	25	5		5	IGSF9B	11	133805639	Silent	SNP	C	TCGA-2G-AAH3-01A-11D-A42Y-10	68717070	133805639	1200877	44	3186											
CACNA1C	775	broad.mit.edu	37	chr12	2800309	2800309	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggctgtgtgcgcgcgcggGgtcgaccgagtgaggaggag	22	9	0	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	CACNA1C	NM_199460	exon50	c.G6610T	p.G2204C	GCGCGGGGTCGAC		209	4	0.02	128	0	0		1023		54	0	0				T	2800309	G	T	2800309	3	4	46	1	0	0	0	0	1	0	0	0	2558	1232	43	3	7256	3	CACNA1C	12	2800309	Missense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10		2800309	131051586	45	3187											
SYCP3	50511	mdanderson.org	37	chr12	102127445	102127445	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagaatattcttggttaaGcttctgcctgtaaaacataa	7	7	2	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_153694	exon6	c.C361A	p.L121I	GGTTAAGCTTCTG		44	3	0.07	45	0	0				259	0	0				T	102127445	G	T	102127445	3	4	46	1	0	0	0	0	1	0	0	0	15490	971	34	2	365	2	SYCP3	12	102127445	Missense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	99327136	102127445	31724450	46	3188											
PXMP2	5827	mdanderson.org	37	chr12	133277883	133277883	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagatgagggggggcttctgGccggcgctgaggatgaactg	19	7	1	4	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_018663	exon4	c.G447A	p.W149X	CTTCTGGCCGGCG		45	3	0.07	35	0	0				86	2	0.02				A	133277883	G	A	133277883	4	1	46	1	0	0	0	0	0	1	0	0	12901	1212	42	2	461	2	PXMP2	12	133277883	Nonsense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	31150438	133277883	574012	47	3189											
ATP8A2	51761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr13	26436476	26436476	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggggaagcatgctgacctGgctggtgttttttggcatct	14	8	1	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_016529	exon33	c.G3113A	p.W1038X	TGACCTGGCTGGT		110	42	0.38	115	0	0				1	0	0				A	26436476	G	A	26436476	4	1	46	1	0	0	0	0	0	1	0	0	1191	1357	47	3	3243	3	ATP8A2	13	26436476	Nonsense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10		26436476	88733402	48	3190											
KBTBD6	89890	mdanderson.org	37	chr13	41705572	41705572	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcccccgagtatggatcaCagcagagaaagggatctctg	13	10	2	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_152903	exon1	c.G1076A	p.C359Y	GGATCACAGCAGA		208	15	0.07	181	2	0.0110497238				48	0	0				T	41705572	C	T	41705572	3	4	46	1	0	0	0	0	1	0	0	0	8040	478	17	3	952	3	KBTBD6	13	41705572	Missense_Mutation	SNP	C	TCGA-2G-AAH3-01A-11D-A42Y-10	15269096	41705572	73464306	49	3191											
DDHD1	0	broad.mit.edu	37	chr14	53513556	53513556	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acatgaaggttaaaagaaaaAgggcaacatccaaggatgac	10	6	0	3	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	DDHD1	NM_001160148	exon13	c.T2633C	p.L878P	AGAAAAAGGGCAA		443	4	0.01	390	2	0.0051282051		202		86	0	0				G	53513556	A	G	53513556	3	3	46	1	0	0	0	0	1	0	0	0	4349	72	3	4	73	4	DDHD1	14	53513556	Missense_Mutation	SNP	A	TCGA-2G-AAH3-01A-11D-A42Y-10		53513556	53835984	50	3192											
CDKN3	1033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	54884583	54884583	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtagctgcttgtctcctaCtatacctgtctgacacaata	6	11	2	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_005192	exon7	c.C466A	p.L156I	CTCCTACTATACC		186	11	0.06	150	0	0				94	13	0.14				A	54884583	C	A	54884583	3	1	46	1	0	0	0	0	1	0	0	0	3189	564	20	3	492	3	CDKN3	14	54884583	Missense_Mutation	SNP	C	TCGA-2G-AAH3-01A-11D-A42Y-10	1371027	54884583	52464957	51	3193											
YLPM1	56252	broad.mit.edu	37	chr14	75230979	75230979	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ataagacaactgtccagcaaGagcctttggagagtggggcc	13	9	0	3	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	YLPM1	NM_019589	exon1	c.G787T	p.E263X	CAGCAAGAGCCTT		125	5	0.04	93	0	0		298		84	1	0.01				T	75230979	G	T	75230979	4	4	46	1	0	0	0	0	0	1	0	0	17545	943	33	3	789	3	YLPM1	14	75230979	Nonsense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	20346396	75230979	32118561	52	3194											
BAHD1	22893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr15	40751683	40751684	+	Nonsense_Mutation	DNP	GG	GG	TT													gagtcacctgcccctaagcaGgaactgcatcagccctcttt					novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	GG	GG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_014952	exon2	c.G1021T	p.QE340H*	TAAGCAGGAACTG		154	33	0.21	96	0	0				117	0	0				TT	40751684	GG	TT	40751683	4	4	46	1	0	0	0	0	0	1	0	0	1295	991	35	3	1022	3	BAHD1	15	40751683	Nonsense_Mutation	DNP	GG	TCGA-2G-AAH3-01A-11D-A42Y-10		40751683	61779709	53	3195											
VPS13C	54832	broad.mit.edu	37	chr15	62254066	62254066	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcactcagagactctttGgctgtctggaaattattcag	10	9	4	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	VPS13C	NM_020821	exon35	c.C3630A	p.A1210A	CTCTTTGGCTGTC		102	4	0.04	86	0	0		506		6	0	0				T	62254066	G	T	62254066	2	4	46	1	0	0	0	0	0	0	0	1	17250	1335	47	3		3	VPS13C	15	62254066	Silent	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	21502383	62254066	40277326	54	3196											
MAN2C1	4123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	75656927	75656927	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gctcagctggaacatcttctCagggtcaggggctgcaatca	12	11	5	0	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001256494	exon5	c.G502A	p.E168K	TCTTCTCAGGGTC		96	16	0.17	86	0	0				64	10	0.16				T	75656927	C	T	75656927	3	4	46	1	0	0	0	0	1	0	0	0	9267	835	29	3	2708	3	MAN2C1	15	75656927	Missense_Mutation	SNP	C	TCGA-2G-AAH3-01A-11D-A42Y-10	13402861	75656927	26874465	55	3197											
SLCO3A1	28232	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr15	92671632	92671632	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgccctgcaataataactgTgaatgccaaaccgattcctt	6	12	0	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_013272	exon7	c.T1425C	p.C475C	TAACTGTGAATGC		148	6	0.04	111	0	0				16	2	0.13				C	92671632	T	C	92671632	2	2	46	1	0	0	0	0	0	0	0	1	14782	1702	59	4		4	SLCO3A1	15	92671632	Silent	SNP	T	TCGA-2G-AAH3-01A-11D-A42Y-10	17014705	92671632	9859760	56	3198											
HMOX2	3163	broad.mit.edu;mdanderson.org	37	chr16	4559436	4559436	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcaatgaactggaccaggcCggctccacactggccagaga	11	13	1	2	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	HMOX2	NM_001127205	exon5	c.C720T	p.A240A	CCAGGCCGGCTCC		73	4	0.05	78	0	0		22		205	0	0				T	4559436	C	T	4559436	2	4	46	1	0	0	0	0	0	0	0	1	7284	639	23	1		1	HMOX2	16	4559436	Silent	SNP	C	TCGA-2G-AAH3-01A-11D-A42Y-10		4559436	85795317	57	3199											
EEF2K	29904	broad.mit.edu	37	chr16	22291564	22291564	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cactggtacaacactgccctGgagatgacggactgtgatga	12	10	0	4	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	EEF2K	NM_013302	exon17	c.G1935T	p.L645L	TGCCCTGGAGATG		87	3	0.03	109	0	0		142		22	0	0				T	22291564	G	T	22291564	2	4	46	1	0	0	0	0	0	0	0	1	4956	1335	47	3		3	EEF2K	16	22291564	Silent	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	17732128	22291564	68063189	58	3200											
EARS2	124454	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	23540942	23540942	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaccaagtcctgcaggcgGcaaatgtgaccctggggaag	14	11	0	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	EARS2	NM_001083614	exon7	c.C1233T	p.C411C	CAGGCGGCAAATG		89	24	0.27	126	1	0.0079365079		26		68	24	0.35				A	23540942	G	A	23540942	2	1	46	1	0	0	0	0	0	0	0	1	4904	1195	42	2		2	EARS2	16	23540942	Silent	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	1249378	23540942	66813811	59	3201											
ZNF629	23361	mdanderson.org	37	chr16	30794137	30794137	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtccatgtgcgtgcggacGtgggtaataaggttggagct	16	7	0	0	rs189318984	by1000genomes;alternate_allele	TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001080417	exon3	c.C1512A	p.H504Q	GCGGACGTGGGTA		36	3	0.08	61	1	0.0163934426				0	0					T	30794137	G	T	30794137	3	4	46	1	0	0	0	0	1	0	0	0	18109	1136	40	1	1101	1	ZNF629	16	30794137	Missense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	7253195	30794137	59560616	60	3202											
PYY	5697	mdanderson.org	37	chr17	42030492	42030492	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttaccgcgacctgacggggCggtcctcgccgtcggggaag	16	13	0	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_004160	exon6	c.G254A	p.R85H	ACGGGGCGGTCCT		121	6	0.05	138	0	0				356	0	0				T	42030492	C	T	42030492	3	4	46	1	0	0	0	0	1	0	0	0	12919	768	27	1	47	1	PYY	17	42030492	Missense_Mutation	SNP	C	TCGA-2G-AAH3-01A-11D-A42Y-10		42030492	39164718	61	3203											
SALL3	27164	bcgsc.ca	37	chr18	76754583	76754583	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctgaccggcctcaagtcCgtggagaacgggtccgggga	16	12	1	2	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	SALL3,NS,carcinoma,0,1	SALL3	NM_171999	exon2	c.C2592T	p.S864S	CAAGTCCGTGGAG		46	4	0.09	67	0	0		162	1	0	0					T	76754583	C	T	76754583	2	4	46	1	0	0	0	0	0	0	0	1	13863	639	23	1		1	SALL3	18	76754583	Silent	SNP	C	TCGA-2G-AAH3-01A-11D-A42Y-10		76754583	1322665	62	3204											
ARHGEF1	0	broad.mit.edu	37	chr19	42410875	42410875	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagttggaggaggaattttgCcgcctgagacccctcctgtc	13	11	0	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	ARHGEF1	NM_199002	exon28	c.C2721T	p.C907C	ATTTTGCCGCCTG		255	6	0.02	155	1	0.0064516129		95		130	0	0				T	42410875	C	T	42410875	3	4	46	1	0	0	0	0	1	0	0	0	890	747	26	2	2831	2	ARHGEF1	19	42410875	Missense_Mutation	SNP	C	TCGA-2G-AAH3-01A-11D-A42Y-10		42410875	16718108	63	3205											
ZNF836	162962	mdanderson.org	37	chr19	52671321	52671321	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcattttacctgtgtaagaGccatccctgactccttttct	5	12	2	2	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001102657	exon3	c.C5A	p.A2D	GTAAGAGCCATCC		55	3	0.05	46	0	0				14	0	0				T	52671321	G	T	52671321	3	4	46	1	0	0	0	0	1	0	0	0	18233	971	34	2	2815	2	ZNF836	19	52671321	Missense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	10260446	52671321	6457662	64	3206											
VPS16	64601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr20	2843984	2843984	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gccatccagatatgcgagtaCttgcgccttcctgaagtaca	9	12	0	2	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_022575	exon15	c.C1416G	p.Y472X	CGAGTACTTGCGC		98	23	0.23	67	0	0				120	9	0.08				G	2843984	C	G	2843984	4	3	46	1	0	0	0	0	0	1	0	0	17252	576	20	5	1474	5	VPS16	20	2843984	Nonsense_Mutation	SNP	C	TCGA-2G-AAH3-01A-11D-A42Y-10		2843984	60181536	65	3207											
PANX2	56666	broad.mit.edu	37	chr22	50617594	50617594	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgggaggaggaggacggggGcccccgcctgccgcaggacg	20	14	0	0	rs376326556	alternate_allele	TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	PANX2	NM_052839	exon3	c.G1922C	p.G641A	ACGGGGGCCCCCG		87	20	0.23	115	6	0.052173913		69		7	2	0.29				C	50617594	G	C	50617594	3	2	46	1	0	0	0	0	1	0	0	0	11467	1203	42	5	1932	5	PANX2	22	50617594	Missense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10		50617594	686972	66	3208											
PPEF1	5475	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	18845542	18845542	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gactttaatgagtttttaaaGgctttctatgtagtgcatag	9	4	1	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	PPEF1	NM_006240	exon19	c.G1899T	p.K633N	TTTAAAGGCTTTC		251	8	0.03	149	1	0.0067114094		89		5	0	0				T	18845542	G	T	18845542	3	4	46	1	0	0	0	0	1	0	0	0	12351	991	35	3	1961	3	PPEF1	23	18845542	Missense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10		18845542	136425018	67	3209											
DDX3X	1654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	41205590	41205590	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	taccagcatccatggagaccGttctcagagggatagagaag	12	9	1	3	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_001193416	exon13	c.G1424C	p.R475P	GAGACCGTTCTCA		183	14	0.08	144	0	0				754	57	0.08				C	41205590	G	C	41205590	3	2	46	1	0	0	0	0	1	0	0	0	4381	1145	40	5	1474	5	DDX3X	23	41205590	Missense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	22360048	41205590	114064970	68	3210											
TSPYL2	64061	mdanderson.org	37	chrX	53111842	53111842	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccaggaggaaacggaggcGgcacaggtgctggccgatat	16	10	0	0	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	.	NM_022117	exon1	c.G162T	p.A54A	GGAGGCGGCACAG		28	3	0.11	17	0	0				7	0	0				T	53111842	G	T	53111842	2	4	46	1	0	0	0	0	0	0	0	1	16720	1103	39	1		1	TSPYL2	23	53111842	Silent	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	11906252	53111842	102158718	69	3211											
NLGN3	54413	broad.mit.edu	37	chrX	70387352	70387352	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaccgtgacaaccctgagAcccgccgtaaaacactggtg	10	14	0	3	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	NLGN3	NM_181303	exon7	c.A1405C	p.T469P	CCTGAGACCCGCC		94	29	0.31	52	14	0.2692307692		159		1	0	0				C	70387352	A	C	70387352	3	2	46	1	0	0	0	0	1	0	0	0	10509	275	10	4	1427	4	NLGN3	23	70387352	Missense_Mutation	SNP	A	TCGA-2G-AAH3-01A-11D-A42Y-10	17275510	70387352	84883208	70	3212											
MORC4	79710	broad.mit.edu	37	chrX	106184800	106184800	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcacgaagctccaagtgaGggaggacagaagtaaggaga	14	7	1	3	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	MORC4	NM_024657	exon17	c.C2723A	p.P908H	AAGTGAGGGAGGA		259	6	0.02	198	0	0		155		102	0	0				T	106184800	G	T	106184800	3	4	46	1	0	0	0	0	1	0	0	0	9752	1000	35	3	94	3	MORC4	23	106184800	Missense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	35797448	106184800	49085760	71	3213											
UBE2NL	389898	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	142967560	142967560	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	taaatgctcccaatccagatGatccattagcaaatgatgta	6	9	0	3	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	UBE2NL	NM_001012989	exon1	c.G358T	p.D120Y	CCAGATGATCCAT		177	79	0.45	153	1	0.0065359477		46		0	0					T	142967560	G	T	142967560	3	4	46	1	0	0	0	0	1	0	0	0	16927	1290	45	3	360	3	UBE2NL	23	142967560	Missense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	36782760	142967560	12303000	72	3214											
F8	2157	broad.mit.edu	37	chrX	154157224	154157224	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagggacaaaatggtatccTttttcttaaaagctgttttt	7	6	2	0	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	F8	NM_000132	exon14	c.A4841G	p.K1614R	GTATCCTTTTTCT		164	4	0.02	106	0	0		646		0	0					C	154157224	T	C	154157224	3	2	46	1	0	0	0	0	1	0	0	0	5378	1609	56	4	2294	4	F8	23	154157224	Missense_Mutation	SNP	T	TCGA-2G-AAH3-01A-11D-A42Y-10	11189664	154157224	1113336	73	3215											
IL9R	3581	broad.mit.edu	37	chrX	155234957	155234957	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacagcaggcccagcacagGgatcacattgtcggggtgac	13	13	1	1	novel		TCGA-2G-AAH3-01A-11D-A42Y-10	TCGA-2G-AAH3-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	914e1323-9f05-4117-9895-86f2ecd7a395	280dee5e-025a-4514-a742-494dcf4aca01	.	IL9R	NM_176786	exon7	c.G699T	p.R233S	GCACAGGGATCAC		186	5	0.03	246	0	0		73		0	0					T	155234957	G	T	155234957	3	4	46	1	0	0	0	0	1	0	0	0	7751	1223	43	3	616	3	IL9R	23	155234957	Missense_Mutation	SNP	G	TCGA-2G-AAH3-01A-11D-A42Y-10	1077733	155234957	35603	74	3216											
AHDC1	27245	mdanderson.org	37	chr1	27875938	27875938	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgctacccactgccactgGgctggccttggctccccggc	12	18	0	0	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_001029882	exon6	c.C2689A	p.P897T	CCACTGGGCTGGC		41	3	0.07	57	0	0				48	0	0				T	27875938	G	T	27875938	3	4	47	1	0	0	0	0	1	0	0	0	409	1232	43	3	2126	3	AHDC1	1	27875938	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10		27875938	221374683	1	3217											
EPHA10	284656	mdanderson.org	37	chr1	38227156	38227156	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accagccactcgccgtcggcGccgcagtgcatgcgtggggg	16	15	0	0	rs140939937	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_173641	exon3	c.C771A	p.G257G	GTCGGCGCCGCAG		18	2	0.11	15	0	0				0	0					T	38227156	G	T	38227156	2	4	47	1	0	0	0	0	0	0	0	1	5194	1074	38	1		1	EPHA10	1	38227156	Silent	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	10351218	38227156	211023465	2	3218											
SEC22B	9554	broad.mit.edu	37	chr1	145109259	145109260	+	RNA	INS	-	-	A													atgccactgcactccagcccINSgggggcagagcgagactccg					rs11386827	bycluster;by1000genomes	TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	.	.	.	.	CCAGCCCGGGGGC		7	2	0.29	7	0	0				0	0					A	145109260	-	A	145109259	6	5	47	0	1	1	1	0	0	0	0	0	14042	667	23	0		0	SEC22B	1	145109259	RNA	INS	-	TCGA-2G-AAH4-01A-12D-A42Y-10	106882103	145109259	104141362	3	3219											
EPAS1	2034	broad.mit.edu	37	chr2	46605215	46605215	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgccaccagcagcagcagcAgctgctccacggtgagcagc	13	15	0	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	EPAS1	NM_001430	exon10	c.A1432T	p.S478C	AGCAGCAGCTGCT		89	4	0.04	54	0	0		83		29	0	0				T	46605215	A	T	46605215	3	4	47	1	0	0	0	0	1	0	0	0	5178	188	7	5	1470	5	EPAS1	2	46605215	Missense_Mutation	SNP	A	TCGA-2G-AAH4-01A-12D-A42Y-10		46605215	196594158	4	3220											
MFF	56947	broad.mit.edu	37	chr2	228211978	228211978	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caacaggctcgggtctgtccTccccatatgttacctgaaga	9	13	1	2	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	MFF	NM_020194	exon8	c.T630C	p.P210P	CTGTCCTCCCCAT		172	3	0.02	171	0	0		48		63	0	0				C	228211978	T	C	228211978	2	2	47	1	0	0	0	0	0	0	0	1	9568	1538	54	4		4	MFF	2	228211978	Silent	SNP	T	TCGA-2G-AAH4-01A-12D-A42Y-10	181606763	228211978	14987395	5	3221											
SLC22A13	9390	bcgsc.ca;mdanderson.org	37	chr3	38317788	38317788	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctgccagatctgcccgtGgtggtcaccatgctggctgt	12	14	3	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	SLC22A13,right_upper_lobe,carcinoma,+1,2	SLC22A13	NM_004256	exon8	c.G1248T	p.V416V	GCCCGTGGTGGTC		86	5	0.06	86	0	0		42	2	0	0					T	38317788	G	T	38317788	2	4	47	1	0	0	0	0	0	0	0	1	14498	1335	47	3		3	SLC22A13	3	38317788	Silent	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10		38317788	159704642	6	3222											
EPHA6	285220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	96706454	96706454	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagtatacaaagatcgacaCaattgctgctgatgagagtt	9	8	0	3	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_001080448	exon3	c.C731T	p.T244I	TCGACACAATTGC		172	41	0.24	186	0	0				2	1	0.5				T	96706454	C	T	96706454	3	4	47	1	0	0	0	0	1	0	0	0	5199	478	17	3	741	3	EPHA6	3	96706454	Missense_Mutation	SNP	C	TCGA-2G-AAH4-01A-12D-A42Y-10	58388666	96706454	101315976	7	3223											
HCLS1	3059	broad.mit.edu	37	chr3	121354648	121354648	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catttcattgaagccgacagCgctctgcaggcaggagaaca	11	11	2	2	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	HCLS1	NM_005335	exon9	c.G625A	p.A209T	CGACAGCGCTCTG		98	3	0.03	64	0	0		78		124	0	0				T	121354648	C	T	121354648	3	4	47	1	0	0	0	0	1	0	0	0	7035	768	27	1	859	1	HCLS1	3	121354648	Missense_Mutation	SNP	C	TCGA-2G-AAH4-01A-12D-A42Y-10	24648194	121354648	76667782	8	3224											
MUC4	4585	bcgsc.ca	37	chr3	195505805	195505805	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcgtgacctgtggatgctgAggaagtgtcggtgacaggaa	18	6	0	3	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	MUC4	NM_018406	exon2	c.T12646G	p.S4216A	ATGCTGAGGAAGT		153	9	0.06	134	2	0.0149253731		1505		0	0					C	195505805	A	C	195505805	3	2	47	1	0	0	0	0	1	0	0	0	10025	304	11	4		4	MUC4	3	195505805	Missense_Mutation	SNP	A	TCGA-2G-AAH4-01A-12D-A42Y-10	74151157	195505805	2516625	9	3225											
MUC4	4585	bcgsc.ca	37	chr3	195508165	195508165	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggtggatgctgaggaagtgCtggtgacaggaagaggggtg	21	4	0	3	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	MUC4	NM_018406	exon2	c.G10286A	p.S3429N	GAAGTGCTGGTGA		264	15	0.06	191	4	0.0209424084		1505		0	0					T	195508165	C	T	195508165	3	4	47	1	0	0	0	0	1	0	0	0	10025	797	28	2		2	MUC4	3	195508165	Missense_Mutation	SNP	C	TCGA-2G-AAH4-01A-12D-A42Y-10	2360	195508165	2514265	10	3226											
UCHL1	7345	mdanderson.org	37	chr4	41259027	41259027	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatggagatcaaccccgagGtgagcgccaggtgcaccgct	14	13	1	2	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_004181	exon1	c.33+1G>T	.	CCCGAGGTGAGCG		96	4	0.04	127	2	0.0157480315				2	0	0				T	41259027	G	T	41259027	5	4	47	1	0	0	0	0	0	0	1	0	16979	1275	44	3	36	3	UCHL1	4	41259027	Splice_Site	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10		41259027	149895249	11	3227											
LARP1B	55132	mdanderson.org	37	chr4	129019452	129019452	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggttttcagcgtgttcaGgctctcactacaaaccttaa	8	11	3	0	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	LARP1B_ENST00000427266,NS,carcinoma,+2,2	LARP1B_ENST00000427266	NM_178043	exon8	c.G780T	p.Q260H	TGTTCAGGCTCTC		92	4	0.04	76	0	0		2	2	29	0	0				T	129019452	G	T	129019452	3	4	47	1	0	0	0	0	1	0	0	0	8667	991	35	3	802	3	LARP1B	4	129019452	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	87760425	129019452	62134824	12	3228											
ZFP42	132625	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	188924033	188924033	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtggaagagcccccagtggGgctaagcccaggcaaggcaa	16	11	0	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_174900	exon4	c.G72A	p.G24G	CAGTGGGGCTAAG		169	77	0.46	211	0	0				8	2	0.25				A	188924033	G	A	188924033	2	1	47	1	0	0	0	0	0	0	0	1	17707	1219	43	3		3	ZFP42	4	188924033	Silent	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	59904581	188924033	2230243	13	3229											
FER	2241	broad.mit.edu	37	chr5	108168539	108168539	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aagacacatgcagaggacttGaactctggacctttacacag	9	10	1	3	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	FER	NM_005246	exon4	c.G276T	p.L92F	GGACTTGAACTCT		241	7	0.03	290	1	0.0034482759		100		3	0	0				T	108168539	G	T	108168539	3	4	47	1	0	0	0	0	1	0	0	0	5845	1281	45	3	282	3	FER	5	108168539	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10		108168539	72746721	14	3230											
PCDHB8	56128	hgsc.bcm.edu	37	chr5	140559196	140559196	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gactacgaggccctgcaggcGttcgagttccgggtgggcgc	17	12	0	0	rs146788088	alternate_allele	TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	PCDHB8,NS,carcinoma,+1,1	PCDHB8	NM_019120	exon1	c.G1581T	p.A527A	GCAGGCGTTCGAG		78	4	0.05	85	2	0.0235294118		1	1	0	0					T	140559196	G	T	140559196	2	4	47	1	0	0	0	0	0	0	0	1	11594	1132	40	1		1	PCDHB8	5	140559196	Silent	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	32390657	140559196	40356064	15	3231											
TNIP1	10318	mdanderson.org	37	chr5	150439917	150439917	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgctctctggtgaattctGctcctcaggagtgaccactt	10	12	3	2	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_001252385	exon5	c.C397A	p.Q133K	AATTCTGCTCCTC		47	3	0.06	42	0	0				169	0	0				T	150439917	G	T	150439917	3	4	47	1	0	0	0	0	1	0	0	0	16373	1328	46	2	1569	2	TNIP1	5	150439917	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	9880721	150439917	30475343	16	3232											
MTCH1	23787	mdanderson.org	37	chr6	36953795	36953795	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gagccgcaggccgagggtggCgaggatgtgcgcggtgcgcg	22	10	0	0	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_014341	exon1	c.G155T	p.R52L	GGGTGGCGAGGAT		34	3	0.09	21	0	0				211	0	0				A	36953795	C	A	36953795	3	1	47	1	0	0	0	0	1	0	0	0	9960	768	27	1	1011	1	MTCH1	6	36953795	Missense_Mutation	SNP	C	TCGA-2G-AAH4-01A-12D-A42Y-10		36953795	134161272	17	3233											
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	56422278	56422278	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttccagtttttgttgtcTatcaattgttaattgattga	6	5	3	2	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_015548	exon40	c.A6610G	p.R2204G	GTTGTCTATCAAT		142	43	0.3	154	0	0				1	0	0				C	56422278	T	C	56422278	3	2	47	1	0	0	0	0	1	0	0	0	4809	1530	53	4	9085	4	DST	6	56422278	Missense_Mutation	SNP	T	TCGA-2G-AAH4-01A-12D-A42Y-10	19468483	56422278	114692789	18	3234											
MAP3K7	6885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	91254350	91254350	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccgtttaggcttggaataGgctgcaaaaacacatatata	8	9	0	0	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	MAP3K7_ENST00000369329,NS,carcinoma,-1,1	MAP3K7_ENST00000369329	NM_145331	exon12	c.C1212A	p.A404A	GGAATAGGCTGCA		188	60	0.32	154	0	0		-1	1	19	6	0.32				T	91254350	G	T	91254350	2	4	47	1	0	0	0	0	0	0	0	1	9304	1014	35	3		3	MAP3K7	6	91254350	Silent	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	34832072	91254350	79860717	19	3235											
UST	10090	broad.mit.edu	37	chr6	149262435	149262435	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtactacctttcccaagccaGgtggtgtacaacagggtagg	12	10	0	0	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	UST	NM_005715	exon3	c.G312T	p.Q104H	AAGCCAGGTGGTG		209	4	0.02	195	0	0		42		4	0	0				T	149262435	G	T	149262435	3	4	47	1	0	0	0	0	1	0	0	0	17152	991	35	3	322	3	UST	6	149262435	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	58008085	149262435	21852632	20	3236											
SDK1	221935	mdanderson.org	37	chr7	4198179	4198179	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcggtgaccacgctgcaGgatggtgagcaacccggggc	18	11	0	2	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_152744	exon31	c.G4725T	p.Q1575H	GCTGCAGGATGGT		52	3	0.06	38	0	0				26	0	0				T	4198179	G	T	4198179	3	4	47	1	0	0	0	0	1	0	0	0	14021	991	35	3	4847	3	SDK1	7	4198179	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10		4198179	154940484	21	3237											
DAGLB	221955	broad.mit.edu	37	chr7	6485734	6485734	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	caacgtcagaatgccaatccAcctggcaaaaaaaaaaaagg	7	10	1	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	DAGLB	NM_139179	exon2	c.T97G	p.W33G	CAATCCACCTGGC		112	35	0.31	71	21	0.2957746479		74		20	0	0				C	6485734	A	C	6485734	5	2	47	1	0	0	0	0	0	0	1	0	4251	173	6	4	1977	4	DAGLB	7	6485734	Splice_Site	SNP	A	TCGA-2G-AAH4-01A-12D-A42Y-10	2287555	6485734	152652929	22	3238											
MYO1G	64005	broad.mit.edu	37	chr7	45016249	45016249	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttctgtcttccctgccccActctcccctgccggaaagac	7	19	3	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	MYO1G	NM_033054	exon3	c.T312G	p.S104R	TGCCCCACTCTCC		175	8	0.05	154	6	0.038961039		86		1	0	0				C	45016249	A	C	45016249	3	2	47	1	0	0	0	0	1	0	0	0	10121	156	6	4	2824	4	MYO1G	7	45016249	Missense_Mutation	SNP	A	TCGA-2G-AAH4-01A-12D-A42Y-10	38530515	45016249	114122414	23	3239											
GIGYF1	64599	mdanderson.org	37	chr7	100280727	100280727	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccagctgcaactccaggaGcgtcttcatggacagcccct	9	16	2	0	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_022574	exon19	c.C2320A	p.L774I	CCAGGAGCGTCTT		35	3	0.09	22	0	0				100	0	0				T	100280727	G	T	100280727	3	4	47	1	0	0	0	0	1	0	0	0	6418	971	34	2	811	2	GIGYF1	7	100280727	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	55264478	100280727	58857936	24	3240											
LHFPL3	375612	mdanderson.org	37	chr7	103969251	103969251	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccggagccgccgccgctgcCgccgccgccgccgccgcgat	14	23	0	0	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	LHFPL3,NS,carcinoma,0,1	LHFPL3	NM_199000	exon1	c.C24T	p.A8A	CGCTGCCGCCGCC		51	3	0.06	39	0	0		0	1	0	0					T	103969251	C	T	103969251	2	4	47	1	0	0	0	0	0	0	0	1	8805	639	23	1		1	LHFPL3	7	103969251	Silent	SNP	C	TCGA-2G-AAH4-01A-12D-A42Y-10	3688524	103969251	55169412	25	3241											
LRGUK	136332	broad.mit.edu	37	chr7	133943050	133943050	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catgaaatgttcattgtttcGgttctgtccgtggtcaaaag	10	7	3	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	LRGUK,NS,carcinoma,+1,1	LRGUK	NM_144648	exon19	c.G2240T	p.R747L	TGTTTCGGTTCTG		295	6	0.02	206	0	0		113	1	0	0					T	133943050	G	T	133943050	3	4	47	1	0	0	0	0	1	0	0	0	8987	1116	39	1	2314	1	LRGUK	7	133943050	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	29973799	133943050	25195613	26	3242											
ZNF775	285971	broad.mit.edu;mdanderson.org	37	chr7	150094605	150094605	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccgcactgtggccgcggcTtccgccagaagcagcacctg	13	17	0	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	ZNF775	NM_173680	exon3	c.T1036C	p.F346L	CGCGGCTTCCGCC		14	5	0.36	10	0	0		34		21	4	0.19				C	150094605	T	C	150094605	3	2	47	1	0	0	0	0	1	0	0	0	18196	1609	56	4	1042	4	ZNF775	7	150094605	Missense_Mutation	SNP	T	TCGA-2G-AAH4-01A-12D-A42Y-10	16151555	150094605	9044058	27	3243											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr7	152012230	152012230	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaaactgcttactttctctGtcctctttgttttcgtggtg	8	10	2	0	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	MLL3_ENST00000355193,NS,carcinoma,0,2	MLL3_ENST00000355193	NM_170606	exon4	c.C583T	p.Q195X	TTCTCTGTCCTCT		274	71	0.26	215	0	0		0	2	0	0					A	152012230	G	A	152012230	4	1	47	1	0	0	0	0	0	1	0	0	9669	1386	48	3	14376	3	MLL3	7	152012230	Nonsense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	1917625	152012230	7126433	28	3244											
PALM2	445815	bcgsc.ca	37	chr9	112629770	112629770	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtctctttattttcaaGgaaaaaagaaagaggcagac	8	7	3	3	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	PALM2	NM_001037293	exon3	c.52-1G>T	.	TTTCAAGGAAAAA		62	4	0.06	48	0	0		51		0	0					T	112629770	G	T	112629770	5	4	47	1	0	0	0	0	0	0	1	0	11455	1014	35	3	61	3	PALM2	9	112629770	Splice_Site	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10		112629770	28583661	29	3245											
MAN1B1	11253	broad.mit.edu;mdanderson.org	37	chr9	140002112	140002112	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agagcttcagccgattcacaCgggtgagcacctgtcctcgc	11	14	2	2	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	MAN1B1	NM_016219	exon12	c.C1894T	p.R632W	TTCACACGGGTGA		39	3	0.08	24	0	0		40		209	0	0				T	140002112	C	T	140002112	3	4	47	1	0	0	0	0	1	0	0	0	9261	527	19	1	1940	1	MAN1B1	9	140002112	Missense_Mutation	SNP	C	TCGA-2G-AAH4-01A-12D-A42Y-10	27372342	140002112	1211319	30	3246											
PTCHD3	374308	broad.mit.edu	37	chr10	27702322	27702322	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgccgtggttgtaggcGgggaaggagatgctgctcag	18	8	1	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	PTCHD3	NM_001034842	exon1	c.C858A	p.P286P	GTAGGCGGGGAAG		78	3	0.04	80	0	0		140		0	0					T	27702322	G	T	27702322	2	4	47	1	0	0	0	0	0	0	0	1	12782	1103	39	1		1	PTCHD3	10	27702322	Silent	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10		27702322	107832425	31	3247											
BMS1	9790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	43312871	43312871	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaaattgaaggagatgtttGatgcagaatatgatgaagga	13	1	0	6	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_014753	exon15	c.G2509C	p.D837H	ATGTTTGATGCAG		53	19	0.36	58	0	0				78	32	0.41				C	43312871	G	C	43312871	3	2	47	1	0	0	0	0	1	0	0	0	1471	1290	45	5	2563	5	BMS1	10	43312871	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	15610549	43312871	92221876	32	3248											
PDLIM1	9124	bcgsc.ca	37	chr10	97006973	97006973	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcagatggagctgattaccTttttcttcagactccaggat	9	9	2	3	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	PDLIM1	NM_020992	exon5	c.A684G	p.K228K	ATTACCTTTTTCT		64	4	0.06	56	0	0		33		279	0	0				C	97006973	T	C	97006973	2	2	47	1	0	0	0	0	0	0	0	1	11725	1623	56	4		4	PDLIM1	10	97006973	Silent	SNP	T	TCGA-2G-AAH4-01A-12D-A42Y-10	53694102	97006973	38527774	33	3249											
WNT8B	7479	mdanderson.org	37	chr10	102242248	102242248	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcgctccatctctacccGggagctggtgcacctggagg	12	14	1	0	rs143970308	alternate_allele	TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_003393	exon6	c.G731T	p.R244L	CTACCCGGGAGCT		8	1	0.13	13	0	0				0	0					T	102242248	G	T	102242248	3	4	47	1	0	0	0	0	1	0	0	0	17456	1116	39	1	753	1	WNT8B	10	102242248	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	5235275	102242248	33292499	34	3250											
FBXW4	6468	bcgsc.ca	37	chr10	103371159	103371159	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggggagtcgacgtcagCgggaaggcctggaagggagg	21	7	1	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	FBXW4	NM_022039	exon9	c.G1128A	p.P376P	CGTCAGCGGGAAG		55	4	0.07	68	0	0		39		186	0	0				T	103371159	C	T	103371159	2	4	47	1	0	0	0	0	0	0	0	1	5799	755	27	1		1	FBXW4	10	103371159	Silent	SNP	C	TCGA-2G-AAH4-01A-12D-A42Y-10	1128911	103371159	32163588	35	3251											
MUC2	4583	mdanderson.org	37	chr11	1093342	1093342	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggcacacagaccccaaccCcgacacccatctccaccacc	4	24	1	1	rs55695633	alternate_allele	TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	MUC2_ENST00000441003,NS,carcinoma,-2,2	MUC2_ENST00000441003	NM_002457	exon30	c.C5161A	p.P1721T	CCAACCCCGACAC		36	3	0.08	38	0	0		-2	2	0	0					A	1093342	C	A	1093342	3	1	47	1	0	0	0	0	1	0	0	0	10022	623	22	3	5279	3	MUC2	11	1093342	Missense_Mutation	SNP	C	TCGA-2G-AAH4-01A-12D-A42Y-10		1093342	133913174	36	3252											
PGAP2	27315	mdanderson.org	37	chr11	3845201	3845201	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tttctgcatcggcctgcactCggcgcctcgcttcttggtgg	12	14	2	0	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_001256236	exon5	c.C608T	p.S203L	TGCACTCGGCGCC		48	3	0.06	67	1	0.0149253731				47	0	0				T	3845201	C	T	3845201	3	4	47	1	0	0	0	0	1	0	0	0	11825	893	31	1	626	1	PGAP2	11	3845201	Missense_Mutation	SNP	C	TCGA-2G-AAH4-01A-12D-A42Y-10	2751859	3845201	131161315	37	3253											
ARHGAP1	392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	46717282	46717282	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	cttcaggtgtgtgacaagttCcggggagctgcttttggagt	15	7	1	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_004308	exon3	c.G157C	p.E53Q	CAAGTTCCGGGGA		111	36	0.32	114	0	0				67	18	0.27				G	46717282	C	G	46717282	3	3	47	1	0	0	0	0	1	0	0	0	858	864	30	5	1206	5	ARHGAP1	11	46717282	Missense_Mutation	SNP	C	TCGA-2G-AAH4-01A-12D-A42Y-10	42872081	46717282	88289234	38	3254											
PICALM	8301	mdanderson.org	37	chr11	85701308	85701308	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tttaccaacaaacatttcatGagtaggtgtcctagtagtaa	7	7	1	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_007166	exon13	c.C1393A	p.H465N	TTTCATGAGTAGG		36	3	0.08	61	0	0				13	0	0				T	85701308	G	T	85701308	3	4	47	1	0	0	0	0	1	0	0	0	11927	1290	45	3	625	3	PICALM	11	85701308	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	38984026	85701308	49305208	39	3255											
FAT3	120114	hgsc.bcm.edu;mdanderson.org	37	chr11	92535075	92535075	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgagctaccatattacaGgtgagtaaatacccccagtt	8	9	0	2	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_001008781	exon9	c.G8896T	p.G2966X	ATTACAGGTGAGT		92	4	0.04	115	0	0				0	0					T	92535075	G	T	92535075	4	4	47	1	0	0	0	0	0	1	0	0	5723	1014	35	3	8930	3	FAT3	11	92535075	Nonsense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	6833767	92535075	42471441	40	3256											
ELMOD1	55531	broad.mit.edu	37	chr11	107521086	107521086	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgcggaaagggatgccacaGcagctcagcaggtcctgtct	13	12	2	0	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	ELMOD1	NM_018712	exon8	c.G580T	p.A194S	GCCACAGCAGCTC		66	3	0.05	93	0	0		40		2	0	0				T	107521086	G	T	107521086	3	4	47	1	0	0	0	0	1	0	0	0	5096	971	34	2	606	2	ELMOD1	11	107521086	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	14986011	107521086	27485430	41	3257											
FAM118B	79607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	126126463	126126463	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgtatcttttccttccagaGagaaattcagaaactctacg	6	9	3	3	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_024556	exon7	c.G698C	p.R233T	TCCAGAGAGAAAT		47	17	0.36	53	0	0				41	21	0.51				C	126126463	G	C	126126463	3	2	47	1	0	0	0	0	1	0	0	0	5443	956	33	5	716	5	FAM118B	11	126126463	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	18605377	126126463	8880053	42	3258											
GPR162	27239	broad.mit.edu	37	chr12	6933730	6933730	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccggagagtggggggtggTggggggaccaaagcgggtgg	25	6	0	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	GPR162	NM_019858	exon2	c.T666G	p.G222G	GGGTGGTGGGGGG		189	26	0.14	55	7	0.1272727273		55		0	0					G	6933730	T	G	6933730	2	3	47	1	0	0	0	0	0	0	0	1	6705	1683	59	4		4	GPR162	12	6933730	Silent	SNP	T	TCGA-2G-AAH4-01A-12D-A42Y-10		6933730	126918165	43	3259											
GYS2	2998	broad.mit.edu	37	chr12	21690032	21690032	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcatcttccacatcactGctctgaggactggaggcctg	9	13	4	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	GYS2,NS,carcinoma,0,1	GYS2	NM_021957	exon16	c.C1968A	p.S656R	ATCACTGCTCTGA		978	7	0.01	392	1	0.0025510204		110	1	0	0					T	21690032	G	T	21690032	3	4	47	1	0	0	0	0	1	0	0	0	6953	1310	46	2	147	2	GYS2	12	21690032	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	14756302	21690032	112161863	44	3260											
FGD4	121512	broad.mit.edu	37	chr12	32764204	32764204	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacacttcagcacaagaacGctaccttttcttagtgagta	7	10	2	2	rs281865063	alternate_allele	TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	FGD4,NS,carcinoma,0,1	FGD4	NM_139241	exon10	c.G1325T	p.R442L	AAGAACGCTACCT		272	4	0.01	107	0	0		86	1	5	0	0				T	32764204	G	T	32764204	3	4	47	1	0	0	0	0	1	0	0	0	5867	1087	38	1	1355	1	FGD4	12	32764204	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	11074172	32764204	101087691	45	3261											
CPSF6	11052	broad.mit.edu	37	chr12	69646900	69646900	+	Frame_Shift_Del	DEL	T	T	-													atgatattttggagataaaaTtttttgaaaatcgggcaaat					novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	CPSF6	NM_007007	exon3	c.340delT	p.F114fs	ATAAAATTTTTTG		2833	7	0	513	0	0		96		70	0	0				-	69646900	T	-	69646900	7	5	47	1	0	1	0	1	0	0	0	0	3852	1493	52	0	350	0	CPSF6	12	69646900	Frame_Shift_Del	DEL	T	TCGA-2G-AAH4-01A-12D-A42Y-10	36882696	69646900	64204995	46	3262											
STOML3	161003	mdanderson.org	37	chr13	39542579	39542579	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcagcctcggctgccatGgatctctgcaactgcacggg	12	15	2	0	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_145286	exon6	c.C609A	p.S203S	TGCCATGGATCTC		39	3	0.08	61	0	0				1	0	0				T	39542579	G	T	39542579	2	4	47	1	0	0	0	0	0	0	0	1	15370	1335	47	3		3	STOML3	13	39542579	Silent	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10		39542579	75627299	47	3263											
HERC2	8924	broad.mit.edu	37	chr15	28483779	28483779	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tttcctgttaacgactgtgtCtggaagtcctttatatcata	7	8	2	0	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	HERC2	NM_004667	exon24	c.G3717T	p.Q1239H	CTGTGTCTGGAAG		530	7	0.01	465	0	0		501		3	0	0				A	28483779	C	A	28483779	3	1	47	1	0	0	0	0	1	0	0	0	7098	912	32	3	11067	3	HERC2	15	28483779	Missense_Mutation	SNP	C	TCGA-2G-AAH4-01A-12D-A42Y-10		28483779	74047613	48	3264											
NEIL1	79661	ucsc.edu	37	chr15	75646086	75646086	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctctgtcccacagggggcaAaggctacgggtcagagagcg	15	12	2	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	NEIL1	NM_001256552	exon6	c.A983G	p.K328R	GGGGCAAAGGCTA		82	2	0.02	83	0	0		36		13	10	0.77	rescued with RNA-seq			G	75646086	A	G	75646086	3	3	47	1	0	0	0	0	1	0	0	0	10364	14	1	4	743	4	NEIL1	15	75646086	Missense_Mutation	SNP	A	TCGA-2G-AAH4-01A-12D-A42Y-10	47162307	75646086	26885306	49	3265											
SOLH	6650	mdanderson.org	37	chr16	602443	602443	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agaagttcgtcagctgcgacGtcatgctggagcctggcgag	15	10	2	1	rs148952789		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_005632	exon11	c.G2650A	p.V884I	TGCGACGTCATGC		34	3	0.09	30	0	0	0			34	0	0				A	602443	G	A	602443	3	1	47	1	0	0	0	0	1	0	0	0	14978	1145	40	1	2680	1	SOLH	16	602443	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10		602443	89752310	50	3266											
UBN1	29855	mdanderson.org	37	chr16	4924755	4924755	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtacatcagtccaaagctAagcaccacagcttgccacgg	8	13	1	0	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_001079514	exon15	c.A2344G	p.K782E	AAAGCTAAGCACC		44	3	0.07	41	0	0				25	0	0				G	4924755	A	G	4924755	3	3	47	1	0	0	0	0	1	0	0	0	16952	363	13	4	2398	4	UBN1	16	4924755	Missense_Mutation	SNP	A	TCGA-2G-AAH4-01A-12D-A42Y-10	4322312	4924755	85429998	51	3267											
CDR2	1039	broad.mit.edu	37	chr16	22359014	22359014	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catagtcacccgcttctgccGctccaggctcagctgggcct	10	17	3	0	rs372632705	alternate_allele	TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	CDR2	NM_001802	exon5	c.C637A	p.R213R	TCTGCCGCTCCAG		128	3	0.02	122	0	0		34		73	0	0				T	22359014	G	T	22359014	2	4	47	1	0	0	0	0	0	0	0	1	3194	1086	38	1		1	CDR2	16	22359014	Silent	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	17434259	22359014	67995739	52	3268											
ZNF629	23361	mdanderson.org	37	chr16	30793488	30793488	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agagctgaggccaaagctttGtttgcattcagggcatttaa	11	7	1	2	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_001080417	exon3	c.C2161A	p.Q721K	AGCTTTGTTTGCA		56	4	0.07	61	0	0				29	0	0				T	30793488	G	T	30793488	3	4	47	1	0	0	0	0	1	0	0	0	18109	1386	48	3	452	3	ZNF629	16	30793488	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	8434474	30793488	59561265	53	3269											
CES2	8824	broad.mit.edu	37	chr16	66974255	66974255	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgggtgtcctgggcttctTcaggtgagactagggctggg	17	9	2	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	CES2	NM_003869	exon4	c.T746C	p.F249S	GCTTCTTCAGGTG		182	3	0.02	120	1	0.0083333333		43		68	0	0				C	66974255	T	C	66974255	3	2	47	1	0	0	0	0	1	0	0	0	3292	1783	62	4	760	4	CES2	16	66974255	Missense_Mutation	SNP	T	TCGA-2G-AAH4-01A-12D-A42Y-10	36180767	66974255	23380498	54	3270											
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	89347466	89347466	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aggggcgccctgtcttccatCgagggtggcatgggagagtc	17	10	1	1	rs140164595		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_001256183	exon9	c.G5484A	p.S1828S	TTCCATCGAGGGT		56	25	0.45	41	0	0	0			92	33	0.36				T	89347466	C	T	89347466	2	4	47	1	0	0	0	0	0	0	0	1	635	871	31	1		1	ANKRD11	16	89347466	Silent	SNP	C	TCGA-2G-AAH4-01A-12D-A42Y-10	22373211	89347466	1007287	55	3271											
CDK10	8558	mdanderson.org	37	chr16	89762054	89762054	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaccaccgcaacaagcgggCcgccccagccacctccgagg	10	21	0	0	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_052988	exon13	c.C1037T	p.A346V	AGCGGGCCGCCCC		41	3	0.07	30	0	0				238	1	0				T	89762054	C	T	89762054	3	4	47	1	0	0	0	0	1	0	0	0	3147	739	26	2	1087	2	CDK10	16	89762054	Missense_Mutation	SNP	C	TCGA-2G-AAH4-01A-12D-A42Y-10	414588	89762054	592699	56	3272											
FBXW10	10517	broad.mit.edu	37	chr17	18659367	18659367	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccttgttagaatgagtacAacctgtggactgcataccag	9	10	0	2	rs3826385	bycluster	TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	FBXW10,NS,carcinoma,0,1	FBXW10	NM_001267585	exon6	c.A1132G	p.N378D	GAGTACAACCTGT		175	47	0.27	113	1	0.0088495575		82	1	0	0					G	18659367	A	G	18659367	3	3	47	1	0	0	0	0	1	0	0	0	5795	130	5	4	1154	4	FBXW10	17	18659367	Missense_Mutation	SNP	A	TCGA-2G-AAH4-01A-12D-A42Y-10		18659367	62535843	57	3273											
FBXW10	10517	broad.mit.edu;mdanderson.org	37	chr17	18673363	18673363	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaagccaatggcagaggTgatcctgtgctgtccttctt	10	9	1	2	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	FBXW10	NM_001267585	exon11	c.T1971C	p.G657G	CAGAGGTGATCCT		178	10	0.06	205	1	0.0048780488		82		0	0					C	18673363	T	C	18673363	5	2	47	1	0	0	0	0	0	0	1	0	5795	1683	59	4	2013	4	FBXW10	17	18673363	Splice_Site	SNP	T	TCGA-2G-AAH4-01A-12D-A42Y-10	13996	18673363	62521847	58	3274											
SUPT6H	6830	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	27026839	27026839	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccagagggattccggtacCggggccagatcttcccaacc	11	15	1	2	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	SUPT6H	NM_003170	exon33	c.C4489T	p.R1497W	CGGTACCGGGGCC		136	5	0.04	98	0	0		165		202	0	0				T	27026839	C	T	27026839	3	4	47	1	0	0	0	0	1	0	0	0	15455	643	23	1	4615	1	SUPT6H	17	27026839	Missense_Mutation	SNP	C	TCGA-2G-AAH4-01A-12D-A42Y-10	8353476	27026839	54168371	59	3275											
AOC2	314	broad.mit.edu	37	chr17	40997660	40997660	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttggccatggggtgttcagCggcctgaggatttttgatgt	15	6	1	2	rs149144895	bycluster;byfrequency;by1000genomes	TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	AOC2	NM_009590	exon1	c.C1017T	p.S339S	GTTCAGCGGCCTG		282	6	0.02	219	0	0		61		3	0	0				T	40997660	C	T	40997660	2	4	47	1	0	0	0	0	0	0	0	1	723	767	27	1		1	AOC2	17	40997660	Silent	SNP	C	TCGA-2G-AAH4-01A-12D-A42Y-10	13970821	40997660	40197550	60	3276											
KIF2B	84643	broad.mit.edu	37	chr17	51902397	51902397	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attactagctgacctccacgTgaagagcaaggtagagtgaa	11	8	0	5	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	KIF2B,right_upper_lobe,carcinoma,+1,1	KIF2B	NM_032559	exon1	c.T2003C	p.V668A	TCCACGTGAAGAG		83	5	0.06	84	0	0		254	1	0	0					C	51902397	T	C	51902397	3	2	47	1	0	0	0	0	1	0	0	0	8339	1696	59	4	2005	4	KIF2B	17	51902397	Missense_Mutation	SNP	T	TCGA-2G-AAH4-01A-12D-A42Y-10	10904737	51902397	29292813	61	3277											
C17orf58	284018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	65989082	65989082	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaggctgggcgacctaCagcccgggctgtggcaccca	13	13	0	0	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_181656	exon2	c.G181C	p.V61L	GACCTACAGCCCG		285	83	0.29	213	0	0				9	3	0.33				G	65989082	C	G	65989082	3	3	47	1	0	0	0	0	1	0	0	0	1875	478	17	5	245	5	C17orf58	17	65989082	Missense_Mutation	SNP	C	TCGA-2G-AAH4-01A-12D-A42Y-10	14086685	65989082	15206128	62	3278											
SOCS3	0	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	76354724	76354724	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagggagtggctgggcagaCggctgctcgggcacctcgga	18	12	0	1	rs371734270		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	SOCS3	NM_003955	exon2	c.G453A	p.P151P	GGCAGACGGCTGC		76	19	0.25	90	1	0.0111111111		16		221	58	0.26				T	76354724	C	T	76354724	2	4	47	1	0	0	0	0	0	0	0	1	14968	523	19	1		1	SOCS3	17	76354724	Silent	SNP	C	TCGA-2G-AAH4-01A-12D-A42Y-10	10365642	76354724	4840486	63	3279											
CARD14	79092	broad.mit.edu	37	chr17	78172269	78172269	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catgctggcgttccagggggAtgcattgctggagcagatca	15	9	1	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	CARD14	NM_024110	exon13	c.A1730G	p.D577G	AGGGGGATGCATT		191	4	0.02	130	1	0.0076923077		98		2	0	0				G	78172269	A	G	78172269	3	3	47	1	0	0	0	0	1	0	0	0	2664	333	12	4	1776	4	CARD14	17	78172269	Missense_Mutation	SNP	A	TCGA-2G-AAH4-01A-12D-A42Y-10	1817545	78172269	3022941	64	3280											
DSC2	1824	broad.mit.edu	37	chr18	28671012	28671012	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttgaaggaaaagtggaaaAggacccaaggagttttctag	13	4	1	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	DSC2	NM_024422	exon4	c.T453C	p.P151P	TGGAAAAGGACCC		203	4	0.02	103	0	0		168		47	0	0				G	28671012	A	G	28671012	2	3	47	1	0	0	0	0	0	0	0	1	4792	59	3	4		4	DSC2	18	28671012	Silent	SNP	A	TCGA-2G-AAH4-01A-12D-A42Y-10		28671012	49406236	65	3281											
GALR1	2587	mdanderson.org	37	chr18	74962637	74962637	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgttcggcctgatcttcGcgctgggtgtgctgggcaac	16	10	1	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_001480	exon1	c.G133T	p.A45S	ATCTTCGCGCTGG		30	2	0.07	61	1	0.0163934426				1	0	0				T	74962637	G	T	74962637	3	4	47	1	0	0	0	0	1	0	0	0	6266	1087	38	1	135	1	GALR1	18	74962637	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	46291625	74962637	3114611	66	3282											
ADAMTSL5	339366	mdanderson.org	37	chr19	1506169	1506169	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtagtcccggtggggtgCcagcatcgggcaggggcagt	19	10	0	0	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_213604	exon12	c.G1261A	p.A421T	GGGGTGCCAGCAT		59	4	0.07	56	0	0				11	0	0				T	1506169	C	T	1506169	3	4	47	1	0	0	0	0	1	0	0	0	277	739	26	2	158	2	ADAMTSL5	19	1506169	Missense_Mutation	SNP	C	TCGA-2G-AAH4-01A-12D-A42Y-10		1506169	57622814	67	3283											
MAP1S	55201	mdanderson.org	37	chr19	17837039	17837039	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaagctggtgcggcacctGgaccgcgtggatgccgtgct	17	11	0	0	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_018174	exon5	c.G846T	p.L282L	GCACCTGGACCGC		57	3	0.05	52	0	0				100	0	0				T	17837039	G	T	17837039	2	4	47	1	0	0	0	0	0	0	0	1	9283	1335	47	3		3	MAP1S	19	17837039	Silent	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	16330870	17837039	41291944	68	3284											
IRGQ	126298	mdanderson.org	37	chr19	44097051	44097051	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cactccggatcctcgccctcGccgtctgtgcgcacgcagac	10	19	1	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	IRGQ,colon,carcinoma,0,1	IRGQ	NM_001007561	exon3	c.C999A	p.G333G	GCCCTCGCCGTCT		39	3	0.08	60	0	0		0	1	6	0	0				T	44097051	G	T	44097051	2	4	47	1	0	0	0	0	0	0	0	1	7882	1074	38	1		1	IRGQ	19	44097051	Silent	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	26260012	44097051	15031932	69	3285											
RPL18	6141	mdanderson.org	37	chr19	49118703	49118703	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccttggagcggacgtaggGtctgtggggagaggagggag	22	6	1	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_000979	exon7	c.C493A	p.P165T	CGTAGGGTCTGTG		51	3	0.06	86	0	0				6036	3	0				T	49118703	G	T	49118703	3	4	47	1	0	0	0	0	1	0	0	0	13615	1275	44	3	77	3	RPL18	19	49118703	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	5021652	49118703	10010280	70	3286											
DBP	1628	mdanderson.org	37	chr19	49136911	49136911	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtgtcccgagaggtcagGccttggggaaacagcacgtg	17	9	1	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_001352	exon3	c.C552A	p.G184G	GGTCAGGCCTTGG		46	3	0.07	31	0	0				21	0	0				T	49136911	G	T	49136911	2	4	47	1	0	0	0	0	0	0	0	1	4280	1217	42	2		2	DBP	19	49136911	Silent	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	18208	49136911	9992072	71	3287											
NLRP12	91662	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr19	54304502	54304502	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagggtctggagcttgcacGtgggatgcctgaggccctca	16	11	2	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	NLRP12,caecum,carcinoma,0,1	NLRP12	NM_144687	exon7	c.T2735A	p.L912H	TTGCACGTGGGAT		50	4	0.08	79	0	0		0	1	2	0	0				T	54304502	G	T	54304502	3	4	47	1	0	0	0	0	1	0	0	0	10520	1145	40	1	466	1	NLRP12	19	54304502	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	5167591	54304502	4824481	72	3288											
TMEM86B	255043	mdanderson.org	37	chr19	55739615	55739615	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cccccacagccgagcacacaAgggctccctggaggagctgg	13	16	0	0	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_173804	exon2	c.T242A	p.L81H	CACACAAGGGCTC		51	3	0.06	55	0	0				17	0	0				T	55739615	A	T	55739615	3	4	47	1	0	0	0	0	1	0	0	0	16268	72	3	5	446	5	TMEM86B	19	55739615	Missense_Mutation	SNP	A	TCGA-2G-AAH4-01A-12D-A42Y-10	1435113	55739615	3389368	73	3289											
ADAM33	80332	mdanderson.org	37	chr20	3653452	3653452	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaccgggagtccggggtcCggggcattggagaggcaagc	20	10	0	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_025220	exon12	c.G1227A	p.P409P	GGGGTCCGGGGCA		18	2	0.11	25	0	0				4	0	0				T	3653452	C	T	3653452	2	4	47	1	0	0	0	0	0	0	0	1	249	639	23	1		1	ADAM33	20	3653452	Silent	SNP	C	TCGA-2G-AAH4-01A-12D-A42Y-10		3653452	59372068	74	3290											
APCDD1L	164284	mdanderson.org	37	chr20	57045759	57045759	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggcagtggggttcccagcGcaggcagctgcccccggcct	15	16	0	0	rs147147447	bycluster	TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_153360	exon2	c.C94T	p.R32C	CCCAGCGCAGGCA		44	3	0.07	40	0	0	0			1	0	0				A	57045759	G	A	57045759	3	1	47	1	0	0	0	0	1	0	0	0	762	1087	38	1	1423	1	APCDD1L	20	57045759	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	53392307	57045759	5979761	75	3291											
ZNF512B	57473	mdanderson.org	37	chr20	62594730	62594730	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagccgtcccatctgcttcaGcaccttgcgcagcctctcgc	8	19	3	0	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_020713	exon11	c.C1762T	p.L588L	GCTTCAGCACCTT		24	2	0.08	18	0	0				36	0	0				A	62594730	G	A	62594730	2	1	47	1	0	0	0	0	0	0	0	1	18013	962	34	2		2	ZNF512B	20	62594730	Silent	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	5548971	62594730	430790	76	3292											
RIBC2	26150	bcgsc.ca	37	chr22	45813494	45813494	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttccagctgctgaaatgaGgcaaaatgacaaaatcatgt	8	8	2	3	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	RIBC2	.	.	.	.	AAATGAGGCAAAA		171	6	0.04	185	0	0		25		5	0	0				T	45813494	G	T	45813494	3	4	47	1	0	0	0	0	1	0	0	0	13402	1000	35	3	218	3	RIBC2	22	45813494	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10		45813494	5491072	77	3293											
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr22	46658471	46658471	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcgatggcgcgcgcggccGggcagtccagctgcaccgag	19	14	0	0	rs149432283	bycluster;byfrequency;alternate_allele	TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_006071	exon1	c.C749A	p.P250Q	GCGGCCGGGCAGT		67	4	0.06	62	0	0				0	0					T	46658471	G	T	46658471	3	4	47	1	0	0	0	0	1	0	0	0	12017	1116	39	1	6016	1	PKDREJ	22	46658471	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	844977	46658471	4646095	78	3294											
SHANK3	85358	ucsc.edu;bcgsc.ca	37	chr22	51117453	51117453	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcaccctcagaccctgCtggacctgggggcttcacct	10	17	3	1	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	SHANK3	NM_033517	exon6	c.C607T	p.L203L	ACCCTGCTGGACC		29	4	0.14	35	0	0		96		15	0	0				T	51117453	C	T	51117453	2	4	47	1	0	0	0	0	0	0	0	1	14320	796	28	2		2	SHANK3	22	51117453	Silent	SNP	C	TCGA-2G-AAH4-01A-12D-A42Y-10	4458982	51117453	187113	79	3295											
CTPS2	56474	broad.mit.edu	37	chrX	16711311	16711311	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgcgcggacgctgttttGggtgggtttggttttttgtt	16	5	0	0	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	CTPS2	NM_001144002	exon6	c.C592A	p.Q198K	TGTTTTGGGTGGG		205	4	0.02	132	0	0		49		68	0	0				T	16711311	G	T	16711311	3	4	47	1	0	0	0	0	1	0	0	0	4047	1357	47	3	1220	3	CTPS2	23	16711311	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10		16711311	138559249	80	3296											
CCNB3	85417	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	50053935	50053935	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgaagatgtctaccatcaaTgaggcagtcctcttcgaaga	9	9	3	4	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	.	NM_033031	exon5	c.T2766C	p.N922N	CATCAATGAGGCA		214	10	0.05	162	0	0				1	0	0				C	50053935	T	C	50053935	2	2	47	1	0	0	0	0	0	0	0	1	2936	1461	51	4		4	CCNB3	23	50053935	Silent	SNP	T	TCGA-2G-AAH4-01A-12D-A42Y-10	33342624	50053935	105216625	81	3297											
CYLC1	1538	broad.mit.edu	37	chrX	83129489	83129489	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagactacattcaatgaaaaAggggaaaaagcaagtacagg	10	5	1	2	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	CYLC1	NM_021118	exon4	c.A1773G	p.K591K	TGAAAAAGGGGAA		289	4	0.01	232	0	0		272		0	0					G	83129489	A	G	83129489	2	3	47	1	0	0	0	0	0	0	0	1	4164	69	3	4		4	CYLC1	23	83129489	Silent	SNP	A	TCGA-2G-AAH4-01A-12D-A42Y-10	33075554	83129489	72141071	82	3298											
RNF128	79589	broad.mit.edu	37	chrX	105937558	105937558	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcagaaaaaattcaaacagCgggcagaagaaatgctgatg	10	6	2	4	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	RNF128	NM_024539	exon1	c.C326T	p.A109V	AAACAGCGGGCAG		318	4	0.01	252	0	0		74		4	0	0				T	105937558	C	T	105937558	3	4	47	1	0	0	0	0	1	0	0	0	13487	768	27	1	328	1	RNF128	23	105937558	Missense_Mutation	SNP	C	TCGA-2G-AAH4-01A-12D-A42Y-10	22808069	105937558	49333002	83	3299											
NKRF	55922	broad.mit.edu	37	chrX	118724147	118724147	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgacagatggataagtgGgctgtgttttttgaagaatt	12	2	0	4	novel		TCGA-2G-AAH4-01A-12D-A42Y-10	TCGA-2G-AAH4-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a76ac28a-7e0c-4ca4-ad0e-109bf04deac8	09fe59f5-a2c3-4148-aac8-4b370b8cfae1	.	NKRF	NM_001173487	exon4	c.C1286A	p.P429H	TAAGTGGGCTGTG		89	3	0.03	52	2	0.0384615385		121		36	0	0				T	118724147	G	T	118724147	3	4	47	1	0	0	0	0	1	0	0	0	10493	1232	43	3	835	3	NKRF	23	118724147	Missense_Mutation	SNP	G	TCGA-2G-AAH4-01A-12D-A42Y-10	12786589	118724147	36546413	84	3300											
OPRD1	4985	mdanderson.org	37	chr1	29189700	29189700	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccctgcggccgcccagacCccagcagcttcagccgcgcc	11	21	1	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_000911	exon3	c.C1024T	p.P342S	CCAGACCCCAGCA		23	2	0.09	33	0	0				0	0					T	29189700	C	T	29189700	3	4	48	1	0	0	0	0	1	0	0	0	10931	623	22	3	1034	3	OPRD1	1	29189700	Missense_Mutation	SNP	C	TCGA-2G-AAH8-01A-11D-A42Y-10		29189700	220060921	1	3301											
CELF3	11189	ucsc.edu;bcgsc.ca	37	chr1	151678746	151678746	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgctgCtgttgaggtggtggtggggg	20	7	0	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	CELF3	NM_007185	exon10	c.G1080A	p.Q360Q	CTGCTGCTGTTGA		40	4	0.1	29	0	0		49		0	0					T	151678746	C	T	151678746	2	4	48	1	0	0	0	0	0	0	0	1	3239	796	28	2		2	CELF3	1	151678746	Silent	SNP	C	TCGA-2G-AAH8-01A-11D-A42Y-10	122489046	151678746	97571875	2	3302											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	152280480	152280480	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctggagctctctgcagaGtgcccatgaccggctctgtc	12	13	3	2	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_002016	exon3	c.C6882A	p.H2294Q	TGCAGAGTGCCCA		336	82	0.24	242	0	0				0	0					T	152280480	G	T	152280480	3	4	48	1	0	0	0	0	1	0	0	0	5954	1020	36	3	5307	3	FLG	1	152280480	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	601734	152280480	96970141	3	3303											
OR6K6	128371	broad.mit.edu	37	chr1	158725536	158725536	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttttgttatccttgctcccTttttcaaccccatcatctat	2	14	3	0	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	OR6K6	NM_001005184	exon1	c.T931C	p.F311L	GCTCCCTTTTTCA		208	6	0.03	212	0	0		81		0	0					C	158725536	T	C	158725536	3	2	48	1	0	0	0	0	1	0	0	0	11250	1609	56	4	933	4	OR6K6	1	158725536	Missense_Mutation	SNP	T	TCGA-2G-AAH8-01A-11D-A42Y-10	6445056	158725536	90525085	4	3304											
EPT1	85465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	26587175	26587175	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcatttcttaacagtacagTgctgtggataccaatccact	6	10	2	0	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	.	.	.	.	GTACAGTGCTGTG		58	22	0.38	55	0	0				22	8	0.36				G	26587175	T	G	26587175	3	3	48	1	0	0	0	0	1	0	0	0	5227	1693	59	4	69	4	EPT1	2	26587175	Missense_Mutation	SNP	T	TCGA-2G-AAH8-01A-11D-A42Y-10		26587175	216612198	5	3305											
GPAT2	150763	broad.mit.edu	37	chr2	96687959	96687959	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctagtttttcctgattgtccAggctggcaaaagtaggggac	12	8	0	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	GPAT2,trunk,malignant_melanoma,0,2	GPAT2	NM_207328	exon22	c.T2336A	p.L779Q	TTGTCCAGGCTGG		558	5	0.01	522	1	0.0019157088		46	2	4	0	0				T	96687959	A	T	96687959	3	4	48	1	0	0	0	0	1	0	0	0	6628	188	7	5	55	5	GPAT2	2	96687959	Missense_Mutation	SNP	A	TCGA-2G-AAH8-01A-11D-A42Y-10	70100784	96687959	146511414	6	3306											
CRYGB	1419	broad.mit.edu	37	chr2	209007463	209007463	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cggcctcagcagatactgccTccccctgtagttgggcatct	10	15	2	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	CRYGB,trunk,malignant_melanoma,+1,1	CRYGB	NM_005210	exon3	c.A427G	p.R143G	ACTGCCTCCCCCT		276	4	0.01	260	1	0.0038461538		24	1	1	0	0				C	209007463	T	C	209007463	3	2	48	1	0	0	0	0	1	0	0	0	3938	1550	54	4	104	4	CRYGB	2	209007463	Missense_Mutation	SNP	T	TCGA-2G-AAH8-01A-11D-A42Y-10	112319504	209007463	34191910	7	3307											
BRPF1	7862	mdanderson.org	37	chr3	9783075	9783075	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catgacttggagcgagctcgGctgctcgtggaattgatccg	14	10	0	2	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_004634	exon5	c.G1806T	p.R602R	AGCTCGGCTGCTC		44	3	0.07	38	0	0				53	0	0				T	9783075	G	T	9783075	2	4	48	1	0	0	0	0	0	0	0	1	1522	1190	42	2		2	BRPF1	3	9783075	Silent	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10		9783075	188239355	8	3308											
GPX1	2876	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	49395636	49395636	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	caggctcacaggctccccgcCggccagcgggcgcgccgaga	15	18	1	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	.	.	.	.	CCCCGCCGGCCAG		111	33	0.3	97	0	0				1310	421	0.32				A	49395636	C	A	49395636	3	1	48	1	0	0	0	0	1	0	0	0	6779	652	23	1	588	1	GPX1	3	49395636	Missense_Mutation	SNP	C	TCGA-2G-AAH8-01A-11D-A42Y-10	39612561	49395636	148626794	9	3309											
TRH	7200	broad.mit.edu	37	chr3	129695840	129695840	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caaaggagctgggaagaagaGgaggaggaggaagagagaga	20	2	0	4	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	TRH,right_upper_lobe,carcinoma,0,2	TRH	NM_007117	exon3	c.G510A	p.E170E	AGAAGAGGAGGAG		62	3	0.05	52	0	0		30	2	0	0					A	129695840	G	A	129695840	2	1	48	1	0	0	0	0	0	0	0	1	16538	991	35	3		3	TRH	3	129695840	Silent	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	80300204	129695840	68326590	10	3310											
PIK3CB	5291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	138374244	138374244	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgatcgttaagatctgtagTctttccgaactgtgtgggcc	11	9	2	2	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	PIK3CB,NS,carcinoma,-1,4	PIK3CB	NM_006219	exon22	c.A3200T	p.D1067V	CTGTAGTCTTTCC		181	47	0.26	185	0	0		-1	4	95	26	0.27				A	138374244	T	A	138374244	3	1	48	1	0	0	0	0	1	0	0	0	11961	1667	58	5	14	5	PIK3CB	3	138374244	Missense_Mutation	SNP	T	TCGA-2G-AAH8-01A-11D-A42Y-10	8678404	138374244	59648186	11	3311											
IGF2BP2	10644	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	185407330	185407330	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgggctcgctgagggggcgAaggggagctcacctcttcat	16	11	3	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	IGF2BP2	NM_001007225	exon6	c.T490A	p.S164T	GGGGCGAAGGGGA		196	54	0.28	201	1	0.0049751244		69		76	22	0.29				T	185407330	A	T	185407330	3	4	48	1	0	0	0	0	1	0	0	0	7617	246	9	5	1353	5	IGF2BP2	3	185407330	Missense_Mutation	SNP	A	TCGA-2G-AAH8-01A-11D-A42Y-10	47033086	185407330	12615100	12	3312											
FBXO45	200933	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	196296078	196296078	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgcctgcacggcgatgagAacagcgaggtgtggcggagc	18	10	0	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	FBXO45	NM_001105573	exon1	c.A223G	p.N75D	GATGAGAACAGCG		74	25	0.34	64	1	0.015625		18		53	16	0.3				G	196296078	A	G	196296078	3	3	48	1	0	0	0	0	1	0	0	0	5786	246	9	4	225	4	FBXO45	3	196296078	Missense_Mutation	SNP	A	TCGA-2G-AAH8-01A-11D-A42Y-10	10888748	196296078	1726352	13	3313											
WDR19	57728	mdanderson.org	37	chr4	39218846	39218846	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcactttttgaaggcaaaGtccagttacatttggtaagt	9	7	0	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_025132	exon13	c.G1342T	p.V448F	GGCAAAGTCCAGT		47	3	0.06	77	0	0				8	0	0				T	39218846	G	T	39218846	3	4	48	1	0	0	0	0	1	0	0	0	17338	1029	36	3	1392	3	WDR19	4	39218846	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10		39218846	151935430	14	3314											
BMP3	651	bcgsc.ca;mdanderson.org	37	chr4	81952602	81952602	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgagctgcagccgcaagacaAggtctctgaacacatgctgc	11	13	1	2	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	BMP3	NM_001201	exon1	c.A164G	p.K55R	AAGACAAGGTCTC		116	5	0.04	131	0	0		59		0	0					G	81952602	A	G	81952602	3	3	48	1	0	0	0	0	1	0	0	0	1460	72	3	4	166	4	BMP3	4	81952602	Missense_Mutation	SNP	A	TCGA-2G-AAH8-01A-11D-A42Y-10	42733756	81952602	109201674	15	3315											
ADH1C	126	broad.mit.edu	37	chr4	100261864	100261864	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgacaacataacagggaagCcatctggaataaagtgaaca	9	7	1	2	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	.	.	.	.	GGGAAGCCATCTG		75	3	0.04	143	0	0				0	0					T	100261864	C	T	100261864	1	4	48	0	1	0	0	0	0	0	0	0	308	739	26	2		2	ADH1C	4	100261864	RNA	SNP	C	TCGA-2G-AAH8-01A-11D-A42Y-10	18309262	100261864	90892412	16	3316											
NDST4	64579	mdanderson.org	37	chr4	115751039	115751039	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacaccaaaaacccttttgGggatcaaacctacagtacat	6	11	1	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_022569	exon13	c.C2406A	p.P802P	CTTTTGGGGATCA		57	3	0.05	93	0	0				0	0					T	115751039	G	T	115751039	2	4	48	1	0	0	0	0	0	0	0	1	10304	1219	43	3		3	NDST4	4	115751039	Silent	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	15489175	115751039	75403237	17	3317											
OTUD4	54726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	146059616	146059616	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attaacactggcctcagtctGcataggaaagtgggcatcag	11	9	3	0	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_001102653	exon21	c.C2116A	p.Q706K	CAGTCTGCATAGG		97	33	0.34	111	0	0				58	28	0.48				T	146059616	G	T	146059616	3	4	48	1	0	0	0	0	1	0	0	0	11360	1328	46	2	1037	2	OTUD4	4	146059616	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	30308577	146059616	45094660	18	3318											
PLEKHG4B	153478	mdanderson.org	37	chr5	163611	163611	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcagagccggagtctgtccTccccctcggggctccaccct	10	19	2	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_052909	exon11	c.T2356C	p.S786P	CTGTCCTCCCCCT		59	3	0.05	74	0	0				1	0	0				C	163611	T	C	163611	3	2	48	1	0	0	0	0	1	0	0	0	12119	1551	54	4	2398	4	PLEKHG4B	5	163611	Missense_Mutation	SNP	T	TCGA-2G-AAH8-01A-11D-A42Y-10		163611	180751649	19	3319											
HMGCR	3156	broad.mit.edu	37	chr5	74654641	74654641	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctgtcattccagccaagGttgtcagagaagtgagtgac	12	8	2	3	rs373896859		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	HMGCR	NM_000859	exon16	c.G2146T	p.V716F	GCCAAGGTTGTCA		108	3	0.03	123	0	0		53		160	0	0				T	74654641	G	T	74654641	3	4	48	1	0	0	0	0	1	0	0	0	7271	1261	44	3	2204	3	HMGCR	5	74654641	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	74491030	74654641	106260619	20	3320											
GRAMD3	65983	broad.mit.edu	37	chr5	125809020	125809020	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctttgtatcagaaaactGgatttgttttcattccaaag	7	7	3	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	GRAMD3	NM_001146319	exon5	c.G491T	p.W164L	AAAACTGGATTTG		239	6	0.03	258	0	0		30		5	0	0				T	125809020	G	T	125809020	3	4	48	1	0	0	0	0	1	0	0	0	6791	1357	47	3	678	3	GRAMD3	5	125809020	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	51154379	125809020	55106240	21	3321											
LMNB1	4001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	126171941	126171941	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagagcatccaatagaagCtgtgcaattatgtaaaattt	7	7	0	2	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_005573	exon11	c.C1746A	p.S582R	TAGAAGCTGTGCA		243	52	0.21	267	0	0				259	80	0.31				A	126171941	C	A	126171941	3	1	48	1	0	0	0	0	1	0	0	0	8889	796	28	2	1788	2	LMNB1	5	126171941	Missense_Mutation	SNP	C	TCGA-2G-AAH8-01A-11D-A42Y-10	362921	126171941	54743319	22	3322											
MEGF10	84466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr5	126755897	126755897	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaatgcgaacttccctgcCaggtatgcacaaatcagcgc	9	12	1	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_032446	exon13	c.C1588T	p.Q530X	CCCTGCCAGGTAT		58	13	0.22	67	0	0				0	0					T	126755897	C	T	126755897	4	4	48	1	0	0	0	0	0	1	0	0	9509	595	21	3	1630	3	MEGF10	5	126755897	Nonsense_Mutation	SNP	C	TCGA-2G-AAH8-01A-11D-A42Y-10	583956	126755897	54159363	23	3323											
VARS2	57176	broad.mit.edu	37	chr6	30888845	30888845	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcccctttctctccaggctGtggagtcgggggccctggag	15	13	1	0	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	VARS2	NM_001167734	exon16	c.G1573T	p.V525L	CAGGCTGTGGAGT		116	4	0.03	109	0	0		60		96	0	0				T	30888845	G	T	30888845	3	4	48	1	0	0	0	0	1	0	0	0	17183	1377	48	3	1635	3	VARS2	6	30888845	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10		30888845	140226222	24	3324											
ME1	4199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	83949272	83949272	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatacctctccagctccttGgaatagtattgtttgatcag	7	9	2	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_002395	exon8	c.C898G	p.Q300E	CTCCTTGGAATAG		105	13	0.12	125	0	0				8	2	0.25				C	83949272	G	C	83949272	3	2	48	1	0	0	0	0	1	0	0	0	9466	1357	47	5	848	5	ME1	6	83949272	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	53060427	83949272	87165795	25	3325											
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	90467976	90467976	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	caagaaccaaaccctcacctGtttcttattcctggtgggag	8	12	2	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_014611	exon19	c.C2700G	p.N900K	TCACCTGTTTCTT		107	22	0.21	100	0	0				40	6	0.15				C	90467976	G	C	90467976	3	2	48	1	0	0	0	0	1	0	0	0	9464	1368	48	5	14426	5	MDN1	6	90467976	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	6518704	90467976	80647091	26	3326											
C6orf170	221322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	121526289	121526289	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagcttcagaattcaaaatTataagtctatcaataatatc	3	6	4	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_152730	exon22	c.A2502C	p.I834I	CAAAATTATAAGT		392	69	0.18	376	0	0				3	1	0.33				G	121526289	T	G	121526289	2	3	48	1	0	0	0	0	0	0	0	1	2358	1744	61	4		4	C6orf170	6	121526289	Silent	SNP	T	TCGA-2G-AAH8-01A-11D-A42Y-10	31058313	121526289	49588778	27	3327											
HOXA4	3201	mdanderson.org	37	chr7	27170154	27170154	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaggaggcagtgggctctcGgccgccgcccgcgtgaggga	19	12	1	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_002141	exon1	c.C199A	p.R67R	GCTCTCGGCCGCC		11	2	0.18	24	0	0				0	0					T	27170154	G	T	27170154	2	4	48	1	0	0	0	0	0	0	0	1	7334	1124	39	1		1	HOXA4	7	27170154	Silent	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10		27170154	131968509	28	3328											
ZNF680	340252	ucsc.edu	37	chr7	63981631	63981631	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctagtaaggtgtgaggaccGgttaaaagctttgccacatt	11	7	1	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	ZNF680,NS,carcinoma,+1,1	ZNF680	NM_178558	exon4	c.C1501T	p.R501W	AGGACCGGTTAAA		179	1	0.01	121	0	0		58	1	51	15	0.29				A	63981631	G	A	63981631	3	1	48	1	0	0	0	0	1	0	0	0	18142	1115	39	1	95	1	ZNF680	7	63981631	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	36811477	63981631	95157032	29	3329											
ELN	2006	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	73466166	73466166	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctggaattggaggcatcGcaggtaacatctgtcccagc	11	11	1	0	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	ELN	NM_001081753	exon16	c.G901T	p.A301S	GGCATCGCAGGTA		191	34	0.18	134	1	0.0074626866		81		0	0					T	73466166	G	T	73466166	3	4	48	1	0	0	0	0	1	0	0	0	5099	1087	38	1	963	1	ELN	7	73466166	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	9484535	73466166	85672497	30	3330											
MLL5	55904	broad.mit.edu	37	chr7	104747054	104747054	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccacacctactccttccccGtatgctacaccaactcacac	2	20	1	0	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	MLL5	NM_018682	exon19	c.G2682A	p.P894P	TTCCCCGTATGCT		402	6	0.01	207	0	0		173		26	0	0				A	104747054	G	A	104747054	2	1	48	1	0	0	0	0	0	0	0	1	9671	1132	40	1		1	MLL5	7	104747054	Silent	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	31280888	104747054	54391609	31	3331											
GSTK1	373156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	142961249	142961249	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcctcataacagggatcaTgaaagacagtggtaggaagg	13	7	2	2	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_001143681	exon2	c.T143A	p.M48K	GGATCATGAAAGA		211	24	0.11	163	0	0				103	17	0.17				A	142961249	T	A	142961249	3	1	48	1	0	0	0	0	1	0	0	0	6876	1464	51	5	149	5	GSTK1	7	142961249	Missense_Mutation	SNP	T	TCGA-2G-AAH8-01A-11D-A42Y-10	38214195	142961249	16177414	32	3332											
ATG9B	285973	broad.mit.edu;mdanderson.org	37	chr7	150713893	150713893	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggtgcacgaagaggttgGccaggaaggctcaggctggg	20	7	1	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	ATG9B	.	.	.	.	AGGTTGGCCAGGA		117	6	0.05	88	0	0		51		2	0	0				T	150713893	G	T	150713893	3	4	48	1	0	0	0	0	1	0	0	0	1102	1203	42	2	484	2	ATG9B	7	150713893	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	7752644	150713893	8424770	33	3333											
GALNTL5	168391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	151716815	151716815	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgagttaaggaaacgactgGgttgcaagtcatttcagtgg	13	5	2	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_145292	exon9	c.G1261C	p.G421R	CGACTGGGTTGCA		197	34	0.17	116	0	0				1	0	0				C	151716815	G	C	151716815	3	2	48	1	0	0	0	0	1	0	0	0	6263	1232	43	5	1291	5	GALNTL5	7	151716815	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	1002922	151716815	7421848	34	3334											
ATAD2	29028	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	124383988	124383988	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctacaacttcgacgcactTcaacatcaccattatcttca	2	15	4	0	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	ATAD2	NM_014109	exon4	c.A458C	p.E153A	CGCACTTCAACAT		383	80	0.21	269	2	0.0074349442		160		90	15	0.17				G	124383988	T	G	124383988	3	3	48	1	0	0	0	0	1	0	0	0	1070	1783	62	4	3814	4	ATAD2	8	124383988	Missense_Mutation	SNP	T	TCGA-2G-AAH8-01A-11D-A42Y-10		124383988	21980034	35	3335											
EPPK1	83481	mdanderson.org	37	chr8	144946192	144946192	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctccaggggcagccggagCctgcgtgctggacagaccag	16	14	0	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_031308	exon1	c.G1230A	p.R410R	CCGGAGCCTGCGT		38	3	0.08	23	0	0				5	0	0				T	144946192	C	T	144946192	2	4	48	1	0	0	0	0	0	0	0	1	5218	738	26	2		2	EPPK1	8	144946192	Silent	SNP	C	TCGA-2G-AAH8-01A-11D-A42Y-10	20562204	144946192	1417830	36	3336											
BAAT	570	mdanderson.org	37	chr9	104125233	104125233	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacttgctttaggtaaataGccatagatagtccaatctgt	8	7	1	2	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_001127610	exon4	c.C734A	p.A245D	TAAATAGCCATAG		48	3	0.06	82	0	0				0	0					T	104125233	G	T	104125233	3	4	48	1	0	0	0	0	1	0	0	0	1278	971	34	2	526	2	BAAT	9	104125233	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10		104125233	37088198	37	3337											
ZMYND19	116225	ucsc.edu;bcgsc.ca	37	chr9	140481474	140481474	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagccccacggcaccagttGcaggttgtccaggcgattgt	12	14	0	0	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	ZMYND19	NM_138462	exon4	c.C304A	p.Q102K	CCAGTTGCAGGTT		40	4	0.1	35	0	0		16		274	0	0				T	140481474	G	T	140481474	3	4	48	1	0	0	0	0	1	0	0	0	17767	1328	46	2	391	2	ZMYND19	9	140481474	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	36356241	140481474	731957	38	3338											
PFKFB3	5209	bcgsc.ca	37	chr10	6271098	6271098	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaggtgtgatgaggaatgCagcctgagatgctgaaaaga	15	4	0	5	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	PFKFB3	.	.	.	.	GGAATGCAGCCTG		136	6	0.04	142	0	0		82		0	0					T	6271098	C	T	6271098	3	4	48	1	0	0	0	0	1	0	0	0	11809	725	25	2		2	PFKFB3	10	6271098	Missense_Mutation	SNP	C	TCGA-2G-AAH8-01A-11D-A42Y-10		6271098	129263649	39	3339											
MRC1	4360	broad.mit.edu	37	chr10	18138582	18138582	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gttacaagattcacagagatGagaaaaaaatccagagggat	10	5	1	4	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	MRC1	NM_002438	exon7	c.G1138T	p.E380X	AGAGATGAGAAAA		504	4	0.01	409	0	0		13		3	0	0				T	18138582	G	T	18138582	4	4	48	1	0	0	0	0	0	1	0	0	9804	1291	45	3	5655	3	MRC1	10	18138582	Nonsense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	11867484	18138582	117396165	40	3340											
ENTPD7	57089	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	101451184	101451184	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaattggcagcaggacggaGaaggacagtagggatactgg	18	5	0	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	ENTPD7	NM_020354	exon8	c.G752T	p.R251I	GACGGAGAAGGAC		103	5	0.05	99	1	0.0101010101		44		8	0	0				T	101451184	G	T	101451184	3	4	48	1	0	0	0	0	1	0	0	0	5172	942	33	3	778	3	ENTPD7	10	101451184	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	83312602	101451184	34083563	41	3341											
AP2A2	161	mdanderson.org	37	chr11	1000510	1000510	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggccccccaccctcctccGgcggcagcgggctgctcgtg	14	20	0	0	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_001242837	exon15	c.G2038T	p.G680C	TCCTCCGGCGGCA		27	2	0.07	33	0	0				23	0	0				T	1000510	G	T	1000510	3	4	48	1	0	0	0	0	1	0	0	0	736	1116	39	1	2093	1	AP2A2	11	1000510	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10		1000510	134006006	42	3342											
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	1269803	1269803	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcacaaccaccacacccaCaaccagtggctccacggtga	7	18	0	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_002458	exon31	c.C11693G	p.T3898R	CACCCACAACCAG		249	57	0.23	256	0	0				0	0					G	1269803	C	G	1269803	3	3	48	1	0	0	0	0	1	0	0	0	10026	478	17	5	11824	5	MUC5B	11	1269803	Missense_Mutation	SNP	C	TCGA-2G-AAH8-01A-11D-A42Y-10	269293	1269803	133736713	43	3343											
TNKS1BP1	85456	mdanderson.org	37	chr11	57076874	57076874	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctccagtcctgctgccctGggctaaatgctgcctctcgc	11	16	1	0	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_033396	exon6	c.C3311A	p.P1104Q	TGCCCTGGGCTAA		49	3	0.06	71	0	0				80	0	0				T	57076874	G	T	57076874	3	4	48	1	0	0	0	0	1	0	0	0	16379	1348	47	3	1902	3	TNKS1BP1	11	57076874	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	55807071	57076874	77929642	44	3344											
OR5B17	219965	mdanderson.org	37	chr11	58126036	58126036	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagtgatgaatcacattGgacatgcagaaagagaggcg	12	5	1	4	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	OR5B17,NS,malignant_melanoma,-1,1	OR5B17	NM_001005489	exon1	c.C507A	p.S169S	CACATTGGACATG		57	3	0.05	64	0	0		-1	1	0	0					T	58126036	G	T	58126036	2	4	48	1	0	0	0	0	0	0	0	1	11195	1335	47	3		3	OR5B17	11	58126036	Silent	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	1049162	58126036	76880480	45	3345											
PPFIA1	8500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	70224251	70224251	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcaaacttccgggtgaCttcttctatgtcttccccct	6	16	3	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_177423	exon26	c.C3500G	p.T1167S	GGGTGACTTCTTC		66	28	0.42	103	0	0				20	1	0.05				G	70224251	C	G	70224251	3	3	48	1	0	0	0	0	1	0	0	0	12353	565	20	5	3598	5	PPFIA1	11	70224251	Missense_Mutation	SNP	C	TCGA-2G-AAH8-01A-11D-A42Y-10	12098215	70224251	64782265	46	3346											
MYO7A	4647	mdanderson.org	37	chr11	76919803	76919803	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctgtggaccaccacggtGccagggaaggatcccatggc	14	12	0	0	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_000260	exon44	c.G6006T	p.V2002V	CACGGTGCCAGGG		39	3	0.08	58	0	0				8	0	0				T	76919803	G	T	76919803	2	4	48	1	0	0	0	0	0	0	0	1	10129	1306	46	2		2	MYO7A	11	76919803	Silent	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	6695552	76919803	58086713	47	3347											
RSF1	51773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	77451960	77451960	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cttgaatttgagattgtcatCaaactgacactcacagaggt	8	8	3	4	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_016578	exon4	c.G394C	p.D132H	TGTCATCAAACTG		88	29	0.33	151	0	0				13	9	0.69				G	77451960	C	G	77451960	3	3	48	1	0	0	0	0	1	0	0	0	13750	826	29	5	3983	5	RSF1	11	77451960	Missense_Mutation	SNP	C	TCGA-2G-AAH8-01A-11D-A42Y-10	532157	77451960	57554556	48	3348											
ERC1	23085	broad.mit.edu	37	chr12	1292505	1292505	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcatcctcaggactgaaaaAggactcacggcttaagacac	10	11	2	2	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	ERC1	NM_178040	exon11	c.A2075G	p.K692R	TGAAAAAGGACTC		956	5	0.01	512	1	0.001953125		95		127	0	0				G	1292505	A	G	1292505	3	3	48	1	0	0	0	0	1	0	0	0	5238	72	3	4	2113	4	ERC1	12	1292505	Missense_Mutation	SNP	A	TCGA-2G-AAH8-01A-11D-A42Y-10		1292505	132559390	49	3349											
NRIP2	83714	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	2943815	2943815	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgatgcctcaccaagtccTtggaggtgccgagcctcttg	13	12	2	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_031474	exon1	c.A335T	p.K112M	AAGTCCTTGGAGG		150	12	0.08	64	0	0				2	0	0				A	2943815	T	A	2943815	3	1	48	1	0	0	0	0	1	0	0	0	10700	1609	56	5	534	5	NRIP2	12	2943815	Missense_Mutation	SNP	T	TCGA-2G-AAH8-01A-11D-A42Y-10	1651310	2943815	130908080	50	3350											
ATN1	1822	mdanderson.org	37	chr12	7045879	7045879	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaacacatcaccatcaccaCcagcaacagcaacagcagca	4	17	3	0	rs141514883	bycluster	TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_001007026	exon5	c.C1449A	p.H483Q	TCACCACCAGCAA		225	10	0.04	88	0	0	0			280	0	0				A	7045879	C	A	7045879	3	1	48	1	0	0	0	0	1	0	0	0	1110	506	18	3	1463	3	ATN1	12	7045879	Missense_Mutation	SNP	C	TCGA-2G-AAH8-01A-11D-A42Y-10	4102064	7045879	126806016	51	3351											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	25380276	25380276	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcattgcactgtactcctctTgacctgctgtgtcgagaata	8	11	2	2	rs121913240	bycluster	TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	KRAS_ENST00000256078,colon,carcinoma,+1,429	KRAS_ENST00000256078	NM_004985	exon3	c.A182T	p.Q61L	TCCTCTTGACCTG		225	26	0.12	116	0	0		1	429	104	6	0.06				A	25380276	T	A	25380276	3	1	48	1	0	0	0	0	1	0	0	0	8480	1812	63	5	520	5	KRAS	12	25380276	Missense_Mutation	SNP	T	TCGA-2G-AAH8-01A-11D-A42Y-10	18334397	25380276	108471619	52	3352											
KRT75	9119	broad.mit.edu	37	chr12	52827741	52827741	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttggatgcctccagggggAcacacggggaagctggggcc	17	11	1	0	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	KRT75	NM_004693	exon1	c.T348C	p.C116C	AGGGGGACACACG		283	5	0.02	232	0	0		75		0	0					G	52827741	A	G	52827741	2	3	48	1	0	0	0	0	0	0	0	1	8530	273	10	4		4	KRT75	12	52827741	Silent	SNP	A	TCGA-2G-AAH8-01A-11D-A42Y-10	27447465	52827741	81024154	53	3353											
DCTN2	10540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	57926527	57926527	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atttaatacctgtagccgagCctccacttgatccaaaactg	6	12	0	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_001261412	exon10	c.G847A	p.A283T	GCCGAGCCTCCAC		219	42	0.19	169	0	0				553	127	0.23				T	57926527	C	T	57926527	3	4	48	1	0	0	0	0	1	0	0	0	4330	739	26	2	384	2	DCTN2	12	57926527	Missense_Mutation	SNP	C	TCGA-2G-AAH8-01A-11D-A42Y-10	5098786	57926527	75925368	54	3354											
TSPAN19	144448	broad.mit.edu	37	chr12	85408282	85408282	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggtcacatttctgcatggAttatattcttgatgtttttg	8	5	3	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	TSPAN19	NM_001100917	exon9	c.T731A	p.I244N	GCATGGATTATAT		454	8	0.02	463	0	0		23		0	0					T	85408282	A	T	85408282	3	4	48	1	0	0	0	0	1	0	0	0	16703	333	12	5	19	5	TSPAN19	12	85408282	Missense_Mutation	SNP	A	TCGA-2G-AAH8-01A-11D-A42Y-10	27481755	85408282	48443613	55	3355											
RAN	5901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	131357394	131357394	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaacagcttgtattggttgGtgatggtggtactggaaaaa	13	4	1	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_006325	exon3	c.G50A	p.G17D	TGGTTGGTGATGG		244	43	0.18	155	0	0				2292	502	0.22				A	131357394	G	A	131357394	3	1	48	1	0	0	0	0	1	0	0	0	13075	1261	44	3	56	3	RAN	12	131357394	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	45949112	131357394	2494501	56	3356											
MYO16	23026	mdanderson.org	37	chr13	109772789	109772789	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gatttgtgcctacagttgcaGagaaaaattataacctgcca	8	8	0	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	MYO16,NS,carcinoma,0,1	MYO16	NM_001198950	exon29	c.G3510T	p.Q1170H	GTTGCAGAGAAAA		45	3	0.07	66	0	0		0	1	8	0	0				T	109772789	G	T	109772789	3	4	48	1	0	0	0	0	1	0	0	0	10111	933	33	3	3554	3	MYO16	13	109772789	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10		109772789	5397089	57	3357											
POMT2	29954	mdanderson.org	37	chr14	77769282	77769282	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggacagagtgaggcatccCgtgtctgaaaaacatgagct	13	8	1	4	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_013382	exon5	c.G552T	p.T184T	GCATCCCGTGTCT		51	3	0.06	52	0	0				28	0	0				A	77769282	C	A	77769282	2	1	48	1	0	0	0	0	0	0	0	1	12293	639	23	1		1	POMT2	14	77769282	Silent	SNP	C	TCGA-2G-AAH8-01A-11D-A42Y-10		77769282	29580258	58	3358											
AKAP13	11214	broad.mit.edu	37	chr15	86064728	86064728	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatgtagtgttttacttgGtatttttgggttccaccctc	9	7	0	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	AKAP13_ENST00000394518,NS,carcinoma,-2,2	AKAP13	NM_007200	exon3	c.G103T	p.V35L	TACTTGGTATTTT		391	4	0.01	289	0	0		394	2	5	0	0				T	86064728	G	T	86064728	3	4	48	1	0	0	0	0	1	0	0	0	446	1261	44	3	109	3	AKAP13	15	86064728	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10		86064728	16466664	59	3359											
ANPEP	290	broad.mit.edu	37	chr15	90328669	90328669	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcgtcttctccagggcttGctccagggcccgggtgcctg	13	14	2	0	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	ANPEP	NM_001150	exon21	c.C2815A	p.Q939K	GGGCTTGCTCCAG		206	6	0.03	162	0	0		124		82	0	0				T	90328669	G	T	90328669	3	4	48	1	0	0	0	0	1	0	0	0	704	1328	46	2	92	2	ANPEP	15	90328669	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	4263941	90328669	12202723	60	3360											
IFT140	9742	mdanderson.org	37	chr16	1561124	1561124	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttggccaagggaagccgccGccgcatctcctccaggaatc	12	15	1	0	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_014714	exon31	c.C4210A	p.R1404R	GCCGCCGCCGCAT		60	3	0.05	52	0	0				9	0	0				T	1561124	G	T	1561124	2	4	48	1	0	0	0	0	0	0	0	1	7599	1086	38	1		1	IFT140	16	1561124	Silent	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10		1561124	88793629	61	3361											
TSC2	7249	mdanderson.org	37	chr16	2124247	2124247	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcctcatccaccgctgtgCcagccagtgcgtcgtggcct	13	16	1	0	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_001114382	exon22	c.C2402T	p.A801V	GCTGTGCCAGCCA		47	3	0.06	67	0	0				54	0	0				T	2124247	C	T	2124247	3	4	48	1	0	0	0	0	1	0	0	0	16666	739	26	2	2484	2	TSC2	16	2124247	Missense_Mutation	SNP	C	TCGA-2G-AAH8-01A-11D-A42Y-10	563123	2124247	88230506	62	3362											
ACSM2B	348158	broad.mit.edu	37	chr16	20570613	20570613	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcaggcactcggggcagcaTcactgccacacgatccccac	9	18	2	0	rs374648082		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	ACSM2B,NS,carcinoma,0,1	ACSM2B	NM_182617	exon4	c.A334G	p.M112V	GCAGCATCACTGC		208	7	0.03	209	1	0.004784689		121	1	0	0					C	20570613	T	C	20570613	3	2	48	1	0	0	0	0	1	0	0	0	184	1435	50	4	1447	4	ACSM2B	16	20570613	Missense_Mutation	SNP	T	TCGA-2G-AAH8-01A-11D-A42Y-10	18446366	20570613	69784140	63	3363											
KIAA0895L	653319	mdanderson.org	37	chr16	67212358	67212358	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taccgcagccggccctccgcGttgtgccacggctggcgcgc	14	18	0	0	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_001040715	exon5	c.C897A	p.N299K	CTCCGCGTTGTGC		11	2	0.18	20	0	0				5	0	0				T	67212358	G	T	67212358	3	4	48	1	0	0	0	0	1	0	0	0	8239	1136	40	1	530	1	KIAA0895L	16	67212358	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	46641745	67212358	23142395	64	3364											
SMG6	23293	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	2200556	2200556	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcttgcgtaatggcttgCtgcgaatggcaagaccatcc	11	11	1	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_017575	exon4	c.G2132A	p.S711N	GGCTTGCTGCGAA		110	20	0.18	119	0	0				51	18	0.35				T	2200556	C	T	2200556	3	4	48	1	0	0	0	0	1	0	0	0	14850	797	28	2	2191	2	SMG6	17	2200556	Missense_Mutation	SNP	C	TCGA-2G-AAH8-01A-11D-A42Y-10		2200556	78994654	65	3365											
PITPNM3	83394	mdanderson.org	37	chr17	6371655	6371655	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgttcacgctctcatagcGcattacctagccaagagccg	9	13	2	1	rs150769456	bycluster;alternate_allele	TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	PITPNM3,NS,carcinoma,+1,1	PITPNM3	NM_031220	exon14	c.C1780A	p.R594S	CATAGCGCATTAC		54	3	0.06	61	0	0		1	1	4	0	0				T	6371655	G	T	6371655	3	4	48	1	0	0	0	0	1	0	0	0	11999	1087	38	1	1172	1	PITPNM3	17	6371655	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	4171099	6371655	74823555	66	3366											
PTPN2	5771	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr18	12830954	12830954	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttactcaccgattctttctcCacaatgcggttcagcatgac	6	13	4	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	PTPN2	NM_001207013	exon4	c.G348A	p.V116V	TTTCTCCACAATG		144	6	0.04	176	0	0		37		187	0	0				T	12830954	C	T	12830954	2	4	48	1	0	0	0	0	0	0	0	1	12834	581	21	3		3	PTPN2	18	12830954	Silent	SNP	C	TCGA-2G-AAH8-01A-11D-A42Y-10		12830954	65246294	67	3367											
SETBP1	26040	broad.mit.edu	37	chr18	42531523	42531523	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cagagctgccacccccatccGaagaacccaaaacagccatc	6	18	0	2	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	SETBP1	NM_015559	exon4	c.G2218T	p.E740X	CCATCCGAAGAAC		121	4	0.03	133	1	0.007518797		577		6	0	0				T	42531523	G	T	42531523	4	4	48	1	0	0	0	0	0	1	0	0	14182	1059	37	1	2421	1	SETBP1	18	42531523	Nonsense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	29700569	42531523	35545725	68	3368											
UHRF1	29128	broad.mit.edu	37	chr19	4960773	4960773	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaccagcctctgcagaccGtcctcaaccagctcttcccc	6	19	3	2	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	UHRF1	.	.	.	.	CAGACCGTCCTCA		574	6	0.01	395	0	0		56		4	0	0				A	4960773	G	A	4960773	1	1	48	0	1	0	0	0	0	0	0	0	17026	1145	40	1		1	UHRF1	19	4960773	RNA	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10		4960773	54168210	69	3369											
RFX1	5989	broad.mit.edu	37	chr19	14104595	14104595	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gggctgggcttgtggcggggCctgtggcggctgggatggtg	24	7	0	0	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	RFX1	NM_002918	exon2	c.G61C	p.A21P	GCGGGGCCTGTGG		97	28	0.29	62	16	0.2580645161		63		3	0	0				G	14104595	C	G	14104595	3	3	48	1	0	0	0	0	1	0	0	0	13313	739	26	5	2958	5	RFX1	19	14104595	Missense_Mutation	SNP	C	TCGA-2G-AAH8-01A-11D-A42Y-10	9143822	14104595	45024388	70	3370											
U2AF1L4	199746	mdanderson.org	37	chr19	36233572	36233572	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctttgaggagaggtcctgcCaggaacatctgtccctgttg	13	10	1	2	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_144987	exon6	c.G536A	p.W179X	TCCTGCCAGGAAC		53	4	0.08	41	0	0				52	0	0				T	36233572	C	T	36233572	4	4	48	1	0	0	0	0	0	1	0	0	16882	595	21	3	76	3	U2AF1L4	19	36233572	Nonsense_Mutation	SNP	C	TCGA-2G-AAH8-01A-11D-A42Y-10	22128977	36233572	22895411	71	3371											
ZNF526	116115	mdanderson.org	37	chr19	42730029	42730029	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccacgtgcgcaaccacctgCggacacacacgggtgagagg	13	14	0	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_133444	exon3	c.C1474T	p.R492W	CACCTGCGGACAC		89	4	0.04	82	0	0				74	1	0.01				T	42730029	C	T	42730029	3	4	48	1	0	0	0	0	1	0	0	0	18023	759	27	1	1476	1	ZNF526	19	42730029	Missense_Mutation	SNP	C	TCGA-2G-AAH8-01A-11D-A42Y-10	6496457	42730029	16398954	72	3372											
SPHK2	56848	mdanderson.org	37	chr19	49129574	49129574	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcccagcgctgggccactGccctcacctgtctgctccga	11	18	2	0	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_020126	exon3	c.G466T	p.A156S	GCCACTGCCCTCA		13	2	0.15	9	0	0				14	0	0				T	49129574	G	T	49129574	3	4	48	1	0	0	0	0	1	0	0	0	15102	1319	46	2	472	2	SPHK2	19	49129574	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	6399545	49129574	9999409	73	3373											
NCOA6	23054	broad.mit.edu	37	chr20	33337630	33337630	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgggctgggccctggtgGccgcaggacctgtccctgaa	17	12	0	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	NCOA6	NM_014071	exon9	c.C2368A	p.P790T	CTGGTGGCCGCAG		114	6	0.05	104	1	0.0096153846		219		43	0	0				T	33337630	G	T	33337630	3	4	48	1	0	0	0	0	1	0	0	0	10279	1203	42	2	3851	2	NCOA6	20	33337630	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10		33337630	29687890	74	3374											
MN1	4330	mdanderson.org	37	chr22	28194155	28194155	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccgaggtgcgctggctggGctggaaatcaggctgcggcg	20	10	1	0	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_002430	exon1	c.C2377A	p.P793T	GGCTGGGCTGGAA		26	3	0.12	27	0	0				1	0	0				T	28194155	G	T	28194155	3	4	48	1	0	0	0	0	1	0	0	0	9721	1203	42	2	1593	2	MN1	22	28194155	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10		28194155	23110411	75	3375											
TTC38	55020	mdanderson.org	37	chr22	46685356	46685356	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gacgtggggctgcccctgtgCcaggccctggtggaggctga	18	12	0	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_017931	exon12	c.C1140A	p.C380X	CCTGTGCCAGGCC		31	3	0.1	29	0	0				11	0	0				A	46685356	C	A	46685356	4	1	48	1	0	0	0	0	0	1	0	0	16767	747	26	2	1186	2	TTC38	22	46685356	Nonsense_Mutation	SNP	C	TCGA-2G-AAH8-01A-11D-A42Y-10	18491201	46685356	4619210	76	3376											
CELSR1	9620	mdanderson.org	37	chr22	46931248	46931248	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccccagaaaggtggaggccGtgtccaccaggcgatagtgc	14	13	0	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_014246	exon1	c.C1820T	p.T607M	GAGGCCGTGTCCA		35	3	0.09	41	0	0				8	0	0				A	46931248	G	A	46931248	3	1	48	1	0	0	0	0	1	0	0	0	3243	1145	40	1	7364	1	CELSR1	22	46931248	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	245892	46931248	4373318	77	3377											
KLHDC7B	113730	mdanderson.org	37	chr22	50986623	50986623	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttagaagccaccccttccccAggcaagacaggccccaaggg	10	16	0	2	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_138433	exon1	c.A28T	p.R10W	TTCCCCAGGCAAG		35	3	0.09	52	0	0				1	0	0				T	50986623	A	T	50986623	3	4	48	1	0	0	0	0	1	0	0	0	8403	179	7	5	30	5	KLHDC7B	22	50986623	Missense_Mutation	SNP	A	TCGA-2G-AAH8-01A-11D-A42Y-10	4055375	50986623	317943	78	3378											
KDM5C	8242	mdanderson.org	37	chrX	53222378	53222378	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cctcctcagcctctggccctGagctccgtaccctctttggc	8	19	3	1	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_004187	exon26	c.C4454A	p.S1485X	GGCCCTGAGCTCC		61	4	0.07	29	0	0				246	1	0				T	53222378	G	T	53222378	4	4	48	1	0	0	0	0	0	1	0	0	8177	1294	45	3	330	3	KDM5C	23	53222378	Nonsense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10		53222378	102048182	79	3379											
HMGB3	3149	mdanderson.org	37	chrX	150156378	150156378	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggaggaggaggaggaGgatgaataaagaaactgttt	18	1	0	2	novel		TCGA-2G-AAH8-01A-11D-A42Y-10	TCGA-2G-AAH8-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf4e939a-ec2e-42e2-a404-56b7e3c355ea	933fc86a-905f-44dc-897e-20ba42f39b6a	.	.	NM_005342	exon5	c.G594T	p.E198D	GGAGGAGGATGAA		20	2	0.1	13	0	0				88	0	0				T	150156378	G	T	150156378	3	4	48	1	0	0	0	0	1	0	0	0	7267	991	35	3	608	3	HMGB3	23	150156378	Missense_Mutation	SNP	G	TCGA-2G-AAH8-01A-11D-A42Y-10	96934000	150156378	5114182	80	3380											
NBL1	4681	broad.mit.edu	37	chr1	19981664	19981664	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acccagatcgtgggccacagCggctgtgaggccaagtccat	13	13	0	2	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	NBL1,NS,carcinoma,0,1	NBL1	NM_182744	exon2	c.C246T	p.S82S	CCACAGCGGCTGT		98	3	0.03	79	0	0		21	1	216	0	0				T	19981664	C	T	19981664	2	4	49	1	0	0	0	0	0	0	0	1	10237	767	27	1		1	NBL1	1	19981664	Silent	SNP	C	TCGA-2G-AAHA-01A-11D-A42Y-10		19981664	229268957	1	3381											
WNT4	54361	mdanderson.org	37	chr1	22446566	22446566	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcggcacgtgtgcaactccaCgagccgctggcactgccggc	13	16	0	0	rs201176310	alternate_allele	TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	WNT4,caecum,carcinoma,+1,1	WNT4	NM_030761	exon5	c.G1033A	p.V345M	ACTCCACGAGCCG		44	4	0.09	43	0	0		1	1	0	0					T	22446566	C	T	22446566	3	4	49	1	0	0	0	0	1	0	0	0	17449	536	19	1	26	1	WNT4	1	22446566	Missense_Mutation	SNP	C	TCGA-2G-AAHA-01A-11D-A42Y-10	2464902	22446566	226804055	2	3382											
LEPRE1	64175	mdanderson.org	37	chr1	43213951	43213951	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	aggatgcagttgtccacgtgGactggatgactatcatcctt	11	9	1	1	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_022356	exon12	c.C1758A	p.V586V	CACGTGGACTGGA		41	3	0.07	50	0	0				57	0	0				T	43213951	G	T	43213951	2	4	49	1	0	0	0	0	0	0	0	1	8767	1161	41	3		3	LEPRE1	1	43213951	Silent	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	20767385	43213951	206036670	3	3383											
FAF1	11124	broad.mit.edu	37	chr1	50907170	50907170	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	acaactttacctccaataatGatttatttgggtccagttga	6	8	0	2	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	FAF1	NM_007051	exon19	c.C1895A	p.S632X	AATAATGATTTAT		131	4	0.03	121	1	0.0082644628		64		152	0	0				T	50907170	G	T	50907170	4	4	49	1	0	0	0	0	0	1	0	0	5400	1294	45	3	61	3	FAF1	1	50907170	Nonsense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	7693219	50907170	198343451	4	3384											
NEXN	91624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	78407806	78407808	+	In_Frame_Del	DEL	AGA	AGA	-													gaacaaatggctaaggcaagAgaagaagaagaacaaagaag					novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	AGA	AGA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	NEXN	NM_144573	exon12	c.1571_1573del	p.524_525del	GGCAAGAGAAGAA		158	26	0.16	164	0	0		77		28	0	0				-	78407808	AGA	-	78407806	7	5	49	1	0	1	0	1	0	0	0	0	10401	301	11	0	1614	0	NEXN	1	78407806	In_Frame_Del	DEL	AGA	TCGA-2G-AAHA-01A-11D-A42Y-10	27500636	78407806	170842815	5	3385											
SEC22B	9554	broad.mit.edu	37	chr1	145109975	145109976	+	RNA	INS	-	-	C													cacatgtgacaggaactttgINSctaaagatctacttgattgg					rs11458983	bycluster	TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	.	.	.	.	AACTTTGCTAAAG		8	3	0.38	5	0	0				0	0					C	145109976	-	C	145109975	6	5	49	0	1	1	1	0	0	0	0	0	14042	1334	46	0		0	SEC22B	1	145109975	RNA	INS	-	TCGA-2G-AAHA-01A-11D-A42Y-10	66702169	145109975	104140646	6	3386											
APH1A	51107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	150238547	150238547	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctcagtcctcgggtgggaTgcgcagggcagaatacacca	13	13	1	1	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_001077628	exon7	c.A781G	p.I261V	GTGGGATGCGCAG		411	124	0.3	323	0	0				198	47	0.24				C	150238547	T	C	150238547	3	2	49	1	0	0	0	0	1	0	0	0	767	1464	51	4	20	4	APH1A	1	150238547	Missense_Mutation	SNP	T	TCGA-2G-AAHA-01A-11D-A42Y-10	5128572	150238547	99012074	7	3387											
SLAMF6	114836	broad.mit.edu	37	chr1	160465888	160465888	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taactggacagctttgcagaGgtctttgtggatatctgggc	13	7	2	1	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	SLAMF6,NS,carcinoma,0,1	SLAMF6	NM_052931	exon2	c.C345A	p.T115T	TGCAGAGGTCTTT		315	5	0.02	262	0	0		46	1	22	0	0				T	160465888	G	T	160465888	2	4	49	1	0	0	0	0	0	0	0	1	14422	987	35	3		3	SLAMF6	1	160465888	Silent	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	10227341	160465888	88784733	8	3388											
INO80B	83444	mdanderson.org	37	chr2	74684838	74684838	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatccccctcaggcccgccGccgcgctgctctgtccccgg	10	23	2	0	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_031288	exon5	c.G918A	p.P306P	CCCGCCGCCGCGC		32	3	0.09	27	0	0				29	0	0				A	74684838	G	A	74684838	2	1	49	1	0	0	0	0	0	0	0	1	7790	1074	38	1		1	INO80B	2	74684838	Silent	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10		74684838	168514535	9	3389											
SFTPB	6439	mdanderson.org	37	chr2	85890594	85890594	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactcagagtctcgcggcaGccattctcctgtcggcgacc	11	16	3	1	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_198843	exon9	c.C913A	p.L305M	GCGGCAGCCATTC		55	3	0.05	73	0	0				2	0	0				T	85890594	G	T	85890594	3	4	49	1	0	0	0	0	1	0	0	0	14244	962	34	2	280	2	SFTPB	2	85890594	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	11205756	85890594	157308779	10	3390											
ANKRD36B	57730	mdanderson.org	37	chr2	98165905	98165905	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctagatttttctccatccTttttttctctggctatattc	3	11	2	1	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_025190	exon20	c.A1454G	p.K485R	CCATCCTTTTTTT		27	2	0.07	14	0	0				3	0	0				C	98165905	T	C	98165905	3	2	49	1	0	0	0	0	1	0	0	0	660	1609	56	4	2703	4	ANKRD36B	2	98165905	Missense_Mutation	SNP	T	TCGA-2G-AAHA-01A-11D-A42Y-10	12275311	98165905	145033468	11	3391											
INPP4A	3631	broad.mit.edu	37	chr2	99185080	99185080	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcaacgtggagagtttgGtgcggttaaattcctacttt	10	7	2	1	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	INPP4A	NM_001134224	exon23	c.G2482T	p.V828L	AGTTTGGTGCGGT		427	6	0.01	304	0	0		205		42	0	0				T	99185080	G	T	99185080	3	4	49	1	0	0	0	0	1	0	0	0	7795	1261	44	3	2564	3	INPP4A	2	99185080	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	1019175	99185080	144014293	12	3392											
PPIG	9360	broad.mit.edu	37	chr2	170493804	170493804	+	Frame_Shift_Del	DEL	A	A	-													tagctcaaataacagcagggAaaaaaaggctgatagagatc					novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	PPIG	NM_004792	exon14	c.2036delA	p.E679fs	GCAGGGAAAAAAA		186	7	0.04	158	0	0		100		178	0	0				-	170493804	A	-	170493804	7	5	49	1	0	1	0	1	0	0	0	0	12372	246	9	0	2082	0	PPIG	2	170493804	Frame_Shift_Del	DEL	A	TCGA-2G-AAHA-01A-11D-A42Y-10	71308724	170493804	72705569	13	3393											
ANO7	50636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	242142853	242142853	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaagtggaacaagtaccagCccctggaccacgtgcgcagg	13	13	0	0	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	ANO7,NS,carcinoma,-1,1	ANO7	NM_001001891	exon9	c.C991T	p.P331S	TACCAGCCCCTGG		498	77	0.15	375	0	0		-1	1	1	0	0				T	242142853	C	T	242142853	3	4	49	1	0	0	0	0	1	0	0	0	696	739	26	2	1097	2	ANO7	2	242142853	Missense_Mutation	SNP	C	TCGA-2G-AAHA-01A-11D-A42Y-10	71649049	242142853	1056520	14	3394											
DHX30	22907	broad.mit.edu	37	chr3	47891431	47891431	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agggtgactcgcgtaccgtgCggctgctgaaggagctgcgg	18	10	0	2	rs144869940		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	DHX30	NM_138615	exon22	c.C3406T	p.R1136W	ACCGTGCGGCTGC		109	4	0.04	104	0	0		101		112	0	0				T	47891431	C	T	47891431	3	4	49	1	0	0	0	0	1	0	0	0	4532	759	27	1	3495	1	DHX30	3	47891431	Missense_Mutation	SNP	C	TCGA-2G-AAHA-01A-11D-A42Y-10		47891431	150130999	15	3395											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	55599320	55599320	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgattttggtctagccagaGacatcaagaatgattctaat	9	6	3	4	rs121913506	bycluster	TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	KIT,colon,carcinoma,0,932	KIT	NM_000222	exon17	c.G2446C	p.D816H	GCCAGAGACATCA		98	24	0.24	96	0	0		0	932	181	121	0.67				C	55599320	G	C	55599320	3	2	49	1	0	0	0	0	1	0	0	0	8371	942	33	5	2512	5	KIT	4	55599320	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10		55599320	135554956	16	3396											
AGA	175	broad.mit.edu	37	chr4	178355608	178355608	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagtatcgtcagcatagGctccagctccaggtattggt	11	11	1	0	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	AGA	NM_000027	exon7	c.C734A	p.A245D	GCATAGGCTCCAG		260	5	0.02	243	0	0		39		80	1	0.01				T	178355608	G	T	178355608	3	4	49	1	0	0	0	0	1	0	0	0	364	1203	42	2	318	2	AGA	4	178355608	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	122756288	178355608	12798668	17	3397											
PIK3R1	5295	broad.mit.edu	37	chr5	67588169	67588169	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttacaagatgctgaatgGtactggggagatatctcgag	12	7	1	3	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	PIK3R1,colon,carcinoma,+2,1	PIK3R1	NM_181523	exon8	c.G999T	p.W333C	TGAATGGTACTGG		108	4	0.04	112	0	0		869	1	35	0	0				T	67588169	G	T	67588169	3	4	49	1	0	0	0	0	1	0	0	0	11965	1270	44	3	1155	3	PIK3R1	5	67588169	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10		67588169	113327091	18	3398											
FBN2	2201	mdanderson.org	37	chr5	127800526	127800526	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccgtccaatggtggcacaGcacagagtcttcgtgcagac	12	13	1	2	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_001999	exon6	c.C717T	p.C239C	GGCACAGCACAGA		93	4	0.04	99	0	0				0	0					A	127800526	G	A	127800526	2	1	49	1	0	0	0	0	0	0	0	1	5735	963	34	2		2	FBN2	5	127800526	Silent	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	60212357	127800526	53114734	19	3399											
SPRY4	81848	mdanderson.org	37	chr5	141694655	141694655	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagtcaagggggcgctctGtgggatcgggggctccatgg	21	8	2	0	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_030964	exon3	c.C88A	p.Q30K	CGCTCTGTGGGAT		39	3	0.08	39	0	0				137	0	0				T	141694655	G	T	141694655	3	4	49	1	0	0	0	0	1	0	0	0	15163	1386	48	3	884	3	SPRY4	5	141694655	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	13894129	141694655	39220605	20	3400											
FAM8A1	51439	hgsc.bcm.edu	37	chr6	17602826	17602826	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttttaatttacaggcagaGaatatgttattccatccttg	6	6	0	1	rs74444948	bycluster;byfrequency	TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	FAM8A1,NS,carcinoma,-1,2	FAM8A1	NM_016255	exon2	c.G718T	p.E240X	GGCAGAGAATATG		68	8	0.12	49	1	0.0204081633	0.008	-1	2	10	0	0				T	17602826	G	T	17602826	4	4	49	1	0	0	0	0	0	1	0	0	5679	943	33	3	724	3	FAM8A1	6	17602826	Nonsense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10		17602826	153512241	21	3401											
BCKDHB	594	broad.mit.edu	37	chr6	80838937	80838937	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gatgcactgttggcttgcgaGacaaatatggtaagtaaata	11	5	0	1	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	BCKDHB	NM_000056	exon3	c.G334T	p.D112Y	TTGCGAGACAAAT		414	6	0.01	275	0	0		36		19	0	0				T	80838937	G	T	80838937	3	4	49	1	0	0	0	0	1	0	0	0	1358	942	33	3	344	3	BCKDHB	6	80838937	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	63236111	80838937	90276130	22	3402											
DENND2A	27147	broad.mit.edu	37	chr7	140221669	140221669	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcacctttggcatcctgcCggcgcagctcccgctcctgg	10	19	1	0	rs202110826	by1000genomes	TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	DENND2A	NM_015689	exon16	c.G2897A	p.R966Q	TCCTGCCGGCGCA		208	5	0.02	122	0	0		132		30	0	0				T	140221669	C	T	140221669	3	4	49	1	0	0	0	0	1	0	0	0	4457	652	23	1	144	1	DENND2A	7	140221669	Missense_Mutation	SNP	C	TCGA-2G-AAHA-01A-11D-A42Y-10		140221669	18916994	23	3403											
TRPV5	56302	broad.mit.edu	37	chr7	142605705	142605705	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aatggtagacctcctctccaTccccctcactaaggttcagt	6	15	3	1	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	TRPV5	NM_019841	exon15	c.A2165G	p.D722G	TCTCCATCCCCCT		161	6	0.04	132	0	0		164		0	0					C	142605705	T	C	142605705	3	2	49	1	0	0	0	0	1	0	0	0	16659	1435	50	4	28	4	TRPV5	7	142605705	Missense_Mutation	SNP	T	TCGA-2G-AAHA-01A-11D-A42Y-10	2384036	142605705	16532958	24	3404											
CLDN23	137075	broad.mit.edu;mdanderson.org	37	chr8	8560263	8560263	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctggcagggctctcgggcGtcgtgctcttcgtcgctggc	16	13	2	0	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	CLDN23	NM_194284	exon1	c.G355T	p.V119F	TCGGGCGTCGTGC		53	3	0.06	48	0	0		5		1	0	0				T	8560263	G	T	8560263	3	4	49	1	0	0	0	0	1	0	0	0	3507	1145	40	1	357	1	CLDN23	8	8560263	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10		8560263	137803759	25	3405											
PPP2R2A	5520	broad.mit.edu	37	chr8	26217684	26217684	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttctttattttcttcccaGataaaacaataaaattatgg	3	6	2	1	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	PPP2R2A	NM_002717	exon5	c.347-1G>T	.	TTCCCAGATAAAA		54	3	0.06	53	0	0		44		1	0	0				T	26217684	G	T	26217684	5	4	49	1	0	0	0	0	0	0	1	0	12432	956	33	3	405	3	PPP2R2A	8	26217684	Splice_Site	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	17657421	26217684	120146338	26	3406											
ADAM2	2515	broad.mit.edu	37	chr8	39694657	39694657	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttagtgattcattacctGcgattcaattccttccttta	5	10	2	1	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	ADAM2	NM_001464	exon2	c.C130A	p.Q44K	TTACCTGCGATTC		227	5	0.02	151	0	0		124		0	0					T	39694657	G	T	39694657	3	4	49	1	0	0	0	0	1	0	0	0	240	1328	46	2	2153	2	ADAM2	8	39694657	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	13476973	39694657	106669365	27	3407											
PPAPDC2	403313	mdanderson.org	37	chr9	4662565	4662565	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctccgtgcatcggagagcCcagttcaccgccgcggctcc	13	17	1	1	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_203453	exon1	c.C190A	p.P64T	GAGAGCCCAGTTC		9	1	0.11	11	0	0				1	0	0				A	4662565	C	A	4662565	3	1	49	1	0	0	0	0	1	0	0	0	12339	623	22	3	192	3	PPAPDC2	9	4662565	Missense_Mutation	SNP	C	TCGA-2G-AAHA-01A-11D-A42Y-10		4662565	136550866	28	3408											
RUSC2	9853	broad.mit.edu	37	chr9	35556093	35556093	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctatctttgagttccctgGctccctcagtgctgccagcc	8	17	2	1	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	RUSC2	NM_014806	exon4	c.G2801A	p.G934D	TCCCTGGCTCCCT		190	5	0.03	153	0	0		88		65	0	0				A	35556093	G	A	35556093	3	1	49	1	0	0	0	0	1	0	0	0	13802	1203	42	2	2811	2	RUSC2	9	35556093	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	30893528	35556093	105657338	29	3409											
ZNF618	114991	broad.mit.edu	37	chr9	116811230	116811230	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaatgcctgcctaggcatcGgtgtcacctgccactcccag	10	16	1	0	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	ZNF618	NM_133374	exon14	c.G1369T	p.G457C	GGCATCGGTGTCA		81	4	0.05	63	0	0		184		14	0	0				T	116811230	G	T	116811230	3	4	49	1	0	0	0	0	1	0	0	0	18098	1116	39	1	1423	1	ZNF618	9	116811230	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	81255137	116811230	24402201	30	3410											
RAPGEF1	2889	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	134497251	134497253	+	In_Frame_Del	DEL	AGG	AGG	-													cacggagtccaccccactgaAggagtcgctgaagccgtata					novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	AGG	AGG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	RAPGEF1	NM_198679	exon11	c.1839_1841del	p.613_614del	CACTGAAGGAGTC		144	23	0.16	143	0	0		126		93	0	0				-	134497253	AGG	-	134497251	7	5	49	1	0	1	0	1	0	0	0	0	13094	72	3	0	1503	0	RAPGEF1	9	134497251	In_Frame_Del	DEL	AGG	TCGA-2G-AAHA-01A-11D-A42Y-10	17686021	134497251	6716180	31	3411											
ADAMTS13	11093	mdanderson.org	37	chr9	136297802	136297802	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctggatgggacagaatgtGgcgtggagaaggtcagagcc	17	7	1	3	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_139025	exon9	c.G1081T	p.G361C	GAATGTGGCGTGG		27	2	0.07	27	0	0				0	0					T	136297802	G	T	136297802	3	4	49	1	0	0	0	0	1	0	0	0	257	1348	47	3	1115	3	ADAMTS13	9	136297802	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	1800551	136297802	4915629	32	3412											
UBAC1	10422	mdanderson.org	37	chr9	138852939	138852939	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcctcctccagccactcggCgccgtcggacgcgcagatgt	13	17	0	1	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_016172	exon1	c.G70A	p.A24T	ACTCGGCGCCGTC		34	3	0.09	34	0	0				47	0	0				T	138852939	C	T	138852939	3	4	49	1	0	0	0	0	1	0	0	0	16894	768	27	1	1187	1	UBAC1	9	138852939	Missense_Mutation	SNP	C	TCGA-2G-AAHA-01A-11D-A42Y-10	2555137	138852939	2360492	33	3413											
BNIP3	664	mdanderson.org	37	chr10	133784438	133784438	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gtttttcttcaagatgctttCaacttctttccttctttcaa	3	10	6	1	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_004052	exon4	c.G319T	p.E107X	TGCTTTCAACTTC		50	3	0.06	65	0	0				438	0	0				A	133784438	C	A	133784438	4	1	49	1	0	0	0	0	0	1	0	0	1477	835	29	3	277	3	BNIP3	10	133784438	Nonsense_Mutation	SNP	C	TCGA-2G-AAHA-01A-11D-A42Y-10		133784438	1750309	34	3414											
LTBP3	4054	broad.mit.edu	37	chr11	65325326	65325328	+	In_Frame_Del	DEL	CAG	CAG	-													tcgaccctgccgcccaggccCagcagcagcagcagcagcag					novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	CAG	CAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	LTBP3	NM_001130144	exon1	c.103_105del	p.35_35del	CAGGCCCAGCAGC		10	4	0.4	7	0	0		55		0	0					-	65325328	CAG	-	65325326	7	5	49	1	0	1	0	1	0	0	0	0	9119	581	21	0	3918	0	LTBP3	11	65325326	In_Frame_Del	DEL	CAG	TCGA-2G-AAHA-01A-11D-A42Y-10		65325326	69681190	35	3415											
TMEM151A	256472	mdanderson.org	37	chr11	66062288	66062288	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgacagccgcacggcccgcGgcgagtttgactactcggcg	14	15	0	2	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_153266	exon2	c.G571A	p.G191S	GCCCGCGGCGAGT		25	2	0.08	27	0	0				0	0					A	66062288	G	A	66062288	3	1	49	1	0	0	0	0	1	0	0	0	16129	1116	39	1	577	1	TMEM151A	11	66062288	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	736962	66062288	68944228	36	3416											
POLD3	10714	broad.mit.edu;mdanderson.org	37	chr11	74351712	74351712	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgccatgactgtgaaaaaAgaacccagagaggaacgaaa	10	9	0	4	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	POLD3	NM_006591	exon12	c.A1302G	p.K434K	GAAAAAAGAACCC		101	4	0.04	97	0	0		87		40	0	0				G	74351712	A	G	74351712	2	3	49	1	0	0	0	0	0	0	0	1	12239	69	3	4		4	POLD3	11	74351712	Silent	SNP	A	TCGA-2G-AAHA-01A-11D-A42Y-10	8289424	74351712	60654804	37	3417											
APOA4	337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	116692311	116692311	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcgtagggggtcagctggcGccgcagctgctcggcctgcg	18	13	1	0	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_000482	exon3	c.C463T	p.R155C	GCTGGCGCCGCAG		43	11	0.26	38	0	0				0	0					A	116692311	G	A	116692311	3	1	49	1	0	0	0	0	1	0	0	0	780	1087	38	1	731	1	APOA4	11	116692311	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	42340599	116692311	18314205	38	3418											
IFFO1	25900	bcgsc.ca;mdanderson.org	37	chr12	6650731	6650731	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctccatctgcacgtccagGccgcgcttcatgctgcacat	9	16	3	0	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	IFFO1	NM_001193457	exon9	c.C1557A	p.G519G	GTCCAGGCCGCGC		103	5	0.05	84	0	0		55		40	0	0				T	6650731	G	T	6650731	2	4	49	1	0	0	0	0	0	0	0	1	7553	1190	42	2		2	IFFO1	12	6650731	Silent	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10		6650731	127201164	39	3419											
BCL2L14	79370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	12232368	12232368	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aagagcacccctgctctcttCtcaccaaagctgctgagaac	7	15	2	2	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_138723	exon2	c.C129T	p.F43F	TCTCTTCTCACCA		156	29	0.19	122	0	0				4	0	0				T	12232368	C	T	12232368	2	4	49	1	0	0	0	0	0	0	0	1	1370	912	32	3		3	BCL2L14	12	12232368	Silent	SNP	C	TCGA-2G-AAHA-01A-11D-A42Y-10	5581637	12232368	121619527	40	3420											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529	bycluster	TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	KRAS_ENST00000256078,NS,adenocarcinoma,0,25136	KRAS_ENST00000256078	NM_004985	exon2	c.G35C	p.G12A	ACGCCACCAGCTC		285	48	0.17	197	0	0		0	25136	16	3	0.19				G	25398284	C	G	25398284	3	3	49	1	0	0	0	0	1	0	0	0	8480	507	18	5	671	5	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-2G-AAHA-01A-11D-A42Y-10	13165916	25398284	108453611	41	3421											
TPTE2	93492	bcgsc.ca	37	chr13	20056686	20056686	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttggaaagtcgttctaacaTactttagccaccaaaaaaaa	5	9	1	0	rs201542496		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	TPTE2	NM_199254	exon5	c.A121G	p.M41V	CTAACATACTTTA		586	13	0.02	572	3	0.0052447552		225		0	0					C	20056686	T	C	20056686	3	2	49	1	0	0	0	0	1	0	0	0	16491	1420	49	4	1515	4	TPTE2	13	20056686	Missense_Mutation	SNP	T	TCGA-2G-AAHA-01A-11D-A42Y-10		20056686	95113192	42	3422											
TPP2	7174	mdanderson.org	37	chr13	103290652	103290652	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagagttccgatcactgcaGttatagcagcaaagtaagta	9	8	2	1	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_003291	exon15	c.G1900T	p.V634F	ACTGCAGTTATAG		33	3	0.09	41	0	0				49	0	0				T	103290652	G	T	103290652	3	4	49	1	0	0	0	0	1	0	0	0	16472	1029	36	3	1958	3	TPP2	13	103290652	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	83233966	103290652	11879226	43	3423											
CLEC14A	161198	mdanderson.org	37	chr14	38725067	38725067	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgccccacctcgcaggatgCaggcctcctcggccgcctgc	12	20	0	0	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_175060	exon1	c.G161A	p.C54Y	AGGATGCAGGCCT		23	2	0.09	16	0	0				1	0	0				T	38725067	C	T	38725067	3	4	49	1	0	0	0	0	1	0	0	0	3522	710	25	2	1315	2	CLEC14A	14	38725067	Missense_Mutation	SNP	C	TCGA-2G-AAHA-01A-11D-A42Y-10		38725067	68624473	44	3424											
PNN	5411	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr14	39651005	39651005	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcagagagtagtcgatcaGgcaaaagatcttcaagaagt	10	6	4	3	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_002687	exon9	c.G2092T	p.G698C	CGATCAGGCAAAA		58	4	0.07	39	0	0				370	0	0				T	39651005	G	T	39651005	3	4	49	1	0	0	0	0	1	0	0	0	12207	1000	35	3	2126	3	PNN	14	39651005	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	925938	39651005	67698535	45	3425											
MTHFD1	4522	broad.mit.edu	37	chr14	64914955	64914955	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aacctggagctggttgaaaaAggcttcagtaacttgaagaa	11	6	1	3	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	MTHFD1	NM_005956	exon23	c.A2199G	p.K733K	TGAAAAAGGCTTC		116	4	0.03	92	0	0		61		251	0	0				G	64914955	A	G	64914955	2	3	49	1	0	0	0	0	0	0	0	1	9974	69	3	4		4	MTHFD1	14	64914955	Silent	SNP	A	TCGA-2G-AAHA-01A-11D-A42Y-10	25263950	64914955	42434585	46	3426											
LOXL1	4016	mdanderson.org	37	chr15	74219685	74219685	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcgcccttcgtcagccaGtacgagaactacgaccccgc	10	17	1	1	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_005576	exon1	c.G561T	p.Q187H	CAGCCAGTACGAG		45	3	0.07	35	0	0				7	0	0				T	74219685	G	T	74219685	3	4	49	1	0	0	0	0	1	0	0	0	8943	1020	36	3	563	3	LOXL1	15	74219685	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10		74219685	28311707	47	3427											
SCAMP2	10066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	75143705	75143705	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gggactcacacatccacagaTagtagagcatcttgcatatc	8	11	2	2	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_005697	exon5	c.A461C	p.Y154S	CACAGATAGTAGA		73	7	0.1	49	0	0				192	35	0.18				G	75143705	T	G	75143705	3	3	49	1	0	0	0	0	1	0	0	0	13923	1406	49	4	548	4	SCAMP2	15	75143705	Missense_Mutation	SNP	T	TCGA-2G-AAHA-01A-11D-A42Y-10	924020	75143705	27387687	48	3428											
NETO2	81831	mdanderson.org	37	chr16	47163244	47163244	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caaatgccacactgggttgcAggaatatgcttgattccaat	9	9	0	1	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_001201477	exon3	c.T123C	p.P41P	GGTTGCAGGAATA		47	3	0.06	42	0	0				58	0	0				G	47163244	A	G	47163244	2	3	49	1	0	0	0	0	0	0	0	1	10386	175	7	4		4	NETO2	16	47163244	Silent	SNP	A	TCGA-2G-AAHA-01A-11D-A42Y-10		47163244	43191509	49	3429											
PHKB	5257	mdanderson.org	37	chr16	47531334	47531334	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttatgaacctcttaaaaGcattaatcttccaagacctg	5	9	2	2	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_000293	exon2	c.G101T	p.S34I	TTAAAAGCATTAA		50	3	0.06	48	0	0				35	0	0				T	47531334	G	T	47531334	3	4	49	1	0	0	0	0	1	0	0	0	11892	971	34	2	166	2	PHKB	16	47531334	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	368090	47531334	42823419	50	3430											
HSF4	3299	mdanderson.org	37	chr16	67200242	67200242	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagaacgagatcttgtggCgggaggtggtgacacttcgg	18	7	1	3	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_001538	exon7	c.C505T	p.R169W	TTGTGGCGGGAGG		104	5	0.05	89	0	0				4	0	0				T	67200242	C	T	67200242	3	4	49	1	0	0	0	0	1	0	0	0	7438	759	27	1	523	1	HSF4	16	67200242	Missense_Mutation	SNP	C	TCGA-2G-AAHA-01A-11D-A42Y-10	19668908	67200242	23154511	51	3431											
ANKRD11	29123	broad.mit.edu	37	chr16	89351844	89351844	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgtttcttttctgtagtccTttttcaataggtgcttgtcg	8	8	3	0	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	ANKRD11	NM_001256183	exon9	c.A1106G	p.K369R	TAGTCCTTTTTCA		172	4	0.02	147	0	0		195		79	0	0				C	89351844	T	C	89351844	3	2	49	1	0	0	0	0	1	0	0	0	635	1609	56	4	6905	4	ANKRD11	16	89351844	Missense_Mutation	SNP	T	TCGA-2G-AAHA-01A-11D-A42Y-10	22151602	89351844	1002909	52	3432											
PHF23	79142	mdanderson.org	37	chr17	7140047	7140047	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcggccgcactctctcctcGcaatggagagctggagccag	13	14	1	1	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_024297	exon4	c.C199A	p.R67R	CTCCTCGCAATGG		52	3	0.06	60	0	0				163	0	0				T	7140047	G	T	7140047	2	4	49	1	0	0	0	0	0	0	0	1	11882	1095	38	1		1	PHF23	17	7140047	Silent	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10		7140047	74055163	53	3433											
MYOCD	93649	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	12656145	12656145	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cttctgagctggatgggctgGactccgagaaggacaagatg	15	8	1	3	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	MYOCD	NM_001146312	exon10	c.G1540A	p.D514N	GGGCTGGACTCCG		129	23	0.18	137	1	0.0072992701		291		0	0					A	12656145	G	A	12656145	3	1	49	1	0	0	0	0	1	0	0	0	10134	1174	41	3	1578	3	MYOCD	17	12656145	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	5516098	12656145	68539065	54	3434											
MYO1D	4642	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	31094740	31094740	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcatggcatcagcaacaaCtctgaattcggcagcatcat	7	11	4	1	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	MYO1D	NM_015194	exon7	c.G745A	p.V249I	CAACAACTCTGAA		49	5	0.1	56	0	0		93		16	7	0.44				T	31094740	C	T	31094740	3	4	49	1	0	0	0	0	1	0	0	0	10118	565	20	3	2339	3	MYO1D	17	31094740	Missense_Mutation	SNP	C	TCGA-2G-AAHA-01A-11D-A42Y-10	18438595	31094740	50100470	55	3435											
KIF19	124602	mdanderson.org	37	chr17	72350311	72350311	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cccgctgcagagaggaaggaGatcctgactggcaccaagtg	14	11	0	3	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_153209	exon18	c.G2319T	p.E773D	GAAGGAGATCCTG		49	3	0.06	29	0	0				0	0					T	72350311	G	T	72350311	3	4	49	1	0	0	0	0	1	0	0	0	8323	933	33	3	2389	3	KIF19	17	72350311	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	41255571	72350311	8844899	56	3436											
FBF1	85302	mdanderson.org	37	chr17	73909787	73909787	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ttctggagccactcaccactCtggctggaggctgcagggcc	13	14	3	0	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_001080542	exon27	c.G3198T	p.Q1066H	ACCACTCTGGCTG		18	2	0.11	14	0	0				16	0	0				A	73909787	C	A	73909787	3	1	49	1	0	0	0	0	1	0	0	0	5727	912	32	3	215	3	FBF1	17	73909787	Missense_Mutation	SNP	C	TCGA-2G-AAHA-01A-11D-A42Y-10	1559476	73909787	7285423	57	3437											
MED16	10025	mdanderson.org	37	chr19	886142	886142	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgggcttgccgccgaacagCgtgagcgacggtgagaactt	15	10	0	2	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_005481	exon5	c.G507A	p.T169T	GAACAGCGTGAGC		23	3	0.13	17	0	0				30	0	0				T	886142	C	T	886142	2	4	49	1	0	0	0	0	0	0	0	1	9483	755	27	1		1	MED16	19	886142	Silent	SNP	C	TCGA-2G-AAHA-01A-11D-A42Y-10		886142	58242841	58	3438											
LYL1	4066	broad.mit.edu	37	chr19	13211480	13211480	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacactcaccctcagccaGgtccagctcacagtggcttg	8	18	3	0	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	LYL1	NM_005583	exon3	c.C418A	p.L140M	CAGCCAGGTCCAG		221	5	0.02	160	0	0		17		24	0	0				T	13211480	G	T	13211480	3	4	49	1	0	0	0	0	1	0	0	0	9151	991	35	3	432	3	LYL1	19	13211480	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	12325338	13211480	45917503	59	3439											
PRX	57716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	40901937	40901937	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tccggagccctgggcagcttCacctctggtgccttcggaag	13	14	2	0	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_181882	exon7	c.G2322T	p.V774V	CAGCTTCACCTCT		88	33	0.38	64	0	0				6	4	0.67				A	40901937	C	A	40901937	2	1	49	1	0	0	0	0	0	0	0	1	12690	813	29	3		3	PRX	19	40901937	Silent	SNP	C	TCGA-2G-AAHA-01A-11D-A42Y-10	27690457	40901937	18227046	60	3440											
RALY	22913	broad.mit.edu	37	chr20	32664877	32664877	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggcgccggcggcggcggCggtggtggtggcagcggtgg	26	9	0	0	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	RALY	NM_016732	exon8	c.C702T	p.G234G	CGGCGGCGGTGGT		150	4	0.03	92	1	0.0108695652		44		140	2	0.01				T	32664877	C	T	32664877	2	4	49	1	0	0	0	0	0	0	0	1	13070	755	27	1		1	RALY	20	32664877	Silent	SNP	C	TCGA-2G-AAHA-01A-11D-A42Y-10		32664877	30360643	61	3441											
PTPRT	11122	broad.mit.edu	37	chr20	40790055	40790055	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgtgatgtgctgcagcaaGtcagccacccggatggcggg	16	11	1	1	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	PTPRT,bladder,carcinoma,-2,1	PTPRT	NM_133170	exon18	c.C2676A	p.D892E	CAGCAAGTCAGCC		207	5	0.02	184	0	0		372	1	2	0	0				T	40790055	G	T	40790055	3	4	49	1	0	0	0	0	1	0	0	0	12863	1020	36	3	1766	3	PTPRT	20	40790055	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	8125178	40790055	22235465	62	3442											
UCKL1	54963	mdanderson.org	37	chr20	62572531	62572531	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagcgtccggggcagcggGtggcactggtgtgccgaggc	19	12	1	0	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_017859	exon9	c.C954A	p.H318Q	CAGCGGGTGGCAC		24	2	0.08	14	0	0				77	0	0				T	62572531	G	T	62572531	3	4	49	1	0	0	0	0	1	0	0	0	16984	1252	44	3	720	3	UCKL1	20	62572531	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	21782476	62572531	452989	63	3443											
KRTAP10-4	386672	mdanderson.org	37	chr21	45994676	45994676	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcaatctagctgccagccAgcttgctgcaccacctcctg	8	17	1	0	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_198687	exon1	c.A1041G	p.P347P	CCAGCCAGCTTGC		52	5	0.1	30	0	0				0	0					G	45994676	A	G	45994676	2	3	49	1	0	0	0	0	0	0	0	1	8553	175	7	4		4	KRTAP10-4	21	45994676	Silent	SNP	A	TCGA-2G-AAHA-01A-11D-A42Y-10		45994676	2135219	64	3444											
LIF	0	broad.mit.edu	37	chr22	30642576	30642576	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcgtgtgtctgcggcgggTgggcgtccggctcgcgctgc	19	12	1	0	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	LIF	.	.	.	.	GGCGGGTGGGCGT		53	35	0.66	61	35	0.5737704918		18		0	0					G	30642576	T	G	30642576	3	3	49	1	0	0	0	0	1	0	0	0	8818	1711	59	4		4	LIF	22	30642576	Missense_Mutation	SNP	T	TCGA-2G-AAHA-01A-11D-A42Y-10		30642576	20661990	65	3445											
BRD1	23774	mdanderson.org	37	chr22	50192713	50192713	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccaggtcgtgccgcagccGctgccagtacttcagcttct	10	16	2	0	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_014577	exon3	c.C1579T	p.R527W	GCAGCCGCTGCCA		50	3	0.06	36	0	0				40	0	0				A	50192713	G	A	50192713	3	1	49	1	0	0	0	0	1	0	0	0	1503	1086	38	1	1637	1	BRD1	22	50192713	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	19550137	50192713	1111853	66	3446											
PNPLA4	8228	broad.mit.edu	37	chrX	7868821	7868821	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctcttgcttgggggaaaaAgggcttggttgagtctcacc	13	9	2	1	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	PNPLA4	NM_004650	exon7	c.T668C	p.L223P	GGAAAAAGGGCTT		430	8	0.02	300	0	0		24		20	0	0				G	7868821	A	G	7868821	3	3	49	1	0	0	0	0	1	0	0	0	12214	72	3	4	97	4	PNPLA4	23	7868821	Missense_Mutation	SNP	A	TCGA-2G-AAHA-01A-11D-A42Y-10		7868821	147401739	67	3447											
CYLC1	1538	broad.mit.edu	37	chrX	83129489	83129489	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagactacattcaatgaaaaAggggaaaaagcaagtacagg	10	5	1	2	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	CYLC1	NM_021118	exon4	c.A1773G	p.K591K	TGAAAAAGGGGAA		210	3	0.01	211	0	0		272		0	0					G	83129489	A	G	83129489	2	3	49	1	0	0	0	0	0	0	0	1	4164	69	3	4		4	CYLC1	23	83129489	Silent	SNP	A	TCGA-2G-AAHA-01A-11D-A42Y-10	75260668	83129489	72141071	68	3448											
SASH3	54440	mdanderson.org	37	chrX	128926627	128926627	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gagatgtgatccagatcattGaaaagccacctgtgggcacg	12	9	1	4	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	.	NM_018990	exon6	c.G616T	p.E206X	ATCATTGAAAAGC		36	3	0.08	29	0	0				52	0	0				T	128926627	G	T	128926627	4	4	49	1	0	0	0	0	0	1	0	0	13901	1291	45	3	638	3	SASH3	23	128926627	Nonsense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10	45797138	128926627	26343933	69	3449											
USP9Y	8287	broad.mit.edu	37	chrY	14952959	14952959	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggattatttgttgcctgaaGcagaagaaattactatgatt	9	4	0	4	novel		TCGA-2G-AAHA-01A-11D-A42Y-10	TCGA-2G-AAHA-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc8f661f-51cf-492d-aebf-c9ea75151dae	8cf937d8-88aa-4896-adb5-fd5479580dc3	.	USP9Y	NM_004654	exon37	c.G6112T	p.A2038S	CCTGAAGCAGAAG		180	4	0.02	149	0	0		49		13	0	0				T	14952959	G	T	14952959	3	4	49	1	0	0	0	0	1	0	0	0	17150	971	34	2	6250	2	USP9Y	24	14952959	Missense_Mutation	SNP	G	TCGA-2G-AAHA-01A-11D-A42Y-10		14952959	44420607	70	3450											
SCNN1D	6339	mdanderson.org	37	chr1	1223348	1223348	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caccggctcgggagcccctaCggccactgcaccgccggcgg	14	19	0	0	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_001130413	exon12	c.C1593T	p.Y531Y	CCCCTACGGCCAC		81	4	0.05	67	0	0				5	0	0				T	1223348	C	T	1223348	2	4	50	1	0	0	0	0	0	0	0	1	13982	547	19	1		1	SCNN1D	1	1223348	Silent	SNP	C	TCGA-2G-AAHC-01A-11D-A42Y-10		1223348	248027273	1	3451											
CSF3R	1441	broad.mit.edu	37	chr1	36932281	36932281	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgctcttgggtccccctGgagcacataggtctggacca	11	13	2	0	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	CSF3R	NM_156039	exon17	c.C2269A	p.Q757K	CCCCCTGGAGCAC		69	3	0.04	111	0	0		157		85	0	0				T	36932281	G	T	36932281	3	4	50	1	0	0	0	0	1	0	0	0	3962	1357	47	3	435	3	CSF3R	1	36932281	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10	35708933	36932281	212318340	2	3452											
FOXJ3	22887	broad.mit.edu	37	chr1	42693609	42693609	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taggcagcacatcttccttcGgattggtgtctattgcccag	10	11	2	0	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	FOXJ3	NM_001198852	exon5	c.C473A	p.P158Q	TCCTTCGGATTGG		96	3	0.03	160	0	0		59		25	0	0				T	42693609	G	T	42693609	3	4	50	1	0	0	0	0	1	0	0	0	6046	1116	39	1	1431	1	FOXJ3	1	42693609	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10	5761328	42693609	206557012	3	3453											
C1orf177	163747	hgsc.bcm.edu	37	chr1	55277575	55277575	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agggcctcatgtgcaggatgAgcaacaagccacacccccgg	12	14	1	1	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_001110533	exon5	c.A589G	p.S197G	AGGATGAGCAACA		123	5	0.04	120	0	0				0	0					G	55277575	A	G	55277575	3	3	50	1	0	0	0	0	1	0	0	0	2030	304	11	4	607	4	C1orf177	1	55277575	Missense_Mutation	SNP	A	TCGA-2G-AAHC-01A-11D-A42Y-10	12583966	55277575	193973046	4	3454											
SLC30A7	148867	broad.mit.edu;mdanderson.org	37	chr1	101387372	101387372	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cagatcctatctgttcaattCttatagccattcttatagtt	4	9	4	1	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	SLC30A7	NM_001144884	exon8	c.C817G	p.L273V	TCAATTCTTATAG		54	3	0.06	71	0	0		33		11	2	0.18				G	101387372	C	G	101387372	3	3	50	1	0	0	0	0	1	0	0	0	14614	913	32	5	847	5	SLC30A7	1	101387372	Missense_Mutation	SNP	C	TCGA-2G-AAHC-01A-11D-A42Y-10	46109797	101387372	147863249	5	3455											
DENND2C	163259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	115130380	115130380	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcggtcctggatgaatccTgcaaacatctgagtttccat	8	11	2	2	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_001256404	exon19	c.A2625G	p.A875A	GAATCCTGCAAAC		108	15	0.14	113	0	0				7	3	0.43				C	115130380	T	C	115130380	2	2	50	1	0	0	0	0	0	0	0	1	4458	1567	55	4		4	DENND2C	1	115130380	Silent	SNP	T	TCGA-2G-AAHC-01A-11D-A42Y-10	13743008	115130380	134120241	6	3456											
LONRF2	164832	mdanderson.org	37	chr2	100916315	100916315	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttatcctcttcaaagtgtagAcccagtataaaatacaaaac	4	9	2	1	rs11123823	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	LONRF2,NS,carcinoma,0,1	LONRF2	NM_198461	exon5	c.T1131A	p.G377G	GTGTAGACCCAGT		75	3	0.04	78	0	0		0	1	2	0	0				T	100916315	A	T	100916315	2	4	50	1	0	0	0	0	0	0	0	1	8939	262	10	5		5	LONRF2	2	100916315	Silent	SNP	A	TCGA-2G-AAHC-01A-11D-A42Y-10		100916315	142283058	7	3457											
TMEM87B	84910	mdanderson.org	37	chr2	112843654	112843654	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctcgccttctcgtgatcaTtgtgagcctgggctatggca	13	11	2	2	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_032824	exon9	c.T911C	p.I304T	TGATCATTGTGAG		50	3	0.06	75	0	0				18	0	0				C	112843654	T	C	112843654	3	2	50	1	0	0	0	0	1	0	0	0	16270	1493	52	4	945	4	TMEM87B	2	112843654	Missense_Mutation	SNP	T	TCGA-2G-AAHC-01A-11D-A42Y-10	11927339	112843654	130355719	8	3458											
PAX8	7849	ucsc.edu;mdanderson.org	37	chr2	113992973	113992973	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gggacctccctgtcgtacctGagaggagggcctggcccgtg	16	13	0	1	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	PAX8	NM_003466	exon9	c.C1085A	p.S362X	GTACCTGAGAGGA		52	5	0.1	45	0	0		42		15	0	0				T	113992973	G	T	113992973	3	4	50	1	0	0	0	0	1	0	0	0	11531	1303	45	3	283	3	PAX8	2	113992973	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10	1149319	113992973	129206400	9	3459											
THAP4	51078	mdanderson.org	37	chr2	242572743	242572743	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gctctgggccaggcccttgtCgggtcccaggctgctcccac	13	17	1	0	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_015963	exon2	c.G829A	p.D277N	CCTTGTCGGGTCC		34	3	0.09	48	0	0				231	0	0				T	242572743	C	T	242572743	3	4	50	1	0	0	0	0	1	0	0	0	15905	884	31	1	932	1	THAP4	2	242572743	Missense_Mutation	SNP	C	TCGA-2G-AAHC-01A-11D-A42Y-10	128579770	242572743	626630	10	3460											
HACL1	26061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	15633164	15633164	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	catggatgagacctgggccaGaaacaacaaggcagactcct	11	11	0	3	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_012260	exon4	c.C251T	p.S84F	GGGCCAGAAACAA		128	18	0.14	199	0	0				52	26	0.5				A	15633164	G	A	15633164	3	1	50	1	0	0	0	0	1	0	0	0	6981	942	33	3	1541	3	HACL1	3	15633164	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10		15633164	182389266	11	3461											
NISCH	11188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	52522318	52522318	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcacccacaactgtcgcaAccgcaacagcttcaagctca	7	16	2	0	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_007184	exon16	c.A2810G	p.N937S	GTCGCAACCGCAA		34	7	0.21	49	0	0				185	80	0.43				G	52522318	A	G	52522318	3	3	50	1	0	0	0	0	1	0	0	0	10478	43	2	4	2872	4	NISCH	3	52522318	Missense_Mutation	SNP	A	TCGA-2G-AAHC-01A-11D-A42Y-10	36889154	52522318	145500112	12	3462											
DNAJC13	23317	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	132199260	132199260	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggaataagaatccttgtGgacttgcttacccttgcaca	8	9	0	1	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	DNAJC13	NM_015268	exon26	c.G2820T	p.V940V	CCTTGTGGACTTG		45	5	0.11	83	0	0		253		47	0	0				T	132199260	G	T	132199260	2	4	50	1	0	0	0	0	0	0	0	1	4659	1335	47	3		3	DNAJC13	3	132199260	Silent	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10	79676942	132199260	65823170	13	3463											
GUF1	60558	mdanderson.org	37	chr4	44691417	44691417	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tagtagccttgctctgggtgCtggctggaggtaagattcat	14	7	2	1	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_021927	exon10	c.C1193T	p.A398V	TGGGTGCTGGCTG		47	3	0.06	81	0	0				41	0	0				T	44691417	C	T	44691417	3	4	50	1	0	0	0	0	1	0	0	0	6939	797	28	2	1231	2	GUF1	4	44691417	Missense_Mutation	SNP	C	TCGA-2G-AAHC-01A-11D-A42Y-10		44691417	146462859	14	3464											
ALB	213	mdanderson.org	37	chr4	74272367	74272367	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgttgattgcctttgctcaGtatcttcagcagtgtccatt	9	9	3	1	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_000477	exon3	c.G159A	p.Q53Q	TGCTCAGTATCTT		52	3	0.06	56	0	0				0	0					A	74272367	G	A	74272367	2	1	50	1	0	0	0	0	0	0	0	1	483	1020	36	3		3	ALB	4	74272367	Silent	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10	29580950	74272367	116881909	15	3465											
DSPP	1834	broad.mit.edu	37	chr4	88536863	88536863	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgacagcagtgatagcagtAatagtagtgacagcagcaat	12	6	0	3	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	DSPP	NM_014208	exon5	c.A3049G	p.N1017D	AGCAGTAATAGTA		56	4	0.07	71	1	0.014084507		174		0	0					G	88536863	A	G	88536863	3	3	50	1	0	0	0	0	1	0	0	0	4808	362	13	4	3063	4	DSPP	4	88536863	Missense_Mutation	SNP	A	TCGA-2G-AAHC-01A-11D-A42Y-10	14264496	88536863	102617413	16	3466											
SLC22A4	6583	mdanderson.org	37	chr5	131630459	131630459	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaccccggagcaccgctgTcgagtgccggacgccgcgaa	16	15	0	0	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_003059	exon1	c.T150C	p.C50C	CCGCTGTCGAGTG		54	3	0.06	55	0	0				2	0	0				C	131630459	T	C	131630459	2	2	50	1	0	0	0	0	0	0	0	1	14510	1673	58	4		4	SLC22A4	5	131630459	Silent	SNP	T	TCGA-2G-AAHC-01A-11D-A42Y-10		131630459	49284801	17	3467											
FOXF2	2295	broad.mit.edu	37	chr6	1391085	1391086	+	In_Frame_Ins	INS	-	-	GGC													ggggcgtcggtgcggccgggINSggcggcggcggcggcgacta					rs147426137	bycluster;by1000genomes	TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	FOXF2	NM_001452	exon1	c.903_904insGGC	p.G301delinsGG	GGCCGGGGGCGGC		7	3	0.43	6	0	0		28		0	0					GGC	1391086	-	GGC	1391085	7	5	50	1	0	1	1	0	0	0	0	0	6039	1219	43	0	905	0	FOXF2	6	1391085	In_Frame_Ins	INS	-	TCGA-2G-AAHC-01A-11D-A42Y-10		1391085	169723982	18	3468											
FOXC1	2296	mdanderson.org	37	chr6	1610801	1610801	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggcggctacaccgccatgCcggcccccatgagcgtgtac	14	16	0	1	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_001453	exon1	c.C121T	p.P41S	GCCATGCCGGCCC		45	3	0.07	65	0	0				0	0					T	1610801	C	T	1610801	3	4	50	1	0	0	0	0	1	0	0	0	6026	739	26	2	123	2	FOXC1	6	1610801	Missense_Mutation	SNP	C	TCGA-2G-AAHC-01A-11D-A42Y-10	219716	1610801	169504266	19	3469											
HIST1H2BJ	8970	broad.mit.edu	37	chr6	27100492	27100492	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaccgccttcttggagcccTttttcggggcgggagcagac	13	13	2	1	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	HIST1H2BJ,NS,carcinoma,+1,1	HIST1H2BJ	NM_021058	exon1	c.A38G	p.K13R	GAGCCCTTTTTCG		110	4	0.04	112	0	0		21	1	54	0	0				C	27100492	T	C	27100492	3	2	50	1	0	0	0	0	1	0	0	0	7189	1609	56	4	346	4	HIST1H2BJ	6	27100492	Missense_Mutation	SNP	T	TCGA-2G-AAHC-01A-11D-A42Y-10	25489691	27100492	144014575	20	3470											
ITPR3	3710	mdanderson.org	37	chr6	33655070	33655070	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcggaggtgagcccacgtgAagtgggccataacatctata	12	10	1	2	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_002224	exon45	c.A6143G	p.E2048G	CACGTGAAGTGGG		39	3	0.08	56	0	0				48	0	0				G	33655070	A	G	33655070	3	3	50	1	0	0	0	0	1	0	0	0	7965	246	9	4	6321	4	ITPR3	6	33655070	Missense_Mutation	SNP	A	TCGA-2G-AAHC-01A-11D-A42Y-10	6554578	33655070	137459997	21	3471											
FNDC1	84624	mdanderson.org	37	chr6	159654735	159654735	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcgagctccagagggatgcTccccacggccctccagaacc	12	17	0	2	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_032532	exon11	c.T3191C	p.L1064P	GGATGCTCCCCAC		26	2	0.08	30	0	0				5	0	0				C	159654735	T	C	159654735	3	2	50	1	0	0	0	0	1	0	0	0	6000	1551	54	4	3233	4	FNDC1	6	159654735	Missense_Mutation	SNP	T	TCGA-2G-AAHC-01A-11D-A42Y-10	125999665	159654735	11460332	22	3472											
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr7	4056919	4056919	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acagtatgagatacaggtggCggcgtacaacggggccggtc	16	9	0	1	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	SDK1,lower_third,carcinoma,0,1	SDK1	NM_152744	exon17	c.C2537T	p.A846V	AGGTGGCGGCGTA		115	5	0.04	171	0	0		0	1	6	0	0				T	4056919	C	T	4056919	3	4	50	1	0	0	0	0	1	0	0	0	14021	768	27	1	2603	1	SDK1	7	4056919	Missense_Mutation	SNP	C	TCGA-2G-AAHC-01A-11D-A42Y-10		4056919	155081744	23	3473											
TWIST1	7291	mdanderson.org	37	chr7	19156499	19156499	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtacctggccgccagcttgAgggtctgaatcttgctcagc	12	12	3	2	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_000474	exon1	c.T446C	p.L149P	AGCTTGAGGGTCT		41	3	0.07	81	0	0				125	0	0				G	19156499	A	G	19156499	3	3	50	1	0	0	0	0	1	0	0	0	16844	304	11	4	166	4	TWIST1	7	19156499	Missense_Mutation	SNP	A	TCGA-2G-AAHC-01A-11D-A42Y-10	15099580	19156499	139982164	24	3474											
FZD1	8321	mdanderson.org	37	chr7	90894958	90894958	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcaaccctcagcacggcGgcggagggcaccgtggcggc	16	16	1	0	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_003505	exon1	c.G763T	p.G255C	CACGGCGGCGGAG		32	3	0.09	21	0	0				8	0	0				T	90894958	G	T	90894958	3	4	50	1	0	0	0	0	1	0	0	0	6162	1116	39	1	765	1	FZD1	7	90894958	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10	71738459	90894958	68243705	25	3475											
THAP5	168451	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	108204781	108204781	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgttgctcttttaactctaGaagagttatctttgaatgta	7	5	3	3	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	THAP5	NM_001130475	exon3	c.C1042A	p.L348I	ACTCTAGAAGAGT		102	11	0.11	160	1	0.00625		51		27	5	0.19				T	108204781	G	T	108204781	3	4	50	1	0	0	0	0	1	0	0	0	15906	933	33	3	149	3	THAP5	7	108204781	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10	17309823	108204781	50933882	26	3476											
BHLHE22	27319	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	65494286	65494286	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcgcctacctcaaccagggCcaggccatctcggctgcctc	10	18	2	0	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	BHLHE22	NM_152414	exon1	c.C939T	p.G313G	CCAGGGCCAGGCC		26	4	0.15	27	0	0		21		1	0	0				T	65494286	C	T	65494286	2	4	50	1	0	0	0	0	0	0	0	1	1420	726	26	2		2	BHLHE22	8	65494286	Silent	SNP	C	TCGA-2G-AAHC-01A-11D-A42Y-10		65494286	80869736	27	3477											
RDH10	157506	broad.mit.edu;mdanderson.org	37	chr8	74207595	74207595	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcgtgctggccgcggcgcGctggctggtgcggcccaagg	19	13	0	0	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	RDH10	NM_172037	exon1	c.G71A	p.R24H	CGGCGCGCTGGCT		34	3	0.09	27	0	0		31		10	0	0				A	74207595	G	A	74207595	3	1	50	1	0	0	0	0	1	0	0	0	13240	1087	38	1	73	1	RDH10	8	74207595	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10	8713309	74207595	72156427	28	3478											
COL14A1	7373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	121210074	121210074	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcacagtatagtggtgaccCcagaatagaatggcacttga	11	8	0	4	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_021110	exon7	c.C617T	p.P206L	GTGACCCCAGAAT		104	17	0.16	108	0	0				11	0	0				T	121210074	C	T	121210074	3	4	50	1	0	0	0	0	1	0	0	0	3694	623	22	3	639	3	COL14A1	8	121210074	Missense_Mutation	SNP	C	TCGA-2G-AAHC-01A-11D-A42Y-10	47002479	121210074	25153948	29	3479											
GRINA	2907	broad.mit.edu	37	chr8	145065539	145065539	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cacagccccctttccagcccTccccctacggtcagccaggg	8	21	1	0	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	GRINA	NM_001009184	exon2	c.T148C	p.S50P	CAGCCCTCCCCCT		148	5	0.03	140	0	0		25		263	1	0				C	145065539	T	C	145065539	3	2	50	1	0	0	0	0	1	0	0	0	6825	1551	54	4	150	4	GRINA	8	145065539	Missense_Mutation	SNP	T	TCGA-2G-AAHC-01A-11D-A42Y-10	23855465	145065539	1298483	30	3480											
RUSC2	9853	mdanderson.org	37	chr9	35548533	35548533	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaagagctagagctgacgGtaaggagcctaagggttagc	15	7	0	3	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_014806	exon2	c.2014+1G>T	.	CTGACGGTAAGGA		21	2	0.1	25	0	0				0	0					T	35548533	G	T	35548533	5	4	50	1	0	0	0	0	0	0	1	0	13802	1275	44	3	2017	3	RUSC2	9	35548533	Splice_Site	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10		35548533	105664898	31	3481											
DDIT4	54541	mdanderson.org	37	chr10	74034544	74034544	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgccaacctgatgcagctGctgcaggagagcctggccca	13	13	0	2	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_019058	exon3	c.G297T	p.L99L	GCAGCTGCTGCAG		36	3	0.08	58	0	0				89	0	0				T	74034544	G	T	74034544	2	4	50	1	0	0	0	0	0	0	0	1	4354	1306	46	2		2	DDIT4	10	74034544	Silent	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10		74034544	61500203	32	3482											
PKD2L1	9033	ucsc.edu	37	chr10	102050229	102050229	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgatttgccttgtgggctGctcacaatagatcggcctag	11	12	1	1	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	PKD2L1	NM_016112	exon13	c.C2055A	p.S685R	TGGGCTGCTCACA		38	4	0.11	53	0	0		103		3	0	0				T	102050229	G	T	102050229	3	4	50	1	0	0	0	0	1	0	0	0	12014	1310	46	2	378	2	PKD2L1	10	102050229	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10	28015685	102050229	33484518	33	3483											
MUC6	4588	bcgsc.ca	37	chr11	1016871	1016871	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taggacctgtggaagagaagGgactgctccctgtaggtggg	17	7	0	1	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	MUC6	NM_005961	exon31	c.C5930A	p.P1977H	GAGAAGGGACTGC		357	13	0.04	409	9	0.02200489		408		1	0	0				T	1016871	G	T	1016871	3	4	50	1	0	0	0	0	1	0	0	0	10027	1232	43	3	1401	3	MUC6	11	1016871	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10		1016871	133989645	34	3484											
OR51B6	390058	broad.mit.edu	37	chr11	5373576	5373576	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgagctacatccacttccTtttcccaccttttatgaacc	3	14	0	2	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	OR51B6	NM_001004750	exon1	c.T839C	p.L280P	ACTTCCTTTTCCC		92	3	0.03	115	0	0		53		0	0					C	5373576	T	C	5373576	3	2	50	1	0	0	0	0	1	0	0	0	11139	1609	56	4	841	4	OR51B6	11	5373576	Missense_Mutation	SNP	T	TCGA-2G-AAHC-01A-11D-A42Y-10	4356705	5373576	129632940	35	3485											
CAPN1	823	bcgsc.ca	37	chr11	64956151	64956152	+	Frame_Shift_Ins	INS	-	-	ACACCAC													ccggaccatccgcaaatggaINSacaccacactctacgaaggc					novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	CAPN1	NM_001198869	exon10	c.1099_1100insACACCAC	p.N367fs	AAATGGAACACCA		84	5	0.06	115	0	0		44		128	0	0				ACACCAC	64956152	-	ACACCAC	64956151	7	5	50	1	0	1	1	0	0	0	0	0	2640	246	9	0	1133	0	CAPN1	11	64956151	Frame_Shift_Ins	INS	-	TCGA-2G-AAHC-01A-11D-A42Y-10	59582575	64956151	70050365	36	3486											
PPFIA1	8500	mdanderson.org	37	chr11	70184504	70184504	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcttgtcctaaacattgaaGcactgagggctgaactagac	10	9	0	4	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_003626	exon13	c.G1516T	p.A506S	ATTGAAGCACTGA		39	3	0.08	60	0	0				92	0	0				T	70184504	G	T	70184504	3	4	50	1	0	0	0	0	1	0	0	0	12353	971	34	2	1562	2	PPFIA1	11	70184504	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10	5228353	70184504	64822012	37	3487											
AMOTL1	154810	mdanderson.org	37	chr11	94592856	94592856	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgacactttgccatgaatgCcgcagccactgcagcagctg	10	15	0	1	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_130847	exon9	c.C2111T	p.A704V	TGAATGCCGCAGC		35	3	0.09	92	0	0				5	0	0				T	94592856	C	T	94592856	3	4	50	1	0	0	0	0	1	0	0	0	579	739	26	2	2145	2	AMOTL1	11	94592856	Missense_Mutation	SNP	C	TCGA-2G-AAHC-01A-11D-A42Y-10	24408352	94592856	40413660	38	3488											
C11orf1	64776	mdanderson.org	37	chr11	111754552	111754552	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	acctgaactggatcctccccGatacaaatgcacagaaaagt	7	12	0	2	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_022761	exon4	c.G401T	p.R134L	CTCCCCGATACAA		54	3	0.06	81	0	0				40	0	0				T	111754552	G	T	111754552	3	4	50	1	0	0	0	0	1	0	0	0	1633	1058	37	1	415	1	C11orf1	11	111754552	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10	17161696	111754552	23251964	39	3489											
RERGL	79785	mdanderson.org	37	chr12	18238558	18238558	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gttttgttttacttacttgaGaacaagggtcatatatttct	7	5	2	1	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_024730	exon4	c.C182A	p.S61Y	ACTTGAGAACAAG		41	3	0.07	57	0	0				0	0					T	18238558	G	T	18238558	3	4	50	1	0	0	0	0	1	0	0	0	13284	942	33	3	447	3	RERGL	12	18238558	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10		18238558	115613337	40	3490											
ASCL1	429	mdanderson.org	37	chr12	103352218	103352218	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagcagcaggcgccgcagCtgagaccggcggccgacggc	17	15	0	1	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_004316	exon1	c.C196T	p.L66L	CCGCAGCTGAGAC		44	3	0.07	35	0	0				0	0					T	103352218	C	T	103352218	2	4	50	1	0	0	0	0	0	0	0	1	1033	796	28	2		2	ASCL1	12	103352218	Silent	SNP	C	TCGA-2G-AAHC-01A-11D-A42Y-10	85113660	103352218	30499677	41	3491											
NT5DC3	51559	mdanderson.org	37	chr12	104190747	104190747	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tattcattcacgcaggacagGagggtcatctcgggcaggga	14	9	4	0	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_001031701	exon6	c.C678A	p.L226L	GGACAGGAGGGTC		42	3	0.07	72	0	0				19	0	0				T	104190747	G	T	104190747	2	4	50	1	0	0	0	0	0	0	0	1	10739	1161	41	3		3	NT5DC3	12	104190747	Silent	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10	838529	104190747	29661148	42	3492											
CYSLTR2	57105	mdanderson.org	37	chr13	49280977	49280977	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagaaaatttatgtccttGcaaccatccatctccgtatc	6	11	1	1	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_020377	exon1	c.G24T	p.L8F	GTCCTTGCAACCA		45	3	0.07	67	0	0				0	0					T	49280977	G	T	49280977	3	4	50	1	0	0	0	0	1	0	0	0	4225	1310	46	2	26	2	CYSLTR2	13	49280977	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10		49280977	65888901	43	3493											
LRRC16B	90668	mdanderson.org	37	chr14	24529228	24529228	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgagcgacatctcccaaGcctatcgcagcgcgcctgag	11	16	1	2	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_138360	exon23	c.G1918T	p.A640S	TCCCAAGCCTATC		49	3	0.06	46	0	0				10	0	0				T	24529228	G	T	24529228	3	4	50	1	0	0	0	0	1	0	0	0	9016	971	34	2	2008	2	LRRC16B	14	24529228	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10		24529228	82820312	44	3494											
MYO9A	4649	mdanderson.org	37	chr15	72208799	72208799	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcttgtagtgtcagtcttGtcaggtgctttaaagaattt	10	5	4	1	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_006901	exon19	c.C2597A	p.T866K	AGTCTTGTCAGGT		45	3	0.07	67	0	0				32	0	0				T	72208799	G	T	72208799	3	4	50	1	0	0	0	0	1	0	0	0	10131	1377	48	3	5145	3	MYO9A	15	72208799	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10		72208799	30322593	45	3495											
TSC2	7249	mdanderson.org	37	chr16	2106707	2106707	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccggctgagagcctcccGctgttcatcgttaccctctg	10	16	2	1	rs189380607	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_001114382	exon8	c.G711T	p.P237P	CCTCCCGCTGTTC		39	3	0.08	61	0	0				40	1	0.03				T	2106707	G	T	2106707	2	4	50	1	0	0	0	0	0	0	0	1	16666	1074	38	1		1	TSC2	16	2106707	Silent	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10		2106707	88248046	46	3496											
OR2C1	4993	mdanderson.org	37	chr16	3406282	3406282	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggccaccgagtgcatcctGctggtggtgatggcatttga	16	9	0	2	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_012368	exon1	c.G342T	p.L114L	CATCCTGCTGGTG		32	3	0.09	48	0	0				3	0	0				T	3406282	G	T	3406282	2	4	50	1	0	0	0	0	0	0	0	1	11039	1306	46	2		2	OR2C1	16	3406282	Silent	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10	1299575	3406282	86948471	47	3497											
IL27	246778	broad.mit.edu	37	chr16	28511194	28511194	+	Silent	SNP	C	C	T													ctctcctcctcctcctcctcCtcttcctcctcctcctcctc					novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	IL27	NM_145659	exon5	c.G510A	p.E170E	CTCCTCCTCTTCC		47	4	0.09	48	0	0		27		4	0	0				T	28511194	C	T	28511194	2	4	50	1	0	0	0	0	0	0	0	1	7723	680	24	3		3	IL27	16	28511194	Silent	SNP	C	TCGA-2G-AAHC-01A-11D-A42Y-10	25104912	28511194	61843559	48	3498	7	2									
IL27	246778	broad.mit.edu	37	chr16	28511197	28511197	+	Silent	SNP	T	T	C													tcctcctcctcctcctcctcTtcctcctcctcctcctccgg					novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	IL27	NM_145659	exon5	c.A507G	p.E169E	CTCCTCTTCCTCC		46	5	0.11	44	0	0		27		4	0	0				C	28511197	T	C	28511197	2	2	50	1	0	0	0	0	0	0	0	1	7723	1606	56	4		4	IL27	16	28511197	Silent	SNP	T	TCGA-2G-AAHC-01A-11D-A42Y-10	3	28511197	61843556	49	3499	7	2									
NEURL4	84461	mdanderson.org	37	chr17	7225246	7225246	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggccatgagcatagccagCggcacgcactgccctcgtgc	12	15	0	1	rs199946910	bycluster;by1000genomes	TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_032442	exon17	c.G2809A	p.A937T	AGCCAGCGGCACG		41	3	0.07	44	0	0	0			24	0	0				T	7225246	C	T	7225246	3	4	50	1	0	0	0	0	1	0	0	0	10393	768	27	1	1931	1	NEURL4	17	7225246	Missense_Mutation	SNP	C	TCGA-2G-AAHC-01A-11D-A42Y-10		7225246	73969964	50	3500											
CCL15	6359	mdanderson.org	37	chr17	34325386	34325386	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgaacacgggatgctttGtgagatgtaggaggtgcagc	17	5	0	2	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_032965	exon3	c.C178A	p.Q60K	TGCTTTGTGAGAT		44	4	0.09	61	0	0				3	0	0				T	34325386	G	T	34325386	3	4	50	1	0	0	0	0	1	0	0	0	2906	1386	48	3	171	3	CCL15	17	34325386	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10	27100140	34325386	46869824	51	3501											
PLEKHH3	79990	mdanderson.org	37	chr17	40822007	40822007	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccgccagggccaggtaggCggccatggcctcagctcggc	16	16	1	0	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_024927	exon11	c.G1942A	p.A648T	GGTAGGCGGCCAT		33	3	0.09	37	0	0				9	0	0				T	40822007	C	T	40822007	3	4	50	1	0	0	0	0	1	0	0	0	12125	768	27	1	451	1	PLEKHH3	17	40822007	Missense_Mutation	SNP	C	TCGA-2G-AAHC-01A-11D-A42Y-10	6496621	40822007	40373203	52	3502											
KCNH6	81033	broad.mit.edu	37	chr17	61607872	61607872	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccataaggtggtggagcGgacacagaacgtcactgaga	14	10	1	2	rs146703318	alternate_allele	TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	KCNH6	NM_030779	exon4	c.G644T	p.R215L	TGGAGCGGACACA		103	4	0.04	109	0	0		122		1	0	0				T	61607872	G	T	61607872	3	4	50	1	0	0	0	0	1	0	0	0	8079	1116	39	1	658	1	KCNH6	17	61607872	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10	20785865	61607872	19587338	53	3503											
GPRC5C	55890	mdanderson.org	37	chr17	72436963	72436963	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccatggatgagccggttGcaggtgggtctctgtggatg	16	7	1	1	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_022036	exon2	c.G1183T	p.A395S	CCGGTTGCAGGTG		37	3	0.08	38	0	0				256	0	0				T	72436963	G	T	72436963	3	4	50	1	0	0	0	0	1	0	0	0	6766	1319	46	2	1197	2	GPRC5C	17	72436963	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10	10829091	72436963	8758247	54	3504											
DUS1L	64118	mdanderson.org	37	chr17	80018749	80018749	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagcacctgcctgacaccGcagcttcagctcctggctca	8	19	2	1	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_022156	exon9	c.C931T	p.R311W	GACACCGCAGCTT		37	3	0.08	37	0	0				143	0	0				A	80018749	G	A	80018749	3	1	50	1	0	0	0	0	1	0	0	0	4831	1086	38	1	514	1	DUS1L	17	80018749	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10	7581786	80018749	1176461	55	3505											
MC4R	4160	mdanderson.org	37	chr18	58039043	58039043	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taaatgatgaacaaaatgccTgaaaccgtgcaagctgccca	8	10	0	3	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_005912	exon1	c.A540G	p.S180S	AATGCCTGAAACC		38	3	0.08	46	0	0				0	0					C	58039043	T	C	58039043	2	2	50	1	0	0	0	0	0	0	0	1	9415	1567	55	4		4	MC4R	18	58039043	Silent	SNP	T	TCGA-2G-AAHC-01A-11D-A42Y-10		58039043	20038205	56	3506											
CCDC102B	79839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	66504042	66504042	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cgattaattgaggaaacacaGatcttccagatgcaacaatc	7	9	1	3	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_001093729	exon4	c.G42T	p.Q14H	AACACAGATCTTC		43	6	0.14	52	0	0				4	0	0				T	66504042	G	T	66504042	3	4	50	1	0	0	0	0	1	0	0	0	2755	933	33	3	44	3	CCDC102B	18	66504042	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10	8464999	66504042	11573206	57	3507											
PTBP1	5725	mdanderson.org	37	chr19	804539	804539	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcctcccacagcgggcccAggcggccctgcaggcggtga	16	16	0	1	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_031991	exon6	c.A443G	p.Q148R	GGGCCCAGGCGGC		22	2	0.09	17	0	0				530	1	0				G	804539	A	G	804539	3	3	50	1	0	0	0	0	1	0	0	0	12773	188	7	4	465	4	PTBP1	19	804539	Missense_Mutation	SNP	A	TCGA-2G-AAHC-01A-11D-A42Y-10		804539	58324444	58	3508											
CD97	976	mdanderson.org	37	chr19	14513646	14513646	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaccttgagtcctccgatgGggaggcgggaagagaccctc	14	13	0	2	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_078481	exon12	c.G1421T	p.G474V	CCGATGGGGAGGC		51	3	0.06	48	0	0				252	0	0				T	14513646	G	T	14513646	3	4	50	1	0	0	0	0	1	0	0	0	3071	1232	43	3	1467	3	CD97	19	14513646	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10	13709107	14513646	44615337	59	3509											
MEF2B	100271849	mdanderson.org	37	chr19	19256700	19256700	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcgaggagcaagggatagGggaaggtcttaggaaagtcg	20	4	1	0	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_001145785	exon9	c.C1013A	p.P338H	GGATAGGGGAAGG		22	3	0.14	29	0	0				5	0	0				T	19256700	G	T	19256700	3	4	50	1	0	0	0	0	1	0	0	0	9505	1232	43	3	97	3	MEF2B	19	19256700	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10	4743054	19256700	39872283	60	3510											
NUDT19	390916	broad.mit.edu	37	chr19	33183263	33183263	+	Frame_Shift_Del	DEL	T	T	-													tctgcgccgtgcgggaggccTttgaggaggcgggcgtgctg					novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	NUDT19	NM_001105570	exon1	c.397delT	p.F133fs	GAGGCCTTTGAGG		6	2	0.33	16	0	0		15		1	0	0				-	33183263	T	-	33183263	7	5	50	1	0	1	0	1	0	0	0	0	10783	1609	56	0	399	0	NUDT19	19	33183263	Frame_Shift_Del	DEL	T	TCGA-2G-AAHC-01A-11D-A42Y-10	13926563	33183263	25945720	61	3511											
PPP1R14A	94274	mdanderson.org	37	chr19	38746835	38746835	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacttctccacgtccagccGccgctgcagctcccgccggt	9	21	1	0	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_033256	exon1	c.C145A	p.R49R	CCAGCCGCCGCTG		28	3	0.11	33	0	0				67	0	0				T	38746835	G	T	38746835	2	4	50	1	0	0	0	0	0	0	0	1	12407	1086	38	1		1	PPP1R14A	19	38746835	Silent	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10	5563572	38746835	20382148	62	3512											
CD79A	973	mdanderson.org	37	chr19	42383293	42383293	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agagccatgggggcatatacGtgtgccgggtccaggagggc	18	9	0	1	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_001783	exon2	c.G313T	p.V105L	ATATACGTGTGCC		20	3	0.15	18	0	0				148	0	0				T	42383293	G	T	42383293	3	4	50	1	0	0	0	0	1	0	0	0	3058	1145	40	1	319	1	CD79A	19	42383293	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10	3636458	42383293	16745690	63	3513											
COL18A1	80781	mdanderson.org	37	chr21	46897716	46897716	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttccgggcccacctggccGggcaggccccccaggatccc	13	19	0	0	rs373030953	alternate_allele	TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_030582	exon7	c.G1598T	p.R533L	CTGGCCGGGCAGG		47	3	0.06	41	0	0				43	0	0				T	46897716	G	T	46897716	3	4	50	1	0	0	0	0	1	0	0	0	3698	1116	39	1	2443	1	COL18A1	21	46897716	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10		46897716	1232179	64	3514											
FAM47C	442444	broad.mit.edu	37	chrX	37028094	37028094	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtccagtctccaccaggcAcctcctgagagtagcgtatc	10	14	1	1	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	FAM47C	NM_001013736	exon1	c.A1611G	p.A537A	CCAGGCACCTCCT		72	5	0.07	64	0	0		267		1	0	0				G	37028094	A	G	37028094	2	3	50	1	0	0	0	0	0	0	0	1	5606	146	6	4		4	FAM47C	23	37028094	Silent	SNP	A	TCGA-2G-AAHC-01A-11D-A42Y-10		37028094	118242466	65	3515											
PRRG1	5638	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	37312624	37312624	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caccccaccccccccaccagAtgaagtgtttgacagcagtg	8	17	0	3	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	PRRG1	NM_001173490	exon4	c.A407G	p.D136G	CACCAGATGAAGT		120	30	0.25	164	3	0.0182926829		42		5	1	0.2				G	37312624	A	G	37312624	3	3	50	1	0	0	0	0	1	0	0	0	12654	333	12	4	499	4	PRRG1	23	37312624	Missense_Mutation	SNP	A	TCGA-2G-AAHC-01A-11D-A42Y-10	284530	37312624	117957936	66	3516											
CASK	8573	broad.mit.edu	37	chrX	41390360	41390360	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catcctcgtggctgccgtacTccaagtactcgttattagag	9	12	0	1	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	CASK	NM_003688	exon25	c.A2405G	p.E802G	CCGTACTCCAAGT		81	3	0.04	73	0	0		93		66	0	0				C	41390360	T	C	41390360	3	2	50	1	0	0	0	0	1	0	0	0	2683	1551	54	4	372	4	CASK	23	41390360	Missense_Mutation	SNP	T	TCGA-2G-AAHC-01A-11D-A42Y-10	4077736	41390360	113880200	67	3517											
SLC7A3	84889	hgsc.bcm.edu	37	chrX	70149798	70149798	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatgcctgactccagtgtaCgtctgcgtaccagcttttga	9	13	1	2	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_032803	exon2	c.G50A	p.R17H	AGTGTACGTCTGC		98	4	0.04	129	0	0				13	0	0				T	70149798	C	T	70149798	3	4	50	1	0	0	0	0	1	0	0	0	14752	536	19	1	1853	1	SLC7A3	23	70149798	Missense_Mutation	SNP	C	TCGA-2G-AAHC-01A-11D-A42Y-10	28759438	70149798	85120762	68	3518											
HDAC8	55869	mdanderson.org	37	chrX	71571681	71571681	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cataatcaggaccatatgctGtgaaaaactgtaaggaaaag	9	6	1	1	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	.	NM_018486	exon10	c.C1013A	p.T338K	TATGCTGTGAAAA		49	3	0.06	49	0	0				10	0	0				T	71571681	G	T	71571681	3	4	50	1	0	0	0	0	1	0	0	0	7053	1377	48	3	128	3	HDAC8	23	71571681	Missense_Mutation	SNP	G	TCGA-2G-AAHC-01A-11D-A42Y-10	1421883	71571681	83698879	69	3519											
GRIA3	2892	bcgsc.ca;mdanderson.org	37	chrX	122599615	122599615	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtacgacaaaggagagtgCggcagcgggggcggtgactc	19	8	0	2	novel		TCGA-2G-AAHC-01A-11D-A42Y-10	TCGA-2G-AAHC-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e622a5c0-a57b-4806-800d-d80da386ad04	f324e93c-3bef-4aaa-8cee-548b180cde75	.	GRIA3	NM_000828	exon14	c.C2415T	p.C805C	AGAGTGCGGCAGC		109	5	0.05	121	0	0		386		0	0					T	122599615	C	T	122599615	2	4	50	1	0	0	0	0	0	0	0	1	6809	776	27	1		1	GRIA3	23	122599615	Silent	SNP	C	TCGA-2G-AAHC-01A-11D-A42Y-10	51027934	122599615	32670945	70	3520											
TAS1R3	83756	mdanderson.org	37	chr1	1267771	1267771	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgccctcttcaactacaGcatcagcagcaggctctcgc	7	18	4	0	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_152228	exon3	c.G860T	p.S287I	ACTACAGCATCAG		48	3	0.06	46	0	0				0	0					T	1267771	G	T	1267771	3	4	51	1	0	0	0	0	1	0	0	0	15620	971	34	2	870	2	TAS1R3	1	1267771	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10		1267771	247982850	1	3521											
NOTCH2	4853	broad.mit.edu	37	chr1	120458445	120458445	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagtcacaatggggggcaaGggctcccgaggggtggttat	17	7	1	0	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	NOTCH2	NM_024408	exon34	c.C6900A	p.P2300P	GGGCAAGGGCTCC		75	3	0.04	36	0	0		348		54	0	0				T	120458445	G	T	120458445	2	4	51	1	0	0	0	0	0	0	0	1	10594	987	35	3		3	NOTCH2	1	120458445	Silent	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	119190674	120458445	128792176	2	3522											
WBP1	23559	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	74685732	74685732	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggctgtaggtggaggtatGgctcgggccagcagcgggaa	21	7	0	0	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_012477	exon1	c.G3A	p.M1I	AGGTATGGCTCGG		152	44	0.29	111	0	0				134	29	0.22				A	74685732	G	A	74685732	3	1	51	1	0	0	0	0	1	0	0	0	17316	1348	47	3	5	3	WBP1	2	74685732	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10		74685732	168513641	3	3523											
DBI	1622	mdanderson.org	37	chr2	120129839	120129839	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agggacttccaaggaagatgCcatgaaagcttacatcaaca	9	9	1	2	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_001178017	exon4	c.C392T	p.A131V	AAGATGCCATGAA		42	3	0.07	38	0	0				911	0	0				T	120129839	C	T	120129839	3	4	51	1	0	0	0	0	1	0	0	0	4275	739	26	2	529	2	DBI	2	120129839	Missense_Mutation	SNP	C	TCGA-2G-AAHG-01A-11D-A42Y-10	45444107	120129839	123069534	4	3524											
NR4A2	4929	mdanderson.org	37	chr2	157183293	157183293	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaaagcaggtcttggtcgGctttgggcaggtctgcgaag	15	8	2	0	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_006186	exon6	c.C1298A	p.A433D	TGGTCGGCTTTGG		47	3	0.06	58	0	0				9	0	0				T	157183293	G	T	157183293	3	4	51	1	0	0	0	0	1	0	0	0	10680	1203	42	2	510	2	NR4A2	2	157183293	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	37053454	157183293	86016080	5	3525											
DGKD	8527	mdanderson.org	37	chr2	234370999	234370999	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tctcttcctctctagtatccGagaaatagctcagtctcacc	5	14	4	1	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_152879	exon25	c.G2987T	p.R996L	GTATCCGAGAAAT		47	3	0.06	37	0	0				140	0	0				T	234370999	G	T	234370999	3	4	51	1	0	0	0	0	1	0	0	0	4495	1058	37	1	3109	1	DGKD	2	234370999	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	77187706	234370999	8828374	6	3526											
RHOA	387	ucsc.edu	37	chr3	49399927	49399927	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtcctgccccagatcatGcctgcttcatcttggctagc	8	15	3	1	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	RHOA	NM_001664	exon5	c.408+2C>A	.	GATCATGCCTGCT		88	1	0.01	88	0	0		46		43	4	0.09				T	49399927	G	T	49399927	5	4	51	1	0	0	0	0	0	0	1	0	13380	1333	46	2	179	2	RHOA	3	49399927	Splice_Site	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10		49399927	148622503	7	3527											
ANAPC10	10393	broad.mit.edu	37	chr4	145916698	145916698	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatgtacgagttggcttctTatgattgtcagttaagggaa	12	4	2	1	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	ANAPC10	NM_001256709	exon7	c.A418G	p.K140E	GCTTCTTATGATT		112	3	0.03	171	0	0		12		123	0	0				C	145916698	T	C	145916698	3	2	51	1	0	0	0	0	1	0	0	0	595	1763	61	4	176	4	ANAPC10	4	145916698	Missense_Mutation	SNP	T	TCGA-2G-AAHG-01A-11D-A42Y-10		145916698	45237578	8	3528											
C5orf56	441108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	131811504	131811504	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggcatcgcctgtggacacCgcgtctgtgtctgtatatgg	14	10	2	0	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	.	.	.	.	GGACACCGCGTCT		51	19	0.37	51	0	0				4	0	0				T	131811504	C	T	131811504	1	4	51	0	1	0	0	0	0	0	0	0	2327	667	23	1		1	C5orf56	5	131811504	RNA	SNP	C	TCGA-2G-AAHG-01A-11D-A42Y-10		131811504	49103756	9	3529											
HK3	3101	mdanderson.org	37	chr5	176308126	176308126	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caacagcggtgaccagggccGcacctttgccggacccatcc	11	17	0	1	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	HK3,NS,carcinoma,+1,1	HK3	NM_002115	exon19	c.C2720T	p.A907V	AGGGCCGCACCTT		38	3	0.08	66	0	0		1	1	1	0	0				A	176308126	G	A	176308126	3	1	51	1	0	0	0	0	1	0	0	0	7232	1087	38	1	55	1	HK3	5	176308126	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	44496622	176308126	4607134	10	3530											
OR2Y1	134083	bcgsc.ca	37	chr5	180166235	180166235	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtaattatagtataaaaaAgggcaacaaattttccctca	7	6	1	0	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	OR2Y1	NM_001001657	exon1	c.T824C	p.L275P	TAAAAAAGGGCAA		48	4	0.08	71	0	0		49		0	0					G	180166235	A	G	180166235	3	3	51	1	0	0	0	0	1	0	0	0	11082	72	3	4	115	4	OR2Y1	5	180166235	Missense_Mutation	SNP	A	TCGA-2G-AAHG-01A-11D-A42Y-10	3858109	180166235	749025	11	3531											
CYP21A2	1589	mdanderson.org	37	chr6	32008888	32008888	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccccgggggatgggggccCacagcccgggccagagccag	18	15	0	1	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	.	.	.	.	GGGGCCCACAGCC		21	2	0.1	11	0	0				0	0					T	32008888	C	T	32008888	3	4	51	1	0	0	0	0	1	0	0	0	4176	594	21	3	3024	3	CYP21A2	6	32008888	Missense_Mutation	SNP	C	TCGA-2G-AAHG-01A-11D-A42Y-10		32008888	139106179	12	3532											
QKI	9444	mdanderson.org	37	chr6	163983060	163983060	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgcagctgatggagcttgCgattctgaatggcacctaca	12	9	1	2	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_206855	exon5	c.C593T	p.A198V	AGCTTGCGATTCT		46	3	0.07	54	0	0				180	0	0				T	163983060	C	T	163983060	3	4	51	1	0	0	0	0	1	0	0	0	12924	768	27	1	611	1	QKI	6	163983060	Missense_Mutation	SNP	C	TCGA-2G-AAHG-01A-11D-A42Y-10	131974172	163983060	7132007	13	3533											
INTS1	26173	ucsc.edu	37	chr7	1519274	1519274	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagggcgagggccacggggCggggactggagctctgccac	20	12	1	0	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	INTS1	NM_001080453	exon31	c.G4121A	p.R1374H	ACGGGGCGGGGAC		25	4	0.16	20	0	0		145		53	0	0				T	1519274	C	T	1519274	3	4	51	1	0	0	0	0	1	0	0	0	7818	768	27	1	2523	1	INTS1	7	1519274	Missense_Mutation	SNP	C	TCGA-2G-AAHG-01A-11D-A42Y-10		1519274	157619389	14	3534											
SNX8	29886	mdanderson.org	37	chr7	2304059	2304059	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatcagctcccggctgatgGcaaactgagcctggatgtca	13	11	2	2	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	SNX8,NS,carcinoma,+1,1	SNX8	NM_013321	exon6	c.C656T	p.A219V	CTGATGGCAAACT		31	3	0.1	28	0	0		1	1	336	0	0				A	2304059	G	A	2304059	3	1	51	1	0	0	0	0	1	0	0	0	14961	1203	42	2	765	2	SNX8	7	2304059	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	784785	2304059	156834604	15	3535											
TNRC18	84629	mdanderson.org	37	chr7	5364801	5364801	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggagctggcgtgaggagCcctggcctcagagggcaagg	19	10	1	2	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_001080495	exon20	c.G6226A	p.A2076T	GAGGAGCCCTGGC		39	3	0.08	28	0	0				49	0	0				T	5364801	C	T	5364801	3	4	51	1	0	0	0	0	1	0	0	0	16398	739	26	2	2724	2	TNRC18	7	5364801	Missense_Mutation	SNP	C	TCGA-2G-AAHG-01A-11D-A42Y-10	3060742	5364801	153773862	16	3536											
KLRG2	346689	mdanderson.org	37	chr7	139168282	139168282	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaggttgtcgcaccttcGcgggcacctgcggctgctcc	12	16	1	0	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_198508	exon1	c.C107A	p.A36E	ACCTTCGCGGGCA		30	3	0.1	22	0	0				288	0	0				T	139168282	G	T	139168282	3	4	51	1	0	0	0	0	1	0	0	0	8464	1087	38	1	1142	1	KLRG2	7	139168282	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	133803481	139168282	19970381	17	3537											
MLL3	58508	mdanderson.org	37	chr7	151945313	151945313	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtcatttcagagtccatcaAtccagtagaaagttcagaat	7	8	4	3	rs372718879	bycluster	TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_170606	exon14	c.T2206C	p.L736L	CCATCAATCCAGT		166	14	0.08	111	1	0.009009009				29	0	0				G	151945313	A	G	151945313	2	3	51	1	0	0	0	0	0	0	0	1	9669	98	4	4		4	MLL3	7	151945313	Silent	SNP	A	TCGA-2G-AAHG-01A-11D-A42Y-10	12777031	151945313	7193350	18	3538											
FGF20	26281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	16853180	16853180	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtactgatccatagagttctCctttgtcattcattccaaga	6	10	3	3	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	FGF20,leg,malignant_melanoma,0,1	FGF20	NM_019851	exon2	c.G374A	p.G125E	AGTTCTCCTTTGT		143	35	0.24	82	0	0		0	1	0	0					T	16853180	C	T	16853180	3	4	51	1	0	0	0	0	1	0	0	0	5881	855	30	3	269	3	FGF20	8	16853180	Missense_Mutation	SNP	C	TCGA-2G-AAHG-01A-11D-A42Y-10		16853180	129510842	19	3539											
DUSP4	1846	mdanderson.org	37	chr8	29207485	29207485	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcgtcgtagacgatgaccGccgagtagaggccggagcgc	16	12	0	3	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_001394	exon1	c.C311T	p.A104V	ATGACCGCCGAGT		39	3	0.08	22	0	0				0	0					A	29207485	G	A	29207485	3	1	51	1	0	0	0	0	1	0	0	0	4853	1087	38	1	1053	1	DUSP4	8	29207485	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	12354305	29207485	117156537	20	3540											
DOCK8	81704	mdanderson.org	37	chr9	396818	396818	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cccagcacgtacataacatgGacaaacgggacagttttcgg	10	11	0	0	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_203447	exon25	c.G3004T	p.D1002Y	AACATGGACAAAC		74	4	0.05	114	0	0				14	0	0				T	396818	G	T	396818	3	4	51	1	0	0	0	0	1	0	0	0	4720	1174	41	3	3102	3	DOCK8	9	396818	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10		396818	140816613	21	3541											
WNK2	65268	bcgsc.ca	37	chr9	95947703	95947703	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggccgaggcgaagcctgaGcccgggcgcactcgccggga	18	15	0	1	rs369083880	alternate_allele	TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	WNK2	NM_006648	exon1	c.G492T	p.E164D	GCCTGAGCCCGGG		44	4	0.09	38	0	0		277		23	0	0				T	95947703	G	T	95947703	3	4	51	1	0	0	0	0	1	0	0	0	17437	962	34	2	494	2	WNK2	9	95947703	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	95550885	95947703	45265728	22	3542											
CCDC3	83643	mdanderson.org	37	chr10	13043391	13043391	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtactgccagggcaggtgGttgtagaggccgggcgcctc	18	10	0	1	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_031455	exon1	c.C180A	p.N60K	CAGGTGGTTGTAG		48	3	0.06	42	0	0				10	0	0				T	13043391	G	T	13043391	3	4	51	1	0	0	0	0	1	0	0	0	2823	1252	44	3	644	3	CCDC3	10	13043391	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10		13043391	122491356	23	3543											
PDE3B	5140	mdanderson.org	37	chr11	14666437	14666437	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctttcaaatcagggaagcGcctcttcatcctcgactgtc	7	13	5	0	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_000922	exon1	c.G816T	p.A272A	GGAAGCGCCTCTT		44	3	0.07	84	0	0				18	1	0.06				T	14666437	G	T	14666437	2	4	51	1	0	0	0	0	0	0	0	1	11684	1074	38	1		1	PDE3B	11	14666437	Silent	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10		14666437	120340079	24	3544											
MYBPC3	4607	mdanderson.org	37	chr11	47372906	47372906	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgtatgccgtgtgccctctGtggccaggccgtacttgttg	14	12	1	0	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_000256	exon2	c.C176T	p.T59I	CCCTCTGTGGCCA		52	3	0.06	69	0	0				0	0					A	47372906	G	A	47372906	3	1	51	1	0	0	0	0	1	0	0	0	10060	1377	48	3	3773	3	MYBPC3	11	47372906	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	32706469	47372906	87633610	25	3545											
LRP5	4041	broad.mit.edu	37	chr11	68207377	68207377	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcacgaaggccacgctgtAcccgccggtgaggggcgggg	18	13	0	1	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	LRP5	NM_002335	exon21	c.A4481C	p.Y1494S	CGCTGTACCCGCC		11	5	0.45	30	14	0.4666666667		136		26	1	0.04				C	68207377	A	C	68207377	3	2	51	1	0	0	0	0	1	0	0	0	9004	391	14	4	4563	4	LRP5	11	68207377	Missense_Mutation	SNP	A	TCGA-2G-AAHG-01A-11D-A42Y-10	20834471	68207377	66799139	26	3546											
SHANK2	22941	ucsc.edu	37	chr11	70653168	70653168	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	acttggggttggtatggcttGacagcgacgaagagcctccc	14	10	0	2	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	SHANK2	.	.	.	.	TGGCTTGACAGCG		66	11	0.17	120	6	0.05		340		0	0					T	70653168	G	T	70653168	4	4	51	1	0	0	0	0	0	1	0	0	14319	1277	45	3	4092	3	SHANK2	11	70653168	Nonsense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	2445791	70653168	64353348	27	3547											
GRM5	2915	mdanderson.org	37	chr11	88300321	88300321	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatcccctacatgcatgcGcaccacggtagatgtggtga	11	13	0	2	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	GRM5_ENST00000418177,NS,carcinoma,0,2	GRM5_ENST00000418177	NM_000842	exon8	c.C2530A	p.R844S	GCATGCGCACCAC		37	3	0.08	80	0	0		0	2	0	0					T	88300321	G	T	88300321	3	4	51	1	0	0	0	0	1	0	0	0	6840	1087	38	1	1120	1	GRM5	11	88300321	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	17647153	88300321	46706195	28	3548											
FAM60A	58516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	31440707	31440707	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcacttgaggtggtactgtGagcatcagaatctgcaataa	12	7	2	3	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_021238	exon6	c.C367T	p.H123Y	TACTGTGAGCATC		101	14	0.14	47	0	0				670	114	0.17				A	31440707	G	A	31440707	3	1	51	1	0	0	0	0	1	0	0	0	5629	1290	45	3	306	3	FAM60A	12	31440707	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10		31440707	102411188	29	3549											
ATF7	11016	mdanderson.org	37	chr12	53918523	53918523	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtcgccccccagtactaGgggtgggctgagctggtgag	17	12	0	2	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_006856	exon10	c.C950A	p.P317H	GTACTAGGGGTGG		22	2	0.09	27	0	0				25	0	0				T	53918523	G	T	53918523	3	4	51	1	0	0	0	0	1	0	0	0	1085	1000	35	3	513	3	ATF7	12	53918523	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	22477816	53918523	79933372	30	3550											
CCDC64	92558	mdanderson.org	37	chr12	120518734	120518734	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gactgccctaaaagaggagaGagaccgactcagagtcactt	11	10	2	4	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_207311	exon7	c.G1352T	p.R451I	AGGAGAGAGACCG		45	4	0.09	30	0	0				29	0	0				T	120518734	G	T	120518734	3	4	51	1	0	0	0	0	1	0	0	0	2855	942	33	3	1378	3	CCDC64	12	120518734	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	66600211	120518734	13333161	31	3551											
RPLP0	6175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	120637138	120637138	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagctgggttgttttccaGgtgccctcggatggccttgc	14	11	0	1	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_053275	exon3	c.C205T	p.L69L	TTTCCAGGTGCCC		101	20	0.2	86	0	0				42352	12145	0.29				A	120637138	G	A	120637138	2	1	51	1	0	0	0	0	0	0	0	1	13655	991	35	3		3	RPLP0	12	120637138	Silent	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	118404	120637138	13214757	32	3552											
SACS	26278	broad.mit.edu	37	chr13	23907043	23907043	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgaattccgcgggggcccGctcaggacataagaatggta	13	9	1	2	rs115155117	bycluster;by1000genomes	TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	SACS	NM_014363	exon10	c.C10972T	p.R3658W	GGGCCCGCTCAGG		68	3	0.04	56	0	0		871		19	0	0				A	23907043	G	A	23907043	3	1	51	1	0	0	0	0	1	0	0	0	13855	1086	38	1	2771	1	SACS	13	23907043	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10		23907043	91262835	33	3553											
SLC25A15	10166	mdanderson.org	37	chr13	41373332	41373332	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttccgtggcttctacaaGggtaccagtccagcactaat	10	12	1	0	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_014252	exon3	c.G195T	p.K65N	CTACAAGGGTACC		142	5	0.04	172	0	0				34	0	0				T	41373332	G	T	41373332	3	4	51	1	0	0	0	0	1	0	0	0	14531	991	35	3	201	3	SLC25A15	13	41373332	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	17466289	41373332	73796546	34	3554											
ZC3H13	23091	mdanderson.org	37	chr13	46562935	46562935	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tacacaccttccctcctttcAtggcgtcgatcatgagactg	7	14	2	1	rs1134071	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_015070	exon9	c.T1242A	p.H414Q	CCTTTCATGGCGT		62	2	0.03	85	0	0				82	0	0				T	46562935	A	T	46562935	3	4	51	1	0	0	0	0	1	0	0	0	17623	214	8	5	3488	5	ZC3H13	13	46562935	Missense_Mutation	SNP	A	TCGA-2G-AAHG-01A-11D-A42Y-10	5189603	46562935	68606943	35	3555											
TRIM13	10206	hgsc.bcm.edu	37	chr13	50588497	50588500	+	RNA	DEL	ACAC	ACAC	-													aaaaatatatatatatatatAcacacacacacacacatatg					rs10676627	alternate_allele	TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	ACAC	ACAC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	TRIM13	.	.	.	.	ATATATACACACA		27	16	0.59	23	0	0		30		1	0	0				-	50588500	ACAC	-	50588497	6	5	51	0	1	1	0	1	0	0	0	0	16548	406	14	0		0	TRIM13	13	50588497	RNA	DEL	ACAC	TCGA-2G-AAHG-01A-11D-A42Y-10	4025562	50588497	64581381	36	3556											
ATP5S	27109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	50789405	50789405	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcgatcgacgccaccgactCttgtatcatgagcattggat	11	11	2	1	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_015684	exon3	c.C329T	p.S110F	CCGACTCTTGTAT		132	30	0.23	122	0	0				59	22	0.37				T	50789405	C	T	50789405	3	4	51	1	0	0	0	0	1	0	0	0	1161	913	32	3	339	3	ATP5S	14	50789405	Missense_Mutation	SNP	C	TCGA-2G-AAHG-01A-11D-A42Y-10		50789405	56560135	37	3557											
PLEKHG3	26030	mdanderson.org	37	chr14	65209934	65209934	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagctctgctccaagtatgCctcccgcgatgaggcacgcc	11	15	1	2	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_015549	exon15	c.C3005T	p.A1002V	AGTATGCCTCCCG		27	3	0.11	36	0	0				16	0	0				T	65209934	C	T	65209934	3	4	51	1	0	0	0	0	1	0	0	0	12117	739	26	2	3059	2	PLEKHG3	14	65209934	Missense_Mutation	SNP	C	TCGA-2G-AAHG-01A-11D-A42Y-10	14420529	65209934	42139606	38	3558											
ISM2	145501	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr14	77950769	77950769	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgggtcctgggaggcgtgGcattccctggggtcagggct	18	11	1	0	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	ISM2,colon,carcinoma,+1,1	ISM2	NM_199296	exon3	c.C524T	p.A175V	GGCGTGGCATTCC		129	6	0.05	105	0	0		68	1	9	0	0				A	77950769	G	A	77950769	3	1	51	1	0	0	0	0	1	0	0	0	7904	1203	42	2	1211	2	ISM2	14	77950769	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	12740835	77950769	29398771	39	3559											
FAM181A	90050	mdanderson.org	37	chr14	94395420	94395420	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggatgtggacggcctgggGcagaaggtgtgcaggcccgt	19	8	0	1	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_138344	exon3	c.G975T	p.G325G	CCTGGGGCAGAAG		35	3	0.09	33	0	0				0	0					T	94395420	G	T	94395420	2	4	51	1	0	0	0	0	0	0	0	1	5538	1190	42	2		2	FAM181A	14	94395420	Silent	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	16444651	94395420	12954120	40	3560											
EID1	23741	mdanderson.org	37	chr15	49170510	49170510	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctatccctgcgtccctcccGcagcggggcccaacagctcg	11	19	0	0	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_014335	exon1	c.G137A	p.R46H	CCTCCCGCAGCGG		39	3	0.08	52	0	0				253	0	0				A	49170510	G	A	49170510	3	1	51	1	0	0	0	0	1	0	0	0	5012	1087	38	1	139	1	EID1	15	49170510	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10		49170510	53360882	41	3561											
MESP2	145873	hgsc.bcm.edu	37	chr15	90320132	90320132	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcaggcggaggggcaggggCaagggcaggggcaggggcag	25	8	0	0	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	MESP2,NS,carcinoma,-2,1	MESP2	NM_001039958	exon1	c.C544G	p.Q182E	CAGGGGCAAGGGC		32	2	0.06	15	0	0		-2	1	0	0					G	90320132	C	G	90320132	3	3	51	1	0	0	0	0	1	0	0	0	9532	711	25	5	546	5	MESP2	15	90320132	Missense_Mutation	SNP	C	TCGA-2G-AAHG-01A-11D-A42Y-10	41149622	90320132	12211260	42	3562			1	7		2	2	42	N	C_A	8.343553e-05
MESP2	145873	broad.mit.edu;mdanderson.org	37	chr15	90320173	90320173	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcaagggcaggggcaaggAcaggggcaaggacaggggca	22	7	0	0	rs113636330		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	MESP2	NM_001039958	exon1	c.A585G	p.G195G	GCAAGGACAGGGG		38	2	0.05	21	0	0		20		1	0	0				G	90320173	A	G	90320173	2	3	51	1	0	0	0	0	0	0	0	1	9532	262	10	4		4	MESP2	15	90320173	Silent	SNP	A	TCGA-2G-AAHG-01A-11D-A42Y-10	41	90320173	12211219	43	3563			1	7		2	2	42	N	C_A	8.343553e-05
NLRC3	197358	broad.mit.edu	37	chr16	3601981	3601982	+	RNA	INS	-	-	CACC													catcagtgtatcccttcattINScatccatccatccatccatc					rs113120190	bycluster;by1000genomes	TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	NLRC3	.	.	.	.	CTTCATTCATCCA		17	8	0.47	11	0	0		103		0	0					CACC	3601982	-	CACC	3601981	6	5	51	0	1	1	1	0	0	0	0	0	10514	1798	62	0		0	NLRC3	16	3601981	RNA	INS	-	TCGA-2G-AAHG-01A-11D-A42Y-10		3601981	86752772	44	3564											
SEC14L5	9717	mdanderson.org	37	chr16	5041986	5041986	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctccctggaggcccacgggCcccgtagcaccctggggccc	14	19	0	0	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_014692	exon6	c.C622T	p.P208S	CACGGGCCCCGTA		31	3	0.1	16	0	0				3	0	0				T	5041986	C	T	5041986	3	4	51	1	0	0	0	0	1	0	0	0	14038	739	26	2	640	2	SEC14L5	16	5041986	Missense_Mutation	SNP	C	TCGA-2G-AAHG-01A-11D-A42Y-10	1440005	5041986	85312767	45	3565											
UBFD1	56061	broad.mit.edu	37	chr16	23568933	23568933	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgggagcggaggaggcgggTctccatagaaacctccacct	14	12	1	1	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	UBFD1	.	.	.	.	GGCGGGTCTCCAT		42	15	0.36	21	7	0.3333333333		16		2	0	0				G	23568933	T	G	23568933	3	3	51	1	0	0	0	0	1	0	0	0	16944	1682	58	4		4	UBFD1	16	23568933	Missense_Mutation	SNP	T	TCGA-2G-AAHG-01A-11D-A42Y-10	18526947	23568933	66785820	46	3566											
ARHGAP17	55114	ucsc.edu	37	chr16	24965936	24965936	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccctcacctcctccttcatGcctgtctccagaagcagcat	5	19	3	1	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	ARHGAP17	NM_001006634	exon10	c.C840T	p.G280G	CTTCATGCCTGTC		41	4	0.1	43	0	0		138		68	0	0				A	24965936	G	A	24965936	2	1	51	1	0	0	0	0	0	0	0	1	864	1306	46	2		2	ARHGAP17	16	24965936	Silent	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	1397003	24965936	65388817	47	3567											
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	29998788	29998788	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctctggtggctatggcagcGgggggcagatgggtgcggca	20	9	1	1	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	TAOK2_ENST00000308893,colon,carcinoma,+1,1	TAOK2_ENST00000308893	NM_016151	exon16	c.G3195A	p.A1065A	GGCAGCGGGGGGC		89	23	0.26	82	0	0		1	1	80	27	0.34				A	29998788	G	A	29998788	2	1	51	1	0	0	0	0	0	0	0	1	15604	1103	39	1		1	TAOK2	16	29998788	Silent	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	5032852	29998788	60355965	48	3568											
PHKB	5257	mdanderson.org	37	chr16	47622988	47622988	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attggaagatcccaacagatGctactacaagccagctgaaa	8	10	0	3	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_000293	exon10	c.G1043T	p.C348F	ACAGATGCTACTA		64	4	0.06	62	0	0				60	0	0				T	47622988	G	T	47622988	3	4	51	1	0	0	0	0	1	0	0	0	11892	1319	46	2	1140	2	PHKB	16	47622988	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	17624200	47622988	42731765	49	3569											
POLR2A	5430	broad.mit.edu	37	chr17	7407047	7407047	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcatggcagaggagtttcgGctcagtggggaggccttcga	17	9	1	1	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	POLR2A	NM_000937	exon19	c.G3177T	p.R1059R	GTTTCGGCTCAGT		257	4	0.02	209	0	0		157		196	0	0				T	7407047	G	T	7407047	2	4	51	1	0	0	0	0	0	0	0	1	12261	1190	42	2		2	POLR2A	17	7407047	Silent	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10		7407047	73788163	50	3570											
GUCY2D	3000	mdanderson.org	37	chr17	7909965	7909965	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtacccggatgcacttcccGcgtgggggatcagcacccgg	15	14	1	0	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_000180	exon4	c.G1311T	p.P437P	CTTCCCGCGTGGG		51	3	0.06	56	0	0				0	0					T	7909965	G	T	7909965	2	4	51	1	0	0	0	0	0	0	0	1	6937	1074	38	1		1	GUCY2D	17	7909965	Silent	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	502918	7909965	73285245	51	3571											
ACACA	31	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	35445916	35445916	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctctgctgatgcatttgaTgttttcctctattaccgagt	8	9	2	2	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	ACACA_ENST00000353139,bladder,carcinoma,+2,2	ACACA_ENST00000353139	NM_198834	exon55	c.A6985C	p.I2329L	ATTTGATGTTTTC		302	83	0.27	273	0	0		2	2	232	87	0.38				G	35445916	T	G	35445916	3	3	51	1	0	0	0	0	1	0	0	0	106	1464	51	4	174	4	ACACA	17	35445916	Missense_Mutation	SNP	T	TCGA-2G-AAHG-01A-11D-A42Y-10	27535951	35445916	45749294	52	3572											
CDH19	28513	bcgsc.ca;mdanderson.org	37	chr18	64172301	64172301	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaatatggcactgtcgggGccaacttgcaaagactgcct	11	11	0	2	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	CDH19	NM_021153	exon12	c.C2067T	p.G689G	GTCGGGGCCAACT		89	5	0.06	99	0	0		141		1	0	0				A	64172301	G	A	64172301	2	1	51	1	0	0	0	0	0	0	0	1	3126	1190	42	2		2	CDH19	18	64172301	Silent	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10		64172301	13904947	53	3573											
ACTL9	284382	mdanderson.org	37	chr19	8808404	8808404	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtccagacgctccgtggcGtggagcaggttgtagccctg	16	11	0	1	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	ACTL9,NS,carcinoma,0,2	ACTL9	NM_178525	exon1	c.C648A	p.H216Q	CGTGGCGTGGAGC		15	2	0.13	13	0	0		0	2	0	0					T	8808404	G	T	8808404	3	4	51	1	0	0	0	0	1	0	0	0	203	1136	40	1	606	1	ACTL9	19	8808404	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10		8808404	50320579	54	3574											
ZNF433	163059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	12126012	12126012	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attcataaggtttctctccaGtgtgagtccttccatgaatt	7	9	2	2	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_001080411	exon4	c.C1670T	p.T557I	TCTCCAGTGTGAG		171	55	0.32	137	0	0				21	9	0.43				A	12126012	G	A	12126012	3	1	51	1	0	0	0	0	1	0	0	0	17963	1029	36	3	355	3	ZNF433	19	12126012	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	3317608	12126012	47002971	55	3575											
RHPN2	85415	mdanderson.org	37	chr19	33517507	33517507	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagctcagctccagccgcaCttgctcccgcacctttgagt	9	16	1	1	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	RHPN2,face,carcinoma,0,2	RHPN2	NM_033103	exon3	c.G217A	p.V73M	GCCGCACTTGCTC		25	3	0.12	19	0	0		0	2	26	0	0				T	33517507	C	T	33517507	3	4	51	1	0	0	0	0	1	0	0	0	13400	565	20	3	1895	3	RHPN2	19	33517507	Missense_Mutation	SNP	C	TCGA-2G-AAHG-01A-11D-A42Y-10	21391495	33517507	25611476	56	3576											
IFNAR2	3455	broad.mit.edu	37	chr21	34635615	34635615	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgatgctatcgtctcatcTggaagagatggttgacccag	11	9	3	3	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	IFNAR2	NM_207585	exon9	c.T1358C	p.L453P	CTCATCTGGAAGA		146	4	0.03	79	0	0		44		35	0	0				C	34635615	T	C	34635615	3	2	51	1	0	0	0	0	1	0	0	0	7588	1580	55	4	1548	4	IFNAR2	21	34635615	Missense_Mutation	SNP	T	TCGA-2G-AAHG-01A-11D-A42Y-10		34635615	13494280	57	3577											
CARD10	29775	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	37903924	37903924	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagtccttctgcagcgtgCggtgcttgagccgcaggtct	13	13	2	1	rs150236189	byfrequency	TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	CARD10	NM_014550	exon6	c.G1103A	p.R368H	AGCGTGCGGTGCT		132	63	0.48	115	1	0.0086956522		55		77	50	0.65				T	37903924	C	T	37903924	3	4	51	1	0	0	0	0	1	0	0	0	2662	768	27	1	2055	1	CARD10	22	37903924	Missense_Mutation	SNP	C	TCGA-2G-AAHG-01A-11D-A42Y-10		37903924	13400642	58	3578											
ADSL	158	broad.mit.edu	37	chr22	40757555	40757555	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acgttgctgcagtcttgcccGccacctgatgacccttgtca	9	15	2	2	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	ADSL	NM_001123378	exon9	c.G926A	p.R309H	TTGCCCGCCACCT		93	4	0.04	64	0	0		98		974	0	0				A	40757555	G	A	40757555	3	1	51	1	0	0	0	0	1	0	0	0	345	1087	38	1	960	1	ADSL	22	40757555	Missense_Mutation	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	2853631	40757555	10547011	59	3579											
VCX3B	425054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	8434340	8434340	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccactgagtcaggagagccaGgtggaggaaccactgagtca	14	10	2	3	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_001001888	exon3	c.G657A	p.Q219Q	GAGCCAGGTGGAG		434	179	0.41	289	1	0.0034602076				62	7	0.11				A	8434340	G	A	8434340	2	1	51	1	0	0	0	0	0	0	0	1	17204	991	35	3		3	VCX3B	23	8434340	Silent	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10		8434340	146836220	60	3580											
NUDT10	170685	broad.mit.edu	37	chrX	51076024	51076024	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccgagaggtgtacgaagaGgcgggagtcaaggggaagtt	19	5	1	2	rs2801626		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	NUDT10	NM_153183	exon2	c.G207A	p.E69E	CGAAGAGGCGGGA		341	8	0.02	203	1	0.0049261084		28		109	0	0				A	51076024	G	A	51076024	2	1	51	1	0	0	0	0	0	0	0	1	10773	991	35	3		3	NUDT10	23	51076024	Silent	SNP	G	TCGA-2G-AAHG-01A-11D-A42Y-10	42641684	51076024	104194536	61	3581											
SPIN2B	474343	broad.mit.edu	37	chrX	57146615	57146615	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtgcttgagctaagaccaTccccctccattcatccttag	7	14	1	2	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	SPIN2B	NM_001006683	exon2	c.A448G	p.M150V	AGACCATCCCCCT		541	7	0.01	349	1	0.0028653295		11		13	0	0				C	57146615	T	C	57146615	3	2	51	1	0	0	0	0	1	0	0	0	15109	1435	50	4	332	4	SPIN2B	23	57146615	Missense_Mutation	SNP	T	TCGA-2G-AAHG-01A-11D-A42Y-10	6070591	57146615	98123945	62	3582											
HS6ST2	90161	mdanderson.org	37	chrX	132092425	132092425	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aagacgcctttcggggcttgTccaggagcggccgggtgtgg	18	10	0	1	novel		TCGA-2G-AAHG-01A-11D-A42Y-10	TCGA-2G-AAHG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10eaeb31-4b4d-4a4e-b429-25eaf4d45fa9	6a857e34-f9b6-4512-980b-8bc82ecddee7	.	.	NM_001077188	exon2	c.A206G	p.D69G	GGCTTGTCCAGGA		16	3	0.19	13	0	0				0	0					C	132092425	T	C	132092425	3	2	51	1	0	0	0	0	1	0	0	0	7411	1667	58	4		4	HS6ST2	23	132092425	Missense_Mutation	SNP	T	TCGA-2G-AAHG-01A-11D-A42Y-10	74945810	132092425	23178135	63	3583											
LRRC47	57470	mdanderson.org	37	chr1	3703430	3703430	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctgcgaggtgaggaagcGcttgagtgcattccctggct	14	11	0	2	rs151150139	bycluster;byfrequency;alternate_allele	TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_020710	exon2	c.C1060A	p.R354S	GGAAGCGCTTGAG		50	3	0.06	70	0	0				124	0	0				T	3703430	G	T	3703430	3	4	52	1	0	0	0	0	1	0	0	0	9048	1087	38	1	715	1	LRRC47	1	3703430	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10		3703430	245547191	1	3584											
MUL1	79594	broad.mit.edu	37	chr1	20834437	20834437	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggccttctgccggtacacGgagtacagggcggcggtgac	17	12	1	1	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	MUL1	NM_024544	exon1	c.C81A	p.S27S	GTACACGGAGTAC		89	4	0.04	136	2	0.0147058824		34		7	0	0				T	20834437	G	T	20834437	2	4	52	1	0	0	0	0	0	0	0	1	10031	1103	39	1		1	MUL1	1	20834437	Silent	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	17131007	20834437	228416184	2	3585											
FOXD3	27022	hgsc.bcm.edu	37	chr1	63789225	63789225	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agaagaagctgaccctgagcGgcatctgcgagttcatcagc	12	11	3	4	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_012183	exon1	c.G496A	p.G166S	CTGAGCGGCATCT		94	4	0.04	113	0	0				0	0					A	63789225	G	A	63789225	3	1	52	1	0	0	0	0	1	0	0	0	6030	1116	39	1	498	1	FOXD3	1	63789225	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	42954788	63789225	185461396	3	3586											
MTF2	22823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	93599295	93599295	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catagaaaaaaaaggaaagaAaaaatctgtaggtcgtccac	8	6	1	2	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_007358	exon12	c.A1196G	p.K399R	GAAAGAAAAAATC		36	9	0.25	43	0	0				54	19	0.35				G	93599295	A	G	93599295	3	3	52	1	0	0	0	0	1	0	0	0	9970	14	1	4	1242	4	MTF2	1	93599295	Missense_Mutation	SNP	A	TCGA-2G-AAHL-01A-11D-A42Y-10	29810070	93599295	155651326	4	3587											
SEC22B	9554	broad.mit.edu	37	chr1	145109975	145109976	+	RNA	INS	-	-	C													cacatgtgacaggaactttgINSctaaagatctacttgattgg					rs11458983	bycluster	TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	.	.	.	.	AACTTTGCTAAAG		9	3	0.33	11	0	0				0	0					C	145109976	-	C	145109975	6	5	52	0	1	1	1	0	0	0	0	0	14042	1334	46	0		0	SEC22B	1	145109975	RNA	INS	-	TCGA-2G-AAHL-01A-11D-A42Y-10	51510680	145109975	104140646	5	3588											
S100A7	6278	broad.mit.edu	37	chr1	153430403	153430403	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttatcctcattcttgtccTttttctcaaagacatcggcg	5	12	4	1	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	S100A7	NM_002963	exon3	c.A185G	p.K62R	TTGTCCTTTTTCT		222	5	0.02	249	0	0		23		11	0	0				C	153430403	T	C	153430403	3	2	52	1	0	0	0	0	1	0	0	0	13834	1609	56	4	124	4	S100A7	1	153430403	Missense_Mutation	SNP	T	TCGA-2G-AAHL-01A-11D-A42Y-10	8320428	153430403	95820218	6	3589											
OPN3	23596	mdanderson.org	37	chr1	241803223	241803223	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgtcccacacgcagcccaCggtgtcccacacccagccgt	8	22	0	0	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_014322	exon1	c.G334A	p.V112M	AGCCCACGGTGTC		51	3	0.06	66	0	0				4	0	0				T	241803223	C	T	241803223	3	4	52	1	0	0	0	0	1	0	0	0	10928	536	19	1	890	1	OPN3	1	241803223	Missense_Mutation	SNP	C	TCGA-2G-AAHL-01A-11D-A42Y-10	88372820	241803223	7447398	7	3590											
EIF5B	9669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	99992927	99992927	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggaagaggagggagaaaGtgaaggcagtgaaggtgatg	21	1	0	5	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_015904	exon10	c.G1670A	p.S557N	GAGAAAGTGAAGG		120	21	0.18	100	0	0				228	55	0.24				A	99992927	G	A	99992927	3	1	52	1	0	0	0	0	1	0	0	0	5072	1029	36	3	1708	3	EIF5B	2	99992927	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10		99992927	143206446	8	3591											
FARP2	9855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	242350476	242350476	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgccttgcaacttaagagaGacctgctggaagagcgtttg	12	8	0	3	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_014808	exon6	c.G439C	p.D147H	AAGAGAGACCTGC		52	11	0.21	78	0	0				2	1	0.5				C	242350476	G	C	242350476	3	2	52	1	0	0	0	0	1	0	0	0	5709	942	33	5	457	5	FARP2	2	242350476	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	142357549	242350476	848897	9	3592											
CPNE9	151835	mdanderson.org	37	chr3	9754683	9754683	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accatctgccacaagacagaGgttgtgaaaaacacgctgaa	9	10	1	4	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	.	.	.	.	GACAGAGGTTGTG		39	3	0.08	68	0	0				9	0	0				T	9754683	G	T	9754683	3	4	52	1	0	0	0	0	1	0	0	0	3842	991	35	3	604	3	CPNE9	3	9754683	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10		9754683	188267747	10	3593											
DCLK3	85443	mdanderson.org	37	chr3	36779310	36779310	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcttctcaaagcccgcctGgtgctctctcaggagccagc	11	15	3	0	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_033403	exon2	c.C841A	p.Q281K	CCGCCTGGTGCTC		46	3	0.07	73	0	0				5	0	0				T	36779310	G	T	36779310	3	4	52	1	0	0	0	0	1	0	0	0	4316	1357	47	3	1121	3	DCLK3	3	36779310	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	27024627	36779310	161243120	11	3594											
GPR87	53836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	151012124	151012124	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	atccaggcaaacattacacgCagacaagaaaagtgtaattt	7	8	0	2	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	GPR87,colon,carcinoma,+1,1	GPR87	NM_023915	exon3	c.G910C	p.A304P	TACACGCAGACAA		133	40	0.3	246	2	0.0081300813		1	1	0	0					G	151012124	C	G	151012124	3	3	52	1	0	0	0	0	1	0	0	0	6755	710	25	5	170	5	GPR87	3	151012124	Missense_Mutation	SNP	C	TCGA-2G-AAHL-01A-11D-A42Y-10	114232814	151012124	47010306	12	3595											
WFS1	7466	mdanderson.org	37	chr4	6293696	6293696	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccctgcagaagcagaggcgCatgctggagcgcctggtcag	15	12	1	2	rs1801213	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	WFS1,NS,carcinoma,0,1	WFS1	NM_006005	exon6	c.C684T	p.R228R	GAGGCGCATGCTG		120	3	0.03	199	0	0		0	1	13	0	0				T	6293696	C	T	6293696	2	4	52	1	0	0	0	0	0	0	0	1	17419	697	25	2		2	WFS1	4	6293696	Silent	SNP	C	TCGA-2G-AAHL-01A-11D-A42Y-10		6293696	184860580	13	3596											
KLB	152831	mdanderson.org	37	chr4	39448478	39448478	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcaacgacacctacggggCggcgcacaacctgctggtgg	15	13	0	0	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_175737	exon4	c.C2132T	p.A711V	ACGGGGCGGCGCA		16	2	0.13	22	0	0				2	0	0				T	39448478	C	T	39448478	3	4	52	1	0	0	0	0	1	0	0	0	8374	768	27	1	2146	1	KLB	4	39448478	Missense_Mutation	SNP	C	TCGA-2G-AAHL-01A-11D-A42Y-10	33154782	39448478	151705798	14	3597											
LRRC66	339977	broad.mit.edu	37	chr4	52861480	52861480	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taattcattggaatcataacGgcttgagccagagacagcgt	10	8	2	2	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	LRRC66	NM_001024611	exon4	c.C1708T	p.R570C	CATAACGGCTTGA		263	4	0.02	136	1	0.0073529412		128		2	0	0				A	52861480	G	A	52861480	3	1	52	1	0	0	0	0	1	0	0	0	9062	1116	39	1	938	1	LRRC66	4	52861480	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	13413002	52861480	138292796	15	3598											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	55599340	55599340	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gacatcaagaatgattctaaTtatgtggttaaaggaaacgt	9	4	2	2	rs121913514	alternate_allele	TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	KIT,NS,malignant_melanoma,+2,48	KIT	NM_000222	exon17	c.T2466G	p.N822K	TTCTAATTATGTG		131	102	0.78	95	0	0		2	48	62	52	0.84				G	55599340	T	G	55599340	3	3	52	1	0	0	0	0	1	0	0	0	8371	1490	52	4	2532	4	KIT	4	55599340	Missense_Mutation	SNP	T	TCGA-2G-AAHL-01A-11D-A42Y-10	2737860	55599340	135554936	16	3599											
CAMK2D	817	mdanderson.org	37	chr4	114458562	114458562	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtctgccaatttcacagctGctcccttggatttgctagct	8	12	2	0	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_172115	exon7	c.C452T	p.A151V	ACAGCTGCTCCCT		51	3	0.06	96	1	0.0104166667				0	0					A	114458562	G	A	114458562	3	1	52	1	0	0	0	0	1	0	0	0	2619	1319	46	2	1190	2	CAMK2D	4	114458562	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	58859222	114458562	76695714	17	3600											
PALLD	23022	broad.mit.edu	37	chr4	169632802	169632802	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cacttccaacactttccaccTccccctccaatcttggagac	3	19	1	1	rs370282753		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	PALLD	NM_001166108	exon10	c.T1692C	p.P564P	TCCACCTCCCCCT		214	6	0.03	323	1	0.0030959752		179		2	0	0				C	169632802	T	C	169632802	2	2	52	1	0	0	0	0	0	0	0	1	11453	1538	54	4		4	PALLD	4	169632802	Silent	SNP	T	TCGA-2G-AAHL-01A-11D-A42Y-10	55174240	169632802	21521474	18	3601											
MIER3	166968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	56219619	56219619	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgaagcatttaccgtcccaCccaaagcttctgtttcatct	5	14	3	1	rs375553373	alternate_allele	TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_152622	exon12	c.G1091C	p.G364A	GTCCCACCCAAAG		172	54	0.31	265	0	0				4	1	0.25				G	56219619	C	G	56219619	3	3	52	1	0	0	0	0	1	0	0	0	9629	507	18	5	566	5	MIER3	5	56219619	Missense_Mutation	SNP	C	TCGA-2G-AAHL-01A-11D-A42Y-10		56219619	124695641	19	3602											
PRRC1	133619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	126869374	126869374	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aagaagtaaaagttgctgctGtccgagatgccttccaggag	12	8	0	2	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_130809	exon6	c.G817C	p.V273L	GCTGCTGTCCGAG		103	22	0.21	143	0	0				16	3	0.19				C	126869374	G	C	126869374	3	2	52	1	0	0	0	0	1	0	0	0	12653	1377	48	5	835	5	PRRC1	5	126869374	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	70649755	126869374	54045886	20	3603											
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	176638277	176638277	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tctaaggttttggtttcaggAggctccacacacaattcaga	9	9	3	1	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_022455	exon5	c.A2877T	p.G959G	TTCAGGAGGCTCC		168	50	0.3	226	0	0				1	1	1				T	176638277	A	T	176638277	2	4	52	1	0	0	0	0	0	0	0	1	10716	291	11	5		5	NSD1	5	176638277	Silent	SNP	A	TCGA-2G-AAHL-01A-11D-A42Y-10	49768903	176638277	4276983	21	3604											
MUC21	394263	mdanderson.org	37	chr6	30954594	30954594	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agcacagccaccaactctgaGtccagaacgacctccaatgg	8	15	1	2	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_001010909	exon2	c.G642C	p.E214D	CTCTGAGTCCAGA		45	3	0.07	65	0	0				18	0	0				C	30954594	G	C	30954594	3	2	52	1	0	0	0	0	1	0	0	0	10024	1020	36	5	648	5	MUC21	6	30954594	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10		30954594	140160473	22	3605											
TNXB	7148	broad.mit.edu	37	chr6	32012870	32012870	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagggggtgctgggctccaGgcctgagatgaggatcttgc	18	8	1	2	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	TNXB	NM_019105	exon32	c.C10834A	p.L3612M	GCTCCAGGCCTGA		301	5	0.02	297	1	0.0033670034		553		4	0	0				T	32012870	G	T	32012870	3	4	52	1	0	0	0	0	1	0	0	0	16405	991	35	3	3931	3	TNXB	6	32012870	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	1058276	32012870	139102197	23	3606											
RGL2	5863	mdanderson.org	37	chr6	33263293	33263293	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctctctcacctctgccaCgcggatccacttctccagga	6	18	4	0	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	RGL2,NS,carcinoma,0,1	RGL2	NM_004761	exon7	c.G1012T	p.V338L	CTGCCACGCGGAT		50	3	0.06	60	0	0		0	1	16	0	0				A	33263293	C	A	33263293	3	1	52	1	0	0	0	0	1	0	0	0	13328	536	19	1	1369	1	RGL2	6	33263293	Missense_Mutation	SNP	C	TCGA-2G-AAHL-01A-11D-A42Y-10	1250423	33263293	137851774	24	3607											
TOMM6	100188893	mdanderson.org	37	chr6	41756999	41756999	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actaaatttgggactctttgCtgcgggagtttggctggcca	13	8	1	0	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_001134493	exon2	c.C158T	p.A53V	TCTTTGCTGCGGG		74	4	0.05	72	0	0				2481	2	0				T	41756999	C	T	41756999	3	4	52	1	0	0	0	0	1	0	0	0	16420	797	28	2	164	2	TOMM6	6	41756999	Missense_Mutation	SNP	C	TCGA-2G-AAHL-01A-11D-A42Y-10	8493706	41756999	129358068	25	3608											
GRM1	2911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	146720361	146720361	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aaccctgatcatcatggaacCccctatgcccattctgtcct	5	16	3	1	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	GRM1,leg,malignant_melanoma,-1,1	GRM1	NM_000838	exon8	c.C2186G	p.P729R	TGGAACCCCCTAT		167	22	0.13	221	0	0		-1	1	0	0					G	146720361	C	G	146720361	3	3	52	1	0	0	0	0	1	0	0	0	6836	623	22	5	2212	5	GRM1	6	146720361	Missense_Mutation	SNP	C	TCGA-2G-AAHL-01A-11D-A42Y-10	104963362	146720361	24394706	26	3609											
GATAD1	57798	mdanderson.org	37	chr7	92077209	92077209	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggagggactgggggcagcGgcggcggcggcttcggcgcg	23	11	0	0	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_021167	exon1	c.G166A	p.G56S	GGCAGCGGCGGCG		23	3	0.13	20	0	0				0	0					A	92077209	G	A	92077209	3	1	52	1	0	0	0	0	1	0	0	0	6298	1116	39	1	168	1	GATAD1	7	92077209	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10		92077209	67061454	27	3610											
COL1A2	1278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	94042436	94042436	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gataaaggtcatgctggtctTgctggtgctcgggtaggtgc	16	7	2	0	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_000089	exon26	c.T1545C	p.L515L	TGGTCTTGCTGGT		238	53	0.22	239	0	0				91	4	0.04				C	94042436	T	C	94042436	2	2	52	1	0	0	0	0	0	0	0	1	3701	1799	63	4		4	COL1A2	7	94042436	Silent	SNP	T	TCGA-2G-AAHL-01A-11D-A42Y-10	1965227	94042436	65096227	28	3611											
ABCF2	10061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	150921079	150921079	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccgctctgtgtcgacttcCatcacacaatgcaagggtgt	10	13	2	0	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_005692	exon4	c.G489A	p.M163I	GACTTCCATCACA		94	14	0.15	101	0	0				80	25	0.31				T	150921079	C	T	150921079	3	4	52	1	0	0	0	0	1	0	0	0	66	594	21	3	1471	3	ABCF2	7	150921079	Missense_Mutation	SNP	C	TCGA-2G-AAHL-01A-11D-A42Y-10	56878643	150921079	8217584	29	3612											
LEPROTL1	23484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	29963269	29963269	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttatttccatagattgagtGgggagcttgtgcacttgttc	11	7	0	2	rs371805932		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_015344	exon4	c.G287T	p.W96L	TTGAGTGGGGAGC		88	9	0.1	89	0	0				140	27	0.19				T	29963269	G	T	29963269	3	4	52	1	0	0	0	0	1	0	0	0	8771	1357	47	3	301	3	LEPROTL1	8	29963269	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10		29963269	116400753	30	3613											
BAI1	575	mdanderson.org	37	chr8	143560839	143560839	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accggcagtgcggcacccagCggtgtcccggtgaggcccct	15	16	0	1	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_001702	exon7	c.C1717T	p.R573W	ACCCAGCGGTGTC		24	2	0.08	34	0	0				0	0					T	143560839	C	T	143560839	3	4	52	1	0	0	0	0	1	0	0	0	1296	759	27	1	1743	1	BAI1	8	143560839	Missense_Mutation	SNP	C	TCGA-2G-AAHL-01A-11D-A42Y-10	113597570	143560839	2803183	31	3614											
OPLAH	26873	hgsc.bcm.edu	37	chr8	145111362	145111362	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accactgcggccggtgccccGcactcgcacatcgtccacga	10	19	0	0	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_017570	exon14	c.C1909A	p.R637R	TGCCCCGCACTCG		86	4	0.05	92	0	0				5	0	0				T	145111362	G	T	145111362	2	4	52	1	0	0	0	0	0	0	0	1	10923	1086	38	1		1	OPLAH	8	145111362	Silent	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	1550523	145111362	1252660	32	3615											
GLIS3	169792	hgsc.bcm.edu	37	chr9	3829449	3829449	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacaattctctgggaatcGgggtagtgtgggggacagaa	17	6	1	1	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	GLIS3_ENST00000381971,NS,carcinoma,0,2	GLIS3_ENST00000381971	NM_001042413	exon10	c.C2517A	p.P839P	GGAATCGGGGTAG		86	4	0.05	131	0	0		0	2	0	0					T	3829449	G	T	3829449	2	4	52	1	0	0	0	0	0	0	0	1	6488	1103	39	1		1	GLIS3	9	3829449	Silent	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10		3829449	137383982	33	3616											
PIGO	84720	mdanderson.org	37	chr9	35091711	35091711	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acgggggggagcctcatctgCccccgacgccaatgcccagt	13	16	2	0	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	PIGO,face,carcinoma,+1,1	PIGO	NM_032634	exon7	c.G2173A	p.A725T	CATCTGCCCCCGA		24	3	0.13	22	0	0		1	1	22	0	0				T	35091711	C	T	35091711	3	4	52	1	0	0	0	0	1	0	0	0	11941	739	26	2	1116	2	PIGO	9	35091711	Missense_Mutation	SNP	C	TCGA-2G-AAHL-01A-11D-A42Y-10	31262262	35091711	106121720	34	3617											
COL15A1	1306	mdanderson.org	37	chr9	101807052	101807052	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catggagccccaggaccaatGgtaagtcagagcgtctctca	11	12	3	1	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_001855	exon26	c.G2679T	p.M893I	ACCAATGGTAAGT		46	3	0.07	89	0	0				10	0	0				T	101807052	G	T	101807052	3	4	52	1	0	0	0	0	1	0	0	0	3695	1362	47	3	2781	3	COL15A1	9	101807052	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	66715341	101807052	39406379	35	3618											
PIP4K2A	5305	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	22830852	22830852	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggttcccaccgggtgggtgCcatcgctctcgccctcctcc	12	18	1	0	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_005028	exon8	c.G917A	p.G306D	TGGGTGCCATCGC		126	6	0.05	156	0	0				45	0	0				T	22830852	C	T	22830852	3	4	52	1	0	0	0	0	1	0	0	0	11983	739	26	2	315	2	PIP4K2A	10	22830852	Missense_Mutation	SNP	C	TCGA-2G-AAHL-01A-11D-A42Y-10		22830852	112703895	36	3619											
CHST3	9469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	73768085	73768085	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaagtggcgcttcagcatGcccttcaagctggcccaggt	13	12	2	1	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_004273	exon3	c.G1296A	p.M432I	CAGCATGCCCTTC		68	18	0.26	72	0	0				5	2	0.4				A	73768085	G	A	73768085	3	1	52	1	0	0	0	0	1	0	0	0	3427	1319	46	2	1302	2	CHST3	10	73768085	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	50937233	73768085	61766662	37	3620											
DNHD1	144132	hgsc.bcm.edu;mdanderson.org	37	chr11	6569159	6569159	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagcagctttctaaaccGgtcccaggttgacagtgacg	10	10	1	2	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	DNHD1,colon,carcinoma,0,2	DNHD1	NM_144666	exon22	c.G6794T	p.R2265L	TAAACCGGTCCCA		60	3	0.05	66	0	0		0	2	15	0	0				T	6569159	G	T	6569159	3	4	52	1	0	0	0	0	1	0	0	0	4695	1116	39	1	6881	1	DNHD1	11	6569159	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10		6569159	128437357	38	3621											
PRDM11	56981	mdanderson.org	37	chr11	45203849	45203849	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagcccaagaaactgaagGggaagcgcgacctcatcgtg	13	10	1	3	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_001256695	exon3	c.G172T	p.G58W	CTGAAGGGGAAGC		44	3	0.07	106	0	0				0	0					T	45203849	G	T	45203849	3	4	52	1	0	0	0	0	1	0	0	0	12503	1232	43	3	284	3	PRDM11	11	45203849	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	38634690	45203849	89802667	39	3622											
RCOR2	283248	bcgsc.ca	37	chr11	63682723	63682723	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttgttgctgtagcgtgcGgggctctctgaaaggccgag	15	10	1	1	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	RCOR2	NM_173587	exon3	c.C192A	p.P64P	GCGTGCGGGGCTC		47	4	0.09	91	0	0		43		52	0	0				T	63682723	G	T	63682723	2	4	52	1	0	0	0	0	0	0	0	1	13234	1103	39	1		1	RCOR2	11	63682723	Silent	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	18478874	63682723	71323793	40	3623											
TYR	7299	mdanderson.org	37	chr11	88961033	88961033	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatagcggatgcctctcaaaGcagcatgcacaatgccttgc	10	12	1	0	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_000372	exon3	c.G1079T	p.S360I	CTCAAAGCAGCAT		42	3	0.07	100	0	0				0	0					T	88961033	G	T	88961033	3	4	52	1	0	0	0	0	1	0	0	0	16874	971	34	2	1089	2	TYR	11	88961033	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	25278310	88961033	46045483	41	3624											
RNF26	79102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	119206597	119206597	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcaccctgaggctggctacCcaggcactcagccagctcca	9	17	2	1	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_032015	exon1	c.C765G	p.T255T	GGCTACCCAGGCA		31	8	0.26	45	0	0				55	18	0.33				G	119206597	C	G	119206597	2	3	52	1	0	0	0	0	0	0	0	1	13537	610	22	5		5	RNF26	11	119206597	Silent	SNP	C	TCGA-2G-AAHL-01A-11D-A42Y-10	30245564	119206597	15799919	42	3625											
GRAMD1B	57476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	123489463	123489463	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	actctggatgttggaatacaCcacgcagaccctcactgcct	8	14	2	1	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_020716	exon18	c.C1964G	p.T655S	AATACACCACGCA		72	21	0.29	137	0	0				4	0	0				G	123489463	C	G	123489463	3	3	52	1	0	0	0	0	1	0	0	0	6788	507	18	5	2034	5	GRAMD1B	11	123489463	Missense_Mutation	SNP	C	TCGA-2G-AAHL-01A-11D-A42Y-10	4282866	123489463	11517053	43	3626											
RBP5	0	broad.mit.edu	37	chr12	7281645	7281674	+	RNA	DEL	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	-													gttgcgcctgaccttggcttTtcctgaggaaggaacctgga					novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	RBP5	.	.	.	.	TGGCTTTTCCTGA		13	4	0.31	6	0	0		20		5	0	0				-	7281674	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	-	7281645	6	5	52	0	1	1	0	1	0	0	0	0	13210	1856	64	0		0	RBP5	12	7281645	RNA	DEL	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TCGA-2G-AAHL-01A-11D-A42Y-10		7281645	126570250	44	3627											
NACA	4666	broad.mit.edu	37	chr12	57111378	57111378	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagggaggagttgcagctggAggagtgggggcccctttggg	22	6	0	0	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	NACA_ENST00000454682,NS,malignant_melanoma,0,1	NACA	.	.	.	.	AGCTGGAGGAGTG		116	11	0.09	141	3	0.0212765957		131	1	0	0					G	57111378	A	G	57111378	2	3	52	1	0	0	0	0	0	0	0	1	10180	291	11	4		4	NACA	12	57111378	Silent	SNP	A	TCGA-2G-AAHL-01A-11D-A42Y-10	49829733	57111378	76740517	45	3628											
NUP107	57122	mdanderson.org	37	chr12	69135740	69135740	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tagcagatatggtatcctctGagcgccacaaactgtacctg	9	11	1	2	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_020401	exon27	c.G2650T	p.E884X	TCCTCTGAGCGCC		81	5	0.06	108	0	0				332	1	0				T	69135740	G	T	69135740	4	4	52	1	0	0	0	0	0	1	0	0	10800	1291	45	3	2756	3	NUP107	12	69135740	Nonsense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	12024362	69135740	64716155	46	3629											
ZFC3H1	196441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr12	72028578	72028578	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atcattttctttttcagattTtggaggtactttcggttttg	8	5	3	1	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_144982	exon11	c.A2266T	p.K756X	CAGATTTTGGAGG		48	11	0.23	59	0	0				0	0					A	72028578	T	A	72028578	4	1	52	1	0	0	0	0	0	1	0	0	17690	1850	64	5	3803	5	ZFC3H1	12	72028578	Nonsense_Mutation	SNP	T	TCGA-2G-AAHL-01A-11D-A42Y-10	2892838	72028578	61823317	47	3630											
SETD3	84193	mdanderson.org	37	chr14	99876548	99876548	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caagagcgaaggaatcttctGgtgtctgaagaatagcaggg	14	6	3	3	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_199123	exon9	c.C854A	p.P285Q	TCTTCTGGTGTCT		53	3	0.06	73	0	0				0	0					T	99876548	G	T	99876548	3	4	52	1	0	0	0	0	1	0	0	0	14185	1348	47	3	996	3	SETD3	14	99876548	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10		99876548	7472992	48	3631											
AHNAK2	113146	broad.mit.edu	37	chr14	105414109	105414109	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggtgccctttgaggccgGctccctccggcacagggccc	14	17	0	1	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	AHNAK2	NM_138420	exon7	c.C7679T	p.A2560V	AGGCCGGCTCCCT		175	6	0.03	185	0	0		719		0	0					A	105414109	G	A	105414109	3	1	52	1	0	0	0	0	1	0	0	0	412	1203	42	2	9712	2	AHNAK2	14	105414109	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	5537561	105414109	1935431	49	3632											
MAN2C1	4123	broad.mit.edu;mdanderson.org	37	chr15	75654243	75654243	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaaagaagttctggccctGcaaaaactgcctcaccatgg	9	12	2	2	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	MAN2C1	NM_001256494	exon9	c.C1054T	p.Q352X	GGCCCTGCAAAAA		82	4	0.05	75	0	0		76		13	0	0				A	75654243	G	A	75654243	4	1	52	1	0	0	0	0	0	1	0	0	9267	1328	46	2	2140	2	MAN2C1	15	75654243	Nonsense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10		75654243	26877149	50	3633											
ABCA3	21	mdanderson.org	37	chr16	2338251	2338251	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcaccaggacctgtgccGccaccattttccactcgcgc	10	17	0	0	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_001089	exon21	c.C2780A	p.A927E	TGTGCCGCCACCA		38	3	0.08	32	0	0				5	0	0				T	2338251	G	T	2338251	3	4	52	1	0	0	0	0	1	0	0	0	33	1087	38	1	2386	1	ABCA3	16	2338251	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10		2338251	88016502	51	3634											
ZNF764	92595	mdanderson.org	37	chr16	30566959	30566959	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcggcggccacagtcggcGcagccatagggtttctcgcc	14	14	1	0	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_033410	exon3	c.C783A	p.C261X	GTCGGCGCAGCCA		17	2	0.12	17	0	0				7	0	0				T	30566959	G	T	30566959	4	4	52	1	0	0	0	0	0	1	0	0	18187	1079	38	1	447	1	ZNF764	16	30566959	Nonsense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	28228708	30566959	59787794	52	3635											
ZNF629	23361	mdanderson.org	37	chr16	30794398	30794398	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tggatgcgctggtggttgatGaggttggagctgacgctgaa	18	5	0	4	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_001080417	exon3	c.C1251A	p.L417L	GTTGATGAGGTTG		43	3	0.07	56	0	0				0	0					T	30794398	G	T	30794398	2	4	52	1	0	0	0	0	0	0	0	1	18109	1277	45	3		3	ZNF629	16	30794398	Silent	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	227439	30794398	59560355	53	3636											
ZNF423	23090	mdanderson.org	37	chr16	49671203	49671203	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atggagttggcgcttgctgaGagccgctgccgcttcgggga	17	10	0	1	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_015069	exon4	c.C1860A	p.L620L	TGCTGAGAGCCGC		68	5	0.07	113	0	0				5	0	0				T	49671203	G	T	49671203	2	4	52	1	0	0	0	0	0	0	0	1	17954	929	33	3		3	ZNF423	16	49671203	Silent	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	18876805	49671203	40683550	54	3637											
COX4I1	1327	broad.mit.edu	37	chr16	85838605	85838605	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggatcggcgtgaccaccccTtgccggaggtggcccatgtc	14	14	0	1	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	COX4I1	NM_001861	exon3	c.T136C	p.L46L	CACCCCTTGCCGG		93	15	0.16	123	17	0.1382113821		20		2211	66	0.03				C	85838605	T	C	85838605	2	2	52	1	0	0	0	0	0	0	0	1	3792	1606	56	4		4	COX4I1	16	85838605	Silent	SNP	T	TCGA-2G-AAHL-01A-11D-A42Y-10	36167402	85838605	4516148	55	3638											
ALOX12B	242	mdanderson.org	37	chr17	7979514	7979514	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccagtgcattccacaccGccaagctgtcatcgcggtag	9	15	2	0	rs141010860	alternate_allele	TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_001139	exon11	c.C1511A	p.A504E	CACACCGCCAAGC		40	3	0.08	67	0	0				1	0	0				T	7979514	G	T	7979514	3	4	52	1	0	0	0	0	1	0	0	0	533	1087	38	1	614	1	ALOX12B	17	7979514	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10		7979514	73215696	56	3639											
RAI1	10743	mdanderson.org	37	chr17	17701342	17701342	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcctctgccaaaacccgGccaacttcaaggaccttggg	10	15	2	0	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_030665	exon3	c.G5080T	p.A1694S	AACCCGGCCAACT		67	5	0.07	102	0	0				36	0	0				T	17701342	G	T	17701342	3	4	52	1	0	0	0	0	1	0	0	0	13058	1203	42	2	5082	2	RAI1	17	17701342	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	9721828	17701342	63493868	57	3640											
GAS2L2	246176	broad.mit.edu	37	chr17	34077157	34077157	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggcgctggcggcgaggggTcgggcgggggcagggccagc	26	10	0	0	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	GAS2L2,right_upper_lobe,carcinoma,0,2	GAS2L2	NM_139285	exon2	c.A566C	p.D189A	GAGGGGTCGGGCG		80	30	0.38	83	29	0.3493975904		94	2	0	0					G	34077157	T	G	34077157	3	3	52	1	0	0	0	0	1	0	0	0	6286	1667	58	4	2096	4	GAS2L2	17	34077157	Missense_Mutation	SNP	T	TCGA-2G-AAHL-01A-11D-A42Y-10	16375815	34077157	47118053	58	3641											
SMARCE1	6605	mdanderson.org	37	chr17	38798746	38798746	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgggttccctcccagcctGtagttgttgtaggcgagatg	13	12	0	1	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_003079	exon4	c.C117A	p.Y39X	CAGCCTGTAGTTG		46	3	0.07	73	0	0				128	0	0				T	38798746	G	T	38798746	4	4	52	1	0	0	0	0	0	1	0	0	14833	1372	48	3	1150	3	SMARCE1	17	38798746	Nonsense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	4721589	38798746	42396464	59	3642											
SP6	80320	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	45924781	45924781	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagccgcctcctccttggCgccctcgtgggttttcatgt	10	17	1	0	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	SP6	NM_001258248	exon2	c.G1015A	p.A339T	CCTTGGCGCCCTC		120	8	0.07	135	0	0		26		2	0	0				T	45924781	C	T	45924781	3	4	52	1	0	0	0	0	1	0	0	0	15021	768	27	1	119	1	SP6	17	45924781	Missense_Mutation	SNP	C	TCGA-2G-AAHL-01A-11D-A42Y-10	7126035	45924781	35270429	60	3643											
CARD14	79092	mdanderson.org	37	chr17	78164655	78164655	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacagggagaaggtgaatgCgctgcaggcccaggtgtgcg	17	9	0	2	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_024110	exon7	c.C1046T	p.A349V	TGAATGCGCTGCA		35	3	0.09	37	0	0				0	0					T	78164655	C	T	78164655	3	4	52	1	0	0	0	0	1	0	0	0	2664	768	27	1	1068	1	CARD14	17	78164655	Missense_Mutation	SNP	C	TCGA-2G-AAHL-01A-11D-A42Y-10	32239874	78164655	3030555	61	3644											
CCDC57	284001	mdanderson.org	37	chr17	80086422	80086422	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctgtgctgagcggggctGgtgctttcccaagtgtctgg	15	11	1	1	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_198082	exon15	c.C2293A	p.Q765K	GGGGCTGGTGCTT		48	3	0.06	81	0	0				12	0	0				T	80086422	G	T	80086422	3	4	52	1	0	0	0	0	1	0	0	0	2847	1357	47	3	466	3	CCDC57	17	80086422	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	1921767	80086422	1108788	62	3645											
MIER2	54531	broad.mit.edu	37	chr19	327235	327235	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctcttcttcccctgaaaGcaaatccttcgctatttgtt	4	13	2	1	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	MIER2	NM_017550	exon5	c.C391T	p.L131F	CTGAAAGCAAATC		92	15	0.16	87	6	0.0689655172		51		90	0	0				A	327235	G	A	327235	3	1	52	1	0	0	0	0	1	0	0	0	9628	971	34	2	1286	2	MIER2	19	327235	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10		327235	58801748	63	3646											
S1PR2	9294	mdanderson.org	37	chr19	10334950	10334950	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcggaccacgcagtagatgCgcacgtacagggccacgatg	14	12	0	1	rs141230424	bycluster;by1000genomes	TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_004230	exon2	c.G632A	p.R211H	TAGATGCGCACGT		43	3	0.07	52	0	0	0			1	0	0				T	10334950	C	T	10334950	3	4	52	1	0	0	0	0	1	0	0	0	13845	768	27	1	433	1	S1PR2	19	10334950	Missense_Mutation	SNP	C	TCGA-2G-AAHL-01A-11D-A42Y-10	10007715	10334950	48794033	64	3647											
SMARCA4	6597	ucsc.edu	37	chr19	11123647	11123647	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaggtttggagtggctggTgtccctgtacaacaacaacc	11	10	0	0	rs201128299	bycluster;byfrequency	TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	SMARCA4_ENST00000358026,NS,carcinoma,-1,2	SMARCA4	NM_003072	exon16	c.T2297G	p.V766G	GGCTGGTGTCCCT		159	14	0.09	150	10	0.0666666667		502	2	94	21	0.22				G	11123647	T	G	11123647	3	3	52	1	0	0	0	0	1	0	0	0	14823	1696	59	4	2355	4	SMARCA4	19	11123647	Missense_Mutation	SNP	T	TCGA-2G-AAHL-01A-11D-A42Y-10	788697	11123647	48005336	65	3648											
NACC1	112939	mdanderson.org	37	chr19	13246749	13246749	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcgggagcagggcagccagCcggtggggtggcagcagcag	21	10	0	0	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_052876	exon2	c.C728T	p.A243V	AGCCAGCCGGTGG		22	2	0.09	42	0	0				18	0	0				T	13246749	C	T	13246749	3	4	52	1	0	0	0	0	1	0	0	0	10182	739	26	2	730	2	NACC1	19	13246749	Missense_Mutation	SNP	C	TCGA-2G-AAHL-01A-11D-A42Y-10	2123102	13246749	45882234	66	3649											
SIRPG	55423	broad.mit.edu	37	chr20	1615980	1615980	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agggcaaggcgtttgctgacCgccagctgcccatcatgctt	12	13	1	1	rs147655438		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	SIRPG,NS,carcinoma,0,1	SIRPG	NM_018556	exon4	c.G1014A	p.A338A	GCTGACCGCCAGC		99	4	0.04	155	0	0		61	1	14	0	0				T	1615980	C	T	1615980	2	4	52	1	0	0	0	0	0	0	0	1	14390	639	23	1		1	SIRPG	20	1615980	Silent	SNP	C	TCGA-2G-AAHL-01A-11D-A42Y-10		1615980	61409540	67	3650											
FOXA2	3170	broad.mit.edu	37	chr20	22562677	22562677	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aggtccattttgtggggttgGtggtggtggtggctgtggtg	21	3	0	0	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	FOXA2	NM_021784	exon2	c.C1203G	p.H401Q	GGGTTGGTGGTGG		166	3	0.02	223	1	0.0044843049		48		0	0					C	22562677	G	C	22562677	3	2	52	1	0	0	0	0	1	0	0	0	6022	1252	44	5	192	5	FOXA2	20	22562677	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	20946697	22562677	40462843	68	3651											
RALGAPB	57148	broad.mit.edu	37	chr20	37195815	37195815	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgccaggaattctgaaacaGccatccctgacacttgagct	8	12	1	3	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	RALGAPB	NM_020336	exon26	c.G3894T	p.Q1298H	GAAACAGCCATCC		99	3	0.03	145	0	0		134		43	0	0				T	37195815	G	T	37195815	3	4	52	1	0	0	0	0	1	0	0	0	13066	962	34	2	3992	2	RALGAPB	20	37195815	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	14633138	37195815	25829705	69	3652											
ADAMTS5	11096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	28302337	28302337	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcacacacttcccccggacgCagacggaattactgtacagc	8	15	1	1	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	ADAMTS5,colon,carcinoma,+1,2	ADAMTS5	NM_007038	exon7	c.G2093C	p.C698S	CGGACGCAGACGG		135	48	0.36	157	0	0		1	2	11	4	0.36				G	28302337	C	G	28302337	3	3	52	1	0	0	0	0	1	0	0	0	268	710	25	5	707	5	ADAMTS5	21	28302337	Missense_Mutation	SNP	C	TCGA-2G-AAHL-01A-11D-A42Y-10		28302337	19827558	70	3653											
HLCS	3141	hgsc.bcm.edu	37	chr21	38269383	38269383	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gccggattttatttctccctCggagtccacatgtttcccaa	7	13	1	0	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_000411	exon7	c.G1228C	p.E410Q	CTCCCTCGGAGTC		100	4	0.04	102	0	0				16	0	0				G	38269383	C	G	38269383	3	3	52	1	0	0	0	0	1	0	0	0	7253	893	31	5	976	5	HLCS	21	38269383	Missense_Mutation	SNP	C	TCGA-2G-AAHL-01A-11D-A42Y-10	9967046	38269383	9860512	71	3654											
KRTAP10-2	386679	mdanderson.org	37	chr21	45971147	45971147	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagcctgattggcaggcGctgggctcacaggccgcctg	16	13	1	1	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_198693	exon1	c.C195T	p.S65S	GCAGGCGCTGGGC		39	3	0.08	36	0	0				0	0					A	45971147	G	A	45971147	2	1	52	1	0	0	0	0	0	0	0	1	8551	1078	38	1		1	KRTAP10-2	21	45971147	Silent	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10	7701764	45971147	2158748	72	3655											
WWC3	55841	mdanderson.org	37	chrX	10098006	10098006	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgccttcaggagttggcaaGcggactcggtggatagcggc	16	11	1	0	novel		TCGA-2G-AAHL-01A-11D-A42Y-10	TCGA-2G-AAHL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1b32e51f-53fa-4dbd-b41f-a2c7bf173d75	fee4df93-5a3c-4c18-92e3-8306991eaaa2	.	.	NM_015691	exon18	c.G2443T	p.A815S	TGGCAAGCGGACT		40	3	0.08	53	0	0				0	0					T	10098006	G	T	10098006	3	4	52	1	0	0	0	0	1	0	0	0	17472	971	34	2	2509	2	WWC3	23	10098006	Missense_Mutation	SNP	G	TCGA-2G-AAHL-01A-11D-A42Y-10		10098006	145172554	73	3656											
CLCNKB	1188	broad.mit.edu	37	chr1	16383402	16383402	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacctgacaaatccgccagcCccaaagtgagccggcccagc	9	17	0	2	rs6698427	bycluster	TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	CLCNKB	NM_000085	exon20	c.C2055T	p.A685A	GCCAGCCCCAAAG		372	5	0.01	512	1	0.001953125		50		2	0	0				T	16383402	C	T	16383402	2	4	53	1	0	0	0	0	0	0	0	1	3493	610	22	3		3	CLCNKB	1	16383402	Silent	SNP	C	TCGA-2G-AAHN-01A-11D-A42Y-10		16383402	232867219	1	3657											
SERINC2	347735	broad.mit.edu	37	chr1	31897662	31897662	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cggccttcttcttctttttcAccctgctcatgctctgcgtg	7	15	6	0	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	SERINC2	NM_001199038	exon4	c.A361C	p.T121P	TTTTTCACCCTGC		99	20	0.2	161	36	0.2236024845		44		11	1	0.09				C	31897662	A	C	31897662	3	2	53	1	0	0	0	0	1	0	0	0	14133	159	6	4	344	4	SERINC2	1	31897662	Missense_Mutation	SNP	A	TCGA-2G-AAHN-01A-11D-A42Y-10	15514260	31897662	217352959	2	3658											
SFPQ	6421	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	35656135	35656135	+	Frame_Shift_Del	DEL	G	G	-													tcttctgggcaagtttttcaGgaagaccatcttcatcatct					novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	SFPQ	NM_005066	exon4	c.1380delT	p.P460fs	TTTTCAGGAAGAC		356	43	0.12	395	0	0		51		456	0	0				-	35656135	G	-	35656135	7	5	53	1	0	1	0	1	0	0	0	0	14213	1000	35	0	772	0	SFPQ	1	35656135	Frame_Shift_Del	DEL	G	TCGA-2G-AAHN-01A-11D-A42Y-10	3758473	35656135	213594486	3	3659											
ARTN	9048	mdanderson.org	37	chr1	44401810	44401810	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctggctctgctgagcagcGtcgcagaggcctccctgggc	14	15	2	2	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001136215	exon3	c.G130A	p.V44I	AGCAGCGTCGCAG		17	3	0.18	16	0	0				1	0	0				A	44401810	G	A	44401810	3	1	53	1	0	0	0	0	1	0	0	0	1000	1145	40	1	223	1	ARTN	1	44401810	Missense_Mutation	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10	8745675	44401810	204848811	4	3660											
SLC6A17	388662	mdanderson.org	37	chr1	110740797	110740797	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccctgtggtgttcgtcctgCggcacttccacctgctctct	9	16	1	0	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001010898	exon12	c.C1915T	p.R639W	GTCCTGCGGCACT		60	4	0.07	90	0	0				3	0	0				T	110740797	C	T	110740797	3	4	53	1	0	0	0	0	1	0	0	0	14734	759	27	1	1957	1	SLC6A17	1	110740797	Missense_Mutation	SNP	C	TCGA-2G-AAHN-01A-11D-A42Y-10	66338987	110740797	138509824	5	3661											
CSDE1	7812	hgsc.bcm.edu;bcgsc.ca	37	chr1	115262299	115262299	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtagctcaatgccatccTgaacttctttcacatggaaa	6	12	3	1	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	CSDE1,face,carcinoma,-1,1	CSDE1	NM_001242891	exon19	c.A2255G	p.Q752R	CCATCCTGAACTT		106	6	0.06	152	0	0		-1	1	1130	0	0				C	115262299	T	C	115262299	3	2	53	1	0	0	0	0	1	0	0	0	3954	1580	55	4	291	4	CSDE1	1	115262299	Missense_Mutation	SNP	T	TCGA-2G-AAHN-01A-11D-A42Y-10	4521502	115262299	133988322	6	3662											
CELF3	11189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr1	151679178	151679178	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catccccgcgtaggcctgctGcagggggtccacgggggccg	17	15	0	0	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_007185	exon9	c.C955T	p.Q319X	CCTGCTGCAGGGG		94	12	0.13	126	0	0				0	0					A	151679178	G	A	151679178	4	1	53	1	0	0	0	0	0	1	0	0	3239	1328	46	2	458	2	CELF3	1	151679178	Nonsense_Mutation	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10	36416879	151679178	97571443	7	3663											
VANGL2	57216	mdanderson.org	37	chr1	160388802	160388802	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctgtaggatgacaactGgggggaaacgacgacagtag	15	8	0	1	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_020335	exon4	c.G203T	p.W68L	ACAACTGGGGGGA		86	4	0.05	114	0	0				2	0	0				T	160388802	G	T	160388802	3	4	53	1	0	0	0	0	1	0	0	0	17179	1357	47	3	213	3	VANGL2	1	160388802	Missense_Mutation	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10	8709624	160388802	88861819	8	3664											
FMN2	56776	mdanderson.org	37	chr1	240256436	240256436	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcccccgtgcgaggggctGgggacacggatgaggagggt	21	9	0	1	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_020066	exon1	c.G1027T	p.G343W	GGGGCTGGGGACA		15	2	0.13	29	0	0				7	0	0				T	240256436	G	T	240256436	3	4	53	1	0	0	0	0	1	0	0	0	5982	1348	47	3	1029	3	FMN2	1	240256436	Missense_Mutation	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10	79867634	240256436	8994185	9	3665											
FAM110C	642273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	45630	45630	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgctgccggaggtggcgacGctcacgctgcgcaccttgag	15	15	1	1	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001077710	exon1	c.C756T	p.S252S	GGCGACGCTCACG		66	11	0.17	101	0	0				0	0					A	45630	G	A	45630	2	1	53	1	0	0	0	0	0	0	0	1	5429	1078	38	1		1	FAM110C	2	45630	Silent	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10		45630	243153743	10	3666											
GDF7	151449	broad.mit.edu	37	chr2	20870840	20870840	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgcagggcagcggcgggggCgcgggccggggccacgggcg	25	13	0	0	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	GDF7	NM_182828	exon2	c.C1008G	p.G336G	CGGGGGCGCGGGC		31	8	0.26	27	3	0.1111111111		21		0	0					G	20870840	C	G	20870840	2	3	53	1	0	0	0	0	0	0	0	1	6359	755	27	5		5	GDF7	2	20870840	Silent	SNP	C	TCGA-2G-AAHN-01A-11D-A42Y-10	20825210	20870840	222328533	11	3667											
GPAT2	150763	mdanderson.org	37	chr2	96690240	96690240	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgtgccaggtgtgtgaggCctgggccaggctgcggcacc	18	11	0	1	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_207328	exon15	c.G1604A	p.G535D	GTGAGGCCTGGGC		41	3	0.07	63	0	0				12	0	0				T	96690240	C	T	96690240	3	4	53	1	0	0	0	0	1	0	0	0	6628	739	26	2	815	2	GPAT2	2	96690240	Missense_Mutation	SNP	C	TCGA-2G-AAHN-01A-11D-A42Y-10	75819400	96690240	146509133	12	3668											
SCN7A	6332	broad.mit.edu	37	chr2	167328934	167328934	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttacaagtatttcaaatgtGtaaattccaagcaaagtatt	5	5	1	0	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	SCN7A	NM_002976	exon5	c.C465T	p.Y155Y	AAATGTGTAAATT		449	10	0.02	626	3	0.0047923323		410		0	0					A	167328934	G	A	167328934	2	1	53	1	0	0	0	0	0	0	0	1	13976	1372	48	3		3	SCN7A	2	167328934	Silent	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10	70638694	167328934	75870439	13	3669											
SMARCAL1	50485	broad.mit.edu	37	chr2	217297481	217297481	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gccgcctgctgctcgctgacGacatgggcctggggaagacc	15	14	0	2	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	SMARCAL1	NM_014140	exon8	c.G1375T	p.D459Y	GCTGACGACATGG		172	5	0.03	239	0	0		93		69	0	0				T	217297481	G	T	217297481	3	4	53	1	0	0	0	0	1	0	0	0	14826	1058	37	1	1397	1	SMARCAL1	2	217297481	Missense_Mutation	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10	49968547	217297481	25901892	14	3670											
VIL1	7429	mdanderson.org	37	chr2	219289058	219289058	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcttcttcgatggtgactGctacatcatcctggctgtga	10	10	2	2	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_007127	exon3	c.G134A	p.C45Y	GTGACTGCTACAT		54	3	0.06	57	0	0				0	0					A	219289058	G	A	219289058	3	1	53	1	0	0	0	0	1	0	0	0	17223	1319	46	2	140	2	VIL1	2	219289058	Missense_Mutation	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10	1991577	219289058	23910315	15	3671											
STAC	6769	mdanderson.org	37	chr3	36587768	36587768	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcatcccccttgatgtacTagaaaacatctgattgctgg	7	12	2	3	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_003149	exon11	c.T1196C	p.L399P	ATGTACTAGAAAA		58	3	0.05	108	0	0				1	0	0				C	36587768	T	C	36587768	3	2	53	1	0	0	0	0	1	0	0	0	15294	1522	53	4	1238	4	STAC	3	36587768	Missense_Mutation	SNP	T	TCGA-2G-AAHN-01A-11D-A42Y-10		36587768	161434662	16	3672											
TWF2	11344	mdanderson.org	37	chr3	52264021	52264021	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcggggcacccgggagggCagctgggccacatccgtggg	18	13	1	0	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_007284	exon7	c.G675A	p.L225L	GGAGGGCAGCTGG		18	2	0.11	49	0	0				343	0	0				T	52264021	C	T	52264021	2	4	53	1	0	0	0	0	0	0	0	1	16843	697	25	2		2	TWF2	3	52264021	Silent	SNP	C	TCGA-2G-AAHN-01A-11D-A42Y-10	15676253	52264021	145758409	17	3673											
LRRC66	339977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr4	52883329	52883329	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tctttgaagaatgagcacctTcagcaatggaaacctgtttc	8	9	2	3	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001024611	exon1	c.A451T	p.K151X	GCACCTTCAGCAA		157	44	0.28	270	0	0				0	0					A	52883329	T	A	52883329	4	1	53	1	0	0	0	0	0	1	0	0	9062	1792	62	5	2207	5	LRRC66	4	52883329	Nonsense_Mutation	SNP	T	TCGA-2G-AAHN-01A-11D-A42Y-10		52883329	138270947	18	3674											
KIT	3815	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	55599338	55599338	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gagacatcaagaatgattctAattatgtggttaaaggaaac	9	4	2	3	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	KIT,NS,malignant_melanoma,0,44	KIT	NM_000222	exon17	c.A2464T	p.N822Y	GATTCTAATTATG		83	19	0.23	107	0	0		7396	44	83	58	0.7				T	55599338	A	T	55599338	3	4	53	1	0	0	0	0	1	0	0	0	8371	362	13	5	2530	5	KIT	4	55599338	Missense_Mutation	SNP	A	TCGA-2G-AAHN-01A-11D-A42Y-10	2716009	55599338	135554938	19	3675											
PHF15	23338	mdanderson.org	37	chr5	133914249	133914249	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggctggcacagtcggtgCagatcacagcagagaacatg	14	10	1	2	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_015288	exon11	c.C1615T	p.Q539X	TCGGTGCAGATCA		42	3	0.07	77	0	0				77	0	0				T	133914249	C	T	133914249	4	4	53	1	0	0	0	0	0	1	0	0	11873	711	25	2	1653	2	PHF15	5	133914249	Nonsense_Mutation	SNP	C	TCGA-2G-AAHN-01A-11D-A42Y-10		133914249	47001011	20	3676											
CD14	929	mdanderson.org	37	chr5	140011945	140011945	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgccatcagtccgcgttcGcccagtccaggattgtcaga	11	15	2	1	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001174105	exon3	c.C624T	p.G208G	GCGTTCGCCCAGT		38	3	0.08	86	0	0				830	0	0				A	140011945	G	A	140011945	2	1	53	1	0	0	0	0	0	0	0	1	2986	1074	38	1		1	CD14	5	140011945	Silent	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10	6097696	140011945	40903315	21	3677											
TULP1	7287	mdanderson.org	37	chr6	35471611	35471611	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	caaagaccgtgaagcggttcCccaggaggttggacctgcaa	13	11	0	2	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_003322	exon12	c.G1127T	p.G376V	CGGTTCCCCAGGA		37	3	0.08	40	0	0				0	0					A	35471611	C	A	35471611	3	1	53	1	0	0	0	0	1	0	0	0	16834	623	22	3	517	3	TULP1	6	35471611	Missense_Mutation	SNP	C	TCGA-2G-AAHN-01A-11D-A42Y-10		35471611	135643456	22	3678											
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	46661672	46661672	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaagcacaggaatccatgtGtactgaggacatgagaaagt	12	6	0	2	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001168359	exon1	c.G5807A	p.C1936Y	CCATGTGTACTGA		184	19	0.1	258	0	0				7	1	0.14				A	46661672	G	A	46661672	3	1	53	1	0	0	0	0	1	0	0	0	15792	1377	48	3	5809	3	TDRD6	6	46661672	Missense_Mutation	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10	11190061	46661672	124453395	23	3679											
RADIL	55698	mdanderson.org	37	chr7	4845284	4845284	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccagctggtagtgagtcaGcagccggtgcagctgtgctg	17	10	1	1	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_018059	exon10	c.C2203T	p.L735L	GAGTCAGCAGCCG		49	3	0.06	66	0	0				14	0	0				A	4845284	G	A	4845284	2	1	53	1	0	0	0	0	0	0	0	1	13048	962	34	2		2	RADIL	7	4845284	Silent	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10		4845284	154293379	24	3680											
HOXA11	0	broad.mit.edu	37	chr7	27224964	27224964	+	RNA	DEL	C	C	-													ctagctagtccgggccttttCcccccccctttccttttttt					novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	HOXA11	.	.	.	.	CCTTTTCCCCCCC		6	2	0.33	10	0	0		29		0	0					-	27224964	C	-	27224964	6	5	53	0	1	1	0	1	0	0	0	0	7330	870	30	0		0	HOXA11	7	27224964	RNA	DEL	C	TCGA-2G-AAHN-01A-11D-A42Y-10	22379680	27224964	131913699	25	3681											
DDC	1644	broad.mit.edu	37	chr7	50611732	50611732	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgccttccatgtagttggCcatgtaatccaccatctcct	6	13	1	0	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	DDC	NM_001082971	exon2	c.G52A	p.A18T	AGTTGGCCATGTA		272	5	0.02	345	1	0.0028985507		100		0	0					T	50611732	C	T	50611732	3	4	53	1	0	0	0	0	1	0	0	0	4348	739	26	2	1442	2	DDC	7	50611732	Missense_Mutation	SNP	C	TCGA-2G-AAHN-01A-11D-A42Y-10	23386768	50611732	108526931	26	3682											
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	51096848	51096848	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	agcacagccatacactttgtCtttcacttttgcatttaggt	6	10	2	0	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_015198	exon10	c.G1945C	p.D649H	CTTTGTCTTTCAC		197	43	0.22	248	0	0				0	0					G	51096848	C	G	51096848	3	3	53	1	0	0	0	0	1	0	0	0	3676	913	32	5	1856	5	COBL	7	51096848	Missense_Mutation	SNP	C	TCGA-2G-AAHN-01A-11D-A42Y-10	485116	51096848	108041815	27	3683											
MAGI2	9863	broad.mit.edu	37	chr7	77797419	77797419	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	catggcaatgacagctccaaTcaaaatctagagaagcagtg	9	9	2	2	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	MAGI2	NM_012301	exon15	c.A2410T	p.I804F	CTCCAATCAAAAT		172	12	0.07	206	13	0.0631067961		246		0	0					A	77797419	T	A	77797419	3	1	53	1	0	0	0	0	1	0	0	0	9240	1435	50	5	1989	5	MAGI2	7	77797419	Missense_Mutation	SNP	T	TCGA-2G-AAHN-01A-11D-A42Y-10	26700571	77797419	81341244	28	3684											
PPAPDC1B	84513	hgsc.bcm.edu;mdanderson.org	37	chr8	38124886	38124886	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctagcccatcagggaagcagCggtagaagaaatctgggcgt	14	9	2	2	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_032483	exon5	c.G362A	p.R121H	AAGCAGCGGTAGA		122	5	0.04	188	0	0				54	0	0				T	38124886	C	T	38124886	3	4	53	1	0	0	0	0	1	0	0	0	12338	768	27	1	533	1	PPAPDC1B	8	38124886	Missense_Mutation	SNP	C	TCGA-2G-AAHN-01A-11D-A42Y-10		38124886	108239136	29	3685											
MLLT3	4300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	20414230	20414230	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tggagtctttagaaggttttTccttgtgctccttcattaat	8	7	2	1	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_004529	exon5	c.A614T	p.E205V	GGTTTTTCCTTGT		185	36	0.19	271	0	0				3	3	1				A	20414230	T	A	20414230	3	1	53	1	0	0	0	0	1	0	0	0	9675	1783	62	5	1120	5	MLLT3	9	20414230	Missense_Mutation	SNP	T	TCGA-2G-AAHN-01A-11D-A42Y-10		20414230	120799201	30	3686											
COL27A1	85301	mdanderson.org	37	chr9	117002739	117002739	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctggagcccgaggcctgcCgggaccccgtgggcagctgg	18	15	0	0	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_032888	exon21	c.C2807T	p.P936L	GCCTGCCGGGACC		40	3	0.08	45	0	0				2	0	0				T	117002739	C	T	117002739	3	4	53	1	0	0	0	0	1	0	0	0	3708	652	23	1	2889	1	COL27A1	9	117002739	Missense_Mutation	SNP	C	TCGA-2G-AAHN-01A-11D-A42Y-10	96588509	117002739	24210692	31	3687											
PIP5KL1	138429	mdanderson.org	37	chr9	130689596	130689596	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctttccccggtccacccGcagactgtgcactcctggaa	8	17	1	1	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001135219	exon6	c.C574A	p.R192R	CCACCCGCAGACT		49	3	0.06	68	0	0				0	0					T	130689596	G	T	130689596	2	4	53	1	0	0	0	0	0	0	0	1	11989	1086	38	1		1	PIP5KL1	9	130689596	Silent	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10	13686857	130689596	10523835	32	3688											
RET	5979	ucsc.edu	37	chr10	43600502	43600502	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtacgagctggtggccgtgtGcaccgtgcacgccggcgcgc	17	14	0	0	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	RET	NM_020975	exon4	c.G728A	p.C243Y	CCGTGTGCACCGT		35	4	0.11	50	0	0		916		5	0	0				A	43600502	G	A	43600502	3	1	53	1	0	0	0	0	1	0	0	0	13286	1319	46	2	742	2	RET	10	43600502	Missense_Mutation	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10		43600502	91934245	33	3689											
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	56077049	56077049	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accggagttctcaactcaggTatggcagcttgataagtgag	12	8	2	2	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001142763	exon9	c.A873G	p.I291M	CTCAGGTATGGCA		75	10	0.13	118	0	0				0	0					C	56077049	T	C	56077049	3	2	53	1	0	0	0	0	1	0	0	0	11557	1628	57	4	6757	4	PCDH15	10	56077049	Missense_Mutation	SNP	T	TCGA-2G-AAHN-01A-11D-A42Y-10	12476547	56077049	79457698	34	3690											
MUC6	4588	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	1027502	1027502	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtagctgaaggtggtgttaCccgtgcaggggatggctgtg	18	6	0	1	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	MUC6	NM_005961	exon17	c.G1997A	p.G666D	GTGTTACCCGTGC		66	13	0.2	118	1	0.0084745763		408		0	0					T	1027502	C	T	1027502	3	4	53	1	0	0	0	0	1	0	0	0	10027	507	18	3	5390	3	MUC6	11	1027502	Missense_Mutation	SNP	C	TCGA-2G-AAHN-01A-11D-A42Y-10		1027502	133979014	35	3691											
MUC2	4583	mdanderson.org	37	chr11	1092971	1092971	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacggtgaccccaaccccaaCacccaccggcacacagaccc	6	21	0	2	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	MUC2_ENST00000441003,NS,carcinoma,0,1	MUC2_ENST00000441003	NM_002457	exon30	c.C4790T	p.T1597I	CCCCAACACCCAC		33	3	0.09	50	1	0.02		0	1	0	0					T	1092971	C	T	1092971	3	4	53	1	0	0	0	0	1	0	0	0	10022	478	17	3	4908	3	MUC2	11	1092971	Missense_Mutation	SNP	C	TCGA-2G-AAHN-01A-11D-A42Y-10	65469	1092971	133913545	36	3692											
KRTAP5-5	439915	bcgsc.ca	37	chr11	1651203	1651210	+	Frame_Shift_Del	DEL	TGTGGGGG	TGTGGGGG	-													gtggctccggctgtggaggcTgtgggggctgtggctccggc					novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	TGTGGGGG	TGTGGGGG					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	KRTAP5-5	NM_001001480	exon1	c.133_140del	p.45_47del	GGAGGCTGTGGGG		38	4	0.11	76	1	0.0131578947		86		0	0					-	1651210	TGTGGGGG	-	1651203	7	5	53	1	0	1	0	1	0	0	0	0	8602	1580	55	0	135	0	KRTAP5-5	11	1651203	Frame_Shift_Del	DEL	TGTGGGGG	TCGA-2G-AAHN-01A-11D-A42Y-10	558232	1651203	133355313	37	3693											
CTSD	1509	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	1775040	1775040	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attgcccgctcaccttgagcGtgtagtcctctggggacagc	12	13	2	1	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001909	exon8	c.C1064A	p.T355K	TTGAGCGTGTAGT		77	10	0.13	111	0	0				4897	237	0.05				T	1775040	G	T	1775040	3	4	53	1	0	0	0	0	1	0	0	0	4056	1145	40	1	182	1	CTSD	11	1775040	Missense_Mutation	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10	123837	1775040	133231476	38	3694											
DAK	26007	mdanderson.org	37	chr11	61109960	61109960	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggaagctggtgtgcgccGgataaaggtaggtggtccct	18	8	0	0	rs200763152	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_015533	exon8	c.G683T	p.R228L	TGCGCCGGATAAA		45	3	0.07	66	0	0				46	0	0				T	61109960	G	T	61109960	3	4	53	1	0	0	0	0	1	0	0	0	4252	1116	39	1	709	1	DAK	11	61109960	Missense_Mutation	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10	59334920	61109960	73896556	39	3695											
THYN1	29087	broad.mit.edu	37	chr11	134118345	134118345	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atctcagttaacttggttccTtttcctccaggctcaaaaca	5	12	2	0	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	THYN1	NM_014174	exon7	c.A665G	p.K222R	GGTTCCTTTTCCT		208	4	0.02	324	1	0.0030864198		21		188	0	0				C	134118345	T	C	134118345	3	2	53	1	0	0	0	0	1	0	0	0	15945	1609	56	4	16	4	THYN1	11	134118345	Missense_Mutation	SNP	T	TCGA-2G-AAHN-01A-11D-A42Y-10	73008385	134118345	888171	40	3696											
BIN2	51411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr12	51685422	51685422	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	acaaagttcttcagggttctGattgtggatgttttcatttt	9	5	4	1	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_016293	exon10	c.C1468T	p.Q490X	GGTTCTGATTGTG		199	20	0.1	239	0	0				164	5	0.03				A	51685422	G	A	51685422	4	1	53	1	0	0	0	0	0	1	0	0	1432	1299	45	3	245	3	BIN2	12	51685422	Nonsense_Mutation	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10		51685422	82166473	41	3697											
DHRS2	10202	broad.mit.edu	37	chr14	24108495	24108495	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catggccaagctgcagggggAggggctgagtgtggcgggca	21	8	0	1	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	DHRS2	NM_182908	exon3	c.A248G	p.E83G	AGGGGGAGGGGCT		115	5	0.04	122	1	0.0081967213		78		0	0					G	24108495	A	G	24108495	3	3	53	1	0	0	0	0	1	0	0	0	4518	304	11	4	254	4	DHRS2	14	24108495	Missense_Mutation	SNP	A	TCGA-2G-AAHN-01A-11D-A42Y-10		24108495	83241045	42	3698											
SPATA5L1	79029	mdanderson.org	37	chr15	45694836	45694836	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggcgggacggagcggacgGctttgtgcagctggacccgc	18	12	0	0	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_024063	exon1	c.G209A	p.G70D	CGGACGGCTTTGT		17	2	0.12	24	0	0				8	0	0				A	45694836	G	A	45694836	3	1	53	1	0	0	0	0	1	0	0	0	15067	1203	42	2	211	2	SPATA5L1	15	45694836	Missense_Mutation	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10		45694836	56836556	43	3699											
SRRM2	23524	ucsc.edu	37	chr16	2817298	2817298	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaacagcagtgaacctgGctgactctcgaacgccagct	9	14	1	2	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	SRRM2	NM_016333	exon11	c.G6769T	p.A2257S	AACCTGGCTGACT		50	5	0.1	59	0	0		263		352	13	0.04				T	2817298	G	T	2817298	3	4	53	1	0	0	0	0	1	0	0	0	15224	1203	42	2	6807	2	SRRM2	16	2817298	Missense_Mutation	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10		2817298	87537455	44	3700											
POLR3E	55718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	22326410	22326410	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttccccttcccaccgcagGtgcggttctcccggccggag	11	18	2	0	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001258033	exon9	c.G523A	p.V175M	CCGCAGGTGCGGT		101	7	0.07	115	0	0				15	8	0.53				A	22326410	G	A	22326410	3	1	53	1	0	0	0	0	1	0	0	0	12279	1275	44	3	553	3	POLR3E	16	22326410	Missense_Mutation	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10	19509112	22326410	68028343	45	3701											
ZNF778	197320	hgsc.bcm.edu	37	chr16	89294051	89294051	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgagaagccatacacgtgtaAggactgcgggaaagccttct	12	10	1	1	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001201407	exon7	c.A1355G	p.K452R	CGTGTAAGGACTG		84	4	0.05	128	0	0				1	0	0				G	89294051	A	G	89294051	3	3	53	1	0	0	0	0	1	0	0	0	18199	72	3	4	1289	4	ZNF778	16	89294051	Missense_Mutation	SNP	A	TCGA-2G-AAHN-01A-11D-A42Y-10	66967641	89294051	1060702	46	3702											
ZNF276	92822	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	89789049	89789049	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggagcgagcatggagaggCcatccgcagaggagcgcgtg	18	10	0	2	rs202152544	by1000genomes;alternate_allele	TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	ZNF276	NM_001113525	exon2	c.C316A	p.P106T	GAGAGGCCATCCG		49	10	0.2	76	1	0.0131578947		70		9	0	0				A	89789049	C	A	89789049	3	1	53	1	0	0	0	0	1	0	0	0	17868	739	26	2	322	2	ZNF276	16	89789049	Missense_Mutation	SNP	C	TCGA-2G-AAHN-01A-11D-A42Y-10	494998	89789049	565704	47	3703											
KIF1C	10749	hgsc.bcm.edu;broad.mit.edu	37	chr17	4925727	4925727	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caagatgcgggagctgtgtcGcacctatggcaagccagacg	14	11	0	2	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	KIF1C,NS,carcinoma,0,1	KIF1C	NM_006612	exon22	c.G2351T	p.R784L	TGTGTCGCACCTA		69	3	0.04	87	0	0		0	1	462	0	0				T	4925727	G	T	4925727	3	4	53	1	0	0	0	0	1	0	0	0	8326	1087	38	1	2429	1	KIF1C	17	4925727	Missense_Mutation	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10		4925727	76269483	48	3704											
LLGL1	3996	mdanderson.org	37	chr17	18140236	18140236	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atacagcccagatggtggtgGctggcactgcaggccaggta	15	10	0	1	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_004140	exon13	c.G1594A	p.A532T	GTGGTGGCTGGCA		50	3	0.06	60	0	0				50	0	0				A	18140236	G	A	18140236	3	1	53	1	0	0	0	0	1	0	0	0	8873	1203	42	2	1644	2	LLGL1	17	18140236	Missense_Mutation	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10	13214509	18140236	63054974	49	3705											
DNAH17	8632	mdanderson.org	37	chr17	76457693	76457693	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctttgctgaccttctcgGcctcgatgccgaccacctgg	9	16	2	1	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_173628	exon58	c.C9272A	p.A3091D	TTCTCGGCCTCGA		42	3	0.07	72	0	0				1	0	0				T	76457693	G	T	76457693	3	4	53	1	0	0	0	0	1	0	0	0	4629	1203	42	2	4212	2	DNAH17	17	76457693	Missense_Mutation	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10	58317457	76457693	4737517	50	3706											
WDR7	23335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	54424172	54424172	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatcctgaatatcggtccaGcaaatcaaagccattgaccc	7	12	1	3	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_052834	exon15	c.G2348A	p.S783N	GGTCCAGCAAATC		102	15	0.15	167	0	0				0	0					A	54424172	G	A	54424172	3	1	53	1	0	0	0	0	1	0	0	0	17379	971	34	2	2402	2	WDR7	18	54424172	Missense_Mutation	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10		54424172	23653076	51	3707											
MAG	4099	mdanderson.org	37	chr19	35786622	35786622	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacttcccggatgagctgcgGcccgctgtggtgcatggtgt	16	11	0	1	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	MAG_ENST00000392213,caecum,carcinoma,+1,4	MAG_ENST00000392213	NM_080600	exon4	c.G153T	p.R51R	GCTGCGGCCCGCT		37	3	0.08	59	0	0		1	4	0	0					T	35786622	G	T	35786622	2	4	53	1	0	0	0	0	0	0	0	1	9207	1190	42	2		2	MAG	19	35786622	Silent	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10		35786622	23342361	52	3708											
MLL4	0	broad.mit.edu;bcgsc.ca	37	chr19	36213928	36213928	+	Frame_Shift_Del	DEL	C	C	-													gcgtccgagactgagagtgtCccgtcacggtcccggcgggg					novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	MLL4	NM_014727	exon6	c.2754delC	p.V918fs	GAGTGTCCCGTCA		68	8	0.12	90	0	0		229		11	0	0				-	36213928	C	-	36213928	7	5	53	1	0	1	0	1	0	0	0	0	9670	842	30	0	2776	0	MLL4	19	36213928	Frame_Shift_Del	DEL	C	TCGA-2G-AAHN-01A-11D-A42Y-10	427306	36213928	22915055	53	3709											
DPF1	8193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	38709684	38709684	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggccaccctccttcttcaGgggtgcttcacagtctgggg	13	13	4	0	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001135155	exon4	c.C394T	p.L132L	TCTTCAGGGGTGC		67	8	0.12	68	0	0				43	8	0.19				A	38709684	G	A	38709684	2	1	53	1	0	0	0	0	0	0	0	1	4743	991	35	3		3	DPF1	19	38709684	Silent	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10	2495756	38709684	20419299	54	3710											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr19	38976839	38976839	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaagctcgtgtccaccctGctggtaatggcttcctcctg	9	15	1	0	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001042723	exon34	c.G5544T	p.L1848L	CACCCTGCTGGTA		124	5	0.04	153	0	0				0	0					T	38976839	G	T	38976839	2	4	53	1	0	0	0	0	0	0	0	1	13819	1306	46	2		2	RYR1	19	38976839	Silent	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10	267155	38976839	20152144	55	3711											
EGLN2	112398	mdanderson.org	37	chr19	41306775	41306775	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaggcgctgcagcgctgGtcaccaaggggtgccagcga	17	11	1	1	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_080732	exon2	c.G298T	p.V100F	GCGCTGGTCACCA		44	3	0.07	64	0	0				157	0	0				T	41306775	G	T	41306775	3	4	53	1	0	0	0	0	1	0	0	0	4995	1261	44	3	300	3	EGLN2	19	41306775	Missense_Mutation	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10	2329936	41306775	17822208	56	3712											
TGM2	7052	ucsc.edu;mdanderson.org	37	chr20	36775125	36775125	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcgtgcagctcacctgtgcAggccacggcggcgaagaccc	14	15	1	1	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	TGM2	NM_198951	exon6	c.T853C	p.C285R	CTGTGCAGGCCAC		45	4	0.09	78	0	0		88		27	0	0				G	36775125	A	G	36775125	3	3	53	1	0	0	0	0	1	0	0	0	15889	188	7	4	1274	4	TGM2	20	36775125	Missense_Mutation	SNP	A	TCGA-2G-AAHN-01A-11D-A42Y-10		36775125	26250395	57	3713											
PTPN1	5770	bcgsc.ca;mdanderson.org	37	chr20	49177939	49177939	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgacttcccatgtagagtgGccaagcttcctaagaacaaa	9	10	0	3	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	PTPN1	NM_002827	exon2	c.G103A	p.A35T	AGAGTGGCCAAGC		99	5	0.05	156	0	0		36		30	0	0				A	49177939	G	A	49177939	3	1	53	1	0	0	0	0	1	0	0	0	12828	1203	42	2	109	2	PTPN1	20	49177939	Missense_Mutation	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10	12402814	49177939	13847581	58	3714											
FAM65C	140876	mdanderson.org	37	chr20	49226132	49226132	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggcgcactcgtgcaggctgCggcccagctcctgcaggctc	14	17	0	0	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_080829	exon7	c.G542A	p.R181H	AGGCTGCGGCCCA		16	2	0.13	19	0	0				1	0	0				T	49226132	C	T	49226132	3	4	53	1	0	0	0	0	1	0	0	0	5635	768	27	1	2362	1	FAM65C	20	49226132	Missense_Mutation	SNP	C	TCGA-2G-AAHN-01A-11D-A42Y-10	48193	49226132	13799388	59	3715											
KCNQ2	3785	mdanderson.org	37	chr20	62038606	62038606	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggctgtcttccgggctgtgGtacggcggcgccggctccgg	18	14	1	0	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_172107	exon17	c.C2010A	p.Y670X	GCTGTGGTACGGC		23	3	0.13	17	0	0				1	0	0				T	62038606	G	T	62038606	4	4	53	1	0	0	0	0	0	1	0	0	8126	1256	44	3	612	3	KCNQ2	20	62038606	Nonsense_Mutation	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10	12812474	62038606	986914	60	3716											
RAB36	9609	mdanderson.org	37	chr22	23503703	23503703	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaaatggaagggagtccGcccgagacccaggagagcaa	14	10	0	3	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_004914	exon11	c.G954T	p.P318P	GAGTCCGCCCGAG		24	2	0.08	38	0	0				9	0	0				T	23503703	G	T	23503703	2	4	53	1	0	0	0	0	0	0	0	1	12977	1074	38	1		1	RAB36	22	23503703	Silent	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10		23503703	27800863	61	3717											
RPL3	6122	mdanderson.org	37	chr22	39709644	39709644	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggacctgcctcaccttgcGgagggtgagcacccgcttct	12	15	2	1	rs375229574	alternate_allele	TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_000967	exon8	c.C1042A	p.R348S	CCTTGCGGAGGGT		55	3	0.05	66	0	0				2419	1	0				T	39709644	G	T	39709644	3	4	53	1	0	0	0	0	1	0	0	0	13630	1116	39	1	181	1	RPL3	22	39709644	Missense_Mutation	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10	16205941	39709644	11594922	62	3718											
OTUD5	55593	mdanderson.org	37	chrX	48781269	48781269	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cggggaccggctagtccactCctccaggccactggaggctg	14	15	0	0	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_017602	exon7	c.G1339A	p.E447K	TCCACTCCTCCAG		43	3	0.07	80	0	0				121	0	0				T	48781269	C	T	48781269	3	4	53	1	0	0	0	0	1	0	0	0	11361	864	30	3	388	3	OTUD5	23	48781269	Missense_Mutation	SNP	C	TCGA-2G-AAHN-01A-11D-A42Y-10		48781269	106489291	63	3719											
SLC25A5	292	mdanderson.org	37	chrX	118603654	118603654	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccagcaagcagatcactgcaGataagcaatacaaaggcatt	8	10	1	2	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001152	exon2	c.G142T	p.D48Y	ACTGCAGATAAGC		45	3	0.07	89	0	0				301	0	0				T	118603654	G	T	118603654	3	4	53	1	0	0	0	0	1	0	0	0	14566	942	33	3	148	3	SLC25A5	23	118603654	Missense_Mutation	SNP	G	TCGA-2G-AAHN-01A-11D-A42Y-10	69822385	118603654	36666906	64	3720											
ATP6AP1	537	mdanderson.org	37	chrX	153661316	153661316	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agggaagtcctcacaggcaaCggtgagtagaatcagggagg	16	7	2	2	novel		TCGA-2G-AAHN-01A-11D-A42Y-10	TCGA-2G-AAHN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7eda3025-76bf-4914-a2a7-afad6491006b	23de8c57-d3d5-4159-b0d5-283a67238ac3	.	.	NM_001183	exon5	c.C597T	p.N199N	AGGCAACGGTGAG		50	3	0.06	60	0	0				274	0	0				T	153661316	C	T	153661316	2	4	53	1	0	0	0	0	0	0	0	1	1163	550	19	1		1	ATP6AP1	23	153661316	Silent	SNP	C	TCGA-2G-AAHN-01A-11D-A42Y-10	35057662	153661316	1609244	65	3721											
RERE	473	mdanderson.org	37	chr1	8421286	8421286	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgggccctggcgtgggcaGctgaggggtccctggaggag	21	10	0	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_012102	exon19	c.C2281A	p.L761M	TGGGCAGCTGAGG		16	3	0.19	19	0	0				26	0	0				T	8421286	G	T	8421286	3	4	54	1	0	0	0	0	1	0	0	0	13282	962	34	2	2443	2	RERE	1	8421286	Missense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10		8421286	240829335	1	3722											
HIVEP3	59269	mdanderson.org	37	chr1	42046701	42046701	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttttgatctggggcagatgGctttccacatcaccagggag	13	9	2	2	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_024503	exon4	c.C3768T	p.S1256S	CAGATGGCTTTCC		34	3	0.09	52	0	0				2	0	0				A	42046701	G	A	42046701	2	1	54	1	0	0	0	0	0	0	0	1	7228	1194	42	2		2	HIVEP3	1	42046701	Silent	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	33625415	42046701	207203920	2	3723											
KLF17	128209	mdanderson.org	37	chr1	44595437	44595437	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gccagtctcggcttccactgGaatcccaataatgtcccaca	7	15	1	0	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_173484	exon2	c.G494T	p.G165V	CCACTGGAATCCC		49	3	0.06	70	0	0				0	0					T	44595437	G	T	44595437	3	4	54	1	0	0	0	0	1	0	0	0	8387	1174	41	3	500	3	KLF17	1	44595437	Missense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	2548736	44595437	204655184	3	3724											
DENND2D	79961	mdanderson.org	37	chr1	111739831	111739831	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccgaagcagccgatgcagctGatgatgcagtacactttggg	13	10	0	2	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_024901	exon5	c.C471A	p.I157I	GCAGCTGATGATG		19	2	0.11	45	0	0				6	0	0				T	111739831	G	T	111739831	2	4	54	1	0	0	0	0	0	0	0	1	4459	1280	45	3		3	DENND2D	1	111739831	Silent	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	67144394	111739831	137510790	4	3725											
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr1	181765833	181765833	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgacactcaccgctcagggGgcagggagcggggacgatca	16	12	3	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001205293	exon47	c.G6238A	p.G2080S	TCAGGGGGCAGGG		125	38	0.3	124	0	0				2	1	0.5				A	181765833	G	A	181765833	3	1	54	1	0	0	0	0	1	0	0	0	2560	1232	43	3	6291	3	CACNA1E	1	181765833	Missense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	70026002	181765833	67484788	5	3726											
PRG4	10216	broad.mit.edu	37	chr1	186276585	186276585	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acccccaagaagcctgccccAactacccccaaggagcctgc	7	20	0	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	PRG4	NM_005807	exon7	c.A1734C	p.P578P	TGCCCCAACTACC		96	21	0.22	74	4	0.0540540541		259		0	0					C	186276585	A	C	186276585	2	2	54	1	0	0	0	0	0	0	0	1	12532	117	5	4		4	PRG4	1	186276585	Silent	SNP	A	TCGA-2G-AAHP-01A-12D-A42Y-10	4510752	186276585	62974036	6	3727											
NAV1	89796	bcgsc.ca	37	chr1	201778383	201778383	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	atgcccccgcagcacatcatCaaaggggtaaggaacttcag	10	12	3	0	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	NAV1	NM_020443	exon21	c.C4299G	p.I1433M	CATCATCAAAGGG		312	0	0	400	0	0		143		19	0	0				G	201778383	C	G	201778383	3	3	54	1	0	0	0	0	1	0	0	0	10230	816	29	5	4438	5	NAV1	1	201778383	Missense_Mutation	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10	15501798	201778383	47472238	7	3728											
SYT2	127833	broad.mit.edu	37	chr1	202566020	202566020	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cccgtggcattgctgcccacGaagatcttgcctatggcttc	10	14	1	1	rs139376371	alternate_allele	TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	SYT2	NM_001136504	exon9	c.C1125A	p.F375L	GCCCACGAAGATC		115	6	0.05	101	1	0.0099009901		51		8	0	0				T	202566020	G	T	202566020	3	4	54	1	0	0	0	0	1	0	0	0	15530	1049	37	1	138	1	SYT2	1	202566020	Missense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	787637	202566020	46684601	8	3729											
RYR2	6262	bcgsc.ca	37	chr1	237789007	237789007	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggatggaaacagtgatttAacaattagagggcgtctgct	12	6	1	2	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	RYR2	NM_001035	exon40	c.A6069C	p.L2023F	TGATTTAACAATT		73	0	0	65	0	0		1273		0	0					C	237789007	A	C	237789007	3	2	54	1	0	0	0	0	1	0	0	0	13820	359	13	4	6227	4	RYR2	1	237789007	Missense_Mutation	SNP	A	TCGA-2G-AAHP-01A-12D-A42Y-10	35222987	237789007	11461614	9	3730											
ZNF672	79894	broad.mit.edu	37	chr1	249141630	249141630	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgcggtgagcgctgtgcaCgggctgctgacctccgagcg	16	12	0	2	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	ZNF672	NM_024836	exon4	c.C157T	p.R53W	TGTGCACGGGCTG		98	3	0.03	100	0	0		32		19	0	0				T	249141630	C	T	249141630	3	4	54	1	0	0	0	0	1	0	0	0	18135	527	19	1	159	1	ZNF672	1	249141630	Missense_Mutation	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10	11352623	249141630	108991	10	3731											
NEB	4703	broad.mit.edu	37	chr2	152382707	152382707	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgacagtcttcgccagcaGgatctgaggcgtgtcaggta	14	10	3	2	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	NEB	NM_001271208	exon150	c.C22120A	p.L7374M	CCAGCAGGATCTG		155	5	0.03	158	0	0		1697		8	0	0				T	152382707	G	T	152382707	3	4	54	1	0	0	0	0	1	0	0	0	10348	991	35	3	3698	3	NEB	2	152382707	Missense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10		152382707	90816666	11	3732											
XIRP2	129446	broad.mit.edu	37	chr2	168114492	168114492	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcataaagatagatggaactGcaaaaaccaaagcagatcag	9	7	1	3	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	XIRP2	NM_001199143	exon11	c.G1535A	p.C512Y	GGAACTGCAAAAA		258	5	0.02	264	0	0		914		0	0					A	168114492	G	A	168114492	3	1	54	1	0	0	0	0	1	0	0	0	17489	1319	46	2	10853	2	XIRP2	2	168114492	Missense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	15731785	168114492	75084881	12	3733											
HDLBP	3069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr2	242189261	242189261	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agccatggcacttaccatgcGagatgcaagctccagcagct	10	13	0	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_005336	exon12	c.C1507T	p.R503C	CCATGCGAGATGC		35	12	0.34	44	0	0				186	55	0.3				A	242189261	G	A	242189261	3	1	54	1	0	0	0	0	1	0	0	0	7065	1058	37	1	2367	1	HDLBP	2	242189261	Missense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	74074769	242189261	1010112	13	3734											
PLXND1	23129	broad.mit.edu;mdanderson.org	37	chr3	129324383	129324383	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcgaagacagcaaagagcCgctcccgggctgggaagacc	14	13	0	3	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	PLXND1	NM_015103	exon1	c.G1100T	p.R367L	AAGAGCCGCTCCC		12	6	0.5	25	0	0		149		1	0	0				A	129324383	C	A	129324383	3	1	54	1	0	0	0	0	1	0	0	0	12174	652	23	1	4821	1	PLXND1	3	129324383	Missense_Mutation	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10		129324383	68698047	14	3735											
COL6A5	256076	broad.mit.edu	37	chr3	130134524	130134524	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggcagaaaaggagaaaaAggaagccaggggcagaaagg	16	6	0	3	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	COL6A5	NM_153264	exon23	c.A4797G	p.K1599K	AGAAAAAGGAAGC		547	4	0.01	644	1	0.001552795		205		0	0					G	130134524	A	G	130134524	2	3	54	1	0	0	0	0	0	0	0	1	3725	69	3	4		4	COL6A5	3	130134524	Silent	SNP	A	TCGA-2G-AAHP-01A-12D-A42Y-10	810141	130134524	67887906	15	3736											
LAMP3	27074	mdanderson.org	37	chr3	182841955	182841955	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagagaccaaccacgatggCcccaatcacaggaagcacaa	9	14	1	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_014398	exon6	c.G1165A	p.A389T	CGATGGCCCCAAT		129	5	0.04	123	0	0				4	0	0				T	182841955	C	T	182841955	3	4	54	1	0	0	0	0	1	0	0	0	8657	739	26	2	89	2	LAMP3	3	182841955	Missense_Mutation	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10	52707431	182841955	15180475	16	3737											
PDS5A	23244	bcgsc.ca	37	chr4	39839559	39839559	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gctttggcattacctgcttcCaaacccccagggctctcctg	8	16	1	0	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	PDS5A	NM_001100399	exon32	c.G3927C	p.L1309F	TGCTTCCAAACCC		96	0	0	139	0	0		114		52	0	0				G	39839559	C	G	39839559	3	3	54	1	0	0	0	0	1	0	0	0	11737	593	21	5	94	5	PDS5A	4	39839559	Missense_Mutation	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10		39839559	151314717	17	3738											
GSX2	170825	mdanderson.org	37	chr4	54966518	54966518	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacccctctcgacatgtcgCgctccttctatgtcgactcg	7	18	2	0	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_133267	exon1	c.C7A	p.R3S	ATGTCGCGCTCCT		48	3	0.06	70	1	0.0142857143				0	0					A	54966518	C	A	54966518	3	1	54	1	0	0	0	0	1	0	0	0	6890	768	27	1	9	1	GSX2	4	54966518	Missense_Mutation	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10	15126959	54966518	136187758	18	3739											
EPHA5	2044	mdanderson.org	37	chr4	66270181	66270181	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acaggaatctggctttgatcGctggatgctgcaactgctga	12	9	1	2	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_182472	exon8	c.C1701T	p.S567S	TTGATCGCTGGAT		67	4	0.06	77	1	0.012987013				0	0					A	66270181	G	A	66270181	2	1	54	1	0	0	0	0	0	0	0	1	5198	1078	38	1		1	EPHA5	4	66270181	Silent	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	11303663	66270181	124884095	19	3740											
SDAD1	55153	broad.mit.edu	37	chr4	76903125	76903125	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctctgctagttctttgctGggtttatttggttgcaattt	10	6	2	0	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	SDAD1	NM_018115	exon2	c.C156A	p.P52P	TTTGCTGGGTTTA		70	4	0.06	81	1	0.012345679		47		23	0	0				T	76903125	G	T	76903125	2	4	54	1	0	0	0	0	0	0	0	1	14003	1335	47	3		3	SDAD1	4	76903125	Silent	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	10632944	76903125	114251151	20	3741											
FRAS1	80144	mdanderson.org	37	chr4	79284696	79284696	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgtgccagcactgtgcaGctgatctccacaacactggg	10	14	1	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_025074	exon21	c.G2452T	p.A818S	TGTGCAGCTGATC		51	3	0.06	77	0	0				2	0	0				T	79284696	G	T	79284696	3	4	54	1	0	0	0	0	1	0	0	0	6075	971	34	2	2534	2	FRAS1	4	79284696	Missense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	2381571	79284696	111869580	21	3742											
ARHGAP24	83478	bcgsc.ca	37	chr4	86491797	86491797	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaaggaggctttgtcaagActtggcatactcgctggttt	12	8	1	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	ARHGAP24	NM_001025616	exon2	c.A103G	p.T35A	GTCAAGACTTGGC		110	0	0	141	0	0		116		2	0	0				G	86491797	A	G	86491797	3	3	54	1	0	0	0	0	1	0	0	0	870	275	10	4	105	4	ARHGAP24	4	86491797	Missense_Mutation	SNP	A	TCGA-2G-AAHP-01A-12D-A42Y-10	7207101	86491797	104662479	22	3743											
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr4	125592523	125592523	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcagcatctgcacaatccaCttttacgccagcataaagta	5	12	2	0	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_020337	exon4	c.G1909A	p.V637M	AATCCACTTTTAC		94	52	0.55	121	0	0				2	0	0				T	125592523	C	T	125592523	3	4	54	1	0	0	0	0	1	0	0	0	671	565	20	3	2384	3	ANKRD50	4	125592523	Missense_Mutation	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10	39100726	125592523	65561753	23	3744											
DMXL1	1657	mdanderson.org	37	chr5	118511022	118511022	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	atcagtgcctttgtggtagtCataactacaggtaactatct	8	8	3	0	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_005509	exon26	c.C6748T	p.H2250Y	GGTAGTCATAACT		46	3	0.07	49	0	0				5	0	0				T	118511022	C	T	118511022	3	4	54	1	0	0	0	0	1	0	0	0	4622	826	29	3	6850	3	DMXL1	5	118511022	Missense_Mutation	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10		118511022	62404238	24	3745											
NSD1	64324	bcgsc.ca	37	chr5	176636782	176636782	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tatgccatttgaagactgcaCaaatgatcctgagtcagaac	8	9	1	5	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	NSD1	NM_022455	exon5	c.C1382G	p.T461R	ACTGCACAAATGA		115	0	0	199	0	0		416		9	0	0				G	176636782	C	G	176636782	3	3	54	1	0	0	0	0	1	0	0	0	10716	478	17	5	1396	5	NSD1	5	176636782	Missense_Mutation	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10	58125760	176636782	4278478	25	3746											
DEK	7913	mdanderson.org	37	chr6	18264096	18264096	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttcctcctcctcctcctcCtcgtcgtcctcgtcctcttc	3	21	1	0	rs147127829	bycluster;byfrequency;by1000genomes	TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_003472	exon2	c.G123C	p.E41D	CTCCTCCTCGTCG		128	5	0.04	132	0	0	0.001			18	0	0				G	18264096	C	G	18264096	3	3	54	1	0	0	0	0	1	0	0	0	4452	680	24	5	1044	5	DEK	6	18264096	Missense_Mutation	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10		18264096	152850971	26	3747											
KCTD20	222658	broad.mit.edu	37	chr6	36454762	36454762	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catccagatgtcatgggaaaAggaagaagggaagagtcgcc	14	7	1	3	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	KCTD20	NM_173562	exon8	c.A1070G	p.K357R	GGGAAAAGGAAGA		144	4	0.03	145	1	0.0068965517		37		16	0	0				G	36454762	A	G	36454762	3	3	54	1	0	0	0	0	1	0	0	0	8151	72	3	4	1096	4	KCTD20	6	36454762	Missense_Mutation	SNP	A	TCGA-2G-AAHP-01A-12D-A42Y-10	18190666	36454762	134660305	27	3748											
RNF8	9025	bcgsc.ca	37	chr6	37358600	37358600	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgagatggtctggaggatTctctctagccgtgactccgc	12	12	3	2	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	RNF8	NM_183078	exon7	c.T1319A	p.F440Y	GAGGATTCTCTCT		65	0	0	88	0	0		78		137	0	0				A	37358600	T	A	37358600	3	1	54	1	0	0	0	0	1	0	0	0	13551	1783	62	5	1554	5	RNF8	6	37358600	Missense_Mutation	SNP	T	TCGA-2G-AAHP-01A-12D-A42Y-10	903838	37358600	133756467	28	3749											
CUL9	23113	mdanderson.org	37	chr6	43154177	43154177	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttccggcagagcaacaacgGcattccccctgtgcaggtgg	13	13	0	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	CUL9,NS,carcinoma,-1,1	CUL9	NM_015089	exon4	c.G1235A	p.G412D	ACAACGGCATTCC		72	4	0.06	46	0	0		-1	1	1	0	0				A	43154177	G	A	43154177	3	1	54	1	0	0	0	0	1	0	0	0	4084	1203	42	2	1245	2	CUL9	6	43154177	Missense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	5795577	43154177	127960890	29	3750											
CUL9	23113	mdanderson.org	37	chr6	43183047	43183047	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctttctgtggcagccagagCgaaacctccaagcccaggta	10	14	1	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_015089	exon30	c.C5919T	p.S1973S	CCAGAGCGAAACC		20	2	0.1	24	0	0				15	0	0				T	43183047	C	T	43183047	2	4	54	1	0	0	0	0	0	0	0	1	4084	767	27	1		1	CUL9	6	43183047	Silent	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10	28870	43183047	127932020	30	3751											
CASD1	64921	broad.mit.edu	37	chr7	94147626	94147626	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aatccccaattcaaagaagaAggaaataaggtaaaacttgt	7	6	1	2	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	CASD1	NM_022900	exon3	c.A342G	p.E114E	AGAAGAAGGAAAT		176	4	0.02	138	0	0		70		4	0	0				G	94147626	A	G	94147626	2	3	54	1	0	0	0	0	0	0	0	1	2682	69	3	4		4	CASD1	7	94147626	Silent	SNP	A	TCGA-2G-AAHP-01A-12D-A42Y-10		94147626	64991037	31	3752											
MUC17	140453	mdanderson.org	37	chr7	100681533	100681533	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aactcttagtgaaggaacgaCtccattaacaagtatacctg	7	9	1	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001040105	exon3	c.C6836A	p.T2279N	GAACGACTCCATT		124	8	0.06	86	0	0				0	0					A	100681533	C	A	100681533	3	1	54	1	0	0	0	0	1	0	0	0	10021	565	20	3	6846	3	MUC17	7	100681533	Missense_Mutation	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10	6533907	100681533	58457130	32	3753											
COG5	0	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr7	106888937	106888937	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcattttccataagagcaTgaatagcctaaaaaaaaaaa	5	7	0	2	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	COG5	NM_006348	exon17	c.A1850G	p.H617R	AGAGCATGAATAG		63	9	0.14	64	0	0		78		27	4	0.15				C	106888937	T	C	106888937	3	2	54	1	0	0	0	0	1	0	0	0	3684	1464	51	4	760	4	COG5	7	106888937	Missense_Mutation	SNP	T	TCGA-2G-AAHP-01A-12D-A42Y-10	6207404	106888937	52249726	33	3754											
TRPV6	55503	mdanderson.org	37	chr7	142573303	142573303	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttgagggggcggtagatgCagcacatggtgaagcagatg	18	6	0	4	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_018646	exon8	c.G1040A	p.C347Y	TAGATGCAGCACA		18	2	0.11	35	0	0				0	0					T	142573303	C	T	142573303	3	4	54	1	0	0	0	0	1	0	0	0	16660	710	25	2	1169	2	TRPV6	7	142573303	Missense_Mutation	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10	35684366	142573303	16565360	34	3755											
PCMTD1	115294	bcgsc.ca	37	chr8	52733143	52733143	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtgttaattctctgtttaActctctttcttttccttttg	4	8	3	0	rs111785933	bycluster	TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	PCMTD1	NM_052937	exon6	c.T842C	p.V281A	TGTTTAACTCTCT		186	13	0.07	176	4	0.0227272727		73		43	0	0				G	52733143	A	G	52733143	3	3	54	1	0	0	0	0	1	0	0	0	11632	43	2	4	235	4	PCMTD1	8	52733143	Missense_Mutation	SNP	A	TCGA-2G-AAHP-01A-12D-A42Y-10		52733143	93630879	35	3756											
PRUNE2	158471	mdanderson.org	37	chr9	79259771	79259771	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcccgttcctcttcggccGtatattctggaatagactct	7	14	3	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_015225	exon12	c.C8612T	p.T2871M	TCGGCCGTATATT		126	5	0.04	114	1	0.0087719298				15	0	0				A	79259771	G	A	79259771	3	1	54	1	0	0	0	0	1	0	0	0	12689	1145	40	1	686	1	PRUNE2	9	79259771	Missense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10		79259771	61953660	36	3757											
PTGR1	22949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr9	114356535	114356535	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacggtgaggaacaaagctTcaagcaggacctctacaaaa	9	11	2	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001146108	exon3	c.A119C	p.E40A	AAAGCTTCAAGCA		111	55	0.5	132	0	0				85	28	0.33				G	114356535	T	G	114356535	3	3	54	1	0	0	0	0	1	0	0	0	12802	1783	62	4	933	4	PTGR1	9	114356535	Missense_Mutation	SNP	T	TCGA-2G-AAHP-01A-12D-A42Y-10	35096764	114356535	26856896	37	3758											
SLC2A6	11182	mdanderson.org	37	chr9	136340191	136340191	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggccacggtgatgggccgGcacacgtgtggggcccgtgc	18	12	0	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001145099	exon6	c.C819T	p.C273C	GGGCCGGCACACG		41	3	0.07	45	0	0				6	0	0				A	136340191	G	A	136340191	2	1	54	1	0	0	0	0	0	0	0	1	14603	1195	42	2		2	SLC2A6	9	136340191	Silent	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	21983656	136340191	4873240	38	3759											
EXOSC1	51013	mdanderson.org	37	chr10	99196205	99196205	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtaaaaagtggcttcttaGgtctgcaagaattcgggttg	14	5	2	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_016046	exon8	c.C585A	p.T195T	TTCTTAGGTCTGC		75	5	0.07	79	0	0				170	0	0				T	99196205	G	T	99196205	2	4	54	1	0	0	0	0	0	0	0	1	5340	987	35	3		3	EXOSC1	10	99196205	Silent	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10		99196205	36338542	39	3760											
LZTS2	84445	broad.mit.edu	37	chr10	102766682	102766682	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcgggagcggcggcggggTgaggagcagcgggacagctt	22	9	0	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	LZTS2	NM_032429	exon5	c.T1767G	p.G589G	GCGGGGTGAGGAG		58	9	0.16	83	9	0.1084337349		57		30	1	0.03				G	102766682	T	G	102766682	2	3	54	1	0	0	0	0	0	0	0	1	9184	1683	59	4		4	LZTS2	10	102766682	Silent	SNP	T	TCGA-2G-AAHP-01A-12D-A42Y-10	3570477	102766682	32768065	40	3761											
COL17A1	1308	mdanderson.org	37	chr10	105810657	105810657	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gagcccttggagacctacagGacctgcccggcagaagaaac	12	13	0	3	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_000494	exon26	c.C2041A	p.P681T	CTACAGGACCTGC		35	3	0.09	62	0	0				10	0	0				T	105810657	G	T	105810657	3	4	54	1	0	0	0	0	1	0	0	0	3697	1174	41	3	2576	3	COL17A1	10	105810657	Missense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	3043975	105810657	29724090	41	3762											
KCNA4	3739	hgsc.bcm.edu;broad.mit.edu	37	chr11	30032345	30032347	+	In_Frame_Del	DEL	CTC	CTC	-													tccccctttccctgacacttCtcctcctttgcacacagaga					novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	CTC	CTC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	KCNA4	NM_002233	exon2	c.1880_1882del	p.627_628del	ACACTTCTCCTCC		88	42	0.48	169	0	0		158		0	0					-	30032347	CTC	-	30032345	7	5	54	1	0	1	0	1	0	0	0	0	8048	912	32	0	84	0	KCNA4	11	30032345	In_Frame_Del	DEL	CTC	TCGA-2G-AAHP-01A-12D-A42Y-10		30032345	104974171	42	3763											
FOLH1	2346	bcgsc.ca	37	chr11	49204790	49204790	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaattccacgcctataagcAtattctgaaaaaaaaaattg	5	8	1	1	rs76509850	bycluster;byfrequency	TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	FOLH1	NM_004476	exon7	c.T831C	p.Y277Y	ATAAGCATATTCT		134	3	0.02	191	2	0.0104712042		141		0	0					G	49204790	A	G	49204790	2	3	54	1	0	0	0	0	0	0	0	1	6011	224	8	4		4	FOLH1	11	49204790	Silent	SNP	A	TCGA-2G-AAHP-01A-12D-A42Y-10	19172445	49204790	85801726	43	3764											
FEN1	2237	mdanderson.org	37	chr11	61563052	61563052	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgttctaccgcaccattcgCatgatggagaacggcatcaa	9	11	2	2	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_004111	exon2	c.C219T	p.R73R	CATTCGCATGATG		41	3	0.07	32	0	0				108	0	0				T	61563052	C	T	61563052	2	4	54	1	0	0	0	0	0	0	0	1	5844	697	25	2		2	FEN1	11	61563052	Silent	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10	12358262	61563052	73443464	44	3765											
ZBTB3	79842	mdanderson.org	37	chr11	62520426	62520426	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaatgaaactgctgagatGccagaagagaagtagtttgt	11	6	0	4	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_024784	exon2	c.C861A	p.G287G	TGAGATGCCAGAA		51	3	0.06	91	0	0				7	0	0				T	62520426	G	T	62520426	2	4	54	1	0	0	0	0	0	0	0	1	17592	1306	46	2		2	ZBTB3	11	62520426	Silent	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	957374	62520426	72486090	45	3766											
ANKRD13D	338692	mdanderson.org	37	chr11	67058987	67058987	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaagtgggagttcaccaGctggggtgagtggggacctc	18	7	1	2	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_207354	exon4	c.G392T	p.S131I	TCACCAGCTGGGG		42	3	0.07	47	0	0				45	0	0				T	67058987	G	T	67058987	3	4	54	1	0	0	0	0	1	0	0	0	640	971	34	2	406	2	ANKRD13D	11	67058987	Missense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	4538561	67058987	67947529	46	3767											
CNTN5	53942	bcgsc.ca	37	chr11	99944948	99944948	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caaagaccaagaagttgtcaTagagtgcaaaccccaaggct	9	10	1	3	rs200782641	bycluster	TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	CNTN5	NM_001243270	exon12	c.T1502C	p.I501T	TTGTCATAGAGTG		178	0	0	503	0	0		324		0	0					C	99944948	T	C	99944948	3	2	54	1	0	0	0	0	1	0	0	0	3667	1406	49	4	1544	4	CNTN5	11	99944948	Missense_Mutation	SNP	T	TCGA-2G-AAHP-01A-12D-A42Y-10	32885961	99944948	35061568	47	3768											
NNMT	4837	mdanderson.org	37	chr11	114168839	114168839	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccagaggcctttgactgGtccccagtggtgacctatgt	13	11	0	3	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_006169	exon2	c.G321T	p.W107C	TGACTGGTCCCCA		37	3	0.08	96	0	0				20	0	0				T	114168839	G	T	114168839	3	4	54	1	0	0	0	0	1	0	0	0	10555	1270	44	3	327	3	NNMT	11	114168839	Missense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	14223891	114168839	20837677	48	3769											
UBE4A	9354	mdanderson.org	37	chr11	118252157	118252157	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catttttctccgccgctttgCcgatgacattttggagacat	8	11	1	2	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_004788	exon12	c.C1949T	p.A650V	GCTTTGCCGATGA		48	3	0.06	129	0	0				0	0					T	118252157	C	T	118252157	3	4	54	1	0	0	0	0	1	0	0	0	16942	739	26	2	1991	2	UBE4A	11	118252157	Missense_Mutation	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10	4083318	118252157	16754359	49	3770											
NTM	50863	broad.mit.edu	37	chr11	132180057	132180057	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtgtccccgtgggacaaaAggggacactgcagtgtgaag	16	8	0	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	NTM	NM_001144059	exon5	c.A713G	p.K238R	GACAAAAGGGGAC		105	4	0.04	307	0	0		253		0	0					G	132180057	A	G	132180057	3	3	54	1	0	0	0	0	1	0	0	0	10746	72	3	4	817	4	NTM	11	132180057	Missense_Mutation	SNP	A	TCGA-2G-AAHP-01A-12D-A42Y-10	13927900	132180057	2826459	50	3771											
KRAS	3845	bcgsc.ca	37	chr12	25380275	25380275	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcattgcactgtactcctcTtgacctgctgtgtcgagaat	8	12	2	2	rs17851045	bycluster	TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	KRAS_ENST00000256078,colon,carcinoma,0,429	KRAS	NM_004985	exon3	c.A183T	p.Q61H	CTCCTCTTGACCT		193	0	0	126	0	0		30930	429	115	0	0				A	25380275	T	A	25380275	3	1	54	1	0	0	0	0	1	0	0	0	8480	1606	56	5	519	5	KRAS	12	25380275	Missense_Mutation	SNP	T	TCGA-2G-AAHP-01A-12D-A42Y-10		25380275	108471620	51	3772											
BICD1	636	broad.mit.edu	37	chr12	32369349	32369349	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggtcactaatgtacagGcagaaaacgagaggctcacc	11	10	2	2	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	BICD1	NM_001714	exon2	c.G382A	p.A128T	GTACAGGCAGAAA		205	4	0.02	116	0	0		89		123	0	0				A	32369349	G	A	32369349	3	1	54	1	0	0	0	0	1	0	0	0	1427	1203	42	2	388	2	BICD1	12	32369349	Missense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	6989074	32369349	101482546	52	3773											
FGD4	121512	bcgsc.ca	37	chr12	32786595	32786599	+	Frame_Shift_Del	DEL	AAGAA	AAGAA	-													aagtggattcacagacagtgAagaaaagaaaagaaaaggaa					novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	AAGAA	AAGAA					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	FGD4	NM_139241	exon15	c.1874_1878del	p.625_626del	ACAGTGAAGAAAA		215	0	0	116	0	0		86		38	0	0				-	32786599	AAGAA	-	32786595	7	5	54	1	0	1	0	1	0	0	0	0	5867	246	9	0	1924	0	FGD4	12	32786595	Frame_Shift_Del	DEL	AAGAA	TCGA-2G-AAHP-01A-12D-A42Y-10	417246	32786595	101065300	53	3774											
NELL2	4753	bcgsc.ca	37	chr12	45173782	45173782	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctgacttcattccgatggCcactactttccagttccagg	8	13	2	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	NELL2_ENST00000437801,NS,carcinoma,-1,2	NELL2	NM_001145107	exon5	c.G509A	p.G170D	CGATGGCCACTAC		217	0	0	177	0	0		286	2	1	0	0				T	45173782	C	T	45173782	3	4	54	1	0	0	0	0	1	0	0	0	10380	739	26	2	2159	2	NELL2	12	45173782	Missense_Mutation	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10	12387187	45173782	88678113	54	3775											
MYO1A	4640	mdanderson.org	37	chr12	57432204	57432204	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcatgtcacctgatgtaGttggggctcttggaatacag	12	9	2	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_005379	exon17	c.C1752A	p.N584K	GATGTAGTTGGGG		79	5	0.06	65	0	0				2	0	0				T	57432204	G	T	57432204	3	4	54	1	0	0	0	0	1	0	0	0	10115	1020	36	3	1427	3	MYO1A	12	57432204	Missense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	12258422	57432204	76419691	55	3776											
FRS2	10818	bcgsc.ca	37	chr12	69964184	69964184	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tacagacacagaactgatttTatacacccgcaaacgtgact	6	11	0	4	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	FRS2	NM_001042555	exon7	c.T140C	p.L47S	TGATTTTATACAC		228	0	0	179	0	0		88		18	0	0				C	69964184	T	C	69964184	3	2	54	1	0	0	0	0	1	0	0	0	6095	1764	61	4	146	4	FRS2	12	69964184	Missense_Mutation	SNP	T	TCGA-2G-AAHP-01A-12D-A42Y-10	12531980	69964184	63887711	56	3777											
E2F7	144455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr12	77449732	77449732	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tatctgggctggcagcactaAtgagcatcttcaggttagct	11	9	3	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_203394	exon3	c.T272G	p.I91S	GCACTAATGAGCA		224	43	0.19	151	0	0				7	3	0.43				C	77449732	A	C	77449732	3	2	54	1	0	0	0	0	1	0	0	0	4898	101	4	4	2507	4	E2F7	12	77449732	Missense_Mutation	SNP	A	TCGA-2G-AAHP-01A-12D-A42Y-10	7485548	77449732	56402163	57	3778											
C12orf65	91574	bcgsc.ca	37	chr12	123741505	123741505	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaaacaagaaaggaaaaAaagagcaaaggaaaccctgg	10	5	0	2	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	C12orf65	NM_001194995	exon3	c.A428C	p.K143T	GGAAAAAAAGAGC		207	0	0	199	0	0		15		127	0	0				C	123741505	A	C	123741505	3	2	54	1	0	0	0	0	1	0	0	0	1714	14	1	4	434	4	C12orf65	12	123741505	Missense_Mutation	SNP	A	TCGA-2G-AAHP-01A-12D-A42Y-10	46291773	123741505	10110390	58	3779											
SCARB1	949	mdanderson.org	37	chr12	125270941	125270941	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgacagggaccagcagcaGgacgcagcccagcgccagga	15	13	0	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_005505	exon11	c.C1363A	p.L455M	GCAGCAGGACGCA		51	3	0.06	49	0	0				35	0	0				T	125270941	G	T	125270941	3	4	54	1	0	0	0	0	1	0	0	0	13933	991	35	3	298	3	SCARB1	12	125270941	Missense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	1529436	125270941	8580954	59	3780											
NAA16	79612	bcgsc.ca	37	chr13	41894924	41894924	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attttgagggatctctcactGttgcagatccaaatgagaga	10	7	2	4	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	NAA16	NM_001110798	exon4	c.G366T	p.L122L	CTCACTGTTGCAG		75	1	0.01	96	0	0		74		5	0	0				T	41894924	G	T	41894924	2	4	54	1	0	0	0	0	0	0	0	1	10166	1364	48	3		3	NAA16	13	41894924	Silent	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10		41894924	73274954	60	3781											
SCEL	8796	mdanderson.org	37	chr13	78142455	78142455	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtccatgtttagatcactgGaagtaacaaagttgtatgta	9	5	1	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001160706	exon7	c.G385T	p.E129X	TCACTGGAAGTAA		46	3	0.07	92	0	0				0	0					T	78142455	G	T	78142455	4	4	54	1	0	0	0	0	0	1	0	0	13940	1175	41	3	407	3	SCEL	13	78142455	Nonsense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	36247531	78142455	37027423	61	3782											
EFNB2	1948	mdanderson.org	37	chr13	107145463	107145463	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaccgggtgcccgtagtcGccgctgaccttctcgtagtg	12	14	1	1	rs7995379	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	EFNB2,NS,carcinoma,-2,2	EFNB2	NM_004093	exon5	c.C927A	p.G309G	GTAGTCGCCGCTG		46	2	0.04	67	0	0		-2	2	3	0	0				T	107145463	G	T	107145463	2	4	54	1	0	0	0	0	0	0	0	1	4982	1074	38	1		1	EFNB2	13	107145463	Silent	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	29003008	107145463	8024415	62	3783											
ATG2B	55102	broad.mit.edu	37	chr14	96781835	96781835	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggccatcttcttcagaGgaataaatagtaggttccaa	9	8	3	2	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	ATG2B	NM_018036	exon22	c.C3447A	p.S1149S	TTCAGAGGAATAA		390	5	0.01	346	1	0.0028901734		169		3	0	0				T	96781835	G	T	96781835	2	4	54	1	0	0	0	0	0	0	0	1	1093	987	35	3		3	ATG2B	14	96781835	Silent	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10		96781835	10567705	63	3784											
ZNF592	9640	broad.mit.edu	37	chr15	85345188	85345188	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caccaaaaggcacaagtcccTttttcagtgcgcgaaatgta	8	11	1	0	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	ZNF592	NM_014630	exon11	c.T3368C	p.L1123P	AGTCCCTTTTTCA		320	5	0.02	393	2	0.0050890585		95		47	0	0				C	85345188	T	C	85345188	3	2	54	1	0	0	0	0	1	0	0	0	18078	1609	56	4	3398	4	ZNF592	15	85345188	Missense_Mutation	SNP	T	TCGA-2G-AAHP-01A-12D-A42Y-10		85345188	17186204	64	3785											
ZC3H7A	29066	bcgsc.ca	37	chr16	11859005	11859005	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctaggcttatgatcaaaaCatttctggaatagagagaga	9	5	3	3	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	ZC3H7A	NM_014153	exon15	c.G1724C	p.C575S	TCAAAACATTTCT		123	0	0	112	0	0		72		11	0	0				G	11859005	C	G	11859005	3	3	54	1	0	0	0	0	1	0	0	0	17630	478	17	5	1227	5	ZC3H7A	16	11859005	Missense_Mutation	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10		11859005	78495748	65	3786											
HIRIP3	8479	broad.mit.edu	37	chr16	30005338	30005338	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctctccccctgggggccTccccctgcctcgctgtcact	8	21	2	0	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	HIRIP3	NM_003609	exon4	c.A1128G	p.G376G	GGGGCCTCCCCCT		120	6	0.05	167	0	0		45		37	0	0				C	30005338	T	C	30005338	2	2	54	1	0	0	0	0	0	0	0	1	7161	1538	54	4		4	HIRIP3	16	30005338	Silent	SNP	T	TCGA-2G-AAHP-01A-12D-A42Y-10	18146333	30005338	60349415	66	3787											
GPT2	84706	bcgsc.ca	37	chr16	46918656	46918656	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcggcggcgctggtccggcGgggctgtggtccccggaccc	20	15	0	0	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	GPT2	NM_133443	exon2	c.G29C	p.R10P	TCCGGCGGGGCTG		53	0	0	40	0	0		40		9	0	0				C	46918656	G	C	46918656	3	2	54	1	0	0	0	0	1	0	0	0	6778	1116	39	5	31	5	GPT2	16	46918656	Missense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	16913318	46918656	43436097	67	3788											
SGSM2	9905	mdanderson.org	37	chr17	2266157	2266157	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actacgagaaggaggcactgCtggcagaccctgtgttcggc	14	11	0	2	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001098509	exon5	c.C484T	p.L162L	GCACTGCTGGCAG		45	3	0.07	70	0	0				9	0	0				T	2266157	C	T	2266157	2	4	54	1	0	0	0	0	0	0	0	1	14276	796	28	2		2	SGSM2	17	2266157	Silent	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10		2266157	78929053	68	3789											
PIGW	284098	mdanderson.org	37	chr17	34893834	34893834	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgatggtagtggcacacGggttggtctattaaatgcca	12	8	1	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_178517	exon2	c.G884T	p.R295L	GCACACGGGTTGG		38	3	0.08	55	0	0				8	0	0				T	34893834	G	T	34893834	3	4	54	1	0	0	0	0	1	0	0	0	11949	1116	39	1	886	1	PIGW	17	34893834	Missense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	32627677	34893834	46301376	69	3790											
WNT3	7473	broad.mit.edu	37	chr17	44851046	44851046	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagtacctttgtcgaggaCgggcccaaagatggccaggc	15	11	0	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	WNT3	NM_030753	exon2	c.C310A	p.R104S	CGAGGACGGGCCC		156	5	0.03	230	0	0		34		10	0	0				T	44851046	C	T	44851046	3	4	54	1	0	0	0	0	1	0	0	0	17447	536	19	1	769	1	WNT3	17	44851046	Missense_Mutation	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10	9957212	44851046	36344164	70	3791											
CDC27	996	mdanderson.org	37	chr17	45219803	45219803	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaattttttgctattctcCtgtaaaagggaagaaatttc	6	5	1	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001256	exon12	c.1171-1G>T	.	ATTCTCCTGTAAA		39	3	0.08	53	0	0				2	0	0				A	45219803	C	A	45219803	5	1	54	1	0	0	0	0	0	0	1	0	3088	695	24	3	1340	3	CDC27	17	45219803	Splice_Site	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10	368757	45219803	35975407	71	3792											
SNX11	29916	mdanderson.org	37	chr17	46196070	46196070	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatgtggctgcacaggcctGttcctgaacttcctgggaag	12	11	1	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_013323	exon5	c.G235T	p.V79F	AGGCCTGTTCCTG		48	3	0.06	72	0	0				24	0	0				T	46196070	G	T	46196070	3	4	54	1	0	0	0	0	1	0	0	0	14935	1377	48	3	249	3	SNX11	17	46196070	Missense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	976267	46196070	34999140	72	3793											
ST6GALNAC1	55808	bcgsc.ca	37	chr17	74623260	74623260	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggctcccagcggggaggCtggccaggagcagctgctgc	19	12	0	0	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	ST6GALNAC1	NM_018414	exon4	c.G1061A	p.S354N	GGGAGGCTGGCCA		53	0	0	69	0	0		42		20	0	0				T	74623260	C	T	74623260	3	4	54	1	0	0	0	0	1	0	0	0	15278	797	28	2	765	2	ST6GALNAC1	17	74623260	Missense_Mutation	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10	28427190	74623260	6571950	73	3794											
RNF213	57674	bcgsc.ca	37	chr17	78321501	78321501	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcaaccagtactacgtccaCctcggcggccagaagtacgt	9	15	1	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	RNF213	NM_001256071	exon29	c.C9366T	p.H3122H	CGTCCACCTCGGC		118	0	0	161	0	0		766		6	0	0				T	78321501	C	T	78321501	2	4	54	1	0	0	0	0	0	0	0	1	13528	506	18	3		3	RNF213	17	78321501	Silent	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10	3698241	78321501	2873709	74	3795											
CXXC1	30827	mdanderson.org	37	chr18	47810351	47810351	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgttccatttcctgaaggcgAgtgcgggcactctgctgctc	12	13	1	1	rs7228084	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001101654	exon10	c.T1338A	p.T446T	AAGGCGAGTGCGG		54	2	0.04	73	0	0				292	0	0				T	47810351	A	T	47810351	2	4	54	1	0	0	0	0	0	0	0	1	4120	291	11	5		5	CXXC1	18	47810351	Silent	SNP	A	TCGA-2G-AAHP-01A-12D-A42Y-10		47810351	30266897	75	3796											
DNMT1	1786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr19	10254526	10254526	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacagaagatctctttgatcCggccaattcggtagggctca	11	10	2	3	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001130823	exon29	c.G3032A	p.R1011Q	TTGATCCGGCCAA		337	72	0.21	277	0	0				126	29	0.23				T	10254526	C	T	10254526	3	4	54	1	0	0	0	0	1	0	0	0	4702	652	23	1	1918	1	DNMT1	19	10254526	Missense_Mutation	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10		10254526	48874457	76	3797											
ANKLE1	126549	broad.mit.edu	37	chr19	17397494	17397501	+	Frame_Shift_Del	DEL	TGTGTGTT	TGTGTGTT	-													tgtgtgtgtgtgtgtgtgtgTgtgtgtttgtgtgtgtgtgt					rs59660863	alternate_allele	TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	TGTGTGTT	TGTGTGTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	ANKLE1	.	.	.	.	TGTGTGTGTGTGT		19	10	0.53	18	0	0		27		3	0	0				-	17397501	TGTGTGTT	-	17397494	7	5	54	1	0	1	0	1	0	0	0	0	628	1711	59	0		0	ANKLE1	19	17397494	Frame_Shift_Del	DEL	TGTGTGTT	TCGA-2G-AAHP-01A-12D-A42Y-10	7142968	17397494	41731489	77	3798											
CCDC124	115098	mdanderson.org	37	chr19	18054150	18054150	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggagggcagcgtggagGcgcgcaccatcgaggacgcc	19	11	0	0	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001136203	exon4	c.G430T	p.A144S	GTGGAGGCGCGCA		32	3	0.09	21	0	0				411	0	0				T	18054150	G	T	18054150	3	4	54	1	0	0	0	0	1	0	0	0	2778	1203	42	2	440	2	CCDC124	19	18054150	Missense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	656656	18054150	41074833	78	3799											
GATAD2A	54815	broad.mit.edu	37	chr19	19606951	19606951	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccagtgtgcagattcagGgacagaggatcatccagcag	13	10	2	2	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	GATAD2A_ENST00000360315,right_lower_lobe,carcinoma,0,2	GATAD2A	NM_017660	exon7	c.G847T	p.G283X	ATTCAGGGACAGA		100	5	0.05	84	0	0		81	2	238	0	0				T	19606951	G	T	19606951	4	4	54	1	0	0	0	0	0	1	0	0	6299	1233	43	3	869	3	GATAD2A	19	19606951	Nonsense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	1552801	19606951	39522032	79	3800											
ZNF708	7562	mdanderson.org	37	chr19	21476977	21476977	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tatgtttagtaaggtttgagGaccggttaaaagctttgcca	11	5	0	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_021269	exon4	c.C791A	p.S264Y	TTTGAGGACCGGT		30	3	0.1	43	0	0				6	0	0				T	21476977	G	T	21476977	3	4	54	1	0	0	0	0	1	0	0	0	18167	1174	41	3	904	3	ZNF708	19	21476977	Missense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	1870026	21476977	37652006	80	3801											
LYPD3	27076	mdanderson.org	37	chr19	43967294	43967294	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacctgccgtcaaggtgacGttgccgtcgaagcagccctt	11	14	2	1	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_014400	exon4	c.C528T	p.N176N	GGTGACGTTGCCG		39	3	0.08	53	0	0				26	0	0				A	43967294	G	A	43967294	2	1	54	1	0	0	0	0	0	0	0	1	9156	1136	40	1		1	LYPD3	19	43967294	Silent	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	22490317	43967294	15161689	81	3802											
RBL1	5933	broad.mit.edu	37	chr20	35627253	35627253	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcgtttggcaggggattctGcatcactatcgatggctatt	12	9	2	0	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	RBL1	NM_002895	exon22	c.C3116A	p.A1039E	GATTCTGCATCAC		167	5	0.03	132	1	0.0075757576		114		16	0	0				T	35627253	G	T	35627253	3	4	54	1	0	0	0	0	1	0	0	0	13160	1319	46	2	94	2	RBL1	20	35627253	Missense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10		35627253	27398267	82	3803											
LAMA5	3911	bcgsc.ca	37	chr20	60886012	60886012	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ctctgggcgcggagccgagtCccgaggccttccatctgtgc	14	15	2	0	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	LAMA5	NM_005560	exon74	c.G10227T	p.G3409G	CCGAGTCCCGAGG		91	0	0	74	0	0		268		148	0	0				A	60886012	C	A	60886012	2	1	54	1	0	0	0	0	0	0	0	1	8647	842	30	3		3	LAMA5	20	60886012	Silent	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10	25258759	60886012	2139508	83	3804											
BAGE	85319	broad.mit.edu	37	chr21	11065359	11065360	+	RNA	INS	-	-	T													tcactattagatttttaagaINStttttttttacacattatac					rs147270665		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	.	.	.	.	TTTAAGATTTTTT		6	2	0.33	6	0	0				0	0					T	11065360	-	T	11065359	6	5	54	0	1	1	1	0	0	0	0	0	1289	348	12	0		0	BAGE	21	11065359	RNA	INS	-	TCGA-2G-AAHP-01A-12D-A42Y-10		11065359	37064536	84	3805											
BRWD1	54014	bcgsc.ca	37	chr21	40582800	40582800	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctagttccttacactgtttcTtccagttgctttcaacatag	5	11	2	0	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	BRWD1	NM_018963	exon35	c.A3956G	p.K1319R	TGTTTCTTCCAGT		124	0	0	145	0	0		325		6	0	0				C	40582800	T	C	40582800	3	2	54	1	0	0	0	0	1	0	0	0	1527	1609	56	4	3277	4	BRWD1	21	40582800	Missense_Mutation	SNP	T	TCGA-2G-AAHP-01A-12D-A42Y-10	29517441	40582800	7547095	85	3806											
BRD1	23774	mdanderson.org	37	chr22	50217264	50217264	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acggccaggttgcacatgtcGcagaagaggatcacgttgct	13	10	1	2	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_014577	exon1	c.C702T	p.C234C	CATGTCGCAGAAG		51	3	0.06	38	0	0				13	0	0				A	50217264	G	A	50217264	2	1	54	1	0	0	0	0	0	0	0	1	1503	1079	38	1		1	BRD1	22	50217264	Silent	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10		50217264	1087302	86	3807											
MIOX	55586	mdanderson.org	37	chr22	50927708	50927708	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctcgacagggtcctcatGtcctggggccatgatggtga	16	10	1	2	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_017584	exon7	c.G570T	p.M190I	CCTCATGTCCTGG		47	3	0.06	30	0	0				0	0					T	50927708	G	T	50927708	3	4	54	1	0	0	0	0	1	0	0	0	9637	1377	48	3	596	3	MIOX	22	50927708	Missense_Mutation	SNP	G	TCGA-2G-AAHP-01A-12D-A42Y-10	710444	50927708	376858	87	3808											
CNKSR2	22866	bcgsc.ca	37	chrX	21519642	21519642	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttatattaaattcagtcacCtgcagatcggtgcaagaaaa	7	7	2	2	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	CNKSR2	NM_001168647	exon8	c.C746T	p.P249L	AGTCACCTGCAGA		234	0	0	206	0	0		158		0	0					T	21519642	C	T	21519642	3	4	54	1	0	0	0	0	1	0	0	0	3630	681	24	3	776	3	CNKSR2	23	21519642	Missense_Mutation	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10		21519642	133750918	88	3809											
ZXDB	158586	mdanderson.org	37	chrX	57618621	57618621	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgcgccgcctcctgctgcTccggggcccccaagatggcg	13	19	0	1	rs368802496		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_007157	exon1	c.T140C	p.L47P	TGCTGCTCCGGGG		12	2	0.17	17	0	0				0	0					C	57618621	T	C	57618621	3	2	54	1	0	0	0	0	1	0	0	0	18290	1551	54	4	142	4	ZXDB	23	57618621	Missense_Mutation	SNP	T	TCGA-2G-AAHP-01A-12D-A42Y-10	36098979	57618621	97651939	89	3810											
DOCK11	139818	bcgsc.ca	37	chrX	117680026	117680026	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agaagggtggtgtgataaaaCaaggctggttgcataaagca	14	4	0	2	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	DOCK11	NM_144658	exon6	c.C505G	p.Q169E	ATAAAACAAGGCT		59	0	0	73	0	0		185		1	0	0				G	117680026	C	G	117680026	3	3	54	1	0	0	0	0	1	0	0	0	4713	479	17	5	527	5	DOCK11	23	117680026	Missense_Mutation	SNP	C	TCGA-2G-AAHP-01A-12D-A42Y-10	60061405	117680026	37590534	90	3811											
PRDM2	7799	broad.mit.edu	37	chr1	14105106	14105106	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgggggaagaggaggaggaGgaagaggaggaggatgaaga	23	0	0	4	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	PRDM2	NM_015866	exon8	c.G816A	p.E272E	GGAGGAGGAAGAG		193	5	0.03	148	0	0		147		7	0	0				A	14105106	G	A	14105106	2	1	55	1	0	0	0	0	0	0	0	1	12509	991	35	3		3	PRDM2	1	14105106	Silent	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10		14105106	235145515	1	3812											
C1orf94	84970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	34643423	34643423	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtggttgtgttctagccctGggtggacagaggggcttcca	17	8	1	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001134734	exon1	c.G33A	p.L11L	AGCCCTGGGTGGA		99	20	0.2	75	0	0				0	0					A	34643423	G	A	34643423	2	1	55	1	0	0	0	0	0	0	0	1	2085	1335	47	3		3	C1orf94	1	34643423	Silent	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	20538317	34643423	214607198	2	3813											
ELAVL4	1996	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	50642764	50642765	+	Frame_Shift_Del	DEL	AG	AG	-													ttttaatatttccacaggacAgagtttagggtatggatttg					novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	AG	AG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	ELAVL4_ENST00000357083,NS,carcinoma,0,2	ELAVL4	NM_001144775	exon3	c.304_305del	p.102_102del	CAGGACAGAGTTT		73	13	0.18	72	0	0		124		0	0					-	50642765	AG	-	50642764	7	5	55	1	0	1	0	1	0	0	0	0	5080	188	7	0	363	0	ELAVL4	1	50642764	Frame_Shift_Del	DEL	AG	TCGA-2G-AAHT-01A-11D-A42Y-10	15999341	50642764	198607857	3	3814											
PRPF38B	55119	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	109241987	109241989	+	In_Frame_Del	DEL	GCA	GCA	-													ccgggggttagaacgcaggcGcagcagaagtagggaaaggc					novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	GCA	GCA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	PRPF38B	NM_018061	exon6	c.985_987del	p.329_329del	GCAGGCGCAGCAG		184	43	0.23	156	0	0		55		212	0	0				-	109241989	GCA	-	109241987	7	5	55	1	0	1	0	1	0	0	0	0	12619	1087	38	0	1008	0	PRPF38B	1	109241987	In_Frame_Del	DEL	GCA	TCGA-2G-AAHT-01A-11D-A42Y-10	58599223	109241987	140008634	4	3815											
FLG2	388698	bcgsc.ca	37	chr1	152327658	152327658	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgttgtccaaagccagaTgtctgtcccgaacttgaccc	9	13	1	2	rs12724005	byhapmap	TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	FLG2	NM_001014342	exon3	c.A2604T	p.T868T	GCCAGATGTCTGT		47	9	0.19	86	1	0.011627907		431		0	0					A	152327658	T	A	152327658	2	1	55	1	0	0	0	0	0	0	0	1	5955	1451	51	5		5	FLG2	1	152327658	Silent	SNP	T	TCGA-2G-AAHT-01A-11D-A42Y-10	43085671	152327658	96922963	5	3816											
PLEKHA6	22874	mdanderson.org	37	chr1	204210552	204210552	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcattccttcttaccactGctgatggggtcacctcatca	8	13	4	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_014935	exon17	c.C2360A	p.A787E	ACCACTGCTGATG		54	3	0.06	39	0	0				1	0	0				T	204210552	G	T	204210552	3	4	55	1	0	0	0	0	1	0	0	0	12107	1319	46	2	810	2	PLEKHA6	1	204210552	Missense_Mutation	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	51882894	204210552	45040069	6	3817											
CEBPZ	10153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	37450403	37450403	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ccacatataaatggtggcatCtgttgacaagtaacttgaag	9	7	1	2	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_005760	exon3	c.G1791C	p.Q597H	TGGCATCTGTTGA		146	23	0.16	116	0	0				265	61	0.23				G	37450403	C	G	37450403	3	3	55	1	0	0	0	0	1	0	0	0	3226	912	32	5	1429	5	CEBPZ	2	37450403	Missense_Mutation	SNP	C	TCGA-2G-AAHT-01A-11D-A42Y-10		37450403	205748970	7	3818											
EPM2AIP1	9852	mdanderson.org	37	chr3	37034271	37034271	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggcagagcccgaggcctgCacgagcagctctctcttcag	13	15	3	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_014805	exon1	c.G298T	p.A100S	GGCCTGCACGAGC		53	3	0.06	30	0	0				1	0	0				A	37034271	C	A	37034271	3	1	55	1	0	0	0	0	1	0	0	0	5212	710	25	2	1529	2	EPM2AIP1	3	37034271	Missense_Mutation	SNP	C	TCGA-2G-AAHT-01A-11D-A42Y-10		37034271	160988159	8	3819											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	55593605	55593605	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cccatgtatgaagtacagtgGaaggttgttgaggagataaa	13	4	0	3	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	KIT,NS,germ_cell_tumour,+2,59	KIT	NM_000222	exon11	c.G1671T	p.W557C	ACAGTGGAAGGTT		266	28	0.11	122	0	0		2	59	622	100	0.16				T	55593605	G	T	55593605	3	4	55	1	0	0	0	0	1	0	0	0	8371	1183	41	3	1713	3	KIT	4	55593605	Missense_Mutation	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10		55593605	135560671	9	3820											
MTHFD2L	441024	broad.mit.edu	37	chr4	75067012	75067012	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaaaaaatgtggttgtgGctggaagatccaagaacgta	13	4	0	2	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	MTHFD2L	NM_001144978	exon5	c.G637T	p.A213S	GTTGTGGCTGGAA		138	4	0.03	143	0	0		41		1	0	0				T	75067012	G	T	75067012	3	4	55	1	0	0	0	0	1	0	0	0	9977	1203	42	2	655	2	MTHFD2L	4	75067012	Missense_Mutation	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	19473407	75067012	116087264	10	3821											
DSPP	1834	bcgsc.ca	37	chr4	88537114	88537114	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgacagcagcgatagcagCgacagcagcgacagcagcga	14	11	0	1	rs369973717		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	DSPP	NM_014208	exon5	c.C3300T	p.S1100S	TAGCAGCGACAGC		28	8	0.29	32	0	0		174		0	0					T	88537114	C	T	88537114	2	4	55	1	0	0	0	0	0	0	0	1	4808	767	27	1		1	DSPP	4	88537114	Silent	SNP	C	TCGA-2G-AAHT-01A-11D-A42Y-10	13470102	88537114	102617162	11	3822											
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	134072091	134072091	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	taccagagaactctcccccaGgcactctcgtgatccagctc	7	17	2	2	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_032961	exon1	c.G796C	p.G266R	CCCCCAGGCACTC		50	9	0.18	73	0	0				0	0					C	134072091	G	C	134072091	3	2	55	1	0	0	0	0	1	0	0	0	11553	1000	35	5	798	5	PCDH10	4	134072091	Missense_Mutation	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	45534977	134072091	57082185	12	3823											
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	134073757	134073757	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccacaaccagaattactgctAtcaggtatgcctgacccctg	7	14	1	2	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_032961	exon1	c.A2462T	p.Y821F	ACTGCTATCAGGT		77	12	0.16	109	0	0				1	1	1				T	134073757	A	T	134073757	3	4	55	1	0	0	0	0	1	0	0	0	11553	449	16	5	2464	5	PCDH10	4	134073757	Missense_Mutation	SNP	A	TCGA-2G-AAHT-01A-11D-A42Y-10	1666	134073757	57080519	13	3824											
MAN2A1	4124	mdanderson.org	37	chr5	109103372	109103372	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttaaaaaacactttgcactGcataaaacattggagttttt	6	6	0	0	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_002372	exon6	c.G972A	p.L324L	TGCACTGCATAAA		55	4	0.07	53	0	0				4	0	0				A	109103372	G	A	109103372	2	1	55	1	0	0	0	0	0	0	0	1	9263	1306	46	2		2	MAN2A1	5	109103372	Silent	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10		109103372	71811888	14	3825											
FBN2	2201	mdanderson.org	37	chr5	127873220	127873220	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggctgaggctggccggccGtgccctgcgcccagagcacc	16	16	0	2	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001999	exon1	c.C77T	p.T26M	CCGGCCGTGCCCT		24	3	0.13	50	0	0				0	0					A	127873220	G	A	127873220	3	1	55	1	0	0	0	0	1	0	0	0	5735	1145	40	1	8921	1	FBN2	5	127873220	Missense_Mutation	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	18769848	127873220	53042040	15	3826											
HLA-DOA	3111	broad.mit.edu	37	chr6	32975873	32975873	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgatgccggccagcccgcccTgcgggtcaaagcgggcaaag	15	15	1	0	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	HLA-DOA	NM_002119	exon2	c.A248G	p.Q83R	CCGCCCTGCGGGT		107	4	0.04	69	1	0.0144927536		22		31	0	0				C	32975873	T	C	32975873	3	2	55	1	0	0	0	0	1	0	0	0	7240	1580	55	4	520	4	HLA-DOA	6	32975873	Missense_Mutation	SNP	T	TCGA-2G-AAHT-01A-11D-A42Y-10		32975873	138139194	16	3827											
KLHL31	401265	mdanderson.org	37	chr6	53516646	53516646	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgcagtgctcactcccaccTgcagcggcgccgcgtagctc	11	19	1	0	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001003760	exon3	c.A1655G	p.Q552R	CCCACCTGCAGCG		32	3	0.09	25	0	0				0	0					C	53516646	T	C	53516646	3	2	55	1	0	0	0	0	1	0	0	0	8427	1580	55	4	253	4	KLHL31	6	53516646	Missense_Mutation	SNP	T	TCGA-2G-AAHT-01A-11D-A42Y-10	20540773	53516646	117598421	17	3828											
RAC1	5879	broad.mit.edu	37	chr7	6441622	6441622	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagaagctgactcccatcAcctatccgcagggtctagcc	9	14	2	3	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	RAC1	NM_018890	exon6	c.A469G	p.T157A	CCCATCACCTATC		116	3	0.03	74	0	0		101		798	2	0				G	6441622	A	G	6441622	3	3	55	1	0	0	0	0	1	0	0	0	13025	159	6	4	491	4	RAC1	7	6441622	Missense_Mutation	SNP	A	TCGA-2G-AAHT-01A-11D-A42Y-10		6441622	152697041	18	3829											
GTF2I	2969	broad.mit.edu	37	chr7	74148279	74148279	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcagacatgagcttctgaAttcaacacgtgaagatttac	7	8	3	5	rs1135649		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	GTF2I,NS,carcinoma,0,7	GTF2I	NM_032999	exon16	c.A1319G	p.N440S	TTCTGAATTCAAC		638	6	0.01	415	1	0.0024096386		40	7	485	0	0				G	74148279	A	G	74148279	3	3	55	1	0	0	0	0	1	0	0	0	6907	101	4	4	1377	4	GTF2I	7	74148279	Missense_Mutation	SNP	A	TCGA-2G-AAHT-01A-11D-A42Y-10	67706657	74148279	84990384	19	3830											
SSPO	23145	mdanderson.org	37	chr7	149523792	149523792	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcacaatggcacgtgtgtgCctcccactgcctgcccctgc	10	17	0	0	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_198455	exon103	c.C14602T	p.P4868S	TGTGTGCCTCCCA		21	2	0.1	18	0	0				0	0					T	149523792	C	T	149523792	3	4	55	1	0	0	0	0	1	0	0	0	15244	739	26	2	15003	2	SSPO	7	149523792	Missense_Mutation	SNP	C	TCGA-2G-AAHT-01A-11D-A42Y-10	75375513	149523792	9614871	20	3831											
UBE3C	9690	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	157023941	157023941	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctactaatgaagggcttctgTaccccaacccggctgctcag	9	14	2	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	UBE3C	NM_014671	exon18	c.T2401C	p.Y801H	CTTCTGTACCCCA		221	46	0.21	145	1	0.0068965517		124		176	40	0.23				C	157023941	T	C	157023941	3	2	55	1	0	0	0	0	1	0	0	0	16941	1638	57	4	2471	4	UBE3C	7	157023941	Missense_Mutation	SNP	T	TCGA-2G-AAHT-01A-11D-A42Y-10	7500149	157023941	2114722	21	3832											
DUSP4	1846	mdanderson.org	37	chr8	29207399	29207399	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcggtgcgctcggcgttgcGgcgcagcgcctgcaccacca	15	16	0	0	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001394	exon1	c.C397T	p.R133C	CGTTGCGGCGCAG		10	2	0.2	10	0	0				3	0	0				A	29207399	G	A	29207399	3	1	55	1	0	0	0	0	1	0	0	0	4853	1116	39	1	967	1	DUSP4	8	29207399	Missense_Mutation	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10		29207399	117156623	22	3833											
AK3	50808	mdanderson.org	37	chr9	4741004	4741004	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcttcagctcgaagtgtgtAgtgatgcgcgacgacacggt	14	9	1	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001199852	exon1	c.T84C	p.T28T	GTGTGTAGTGATG		60	3	0.05	93	0	0				16	0	0				G	4741004	A	G	4741004	2	3	55	1	0	0	0	0	0	0	0	1	438	407	15	4		4	AK3	9	4741004	Silent	SNP	A	TCGA-2G-AAHT-01A-11D-A42Y-10		4741004	136472427	23	3834											
SIGMAR1	10280	mdanderson.org	37	chr9	34637553	34637553	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcccgctcaccagcgtactGccgcgccaactgcgctatct	9	18	2	0	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_147157	exon1	c.C142T	p.Q48X	CGTACTGCCGCGC		48	3	0.06	14	0	0				75	0	0				A	34637553	G	A	34637553	4	1	55	1	0	0	0	0	0	1	0	0	14370	1328	46	2	545	2	SIGMAR1	9	34637553	Nonsense_Mutation	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	29896549	34637553	106575878	24	3835											
RC3H2	54542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	125643061	125643061	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cattagggaagagtcttcatCtcttttggtaacctaaaaaa	7	7	3	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_018835	exon6	c.G772C	p.D258H	CTTCATCTCTTTT		86	15	0.17	88	0	0				48	20	0.42				G	125643061	C	G	125643061	3	3	55	1	0	0	0	0	1	0	0	0	13218	913	32	5	2945	5	RC3H2	9	125643061	Missense_Mutation	SNP	C	TCGA-2G-AAHT-01A-11D-A42Y-10	91005508	125643061	15570370	25	3836											
TTF1	7270	mdanderson.org	37	chr9	135277780	135277780	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagcaagtacctgaaatttGtctgttttaggctttcttgg	9	6	2	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_007344	exon2	c.C429A	p.D143E	AAATTTGTCTGTT		92	4	0.04	75	0	0				42	0	0				T	135277780	G	T	135277780	3	4	55	1	0	0	0	0	1	0	0	0	16779	1368	48	3	2328	3	TTF1	9	135277780	Missense_Mutation	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	9634719	135277780	5935651	26	3837											
PRKCQ	5588	bcgsc.ca;mdanderson.org	37	chr10	6470241	6470241	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atattctggtccatgctgttGatcagtgctctgtcggcaaa	10	9	3	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	PRKCQ	NM_006257	exon18	c.C2049A	p.I683I	GCTGTTGATCAGT		72	5	0.07	76	0	0		113		7	0	0				T	6470241	G	T	6470241	2	4	55	1	0	0	0	0	0	0	0	1	12566	1280	45	3		3	PRKCQ	10	6470241	Silent	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10		6470241	129064506	27	3838											
ALDH18A1	5832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	97370021	97370021	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacacacaggcactgtctacGtgctgcaggaagaactccgc	10	13	1	1	rs147842812		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_002860	exon17	c.C2139T	p.H713H	GTCTACGTGCTGC		99	35	0.35	86	0	0	0			303	200	0.66				A	97370021	G	A	97370021	2	1	55	1	0	0	0	0	0	0	0	1	486	1136	40	1		1	ALDH18A1	10	97370021	Silent	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	90899780	97370021	38164726	28	3839											
MUC2	4583	mdanderson.org	37	chr11	1092969	1092969	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	actacggtgaccccaaccccAacacccaccggcacacagac	6	20	0	2	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_002457	exon30	c.A4788T	p.P1596P	AACCCCAACACCC		38	3	0.08	36	0	0				0	0					T	1092969	A	T	1092969	2	4	55	1	0	0	0	0	0	0	0	1	10022	117	5	5		5	MUC2	11	1092969	Silent	SNP	A	TCGA-2G-AAHT-01A-11D-A42Y-10		1092969	133913547	29	3840											
MUC5B	727897	broad.mit.edu	37	chr11	1268816	1268816	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cataaccacggtggtgaccaCgggctgtgagccccagtgtg	14	12	0	2	rs71469871	bycluster	TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	MUC5B	NM_002458	exon31	c.C10706T	p.T3569M	TGACCACGGGCTG		224	4	0.02	245	1	0.0040816327		473		0	0					T	1268816	C	T	1268816	3	4	55	1	0	0	0	0	1	0	0	0	10026	536	19	1	10837	1	MUC5B	11	1268816	Missense_Mutation	SNP	C	TCGA-2G-AAHT-01A-11D-A42Y-10	175847	1268816	133737700	30	3841											
TRIM3	10612	mdanderson.org	37	chr11	6477339	6477339	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgtctgctaccacgatgCggccgctgctggctgcggac	14	14	1	0	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_006458	exon8	c.G1496A	p.R499H	ACGATGCGGCCGC		52	3	0.06	57	0	0				33	0	0				T	6477339	C	T	6477339	3	4	55	1	0	0	0	0	1	0	0	0	16564	768	27	1	762	1	TRIM3	11	6477339	Missense_Mutation	SNP	C	TCGA-2G-AAHT-01A-11D-A42Y-10	5208523	6477339	128529177	31	3842											
CCDC73	493860	hgsc.bcm.edu	37	chr11	32635415	32635415	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttgtggcttcagttacctGattctcatcaatctgattct	6	9	5	2	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001008391	exon16	c.A2449A	p.K817K	TTACCTGATTCTC		97	4	0.04	89	0	0				0	0					T	32635415	G	T	32635415	2	4	55	1	0	0	0	0	0	0	0	1	2866	1299	45	3		3	CCDC73	11	32635415	Silent	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	26158076	32635415	102371101	32	3843											
PELI3	246330	broad.mit.edu	37	chr11	66241455	66241455	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggccctcacaagctgcccaTccccctgcccaagccaggag	9	19	1	0	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	PELI3	.	.	.	.	TGCCCATCCCCCT		40	3	0.08	25	0	0		36		3	0	0				C	66241455	T	C	66241455	3	2	55	1	0	0	0	0	1	0	0	0	11769	1450	50	4		4	PELI3	11	66241455	Missense_Mutation	SNP	T	TCGA-2G-AAHT-01A-11D-A42Y-10	33606040	66241455	68765061	33	3844											
GPR152	390212	mdanderson.org	37	chr11	67219445	67219445	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggccagctggtagggcaGcctcaggaccacataggctg	15	12	1	0	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_206997	exon1	c.C751A	p.L251M	AGGGCAGCCTCAG		30	3	0.1	28	0	0				0	0					T	67219445	G	T	67219445	3	4	55	1	0	0	0	0	1	0	0	0	6697	962	34	2	665	2	GPR152	11	67219445	Missense_Mutation	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	977990	67219445	67787071	34	3845											
ARHGEF17	9828	broad.mit.edu	37	chr11	73066656	73066656	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaggatgctgtgcgtgtgGccaaggaggcgaggcctgcc	17	10	0	0	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	ARHGEF17	NM_014786	exon4	c.G3532T	p.A1178S	CGTGTGGCCAAGG		97	4	0.04	100	0	0		117		2	0	0				T	73066656	G	T	73066656	3	4	55	1	0	0	0	0	1	0	0	0	897	1203	42	2	3546	2	ARHGEF17	11	73066656	Missense_Mutation	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	5847211	73066656	61939860	35	3846											
WNT11	7481	mdanderson.org	37	chr11	75905775	75905775	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgggcccgggtggctcacCtgggacggggccgcaggagc	19	15	1	0	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_004626	exon3	c.G433T	p.G145C	GCTCACCTGGGAC		44	3	0.07	55	0	0				4	0	0				A	75905775	C	A	75905775	3	1	55	1	0	0	0	0	1	0	0	0	17443	681	24	3	643	3	WNT11	11	75905775	Missense_Mutation	SNP	C	TCGA-2G-AAHT-01A-11D-A42Y-10	2839119	75905775	59100741	36	3847											
C11orf82	220042	mdanderson.org	37	chr11	82639964	82639964	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atacattttttggtcttactGccactggtttgcacaggtaa	8	8	1	0	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_145018	exon4	c.G259T	p.A87S	CTTACTGCCACTG		55	3	0.05	63	0	0				28	0	0				T	82639964	G	T	82639964	3	4	55	1	0	0	0	0	1	0	0	0	1670	1319	46	2	265	2	C11orf82	11	82639964	Missense_Mutation	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	6734189	82639964	52366552	37	3848											
SLC37A2	219855	mdanderson.org	37	chr11	124955359	124955359	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acggccatcattgacggcacCggctccataggtctgtgact	11	13	2	2	rs144643816		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_198277	exon15	c.C1317T	p.T439T	CGGCACCGGCTCC		38	3	0.08	75	0	0	0			26	1	0.04				T	124955359	C	T	124955359	2	4	55	1	0	0	0	0	0	0	0	1	14652	639	23	1		1	SLC37A2	11	124955359	Silent	SNP	C	TCGA-2G-AAHT-01A-11D-A42Y-10	42315395	124955359	10051157	38	3849											
DYRK4	8798	broad.mit.edu	37	chr12	4722809	4722809	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agctgcctcaactggtagacGctcccaagaagtcagaggca	11	12	2	3	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	DYRK4,NS,carcinoma,0,1	DYRK4	NM_003845	exon13	c.G1453A	p.A485T	GTAGACGCTCCCA		267	5	0.02	132	0	0		75	1	235	0	0				A	4722809	G	A	4722809	3	1	55	1	0	0	0	0	1	0	0	0	4884	1087	38	1	1495	1	DYRK4	12	4722809	Missense_Mutation	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10		4722809	129129086	39	3850											
CELA1	1990	mdanderson.org	37	chr12	51723604	51723604	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaccaagcaatggagggggCccccagagtcaccctgcagg	13	14	2	1	rs201129231	bycluster	TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001971	exon7	c.G623C	p.G208A	AGGGGGCCCCCAG		37	4	0.11	40	0	0	0.001			1	0	0				G	51723604	C	G	51723604	3	3	55	1	0	0	0	0	1	0	0	0	3232	739	26	5	161	5	CELA1	12	51723604	Missense_Mutation	SNP	C	TCGA-2G-AAHT-01A-11D-A42Y-10	47000795	51723604	82128291	40	3851											
E2F7	144455	broad.mit.edu	37	chr12	77449827	77449827	+	Frame_Shift_Del	DEL	T	T	-													ggatttctttctggagtaaaTtttttttgcttcgataaatc					novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	E2F7	NM_203394	exon3	c.177delA	p.K59fs	AGTAAATTTTTTT		228	7	0.03	174	0	0		201		0	0					-	77449827	T	-	77449827	7	5	55	1	0	1	0	1	0	0	0	0	4898	1490	52	0	2602	0	E2F7	12	77449827	Frame_Shift_Del	DEL	T	TCGA-2G-AAHT-01A-11D-A42Y-10	25726223	77449827	56402068	41	3852											
RFX4	5992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	106995124	106995124	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcgacggcgccgttccactGgtaatgaccagggcccaggg	14	14	0	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001206691	exon1	c.G70A	p.E24K	TCCACTGGTAATG		170	36	0.21	159	0	0				0	0					A	106995124	G	A	106995124	3	1	55	1	0	0	0	0	1	0	0	0	13316	1362	47	3	119	3	RFX4	12	106995124	Missense_Mutation	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	29545297	106995124	26856771	42	3853											
FAM98B	283742	broad.mit.edu	37	chr15	38776833	38776833	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtggtggtggtggtggtggTggaggaggtggatatagaag	24	0	0	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	FAM98B_ENST00000397609,NS,carcinoma,0,2	FAM98B	NM_173611	exon8	c.T1275A	p.G425G	TGGTGGTGGAGGA		148	6	0.04	78	2	0.0256410256		53	2	1	0	0				A	38776833	T	A	38776833	2	1	55	1	0	0	0	0	0	0	0	1	5689	1683	59	5		5	FAM98B	15	38776833	Silent	SNP	T	TCGA-2G-AAHT-01A-11D-A42Y-10		38776833	63754559	43	3854											
DISP2	85455	broad.mit.edu	37	chr15	40650534	40650536	+	In_Frame_Del	DEL	CAG	CAG	-													cccacgggcatggacggtgaCagcagcagcagcagcggcgg					novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	CAG	CAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	DISP2	NM_033510	exon1	c.12_14del	p.4_5del	CGGTGACAGCAGC		6	2	0.33	4	0	0		86		1	0	0				-	40650536	CAG	-	40650534	7	5	55	1	0	1	0	1	0	0	0	0	4568	477	17	0	14	0	DISP2	15	40650534	In_Frame_Del	DEL	CAG	TCGA-2G-AAHT-01A-11D-A42Y-10	1873701	40650534	61880858	44	3855											
SPTBN5	51332	mdanderson.org	37	chr15	42185137	42185137	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggctgctgttctccaggaaGtgcacacgcaggcggccccg	14	15	1	0	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_016642	exon3	c.C234A	p.H78Q	CAGGAAGTGCACA		42	3	0.07	34	0	0				0	0					T	42185137	G	T	42185137	3	4	55	1	0	0	0	0	1	0	0	0	15177	1020	36	3	10949	3	SPTBN5	15	42185137	Missense_Mutation	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	1534603	42185137	60346255	45	3856											
ARIH1	25820	mdanderson.org	37	chr15	72767235	72767235	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcggcggcggcggcggCggtggtggtggcgggccggg	28	10	0	0	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_005744	exon1	c.C255T	p.G85G	CGGCGGCGGTGGT		75	6	0.08	62	2	0.0322580645				0	0					T	72767235	C	T	72767235	2	4	55	1	0	0	0	0	0	0	0	1	920	755	27	1		1	ARIH1	15	72767235	Silent	SNP	C	TCGA-2G-AAHT-01A-11D-A42Y-10	30582098	72767235	29764157	46	3857											
VPS33B	26276	broad.mit.edu	37	chr15	91545330	91545330	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttactctccacggctgtgAgggtgtccccgggggcctgc	14	14	1	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	VPS33B	NM_018668	exon18	c.T1355C	p.L452P	GCTGTGAGGGTGT		140	4	0.03	92	0	0		42		64	0	0				G	91545330	A	G	91545330	3	3	55	1	0	0	0	0	1	0	0	0	17261	304	11	4	522	4	VPS33B	15	91545330	Missense_Mutation	SNP	A	TCGA-2G-AAHT-01A-11D-A42Y-10	18778095	91545330	10986062	47	3858											
HBA2	3040	broad.mit.edu	37	chr16	223511	223511	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaccctggccgcccaccTccccgccgagttcacccctg	10	21	1	1	rs281860618	bycluster	TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	HBA2	NM_000517	exon3	c.T341C	p.L114P	CCCACCTCCCCGC		270	10	0.04	223	4	0.0179372197		3		7	0	0				C	223511	T	C	223511	3	2	55	1	0	0	0	0	1	0	0	0	7017	1551	54	4	351	4	HBA2	16	223511	Missense_Mutation	SNP	T	TCGA-2G-AAHT-01A-11D-A42Y-10		223511	90131242	48	3859											
WDR24	84219	mdanderson.org	37	chr16	736808	736808	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agagctcggccagtggccggCcagccagcgcataacgctca	13	15	1	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_032259	exon3	c.G1268A	p.G423D	GGCCGGCCAGCCA		44	3	0.07	54	0	0				25	0	0				T	736808	C	T	736808	3	4	55	1	0	0	0	0	1	0	0	0	17340	739	26	2	1132	2	WDR24	16	736808	Missense_Mutation	SNP	C	TCGA-2G-AAHT-01A-11D-A42Y-10	513297	736808	89617945	49	3860											
BAIAP3	8938	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	1391420	1391420	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcgcggtggacccctgcctGccaagtgcatccaggtcacc	12	16	1	0	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	BAIAP3	NM_003933	exon8	c.G766A	p.A256T	CTGCCTGCCAAGT		167	7	0.04	160	0	0		88		38	0	0				A	1391420	G	A	1391420	3	1	55	1	0	0	0	0	1	0	0	0	1302	1319	46	2	796	2	BAIAP3	16	1391420	Missense_Mutation	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	654612	1391420	88963333	50	3861											
DNASE1L2	1775	mdanderson.org	37	chr16	2287219	2287219	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgggcccctgtctccgcagCgtgtccgagcacgagtacag	14	15	1	0	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001374	exon4	c.C234A	p.S78R	CCGCAGCGTGTCC		48	3	0.06	44	0	0				0	0					A	2287219	C	A	2287219	3	1	55	1	0	0	0	0	1	0	0	0	4689	782	27	1	244	1	DNASE1L2	16	2287219	Missense_Mutation	SNP	C	TCGA-2G-AAHT-01A-11D-A42Y-10	895799	2287219	88067534	51	3862											
UBN1	29855	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	4924423	4924423	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cttgatccgcaatccagcctCctcggtggaagccgtgtcca	10	15	0	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	UBN1	NM_001079514	exon15	c.C2012T	p.S671F	CAGCCTCCTCGGT		100	16	0.16	64	1	0.015625		88		141	38	0.27				T	4924423	C	T	4924423	3	4	55	1	0	0	0	0	1	0	0	0	16952	855	30	3	2066	3	UBN1	16	4924423	Missense_Mutation	SNP	C	TCGA-2G-AAHT-01A-11D-A42Y-10	2637204	4924423	85430330	52	3863											
CRYM	1428	mdanderson.org	37	chr16	21289540	21289540	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaggtgttcctccacctcGgccgcgctcaggaacgctgg	14	15	1	0	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001888	exon3	c.C33A	p.A11A	CACCTCGGCCGCG		26	3	0.12	26	0	0				10	0	0				T	21289540	G	T	21289540	2	4	55	1	0	0	0	0	0	0	0	1	3944	1103	39	1		1	CRYM	16	21289540	Silent	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	16365117	21289540	69065213	53	3864											
CDH16	1014	mdanderson.org	37	chr16	66942309	66942309	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccattcagacagtcgcctTcaggggcacgctgtctgctg	13	13	3	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_004062	exon18	c.A2476G	p.K826E	TCGCCTTCAGGGG		37	3	0.08	44	0	0				0	0					C	66942309	T	C	66942309	3	2	55	1	0	0	0	0	1	0	0	0	3123	1792	62	4	17	4	CDH16	16	66942309	Missense_Mutation	SNP	T	TCGA-2G-AAHT-01A-11D-A42Y-10	45652769	66942309	23412444	54	3865											
PSMD7	5713	broad.mit.edu	37	chr16	74335489	74335489	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctggtaccacacaggccCtaaactacacaagaatgaca	8	12	0	2	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	PSMD7	NM_002811	exon4	c.C296A	p.P99H	CAGGCCCTAAACT		70	4	0.06	67	0	0		29		193	0	0				A	74335489	C	A	74335489	3	1	55	1	0	0	0	0	1	0	0	0	12751	681	24	3	310	3	PSMD7	16	74335489	Missense_Mutation	SNP	C	TCGA-2G-AAHT-01A-11D-A42Y-10	7393180	74335489	16019264	55	3866											
PKD1L2	114780	broad.mit.edu;mdanderson.org	37	chr16	81253925	81253925	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctctggcttaacagtggtGgccctaagcctcagagcaag	11	12	2	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	PKD1L2_ENST00000525539,rectum,carcinoma,0,2	PKD1L2	NM_001076780	exon1	c.C51A	p.A17A	AGTGGTGGCCCTA		140	5	0.04	146	0	0		361	2	0	0					T	81253925	G	T	81253925	2	4	55	1	0	0	0	0	0	0	0	1	12012	1335	47	3		3	PKD1L2	16	81253925	Silent	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	6918436	81253925	9100828	56	3867											
ADAD2	161931	broad.mit.edu	37	chr16	84228102	84228102	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatggggtggtctgccctgCgggcactgcgaatagcaaga	17	9	1	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	ADAD2	NM_139174	exon3	c.C689T	p.A230V	GCCCTGCGGGCAC		45	3	0.07	57	0	0		46		3	0	0				T	84228102	C	T	84228102	3	4	55	1	0	0	0	0	1	0	0	0	231	768	27	1	699	1	ADAD2	16	84228102	Missense_Mutation	SNP	C	TCGA-2G-AAHT-01A-11D-A42Y-10	2974177	84228102	6126651	57	3868											
SMG6	23293	mdanderson.org	37	chr17	1968954	1968954	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcctgccccttggccagGccgtccagctcattgatcac	9	17	3	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_017575	exon17	c.C3855A	p.G1285G	GGCCAGGCCGTCC		41	3	0.07	32	0	0				34	0	0				T	1968954	G	T	1968954	2	4	55	1	0	0	0	0	0	0	0	1	14850	1190	42	2		2	SMG6	17	1968954	Silent	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10		1968954	79226256	58	3869											
CDC27	996	broad.mit.edu	37	chr17	45234323	45234323	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctggtcctcctaataaactTcgaccagtttttggtttatt	7	9	0	0	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	CDC27	NM_001114091	exon7	c.A798G	p.R266R	TAAACTTCGACCA		60	4	0.07	47	1	0.0212765957		337		181	0	0				C	45234323	T	C	45234323	2	2	55	1	0	0	0	0	0	0	0	1	3088	1770	62	4		4	CDC27	17	45234323	Silent	SNP	T	TCGA-2G-AAHT-01A-11D-A42Y-10	43265369	45234323	35960887	59	3870											
STRADA	92335	broad.mit.edu	37	chr17	61790804	61790804	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcattggaacaagcttctaGgttaatcctccgtacagtca	7	11	3	0	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	STRADA	NM_001003787	exon6	c.C310A	p.L104I	CTTCTAGGTTAAT		234	6	0.03	105	0	0		27		81	0	0				T	61790804	G	T	61790804	3	4	55	1	0	0	0	0	1	0	0	0	15379	991	35	3	1075	3	STRADA	17	61790804	Missense_Mutation	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	16556481	61790804	19404406	60	3871											
FASN	2194	broad.mit.edu	37	chr17	80043188	80043188	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgtcctgcggggtgggccGgcggcacaggaagagcgtgg	21	10	0	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	FASN	NM_004104	exon24	c.C4213T	p.R1405W	TGGGCCGGCGGCA		222	5	0.02	156	0	0		154		225	0	0				A	80043188	G	A	80043188	3	1	55	1	0	0	0	0	1	0	0	0	5715	1115	39	1	3402	1	FASN	17	80043188	Missense_Mutation	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	18252384	80043188	1152022	61	3872											
ZNF491	126069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	11917208	11917208	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggattgtctcagtttataccTtacccatgaacgaactcaca	6	11	2	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_152356	exon3	c.T440C	p.L147P	TATACCTTACCCA		99	13	0.13	77	0	0				2	0	0				C	11917208	T	C	11917208	3	2	55	1	0	0	0	0	1	0	0	0	17998	1609	56	4	442	4	ZNF491	19	11917208	Missense_Mutation	SNP	T	TCGA-2G-AAHT-01A-11D-A42Y-10		11917208	47211775	62	3873											
ZNF799	90576	ucsc.edu	37	chr19	12501830	12501830	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttgtgattttgaaaggaaTagaaatcaataaaggctttc	8	3	1	3	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	ZNF799	NM_001080821	exon4	c.A1382G	p.Y461C	AAGGAATAGAAAT		184	5	0.03	130	1	0.0076923077		111		41	14	0.34	rescued with RNA-seq			C	12501830	T	C	12501830	3	2	55	1	0	0	0	0	1	0	0	0	18214	1406	49	4	553	4	ZNF799	19	12501830	Missense_Mutation	SNP	T	TCGA-2G-AAHT-01A-11D-A42Y-10	584622	12501830	46627153	63	3874			1	8		2	2	26	N	T_A	6.460421e-05
ZNF799	90576	ucsc.edu	37	chr19	12501855	12501855	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atcaataaaggctttcccacAtttgcatttatagggtttct	6	8	2	0	rs201077492		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	ZNF799	NM_001080821	exon4	c.T1357C	p.C453R	TCCCACATTTGCA		184	11	0.06	134	2	0.0149253731		111		49	18	0.37				G	12501855	A	G	12501855	3	3	55	1	0	0	0	0	1	0	0	0	18214	217	8	4	578	4	ZNF799	19	12501855	Missense_Mutation	SNP	A	TCGA-2G-AAHT-01A-11D-A42Y-10	25	12501855	46627128	64	3875			1	8		2	2	26	N	T_A	6.460421e-05
ZSWIM4	65249	mdanderson.org	37	chr19	13915877	13915877	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgtgcagtacctcatcagCgcccatcacactgaggtgct	9	14	3	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_023072	exon3	c.C627A	p.S209R	CATCAGCGCCCAT		44	3	0.07	45	0	0				19	0	0				A	13915877	C	A	13915877	3	1	55	1	0	0	0	0	1	0	0	0	18282	767	27	1	637	1	ZSWIM4	19	13915877	Missense_Mutation	SNP	C	TCGA-2G-AAHT-01A-11D-A42Y-10	1414022	13915877	45213106	65	3876											
ZNF429	353088	mdanderson.org	37	chr19	21720482	21720482	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttacaaatgtgaagaatgtGgcaaagcttttaaccggtcc	9	8	0	2	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_001001415	exon4	c.G1627T	p.G543C	GAATGTGGCAAAG		51	3	0.06	49	0	0				23	0	0				T	21720482	G	T	21720482	3	4	55	1	0	0	0	0	1	0	0	0	17958	1348	47	3	1641	3	ZNF429	19	21720482	Missense_Mutation	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	7804605	21720482	37408501	66	3877											
IRF2BP1	26145	mdanderson.org	37	chr19	46388367	46388367	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actgctttggggcgcccgtgCcattcctctgcccggcctcg	12	17	1	0	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_015649	exon1	c.G666A	p.W222X	CCCGTGCCATTCC		29	3	0.1	34	0	0				58	0	0				T	46388367	C	T	46388367	4	4	55	1	0	0	0	0	0	1	0	0	7872	740	26	2	1092	2	IRF2BP1	19	46388367	Nonsense_Mutation	SNP	C	TCGA-2G-AAHT-01A-11D-A42Y-10	24667885	46388367	12740616	67	3878											
MZF1	7593	mdanderson.org	37	chr19	59073497	59073497	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtgctctggtggaagcggCggccacagtcctggcaggcg	18	11	1	0	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_003422	exon6	c.G2147A	p.R716H	AAGCGGCGGCCAC		47	3	0.06	33	0	0				41	0	0				T	59073497	C	T	59073497	3	4	55	1	0	0	0	0	1	0	0	0	10155	768	27	1	61	1	MZF1	19	59073497	Missense_Mutation	SNP	C	TCGA-2G-AAHT-01A-11D-A42Y-10	12685130	59073497	55486	68	3879											
RASSF2	9770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	4768332	4768332	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cattaggaacactttggagaTctgctcacatgggccctgga	11	10	2	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_014737	exon10	c.A760T	p.I254F	TGGAGATCTGCTC		142	31	0.22	112	0	0				56	23	0.41				A	4768332	T	A	4768332	3	1	55	1	0	0	0	0	1	0	0	0	13137	1435	50	5	232	5	RASSF2	20	4768332	Missense_Mutation	SNP	T	TCGA-2G-AAHT-01A-11D-A42Y-10		4768332	58257188	69	3880											
POFUT1	23509	mdanderson.org	37	chr20	30795757	30795757	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccgacatgggcgccgccGcgtgggcacggccgctgagc	19	15	0	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	POFUT1,NS,carcinoma,-2,1	POFUT1	NM_172236	exon1	c.G13T	p.A5S	GCCGCCGCGTGGG		17	2	0.12	9	0	0		-2	1	28	0	0				T	30795757	G	T	30795757	3	4	55	1	0	0	0	0	1	0	0	0	12230	1087	38	1	15	1	POFUT1	20	30795757	Missense_Mutation	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	26027425	30795757	32229763	70	3881											
CDH26	60437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	58560110	58560110	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggactgtggagaaccgtcaCtgtcatccacgaccaccgtt	11	13	2	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_177980	exon7	c.C763T	p.L255L	CCGTCACTGTCAT		143	20	0.14	106	0	0				0	0					T	58560110	C	T	58560110	2	4	55	1	0	0	0	0	0	0	0	1	3132	564	20	3		3	CDH26	20	58560110	Silent	SNP	C	TCGA-2G-AAHT-01A-11D-A42Y-10	27764353	58560110	4465410	71	3882											
KRTAP10-10	353333	mdanderson.org	37	chr21	46057778	46057778	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccagcaggcctgctgtgtGcctgtctgctctaagtccgt	12	13	2	0	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_181688	exon1	c.G444T	p.V148V	CTGTGTGCCTGTC		75	4	0.05	59	0	0				0	0					T	46057778	G	T	46057778	2	4	55	1	0	0	0	0	0	0	0	1	8548	1306	46	2		2	KRTAP10-10	21	46057778	Silent	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10		46057778	2072117	72	3883											
MCM3AP	8888	broad.mit.edu	37	chr21	47704596	47704596	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtaaaatttgaagtggtaGctgaactacttgttacttga	10	4	0	3	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	MCM3AP	NM_003906	exon1	c.C605A	p.A202D	GTGGTAGCTGAAC		134	5	0.04	101	0	0		146		46	0	0				T	47704596	G	T	47704596	3	4	55	1	0	0	0	0	1	0	0	0	9437	971	34	2	5449	2	MCM3AP	21	47704596	Missense_Mutation	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	1646818	47704596	425299	73	3884											
OR11H1	81061	bcgsc.ca;mdanderson.org	37	chr22	16449645	16449645	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aatggctccattccctgttaTagtcagtgcatatgttgtag	9	8	1	0	rs145243620		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	OR11H1	NM_001005239	exon1	c.A160G	p.I54V	CTGTTATAGTCAG		554	43	0.08	540	0	0		44		0	0					C	16449645	T	C	16449645	3	2	55	1	0	0	0	0	1	0	0	0	10973	1406	49	4	822	4	OR11H1	22	16449645	Missense_Mutation	SNP	T	TCGA-2G-AAHT-01A-11D-A42Y-10		16449645	34854921	74	3885											
DGCR6	8214	mdanderson.org	37	chr22	18897765	18897765	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgcctgtgcttcaggcgGctcagcagcgagaactagag	13	12	2	2	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_005675	exon3	c.G352A	p.A118T	CAGGCGGCTCAGC		50	3	0.06	37	0	0				24	0	0				A	18897765	G	A	18897765	3	1	55	1	0	0	0	0	1	0	0	0	4490	1203	42	2	362	2	DGCR6	22	18897765	Missense_Mutation	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	2448120	18897765	32406801	75	3886											
RTN4R	65078	mdanderson.org	37	chr22	20229344	20229344	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagtcaccagtcccgccacCcccgctgcctgcctggccca	9	21	1	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_023004	exon2	c.G1312A	p.G438S	CGCCACCCCCGCT		59	3	0.05	51	0	0				18	0	0				T	20229344	C	T	20229344	3	4	55	1	0	0	0	0	1	0	0	0	13781	623	22	3	113	3	RTN4R	22	20229344	Missense_Mutation	SNP	C	TCGA-2G-AAHT-01A-11D-A42Y-10	1331579	20229344	31075222	76	3887											
CELSR1	9620	broad.mit.edu	37	chr22	46832175	46832175	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagcaagccgttcctttccTgagtggcaaacctgtggggc	13	11	0	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	CELSR1	NM_014246	exon4	c.A4418G	p.Q1473R	CTTTCCTGAGTGG		81	3	0.04	53	0	0		242		17	0	0				C	46832175	T	C	46832175	3	2	55	1	0	0	0	0	1	0	0	0	3243	1580	55	4	4754	4	CELSR1	22	46832175	Missense_Mutation	SNP	T	TCGA-2G-AAHT-01A-11D-A42Y-10	26602831	46832175	4472391	77	3888											
MID2	11043	mdanderson.org	37	chrX	107084386	107084386	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaggtctcctactgtgaccGttgcctgcgggccacgcacc	12	15	1	2	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_052817	exon2	c.G491A	p.R164H	GTGACCGTTGCCT		54	3	0.06	64	0	0				4	0	0				A	107084386	G	A	107084386	3	1	55	1	0	0	0	0	1	0	0	0	9625	1145	40	1	497	1	MID2	23	107084386	Missense_Mutation	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10		107084386	48186174	78	3889											
GABRE	2564	broad.mit.edu	37	chrX	151123181	151123181	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	accagctggtacctacaagtTaaggcaaacaagccagtaga	9	10	0	1	novel		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	GABRE	NM_004961	exon9	c.A1513T	p.N505Y	ACAAGTTAAGGCA		110	14	0.13	114	7	0.0614035088		141		0	0					A	151123181	T	A	151123181	3	1	55	1	0	0	0	0	1	0	0	0	6204	1754	61	5	11	5	GABRE	23	151123181	Missense_Mutation	SNP	T	TCGA-2G-AAHT-01A-11D-A42Y-10	44038795	151123181	4147379	79	3890											
ABCD1	215	mdanderson.org	37	chrX	153008731	153008731	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgagcatcgacgtggaagGcaagatcttccaggcggcca	14	11	1	2	rs200460000		TCGA-2G-AAHT-01A-11D-A42Y-10	TCGA-2G-AAHT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	17178935-8114-4de7-abd2-9f4df326a495	9dd4b0d8-774d-4b6c-b2d1-f75b413982d5	.	.	NM_000033	exon9	c.G1922T	p.G641V	TGGAAGGCAAGAT		62	9	0.15	59	1	0.0169491525				22	0	0				T	153008731	G	T	153008731	3	4	55	1	0	0	0	0	1	0	0	0	60	1203	42	2	1956	2	ABCD1	23	153008731	Missense_Mutation	SNP	G	TCGA-2G-AAHT-01A-11D-A42Y-10	1885550	153008731	2261829	80	3891											
XKR8	55113	broad.mit.edu	37	chr1	28293362	28293362	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcaacgtggctgagggccGcacccgaggccgggccatca	15	14	2	1	rs147277716	bycluster	TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	XKR8	NM_018053	exon3	c.G839A	p.R280H	AGGGCCGCACCCG		72	3	0.04	88	1	0.0113636364		15		34	0	0				A	28293362	G	A	28293362	3	1	56	1	0	0	0	0	1	0	0	0	17496	1087	38	1	849	1	XKR8	1	28293362	Missense_Mutation	SNP	G	TCGA-2G-AAKD-01A-31D-A42Y-10		28293362	220957259	1	3892											
CELF3	11189	broad.mit.edu	37	chr1	151678746	151678746	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgctgCtgttgaggtggtggtggggg	20	7	0	1	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	CELF3	NM_007185	exon10	c.G1080A	p.Q360Q	CTGCTGCTGTTGA		37	5	0.14	22	0	0		49		1	0	0				T	151678746	C	T	151678746	2	4	56	1	0	0	0	0	0	0	0	1	3239	796	28	2		2	CELF3	1	151678746	Silent	SNP	C	TCGA-2G-AAKD-01A-31D-A42Y-10	123385384	151678746	97571875	2	3893											
C1orf61	10485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156384450	156384450	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggccatttcactcaccgccCgggagctgtccgtggtgctg	13	15	2	0	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_006365	exon4	c.G167A	p.R56Q	ACCGCCCGGGAGC		78	20	0.26	60	0	0				1	1	1				T	156384450	C	T	156384450	3	4	56	1	0	0	0	0	1	0	0	0	2066	652	23	1	319	1	C1orf61	1	156384450	Missense_Mutation	SNP	C	TCGA-2G-AAKD-01A-31D-A42Y-10	4705704	156384450	92866171	3	3894											
SNRNP200	23020	hgsc.bcm.edu;bcgsc.ca	37	chr2	96943998	96943998	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcaggagattgtcttcatGgtgccggatgggaatgttct	13	8	4	1	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_014014	exon39	c.C5587A	p.H1863N	CTTCATGGTGCCG		93	6	0.06	79	0	0				261	0	0				T	96943998	G	T	96943998	3	4	56	1	0	0	0	0	1	0	0	0	14905	1348	47	3	851	3	SNRNP200	2	96943998	Missense_Mutation	SNP	G	TCGA-2G-AAKD-01A-31D-A42Y-10		96943998	146255375	4	3895											
ANKRD36B	57730	broad.mit.edu	37	chr2	98192550	98192550	+	RNA	DEL	T	T	-													aattcattatcatgtgactaTtaaaaaaatacaacataata					rs370632971		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	.	.	.	.	TGACTATTAAAAA		13	4	0.31	6	0	0				0	0					-	98192550	T	-	98192550	6	5	56	0	1	1	0	1	0	0	0	0	660	1508	52	0		0	ANKRD36B	2	98192550	RNA	DEL	T	TCGA-2G-AAKD-01A-31D-A42Y-10	1248552	98192550	145006823	5	3896											
POLR1B	84172	broad.mit.edu	37	chr2	113333030	113333030	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggagatggaacgggatgcGcttttagctcatggtacatc	15	7	1	1	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	POLR1B,NS,carcinoma,0,1	POLR1B	NM_019014	exon15	c.G3132T	p.A1044A	GGATGCGCTTTTA		169	4	0.02	155	0	0		95	1	34	0	0				T	113333030	G	T	113333030	2	4	56	1	0	0	0	0	0	0	0	1	12257	1074	38	1		1	POLR1B	2	113333030	Silent	SNP	G	TCGA-2G-AAKD-01A-31D-A42Y-10	15140480	113333030	129866343	6	3897											
GAL3ST2	64090	hgsc.bcm.edu;broad.mit.edu	37	chr2	242742846	242742846	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gagtcctccttcatctactaCaaaacctacgcccccgcctt	4	18	2	0	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_022134	exon4	c.C462G	p.Y154X	CTACTACAAAACC		181	39	0.22	131	0	0				0	0					G	242742846	C	G	242742846	4	3	56	1	0	0	0	0	0	1	0	0	6237	489	17	5	476	5	GAL3ST2	2	242742846	Nonsense_Mutation	SNP	C	TCGA-2G-AAKD-01A-31D-A42Y-10	129409816	242742846	456527	7	3898											
MSL2	55167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	135871188	135871188	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	agcaatgctgagggtgctttCagacattggagataaactag	12	6	1	3	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_018133	exon2	c.G535A	p.E179K	TGCTTTCAGACAT		132	28	0.21	126	0	0				14	5	0.36				T	135871188	C	T	135871188	3	4	56	1	0	0	0	0	1	0	0	0	9926	835	29	3	1202	3	MSL2	3	135871188	Missense_Mutation	SNP	C	TCGA-2G-AAKD-01A-31D-A42Y-10		135871188	62151242	8	3899											
ZBBX	79740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	167034805	167034805	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcacttacatcatccagttcGactatctttagagatggttc	7	10	2	1	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_024687	exon14	c.C1182T	p.V394V	CAGTTCGACTATC		142	22	0.15	96	0	0				0	0					A	167034805	G	A	167034805	2	1	56	1	0	0	0	0	0	0	0	1	17575	1045	37	1		1	ZBBX	3	167034805	Silent	SNP	G	TCGA-2G-AAKD-01A-31D-A42Y-10	31163617	167034805	30987625	9	3900											
SPATA18	132671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	52943177	52943177	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatcgacaaggctgagaccGttcagcggatcatctacatc	10	12	3	1	rs193921037	bycluster;by1000genomes	TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	SPATA18_ENST00000295213,NS,adenoma,0,2	SPATA18_ENST00000295213	NM_145263	exon7	c.G991A	p.V331I	GAGACCGTTCAGC		215	26	0.12	174	0	0		0	2	1	1	1				A	52943177	G	A	52943177	3	1	56	1	0	0	0	0	1	0	0	0	15058	1145	40	1	1017	1	SPATA18	4	52943177	Missense_Mutation	SNP	G	TCGA-2G-AAKD-01A-31D-A42Y-10		52943177	138211099	10	3901											
TMPRSS11E	28983	broad.mit.edu	37	chr4	69343244	69343244	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agctttctagccctgttcccTacacaaatgcagtacataga	6	12	1	1	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	TMPRSS11E	NM_014058	exon8	c.T865C	p.Y289H	GTTCCCTACACAA		369	5	0.01	421	0	0		40		0	0					C	69343244	T	C	69343244	3	2	56	1	0	0	0	0	1	0	0	0	16301	1522	53	4	895	4	TMPRSS11E	4	69343244	Missense_Mutation	SNP	T	TCGA-2G-AAKD-01A-31D-A42Y-10	16400067	69343244	121811032	11	3902											
NEIL3	55247	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	178272589	178272589	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catctagcagggtggatcatGttatggactccgtggctcgg	14	9	2	0	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	NEIL3	NM_018248	exon7	c.G925A	p.V309I	GATCATGTTATGG		67	41	0.61	72	1	0.0138888889		89		4	3	0.75				A	178272589	G	A	178272589	3	1	56	1	0	0	0	0	1	0	0	0	10366	1377	48	3	951	3	NEIL3	4	178272589	Missense_Mutation	SNP	G	TCGA-2G-AAKD-01A-31D-A42Y-10	108929345	178272589	12881687	12	3903											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	187557879	187557879	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	attggggccctcatccttgtCggtggctatgacgtgataga	13	9	1	3	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_005245	exon5	c.G3832A	p.D1278N	CCTTGTCGGTGGC		164	31	0.19	115	0	0				0	0					T	187557879	C	T	187557879	3	4	56	1	0	0	0	0	1	0	0	0	5721	884	31	1	10026	1	FAT1	4	187557879	Missense_Mutation	SNP	C	TCGA-2G-AAKD-01A-31D-A42Y-10	9285290	187557879	3596397	13	3904											
PRLR	5618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	35065642	35065642	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacctccctctgctgggttGcctttccctcttctctagac	6	17	3	1	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	PRLR,NS,carcinoma,-1,1	PRLR	NM_000949	exon10	c.C1418T	p.A473V	TGGGTTGCCTTTC		136	48	0.35	157	0	0		-1	1	2	0	0				A	35065642	G	A	35065642	3	1	56	1	0	0	0	0	1	0	0	0	12582	1319	46	2	454	2	PRLR	5	35065642	Missense_Mutation	SNP	G	TCGA-2G-AAKD-01A-31D-A42Y-10		35065642	145849618	14	3905											
PAIP1	10605	hgsc.bcm.edu	37	chr5	43539098	43539098	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcgagtaacttcatccccTtttgcagcttgatctttaac	5	11	2	1	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_006451	exon5	c.A774G	p.K258K	ATCCCCTTTTGCA		61	4	0.07	54	0	0				45	0	0				C	43539098	T	C	43539098	2	2	56	1	0	0	0	0	0	0	0	1	11442	1606	56	4		4	PAIP1	5	43539098	Silent	SNP	T	TCGA-2G-AAKD-01A-31D-A42Y-10	8473456	43539098	137376162	15	3906											
MYO6	4646	broad.mit.edu	37	chr6	76591494	76591494	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactggctcacatgcagtcGctggaagaaagttcagtggt	12	9	3	1	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	MYO6,NS,carcinoma,+1,1	MYO6	NM_004999	exon23	c.G2375T	p.R792L	GCAGTCGCTGGAA		91	3	0.03	100	1	0.01		124	1	5	0	0				T	76591494	G	T	76591494	3	4	56	1	0	0	0	0	1	0	0	0	10128	1087	38	1	2461	1	MYO6	6	76591494	Missense_Mutation	SNP	G	TCGA-2G-AAKD-01A-31D-A42Y-10		76591494	94523573	16	3907											
MOXD1	26002	broad.mit.edu;bcgsc.ca	37	chr6	132643950	132643950	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatgcctctgccagccagGtgagcatggagaagaacagc	13	11	1	4	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	MOXD1	NM_015529	exon8	c.C1173A	p.H391Q	AGCCAGGTGAGCA		142	7	0.05	122	0	0		136		7	0	0				T	132643950	G	T	132643950	3	4	56	1	0	0	0	0	1	0	0	0	9768	1252	44	3	688	3	MOXD1	6	132643950	Missense_Mutation	SNP	G	TCGA-2G-AAKD-01A-31D-A42Y-10	56052456	132643950	38471117	17	3908											
RAPGEF5	9771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	22348122	22348122	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttgaaagtatagatgctgGtccactgtttgaaacaaaaa	8	6	1	3	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_012294	exon5	c.C57T	p.D19D	ATGCTGGTCCACT		90	9	0.1	55	0	0				0	0					A	22348122	G	A	22348122	2	1	56	1	0	0	0	0	0	0	0	1	13098	1252	44	3		3	RAPGEF5	7	22348122	Silent	SNP	G	TCGA-2G-AAKD-01A-31D-A42Y-10		22348122	136790541	18	3909											
FLNC	2318	broad.mit.edu	37	chr7	128478446	128478446	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaacctgtgggcaatgtGgccaacaaacccacctactt	9	13	0	0	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	FLNC	NM_001127487	exon7	c.G1173T	p.V391V	CAATGTGGCCAAC		106	4	0.04	82	0	0		339		11	0	0				T	128478446	G	T	128478446	2	4	56	1	0	0	0	0	0	0	0	1	5967	1335	47	3		3	FLNC	7	128478446	Silent	SNP	G	TCGA-2G-AAKD-01A-31D-A42Y-10	106130324	128478446	30660217	19	3910											
CALB1	793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	91078131	91078131	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caagatcagtcttaccattaGgtctgtatactcggctaatt	7	9	3	1	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_004929	exon6	c.C445T	p.L149L	CCATTAGGTCTGT		120	16	0.13	114	0	0				74	18	0.24				A	91078131	G	A	91078131	2	1	56	1	0	0	0	0	0	0	0	1	2591	991	35	3		3	CALB1	8	91078131	Silent	SNP	G	TCGA-2G-AAKD-01A-31D-A42Y-10		91078131	55285891	20	3911											
GRHL2	79977	broad.mit.edu	37	chr8	102585952	102585952	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctccgtcagaagcagggggAgggccccatgacctacctca	12	14	3	2	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	GRHL2	NM_024915	exon6	c.A791G	p.E264G	AGGGGGAGGGCCC		178	4	0.02	124	1	0.0080645161		68		2	0	0				G	102585952	A	G	102585952	3	3	56	1	0	0	0	0	1	0	0	0	6804	304	11	4	813	4	GRHL2	8	102585952	Missense_Mutation	SNP	A	TCGA-2G-AAKD-01A-31D-A42Y-10	11507821	102585952	43778070	21	3912											
DPCD	25911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	103361002	103361002	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaagatgagtttccagtggCggattcgaaacctcccctat	9	12	0	2	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_015448	exon4	c.C313T	p.R105W	CAGTGGCGGATTC		80	18	0.23	69	0	0				30	11	0.37				T	103361002	C	T	103361002	3	4	56	1	0	0	0	0	1	0	0	0	4738	759	27	1	327	1	DPCD	10	103361002	Missense_Mutation	SNP	C	TCGA-2G-AAKD-01A-31D-A42Y-10		103361002	32173745	22	3913											
MUC2	4583	broad.mit.edu	37	chr11	1093292	1093292	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcgacacccatcaccaccaCcactacggtgaccccaaccc	4	21	1	1	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	MUC2	NM_002457	exon30	c.C5111T	p.T1704I	CCACCACCACTAC		18	3	0.17	23	0	0		614		0	0					T	1093292	C	T	1093292	3	4	56	1	0	0	0	0	1	0	0	0	10022	507	18	3	5229	3	MUC2	11	1093292	Missense_Mutation	SNP	C	TCGA-2G-AAKD-01A-31D-A42Y-10		1093292	133913224	23	3914											
SLC43A3	29015	bcgsc.ca	37	chr11	57193118	57193118	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cccagggtgaagatgagtgaGaacctctcatcctgggcttt	12	10	1	4	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	SLC43A3	NM_014096	exon4	c.C210A	p.F70L	GAGTGAGAACCTC		84	5	0.06	70	0	0		54		5	0	0				T	57193118	G	T	57193118	3	4	56	1	0	0	0	0	1	0	0	0	14688	933	33	3	1309	3	SLC43A3	11	57193118	Missense_Mutation	SNP	G	TCGA-2G-AAKD-01A-31D-A42Y-10	56099826	57193118	77813398	24	3915											
IQSEC3	440073	hgsc.bcm.edu	37	chr12	274692	274692	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	atgcagttccagctctttgaGaacgagtgtaagtctttgac	10	8	2	2	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_001170738	exon10	c.G2802C	p.E934D	CTTTGAGAACGAG		253	11	0.04	87	0	0				4	0	0				C	274692	G	C	274692	3	2	56	1	0	0	0	0	1	0	0	0	7862	933	33	5	2840	5	IQSEC3	12	274692	Missense_Mutation	SNP	G	TCGA-2G-AAKD-01A-31D-A42Y-10		274692	133577203	25	3916											
TAS2R43	259289	hgsc.bcm.edu	37	chr12	11244878	11244878	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgctggtgttgtgtccggaAttggttcctgcaggtgggtt	16	6	0	0	rs369719862		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	.	.	.	.	TCCGGAATTGGTT		93	6	0.06	18	0	0				0	0					G	11244878	A	G	11244878	1	3	56	0	1	0	0	0	0	0	0	0	15637	116	4	4		4	TAS2R43	12	11244878	RNA	SNP	A	TCGA-2G-AAKD-01A-31D-A42Y-10	10970186	11244878	122607017	26	3917											
ITGA7	3679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	56092570	56092570	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctccccagacagcataacctCgggcaccaggcgactggcgc	11	17	0	1	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	ITGA7_ENST00000553804,colon,carcinoma,0,2	ITGA7_ENST00000553804	NM_001144996	exon6	c.G934A	p.E312K	TAACCTCGGGCAC		100	25	0.25	92	0	0		0	2	9	2	0.22				T	56092570	C	T	56092570	3	4	56	1	0	0	0	0	1	0	0	0	7924	893	31	1	2571	1	ITGA7	12	56092570	Missense_Mutation	SNP	C	TCGA-2G-AAKD-01A-31D-A42Y-10	44847692	56092570	77759325	27	3918											
PABPC3	5042	bcgsc.ca	37	chr13	25671122	25671122	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcaatggaaaacaaatttaCgttggtcgagctcagaaaaa	8	7	2	1	rs79072440	bycluster	TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	PABPC3	NM_030979	exon1	c.C786T	p.Y262Y	AATTTACGTTGGT		103	8	0.08	104	1	0.0096153846		129		3	3	1				T	25671122	C	T	25671122	2	4	56	1	0	0	0	0	0	0	0	1	11411	547	19	1		1	PABPC3	13	25671122	Silent	SNP	C	TCGA-2G-AAKD-01A-31D-A42Y-10		25671122	89498756	28	3919											
POTEG	404785	broad.mit.edu	37	chr14	19553528	19553528	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttcccctggtgcagggggAgcggcaagagcaacgtgggc	18	11	0	1	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	POTEG	NM_001005356	exon1	c.A112G	p.S38G	AGGGGGAGCGGCA		1024	11	0.01	988	2	0.0020242915		118		0	0					G	19553528	A	G	19553528	3	3	56	1	0	0	0	0	1	0	0	0	12312	304	11	4	114	4	POTEG	14	19553528	Missense_Mutation	SNP	A	TCGA-2G-AAKD-01A-31D-A42Y-10		19553528	87796012	29	3920											
MAGEL2	54551	bcgsc.ca	37	chr15	23889164	23889164	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggagggggcctgctggtGgggccgtgggcactgtcacc	21	11	1	0	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	MAGEL2	NM_019066	exon1	c.C3726A	p.P1242P	GCTGGTGGGGCCG		55	5	0.09	77	0	0		108		13	0	0				T	23889164	G	T	23889164	2	4	56	1	0	0	0	0	0	0	0	1	9238	1335	47	3		3	MAGEL2	15	23889164	Silent	SNP	G	TCGA-2G-AAKD-01A-31D-A42Y-10		23889164	78642228	30	3921											
PRPF8	10594	hgsc.bcm.edu	37	chr17	1579989	1579989	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatcatattctctatgggcGtcggcagcccagggacctaa	12	11	2	0	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_006445	exon16	c.C2198A	p.T733K	ATGGGCGTCGGCA		57	4	0.07	72	0	0				20	0	0				T	1579989	G	T	1579989	3	4	56	1	0	0	0	0	1	0	0	0	12626	1145	40	1	4921	1	PRPF8	17	1579989	Missense_Mutation	SNP	G	TCGA-2G-AAKD-01A-31D-A42Y-10		1579989	79615221	31	3922											
KRT32	3882	hgsc.bcm.edu;bcgsc.ca	37	chr17	39619137	39619137	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgatctcgccctccagccGggcccggacgtccagcagca	12	17	1	1	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_002278	exon6	c.C1162T	p.R388W	CCAGCCGGGCCCG		96	5	0.05	78	0	0				0	0					A	39619137	G	A	39619137	3	1	56	1	0	0	0	0	1	0	0	0	8510	1115	39	1	192	1	KRT32	17	39619137	Missense_Mutation	SNP	G	TCGA-2G-AAKD-01A-31D-A42Y-10	38039148	39619137	41576073	32	3923											
ACE	1636	bcgsc.ca	37	chr17	61557201	61557201	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgggagggctggcacaacGctgcgggcatcccgctgaaa	15	13	0	1	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	ACE,NS,carcinoma,-1,1	ACE	NM_000789	exon4	c.G583T	p.A195S	CACAACGCTGCGG		55	4	0.07	40	0	0		187	1	6	0	0				T	61557201	G	T	61557201	3	4	56	1	0	0	0	0	1	0	0	0	136	1087	38	1	597	1	ACE	17	61557201	Missense_Mutation	SNP	G	TCGA-2G-AAKD-01A-31D-A42Y-10	21938064	61557201	19638009	33	3924											
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	21427447	21427480	+	Frame_Shift_Del	DEL	CCTTTGTGAAGAGATGACGGGGCAGTGCCGCTGC	CCTTTGTGAAGAGATGACGGGGCAGTGCCGCTGC	-													gcgtgcagctgtggtcggcgCctttgtgaagagatgacggg					novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	CCTTTGTGAAGAGATGACGGGGCAGTGCCGCTGC	CCTTTGTGAAGAGATGACGGGGCAGTGCCGCTGC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	.	NM_198129	exon32	c.3950_3983del	p.1317_1328del	TCGGCGCCTTTGT		26	7	0.27	23	0	0				0	0					-	21427480	CCTTTGTGAAGAGATGACGGGGCAGTGCCGCTGC	-	21427447	7	5	56	1	0	1	0	1	0	0	0	0	8645	726	26	0	4077	0	LAMA3	18	21427447	Frame_Shift_Del	DEL	CCTTTGTGAAGAGATGACGGGGCAGTGCCGCTGC	TCGA-2G-AAKD-01A-31D-A42Y-10		21427447	56649801	34	3925											
RYR1	6261	hgsc.bcm.edu	37	chr19	38986924	38986924	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgctgggcatgcacgagacGgtcatggaggtcatggtcaa	16	9	3	1	rs370261565	alternate_allele	TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	RYR1,NS,carcinoma,0,1	RYR1	NM_001042723	exon40	c.G6618T	p.T2206T	CGAGACGGTCATG		42	2	0.05	33	0	0		0	1	0	0					T	38986924	G	T	38986924	2	4	56	1	0	0	0	0	0	0	0	1	13819	1103	39	1		1	RYR1	19	38986924	Silent	SNP	G	TCGA-2G-AAKD-01A-31D-A42Y-10		38986924	20142059	35	3926											
ELMO2	63916	hgsc.bcm.edu	37	chr20	45014804	45014804	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcccacggtgatttcctcGgctatcttctggtacagact	9	12	2	2	rs201990540	bycluster;by1000genomes	TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	ELMO2,NS,carcinoma,-1,1	ELMO2	NM_182764	exon8	c.C636T	p.A212A	TTCCTCGGCTATC		64	5	0.08	43	1	0.023255814	0.002	-1	1	4	0	0				A	45014804	G	A	45014804	2	1	56	1	0	0	0	0	0	0	0	1	5094	1103	39	1		1	ELMO2	20	45014804	Silent	SNP	G	TCGA-2G-AAKD-01A-31D-A42Y-10		45014804	18010716	36	3927											
CELSR1	9620	ucsc.edu	37	chr22	46768831	46768831	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacgtagtagaaccgcatggGccccgtgtcgatgttgcgca	14	11	0	1	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	CELSR1	NM_014246	exon25	c.C7708T	p.P2570S	GCATGGGCCCCGT		28	4	0.14	39	0	0		242		1	0	0				A	46768831	G	A	46768831	3	1	56	1	0	0	0	0	1	0	0	0	3243	1203	42	2	1380	2	CELSR1	22	46768831	Missense_Mutation	SNP	G	TCGA-2G-AAKD-01A-31D-A42Y-10		46768831	4535735	37	3928											
RBM3	5935	ucsc.edu	37	chrX	48434994	48434994	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagagactataatggcaggTgggtagccaaagggctggga	16	7	0	1	novel		TCGA-2G-AAKD-01A-31D-A42Y-10	TCGA-2G-AAKD-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	26d84898-bffe-4bf2-98b3-e2745b224de3	32a4f026-dca8-4f8c-81e8-2d7e8ea2d166	.	RBM3	NM_006743	exon5	c.413+2T>G	.	GGCAGGTGGGTAG		54	15	0.28	39	7	0.1794871795		20		2	0	0				G	48434994	T	G	48434994	5	3	56	1	0	0	0	0	0	0	1	0	13180	1710	59	4	429	4	RBM3	23	48434994	Splice_Site	SNP	T	TCGA-2G-AAKD-01A-31D-A42Y-10		48434994	106835566	38	3929											
SLC2A7	155184	bcgsc.ca	37	chr1	9074839	9074839	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaggtgcagcacagacagGtggccctcggcgcgctcggc	16	14	0	2	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	SLC2A7	NM_207420	exon7	c.C804A	p.H268Q	AGACAGGTGGCCC		86	0	0	50	1	0.02		56		1	0	0				T	9074839	G	T	9074839	3	4	57	1	0	0	0	0	1	0	0	0	14604	1252	44	3	758	3	SLC2A7	1	9074839	Missense_Mutation	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10		9074839	240175782	1	3930											
PTCHD2	57540	bcgsc.ca	37	chr1	11580781	11580781	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcatcttgtccctggtgttCgccagccggctccgccccgc	10	19	2	0	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	PTCHD2	NM_020780	exon10	c.C2238T	p.F746F	GGTGTTCGCCAGC		300	2	0.01	159	1	0.0062893082		193		1	0	0				T	11580781	C	T	11580781	2	4	57	1	0	0	0	0	0	0	0	1	12781	883	31	1		1	PTCHD2	1	11580781	Silent	SNP	C	TCGA-2G-AAKG-01A-11D-A42Y-10	2505942	11580781	237669840	2	3931											
KLHDC7A	127707	broad.mit.edu	37	chr1	18809307	18809307	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacgacccccgcctggaccGctgggactttgccccgccgc	11	19	0	0	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	KLHDC7A	NM_152375	exon1	c.G1832T	p.R611L	TGGACCGCTGGGA		144	3	0.02	63	0	0		60		0	0					T	18809307	G	T	18809307	3	4	57	1	0	0	0	0	1	0	0	0	8402	1087	38	1	1834	1	KLHDC7A	1	18809307	Missense_Mutation	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10	7228526	18809307	230441314	3	3932											
RPL5	6125	hgsc.bcm.edu;broad.mit.edu	37	chr1	93299200	93299201	+	Frame_Shift_Del	DEL	AG	AG	-													tgatagttcgtgtgacaaacAgagatatcatttgtcaggta					novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	AG	AG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_000969	exon3	c.171_172del	p.57_58del	ACAAACAGAGATA		49	17	0.35	48	0	0				1926	0	0				-	93299201	AG	-	93299200	7	5	57	1	0	1	0	1	0	0	0	0	13648	180	7	0	182	0	RPL5	1	93299200	Frame_Shift_Del	DEL	AG	TCGA-2G-AAKG-01A-11D-A42Y-10	74489893	93299200	155951421	4	3933											
DCLRE1B	64858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	114448290	114448290	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggcaccgcacgtctcttcTtcttgtctcacatgcactcg	7	16	4	0	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_022836	exon1	c.T82A	p.F28I	CTCTTCTTCTTGT		174	26	0.15	109	0	0				6	1	0.17				A	114448290	T	A	114448290	3	1	57	1	0	0	0	0	1	0	0	0	4318	1609	56	5	84	5	DCLRE1B	1	114448290	Missense_Mutation	SNP	T	TCGA-2G-AAKG-01A-11D-A42Y-10	21149090	114448290	134802331	5	3934											
FAM5B	57795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	177249621	177249621	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacctttcctggcactttcCtggaacagagccacagctgc	9	15	0	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_021165	exon8	c.C1309T	p.L437L	ACTTTCCTGGAAC		311	68	0.22	287	0	0				0	0					T	177249621	C	T	177249621	2	4	57	1	0	0	0	0	0	0	0	1	5627	680	24	3		3	FAM5B	1	177249621	Silent	SNP	C	TCGA-2G-AAKG-01A-11D-A42Y-10	62801331	177249621	72001000	6	3935											
FAM5C	339479	bcgsc.ca	37	chr1	190068175	190068175	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ggtcattcggacacgtgcacGagtgcgtctcttctgaaaag	12	10	3	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	FAM5C,NS,carcinoma,+1,3	FAM5C	NM_199051	exon8	c.C1274G	p.S425W	GTGCACGAGTGCG		65	0	0	101	0	0		343	3	0	0					C	190068175	G	C	190068175	3	2	57	1	0	0	0	0	1	0	0	0	5628	1059	37	5	1030	5	FAM5C	1	190068175	Missense_Mutation	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10	12818554	190068175	59182446	7	3936											
EPRS	2058	broad.mit.edu	37	chr1	220151968	220151968	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgcggatgttaacactgaGtaatcgccttcgataatcat	8	9	1	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	EPRS,NS,carcinoma,0,1	EPRS	NM_004446	exon28	c.C4003A	p.L1335I	CACTGAGTAATCG		83	5	0.06	105	0	0		140	1	235	1	0				T	220151968	G	T	220151968	3	4	57	1	0	0	0	0	1	0	0	0	5219	1029	36	3	555	3	EPRS	1	220151968	Missense_Mutation	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10	30083793	220151968	29098653	8	3937											
KIDINS220	57498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr2	8919088	8919088	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacgagaaattttcttgcaTtgcttagtccacgactatta	6	8	1	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_020738	exon19	c.A2552G	p.N851S	CTTGCATTGCTTA		78	20	0.26	105	0	0				4	0	0				C	8919088	T	C	8919088	3	2	57	1	0	0	0	0	1	0	0	0	8312	1493	52	4	2811	4	KIDINS220	2	8919088	Missense_Mutation	SNP	T	TCGA-2G-AAKG-01A-11D-A42Y-10		8919088	234280285	9	3938											
XDH	7498	bcgsc.ca	37	chr2	31602747	31602747	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcacctccctgctgtaggGgatctctatggagagcagta	11	11	2	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	XDH	NM_000379	exon13	c.C1228T	p.P410S	TGTAGGGGATCTC		84	0	0	98	0	0		191		1	0	0				A	31602747	G	A	31602747	3	1	57	1	0	0	0	0	1	0	0	0	17485	1232	43	3	2869	3	XDH	2	31602747	Missense_Mutation	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10	22683659	31602747	211596626	10	3939											
PKDCC	91461	bcgsc.ca	37	chr2	42275878	42275878	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatctgggcagctgcgtgcGcgagttcggggtacggaggg	20	9	1	0	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	PKDCC	NM_138370	exon1	c.G539T	p.R180L	GCGTGCGCGAGTT		54	0	0	29	0	0		21		54	0	0				T	42275878	G	T	42275878	3	4	57	1	0	0	0	0	1	0	0	0	12016	1087	38	1	541	1	PKDCC	2	42275878	Missense_Mutation	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10	10673131	42275878	200923495	11	3940											
MRPS5	64969	bcgsc.ca	37	chr2	95753180	95753180	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcacatcttcccagtccagTttgacgtctggaacctcatc	6	14	4	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	MRPS5	NM_031902	exon12	c.A1215G	p.K405K	GTCCAGTTTGACG		86	0	0	113	0	0		52		431	0	0				C	95753180	T	C	95753180	2	2	57	1	0	0	0	0	0	0	0	1	9894	1722	60	4		4	MRPS5	2	95753180	Silent	SNP	T	TCGA-2G-AAKG-01A-11D-A42Y-10	53477302	95753180	147446193	12	3941											
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr2	152484132	152484132	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtagttcttgtagtccacatCgctgactaaggtctggcact	10	10	2	1	rs377180119		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_001271208	exon69	c.G10048A	p.D3350N	CCACATCGCTGAC		171	31	0.18	188	0	0				0	0					T	152484132	C	T	152484132	3	4	57	1	0	0	0	0	1	0	0	0	10348	884	31	1	16094	1	NEB	2	152484132	Missense_Mutation	SNP	C	TCGA-2G-AAKG-01A-11D-A42Y-10	56730952	152484132	90715241	13	3942											
CRYGB	1419	broad.mit.edu	37	chr2	209007463	209007463	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cggcctcagcagatactgccTccccctgtagttgggcatct	10	15	2	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	CRYGB,trunk,malignant_melanoma,+1,1	CRYGB	NM_005210	exon3	c.A427G	p.R143G	ACTGCCTCCCCCT		218	6	0.03	200	1	0.005		24	1	3	0	0				C	209007463	T	C	209007463	3	2	57	1	0	0	0	0	1	0	0	0	3938	1550	54	4	104	4	CRYGB	2	209007463	Missense_Mutation	SNP	T	TCGA-2G-AAKG-01A-11D-A42Y-10	56523331	209007463	34191910	14	3943											
TNS1	7145	bcgsc.ca	37	chr2	218751314	218751314	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacgtggtgcagaaacaaggGcttgttgttcattttgatgg	13	6	1	2	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	TNS1	NM_022648	exon11	c.C547T	p.P183S	ACAAGGGCTTGTT		126	0	0	98	0	0		251		6	0	0				A	218751314	G	A	218751314	3	1	57	1	0	0	0	0	1	0	0	0	16402	1203	42	2	4752	2	TNS1	2	218751314	Missense_Mutation	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10	9743851	218751314	24448059	15	3944											
ALPPL2	251	bcgsc.ca	37	chr2	233271791	233271791	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaggagaacccggacttctGgaaccgccaggcagccgagg	16	12	1	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	ALPPL2	NM_031313	exon2	c.G92C	p.W31S	ACTTCTGGAACCG		75	0	0	80	0	0		36		93	0	0				C	233271791	G	C	233271791	3	2	57	1	0	0	0	0	1	0	0	0	545	1357	47	5	98	5	ALPPL2	2	233271791	Missense_Mutation	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10	14520477	233271791	9927582	16	3945											
PRICKLE2	166336	bcgsc.ca	37	chr3	64142837	64142837	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgctggagtttgctctaaCctcatcgcaggcagcacagc	10	14	2	0	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	PRICKLE2	NM_198859	exon6	c.600+1G>T	.	CTCTAACCTCATC		192	0	0	220	0	0		88		0	0					A	64142837	C	A	64142837	5	1	57	1	0	0	0	0	0	0	1	0	12538	521	18	3	1949	3	PRICKLE2	3	64142837	Splice_Site	SNP	C	TCGA-2G-AAKG-01A-11D-A42Y-10		64142837	133879593	17	3946											
CASR	846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	122002841	122002841	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gactggacgtgccgcctgcgCcagccggcctttggcatcag	14	15	1	0	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_001178065	exon7	c.C2070T	p.R690R	CCTGCGCCAGCCG		157	60	0.38	85	0	0				0	0					T	122002841	C	T	122002841	2	4	57	1	0	0	0	0	0	0	0	1	2700	726	26	2		2	CASR	3	122002841	Silent	SNP	C	TCGA-2G-AAKG-01A-11D-A42Y-10	57860004	122002841	76019589	18	3947											
SEMA5B	54437	broad.mit.edu	37	chr3	122640965	122640967	+	In_Frame_Del	DEL	CGA	CGA	-													agcgccttcaggatggtgccCgactctggaggagaggggga					novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	CGA	CGA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	SEMA5B	NM_001256347	exon12	c.1645_1647del	p.549_549del	GGTGCCCGACTCT		108	8	0.07	47	0	0		303		0	0					-	122640967	CGA	-	122640965	7	5	57	1	0	1	0	1	0	0	0	0	14091	639	23	0	2018	0	SEMA5B	3	122640965	In_Frame_Del	DEL	CGA	TCGA-2G-AAKG-01A-11D-A42Y-10	638124	122640965	75381465	19	3948											
USP46	64854	bcgsc.ca	37	chr4	53492336	53492336	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcctgtttcttctcctccTgaaggatgtccgcaatagtg	8	11	2	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	USP46	NM_022832	exon4	c.A410G	p.Q137R	TCCTCCTGAAGGA		106	0	0	144	0	0		38		2	0	0				C	53492336	T	C	53492336	3	2	57	1	0	0	0	0	1	0	0	0	17136	1580	55	4	714	4	USP46	4	53492336	Missense_Mutation	SNP	T	TCGA-2G-AAKG-01A-11D-A42Y-10		53492336	137661940	20	3949											
FAT4	79633	bcgsc.ca	37	chr4	126237899	126237899	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgatcaacctggtggtcctTtccagcgcgcccacctaccc	9	17	1	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	FAT4_ENST00000394329,larynx,carcinoma,+2,2	FAT4	NM_024582	exon1	c.T333C	p.L111L	GGTCCTTTCCAGC		55	0	0	60	0	0		1752	2	0	0					C	126237899	T	C	126237899	2	2	57	1	0	0	0	0	0	0	0	1	5724	1828	64	4		4	FAT4	4	126237899	Silent	SNP	T	TCGA-2G-AAKG-01A-11D-A42Y-10	72745563	126237899	64916377	21	3950											
SMARCA5	8467	bcgsc.ca	37	chr4	144445568	144445571	+	Frame_Shift_Del	DEL	AGAA	AGAA	-													gaggatgaagagctattaacAgaaagctccaaagcaaccaa					novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	AGAA	AGAA					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	SMARCA5	NM_003601	exon4	c.468_471del	p.156_157del	ATTAACAGAAAGC		240	0	0	371	0	0		73		29	0	0				-	144445571	AGAA	-	144445568	7	5	57	1	0	1	0	1	0	0	0	0	14824	175	7	0	482	0	SMARCA5	4	144445568	Frame_Shift_Del	DEL	AGAA	TCGA-2G-AAKG-01A-11D-A42Y-10	18207669	144445568	46708708	22	3951											
CDC23	8697	broad.mit.edu	37	chr5	137524750	137524750	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtgaagcaggtaggaaaaAgggagcaggcacctcggtgg	18	6	0	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	CDC23	NM_004661	exon16	c.T1711C	p.F571L	GGAAAAAGGGAGC		106	4	0.04	142	1	0.0070422535		46		56	0	0				G	137524750	A	G	137524750	3	3	57	1	0	0	0	0	1	0	0	0	3083	72	3	4	86	4	CDC23	5	137524750	Missense_Mutation	SNP	A	TCGA-2G-AAKG-01A-11D-A42Y-10		137524750	43390510	23	3952											
EBF1	1879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr5	158158144	158158144	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaacctctggaaaccataaTcgatggtgggttcgttgagc	12	8	1	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_024007	exon11	c.A1058G	p.D353G	CCATAATCGATGG		49	21	0.43	80	0	0				1	1	1				C	158158144	T	C	158158144	3	2	57	1	0	0	0	0	1	0	0	0	4906	1435	50	4	741	4	EBF1	5	158158144	Missense_Mutation	SNP	T	TCGA-2G-AAKG-01A-11D-A42Y-10	20633394	158158144	22757116	24	3953											
ABT1	29777	bcgsc.ca	37	chr6	26598339	26598339	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatctttggaacctcaagGtgagaagatagatctttctg	10	6	4	4	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	ABT1	NM_013375	exon2	c.438+1G>T	.	CTCAAGGTGAGAA		100	0	0	105	0	0		39		0	0					T	26598339	G	T	26598339	5	4	57	1	0	0	0	0	0	0	1	0	101	1275	44	3	445	3	ABT1	6	26598339	Splice_Site	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10		26598339	144516728	25	3954											
REV3L	5980	bcgsc.ca	37	chr6	111804004	111804004	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcaccttcttgacaggggCctgggtgaggggggattggc	19	9	1	2	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	REV3L	NM_002912	exon1	c.G88T	p.A30S	CAGGGGCCTGGGT		119	0	0	75	0	0		386		0	0					A	111804004	C	A	111804004	3	1	57	1	0	0	0	0	1	0	0	0	13291	739	26	2	9432	2	REV3L	6	111804004	Missense_Mutation	SNP	C	TCGA-2G-AAKG-01A-11D-A42Y-10	85205665	111804004	59311063	26	3955											
SP4	6671	broad.mit.edu	37	chr7	21468306	21468306	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgttgcagatcagaagaagGaggaggaggaggaggcggca	19	4	1	3	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	SP4,colon,carcinoma,0,1	SP4	NM_003112	exon2	c.G19A	p.E7K	AAGAAGGAGGAGG		39	5	0.13	55	1	0.0181818182		91	1	0	0					A	21468306	G	A	21468306	3	1	57	1	0	0	0	0	1	0	0	0	15019	1175	41	3	25	3	SP4	7	21468306	Missense_Mutation	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10		21468306	137670357	27	3956											
GPNMB	10457	hgsc.bcm.edu;broad.mit.edu	37	chr7	23286485	23286486	+	Frame_Shift_Del	DEL	TC	TC	-													tgagaattcagcatggaatgTctctactatttcctgggatt					novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	TC	TC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_002510	exon1	c.8_9del	p.3_3del	GGAATGTCTCTAC		88	21	0.24	84	0	0				10	0	0				-	23286486	TC	-	23286485	7	5	57	1	0	1	0	1	0	0	0	0	6659	1673	58	0	11	0	GPNMB	7	23286485	Frame_Shift_Del	DEL	TC	TCGA-2G-AAKG-01A-11D-A42Y-10	1818179	23286485	135852178	28	3957											
ZAN	7455	broad.mit.edu	37	chr7	100331729	100331729	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggccaggggggaataaaAggagtccaggctcccaactg	16	9	0	0	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	ZAN	.	.	.	.	AATAAAAGGAGTC		161	4	0.02	148	0	0		658		0	0					G	100331729	A	G	100331729	1	3	57	0	1	0	0	0	0	0	0	0	17572	87	3	4		4	ZAN	7	100331729	RNA	SNP	A	TCGA-2G-AAKG-01A-11D-A42Y-10	77045244	100331729	58806934	29	3958											
WDR60	55112	hgsc.bcm.edu	37	chr7	158704304	158704304	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatttactttctctctcttGgatctaccaccagtaaatga	4	11	4	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_018051	exon12	c.G1524T	p.L508F	TCTCTTGGATCTA		114	5	0.04	132	0	0				4	0	0				T	158704304	G	T	158704304	3	4	57	1	0	0	0	0	1	0	0	0	17370	1339	47	3	1570	3	WDR60	7	158704304	Missense_Mutation	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10	58372575	158704304	434359	30	3959											
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr8	77775665	77775665	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgtaggtgaaacacatgtcGatcctattcagttgcaggca	10	8	1	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_024721	exon11	c.G9715A	p.D3239N	CATGTCGATCCTA		109	28	0.26	93	0	0				0	0					A	77775665	G	A	77775665	3	1	57	1	0	0	0	0	1	0	0	0	17692	1058	37	1	9753	1	ZFHX4	8	77775665	Missense_Mutation	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10		77775665	68588357	31	3960											
SCRIB	23513	bcgsc.ca	37	chr8	144893427	144893427	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctgagtgccacacagcccCcgatctcgggcggcagcgcc	13	18	1	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	SCRIB,larynx,carcinoma,0,1	SCRIB	NM_015356	exon10	c.G995T	p.G332V	CAGCCCCCGATCT		140	0	0	71	0	0		192	1	66	0	0				A	144893427	C	A	144893427	3	1	57	1	0	0	0	0	1	0	0	0	13990	623	22	3	4084	3	SCRIB	8	144893427	Missense_Mutation	SNP	C	TCGA-2G-AAKG-01A-11D-A42Y-10	67117762	144893427	1470595	32	3961											
SMARCA2	6595	bcgsc.ca	37	chr9	2115838	2115838	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acaggatctgcaggcccaagAccgagctcaccgcatcgggc	12	15	2	1	rs281875240	alternate_allele	TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	SMARCA2	NM_139045	exon25	c.A3473C	p.D1158A	CCCAAGACCGAGC		229	0	0	199	0	0		313		27	0	0				C	2115838	A	C	2115838	3	2	57	1	0	0	0	0	1	0	0	0	14822	275	10	4	3567	4	SMARCA2	9	2115838	Missense_Mutation	SNP	A	TCGA-2G-AAKG-01A-11D-A42Y-10		2115838	139097593	33	3962											
CSGALNACT2	55454	hgsc.bcm.edu	37	chr10	43659372	43659372	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaagaatttaatcgtggaCgaggactaaatgtgggtgcc	13	5	0	2	rs76607193	bycluster;byfrequency	TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	CSGALNACT2,trunk,malignant_melanoma,0,1	CSGALNACT2	NM_018590	exon5	c.C1039T	p.R347X	CGTGGACGAGGAC		81	4	0.05	101	0	0	0.003	0	1	9	0	0				T	43659372	C	T	43659372	4	4	57	1	0	0	0	0	0	1	0	0	3964	528	19	1	1053	1	CSGALNACT2	10	43659372	Nonsense_Mutation	SNP	C	TCGA-2G-AAKG-01A-11D-A42Y-10		43659372	91875375	34	3963											
FAM21B	55747	broad.mit.edu	37	chr10	47948782	47948782	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgatctgcacaggccgcaCctgaaccaagatttgaacac	9	14	1	3	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	FAM21B	NM_018232	exon29	c.C3691T	p.P1231S	GCCGCACCTGAAC		433	133	0.31	659	0	0		31		59	25	0.42				T	47948782	C	T	47948782	3	4	57	1	0	0	0	0	1	0	0	0	5572	507	18	3	3805	3	FAM21B	10	47948782	Missense_Mutation	SNP	C	TCGA-2G-AAKG-01A-11D-A42Y-10	4289410	47948782	87585965	35	3964											
PTDSS2	81490	hgsc.bcm.edu;broad.mit.edu	37	chr11	488541	488541	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgcagtggatcatggacGtgctcgtctgcaacgggctg	14	12	2	0	rs34809643	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_030783	exon8	c.G748T	p.V250L	ATGGACGTGCTCG		66	4	0.06	46	0	0				88	0	0				T	488541	G	T	488541	3	4	57	1	0	0	0	0	1	0	0	0	12785	1145	40	1	778	1	PTDSS2	11	488541	Missense_Mutation	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10		488541	134517975	36	3965											
MUC6	4588	bcgsc.ca	37	chr11	1016801	1016801	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgggaagtgtggtctgaggGtgtgatggggttggataggt	22	1	1	2	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	MUC6	NM_005961	exon31	c.C6000G	p.H2000Q	CTGAGGGTGTGAT		322	11	0.03	386	6	0.0155440415		408		1	0	0				C	1016801	G	C	1016801	3	2	57	1	0	0	0	0	1	0	0	0	10027	1252	44	5	1331	5	MUC6	11	1016801	Missense_Mutation	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10	528260	1016801	133989715	37	3966											
ASRGL1	80150	broad.mit.edu	37	chr11	62105556	62105556	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agccgccaccgtgggctacgGcatcctccgggagggcggga	17	14	0	0	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	ASRGL1	NM_001083926	exon2	c.G107A	p.G36D	GCTACGGCATCCT		73	4	0.05	52	0	0		25		142	0	0				A	62105556	G	A	62105556	3	1	57	1	0	0	0	0	1	0	0	0	1059	1203	42	2	109	2	ASRGL1	11	62105556	Missense_Mutation	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10	61088755	62105556	72900960	38	3967											
MTA2	9219	bcgsc.ca	37	chr11	62365527	62365527	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgatctgggatctcagcttgGtatttgcaaccaactctaat	8	10	3	0	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	MTA2	NM_004739	exon6	c.C459T	p.Y153Y	AGCTTGGTATTTG		117	0	0	128	0	0		54		31	0	0				A	62365527	G	A	62365527	2	1	57	1	0	0	0	0	0	0	0	1	9956	1256	44	3		3	MTA2	11	62365527	Silent	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10	259971	62365527	72640989	39	3968											
MAP4K2	5871	bcgsc.ca	37	chr11	64566925	64566925	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggtcagtttccttcctgcGtggggcgccaaatttcacct	11	12	2	0	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	MAP4K2	NM_004579	exon14	c.C1021G	p.R341G	TCCTGCGTGGGGC		107	0	0	109	0	0		83		29	0	0				C	64566925	G	C	64566925	3	2	57	1	0	0	0	0	1	0	0	0	9309	1145	40	5	1517	5	MAP4K2	11	64566925	Missense_Mutation	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10	2201398	64566925	70439591	40	3969											
PPP1CA	5499	broad.mit.edu	37	chr11	67168607	67168607	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaatctcccgggatttcAggcacagaccgcggatctcg	11	12	3	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	PPP1CA	NM_001008709	exon2	c.T152C	p.L51P	GATTTCAGGCACA		84	4	0.05	85	0	0		83		456	0	0				G	67168607	A	G	67168607	3	3	57	1	0	0	0	0	1	0	0	0	12397	188	7	4	897	4	PPP1CA	11	67168607	Missense_Mutation	SNP	A	TCGA-2G-AAKG-01A-11D-A42Y-10	2601682	67168607	67837909	41	3970											
TAS2R8	50836	bcgsc.ca	37	chr12	10959286	10959286	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	acattaaggcaggtggtaatCcacatatttaagtagttggc	10	6	0	0	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	TAS2R8	NM_023918	exon1	c.G294C	p.W98C	GGTAATCCACATA		180	0	0	96	0	0		42		0	0					G	10959286	C	G	10959286	3	3	57	1	0	0	0	0	1	0	0	0	15643	856	30	5	638	5	TAS2R8	12	10959286	Missense_Mutation	SNP	C	TCGA-2G-AAKG-01A-11D-A42Y-10		10959286	122892609	42	3971											
ABCC9	10060	bcgsc.ca	37	chr12	22061069	22061069	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taaagtactgaattggcgcaAggagcacaatgacagctgca	11	8	0	2	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	ABCC9	NM_005691	exon9	c.T1397C	p.L466P	GGCGCAAGGAGCA		404	0	0	303	1	0.00330033		411		1	0	0				G	22061069	A	G	22061069	3	3	57	1	0	0	0	0	1	0	0	0	59	72	3	4	3514	4	ABCC9	12	22061069	Missense_Mutation	SNP	A	TCGA-2G-AAKG-01A-11D-A42Y-10	11101783	22061069	111790826	43	3972											
FAM101A	144347	broad.mit.edu	37	chr12	124798964	124798964	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggagcactttccggaccAccctgcactgcagcctgggc	11	17	0	0	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	FAM101A	NM_181709	exon3	c.A301C	p.T101P	CGGACCACCCTGC		52	13	0.25	29	3	0.1034482759		10		11	0	0				C	124798964	A	C	124798964	3	2	57	1	0	0	0	0	1	0	0	0	5411	159	6	4	307	4	FAM101A	12	124798964	Missense_Mutation	SNP	A	TCGA-2G-AAKG-01A-11D-A42Y-10	102737895	124798964	9052931	44	3973											
L2HGDH	79944	bcgsc.ca	37	chr14	50713845	50713847	+	In_Frame_Del	DEL	AGG	AGG	-													gcaatggaagaagtagcagcAggagaaggtgcatttctcac					novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	AGG	AGG					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	L2HGDH	NM_024884	exon10	c.1321_1323del	p.441_441del	AGCAGCAGGAGAA		164	0	0	228	0	0		33		9	0	0				-	50713847	AGG	-	50713845	7	5	57	1	0	1	0	1	0	0	0	0	8628	175	7	0	72	0	L2HGDH	14	50713845	In_Frame_Del	DEL	AGG	TCGA-2G-AAKG-01A-11D-A42Y-10		50713845	56635695	45	3974											
SERPINA10	51156	bcgsc.ca	37	chr14	94756510	94756510	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccttaaagagggaaggcaGgagcccgggcttggtgggct	17	9	0	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	SERPINA10	NM_001100607	exon2	c.C421T	p.L141L	AAGGCAGGAGCCC		145	0	0	135	0	0		83		1	0	0				A	94756510	G	A	94756510	2	1	57	1	0	0	0	0	0	0	0	1	14140	991	35	3		3	SERPINA10	14	94756510	Silent	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10	44042665	94756510	12593030	46	3975											
AHNAK2	113146	bcgsc.ca	37	chr14	105416870	105416870	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggacaggtccccctccaGctgcgcaccatccagctttg	10	17	0	0	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	AHNAK2_ENST00000333244,NS,carcinoma,+2,1	AHNAK2	NM_138420	exon7	c.C4918A	p.L1640M	CCTCCAGCTGCGC		230	0	0	172	0	0		719	1	0	0					T	105416870	G	T	105416870	3	4	57	1	0	0	0	0	1	0	0	0	412	962	34	2	12473	2	AHNAK2	14	105416870	Missense_Mutation	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10	10660360	105416870	1932670	47	3976											
DISP2	85455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr15	40656718	40656718	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggactgttgggggcccgGctgcccgacttctccaagcc	14	15	1	0	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_033510	exon4	c.G576A	p.R192R	GGCCCGGCTGCCC		73	35	0.48	54	0	0				1	1	1				A	40656718	G	A	40656718	2	1	57	1	0	0	0	0	0	0	0	1	4568	1190	42	2		2	DISP2	15	40656718	Silent	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10		40656718	61874674	48	3977											
EIF3J	8669	hgsc.bcm.edu	37	chr15	44829418	44829418	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcggcggcggcggcggcggGggactcggactcctggggtg	24	11	0	0	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_003758	exon1	c.G26C	p.G9A	CGGCGGGGGACTC		396	76	0.19	197	0	0				2	0	0				C	44829418	G	C	44829418	3	2	57	1	0	0	0	0	1	0	0	0	5048	1232	43	5	28	5	EIF3J	15	44829418	Missense_Mutation	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10	4172700	44829418	57701974	49	3978											
MYEF2	50804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr15	48450208	48450208	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acgtggtaattgtggtgtttTaccatcatgtgaacggtact	11	6	1	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_016132	exon9	c.A967G	p.K323E	GTGTTTTACCATC		129	28	0.22	176	0	0				1	0	0				C	48450208	T	C	48450208	3	2	57	1	0	0	0	0	1	0	0	0	10071	1763	61	4	871	4	MYEF2	15	48450208	Missense_Mutation	SNP	T	TCGA-2G-AAKG-01A-11D-A42Y-10	3620790	48450208	54081184	50	3979											
USP8	9101	hgsc.bcm.edu	37	chr15	50782530	50782530	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cactgttcatatgtacccacCggaaatggctccttcatctg	7	13	3	0	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_001128610	exon14	c.C2042T	p.P681L	ACCCACCGGAAAT		154	7	0.05	172	0	0				18	0	0				T	50782530	C	T	50782530	3	4	57	1	0	0	0	0	1	0	0	0	17148	652	23	1	2092	1	USP8	15	50782530	Missense_Mutation	SNP	C	TCGA-2G-AAKG-01A-11D-A42Y-10	2332322	50782530	51748862	51	3980											
ZNF592	9640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr15	85326876	85326876	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agagttctaaaggtagccccAaaatgcccaagtcaccaaag	8	11	2	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_014630	exon4	c.A970C	p.K324Q	AGCCCCAAAATGC		117	25	0.21	146	0	0				12	2	0.17				C	85326876	A	C	85326876	3	2	57	1	0	0	0	0	1	0	0	0	18078	131	5	4	972	4	ZNF592	15	85326876	Missense_Mutation	SNP	A	TCGA-2G-AAKG-01A-11D-A42Y-10	34544346	85326876	17204516	52	3981											
ZNF592	9640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr15	85327404	85327404	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcccctgccaacctcctgCccaaagccgtgcacttggcc	9	19	0	0	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_014630	exon4	c.C1498A	p.P500T	CTCCTGCCCAAAG		69	12	0.17	68	0	0				25	13	0.52				A	85327404	C	A	85327404	3	1	57	1	0	0	0	0	1	0	0	0	18078	739	26	2	1500	2	ZNF592	15	85327404	Missense_Mutation	SNP	C	TCGA-2G-AAKG-01A-11D-A42Y-10	528	85327404	17203988	53	3982											
NMRAL1	57407	bcgsc.ca	37	chr16	4519318	4519318	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcagggccagctccatgatGacctggtcatcttggtctcc	10	13	4	2	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	NMRAL1	NM_020677	exon3	c.C189T	p.V63V	CATGATGACCTGG		59	0	0	55	0	0		31		22	0	0				A	4519318	G	A	4519318	2	1	57	1	0	0	0	0	0	0	0	1	10547	1277	45	3		3	NMRAL1	16	4519318	Silent	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10		4519318	85835435	54	3983											
SLC12A3	6559	bcgsc.ca	37	chr16	56913028	56913028	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tctggggtcctgaatgacacAgtgacccctggctggggtgc	15	11	1	3	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	SLC12A3	NM_001126108	exon10	c.A1224T	p.T408T	TGACACAGTGACC		77	0	0	74	0	0		99		1	0	0				T	56913028	A	T	56913028	2	4	57	1	0	0	0	0	0	0	0	1	14438	175	7	5		5	SLC12A3	16	56913028	Silent	SNP	A	TCGA-2G-AAKG-01A-11D-A42Y-10	52393710	56913028	33441725	55	3984											
HSF4	3299	hgsc.bcm.edu;broad.mit.edu	37	chr16	67203680	67203680	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggcccggaagccagtcccTccccctaagaccccgcgcct	10	20	0	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_001040667	exon15	c.T1471C	p.S491P	AGTCCCTCCCCCT		53	6	0.11	41	0	0				5	0	0				C	67203680	T	C	67203680	3	2	57	1	0	0	0	0	1	0	0	0	7438	1551	54	4	1535	4	HSF4	16	67203680	Missense_Mutation	SNP	T	TCGA-2G-AAKG-01A-11D-A42Y-10	10290652	67203680	23151073	56	3985											
DPH1	1801	broad.mit.edu	37	chr17	1939269	1939269	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccctgtgcccgcaggttcaCggaggccgaagtgatggtga	15	12	1	2	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	DPH1	NM_001383	exon4	c.C299T	p.T100M	GGTTCACGGAGGC		85	3	0.04	58	0	0		32		42	0	0				T	1939269	C	T	1939269	3	4	57	1	0	0	0	0	1	0	0	0	4746	536	19	1	313	1	DPH1	17	1939269	Missense_Mutation	SNP	C	TCGA-2G-AAKG-01A-11D-A42Y-10		1939269	79255941	57	3986											
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	10309436	10309436	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgttcttgttataatttggGctaatttttcatctctcatt	6	6	4	0	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	MYH8,NS,carcinoma,+1,1	MYH8	NM_002472	exon21	c.C2354T	p.A785V	ATTTGGGCTAATT		65	15	0.23	89	0	0		1	1	0	0					A	10309436	G	A	10309436	3	1	57	1	0	0	0	0	1	0	0	0	10088	1203	42	2	3539	2	MYH8	17	10309436	Missense_Mutation	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10	8370167	10309436	70885774	58	3987											
GPATCH8	23131	bcgsc.ca	37	chr17	42513867	42513867	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatttccatgcgacccatGcccatgacatcatacttgac	5	15	1	2	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	GPATCH8	NM_001002909	exon4	c.C240A	p.G80G	ACCCATGCCCATG		54	0	0	65	0	0		114		0	0					T	42513867	G	T	42513867	2	4	57	1	0	0	0	0	0	0	0	1	6633	1306	46	2		2	GPATCH8	17	42513867	Silent	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10	32204431	42513867	38681343	59	3988											
USP36	57602	bcgsc.ca	37	chr17	76810500	76810500	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaagcctctcaccttcacGtagcagtaatagtgcccggc	8	15	2	0	rs139221124	bycluster;byfrequency;by1000genomes	TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	USP36	NM_025090	exon11	c.C1158T	p.Y386Y	CTTCACGTAGCAG		31	0	0	39	0	0		243		30	0	0				A	76810500	G	A	76810500	2	1	57	1	0	0	0	0	0	0	0	1	17126	1140	40	1		1	USP36	17	76810500	Silent	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10	34296633	76810500	4384710	60	3989											
FEM1A	55527	broad.mit.edu	37	chr19	4793691	4793691	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcaggggcccacatggacGccaccaatgccttcaagaag	11	13	1	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	FEM1A	NM_018708	exon1	c.G1825T	p.A609S	ATGGACGCCACCA		30	3	0.1	21	0	0		41		15	0	0				T	4793691	G	T	4793691	3	4	57	1	0	0	0	0	1	0	0	0	5841	1087	38	1	1827	1	FEM1A	19	4793691	Missense_Mutation	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10		4793691	54335292	61	3990											
ANKLE1	126549	broad.mit.edu	37	chr19	17397500	17397501	+	Frame_Shift_Del	DEL	TT	TT	-													tgtgtgtgtgtgtgtgtgtgTttgtgtgtgtgtgtgtgtgt					rs10606406	alternate_allele	TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	TT	TT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	ANKLE1	.	.	.	.	TGTGTGTTTGTGT		13	8	0.62	18	0	0		27		8	0	0				-	17397501	TT	-	17397500	7	5	57	1	0	1	0	1	0	0	0	0	628	1740	60	0		0	ANKLE1	19	17397500	Frame_Shift_Del	DEL	TT	TCGA-2G-AAKG-01A-11D-A42Y-10	12603809	17397500	41731483	62	3991											
LYPD4	147719	bcgsc.ca	37	chr19	42342975	42342975	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctcaatgaacactagcGtctcctcgcagccctcttgc	7	16	3	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	LYPD4	NM_173506	exon3	c.C191A	p.T64K	ACTAGCGTCTCCT		46	0	0	50	0	0		30		0	0					T	42342975	G	T	42342975	3	4	57	1	0	0	0	0	1	0	0	0	9157	1145	40	1	561	1	LYPD4	19	42342975	Missense_Mutation	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10	24945475	42342975	16786008	63	3992											
SYMPK	8189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr19	46345588	46345588	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctgctcggcatgttgcggGcgatctcggcctgaggtgtg	17	10	1	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_004819	exon9	c.C1007G	p.A336G	TTGCGGGCGATCT		64	19	0.3	90	0	0				76	35	0.46				C	46345588	G	C	46345588	3	2	57	1	0	0	0	0	1	0	0	0	15495	1203	42	5	2893	5	SYMPK	19	46345588	Missense_Mutation	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10	4002613	46345588	12783395	64	3993											
IZUMO1	284359	hgsc.bcm.edu;broad.mit.edu	37	chr19	49248527	49248527	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagcaaactccaggaccccTtttgcagtgtggcctcatct	8	14	3	0	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	NM_182575	exon3	c.A254G	p.K85R	GACCCCTTTTGCA		77	4	0.05	121	0	0				0	0					C	49248527	T	C	49248527	3	2	57	1	0	0	0	0	1	0	0	0	7976	1609	56	4	830	4	IZUMO1	19	49248527	Missense_Mutation	SNP	T	TCGA-2G-AAKG-01A-11D-A42Y-10	2902939	49248527	9880456	65	3994											
GDF5	8200	bcgsc.ca	37	chr20	34025393	34025394	+	Frame_Shift_Ins	INS	-	-	T													ggagggtgtcctggcttgggINSttcagggccgcccggtctgg					novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	GDF5	NM_000557	exon1	c.316_317insA	p.P106fs	GCTTGGGTTCAGG		80	0	0	57	0	0		66		0	0					T	34025394	-	T	34025393	7	5	57	1	0	1	1	0	0	0	0	0	6357	1261	44	0	1197	0	GDF5	20	34025393	Frame_Shift_Ins	INS	-	TCGA-2G-AAKG-01A-11D-A42Y-10		34025393	29000127	66	3995											
APOBEC3A	200315	hgsc.bcm.edu	37	chr22	39357586	39357586	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aacacacacgtgagactgcgTatcttcgctgcccgcatcta	8	14	2	1	rs202076860	bycluster	TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	APOBEC3A,caecum,carcinoma,+1,1	APOBEC3A	NM_145699	exon3	c.T369C	p.R123R	ACTGCGTATCTTC		49	5	0.1	65	2	0.0307692308	0.001	1	1	7	0	0				C	39357586	T	C	39357586	2	2	57	1	0	0	0	0	0	0	0	1	786	1625	57	4		4	APOBEC3A	22	39357586	Silent	SNP	T	TCGA-2G-AAKG-01A-11D-A42Y-10		39357586	11946980	67	3996											
ZC3H7B	23264	bcgsc.ca	37	chr22	41742035	41742035	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacaagcaggactgtaagtaCggggataactgcaccttcgc	11	10	0	0	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	ZC3H7B	NM_017590	exon14	c.C1488T	p.Y496Y	TAAGTACGGGGAT		62	0	0	51	0	0		82		20	0	0				T	41742035	C	T	41742035	2	4	57	1	0	0	0	0	0	0	0	1	17631	547	19	1		1	ZC3H7B	22	41742035	Silent	SNP	C	TCGA-2G-AAKG-01A-11D-A42Y-10	2384449	41742035	9562531	68	3997											
SELO	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr22	50655406	50655406	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggatgtcattccagagcccGgctggacaaggacctggaag	14	11	1	1	novel		TCGA-2G-AAKG-01A-11D-A42Y-10	TCGA-2G-AAKG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	87b627bf-e42a-4f5f-9e22-7e8a479d5b29	86018e7d-245a-41de-93d6-ff5b5d81db55	.	.	.	.	.	.	GAGCCCGGCTGGA		47	13	0.28	24	0	0				38	8	0.21				A	50655406	G	A	50655406	3	1	57	1	0	0	0	0	1	0	0	0	14071	1116	39	1	1724	1	SELO	22	50655406	Missense_Mutation	SNP	G	TCGA-2G-AAKG-01A-11D-A42Y-10	8913371	50655406	649160	69	3998											
PADI4	23569	broad.mit.edu	37	chr1	17690071	17690071	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccccaagcccttcgggcccGtcatcaacggccgctgctgc	10	19	2	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	PADI4	NM_012387	exon16	c.G1813A	p.V605I	GGGCCCGTCATCA		199	4	0.02	212	0	0		70		3	0	0				A	17690071	G	A	17690071	3	1	58	1	0	0	0	0	1	0	0	0	11426	1145	40	1	1875	1	PADI4	1	17690071	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10		17690071	231560550	1	3999											
HSPG2	3339	mdanderson.org	37	chr1	22149853	22149853	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccccggcctgggcgcggtGctgcaggtccaggggctgtg	20	13	0	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_005529	exon97	c.C13132A	p.H4378N	CGCGGTGCTGCAG		26	3	0.12	33	0	0				136	0	0				T	22149853	G	T	22149853	3	4	58	1	0	0	0	0	1	0	0	0	7473	1319	46	2	47	2	HSPG2	1	22149853	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	4459782	22149853	227100768	2	4000											
BAI2	576	broad.mit.edu	37	chr1	32222329	32222329	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggcagagcaggcactggGggcggggtcgaaggcggtgg	23	8	0	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	BAI2	NM_001703	exon4	c.C109A	p.P37T	CACTGGGGGCGGG		216	4	0.02	195	0	0		128		1	0	0				T	32222329	G	T	32222329	3	4	58	1	0	0	0	0	1	0	0	0	1297	1232	43	3	4768	3	BAI2	1	32222329	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	10072476	32222329	217028292	3	4001											
C1orf173	127254	mdanderson.org	37	chr1	75086440	75086440	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcaagtagtttgcctttGtagacacaaaggttttcccc	7	9	1	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001002912	exon8	c.C978A	p.Y326X	GCCTTTGTAGACA		123	5	0.04	130	0	0				0	0					T	75086440	G	T	75086440	4	4	58	1	0	0	0	0	0	1	0	0	2027	1372	48	3	3642	3	C1orf173	1	75086440	Nonsense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	42864111	75086440	174164181	4	4002											
LHX8	431707	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	75602877	75602877	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtccatggcctcgggctcCggctgccctcctggcaagtg	14	16	0	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001001933	exon4	c.C198A	p.S66S	GGGCTCCGGCTGC		255	18	0.07	273	0	0				13	1	0.08				A	75602877	C	A	75602877	2	1	58	1	0	0	0	0	0	0	0	1	8815	639	23	1		1	LHX8	1	75602877	Silent	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	516437	75602877	173647744	5	4003											
AMY1A	278	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	104297234	104297234	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agcctctatacttaccttctGggatgctaggtagaaaacca	8	10	2	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	AMY1C,NS,carcinoma,0,1	AMY1A	NM_001008221	exon7	c.G992C	p.W331S	CCTTCTGGGATGC		864	20	0.02	937	0	0		2	1	0	0					C	104297234	G	C	104297234	3	2	58	1	0	0	0	0	1	0	0	0	587	1357	47	5	4166	5	AMY1A	1	104297234	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	28694357	104297234	144953387	6	4004											
EPS8L3	79574	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	110300123	110300123	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagttcagggacttgaagaGgatgtgtacgagctcagggg	17	5	2	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_139053	exon11	c.C952T	p.L318F	TGAAGAGGATGTG		119	11	0.09	123	0	0				0	0					A	110300123	G	A	110300123	3	1	58	1	0	0	0	0	1	0	0	0	5225	1000	35	3	868	3	EPS8L3	1	110300123	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	6002889	110300123	138950498	7	4005											
APOA2	336	hgsc.bcm.edu;bcgsc.ca	37	chr1	161192313	161192313	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgacttttcaaagtaagacCtggataggtgaggggattag	13	4	1	3	rs76162486	bycluster	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001643	exon5	c.186-1G>A	.	TAAGACCTGGATA		161	8	0.05	196	0	0				0	0					T	161192313	C	T	161192313	5	4	58	1	0	0	0	0	0	0	1	0	779	695	24	3	121	3	APOA2	1	161192313	Splice_Site	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	50892190	161192313	88058308	8	4006											
TNR	7143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	175328773	175328773	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtgtgtaagaacaatgacGtagttctccacctcacccac	7	12	2	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_003285	exon15	c.C2949T	p.Y983Y	AATGACGTAGTTC		113	11	0.1	132	0	0				0	0					A	175328773	G	A	175328773	2	1	58	1	0	0	0	0	0	0	0	1	16397	1140	40	1		1	TNR	1	175328773	Silent	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	14136460	175328773	73921848	9	4007											
C1orf35	79169	mdanderson.org	37	chr1	228288913	228288913	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccgcttcctcctcttacaGcagggggagttggagtcgga	13	13	1	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_024319	exon8	c.C711A	p.C237X	CTTACAGCAGGGG		44	3	0.07	65	0	0				102	0	0				T	228288913	G	T	228288913	4	4	58	1	0	0	0	0	0	1	0	0	2052	963	34	2	84	2	C1orf35	1	228288913	Nonsense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	52960140	228288913	20961708	10	4008											
OBSCN	84033	hgsc.bcm.edu	37	chr1	228503691	228503691	+	Frame_Shift_Del	DEL	G	G	-													ccgtgcacacctcggagaacGccgaggtggtcttcttcgag					novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	OBSCN,colon,carcinoma,0,1	OBSCN	NM_001271223	exon61	c.16026delC	p.N5342fs	GAGAACGCCGAGG		151	10	0.07	187	0	0		2142		0	0					-	228503691	G	-	228503691	7	5	58	1	0	1	0	1	0	0	0	0	10859	1087	38	0	13350	0	OBSCN	1	228503691	Frame_Shift_Del	DEL	G	TCGA-2G-AAKH-01A-11D-A42Y-10	214778	228503691	20746930	11	4009	8	2									
OBSCN	84033	bcgsc.ca	37	chr1	228503692	228503692	+	Missense_Mutation	SNP	C	C	A													cgtgcacacctcggagaacgCcgaggtggtcttcttcgaga					novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	OBSCN	NM_001271223	exon61	c.C16028A	p.A5343D	AGAACGCCGAGGT		154	12	0.08	187	0	0		2142		0	0					A	228503692	C	A	228503692	3	1	58	1	0	0	0	0	1	0	0	0	10859	739	26	2	13351	2	OBSCN	1	228503692	Missense_Mutation	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	1	228503692	20746929	12	4010	8	2									
GNG4	2786	broad.mit.edu	37	chr1	235747114	235747114	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgggagatgctagtggtgcTgttattagacatgccctctt	12	7	1	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	GNG4	NM_001098721	exon3	c.A25G	p.S9G	TGGTGCTGTTATT		113	3	0.03	109	1	0.0091743119		18		17	0	0				C	235747114	T	C	235747114	3	2	58	1	0	0	0	0	1	0	0	0	6570	1580	55	4	210	4	GNG4	1	235747114	Missense_Mutation	SNP	T	TCGA-2G-AAKH-01A-11D-A42Y-10	7243422	235747114	13503507	13	4011											
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	235872530	235872530	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatggatgaggataaaaagaCgaggatcattacgcgcccaa	12	7	1	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_000081	exon44	c.G10004A	p.R3335H	AAAAGACGAGGAT		210	27	0.13	268	0	0				13	3	0.23				T	235872530	C	T	235872530	3	4	58	1	0	0	0	0	1	0	0	0	9173	536	19	1	1441	1	LYST	1	235872530	Missense_Mutation	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	125416	235872530	13378091	14	4012											
TAF1B	9014	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	10016027	10016027	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctggatctctggatggagTtgaatactcacaacgaaagg	11	8	3	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_005680	exon7	c.T587A	p.V196D	ATGGAGTTGAATA		117	9	0.08	123	0	0				80	13	0.16				A	10016027	T	A	10016027	3	1	58	1	0	0	0	0	1	0	0	0	15576	1725	60	5	613	5	TAF1B	2	10016027	Missense_Mutation	SNP	T	TCGA-2G-AAKH-01A-11D-A42Y-10		10016027	233183346	15	4013											
GDF7	151449	mdanderson.org	37	chr2	20870822	20870822	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggccgggacgcggacagcGcagggcagcggcgggggcgc	22	12	0	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_182828	exon2	c.G990T	p.A330A	GACAGCGCAGGGC		28	2	0.07	23	0	0				0	0					T	20870822	G	T	20870822	2	4	58	1	0	0	0	0	0	0	0	1	6359	1074	38	1		1	GDF7	2	20870822	Silent	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	10854795	20870822	222328551	16	4014											
ALK	238	mdanderson.org	37	chr2	29754982	29754982	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttgagaaggagaaaggagCctggaaagagacagggaaaa	16	3	0	3	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_004304	exon4	c.G953A	p.G318D	AAGGAGCCTGGAA		69	4	0.06	79	0	0				0	0					T	29754982	C	T	29754982	3	4	58	1	0	0	0	0	1	0	0	0	521	753	26	2	4013	2	ALK	2	29754982	Missense_Mutation	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	8884160	29754982	213444391	17	4015											
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	61566736	61566736	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gactatatcccacaacaaagTatttcctttcttgcaaacat	3	11	1	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_014709	exon17	c.A2581G	p.T861A	ACAAAGTATTTCC		530	68	0.13	570	0	0				8	2	0.25				C	61566736	T	C	61566736	3	2	58	1	0	0	0	0	1	0	0	0	17124	1638	57	4	8315	4	USP34	2	61566736	Missense_Mutation	SNP	T	TCGA-2G-AAKH-01A-11D-A42Y-10	31811754	61566736	181632637	18	4016											
ETAA1	54465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	67630985	67630985	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaacttactaggtagtgaaCcttttgctatgcaaaatatc	6	7	0	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_019002	exon5	c.C1171T	p.P391S	AGTGAACCTTTTG		212	28	0.13	328	0	0				16	3	0.19				T	67630985	C	T	67630985	3	4	58	1	0	0	0	0	1	0	0	0	5295	507	18	3	1189	3	ETAA1	2	67630985	Missense_Mutation	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	6064249	67630985	175568388	19	4017											
CNNM4	26504	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	97475063	97475063	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ccttcctcatgcagatcactCggcagcagtaccagaacggg	10	14	2	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_020184	exon7	c.C2137G	p.R713G	ATCACTCGGCAGC		112	6	0.05	112	0	0				56	3	0.05				G	97475063	C	G	97475063	3	3	58	1	0	0	0	0	1	0	0	0	3638	875	31	5	2163	5	CNNM4	2	97475063	Missense_Mutation	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	29844078	97475063	145724310	20	4018											
GPR45	11250	broad.mit.edu;mdanderson.org	37	chr2	105858882	105858882	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgctgggctacacggagctCcccgctgaccgcgcctacgt	13	16	0	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	GPR45,medulla,primitive_neuroectodermal_tumour-medulloblastoma,+2,1	GPR45	NM_007227	exon1	c.C567T	p.L189L	GGAGCTCCCCGCT		41	3	0.07	61	0	0		73	1	0	0					T	105858882	C	T	105858882	2	4	58	1	0	0	0	0	0	0	0	1	6735	842	30	3		3	GPR45	2	105858882	Silent	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	8383819	105858882	137340491	21	4019											
ALPPL2	251	mdanderson.org	37	chr2	233274571	233274571	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctgctgctggggacggccActgctccctgagtgtcccgt	14	14	0	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_031313	exon11	c.A1588T	p.T530S	ACGGCCACTGCTC		26	3	0.12	21	0	0				381	1	0				T	233274571	A	T	233274571	3	4	58	1	0	0	0	0	1	0	0	0	545	159	6	5	1630	5	ALPPL2	2	233274571	Missense_Mutation	SNP	A	TCGA-2G-AAKH-01A-11D-A42Y-10	127415689	233274571	9924802	22	4020											
ANO7	50636	mdanderson.org	37	chr2	242149033	242149033	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgcatgctggccggctctGtggtgatcgtggtgatggta	17	9	1	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001001891	exon13	c.G1504T	p.V502L	GGCTCTGTGGTGA		42	3	0.07	59	0	0				0	0					T	242149033	G	T	242149033	3	4	58	1	0	0	0	0	1	0	0	0	696	1377	48	3	1626	3	ANO7	2	242149033	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	8874462	242149033	1050340	23	4021											
SETD5	55209	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	9495475	9495475	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gactcaaacatcatctgtacCccaagagactagaactcagc	6	13	4	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	SETD5_ENST00000402198,NS,carcinoma,+1,2	SETD5_ENST00000402198	NM_001080517	exon17	c.C2399A	p.P800H	CTGTACCCCAAGA		245	11	0.04	236	0	0		1	2	116	10	0.09				A	9495475	C	A	9495475	3	1	58	1	0	0	0	0	1	0	0	0	14187	623	22	3	2457	3	SETD5	3	9495475	Missense_Mutation	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10		9495475	188526955	24	4022											
FLNB	2317	broad.mit.edu	37	chr3	58116558	58116558	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggctcaggcgtccgagcccGtgtcctgcagtccttcacgg	14	15	2	0	rs199590811	bycluster;by1000genomes	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	FLNB	NM_001457	exon25	c.G4313A	p.R1438H	GAGCCCGTGTCCT		241	4	0.02	215	0	0		430		229	0	0				A	58116558	G	A	58116558	3	1	58	1	0	0	0	0	1	0	0	0	5966	1145	40	1	4411	1	FLNB	3	58116558	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	48621083	58116558	139905872	25	4023											
LSAMP	4045	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	115738431	115738431	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccatgcagaccagagtcaCgttgctgccctcattcacag	10	14	3	2	rs143751711		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	LSAMP,NS,carcinoma,0,1	LSAMP	NM_002338	exon3	c.G445A	p.V149M	GAGTCACGTTGCT		76	6	0.08	118	0	0		62	1	8	2	0.25				T	115738431	C	T	115738431	3	4	58	1	0	0	0	0	1	0	0	0	9092	536	19	1	591	1	LSAMP	3	115738431	Missense_Mutation	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	57621873	115738431	82283999	26	4024											
P2RY13	53829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	151045875	151045875	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	catggtagcttttctgtgaaTtttttacataagaatatgta	7	4	1	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_176894	exon2	c.A969C	p.K323N	TGTGAATTTTTTA		99	21	0.21	165	0	0				1	0	0				G	151045875	T	G	151045875	3	3	58	1	0	0	0	0	1	0	0	0	11396	1490	52	4	99	4	P2RY13	3	151045875	Missense_Mutation	SNP	T	TCGA-2G-AAKH-01A-11D-A42Y-10	35307444	151045875	46976555	27	4025											
NSUN7	79730	mdanderson.org	37	chr4	40778207	40778207	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ataatacctcaaaagtatttGtgtgtggagtacaatcacaa	7	6	2	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_024677	exon7	c.G967A	p.V323M	GTATTTGTGTGTG		55	4	0.07	72	0	0				8	1	0.13				A	40778207	G	A	40778207	3	1	58	1	0	0	0	0	1	0	0	0	10730	1377	48	3	989	3	NSUN7	4	40778207	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10		40778207	150376069	28	4026											
PAICS	10606	broad.mit.edu	37	chr4	57316793	57316793	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttattttctagtcttatcgGgacctcaaagaagtaactcc	6	10	3	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	PAICS	NM_001079525	exon7	c.G717T	p.R239R	TTATCGGGACCTC		56	3	0.05	81	0	0		21		761	0	0				T	57316793	G	T	57316793	2	4	58	1	0	0	0	0	0	0	0	1	11441	1219	43	3		3	PAICS	4	57316793	Silent	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	16538586	57316793	133837483	29	4027											
ALB	213	hgsc.bcm.edu;bcgsc.ca	37	chr4	74283804	74283804	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctcctgcctgttctttaGctatccgtggtcctgaacca	8	14	2	1	rs77256214	bycluster	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_000477	exon12	c.1429-1G>T	.	TCTTTAGCTATCC		87	17	0.2	107	0	0				0	0					T	74283804	G	T	74283804	5	4	58	1	0	0	0	0	0	0	1	0	483	985	34	2	1474	2	ALB	4	74283804	Splice_Site	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	16967011	74283804	116870472	30	4028											
IRX4	50805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	1879733	1879733	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacttgttccgcggcggccaCgtcatcttgttctccttctt	8	15	4	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	IRX4,colon,carcinoma,-1,1	IRX4	NM_016358	exon4	c.G621A	p.T207T	CGGCCACGTCATC		111	11	0.1	117	0	0		-1	1	61	7	0.11				T	1879733	C	T	1879733	2	4	58	1	0	0	0	0	0	0	0	1	7889	523	19	1		1	IRX4	5	1879733	Silent	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10		1879733	179035527	31	4029											
IRX1	79192	broad.mit.edu	37	chr5	3600085	3600085	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaccacccgcgggccacccCggcgcgcacgggccctccgc	12	24	0	0	rs369355630		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	IRX1	NM_024337	exon2	c.C1023T	p.P341P	CCACCCCGGCGCG		89	7	0.08	120	1	0.0083333333		106		11	0	0				T	3600085	C	T	3600085	2	4	58	1	0	0	0	0	0	0	0	1	7886	639	23	1		1	IRX1	5	3600085	Silent	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	1720352	3600085	177315175	32	4030											
CDH9	1007	broad.mit.edu	37	chr5	26881347	26881347	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttggttacaatcagctgtGagagattccaaagaactgag	10	7	2	4	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	CDH9	NM_016279	exon12	c.C2268A	p.L756L	AGCTGTGAGAGAT		139	6	0.04	136	0	0		305		0	0					T	26881347	G	T	26881347	2	4	58	1	0	0	0	0	0	0	0	1	3139	1277	45	3		3	CDH9	5	26881347	Silent	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	23281262	26881347	154033913	33	4031											
NNT	23530	broad.mit.edu	37	chr5	43613188	43613189	+	Frame_Shift_Ins	INS	-	-	G													atcactatagagtggcaggtINSgcccaaatccaaggggcaaa					rs149285174	by1000genomes	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	NNT,adrenal_gland,adrenal_cortical_adenoma,0,1	NNT	NM_012343	exon3	c.330_331insG	p.G110fs	GGCAGGTGCCCAA		134	15	0.11	151	0	0		92	1	12	0	0				G	43613189	-	G	43613188	7	5	58	1	0	1	1	0	0	0	0	0	10556	1683	59	0	336	0	NNT	5	43613188	Frame_Shift_Ins	INS	-	TCGA-2G-AAKH-01A-11D-A42Y-10	16731841	43613188	137302072	34	4032											
PCDHGA4	56111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140735836	140735836	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	catctctcaccagctcagtcCaggaatcttcttccccgggt	7	16	5	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_018917	exon1	c.C1069G	p.Q357E	TCAGTCCAGGAAT		73	12	0.16	114	0	0				2	0	0				G	140735836	C	G	140735836	3	3	58	1	0	0	0	0	1	0	0	0	11602	595	21	5	1071	5	PCDHGA4	5	140735836	Missense_Mutation	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	97122648	140735836	40179424	35	4033											
GEMIN5	25929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	154280995	154280995	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacatactgatcctgaaaaCacagctgtttggcaaaagct	8	9	0	3	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_015465	exon21	c.G2918A	p.C973Y	TGAAAACACAGCT		157	19	0.12	222	0	0				45	9	0.2				T	154280995	C	T	154280995	3	4	58	1	0	0	0	0	1	0	0	0	6372	478	17	3	1640	3	GEMIN5	5	154280995	Missense_Mutation	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	13545159	154280995	26634265	36	4034											
GCNT2	2651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	10586756	10586756	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	aactgtctgaaagaccttgtCgcctctgaggttccctggaa	10	11	2	3	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_145655	exon1	c.C534G	p.V178V	CCTTGTCGCCTCT		149	9	0.06	146	0	0				40	5	0.13				G	10586756	C	G	10586756	2	3	58	1	0	0	0	0	0	0	0	1	6340	871	31	5		5	GCNT2	6	10586756	Silent	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10		10586756	160528311	37	4035											
HIST1H2BF	8343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	26200084	26200084	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggagatccagacggccgtaCgcctgctgctgcccggggag	17	13	0	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_003522	exon1	c.C298T	p.R100C	GCCGTACGCCTGC		86	5	0.06	75	0	0				0	0					T	26200084	C	T	26200084	3	4	58	1	0	0	0	0	1	0	0	0	7185	536	19	1	300	1	HIST1H2BF	6	26200084	Missense_Mutation	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	15613328	26200084	144914983	38	4036											
MUC21	394263	mdanderson.org	37	chr6	30955233	30955233	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	accaattctgagtccagcacAacctccagtggggccaacac	8	15	1	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001010909	exon2	c.A1281G	p.T427T	CAGCACAACCTCC		98	5	0.05	63	0	0				13	0	0				G	30955233	A	G	30955233	2	3	58	1	0	0	0	0	0	0	0	1	10024	117	5	4		4	MUC21	6	30955233	Silent	SNP	A	TCGA-2G-AAKH-01A-11D-A42Y-10	4755149	30955233	140159834	39	4037											
FOXP4	116113	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	41555161	41555161	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acggccgccaccgctacctcGtttgccgctccccccaaggt	9	20	0	0	rs375722090	alternate_allele	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	FOXP4	NM_001012426	exon7	c.G783C	p.S261S	TACCTCGTTTGCC		286	10	0.03	167	1	0.005988024		83		110	11	0.1	rescued with RNA-seq			C	41555161	G	C	41555161	2	2	58	1	0	0	0	0	0	0	0	1	6062	1132	40	5		5	FOXP4	6	41555161	Silent	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	10599928	41555161	129559906	40	4038											
GPR6	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	110301311	110301311	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccatcatctatgccttccgCaaccaggagatccagcgcgc	8	17	2	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	GPR6,caecum,carcinoma,+1,1	GPR6	NM_005284	exon1	c.C996T	p.R332R	CTTCCGCAACCAG		84	8	0.1	123	1	0.0081300813		46	1	1	0	0				T	110301311	C	T	110301311	2	4	58	1	0	0	0	0	0	0	0	1	6740	697	25	2		2	GPR6	6	110301311	Silent	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	68746150	110301311	60813756	41	4039											
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	129204396	129204396	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcgcggccactacgatgccGggagccgccggggtcctcct	15	16	0	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_000426	exon1	c.G6A	p.P2P	GATGCCGGGAGCC		59	8	0.14	40	0	0				0	0					A	129204396	G	A	129204396	2	1	58	1	0	0	0	0	0	0	0	1	8644	1103	39	1		1	LAMA2	6	129204396	Silent	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	18903085	129204396	41910671	42	4040											
LAMA2	3908	mdanderson.org	37	chr6	129691055	129691055	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcacttgctgtcacctcagCgggccccagagaggcttatt	11	13	2	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001079823	exon34	c.C4879T	p.R1627W	CCTCAGCGGGCCC		34	3	0.09	70	0	0				9	0	0				T	129691055	C	T	129691055	3	4	58	1	0	0	0	0	1	0	0	0	8644	759	27	1	5013	1	LAMA2	6	129691055	Missense_Mutation	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	486659	129691055	41424012	43	4041											
HOXA3	3200	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	27150188	27150188	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tgctgattggcattataagcGaacccgttggctgcctggta	12	9	0	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_030661	exon2	c.C72A	p.F24L	ATAAGCGAACCCG		161	17	0.11	190	0	0				1	0	0				T	27150188	G	T	27150188	3	4	58	1	0	0	0	0	1	0	0	0	7333	1049	37	1	1267	1	HOXA3	7	27150188	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10		27150188	131988475	44	4042											
GLI3	2737	broad.mit.edu;mdanderson.org	37	chr7	42005961	42005961	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggcttcgctggagcggcGcgaggcgtcggtggagatgg	21	9	0	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	GLI3	NM_000168	exon15	c.C2710T	p.R904C	AGCGGCGCGAGGC		31	3	0.1	36	0	0		312		1	0	0				A	42005961	G	A	42005961	3	1	58	1	0	0	0	0	1	0	0	0	6480	1087	38	1	2036	1	GLI3	7	42005961	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	14855773	42005961	117132702	45	4043											
EGFR	1956	mdanderson.org	37	chr7	55223545	55223545	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aattatgtggtgacagatcaCggctcgtgcgtccgagcctg	13	10	1	2	rs182002674	bycluster;by1000genomes	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_201283	exon8	c.C912T	p.H304H	AGATCACGGCTCG		80	4	0.05	75	0	0	0			2	0	0				T	55223545	C	T	55223545	2	4	58	1	0	0	0	0	0	0	0	1	4993	535	19	1		1	EGFR	7	55223545	Silent	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	13217584	55223545	103915118	46	4044											
AUTS2	26053	broad.mit.edu;mdanderson.org	37	chr7	70249953	70249953	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacacccaactgggaccccTtttgggccacctcctcatca	7	18	2	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	AUTS2	NM_015570	exon16	c.T2172C	p.P724P	GACCCCTTTTGGG		128	5	0.04	121	0	0		173		46	0	0				C	70249953	T	C	70249953	2	2	58	1	0	0	0	0	0	0	0	1	1223	1596	56	4		4	AUTS2	7	70249953	Silent	SNP	T	TCGA-2G-AAKH-01A-11D-A42Y-10	15026408	70249953	88888710	47	4045											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	82455963	82455963	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaaactgtcacctccagtGttttcttcttgagctatata	5	12	3	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_014510	exon18	c.C14357T	p.T4786I	TCCAGTGTTTTCT		83	9	0.11	120	0	0				0	0					A	82455963	G	A	82455963	3	1	58	1	0	0	0	0	1	0	0	0	11629	1377	48	3	1120	3	PCLO	7	82455963	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	12206010	82455963	76682700	48	4046											
AKAP9	10142	broad.mit.edu	37	chr7	91715587	91715587	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agagcttctcagactggcgaGgtgaactactgcttgccctt	11	11	1	3	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	AKAP9	NM_005751	exon37	c.G9070T	p.G3024C	TGGCGAGGTGAAC		212	4	0.02	263	0	0		788		19	0	0				T	91715587	G	T	91715587	3	4	58	1	0	0	0	0	1	0	0	0	456	1000	35	3	9216	3	AKAP9	7	91715587	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	9259624	91715587	67423076	49	4047											
DUS4L	11062	broad.mit.edu	37	chr7	107207563	107207563	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atatgtcaggaaagaaaaaaAgatcccatagaaatgtttca	7	5	2	3	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	DUS4L	NM_001270419	exon3	c.A48G	p.K16K	AAAAAAAGATCCC		136	4	0.03	136	0	0		27		26	0	0				G	107207563	A	G	107207563	2	3	58	1	0	0	0	0	0	0	0	1	4834	69	3	4		4	DUS4L	7	107207563	Silent	SNP	A	TCGA-2G-AAKH-01A-11D-A42Y-10	15491976	107207563	51931100	50	4048											
CTTNBP2	83992	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	117368303	117368303	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacacaggatcgcagggggAgggcgcctgacctttgaact	15	11	0	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_033427	exon17	c.T3895C	p.S1299P	AGGGGGAGGGCGC		140	7	0.05	155	0	0				0	0					G	117368303	A	G	117368303	3	3	58	1	0	0	0	0	1	0	0	0	4069	304	11	4	1124	4	CTTNBP2	7	117368303	Missense_Mutation	SNP	A	TCGA-2G-AAKH-01A-11D-A42Y-10	10160740	117368303	41770360	51	4049											
C7orf49	78996	broad.mit.edu;mdanderson.org	37	chr7	134851458	134851458	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agagctggaaccccccggccTctgggaagggctgaggcctg	16	13	1	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	C7orf49	NM_024033	exon4	c.A379C	p.R127R	CCGGCCTCTGGGA		42	4	0.1	53	0	0		24		97	15	0.15				G	134851458	T	G	134851458	2	3	58	1	0	0	0	0	0	0	0	1	2414	1550	54	4		4	C7orf49	7	134851458	Silent	SNP	T	TCGA-2G-AAKH-01A-11D-A42Y-10	17483155	134851458	24287205	52	4050											
SSPO	23145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr7	149483197	149483197	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgggcagtgacggtgaatGgggtgagcgtgacgcccccc	18	12	0	4	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_198455	exon23	c.G3265T	p.G1089W	GTGAATGGGGTGA		99	14	0.14	103	0	0				0	0					T	149483197	G	T	149483197	3	4	58	1	0	0	0	0	1	0	0	0	15244	1348	47	3	3351	3	SSPO	7	149483197	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	14631739	149483197	9655466	53	4051											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	3889549	3889549	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtaccggattttgtctcctAtgttgaatctcgttccatgc	8	10	2	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_033225	exon4	c.T488C	p.I163T	TCTCCTATGTTGA		104	6	0.06	171	0	0				0	0					G	3889549	A	G	3889549	3	3	58	1	0	0	0	0	1	0	0	0	3969	449	16	4	10287	4	CSMD1	8	3889549	Missense_Mutation	SNP	A	TCGA-2G-AAKH-01A-11D-A42Y-10		3889549	142474473	54	4052											
GPR124	25960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	37689047	37689047	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aggtggagatcgtggtgctgGagacctctgcctcctactgc	14	11	1	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_032777	exon8	c.G1039A	p.E347K	GTGCTGGAGACCT		53	10	0.19	91	0	0				21	2	0.1				A	37689047	G	A	37689047	3	1	58	1	0	0	0	0	1	0	0	0	6677	1175	41	3	1048	3	GPR124	8	37689047	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	33799498	37689047	108674975	55	4053											
CYP7A1	1581	mdanderson.org	37	chr8	59409620	59409620	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gactggaggtctcatgatacGttggaggttttccatcatgc	12	8	2	1	rs201114135	alternate_allele	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	CYP7A1,colon,carcinoma,0,1	CYP7A1	NM_000780	exon3	c.C451A	p.R151S	TGATACGTTGGAG		12	2	0.17	17	0	0		0	1	0	0					T	59409620	G	T	59409620	3	4	58	1	0	0	0	0	1	0	0	0	4219	1145	40	1	1079	1	CYP7A1	8	59409620	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	21720573	59409620	86954402	56	4054											
MLLT3	4300	hgsc.bcm.edu;broad.mit.edu	37	chr9	20414311	20414319	+	In_Frame_Del	DEL	CTGCTGCTG	CTGCTGCTG	-													tgctgctactgctgctgctaCtgctgctgctgctgctgctg					rs373338988	alternate_allele	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	CTGCTGCTG	CTGCTGCTG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	MLLT3,caecum,carcinoma,0,1	MLLT3	NM_004529	exon5	c.526_534del	p.176_178del	CTGCTACTGCTGC		63	13	0.21	85	0	0		125		0	0					-	20414319	CTGCTGCTG	-	20414311	7	5	58	1	0	1	0	1	0	0	0	0	9675	565	20	0	1201	0	MLLT3	9	20414311	In_Frame_Del	DEL	CTGCTGCTG	TCGA-2G-AAKH-01A-11D-A42Y-10		20414311	120799120	57	4055											
KIF24	347240	broad.mit.edu	37	chr9	34310903	34310903	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaattcctgtttttgtatGgtactgggaatcatctggta	10	6	2	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	KIF24	NM_194313	exon2	c.C442A	p.H148N	TTGTATGGTACTG		223	4	0.02	279	0	0		64		5	0	0				T	34310903	G	T	34310903	3	4	58	1	0	0	0	0	1	0	0	0	8333	1348	47	3	3712	3	KIF24	9	34310903	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	13896592	34310903	106902528	58	4056											
ANKS6	203286	mdanderson.org	37	chr9	101498829	101498829	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggctgttgccaggggccCtggtgttgctggcactgctc	17	11	0	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_173551	exon15	c.G2588T	p.R863M	GGGGCCCTGGTGT		47	3	0.06	73	0	0				20	0	0				A	101498829	C	A	101498829	3	1	58	1	0	0	0	0	1	0	0	0	686	681	24	3	31	3	ANKS6	9	101498829	Missense_Mutation	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	67187926	101498829	39714602	59	4057											
ZBTB43	23099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	129596183	129596183	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgagcagaatacaactgaGgctaactaaaaataggatct	9	7	1	3	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001135776	exon2	c.G1395A	p.E465E	AACTGAGGCTAAC		143	58	0.41	155	0	0				13	7	0.54				A	129596183	G	A	129596183	2	1	58	1	0	0	0	0	0	0	0	1	17602	991	35	3		3	ZBTB43	9	129596183	Silent	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	28097354	129596183	11617248	60	4058											
ANKRD30A	91074	broad.mit.edu;mdanderson.org	37	chr10	37442507	37442507	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacttttaacagagtctctGtgagactgtttcacagaagg	9	7	2	3	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	ANKRD30A	NM_052997	exon13	c.G1547A	p.C516Y	GTCTCTGTGAGAC		567	18	0.03	791	1	0.0012642225		448		0	0					A	37442507	G	A	37442507	3	1	58	1	0	0	0	0	1	0	0	0	654	1377	48	3	1597	3	ANKRD30A	10	37442507	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10		37442507	98092240	61	4059											
NFKB2	4791	broad.mit.edu;mdanderson.org	37	chr10	104159438	104159438	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgcgctgctggcgggacagCgccacctgctgacggcgcag	17	15	0	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	NFKB2	NM_002502	exon14	c.C1432T	p.R478C	GGACAGCGCCACC		32	4	0.13	43	0	0		48		175	67	0.38				T	104159438	C	T	104159438	3	4	58	1	0	0	0	0	1	0	0	0	10422	768	27	1	1482	1	NFKB2	10	104159438	Missense_Mutation	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	66716931	104159438	31375309	62	4060											
TAF5	6877	broad.mit.edu	37	chr10	105145120	105145120	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcagaggacggaactgttAgattgtggagccttcaaaca	11	8	2	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	TAF5	NM_006951	exon8	c.A1702G	p.R568G	ACTGTTAGATTGT		70	3	0.04	92	0	0		47		29	0	0				G	105145120	A	G	105145120	3	3	58	1	0	0	0	0	1	0	0	0	15584	412	15	4	1732	4	TAF5	10	105145120	Missense_Mutation	SNP	A	TCGA-2G-AAKH-01A-11D-A42Y-10	985682	105145120	30389627	63	4061											
SHOC2	8036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	112724174	112724174	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagatcccaaagtaccaTcagccaaggaaagagaaaag	8	8	1	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_007373	exon2	c.T58C	p.S20P	GTACCATCAGCCA		73	27	0.37	108	0	0				37	19	0.51				C	112724174	T	C	112724174	3	2	58	1	0	0	0	0	1	0	0	0	14341	1435	50	4	60	4	SHOC2	10	112724174	Missense_Mutation	SNP	T	TCGA-2G-AAKH-01A-11D-A42Y-10	7579054	112724174	22810573	64	4062											
TACC2	10579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	123954584	123954584	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgaagaggcatttgagaCcccggagtcaacgacccctg	11	12	2	3	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_206862	exon8	c.C5864A	p.T1955N	TTGAGACCCCGGA		63	14	0.22	58	0	0				23	13	0.57				A	123954584	C	A	123954584	3	1	58	1	0	0	0	0	1	0	0	0	15558	507	18	3	5962	3	TACC2	10	123954584	Missense_Mutation	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	11230410	123954584	11580163	65	4063											
HRAS	3265	ucsc.edu	37	chr11	534295	534295	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgcccacaccgccggcgcCcaccaccaccagcttatatt	6	20	0	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	HRAS	NM_001130442	exon2	c.G28A	p.G10S	CGGCGCCCACCAC		53	3	0.06	54	0	0		1232		69	7	0.1				T	534295	C	T	534295	3	4	58	1	0	0	0	0	1	0	0	0	7388	623	22	3	624	3	HRAS	11	534295	Missense_Mutation	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10		534295	134472221	66	4064											
EFCAB4A	283229	mdanderson.org	37	chr11	830251	830251	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcgcccggtcccccgaaggCgcgagagcgagcacgagagg	17	14	0	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_173584	exon6	c.C607T	p.R203C	CGAAGGCGCGAGA		40	3	0.08	36	0	0				4	0	0				T	830251	C	T	830251	3	4	58	1	0	0	0	0	1	0	0	0	4962	782	27	1	625	1	EFCAB4A	11	830251	Missense_Mutation	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	295956	830251	134176265	67	4065											
ZDHHC5	25921	broad.mit.edu	37	chr11	57466827	57466827	+	Frame_Shift_Del	DEL	A	A	-													atcgatgtcttacagcagccAaaaagcccaacctggtgtct					novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	ZDHHC5,NS,carcinoma,0,1	ZDHHC5	NM_015457	exon11	c.1919delA	p.Q640fs	GCAGCCAAAAAGC		115	7	0.06	118	0	0		49	1	409	0	0				-	57466827	A	-	57466827	7	5	58	1	0	1	0	1	0	0	0	0	17675	130	5	0	1957	0	ZDHHC5	11	57466827	Frame_Shift_Del	DEL	A	TCGA-2G-AAKH-01A-11D-A42Y-10	56636576	57466827	77539689	68	4066											
CNTF	1270	broad.mit.edu	37	chr11	58391741	58391741	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atacccttcttctccaagtcGctgcctttgcataccagata	5	14	2	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	CNTF	NM_000614	exon2	c.G349A	p.A117T	CAAGTCGCTGCCT		167	5	0.03	178	0	0		22		0	0					A	58391741	G	A	58391741	3	1	58	1	0	0	0	0	1	0	0	0	3660	1087	38	1	355	1	CNTF	11	58391741	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	924914	58391741	76614775	69	4067											
LTBP3	4054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	65310634	65310634	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcaaagacatctgtaggaGccattggtattgatgcagtc	13	7	1	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001130144	exon18	c.C2538T	p.G846G	GTAGGAGCCATTG		126	8	0.06	106	0	0				33	2	0.06				A	65310634	G	A	65310634	2	1	58	1	0	0	0	0	0	0	0	1	9119	958	34	2		2	LTBP3	11	65310634	Silent	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	6918893	65310634	69695882	70	4068											
APOA1	335	hgsc.bcm.edu	37	chr11	116708059	116708059	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctaggttaggggacacctAcccgtcaggaagagcacggc	13	13	1	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	APOA1,NS,carcinoma,-2,1	APOA1	NM_000039	exon3	c.43+2T>G	.	ACACCTACCCGTC		137	14	0.1	121	1	0.0082644628		-2	1	0	0					C	116708059	A	C	116708059	5	2	58	1	0	0	0	0	0	0	1	0	777	405	14	4	770	4	APOA1	11	116708059	Splice_Site	SNP	A	TCGA-2G-AAKH-01A-11D-A42Y-10	51397425	116708059	18298457	71	4069											
TIRAP	114609	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	126162546	126162546	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtgacagtggcagtagtcGctggagcaaagactatgacg	15	7	0	3	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	TIRAP_ENST00000392678,NS,carcinoma,+1,3	TIRAP	NM_148910	exon5	c.G242A	p.R81H	GTAGTCGCTGGAG		66	6	0.09	87	0	0		37	3	4	1	0.25				A	126162546	G	A	126162546	3	1	58	1	0	0	0	0	1	0	0	0	15986	1087	38	1	248	1	TIRAP	11	126162546	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	9454487	126162546	8843970	72	4070											
KLRC4	8302	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	10562068	10562068	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	attctacttggaatatttccTgtttggttcctgaaatggag	9	6	1	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	KLRC4,NS,carcinoma,-1,1	KLRC4	NM_013431	exon1	c.A107C	p.Q36P	ATTTCCTGTTTGG		538	17	0.03	246	0	0		23	1	1	0	0				G	10562068	T	G	10562068	3	3	58	1	0	0	0	0	1	0	0	0	8460	1580	55	4	385	4	KLRC4	12	10562068	Missense_Mutation	SNP	T	TCGA-2G-AAKH-01A-11D-A42Y-10		10562068	123289827	73	4071											
DDX11	1663	ucsc.edu	37	chr12	31254052	31254052	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcacgttccagaaaagagaGctgcctcagatggtcagtcc	10	11	3	3	rs201027785	by1000genomes	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	DDX11	NM_030653	exon20	c.G2040C	p.E680D	AAGAGAGCTGCCT		121	1	0.01	88	0	0		188		167	22	0.13				C	31254052	G	C	31254052	3	2	58	1	0	0	0	0	1	0	0	0	4366	962	34	5	2114	5	DDX11	12	31254052	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	20691984	31254052	102597843	74	4072											
TXNRD1	7296	hgsc.bcm.edu;broad.mit.edu	37	chr12	104709560	104709560	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaatgttgttgtaggtctcGgaggaacatgtgtgaatgtg	14	4	2	1	rs370602169		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	.	.	.	.	GGTCTCGGAGGAA		95	4	0.04	140	0	0				242	18	0.07				A	104709560	G	A	104709560	3	1	58	1	0	0	0	0	1	0	0	0	16868	1117	39	1	656	1	TXNRD1	12	104709560	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	73455508	104709560	29142335	75	4073											
CUX2	23316	mdanderson.org	37	chr12	111779749	111779749	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaggagaaggaggcactgcGgaaggcctatcagctggaac	16	9	1	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_015267	exon21	c.G3551T	p.R1184L	CACTGCGGAAGGC		124	5	0.04	164	0	0				6	0	0				T	111779749	G	T	111779749	3	4	58	1	0	0	0	0	1	0	0	0	4088	1116	39	1	3633	1	CUX2	12	111779749	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	7070189	111779749	22072146	76	4074											
SH2B3	10019	hgsc.bcm.edu	37	chr12	111886037	111886037	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaatcgagcccgggactcGgactacgaaatggactcatc	12	11	1	1	rs369151728	alternate_allele	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	SH2B3,rectum,carcinoma,0,1	SH2B3	NM_005475	exon8	c.G1659T	p.S553S	GGACTCGGACTAC		71	3	0.04	112	0	0		0	1	60	0	0				T	111886037	G	T	111886037	2	4	58	1	0	0	0	0	0	0	0	1	14282	1103	39	1		1	SH2B3	12	111886037	Silent	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	106288	111886037	21965858	77	4075											
TMEM132D	121256	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	130184360	130184360	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggaaacgacttacctcaaCgtgaagcgatcttcagtgga	11	9	3	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	TMEM132D	NM_133448	exon2	c.G963A	p.T321T	CCTCAACGTGAAG		197	18	0.09	234	1	0.0042735043		299		1	1	1				T	130184360	C	T	130184360	2	4	58	1	0	0	0	0	0	0	0	1	16106	523	19	1		1	TMEM132D	12	130184360	Silent	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	18298323	130184360	3667535	78	4076											
GPC6	10082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	94680124	94680124	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tggcaaatcaggctgacctcGacacagagtggaatctgttt	11	9	2	2	rs201329039	by1000genomes;alternate_allele	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_005708	exon4	c.G853C	p.D285H	GACCTCGACACAG		70	8	0.11	98	0	0				2	0	0				C	94680124	G	C	94680124	3	2	58	1	0	0	0	0	1	0	0	0	6641	1058	37	5	867	5	GPC6	13	94680124	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10		94680124	20489754	79	4077											
SETD3	84193	hgsc.bcm.edu;broad.mit.edu	37	chr14	99879294	99879294	+	Frame_Shift_Del	DEL	G	G	-													gaagaggtcgttaccaggccGttggtgtggttacacatatc					novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	SETD3	NM_199123	exon8	c.844delG	p.G282fs	CAGGCCGTTGGTG		154	15	0.1	150	0	0		56		90	1	0.01				-	99879294	G	-	99879294	7	5	58	1	0	1	0	1	0	0	0	0	14185	1136	40	0	1011	0	SETD3	14	99879294	Frame_Shift_Del	DEL	G	TCGA-2G-AAKH-01A-11D-A42Y-10		99879294	7470246	80	4078											
AMN	81693	mdanderson.org	37	chr14	103389038	103389038	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcgagatgggcgtcctgGgccgggtcctgctgtggctg	20	10	0	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_030943	exon1	c.G13T	p.G5C	GTCCTGGGCCGGG		23	3	0.13	37	0	0				1	0	0				T	103389038	G	T	103389038	3	4	58	1	0	0	0	0	1	0	0	0	576	1232	43	3	15	3	AMN	14	103389038	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	3509744	103389038	3960502	81	4079											
MAPK6	5597	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	52353621	52353621	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	atgagccaatttcaagccatCcttttcatattgaagatgaa	6	8	2	4	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	MAPK6	NM_002748	exon5	c.C991T	p.P331S	AGCCATCCTTTTC		176	47	0.27	230	1	0.0043478261		70		56	28	0.5				T	52353621	C	T	52353621	3	4	58	1	0	0	0	0	1	0	0	0	9330	855	30	3	1005	3	MAPK6	15	52353621	Missense_Mutation	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10		52353621	50177771	82	4080											
DENND4A	10260	mdanderson.org	37	chr15	66021978	66021978	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagtgtcacagcattttcaGggcctaaattctgcagtagt	10	8	3	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_005848	exon10	c.C1205A	p.P402H	TTTTCAGGGCCTA		35	3	0.09	62	0	0				4	0	0				T	66021978	G	T	66021978	3	4	58	1	0	0	0	0	1	0	0	0	4461	1000	35	3	4611	3	DENND4A	15	66021978	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	13668357	66021978	36509414	83	4081											
SMAD6	4091	broad.mit.edu;mdanderson.org	37	chr15	67073787	67073787	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcgtccgcatcagcttcGccaagggctgggggccctgc	14	15	1	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	SMAD6	NM_005585	exon4	c.G1405T	p.A469S	AGCTTCGCCAAGG		28	3	0.11	27	0	0		14		30	0	0				T	67073787	G	T	67073787	3	4	58	1	0	0	0	0	1	0	0	0	14815	1087	38	1	1457	1	SMAD6	15	67073787	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	1051809	67073787	35457605	84	4082											
HCN4	10021	ucsc.edu	37	chr15	73617654	73617654	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcacctcccgcaggggctcGcttagctcgcccaggatgct	11	17	1	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	HCN4	NM_005477	exon5	c.C1722T	p.S574S	GGGCTCGCTTAGC		58	4	0.07	87	0	0		150		1	0	0				A	73617654	G	A	73617654	2	1	58	1	0	0	0	0	0	0	0	1	7039	1078	38	1		1	HCN4	15	73617654	Silent	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	6543867	73617654	28913738	85	4083											
STRA6	64220	broad.mit.edu	37	chr15	74476264	74476264	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aatatggcttggcgggagggAtggggactccgatgcaaggg	19	6	0	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	STRA6	NM_001199042	exon14	c.T1350C	p.H450H	GGAGGGATGGGGA		89	14	0.16	97	13	0.1340206186		66		12	0	0				G	74476264	A	G	74476264	2	3	58	1	0	0	0	0	0	0	0	1	15377	330	12	4		4	STRA6	15	74476264	Silent	SNP	A	TCGA-2G-AAKH-01A-11D-A42Y-10	858610	74476264	28055128	86	4084											
TARSL2	123283	mdanderson.org	37	chr15	102264363	102264363	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctggcggctccgctcctcGgcgaggcacagccgcaggct	15	17	0	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_152334	exon1	c.C228A	p.A76A	CTCCTCGGCGAGG		11	2	0.18	13	0	0				4	0	0				T	102264363	G	T	102264363	2	4	58	1	0	0	0	0	0	0	0	1	15617	1103	39	1		1	TARSL2	15	102264363	Silent	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	27788099	102264363	267029	87	4085											
RHBDF1	64285	mdanderson.org	37	chr16	110496	110496	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcccgcaagctctggggcGctgggatggatgggccactt	17	11	1	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_022450	exon12	c.C1599A	p.S533R	TGGGGCGCTGGGA		14	2	0.14	14	0	0				64	0	0				T	110496	G	T	110496	3	4	58	1	0	0	0	0	1	0	0	0	13368	1078	38	1	996	1	RHBDF1	16	110496	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10		110496	90244257	88	4086											
TELO2	9894	mdanderson.org	37	chr16	1559886	1559886	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acgctggcactgagggccctGctgcttctgcagagactcaa	12	13	2	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_016111	exon21	c.G2463A	p.L821L	GGCCCTGCTGCTT		46	3	0.07	62	0	0				156	0	0				A	1559886	G	A	1559886	2	1	58	1	0	0	0	0	0	0	0	1	15815	1306	46	2		2	TELO2	16	1559886	Silent	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	1449390	1559886	88794867	89	4087											
CLN3	1201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	28488916	28488916	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccccagtgtgtcagagatgCaggtggccgccattgcaaac	12	12	1	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001042432	exon16	c.G1238A	p.C413Y	GAGATGCAGGTGG		79	5	0.06	113	0	0				260	42	0.16				T	28488916	C	T	28488916	3	4	58	1	0	0	0	0	1	0	0	0	3566	710	25	2	82	2	CLN3	16	28488916	Missense_Mutation	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	26929030	28488916	61865837	90	4088											
RABEP2	79874	broad.mit.edu	37	chr16	28935747	28935747	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaggatggcctgcagcgagGccacctcctcttggcactgc	12	15	2	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	RABEP2	NM_024816	exon2	c.C251T	p.A84V	AGCGAGGCCACCT		69	3	0.04	60	0	0		48		22	0	0				A	28935747	G	A	28935747	3	1	58	1	0	0	0	0	1	0	0	0	13013	1203	42	2	1506	2	RABEP2	16	28935747	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	446831	28935747	61419006	91	4089											
ZNF319	57567	mdanderson.org	37	chr16	58031252	58031252	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctccccacttggcgtgcaCgggtgctgcagcagctccga	13	16	0	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_020807	exon2	c.G918A	p.P306P	CGTGCACGGGTGC		26	3	0.12	43	0	0				4	0	0				T	58031252	C	T	58031252	2	4	58	1	0	0	0	0	0	0	0	1	17893	523	19	1		1	ZNF319	16	58031252	Silent	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	29095505	58031252	32323501	92	4090											
RLTPR	146206	mdanderson.org	37	chr16	67681206	67681206	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gccctctgcttctcagagccTtgaggtctcagaacagattc	9	13	3	4	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001013838	exon10	c.T692A	p.L231H	AGAGCCTTGAGGT		86	4	0.05	138	0	0				5	0	0				A	67681206	T	A	67681206	3	1	58	1	0	0	0	0	1	0	0	0	13445	1609	56	5	730	5	RLTPR	16	67681206	Missense_Mutation	SNP	T	TCGA-2G-AAKH-01A-11D-A42Y-10	9649954	67681206	22673547	93	4091											
CIRH1A	84916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	69177275	69177275	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcgctaatgctgacgtgcagTccattgctgtagctgacgtg	12	10	0	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_032830	exon6	c.T721A	p.S241T	GTGCAGTCCATTG		95	10	0.11	135	0	0				164	39	0.24				A	69177275	T	A	69177275	3	1	58	1	0	0	0	0	1	0	0	0	3456	1667	58	5	739	5	CIRH1A	16	69177275	Missense_Mutation	SNP	T	TCGA-2G-AAKH-01A-11D-A42Y-10	1496069	69177275	21177478	94	4092											
BCAR1	9564	mdanderson.org	37	chr16	75276786	75276786	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagggccggggccaggccctGctggcttcttatcatacatg	14	12	2	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001170714	exon3	c.C353T	p.A118V	GGCCCTGCTGGCT		25	3	0.12	26	0	0				27	0	0				A	75276786	G	A	75276786	3	1	58	1	0	0	0	0	1	0	0	0	1346	1319	46	2	2482	2	BCAR1	16	75276786	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	6099511	75276786	15077967	95	4093											
ZC3H18	124245	mdanderson.org	37	chr16	88664702	88664702	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaatggtgccccgcctctcGgacctcacccgctgatgccc	9	19	2	1	rs372349936	alternate_allele	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_144604	exon4	c.G805T	p.G269X	CCTCTCGGACCTC		44	3	0.07	69	0	0				70	0	0				T	88664702	G	T	88664702	4	4	58	1	0	0	0	0	0	1	0	0	17626	1117	39	1	815	1	ZC3H18	16	88664702	Nonsense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	13387916	88664702	1690051	96	4094											
PIK3R5	23533	mdanderson.org	37	chr17	8808189	8808189	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaccggtggtaggtgctgGctgccttcagaaggagatcc	16	9	1	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001142633	exon5	c.C317T	p.A106V	GTGCTGGCTGCCT		37	3	0.08	50	0	0				13	0	0				A	8808189	G	A	8808189	3	1	58	1	0	0	0	0	1	0	0	0	11969	1203	42	2	2385	2	PIK3R5	17	8808189	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10		8808189	72387021	97	4095											
FBXW10	10517	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr17	18681824	18681824	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agcacaaaaacaaggacaatTggaaactcctggaaaactgc	8	9	0	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	FBXW10	NM_001267585	exon14	c.T2372A	p.L791X	GACAATTGGAAAC		313	28	0.09	426	0	0		82		0	0					A	18681824	T	A	18681824	4	1	58	1	0	0	0	0	0	1	0	0	5795	1821	63	5	2423	5	FBXW10	17	18681824	Nonsense_Mutation	SNP	T	TCGA-2G-AAKH-01A-11D-A42Y-10	9873635	18681824	62513386	98	4096											
SLC5A10	125206	mdanderson.org	37	chr17	18880197	18880197	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agcgatcactgtcagcccggGacctgaaccatgccaaggcg	12	14	2	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001270649	exon9	c.G877T	p.D293Y	GCCCGGGACCTGA		36	3	0.08	40	0	0				2	0	0				T	18880197	G	T	18880197	3	4	58	1	0	0	0	0	1	0	0	0	14716	1174	41	3	911	3	SLC5A10	17	18880197	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	198373	18880197	62315013	99	4097											
NOS2	4843	bcgsc.ca	37	chr17	26125770	26125770	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccacattgttgttgatgtcTttttccccattcattgcata	5	10	2	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	NOS2	NM_000625	exon2	c.A66G	p.K22K	GATGTCTTTTTCC		165	6	0.04	188	0	0		113		0	0					C	26125770	T	C	26125770	2	2	58	1	0	0	0	0	0	0	0	1	10589	1606	56	4		4	NOS2	17	26125770	Silent	SNP	T	TCGA-2G-AAKH-01A-11D-A42Y-10	7245573	26125770	55069440	100	4098											
ZNF407	55628	mdanderson.org	37	chr18	72775889	72775889	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agccatggcctctcaggagcGggcacaggtggccttcaaga	14	12	2	1	rs201021175	by1000genomes;alternate_allele	TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_017757	exon8	c.G6212T	p.R2071L	AGGAGCGGGCACA		38	3	0.08	63	0	0				11	0	0				T	72775889	G	T	72775889	3	4	58	1	0	0	0	0	1	0	0	0	17943	1116	39	1	6372	1	ZNF407	18	72775889	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10		72775889	5301359	101	4099											
DENND1C	79958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	6476886	6476886	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acggtgctgagtttgctggcGgtgagcaggactcttctctc	14	10	2	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_024898	exon10	c.C660A	p.T220T	GCTGGCGGTGAGC		50	6	0.12	60	0	0				11	0	0				T	6476886	G	T	6476886	2	4	58	1	0	0	0	0	0	0	0	1	4456	1103	39	1		1	DENND1C	19	6476886	Silent	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10		6476886	52652097	102	4100											
MCOLN1	57192	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	7593728	7593728	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtttgtggggttcatgtggCggcagcggggacgggtcatc	19	7	2	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_020533	exon9	c.C1006T	p.R336W	ATGTGGCGGCAGC		225	10	0.04	181	0	0				111	10	0.09				T	7593728	C	T	7593728	3	4	58	1	0	0	0	0	1	0	0	0	9444	759	27	1	1040	1	MCOLN1	19	7593728	Missense_Mutation	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	1116842	7593728	51535255	103	4101											
ZNF559	84527	broad.mit.edu	37	chr19	9452580	9452580	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaacttcctaactgtaatcaAtgtgaaacagccttcagcca	6	11	2	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	ZNF559	NM_001202406	exon6	c.A645G	p.Q215Q	TAATCAATGTGAA		98	3	0.03	140	0	0		77		67	1	0.01				G	9452580	A	G	9452580	2	3	58	1	0	0	0	0	0	0	0	1	18046	98	4	4		4	ZNF559	19	9452580	Silent	SNP	A	TCGA-2G-AAKH-01A-11D-A42Y-10	1858852	9452580	49676403	104	4102											
HOOK2	29911	mdanderson.org	37	chr19	12878672	12878672	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagctgggcgcagcgcaGctcctcattggcctcccgca	12	17	1	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001100176	exon13	c.C1261A	p.L421M	AGCGCAGCTCCTC		35	3	0.09	37	0	0				23	0	0				T	12878672	G	T	12878672	3	4	58	1	0	0	0	0	1	0	0	0	7323	962	34	2	942	2	HOOK2	19	12878672	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	3426092	12878672	46250311	105	4103											
ZNF506	440515	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	19906184	19906184	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	attctatacatttaaaagatTtttttccagtatctcttatc	2	7	2	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001099269	exon4	c.A512C	p.K171T	AAAGATTTTTTTC		146	10	0.07	174	0	0				23	7	0.3				G	19906184	T	G	19906184	3	3	58	1	0	0	0	0	1	0	0	0	18008	1841	64	4	826	4	ZNF506	19	19906184	Missense_Mutation	SNP	T	TCGA-2G-AAKH-01A-11D-A42Y-10	7027512	19906184	39222799	106	4104											
CAPNS1	826	broad.mit.edu	37	chr19	36632054	36632054	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcggcggcggcggcggCggtggtggaggcggcggtgg	28	9	0	0	rs17879825		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	CAPNS1	NM_001749	exon2	c.C141T	p.G47G	CGGCGGCGGTGGT		79	7	0.09	123	1	0.0081300813		19		2	0	0				T	36632054	C	T	36632054	2	4	58	1	0	0	0	0	0	0	0	1	2651	755	27	1		1	CAPNS1	19	36632054	Silent	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	16725870	36632054	22496929	107	4105											
CCDC8	83987	mdanderson.org	37	chr19	46915880	46915880	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggctggggcgggtgcgggGtgctcttctccatgatgcgg	21	9	2	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	CCDC8,NS,carcinoma,+1,1	CCDC8	NM_032040	exon1	c.C188A	p.T63N	TGCGGGGTGCTCT		28	3	0.11	31	0	0		1	1	20	0	0				T	46915880	G	T	46915880	3	4	58	1	0	0	0	0	1	0	0	0	2873	1261	44	3	1432	3	CCDC8	19	46915880	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	10283826	46915880	12213103	108	4106											
ZNF614	80110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	52519423	52519423	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagggagtctttcctgtatgAcatctctcatgttgtatgag	10	7	3	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_025040	exon5	c.T1428C	p.C476C	TGTATGACATCTC		76	8	0.11	101	0	0				32	10	0.31				G	52519423	A	G	52519423	2	3	58	1	0	0	0	0	0	0	0	1	18095	273	10	4		4	ZNF614	19	52519423	Silent	SNP	A	TCGA-2G-AAKH-01A-11D-A42Y-10	5603543	52519423	6609560	109	4107											
NLRP12	91662	bcgsc.ca	37	chr19	54313068	54313068	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctggatctcgtacaagcaGctgaagaactccaaggagcc	10	12	1	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	NLRP12	NM_144687	exon3	c.C1845A	p.Y615X	CAAGCAGCTGAAG		117	6	0.05	144	1	0.0069444444		236		138	0	0				T	54313068	G	T	54313068	3	4	58	1	0	0	0	0	1	0	0	0	10520	962	34	2	1468	2	NLRP12	19	54313068	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	1793645	54313068	4815915	110	4108											
KIR2DL1	3802	mdanderson.org	37	chr19	55285080	55285080	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gaccctctggacatcgtgatCataggtgagagtgtccagac	12	10	2	3	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_014218	exon3	c.C366A	p.I122I	CGTGATCATAGGT		31	3	0.1	31	0	0				0	0					A	55285080	C	A	55285080	2	1	58	1	0	0	0	0	0	0	0	1	8358	816	29	3		3	KIR2DL1	19	55285080	Silent	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	972012	55285080	3843903	111	4109											
KIR3DL1	3811	broad.mit.edu;mdanderson.org	37	chr19	55329817	55329817	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggcccagcgctgtggtgCctcgaggaggacacgtgact	15	13	0	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	KIR3DL1	NM_013289	exon3	c.C118T	p.P40S	GTGGTGCCTCGAG		38	3	0.08	51	0	0		174		1	0	0				T	55329817	C	T	55329817	3	4	58	1	0	0	0	0	1	0	0	0	8362	739	26	2	128	2	KIR3DL1	19	55329817	Missense_Mutation	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10	44737	55329817	3799166	112	4110											
TMEM86B	255043	mdanderson.org	37	chr19	55739752	55739752	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgggaatccagaggcagaaGtacacgcagcaggagaggat	15	8	0	3	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_173804	exon2	c.C105A	p.Y35X	GCAGAAGTACACG		35	3	0.09	56	0	0				8	0	0				T	55739752	G	T	55739752	4	4	58	1	0	0	0	0	0	1	0	0	16268	1024	36	3	583	3	TMEM86B	19	55739752	Nonsense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	409935	55739752	3389231	113	4111											
NAT14	57106	bcgsc.ca	37	chr19	55997853	55997853	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgctcctcctggcggcgGccagcagcggcctgcgcttt	13	18	0	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	NAT14	NM_020378	exon3	c.G151A	p.A51T	GCGGCGGCCAGCA		17	4	0.24	20	0	0		11		37	0	0				A	55997853	G	A	55997853	3	1	58	1	0	0	0	0	1	0	0	0	10222	1203	42	2	157	2	NAT14	19	55997853	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	258101	55997853	3131130	114	4112											
ESF1	51575	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr20	13753234	13753234	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aacttgctcttccttcatccTctcctttccaaattctgaag	3	14	4	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	ESF1	NM_001276380	exon5	c.A1177G	p.R393G	TCATCCTCTCCTT		95	6	0.06	133	0	0		77		79	0	0				C	13753234	T	C	13753234	3	2	58	1	0	0	0	0	1	0	0	0	5279	1550	54	4	1418	4	ESF1	20	13753234	Missense_Mutation	SNP	T	TCGA-2G-AAKH-01A-11D-A42Y-10		13753234	49272286	115	4113											
SLC19A1	6573	broad.mit.edu;ucsc.edu	37	chr21	46945796	46945796	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaagtgatgatggtcttgaCgatggtggcaaagaacgtgt	15	4	1	4	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	SLC19A1	NM_001205206	exon5	c.G1228A	p.V410I	TCTTGACGATGGT		56	5	0.09	71	0	0		53		29	7	0.24				T	46945796	C	T	46945796	3	4	58	1	0	0	0	0	1	0	0	0	14482	536	19	1	555	1	SLC19A1	21	46945796	Missense_Mutation	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10		46945796	1184099	116	4114											
DNAJB7	150353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	41257722	41257722	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctttaaaaacatcatctgGcttatggaatgtgaagccgt	8	7	3	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_145174	exon1	c.C277A	p.P93T	CATCTGGCTTATG		159	16	0.1	163	0	0				15	1	0.07				T	41257722	G	T	41257722	3	4	58	1	0	0	0	0	1	0	0	0	4652	1203	42	2	656	2	DNAJB7	22	41257722	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10		41257722	10046844	117	4115											
ARSF	416	broad.mit.edu	37	chrX	3019220	3019220	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggcatttggaagctaggCgagggcatgcccaacttggt	16	8	0	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	ARSF	NM_004042	exon8	c.C1060T	p.R354X	GCTAGGCGAGGGC		488	5	0.01	297	0	0		97		0	0					T	3019220	C	T	3019220	4	4	58	1	0	0	0	0	0	1	0	0	990	760	27	1	1086	1	ARSF	23	3019220	Nonsense_Mutation	SNP	C	TCGA-2G-AAKH-01A-11D-A42Y-10		3019220	152251340	118	4116											
SCML2	10389	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	18276363	18276374	+	In_Frame_Del	DEL	ACAGACTTGAGA	ACAGACTTGAGA	-													ccatgtttgtttacatagacAcagacttgagaaaaaatgcg					novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	ACAGACTTGAGA	ACAGACTTGAGA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	SCML2	NM_006089	exon10	c.1070_1075del	p.357_359del	ATAGACACAGACT		243	22	0.09	169	0	0		81		36	0	0				-	18276374	ACAGACTTGAGA	-	18276363	7	5	58	1	0	1	0	1	0	0	0	0	13963	157	6	0	1052	0	SCML2	23	18276363	In_Frame_Del	DEL	ACAGACTTGAGA	TCGA-2G-AAKH-01A-11D-A42Y-10	15257143	18276363	136994197	119	4117											
MAGEB4	4115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	30261215	30261215	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctggagcccggcccagagtTgcagccaggcgtggcactac	15	14	0	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_002367	exon1	c.T963C	p.V321V	CAGAGTTGCAGCC		107	14	0.13	84	0	0				0	0					C	30261215	T	C	30261215	2	2	58	1	0	0	0	0	0	0	0	1	9227	1799	63	4		4	MAGEB4	23	30261215	Silent	SNP	T	TCGA-2G-AAKH-01A-11D-A42Y-10	11984852	30261215	125009345	120	4118											
NR0B1	190	broad.mit.edu;mdanderson.org	37	chrX	30326687	30326687	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agtacttgacgaagcgcagcGtcttcaacaggcccgctgag	12	12	2	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	NR0B1	NM_000475	exon1	c.C794G	p.T265R	CGCAGCGTCTTCA		44	3	0.07	24	0	0		61		4	0	0				C	30326687	G	C	30326687	3	2	58	1	0	0	0	0	1	0	0	0	10660	1145	40	5	626	5	NR0B1	23	30326687	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	65472	30326687	124943873	121	4119											
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu	37	chrX	53574783	53574785	+	In_Frame_Del	DEL	GTG	GTG	-													tgggcgtggtggaggcggcaGtggtggtggtggtagatgtg					novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	GTG	GTG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	HUWE1	NM_031407	exon68	c.10486_10488del	p.3496_3496del	GCGGCAGTGGTGG		162	11	0.07	95	0	0		724		502	0	0				-	53574785	GTG	-	53574783	7	5	58	1	0	1	0	1	0	0	0	0	7504	1029	36	0	2705	0	HUWE1	23	53574783	In_Frame_Del	DEL	GTG	TCGA-2G-AAKH-01A-11D-A42Y-10	23248096	53574783	101695777	122	4120											
PHKA1	5255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	71829496	71829496	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agagatagtcttttctcgagGttctggaggaagtcctactg	12	7	3	1	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_002637	exon23	c.C2584A	p.P862T	CTCGAGGTTCTGG		159	42	0.26	121	0	0				111	51	0.46				T	71829496	G	T	71829496	3	4	58	1	0	0	0	0	1	0	0	0	11890	1261	44	3	1127	3	PHKA1	23	71829496	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	18254713	71829496	83441064	123	4121											
ATRX	546	broad.mit.edu	37	chrX	76855029	76855029	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agctactatcttttttccccTttttcccttttttcttcttt	1	12	3	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	ATRX	NM_000489	exon25	c.A5807G	p.K1936R	TTCCCCTTTTTCC		385	5	0.01	302	0	0		833		22	0	0				C	76855029	T	C	76855029	3	2	58	1	0	0	0	0	1	0	0	0	1206	1609	56	4	1715	4	ATRX	23	76855029	Missense_Mutation	SNP	T	TCGA-2G-AAKH-01A-11D-A42Y-10	5025533	76855029	78415531	124	4122											
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	109695094	109695094	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caatgtccacaccgctaatgGgagccccagcctctggaaat	9	14	1	0	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_020769	exon3	c.G1249A	p.G417R	CTAATGGGAGCCC		76	9	0.12	44	0	0				0	0					A	109695094	G	A	109695094	3	1	58	1	0	0	0	0	1	0	0	0	13325	1233	43	3	1251	3	RGAG1	23	109695094	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	32840065	109695094	45575466	125	4123											
XIAP	331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	123040895	123040895	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaagctttgcaaaatctGtatggatagaaatattgcta	10	4	1	2	novel		TCGA-2G-AAKH-01A-11D-A42Y-10	TCGA-2G-AAKH-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4181974f-50f6-46f2-80af-81cef983c7df	539c8e99-0cf7-4e55-a88a-d21072e30885	.	.	NM_001204401	exon7	c.G1358T	p.C453F	AAATCTGTATGGA		202	35	0.17	155	0	0				25	6	0.24				T	123040895	G	T	123040895	3	4	58	1	0	0	0	0	1	0	0	0	17487	1377	48	3	1380	3	XIAP	23	123040895	Missense_Mutation	SNP	G	TCGA-2G-AAKH-01A-11D-A42Y-10	13345801	123040895	32229665	126	4124											
AJAP1	55966	mdanderson.org	37	chr1	4772463	4772463	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagccggcccaccacagagaCtgagttcatcgcctgggggc	13	15	1	2	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_018836	exon2	c.C533T	p.T178I	CAGAGACTGAGTT		44	3	0.07	53	0	0				4	0	0				T	4772463	C	T	4772463	3	4	59	1	0	0	0	0	1	0	0	0	435	565	20	3	539	3	AJAP1	1	4772463	Missense_Mutation	SNP	C	TCGA-2G-AAKL-01A-11D-A42Y-10		4772463	244478158	1	4125											
GRHL3	57822	broad.mit.edu	37	chr1	24666205	24666205	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagcacattgaggaggtgGcctataatgcactgtccttt	12	8	0	1	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	GRHL3,NS,carcinoma,-2,1	GRHL3	NM_021180	exon8	c.G1015T	p.A339S	GAGGTGGCCTATA		117	4	0.03	125	0	0		69	1	0	0					T	24666205	G	T	24666205	3	4	59	1	0	0	0	0	1	0	0	0	6805	1203	42	2	1066	2	GRHL3	1	24666205	Missense_Mutation	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10	19893742	24666205	224584416	2	4126											
TMEM57	55219	broad.mit.edu	37	chr1	25812258	25812258	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tagaagaagccactgctgccCgggctgttgcgtttgctgct	13	11	0	2	rs142677711		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	TMEM57,colon,carcinoma,-1,1	TMEM57	NM_018202	exon8	c.C1468T	p.R490W	GCTGCCCGGGCTG		85	3	0.04	92	0	0		72	1	63	0	0				T	25812258	C	T	25812258	3	4	59	1	0	0	0	0	1	0	0	0	16243	643	23	1	1498	1	TMEM57	1	25812258	Missense_Mutation	SNP	C	TCGA-2G-AAKL-01A-11D-A42Y-10	1146053	25812258	223438363	3	4127											
UBXN11	91544	bcgsc.ca	37	chr1	26608904	26608904	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgggaccgggacagggaccAggactgaatttcaggctgga	16	10	1	1	rs201519763	by1000genomes	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	UBXN11	NM_183008	exon16	c.T1449C	p.P483P	GGGACCAGGACTG		43	5	0.12	41	0	0		54		26	0	0				G	26608904	A	G	26608904	2	3	59	1	0	0	0	0	0	0	0	1	16972	175	7	4		4	UBXN11	1	26608904	Silent	SNP	A	TCGA-2G-AAKL-01A-11D-A42Y-10	796646	26608904	222641717	4	4128											
BAI2	576	broad.mit.edu	37	chr1	32203076	32203076	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaggatcaggatgttggatGccaagatggacaggcagaag	16	6	1	2	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	BAI2	NM_001703	exon20	c.C2933A	p.A978E	TTGGATGCCAAGA		199	6	0.03	264	0	0		128		3	0	0				T	32203076	G	T	32203076	3	4	59	1	0	0	0	0	1	0	0	0	1297	1319	46	2	1880	2	BAI2	1	32203076	Missense_Mutation	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10	5594172	32203076	217047545	5	4129											
IGSF3	3321	ucsc.edu	37	chr1	117142613	117142613	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tggaggtcctctccgccagtCgcgtccaggtgttgttgtag	14	11	1	0	rs76151115	bycluster;byfrequency	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	IGSF3	NM_001542	exon8	c.G2039A	p.R680Q	GCCAGTCGCGTCC		60	10	0.17	62	6	0.0967741935		294		59	0	0				T	117142613	C	T	117142613	3	4	59	1	0	0	0	0	1	0	0	0	7644	884	31	1	1625	1	IGSF3	1	117142613	Missense_Mutation	SNP	C	TCGA-2G-AAKL-01A-11D-A42Y-10	84939537	117142613	132108008	6	4130											
C1orf116	79098	broad.mit.edu	37	chr1	207196070	207196070	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctctagagcttctttacGtgcttttctctgctcttgca	6	12	4	1	rs200569642	alternate_allele	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	C1orf116	NM_023938	exon4	c.C1039A	p.R347S	CTTTACGTGCTTT		72	3	0.04	103	0	0		64		0	0					T	207196070	G	T	207196070	3	4	59	1	0	0	0	0	1	0	0	0	2002	1145	40	1	770	1	C1orf116	1	207196070	Missense_Mutation	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10	90053457	207196070	42054551	7	4131											
MYCN	4613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	16085979	16085979	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagtgagcgtcgcagaaaCcacaacatcctggagcgcca	11	13	0	2	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_005378	exon3	c.C1155A	p.N385K	CAGAAACCACAAC		126	31	0.25	125	0	0				662	204	0.31				A	16085979	C	A	16085979	3	1	59	1	0	0	0	0	1	0	0	0	10068	506	18	3	1161	3	MYCN	2	16085979	Missense_Mutation	SNP	C	TCGA-2G-AAKL-01A-11D-A42Y-10		16085979	227113394	8	4132											
SPRED2	200734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	65571938	65571938	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaccttacagaccccgacgCgactgatcccgcctccttcc	7	19	0	3	rs201064965		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	SPRED2,NS,carcinoma,+1,1	SPRED2	NM_181784	exon2	c.G119A	p.R40H	CCGACGCGACTGA		151	8	0.05	127	0	0		1	1	203	17	0.08				T	65571938	C	T	65571938	3	4	59	1	0	0	0	0	1	0	0	0	15148	768	27	1	1157	1	SPRED2	2	65571938	Missense_Mutation	SNP	C	TCGA-2G-AAKL-01A-11D-A42Y-10	49485959	65571938	177627435	9	4133											
DBI	1622	mdanderson.org	37	chr2	120129857	120129857	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccatgaaagcttacatcaAcaaagtagaagagctaaaga	8	7	1	4	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001178017	exon4	c.A410G	p.N137S	ACATCAACAAAGT		51	3	0.06	37	0	0				707	0	0				G	120129857	A	G	120129857	3	3	59	1	0	0	0	0	1	0	0	0	4275	43	2	4	547	4	DBI	2	120129857	Missense_Mutation	SNP	A	TCGA-2G-AAKL-01A-11D-A42Y-10	54557919	120129857	123069516	10	4134											
DLX2	1746	broad.mit.edu	37	chr2	172967030	172967030	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcgcgtagggcgagcccccGccgccgccgccgcccgccgg	16	21	0	0	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	DLX2	NM_004405	exon1	c.C237G	p.G79G	GCCCCCGCCGCCG		108	13	0.12	98	12	0.1224489796		29		1	0	0				C	172967030	G	C	172967030	2	2	59	1	0	0	0	0	0	0	0	1	4599	1074	38	5		5	DLX2	2	172967030	Silent	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10	52837173	172967030	70232343	11	4135											
IHH	3549	mdanderson.org	37	chr2	219925070	219925070	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcggcacgagtttgcgtggCggtcgccggcggctgcccac	17	14	0	0	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_002181	exon1	c.G120A	p.P40P	GCGTGGCGGTCGC		48	3	0.06	55	0	0				2	0	0				T	219925070	C	T	219925070	2	4	59	1	0	0	0	0	0	0	0	1	7650	755	27	1		1	IHH	2	219925070	Silent	SNP	C	TCGA-2G-AAKL-01A-11D-A42Y-10	46958040	219925070	23274303	12	4136											
NAT6	24142	mdanderson.org	37	chr3	50334945	50334945	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cttggctgggccagggctcaGagtcagctcttgcctatgca	13	12	3	1	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_012191	exon2	c.C16A	p.L6M	GGCTCAGAGTCAG		44	3	0.07	73	0	0				30	0	0				T	50334945	G	T	50334945	3	4	59	1	0	0	0	0	1	0	0	0	10225	933	33	3	914	3	NAT6	3	50334945	Missense_Mutation	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10		50334945	147687485	13	4137											
CHST2	9435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	142839860	142839860	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctatgcactgctgctggtgCtcactatgctcaacctcctg	9	14	2	0	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_004267	exon2	c.C202T	p.L68F	CTGGTGCTCACTA		95	16	0.17	76	0	0				11	2	0.18				T	142839860	C	T	142839860	3	4	59	1	0	0	0	0	1	0	0	0	3426	797	28	2	204	2	CHST2	3	142839860	Missense_Mutation	SNP	C	TCGA-2G-AAKL-01A-11D-A42Y-10	92504915	142839860	55182570	14	4138											
LRBA	987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	151829586	151829586	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaattgaatgcattgcacTttggatggaatgtgttaaaa	9	5	0	1	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_006726	exon11	c.A1393C	p.S465R	TTGCACTTTGGAT		219	73	0.33	245	0	0				5	3	0.6				G	151829586	T	G	151829586	3	3	59	1	0	0	0	0	1	0	0	0	8975	1609	56	4	7390	4	LRBA	4	151829586	Missense_Mutation	SNP	T	TCGA-2G-AAKL-01A-11D-A42Y-10		151829586	39324690	15	4139											
PCDHB4	0	broad.mit.edu	37	chr5	140502496	140502496	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatactgttgaaaaaaaaaTtggatttcgaaaaaattaaa	5	2	0	1	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	PCDHB4,colon,carcinoma,-1,2	PCDHB4	NM_018938	exon1	c.T916A	p.L306M	AAAAAATTGGATT		103	4	0.04	125	0	0		177	2	0	0					A	140502496	T	A	140502496	3	1	59	1	0	0	0	0	1	0	0	0	11590	1490	52	5	918	5	PCDHB4	5	140502496	Missense_Mutation	SNP	T	TCGA-2G-AAKL-01A-11D-A42Y-10		140502496	40412764	16	4140											
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	32023843	32023843	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tggtccaggagaggctcagcGagtcaggggaggatcctgtc	17	9	2	1	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_019105	exon24	c.C8252T	p.S2751L	CTCAGCGAGTCAG		77	19	0.25	67	0	0				5	3	0.6				A	32023843	G	A	32023843	3	1	59	1	0	0	0	0	1	0	0	0	16405	1059	37	1	6545	1	TNXB	6	32023843	Missense_Mutation	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10		32023843	139091224	17	4141											
FNDC1	84624	mdanderson.org	37	chr6	159653813	159653813	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccagccaccaactccaatGcgccatcacggtccaccatg	6	20	1	0	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	FNDC1,NS,carcinoma,-2,1	FNDC1	NM_032532	exon11	c.G2269T	p.A757S	TCCAATGCGCCAT		62	4	0.06	87	0	0		-2	1	8	0	0				T	159653813	G	T	159653813	3	4	59	1	0	0	0	0	1	0	0	0	6000	1319	46	2	2311	2	FNDC1	6	159653813	Missense_Mutation	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10	127629970	159653813	11461254	18	4142											
SCIN	85477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	12644158	12644158	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaaatttatcagtggtgtgGttcctcgtgcaacaaatatg	11	6	1	0	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001112706	exon4	c.G536C	p.G179A	GGTGTGGTTCCTC		138	22	0.16	97	0	0				0	0					C	12644158	G	C	12644158	3	2	59	1	0	0	0	0	1	0	0	0	13958	1261	44	5	550	5	SCIN	7	12644158	Missense_Mutation	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10		12644158	146494505	19	4143											
YKT6	10652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	44240804	44240804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgctgctcaaagccgcatacGatgtgtcttccttcagcttt	8	12	3	0	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_006555	exon1	c.G70A	p.D24N	GCATACGATGTGT		230	54	0.23	167	0	0				186	48	0.26				A	44240804	G	A	44240804	3	1	59	1	0	0	0	0	1	0	0	0	17544	1058	37	1	72	1	YKT6	7	44240804	Missense_Mutation	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10	31596646	44240804	114897859	20	4144											
OR2A2	442361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	143806941	143806941	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aaacctaatgaaccagaaaaGaaccatctcctttgttccat	4	11	1	3	rs139387901	alternate_allele	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	OR2A2,upper_arm,malignant_melanoma,0,1	OR2A2	NM_001005480	exon1	c.G266C	p.R89T	AGAAAAGAACCAT		245	42	0.17	226	0	0		0	1	0	0					C	143806941	G	C	143806941	3	2	59	1	0	0	0	0	1	0	0	0	11024	942	33	5	268	5	OR2A2	7	143806941	Missense_Mutation	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10	99566137	143806941	15331722	21	4145											
CSMD1	64478	broad.mit.edu	37	chr8	3015436	3015436	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taccaatgcacaggggagacGgatagttccaacggcgaacg	13	10	0	1	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	CSMD1_ENST00000537824,NS,carcinoma,0,2	CSMD1	NM_033225	exon39	c.C5897A	p.P1966Q	GGAGACGGATAGT		315	5	0.02	329	0	0		1469	2	1	0	0				T	3015436	G	T	3015436	3	4	59	1	0	0	0	0	1	0	0	0	3969	1116	39	1	4925	1	CSMD1	8	3015436	Missense_Mutation	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10		3015436	143348586	22	4146											
RP1L1	94137	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	10464479	10464479	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggggcgagacttccgagtgCctggtcctcttgtaggtcat	15	10	2	1	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	RP1L1	NM_178857	exon4	c.G7129A	p.A2377T	CGAGTGCCTGGTC		79	13	0.16	94	1	0.0106382979		453		0	0					T	10464479	C	T	10464479	3	4	59	1	0	0	0	0	1	0	0	0	13584	739	26	2	77	2	RP1L1	8	10464479	Missense_Mutation	SNP	C	TCGA-2G-AAKL-01A-11D-A42Y-10	7449043	10464479	135899543	23	4147											
STC1	6781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	23702390	23702398	+	In_Frame_Del	DEL	TGTTGAAGT	TGTTGAAGT	-													cggctcattggtgcgtctccTgttgaagtcagctcgtgggt					novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	TGTTGAAGT	TGTTGAAGT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	STC1	NM_003155	exon4	c.630_638del	p.210_213del	GTCTCCTGTTGAA		183	0	0	230	0	0		49		11	0	0				-	23702398	TGTTGAAGT	-	23702390	7	5	59	1	0	1	0	1	0	0	0	0	15330	1579	55	0	110	0	STC1	8	23702390	In_Frame_Del	DEL	TGTTGAAGT	TCGA-2G-AAKL-01A-11D-A42Y-10	13237911	23702390	122661632	24	4148			1	9		2	2	12	N	TGTTGAAGT_GCTCGT	2.274115e-05
STC1	6781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	23702401	23702406	+	In_Frame_Del	DEL	GCTCGT	GCTCGT	-													tgcgtctcctgttgaagtcaGctcgtgggtgtgtttgggca					novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	GCTCGT	GCTCGT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	STC1	NM_003155	exon4	c.622_627del	p.208_209del	AAGTCAGCTCGTG		182	21	0.12	228	0	0		49		12	0	0				-	23702406	GCTCGT	-	23702401	7	5	59	1	0	1	0	1	0	0	0	0	15330	971	34	0	121	0	STC1	8	23702401	In_Frame_Del	DEL	GCTCGT	TCGA-2G-AAKL-01A-11D-A42Y-10	11	23702401	122661621	25	4149			1	9		2	2	12	N	TGTTGAAGT_GCTCGT	2.274115e-05
VPS13B	157680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	100479794	100479794	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgctacgggacctgatacaCgacattcatttgttgtctgt	9	9	2	1	rs140353201	alternate_allele	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_152564	exon24	c.C3598G	p.R1200G	GATACACGACATT		190	29	0.15	168	0	0				3	1	0.33				G	100479794	C	G	100479794	3	3	59	1	0	0	0	0	1	0	0	0	17249	528	19	5	3811	5	VPS13B	8	100479794	Missense_Mutation	SNP	C	TCGA-2G-AAKL-01A-11D-A42Y-10	76777393	100479794	45884228	26	4150											
KIAA2026	158358	mdanderson.org	37	chr9	6007725	6007725	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgtcctctccttcggccgcCggtggcggccgctcttcctc	11	19	2	0	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001017969	exon1	c.G63A	p.P21P	GGCCGCCGGTGGC		58	3	0.05	50	0	0				2	0	0				T	6007725	C	T	6007725	2	4	59	1	0	0	0	0	0	0	0	1	8311	639	23	1		1	KIAA2026	9	6007725	Silent	SNP	C	TCGA-2G-AAKL-01A-11D-A42Y-10		6007725	135205706	27	4151											
PRSS3	5646	hgsc.bcm.edu	37	chr9	33797828	33797828	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcctgccctgcccatcagcCgcatccaggtgagactggga	12	15	1	1	rs143209949	bycluster;byfrequency	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	PRSS3_ENST00000361005,NS,carcinoma,-1,2	PRSS3_ENST00000361005	NM_007343	exon3	c.C373T	p.R125C	ATCAGCCGCATCC		103	6	0.06	121	1	0.0082644628	0.001	-1	2	0	0					T	33797828	C	T	33797828	3	4	59	1	0	0	0	0	1	0	0	0	12670	666	23	1	427	1	PRSS3	9	33797828	Missense_Mutation	SNP	C	TCGA-2G-AAKL-01A-11D-A42Y-10	27790103	33797828	107415603	28	4152											
RECK	8434	bcgsc.ca	37	chr9	36037093	36037093	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcctggctccgggcagtgCgggtgagtaacctccagagc	17	12	0	2	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	RECK	NM_021111	exon1	c.C98T	p.A33V	GCAGTGCGGGTGA		22	4	0.18	24	0	0		73		18	0	0				T	36037093	C	T	36037093	3	4	59	1	0	0	0	0	1	0	0	0	13251	768	27	1	100	1	RECK	9	36037093	Missense_Mutation	SNP	C	TCGA-2G-AAKL-01A-11D-A42Y-10	2239265	36037093	105176338	29	4153											
TOR1B	27348	mdanderson.org	37	chr9	132565665	132565665	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcttcgccgagtgctgccgCgaggagcggccgctcaacgc	15	16	1	0	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_014506	exon1	c.C174T	p.R58R	CTGCCGCGAGGAG		20	3	0.15	25	0	0				20	0	0				T	132565665	C	T	132565665	2	4	59	1	0	0	0	0	0	0	0	1	16434	755	27	1		1	TOR1B	9	132565665	Silent	SNP	C	TCGA-2G-AAKL-01A-11D-A42Y-10	96528572	132565665	8647766	30	4154											
ABL1	25	mdanderson.org	37	chr9	133759942	133759942	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgtccacatttggagggcaCaaaagtgagaagccggctct	12	10	1	1	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_007313	exon11	c.C2322T	p.H774H	AGGGCACAAAAGT		39	3	0.08	72	0	0				35	0	0				T	133759942	C	T	133759942	2	4	59	1	0	0	0	0	0	0	0	1	92	477	17	3		3	ABL1	9	133759942	Silent	SNP	C	TCGA-2G-AAKL-01A-11D-A42Y-10	1194277	133759942	7453489	31	4155											
KIAA1984	84960	mdanderson.org	37	chr9	139700593	139700593	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	acctggagctgcagatggagGactgtgaggagtggcgggtg	20	6	0	2	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001039374	exon10	c.G1012T	p.D338Y	ATGGAGGACTGTG		42	3	0.07	52	0	0				2	0	0				T	139700593	G	T	139700593	3	4	59	1	0	0	0	0	1	0	0	0	8307	1174	41	3	1050	3	KIAA1984	9	139700593	Missense_Mutation	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10	5940651	139700593	1512838	32	4156											
ARID5B	84159	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	63700112	63700118	+	Frame_Shift_Del	DEL	AACCCTA	AACCCTA	-													ctgctgaagtacaggcagtcAaccctaaacagtggactcaa					novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	AACCCTA	AACCCTA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	ARID5B	NM_032199	exon3	c.446_452del	p.149_151del	GCAGTCAACCCTA		83	36	0.43	141	0	0		125		2	0	0				-	63700118	AACCCTA	-	63700112	7	5	59	1	0	1	0	1	0	0	0	0	919	117	5	0	457	0	ARID5B	10	63700112	Frame_Shift_Del	DEL	AACCCTA	TCGA-2G-AAKL-01A-11D-A42Y-10		63700112	71834635	33	4157											
NRAP	4892	mdanderson.org	37	chr10	115423606	115423606	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttctcggcaggataaacCccatacccacacctagaaca	5	15	2	1	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001261463	exon1	c.G36T	p.G12G	ATAAACCCCATAC		49	3	0.06	73	0	0				0	0					A	115423606	C	A	115423606	2	1	59	1	0	0	0	0	0	0	0	1	10685	610	22	3		3	NRAP	10	115423606	Silent	SNP	C	TCGA-2G-AAKL-01A-11D-A42Y-10	51723494	115423606	20111141	34	4158											
WDR11	55717	broad.mit.edu	37	chr10	122643308	122643308	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaggcagtatttggcagtcGtattcagagataaacccctg	10	8	1	1	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	WDR11	NM_018117	exon14	c.G1756T	p.V586L	GCAGTCGTATTCA		95	3	0.03	131	0	0		95		41	0	0				T	122643308	G	T	122643308	3	4	59	1	0	0	0	0	1	0	0	0	17332	1145	40	1	1810	1	WDR11	10	122643308	Missense_Mutation	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10	7219702	122643308	12891439	35	4159											
FANK1	92565	mdanderson.org	37	chr10	127585221	127585221	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagccgaccatggagcccCagagtaagggaggcccgggc	16	13	0	1	rs202109621		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_145235	exon1	c.C10T	p.Q4X	GAGCCCCAGAGTA		17	5	0.29	16	0	0				4	0	0				T	127585221	C	T	127585221	4	4	59	1	0	0	0	0	0	1	0	0	5704	595	21	3	12	3	FANK1	10	127585221	Nonsense_Mutation	SNP	C	TCGA-2G-AAKL-01A-11D-A42Y-10	4941913	127585221	7949526	36	4160											
CKAP4	10970	mdanderson.org	37	chr12	106633037	106633037	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccaggaagtcctgaggaGgcagacgggcggcctgggct	18	10	0	2	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_006825	exon2	c.C1574A	p.P525H	TGAGGAGGCAGAC		52	3	0.06	46	0	0				188	0	0				T	106633037	G	T	106633037	3	4	59	1	0	0	0	0	1	0	0	0	3467	1000	35	3	238	3	CKAP4	12	106633037	Missense_Mutation	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10		106633037	27218858	37	4161											
KNTC1	9735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	123057483	123057483	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	actttaacacttttgttttaGaaagattatcagaacacaga	5	6	1	4	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_014708	exon25	c.2020-1G>A	.	GTTTTAGAAAGAT		85	26	0.31	81	0	0				2	0	0				A	123057483	G	A	123057483	5	1	59	1	0	0	0	0	0	0	1	0	8470	956	33	3	2113	3	KNTC1	12	123057483	Splice_Site	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10	16424446	123057483	10794412	38	4162											
MIPEP	4285	broad.mit.edu	37	chr13	24436484	24436484	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttcatccctcgtatcatcTcaaaatctttcagagttcta	3	11	6	1	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	MIPEP	NM_005932	exon9	c.A1010G	p.E337G	ATCATCTCAAAAT		426	5	0.01	510	0	0		53		27	0	0				C	24436484	T	C	24436484	3	2	59	1	0	0	0	0	1	0	0	0	9639	1551	54	4	1175	4	MIPEP	13	24436484	Missense_Mutation	SNP	T	TCGA-2G-AAKL-01A-11D-A42Y-10		24436484	90733394	39	4163											
CSPG4	1464	mdanderson.org	37	chr15	75968620	75968620	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaggaggcggaagcgcggCacactgcctgtgcggttggc	17	12	0	0	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001897	exon10	c.G6240A	p.V2080V	GCGCGGCACACTG		12	2	0.17	30	0	0				3	0	0				T	75968620	C	T	75968620	2	4	59	1	0	0	0	0	0	0	0	1	3985	697	25	2		2	CSPG4	15	75968620	Silent	SNP	C	TCGA-2G-AAKL-01A-11D-A42Y-10		75968620	26562772	40	4164											
CHRNB4	1143	mdanderson.org	37	chr15	78922241	78922241	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggacgctgccgttggaccGgactatcaagttggtgtaga	14	9	1	1	rs141876090	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_000750	exon5	c.C406A	p.R136R	TGGACCGGACTAT		21	2	0.1	28	0	0				16	0	0				T	78922241	G	T	78922241	2	4	59	1	0	0	0	0	0	0	0	1	3415	1115	39	1		1	CHRNB4	15	78922241	Silent	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10	2953621	78922241	23609151	41	4165											
ZNF785	146540	broad.mit.edu	37	chr16	30594036	30594036	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatccaccgatgggcttccaGggcggtcttgcgcttgaagc	14	12	1	1	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	ZNF785	NM_152458	exon3	c.C1063A	p.L355M	CTTCCAGGGCGGT		44	3	0.07	53	0	0		30		8	0	0				T	30594036	G	T	30594036	3	4	59	1	0	0	0	0	1	0	0	0	18205	991	35	3	158	3	ZNF785	16	30594036	Missense_Mutation	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10		30594036	59760717	42	4166											
TMEM231	79583	mdanderson.org	37	chr16	75590079	75590079	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcggtaactgcgctcgaccGggtgagagaagagctcatag	15	10	1	3	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001077416	exon1	c.C91A	p.R31R	TCGACCGGGTGAG		16	2	0.13	25	1	0.04				4	0	0				T	75590079	G	T	75590079	2	4	59	1	0	0	0	0	0	0	0	1	16208	1116	39	1		1	TMEM231	16	75590079	Silent	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10	44996043	75590079	14764674	43	4167											
RAI1	10743	mdanderson.org	37	chr17	17697105	17697105	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agctatgaccagcagcagcaGcagcagcagcagcagcagca	12	13	0	1	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_030665	exon3	c.G843A	p.Q281Q	GCAGCAGCAGCAG		78	4	0.05	90	2	0.0222222222				0	0					A	17697105	G	A	17697105	2	1	59	1	0	0	0	0	0	0	0	1	13058	962	34	2		2	RAI1	17	17697105	Silent	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10		17697105	63498105	44	4168											
TJP3	27134	mdanderson.org	37	chr19	3746030	3746030	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgtgtccaggaccgacaGcccctccaagatcatcaaac	8	15	2	1	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001267561	exon16	c.G1988T	p.S663I	CCGACAGCCCCTC		77	4	0.05	103	0	0				43	0	0				T	3746030	G	T	3746030	3	4	59	1	0	0	0	0	1	0	0	0	15990	971	34	2	2118	2	TJP3	19	3746030	Missense_Mutation	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10		3746030	55382953	45	4169											
ADAMTS10	81794	mdanderson.org	37	chr19	8665878	8665878	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgataggccaccatcatcttGtcagccaccaccagggtctc	8	15	4	1	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_030957	exon6	c.C744T	p.D248D	CATCTTGTCAGCC		67	4	0.06	64	0	0				0	0					A	8665878	G	A	8665878	2	1	59	1	0	0	0	0	0	0	0	1	255	1368	48	3		3	ADAMTS10	19	8665878	Silent	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10	4919848	8665878	50463105	46	4170											
ILVBL	10994	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	15230298	15230298	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatcagaggcctcttggccCggctcaggatctccacacag	10	16	4	1	rs149721143		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_006844	exon8	c.G845A	p.R282Q	TTGGCCCGGCTCA		209	11	0.05	237	0	0	0			70	2	0.03				T	15230298	C	T	15230298	3	4	59	1	0	0	0	0	1	0	0	0	7758	652	23	1	1089	1	ILVBL	19	15230298	Missense_Mutation	SNP	C	TCGA-2G-AAKL-01A-11D-A42Y-10	6564420	15230298	43898685	47	4171											
HSH2D	84941	broad.mit.edu	37	chr19	16268133	16268133	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccccccaaaatcccctctTggagagacccgccagaaact	7	17	1	2	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	HSH2D	NM_032855	exon8	c.T588G	p.L196L	CCCTCTTGGAGAG		104	6	0.06	137	7	0.0510948905		16		10	0	0				G	16268133	T	G	16268133	2	3	59	1	0	0	0	0	0	0	0	1	7442	1799	63	4		4	HSH2D	19	16268133	Silent	SNP	T	TCGA-2G-AAKL-01A-11D-A42Y-10	1037835	16268133	42860850	48	4172											
ZNF676	163223	ucsc.edu	37	chr19	22363172	22363172	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgccacattcttcacatttGtagggtttctctccagcatg	7	11	3	0	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	ZNF676	NM_001001411	exon3	c.C1347T	p.Y449Y	ACATTTGTAGGGT		62	5	0.08	78	5	0.0641025641		146		58	9	0.16				A	22363172	G	A	22363172	2	1	59	1	0	0	0	0	0	0	0	1	18139	1372	48	3		3	ZNF676	19	22363172	Silent	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10	6095039	22363172	36765811	49	4173											
RHPN2	85415	mdanderson.org	37	chr19	33517507	33517507	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagctcagctccagccgcaCttgctcccgcacctttgagt	9	16	1	1	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	RHPN2,face,carcinoma,0,2	RHPN2	NM_033103	exon3	c.G217A	p.V73M	GCCGCACTTGCTC		21	2	0.1	29	0	0		0	2	34	0	0				T	33517507	C	T	33517507	3	4	59	1	0	0	0	0	1	0	0	0	13400	565	20	3	1895	3	RHPN2	19	33517507	Missense_Mutation	SNP	C	TCGA-2G-AAKL-01A-11D-A42Y-10	11154335	33517507	25611476	50	4174											
CIC	23152	broad.mit.edu	37	chr19	42795827	42795828	+	Frame_Shift_Ins	INS	-	-	C													gtgcggggtggaggggccggINSccagccactgccactggtga					rs374527943		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	CIC	NM_015125	exon11	c.2816_2817insC	p.G939fs	GGGCCGGCCAGCC		87	10	0.11	123	0	0		249		28	0	0				C	42795828	-	C	42795827	7	5	59	1	0	1	1	0	0	0	0	0	3446	1203	42	0	2858	0	CIC	19	42795827	Frame_Shift_Ins	INS	-	TCGA-2G-AAKL-01A-11D-A42Y-10	9278320	42795827	16333156	51	4175											
MARK4	57787	broad.mit.edu	37	chr19	45801078	45801078	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgggaccggcgggcagggggTgggggtggtgggggtgtgca	27	6	0	0	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	MARK4_ENST00000262891,NS,carcinoma,+2,2	MARK4	NM_001199867	exon15	c.T1743G	p.G581G	AGGGGGTGGGGGT		28	7	0.25	40	7	0.175		132	2	3	2	0.67				G	45801078	T	G	45801078	2	3	59	1	0	0	0	0	0	0	0	1	9364	1683	59	4		4	MARK4	19	45801078	Silent	SNP	T	TCGA-2G-AAKL-01A-11D-A42Y-10	3005251	45801078	13327905	52	4176											
KCNJ14	3770	broad.mit.edu	37	chr19	48967637	48967637	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggtggtcattctcgaggGgatggttgaggccacagcca	16	9	2	1	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	KCNJ14	NM_013348	exon3	c.C914T	p.P305L	TCGAGGGGATGGT		94	4	0.04	122	0	0		28		2	0	0				T	48967637	G	T	48967637	3	4	59	1	0	0	0	0	1	0	0	0	8091	1232	43	3	920	3	KCNJ14	19	48967637	Missense_Mutation	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10	3166559	48967637	10161346	53	4177											
PLEKHA4	57664	mdanderson.org	37	chr19	49362295	49362295	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgtgaggtcgggcagggGgtgctgtgtctcctgagggg	23	6	1	2	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001161354	exon8	c.C794A	p.P265H	GCAGGGGGTGCTG		36	3	0.08	33	2	0.0606060606				11	0	0				T	49362295	G	T	49362295	3	4	59	1	0	0	0	0	1	0	0	0	12105	1232	43	3	1597	3	PLEKHA4	19	49362295	Missense_Mutation	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10	394658	49362295	9766688	54	4178											
KCNC3	3748	mdanderson.org	37	chr19	50831677	50831677	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcgtcgtccaggcctccGtcgtgggcgcctgcggcgtt	15	16	0	0	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_004977	exon1	c.C663A	p.D221E	GCCTCCGTCGTGG		10	2	0.2	13	0	0				0	0					T	50831677	G	T	50831677	3	4	59	1	0	0	0	0	1	0	0	0	8059	1136	40	1	1626	1	KCNC3	19	50831677	Missense_Mutation	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10	1469382	50831677	8297306	55	4179											
ZNF274	10782	mdanderson.org	37	chr19	58723675	58723675	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accttgcagggtggggtccaGgaagtccaagacacagtgtt	14	9	0	1	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	.	.	.	.	GGTCCAGGAAGTC		48	3	0.06	59	0	0				30	0	0				T	58723675	G	T	58723675	3	4	59	1	0	0	0	0	1	0	0	0	17866	991	35	3	1153	3	ZNF274	19	58723675	Missense_Mutation	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10	7891998	58723675	405308	56	4180											
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	40033237	40033237	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaatgaaaaaagttctaaTtggtgtcgttgttggagtct	10	3	2	1	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_032221	exon37	c.A8144G	p.N2715S	TTCTAATTGGTGT		154	37	0.24	139	0	0				19	4	0.21				C	40033237	T	C	40033237	3	2	59	1	0	0	0	0	1	0	0	0	3351	1493	52	4	7	4	CHD6	20	40033237	Missense_Mutation	SNP	T	TCGA-2G-AAKL-01A-11D-A42Y-10		40033237	22992283	57	4181											
ADNP	23394	broad.mit.edu	37	chr20	49508788	49508788	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgttaaaccccagcaacacGccaggcttgtacttttcaca	6	13	1	0	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	ADNP	NM_015339	exon5	c.C2463T	p.G821G	CAACACGCCAGGC		248	4	0.02	194	0	0		106		122	0	0				A	49508788	G	A	49508788	2	1	59	1	0	0	0	0	0	0	0	1	322	1074	38	1		1	ADNP	20	49508788	Silent	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10	9475551	49508788	13516732	58	4182											
KCNG1	3755	bcgsc.ca	37	chr20	49621194	49621194	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatgtagtagggcaggatGgccaccaggtcgatcagcgt	16	8	1	1	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	KCNG1	NM_002237	exon3	c.C924A	p.A308A	CAGGATGGCCACC		80	5	0.06	74	0	0		86		9	0	0				T	49621194	G	T	49621194	2	4	59	1	0	0	0	0	0	0	0	1	8070	1335	47	3		3	KCNG1	20	49621194	Silent	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10	112406	49621194	13404326	59	4183											
ZNRF3	84133	mdanderson.org	37	chr22	29446448	29446448	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagctcccagggcttgtacgGccttcaccccgaccatttgc	9	16	1	0	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001206998	exon8	c.G2279A	p.G760D	TGTACGGCCTTCA		41	3	0.07	37	0	0				101	0	0				A	29446448	G	A	29446448	3	1	59	1	0	0	0	0	1	0	0	0	18254	1203	42	2	2005	2	ZNRF3	22	29446448	Missense_Mutation	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10		29446448	21858118	60	4184											
PLA2G6	8398	mdanderson.org	37	chr22	38528898	38528898	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggcatccgcgttggccccGtgggtcagcagcactatggc	15	14	1	0	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001004426	exon7	c.C1017A	p.H339Q	GGCCCCGTGGGTC		39	3	0.08	59	0	0				15	0	0				T	38528898	G	T	38528898	3	4	59	1	0	0	0	0	1	0	0	0	12055	1136	40	1	1447	1	PLA2G6	22	38528898	Missense_Mutation	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10	9082450	38528898	12775668	61	4185											
TCF20	6942	bcgsc.ca;mdanderson.org	37	chr22	42606966	42606966	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtaactgtttctgcatgtGtctctgtcttcactttgtca	7	10	5	0	novel		TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	TCF20	NM_181492	exon1	c.C4346A	p.T1449K	GCATGTGTCTCTG		71	5	0.07	90	1	0.0111111111		164		33	0	0				T	42606966	G	T	42606966	3	4	59	1	0	0	0	0	1	0	0	0	15749	1377	48	3	1574	3	TCF20	22	42606966	Missense_Mutation	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10	4078068	42606966	8697600	62	4186											
FAM104B	90736	mdanderson.org	37	chrX	55172630	55172630	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atacccctcatgcaagaactGgggaaagtttgcatcgggtt	11	9	1	1	rs113263757	bycluster	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001166700	exon3	c.C238T	p.Q80X	AGAACTGGGGAAA		32	4	0.13	35	0	0				58	0	0				A	55172630	G	A	55172630	4	1	59	1	0	0	0	0	0	1	0	0	5417	1357	47	3	217	3	FAM104B	23	55172630	Nonsense_Mutation	SNP	G	TCGA-2G-AAKL-01A-11D-A42Y-10		55172630	100097930	63	4187			2	10		2	2	16	N	G_C	3.101053e-05
FAM104B	90736	mdanderson.org	37	chrX	55172645	55172645	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gaactggggaaagtttgcatCgggttcagtaacaatctggt	13	6	2	0	rs1047042	bycluster;byfrequency;alternate_allele	TCGA-2G-AAKL-01A-11D-A42Y-10	TCGA-2G-AAKL-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	613a20f3-ec26-4a16-95ef-e8781f91b5ff	f69d3441-7b55-4b9a-9d83-cf6a8f2c656d	.	.	NM_001166700	exon3	c.G223C	p.D75H	TTGCATCGGGTTC		33	4	0.12	36	0	0				65	0	0				G	55172645	C	G	55172645	3	3	59	1	0	0	0	0	1	0	0	0	5417	884	31	5	232	5	FAM104B	23	55172645	Missense_Mutation	SNP	C	TCGA-2G-AAKL-01A-11D-A42Y-10	15	55172645	100097915	64	4188			2	10		2	2	16	N	G_C	3.101053e-05
TAS1R3	83756	mdanderson.org	37	chr1	1269178	1269178	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggccagcccagccctgcCcgatgcctggcccagcagcc	11	21	0	0	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_152228	exon6	c.C1893T	p.A631A	CCCTGCCCGATGC		41	3	0.07	39	0	0				1	0	0				T	1269178	C	T	1269178	2	4	60	1	0	0	0	0	0	0	0	1	15620	610	22	3		3	TAS1R3	1	1269178	Silent	SNP	C	TCGA-2G-AAKM-01A-11D-A42Y-10		1269178	247981443	1	4189											
PRDM16	63976	mdanderson.org	37	chr1	3329295	3329295	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgccccaggtgtgcccggCgcggatgccccagcagcccc	14	19	0	0	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	PRDM16,colon,carcinoma,0,1	PRDM16	NM_022114	exon9	c.C2534T	p.A845V	GCCCGGCGCGGAT		37	3	0.08	30	0	0		0	1	1	0	0				T	3329295	C	T	3329295	3	4	60	1	0	0	0	0	1	0	0	0	12508	768	27	1	2568	1	PRDM16	1	3329295	Missense_Mutation	SNP	C	TCGA-2G-AAKM-01A-11D-A42Y-10	2060117	3329295	245921326	2	4190											
TP73	7161	mdanderson.org	37	chr1	3649534	3649534	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caccatccccaaccgcggcgGcccaggcggcggccctgacg	13	20	0	1	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_005427	exon14	c.G1802T	p.G601V	GCGGCGGCCCAGG		32	3	0.09	24	0	0				1	0	0				T	3649534	G	T	3649534	3	4	60	1	0	0	0	0	1	0	0	0	16453	1203	42	2	1895	2	TP73	1	3649534	Missense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10	320239	3649534	245601087	3	4191											
CCDC18	0	broad.mit.edu	37	chr1	93744310	93744310	+	RNA	DEL	T	T	-													agtacattgaggaatgcaaaTttttttttttttttaatgaa					novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	CCDC18	.	.	.	.	TGCAAATTTTTTT		8	3	0.38	5	0	0		93		2	0	0				-	93744310	T	-	93744310	6	5	60	0	1	1	0	1	0	0	0	0	2813	1508	52	0		0	CCDC18	1	93744310	RNA	DEL	T	TCGA-2G-AAKM-01A-11D-A42Y-10	90094776	93744310	155506311	4	4192											
NRBP1	29959	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr2	27664455	27664455	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagaatatccccgagttggCggctgagctggtgcagctgg	16	9	0	2	rs374507004		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_013392	exon17	c.C1469T	p.A490V	AGTTGGCGGCTGA		118	5	0.04	76	0	0				715	0	0				T	27664455	C	T	27664455	3	4	60	1	0	0	0	0	1	0	0	0	10689	768	27	1	1531	1	NRBP1	2	27664455	Missense_Mutation	SNP	C	TCGA-2G-AAKM-01A-11D-A42Y-10		27664455	215534918	5	4193											
PRPF40A	55660	broad.mit.edu	37	chr2	153573929	153573929	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtcgggctcagactgctccGccggcggccactgccgctac	13	18	1	1	rs371312661	alternate_allele	TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	PRPF40A	NM_017892	exon1	c.C25T	p.R9W	TGCTCCGCCGGCG		176	4	0.02	165	0	0		149		43	0	0				A	153573929	G	A	153573929	3	1	60	1	0	0	0	0	1	0	0	0	12622	1086	38	1	2871	1	PRPF40A	2	153573929	Missense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10	125909474	153573929	89625444	6	4194											
IFT122	55764	mdanderson.org	37	chr3	129239031	129239031	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tcccttagatgttccattctGaggactatgagttgctggtg	11	8	1	3	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_052985	exon31	c.G3802T	p.E1268X	CATTCTGAGGACT		50	3	0.06	40	0	0				58	0	0				T	129239031	G	T	129239031	4	4	60	1	0	0	0	0	0	1	0	0	7598	1291	45	3	3927	3	IFT122	3	129239031	Nonsense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10		129239031	68783399	7	4195											
PRDM8	56978	mdanderson.org	37	chr4	81123665	81123665	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccaaggaggatctggtgtGcacaccgcagcagtaccgag	13	12	1	0	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_001099403	exon4	c.G1049T	p.C350F	TGGTGTGCACACC		19	2	0.11	27	0	0				1	0	0				T	81123665	G	T	81123665	3	4	60	1	0	0	0	0	1	0	0	0	12513	1319	46	2	1059	2	PRDM8	4	81123665	Missense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10		81123665	110030611	8	4196											
DSPP	1834	bcgsc.ca	37	chr4	88537036	88537036	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatagcagtgacagcagtgaCagcagcgacagcagtgatag	14	8	0	3	rs367922244		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	DSPP,NS,carcinoma,0,1	DSPP	NM_014208	exon5	c.C3222T	p.D1074D	CAGTGACAGCAGC		72	12	0.17	117	1	0.0085470085		174	1	0	0					T	88537036	C	T	88537036	2	4	60	1	0	0	0	0	0	0	0	1	4808	477	17	3		3	DSPP	4	88537036	Silent	SNP	C	TCGA-2G-AAKM-01A-11D-A42Y-10	7413371	88537036	102617240	9	4197											
MYO10	4651	mdanderson.org	37	chr5	16673975	16673975	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcgtatttttccatctcgCttcctggaaactgttcccgt	8	12	1	0	rs25901	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_012334	exon36	c.G4988A	p.S1663N	ATCTCGCTTCCTG		64	2	0.03	92	0	0				65	0	0				T	16673975	C	T	16673975	3	4	60	1	0	0	0	0	1	0	0	0	10109	797	28	2	1212	2	MYO10	5	16673975	Missense_Mutation	SNP	C	TCGA-2G-AAKM-01A-11D-A42Y-10		16673975	164241285	10	4198											
APBB3	10307	broad.mit.edu	37	chr5	139938282	139938282	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccctcctttgagcagggggAggggcaggggacctcctggg	18	12	0	1	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	APBB3	NM_006051	exon12	c.T1370C	p.L457P	AGGGGGAGGGGCA		286	5	0.02	304	2	0.0065789474		34		11	0	0				G	139938282	A	G	139938282	3	3	60	1	0	0	0	0	1	0	0	0	758	304	11	4	115	4	APBB3	5	139938282	Missense_Mutation	SNP	A	TCGA-2G-AAKM-01A-11D-A42Y-10	123264307	139938282	40976978	11	4199											
EXOC2	55770	mdanderson.org	37	chr6	598057	598057	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcatgtaaagttgatggtGtctcaagcaatttatccaga	10	6	2	2	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_018303	exon10	c.C1037A	p.T346K	GATGGTGTCTCAA		85	4	0.05	95	0	0				22	0	0				T	598057	G	T	598057	3	4	60	1	0	0	0	0	1	0	0	0	5329	1377	48	3	1813	3	EXOC2	6	598057	Missense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10		598057	170517010	12	4200											
CUTA	51596	broad.mit.edu	37	chr6	33384432	33384432	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaacagggctcatcatgGcaggactgtgatagagtcag	14	8	3	2	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	CUTA	NM_001014433	exon6	c.C592A	p.P198T	ATCATGGCAGGAC		206	4	0.02	247	0	0		5		218	0	0				T	33384432	G	T	33384432	4	4	60	1	0	0	0	0	0	1	0	0	4085	1203	42	2	8	2	CUTA	6	33384432	Nonsense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10	32786375	33384432	137730635	13	4201											
GJA1	2697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	121768358	121768358	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcccaaactgatggtgtcaAtgtggacatgcacttgaagc	11	9	1	2	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_000165	exon2	c.A365G	p.N122S	GTGTCAATGTGGA		168	40	0.24	131	0	0				218	49	0.22				G	121768358	A	G	121768358	3	3	60	1	0	0	0	0	1	0	0	0	6441	101	4	4	367	4	GJA1	6	121768358	Missense_Mutation	SNP	A	TCGA-2G-AAKM-01A-11D-A42Y-10	88383926	121768358	49346709	14	4202											
MTHFD1L	25902	broad.mit.edu	37	chr6	151413631	151413631	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catgccaggactgcccacccGgccctgcttttatgacatag	9	15	0	1	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	MTHFD1L	NM_001242767	exon27	c.G2879T	p.R960L	CCACCCGGCCCTG		117	4	0.03	101	0	0		75		106	0	0				T	151413631	G	T	151413631	3	4	60	1	0	0	0	0	1	0	0	0	9975	1116	39	1	2982	1	MTHFD1L	6	151413631	Missense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10	29645273	151413631	19701436	15	4203											
BUD31	8896	hgsc.bcm.edu;broad.mit.edu	37	chr7	99015089	99015089	+	Frame_Shift_Del	DEL	C	C	-													attaaagaaggctatgcagaCaaaaacctgattgcaaaatg					novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	BUD31	NM_003910	exon5	c.254delA	p.D85fs	TGCAGACAAAAAC		119	14	0.12	53	0	0		12		359	0	0				-	99015089	C	-	99015089	7	5	60	1	0	1	0	1	0	0	0	0	1577	477	17	0	265	0	BUD31	7	99015089	Frame_Shift_Del	DEL	C	TCGA-2G-AAKM-01A-11D-A42Y-10		99015089	60123574	16	4204											
SYCE1	93426	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr10	135369120	135369120	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctgccgcttctgctgctGttgttggcacttctgctgca	10	14	3	0	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	SYCE1	NM_001143763	exon11	c.C811A	p.Q271K	GCTGCTGTTGTTG		45	4	0.09	30	0	0		81		3	0	0				T	135369120	G	T	135369120	3	4	60	1	0	0	0	0	1	0	0	0	15483	1386	48	3	299	3	SYCE1	10	135369120	Missense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10		135369120	165627	17	4205											
OR51A4	401666	ucsc.edu	37	chr11	4967831	4967831	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttcttgcaatatctcaagTttcttaaagtgaaagggaag	8	5	3	1	rs61729915	bycluster;byfrequency	TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	OR51A4	NM_001005329	exon1	c.A500G	p.N167S	CTCAAGTTTCTTA		85	32	0.38	293	40	0.1365187713		73		0	0					C	4967831	T	C	4967831	3	2	60	1	0	0	0	0	1	0	0	0	11134	1725	60	4	443	4	OR51A4	11	4967831	Missense_Mutation	SNP	T	TCGA-2G-AAKM-01A-11D-A42Y-10		4967831	130038685	18	4206											
GTF2H1	2965	mdanderson.org	37	chr11	18387386	18387386	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tacaacaagctccacacatgGcagtcacggcgtctgatgaa	9	12	2	2	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_001142307	exon16	c.G1617A	p.W539X	CACATGGCAGTCA		50	3	0.06	51	0	0				75	0	0				A	18387386	G	A	18387386	4	1	60	1	0	0	0	0	0	1	0	0	6900	1212	42	2	1671	2	GTF2H1	11	18387386	Nonsense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10	13419555	18387386	116619130	19	4207											
MYBPC3	4607	mdanderson.org	37	chr11	47355259	47355259	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcacctcctcgcctgccagGggctgcccctctttggtcca	9	19	2	0	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_000256	exon28	c.C3039A	p.P1013P	TGCCAGGGGCTGC		23	3	0.13	46	0	0				1	0	0				T	47355259	G	T	47355259	2	4	60	1	0	0	0	0	0	0	0	1	10060	1219	43	3		3	MYBPC3	11	47355259	Silent	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10	28967873	47355259	87651257	20	4208											
TCIRG1	10312	mdanderson.org	37	chr11	67817527	67817527	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctggatgatgaagaggaGgccgaggtgggtgcagtgcc	20	7	0	3	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_006019	exon17	c.G2112T	p.E704D	AGAGGAGGCCGAG		49	3	0.06	36	0	0				87	0	0				T	67817527	G	T	67817527	3	4	60	1	0	0	0	0	1	0	0	0	15762	991	35	3	2174	3	TCIRG1	11	67817527	Missense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10	20462268	67817527	67188989	21	4209											
SPCS2	9789	broad.mit.edu	37	chr11	74680617	74680617	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actttatttgaacctattttGtgatgatggggattctgacc	9	6	1	4	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	SPCS2	NM_014752	exon4	c.G367T	p.V123L	TATTTTGTGATGA		86	3	0.03	129	0	0		17		18	0	0				T	74680617	G	T	74680617	3	4	60	1	0	0	0	0	1	0	0	0	15079	1377	48	3	381	3	SPCS2	11	74680617	Missense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10	6863090	74680617	60325899	22	4210											
NCAM1	4684	mdanderson.org	37	chr11	113133588	113133588	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caaccttgggaggcaattctGcatcctacacctttgtctca	7	13	2	0	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_001076682	exon20	c.G2227A	p.A743T	AATTCTGCATCCT		111	5	0.05	124	0	0				0	0					A	113133588	G	A	113133588	3	1	60	1	0	0	0	0	1	0	0	0	10248	1319	46	2	2336	2	NCAM1	11	113133588	Missense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10	38452971	113133588	21872928	23	4211											
INTS6	26512	mdanderson.org	37	chr13	51961633	51961633	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgagtttgtgacagctatgCcaaggctgagatccaaaagg	12	7	0	3	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_012141	exon7	c.G783A	p.W261X	GCTATGCCAAGGC		49	3	0.06	56	0	0				5	0	0				T	51961633	C	T	51961633	4	4	60	1	0	0	0	0	0	1	0	0	7825	740	26	2	1928	2	INTS6	13	51961633	Nonsense_Mutation	SNP	C	TCGA-2G-AAKM-01A-11D-A42Y-10		51961633	63208245	24	4212											
CUL4A	8451	mdanderson.org	37	chr13	113864355	113864355	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcacgaggcggtgcgggccGtgcagagcagcacctccatc	15	14	0	1	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_001008895	exon2	c.G217T	p.V73L	CGGGCCGTGCAGA		38	3	0.08	56	0	0				56	0	0				T	113864355	G	T	113864355	3	4	60	1	0	0	0	0	1	0	0	0	4080	1145	40	1	223	1	CUL4A	13	113864355	Missense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10	61902722	113864355	1305523	25	4213											
ANG	283	broad.mit.edu	37	chr14	21162161	21162161	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gatcagtcaattttccgtcgTccgtaaccagcgggcccctg	10	14	2	0	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	ANG	NM_001097577	exon2	c.T438G	p.R146R	CCGTCGTCCGTAA		175	4	0.02	187	0	0		8		14	0	0				G	21162161	T	G	21162161	2	3	60	1	0	0	0	0	0	0	0	1	603	1654	58	4		4	ANG	14	21162161	Silent	SNP	T	TCGA-2G-AAKM-01A-11D-A42Y-10		21162161	86187379	26	4214											
STON2	85439	mdanderson.org	37	chr14	81837529	81837529	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcatggtcaatggtaggGctggggagagaccaaaaacc	16	7	1	1	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_001256430	exon5	c.C374A	p.A125D	GGTAGGGCTGGGG		37	3	0.08	75	0	0				0	0					T	81837529	G	T	81837529	3	4	60	1	0	0	0	0	1	0	0	0	15373	1217	42	2	2353	2	STON2	14	81837529	Missense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10	60675368	81837529	25512011	27	4215											
CAPN3	825	broad.mit.edu	37	chr15	42684848	42684848	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctacagacaatcattccGgttcagtatgagacaagaat	8	9	3	3	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	CAPN3	NM_000070	exon7	c.G957T	p.P319P	CATTCCGGTTCAG		121	4	0.03	153	0	0		172		3	0	0				T	42684848	G	T	42684848	2	4	60	1	0	0	0	0	0	0	0	1	2646	1103	39	1		1	CAPN3	15	42684848	Silent	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10		42684848	59846544	28	4216											
ARIH1	25820	broad.mit.edu	37	chr15	72767235	72767235	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcggcggcggcggcggCggtggtggtggcgggccggg	28	10	0	0	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	ARIH1	NM_005744	exon1	c.C255T	p.G85G	CGGCGGCGGTGGT		42	4	0.1	54	0	0		42		0	0					T	72767235	C	T	72767235	2	4	60	1	0	0	0	0	0	0	0	1	920	755	27	1		1	ARIH1	15	72767235	Silent	SNP	C	TCGA-2G-AAKM-01A-11D-A42Y-10	30082387	72767235	29764157	29	4217											
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu	37	chr15	79284128	79284128	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaagggctcagccttcacGccttcagcctggttttgagt	10	12	4	1	rs147869279	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	RASGRF1,colon,carcinoma,0,1	RASGRF1	NM_002891	exon22	c.C3084A	p.G1028G	CTTCACGCCTTCA		94	4	0.04	102	0	0		0	1	0	0					T	79284128	G	T	79284128	2	4	60	1	0	0	0	0	0	0	0	1	13123	1074	38	1		1	RASGRF1	15	79284128	Silent	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10	6516893	79284128	23247264	30	4218											
ZNF598	90850	mdanderson.org	37	chr16	2052283	2052283	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctggcgtgcctcggcgcgGctgcgactgtggcaggccgt	17	13	1	0	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	ZNF598,NS,carcinoma,-1,1	ZNF598	NM_178167	exon7	c.C819A	p.S273R	GGCGCGGCTGCGA		32	3	0.09	17	0	0		-1	1	92	0	0				T	2052283	G	T	2052283	3	4	60	1	0	0	0	0	1	0	0	0	18084	1194	42	2	1927	2	ZNF598	16	2052283	Missense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10		2052283	88302470	31	4219											
KIF22	3835	mdanderson.org	37	chr16	29809712	29809712	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtttgatgccttctatgGggagaggagtactcagcagg	15	7	2	2	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_007317	exon3	c.G284T	p.G95V	TCTATGGGGAGAG		47	3	0.06	49	0	0				178	0	0				T	29809712	G	T	29809712	3	4	60	1	0	0	0	0	1	0	0	0	8331	1232	43	3	294	3	KIF22	16	29809712	Missense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10	27757429	29809712	60545041	32	4220											
FBXL19	54620	mdanderson.org	37	chr16	30941668	30941668	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggcggcgggctgtgcgccCtggcagtggggggcccctac	21	13	0	0	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_001099784	exon7	c.C1124A	p.P375H	TGCGCCCTGGCAG		29	3	0.1	27	0	0				24	0	0				A	30941668	C	A	30941668	3	1	60	1	0	0	0	0	1	0	0	0	5747	681	24	3	1150	3	FBXL19	16	30941668	Missense_Mutation	SNP	C	TCGA-2G-AAKM-01A-11D-A42Y-10	1131956	30941668	59413085	33	4221											
FAM65A	79567	mdanderson.org	37	chr16	67576061	67576061	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagtgaggctagtgtagatGctgccttggctgaggcttca	14	8	2	3	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_001193523	exon13	c.G1432T	p.A478S	GTAGATGCTGCCT		52	3	0.06	70	1	0.0142857143				18	0	0				T	67576061	G	T	67576061	3	4	60	1	0	0	0	0	1	0	0	0	5633	1319	46	2	1418	2	FAM65A	16	67576061	Missense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10	36634393	67576061	22778692	34	4222											
SMTNL2	342527	mdanderson.org	37	chr17	4500213	4500213	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagcttcggcgtggccagcGccagcagcatcaagcagatc	13	13	1	2	rs200110141	by1000genomes	TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_001114974	exon6	c.G1048A	p.A350T	GCCAGCGCCAGCA		42	3	0.07	37	0	0	0			9	0	0				A	4500213	G	A	4500213	3	1	60	1	0	0	0	0	1	0	0	0	14869	1087	38	1	1070	1	SMTNL2	17	4500213	Missense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10		4500213	76694997	35	4223											
RPAIN	84268	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	5324644	5324644	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagagaatgagaaacagccGggacaggctcctaaacaggt	14	8	0	2	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	RPAIN	NM_001160246	exon2	c.G110C	p.R37P	ACAGCCGGGACAG		127	13	0.1	98	1	0.0102040816		24		207	25	0.12				C	5324644	G	C	5324644	3	2	60	1	0	0	0	0	1	0	0	0	13591	1116	39	5	116	5	RPAIN	17	5324644	Missense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10	824431	5324644	75870566	36	4224											
CHD3	1107	broad.mit.edu	37	chr17	7812537	7812537	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtcgcaggagccggcgcAccccgccatggccctccacg	12	20	0	0	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	CHD3,NS,carcinoma,0,1	CHD3	NM_001005271	exon37	c.A5648C	p.H1883P	CGGCGCACCCCGC		101	20	0.2	63	9	0.1428571429		169	1	41	2	0.05				C	7812537	A	C	7812537	3	2	60	1	0	0	0	0	1	0	0	0	3348	159	6	4	5898	4	CHD3	17	7812537	Missense_Mutation	SNP	A	TCGA-2G-AAKM-01A-11D-A42Y-10	2487893	7812537	73382673	37	4225											
TOP2A	7153	broad.mit.edu	37	chr17	38555154	38555154	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttttcagtttccttttcGttgtcactctcttcattttc	3	12	5	0	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	TOP2A,colon,carcinoma,0,1	TOP2A	NM_001067	exon26	c.C3324A	p.N1108K	CTTTTCGTTGTCA		165	4	0.02	136	0	0		124	1	184	0	0				T	38555154	G	T	38555154	3	4	60	1	0	0	0	0	1	0	0	0	16425	1136	40	1	1311	1	TOP2A	17	38555154	Missense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10	30742617	38555154	42640056	38	4226											
LRRC59	55379	broad.mit.edu	37	chr17	48460490	48460490	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acccgacaagcaaccagcccTcccgccacaccaaatagcag	6	19	0	0	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	LRRC59	NM_018509	exon7	c.A783G	p.G261G	CAGCCCTCCCGCC		101	22	0.22	69	17	0.2463768116		23		339	32	0.09				C	48460490	T	C	48460490	2	2	60	1	0	0	0	0	0	0	0	1	9059	1538	54	4		4	LRRC59	17	48460490	Silent	SNP	T	TCGA-2G-AAKM-01A-11D-A42Y-10	9905336	48460490	32734720	39	4227											
RPTOR	57521	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	78858821	78858821	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgcaggtccgctgcgcagCggtcttcgcccttggcacgt	13	15	1	0	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	RPTOR,rectum,carcinoma,0,1	RPTOR	NM_020761	exon17	c.C1856T	p.A619V	GCGCAGCGGTCTT		219	7	0.03	174	0	0		122	1	19	1	0.05	rescued with RNA-seq			T	78858821	C	T	78858821	3	4	60	1	0	0	0	0	1	0	0	0	13716	768	27	1	1922	1	RPTOR	17	78858821	Missense_Mutation	SNP	C	TCGA-2G-AAKM-01A-11D-A42Y-10	30398331	78858821	2336389	40	4228											
C17orf70	80233	mdanderson.org	37	chr17	79507958	79507958	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagccggtcgcgcagggtctGcacctcccgcagcagtgtct	14	15	2	0	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_025161	exon9	c.C2533T	p.Q845X	GGGTCTGCACCTC		32	3	0.09	15	0	0				91	0	0				A	79507958	G	A	79507958	4	1	60	1	0	0	0	0	0	1	0	0	1886	1328	46	2	116	2	C17orf70	17	79507958	Nonsense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10	649137	79507958	1687252	41	4229											
CTAGE1	64693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	19997302	19997302	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaaggtcattttggcttcaGctacttgtgatttgagggat	12	5	2	3	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_172241	exon1	c.C473G	p.A158G	GCTTCAGCTACTT		82	26	0.32	113	0	0				1	0	0				C	19997302	G	C	19997302	3	2	60	1	0	0	0	0	1	0	0	0	4017	971	34	5	1768	5	CTAGE1	18	19997302	Missense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10		19997302	58079946	42	4230											
PHLPP1	23239	mdanderson.org	37	chr18	60384158	60384158	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagacggcttcctcgcctcaGccgcagcagaaagccccgag	11	17	1	2	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_194449	exon1	c.G1242T	p.Q414H	GCCTCAGCCGCAG		16	2	0.13	12	0	0				2	0	0				T	60384158	G	T	60384158	3	4	60	1	0	0	0	0	1	0	0	0	11901	962	34	2	1244	2	PHLPP1	18	60384158	Missense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10	40386856	60384158	17693090	43	4231											
FBL	2091	hgsc.bcm.edu	37	chr19	40325395	40325395	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatgttctcctgttgcatcTttttcacttcggaggcaaac	7	11	4	0	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	FBL,NS,carcinoma,+1,1	FBL	NM_001436	exon8	c.A854G	p.K285R	TGCATCTTTTTCA		100	4	0.04	105	1	0.0095238095		1	1	1842	1	0				C	40325395	T	C	40325395	3	2	60	1	0	0	0	0	1	0	0	0	5728	1609	56	4	119	4	FBL	19	40325395	Missense_Mutation	SNP	T	TCGA-2G-AAKM-01A-11D-A42Y-10		40325395	18803588	44	4232											
BLVRB	645	mdanderson.org	37	chr19	40964299	40964299	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcagtactgaggtcattgCgggtgcccagcagcacgatg	14	11	2	1	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_000713	exon2	c.G233A	p.R78H	TCATTGCGGGTGC		29	3	0.1	50	0	0				126	0	0				T	40964299	C	T	40964299	3	4	60	1	0	0	0	0	1	0	0	0	1451	768	27	1	403	1	BLVRB	19	40964299	Missense_Mutation	SNP	C	TCGA-2G-AAKM-01A-11D-A42Y-10	638904	40964299	18164684	45	4233											
SPTBN4	57731	broad.mit.edu	37	chr19	41073695	41073695	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcggccagggggctatgaaAggggcttggagcccctggcc	18	11	0	1	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	SPTBN4	NM_020971	exon31	c.A6463G	p.R2155G	TATGAAAGGGGCT		77	19	0.25	91	13	0.1428571429		213		0	0					G	41073695	A	G	41073695	3	3	60	1	0	0	0	0	1	0	0	0	15176	63	3	4	6675	4	SPTBN4	19	41073695	Missense_Mutation	SNP	A	TCGA-2G-AAKM-01A-11D-A42Y-10	109396	41073695	18055288	46	4234											
RPS19	6223	mdanderson.org	37	chr19	42364899	42364899	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagttcgtcagagctctgGcagccttcctcaaaaagtga	11	10	3	2	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_001022	exon2	c.G55A	p.A19T	GCTCTGGCAGCCT		44	3	0.07	69	0	0				9413	2	0				A	42364899	G	A	42364899	3	1	60	1	0	0	0	0	1	0	0	0	13680	1203	42	2	57	2	RPS19	19	42364899	Missense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10	1291204	42364899	16764084	47	4235											
BLOC1S3	388552	broad.mit.edu	37	chr19	45682769	45682769	+	Frame_Shift_Del	DEL	A	A	-													ggagccggagccggagccggAaccgacggccgcgccgaggg					novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	BLOC1S3	NM_212550	exon2	c.215delA	p.E72fs	AGCCGGAACCGAC		6	2	0.33	5	0	0		4		0	0					-	45682769	A	-	45682769	7	5	60	1	0	1	0	1	0	0	0	0	1449	246	9	0	217	0	BLOC1S3	19	45682769	Frame_Shift_Del	DEL	A	TCGA-2G-AAKM-01A-11D-A42Y-10	3317870	45682769	13446214	48	4236											
BAGE	85319	broad.mit.edu	37	chr21	11058613	11058614	+	RNA	INS	-	-	A													aaacctaaagatttttttttINSaaagcaaatagtaatatggt					rs377480117	bycluster	TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	.	.	.	.	TTTTTTTAAAGCA		7	2	0.29	6	0	0				0	0					A	11058614	-	A	11058613	6	5	60	0	1	1	1	0	0	0	0	0	1289	1769	61	0		0	BAGE	21	11058613	RNA	INS	-	TCGA-2G-AAKM-01A-11D-A42Y-10		11058613	37071282	49	4237											
SLC7A4	6545	mdanderson.org	37	chr22	21385978	21385978	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acccacgcccagaagagtcaGgtccagcgtggacaggcagc	13	14	1	2	novel		TCGA-2G-AAKM-01A-11D-A42Y-10	TCGA-2G-AAKM-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a8473a77-81c3-414f-b0a5-86648ae24892	b3877f2d-d476-43dd-8e0c-008ad1e0029a	.	.	NM_004173	exon2	c.C124A	p.L42M	GAGTCAGGTCCAG		46	3	0.07	59	0	0				0	0					T	21385978	G	T	21385978	3	4	60	1	0	0	0	0	1	0	0	0	14753	991	35	3	1799	3	SLC7A4	22	21385978	Missense_Mutation	SNP	G	TCGA-2G-AAKM-01A-11D-A42Y-10		21385978	29918588	50	4238											
SPEN	23013	bcgsc.ca	37	chr1	16199321	16199321	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttccagatatggccgcGtggaaagtgtcaaaattctt	9	7	2	1	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	SPEN,NS,carcinoma,0,1	SPEN	NM_015001	exon2	c.G94T	p.V32L	GGCCGCGTGGAAA		55	0	0	52	0	0		374	1	74	0	0				T	16199321	G	T	16199321	3	4	61	1	0	0	0	0	1	0	0	0	15093	1145	40	1	100	1	SPEN	1	16199321	Missense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10		16199321	233051300	1	4239											
SPEN	23013	mdanderson.org	37	chr1	16258924	16258924	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	accgcccctgttgaagttgtAgagaaaaaaccggcccctga	10	12	0	3	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_015001	exon11	c.A6189G	p.V2063V	AGTTGTAGAGAAA		59	3	0.05	88	0	0				255	0	0				G	16258924	A	G	16258924	2	3	61	1	0	0	0	0	0	0	0	1	15093	407	15	4		4	SPEN	1	16258924	Silent	SNP	A	TCGA-2G-AAKO-01A-11D-A42Y-10	59603	16258924	232991697	2	4240											
ECE1	1889	mdanderson.org	37	chr1	21560084	21560084	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggctttcctgagctgatcgGcagtgaccctccatgagaag	13	11	0	4	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001397	exon14	c.C1637T	p.A546V	TGATCGGCAGTGA		59	4	0.07	51	0	0				119	0	0				A	21560084	G	A	21560084	3	1	61	1	0	0	0	0	1	0	0	0	4915	1203	42	2	699	2	ECE1	1	21560084	Missense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10	5301160	21560084	227690537	3	4241											
ZMYM4	9202	bcgsc.ca	37	chr1	35836147	35836147	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tactcagctattctgctccaCactgtgcctcactggatata	6	13	3	0	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	ZMYM4	NM_005095	exon7	c.C1100T	p.T367I	GCTCCACACTGTG		76	0	0	97	0	0		143		31	0	0				T	35836147	C	T	35836147	3	4	61	1	0	0	0	0	1	0	0	0	17759	478	17	3	1126	3	ZMYM4	1	35836147	Missense_Mutation	SNP	C	TCGA-2G-AAKO-01A-11D-A42Y-10	14276063	35836147	213414474	4	4242											
NRAS	4893	bcgsc.ca	37	chr1	115256529	115256529	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatggcactgtactcttctTgtccagctgtatccagtatg	8	11	3	0	rs11554290	bycluster;byfrequency;byhapmap	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	NRAS,NS,haematopoietic_neoplasm,-1,2068	NRAS	NM_002524	exon3	c.A182G	p.Q61R	TCTTCTTGTCCAG		124	0	0	103	0	0		3766	2068	68	0	0				C	115256529	T	C	115256529	3	2	61	1	0	0	0	0	1	0	0	0	10687	1812	63	4	399	4	NRAS	1	115256529	Missense_Mutation	SNP	T	TCGA-2G-AAKO-01A-11D-A42Y-10	79420382	115256529	133994092	5	4243											
CR1	1378	broad.mit.edu	37	chr1	207749012	207749012	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccattggagcacgaagccGccaatttgtcaacgtgagtt	11	11	1	1	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	CR1	NM_000651	exon28	c.G4524A	p.P1508P	GAAGCCGCCAATT		286	4	0.01	287	0	0		354		6	0	0				A	207749012	G	A	207749012	2	1	61	1	0	0	0	0	0	0	0	1	3863	1074	38	1		1	CR1	1	207749012	Silent	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10	92492483	207749012	41501609	6	4244											
AGBL5	60509	mdanderson.org	37	chr2	27291584	27291584	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgctagggactggagctcGgatgccctgcatcaagactc	12	12	2	1	rs145155050	alternate_allele	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_021831	exon13	c.G2327T	p.R776L	GAGCTCGGATGCC		72	4	0.06	100	0	0				30	0	0				T	27291584	G	T	27291584	3	4	61	1	0	0	0	0	1	0	0	0	375	1116	39	1	2438	1	AGBL5	2	27291584	Missense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10		27291584	215907789	7	4245											
LRP2	4036	mdanderson.org	37	chr2	169997025	169997025	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccgtgcatgcacctgcatGgggggggcaggttgataggc	17	10	0	1	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_004525	exon72	c.C13139A	p.P4380Q	CTGCATGGGGGGG		43	3	0.07	45	0	0				0	0					T	169997025	G	T	169997025	3	4	61	1	0	0	0	0	1	0	0	0	9000	1348	47	3	860	3	LRP2	2	169997025	Missense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10	142705441	169997025	73202348	8	4246											
SI	6476	bcgsc.ca	37	chr3	164709207	164709207	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	caccacggacatgtaggtttAttgtgtcataagaagcatta	9	7	1	1	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	SI	NM_001041	exon44	c.T5042A	p.I1681K	AGGTTTATTGTGT		147	0	0	135	0	0		500		0	0					T	164709207	A	T	164709207	3	4	61	1	0	0	0	0	1	0	0	0	14351	449	16	5	461	5	SI	3	164709207	Missense_Mutation	SNP	A	TCGA-2G-AAKO-01A-11D-A42Y-10		164709207	33313223	9	4247											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr4	55593603	55593603	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aacccatgtatgaagtacagTggaaggttgttgaggagata	13	4	0	3	rs121913235	bycluster	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	KIT,NS,germ_cell_tumour,0,64	KIT	NM_000222	exon11	c.T1669G	p.W557G	GTACAGTGGAAGG		115	11	0.1	123	0	0		0	64	174	52	0.3				G	55593603	T	G	55593603	3	3	61	1	0	0	0	0	1	0	0	0	8371	1696	59	4	1711	4	KIT	4	55593603	Missense_Mutation	SNP	T	TCGA-2G-AAKO-01A-11D-A42Y-10		55593603	135560673	10	4248											
DSPP	1834	broad.mit.edu	37	chr4	88536079	88536079	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcagcaacagcagtgacagTagcgatagcagtgacagcag	13	9	0	2	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	DSPP	NM_014208	exon5	c.T2265C	p.S755S	TGACAGTAGCGAT		92	10	0.11	78	1	0.0128205128		174		0	0					C	88536079	T	C	88536079	2	2	61	1	0	0	0	0	0	0	0	1	4808	1635	57	4		4	DSPP	4	88536079	Silent	SNP	T	TCGA-2G-AAKO-01A-11D-A42Y-10	32942476	88536079	102618197	11	4249											
DCHS2	54798	mdanderson.org	37	chr4	155411422	155411422	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccacactcgcaccacgccGctcagctcctccaccgcgaa	6	22	1	0	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001142552	exon1	c.C1086A	p.S362R	CACGCCGCTCAGC		36	3	0.08	62	0	0				0	0					T	155411422	G	T	155411422	3	4	61	1	0	0	0	0	1	0	0	0	4311	1078	38	1	9998	1	DCHS2	4	155411422	Missense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10	66875343	155411422	35742854	12	4250											
PLEKHG4B	153478	mdanderson.org	37	chr5	144949	144949	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccctccccaggaaagagGtccgggacctggggctggtt	14	12	0	1	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_052909	exon4	c.G751T	p.V251F	AAAGAGGTCCGGG		51	4	0.08	51	0	0				29	0	0				T	144949	G	T	144949	3	4	61	1	0	0	0	0	1	0	0	0	12119	1261	44	3	765	3	PLEKHG4B	5	144949	Missense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10		144949	180770311	13	4251											
MBOAT1	154141	mdanderson.org	37	chr6	20151480	20151480	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cattaacaccagcacaaaaaGatgcacagagtacctttaag	6	10	0	2	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001080480	exon3	c.C259A	p.L87I	CAAAAAGATGCAC		43	3	0.07	34	0	0				15	0	0				T	20151480	G	T	20151480	3	4	61	1	0	0	0	0	1	0	0	0	9405	942	33	3	1272	3	MBOAT1	6	20151480	Missense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10		20151480	150963587	14	4252											
COL11A2	1302	mdanderson.org	37	chr6	33133977	33133977	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttggctcctttggggccagCaggtccctgtgaaatgagga	14	9	0	2	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_080680	exon61	c.G4399A	p.A1467T	GGCCAGCAGGTCC		29	3	0.1	29	0	0				1	0	0				T	33133977	C	T	33133977	3	4	61	1	0	0	0	0	1	0	0	0	3691	710	25	2	835	2	COL11A2	6	33133977	Missense_Mutation	SNP	C	TCGA-2G-AAKO-01A-11D-A42Y-10	12982497	33133977	137981090	15	4253											
BAK1	578	mdanderson.org	37	chr6	33543581	33543581	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagctcacctgctaggttgCagaggtaaggtgaccatctc	12	10	2	2	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001188	exon3	c.G195A	p.L65L	AGGTTGCAGAGGT		39	3	0.08	53	0	0				55	0	0				T	33543581	C	T	33543581	2	4	61	1	0	0	0	0	0	0	0	1	1303	697	25	2		2	BAK1	6	33543581	Silent	SNP	C	TCGA-2G-AAKO-01A-11D-A42Y-10	409604	33543581	137571486	16	4254											
KLC4	89953	broad.mit.edu	37	chr6	43039101	43039101	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccatgtacaggagtttgGgtctgtggatggtgagtggt	17	5	1	1	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	KLC4	NM_201523	exon9	c.G1298T	p.G433V	AGTTTGGGTCTGT		155	4	0.03	154	0	0		89		22	0	0				T	43039101	G	T	43039101	3	4	61	1	0	0	0	0	1	0	0	0	8378	1232	43	3	1401	3	KLC4	6	43039101	Missense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10	9495520	43039101	128075966	17	4255											
C6orf70	55780	hgsc.bcm.edu;mdanderson.org	37	chr6	170175417	170175417	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gggctctgctgcctttccccGaagaactcactcggcaagcc	10	16	2	1	rs376417698	alternate_allele	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	C6orf70,NS,carcinoma,0,1	C6orf70	NM_018341	exon14	c.G1369T	p.E457X	TTCCCCGAAGAAC		52	3	0.06	58	0	0		0	1	106	0	0				T	170175417	G	T	170175417	4	4	61	1	0	0	0	0	0	1	0	0	2385	1059	37	1	1423	1	C6orf70	6	170175417	Nonsense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10	127136316	170175417	939650	18	4256											
PHTF2	57157	broad.mit.edu	37	chr7	77531162	77531162	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcgagttgtatttttccccTttttcttccggtggtggtta	9	8	1	0	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	PHTF2	NM_001127359	exon5	c.T268C	p.F90L	TTCCCCTTTTTCT		308	5	0.02	336	0	0		104		199	0	0				C	77531162	T	C	77531162	3	2	61	1	0	0	0	0	1	0	0	0	11910	1609	56	4	286	4	PHTF2	7	77531162	Missense_Mutation	SNP	T	TCGA-2G-AAKO-01A-11D-A42Y-10		77531162	81607501	19	4257											
MUC17	140453	hgsc.bcm.edu	37	chr7	100678918	100678918	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atacctgtcagcaccacgccGgtagtcagttctgaggctag	11	12	3	1	rs200627718	byfrequency	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	MUC17,colon,carcinoma,+1,1	MUC17	NM_001040105	exon3	c.G4221A	p.P1407P	CACGCCGGTAGTC		86	5	0.06	85	1	0.0117647059	0.002	1	1	0	0					A	100678918	G	A	100678918	2	1	61	1	0	0	0	0	0	0	0	1	10021	1103	39	1		1	MUC17	7	100678918	Silent	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10	23147756	100678918	58459745	20	4258											
LAMB1	3912	mdanderson.org	37	chr7	107570055	107570055	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaatgctgtccaaatcaGcactatcctctgtgaaaagc	6	12	3	1	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_002291	exon30	c.C4547A	p.A1516D	AAATCAGCACTAT		89	4	0.04	89	0	0				65	0	0				T	107570055	G	T	107570055	3	4	61	1	0	0	0	0	1	0	0	0	8648	971	34	2	833	2	LAMB1	7	107570055	Missense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10	6891137	107570055	51568608	21	4259											
SSPO	23145	mdanderson.org	37	chr7	149474940	149474940	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagcctggacactgtcagCgggtgagggagggagatggg	19	9	1	2	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_198455	exon5	c.C739T	p.R247W	TGTCAGCGGGTGA		20	2	0.1	30	0	0				0	0					T	149474940	C	T	149474940	3	4	61	1	0	0	0	0	1	0	0	0	15244	759	27	1	757	1	SSPO	7	149474940	Missense_Mutation	SNP	C	TCGA-2G-AAKO-01A-11D-A42Y-10	41904885	149474940	9663723	22	4260											
KCNH2	3757	hgsc.bcm.edu	37	chr7	150671831	150671831	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaggcgatttccactttgCgctcctcggcgcccagcagt	11	14	0	1	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_000238	exon2	c.G275A	p.R92H	ACTTTGCGCTCCT		121	5	0.04	123	0	0				17	0	0				T	150671831	C	T	150671831	3	4	61	1	0	0	0	0	1	0	0	0	8075	768	27	1	3641	1	KCNH2	7	150671831	Missense_Mutation	SNP	C	TCGA-2G-AAKO-01A-11D-A42Y-10	1196891	150671831	8466832	23	4261											
ERICH1	157697	bcgsc.ca	37	chr8	623373	623373	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtaattgtatcatcttcctCgctggcgtctgcaccgtcct	9	13	3	0	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	ERICH1,NS,carcinoma,+1,1	ERICH1	NM_207332	exon4	c.G979A	p.E327K	CTTCCTCGCTGGC		115	0	0	134	0	0		50	1	64	0	0				T	623373	C	T	623373	3	4	61	1	0	0	0	0	1	0	0	0	5258	893	31	1	364	1	ERICH1	8	623373	Missense_Mutation	SNP	C	TCGA-2G-AAKO-01A-11D-A42Y-10		623373	145740649	24	4262											
CHRNA2	1135	mdanderson.org	37	chr8	27327404	27327404	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagccggtcctcagtctcGgtatgcgagcctccctgcgg	13	14	2	1	rs200729883	by1000genomes;alternate_allele	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_000742	exon3	c.C168A	p.T56T	AGTCTCGGTATGC		73	5	0.07	70	0	0				0	0					T	27327404	G	T	27327404	2	4	61	1	0	0	0	0	0	0	0	1	3405	1103	39	1		1	CHRNA2	8	27327404	Silent	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10	26704031	27327404	119036618	25	4263											
PURG	29942	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr8	30889696	30889696	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgccagtcccccgcatcatGgtttgtctaatccgtaggaa	9	12	2	0	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	PURG_ENST00000475541,colon,carcinoma,-2,2	PURG_ENST00000475541	NM_013357	exon1	c.C603A	p.T201T	CATCATGGTTTGT		114	8	0.07	117	0	0		-2	2	0	0					T	30889696	G	T	30889696	2	4	61	1	0	0	0	0	0	0	0	1	12880	1335	47	3		3	PURG	8	30889696	Silent	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10	3562292	30889696	115474326	26	4264											
GDAP1	54332	bcgsc.ca	37	chr8	75262792	75262792	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcattctgtaccattggacGcattcgttcagctctcaaaa	6	12	4	0	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	GDAP1	NM_018972	exon1	c.G96T	p.T32T	TTGGACGCATTCG		41	0	0	60	0	0		36		8	0	0				T	75262792	G	T	75262792	2	4	61	1	0	0	0	0	0	0	0	1	6347	1074	38	1		1	GDAP1	8	75262792	Silent	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10	44373096	75262792	71101230	27	4265											
DNM1	1759	mdanderson.org	37	chr9	130996383	130996383	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcgagggccgcactaaggaGcaggtgagccccgcagcacc	15	15	0	1	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	TAAGGAGCAGGTG		48	3	0.06	48	0	0				24	0	0				T	130996383	G	T	130996383	3	4	61	1	0	0	0	0	1	0	0	0	4697	962	34	2	1461	2	DNM1	9	130996383	Missense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10		130996383	10217048	28	4266											
ARMC3	219681	bcgsc.ca	37	chr10	23290962	23290962	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgctggtgacgagctgacgGccaatgaattatgcaggctc	14	9	0	3	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	ARMC3	NM_173081	exon12	c.G1540A	p.A514T	CTGACGGCCAATG		109	0	0	113	0	0		102		2	0	0				A	23290962	G	A	23290962	3	1	61	1	0	0	0	0	1	0	0	0	951	1203	42	2	1582	2	ARMC3	10	23290962	Missense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10		23290962	112243785	29	4267											
UNC5B	219699	mdanderson.org	37	chr10	73056412	73056412	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accctggagaggcacagcttGgcctccacagagctcacctg	11	15	1	2	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_170744	exon15	c.G2403T	p.L801F	CAGCTTGGCCTCC		41	3	0.07	67	0	0				2	0	0				T	73056412	G	T	73056412	3	4	61	1	0	0	0	0	1	0	0	0	17051	1339	47	3	2461	3	UNC5B	10	73056412	Missense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10	49765450	73056412	62478335	30	4268											
SMC3	9126	bcgsc.ca	37	chr10	112361739	112361739	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tatagttgtttcgaaaacttGagcagtgcaacacagaatta	8	6	0	2	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	SMC3	NM_005445	exon25	c.G2908C	p.E970Q	AAACTTGAGCAGT		144	0	0	140	0	0		103		483	1	0				C	112361739	G	C	112361739	3	2	61	1	0	0	0	0	1	0	0	0	14837	1291	45	5	3006	5	SMC3	10	112361739	Missense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10	39305327	112361739	23173008	31	4269											
MTG1	92170	mdanderson.org	37	chr10	135207793	135207793	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggagaacttccccctgtgCggtcgcgacgtggcgcgctg	16	14	0	1	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_138384	exon1	c.C69T	p.C23C	CCTGTGCGGTCGC		14	2	0.14	12	0	0				72	0	0				T	135207793	C	T	135207793	2	4	61	1	0	0	0	0	0	0	0	1	9973	776	27	1		1	MTG1	10	135207793	Silent	SNP	C	TCGA-2G-AAKO-01A-11D-A42Y-10	22846054	135207793	326954	32	4270											
KRTAP5-5	439915	mdanderson.org	37	chr11	1651442	1651442	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtggctcctgtgggggGtccaaggggggctgtggctc	21	9	0	0	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	KRTAP5-5,bladder,carcinoma,0,4	KRTAP5-5	NM_001001480	exon1	c.G372C	p.G124G	TGGGGGGTCCAAG		35	4	0.11	48	4	0.0833333333		0	4	0	0					C	1651442	G	C	1651442	2	2	61	1	0	0	0	0	0	0	0	1	8602	1248	44	5		5	KRTAP5-5	11	1651442	Silent	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10		1651442	133355074	33	4271											
FOLH1	2346	bcgsc.ca	37	chr11	49204790	49204790	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaattccacgcctataagcAtattctgaaaaaaaaaattg	5	8	1	1	rs76509850	bycluster;byfrequency	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	FOLH1	NM_004476	exon7	c.T831C	p.Y277Y	ATAAGCATATTCT		153	8	0.05	182	2	0.010989011		141		0	0					G	49204790	A	G	49204790	2	3	61	1	0	0	0	0	0	0	0	1	6011	224	8	4		4	FOLH1	11	49204790	Silent	SNP	A	TCGA-2G-AAKO-01A-11D-A42Y-10	47553348	49204790	85801726	34	4272											
C11orf92	399948	mdanderson.org	37	chr11	111168758	111168758	+	RNA	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cagatgggggatgcgggaatCagtctggccagccagtctgg	17	9	3	1	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	.	.	.	.	GGGAATCAGTCTG		41	3	0.07	63	0	0				0	0					T	111168758	C	T	111168758	1	4	61	0	1	0	0	0	0	0	0	0	1677	841	29	3		3	C11orf92	11	111168758	RNA	SNP	C	TCGA-2G-AAKO-01A-11D-A42Y-10	61963968	111168758	23837758	35	4273											
NCAM1	4684	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr11	113076296	113076296	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggagttccgggagggggAagatgccgtgattgtgtgtg	19	5	0	2	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001242608	exon5	c.A398G	p.E133G	AGGGGGAAGATGC		115	5	0.04	137	0	0				3	0	0				G	113076296	A	G	113076296	3	3	61	1	0	0	0	0	1	0	0	0	10248	246	9	4	413	4	NCAM1	11	113076296	Missense_Mutation	SNP	A	TCGA-2G-AAKO-01A-11D-A42Y-10	1907538	113076296	21930220	36	4274											
PHLDB1	23187	mdanderson.org	37	chr11	118498701	118498701	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccaagtttcagcctccaGtccctgctccccgaaacaag	7	18	1	0	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001144758	exon6	c.G1162T	p.V388F	CCTCCAGTCCCTG		39	3	0.08	70	0	0				22	0	0				T	118498701	G	T	118498701	3	4	61	1	0	0	0	0	1	0	0	0	11898	1029	36	3	1180	3	PHLDB1	11	118498701	Missense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10	5422405	118498701	16507815	37	4275											
KDM5A	5927	bcgsc.ca	37	chr12	459828	459828	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tctccgcccatccttcaccgGaaatccacttccaaagtctt	4	17	3	0	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	KDM5A_ENST00000399788,NS,carcinoma,+1,4	KDM5A	NM_001042603	exon10	c.C1267T	p.P423S	TCACCGGAAATCC		219	0	0	183	0	0		307	4	39	0	0				A	459828	G	A	459828	3	1	61	1	0	0	0	0	1	0	0	0	8175	1174	41	3	3881	3	KDM5A	12	459828	Missense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10		459828	133392067	38	4276											
PTPRB	5787	bcgsc.ca	37	chr12	70970172	70970172	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acagccttacctgtccgctcTtggctgaaggagtgattttc	10	11	1	2	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	PTPRB	NM_001109754	exon11	c.A2832T	p.Q944H	CCGCTCTTGGCTG		110	0	0	108	0	0		676		8	0	0				A	70970172	T	A	70970172	3	1	61	1	0	0	0	0	1	0	0	0	12847	1606	56	5	3911	5	PTPRB	12	70970172	Missense_Mutation	SNP	T	TCGA-2G-AAKO-01A-11D-A42Y-10	70510344	70970172	62881723	39	4277											
CCDC60	160777	mdanderson.org	37	chr12	119866560	119866560	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acctcaaaaaggaccttataCgaagccggtgagtgagccca	10	11	1	2	rs373119369		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	CCDC60,NS,malignant_melanoma,-1,3	CCDC60	NM_178499	exon2	c.C163T	p.R55X	CTTATACGAAGCC		52	3	0.06	48	0	0		-1	3	0	0					T	119866560	C	T	119866560	4	4	61	1	0	0	0	0	0	1	0	0	2851	528	19	1	169	1	CCDC60	12	119866560	Nonsense_Mutation	SNP	C	TCGA-2G-AAKO-01A-11D-A42Y-10	48896388	119866560	13985335	40	4278											
KIAA0391	0	bcgsc.ca	37	chr14	35593060	35593060	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtctttgaaattatgaaagcCagatataagactttagaacc	7	6	1	5	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	KIAA0391	NM_014672	exon2	c.C609G	p.A203A	GAAAGCCAGATAT		103	0	0	114	0	0		35		37	0	0				G	35593060	C	G	35593060	2	3	61	1	0	0	0	0	0	0	0	1	8213	581	21	5		5	KIAA0391	14	35593060	Silent	SNP	C	TCGA-2G-AAKO-01A-11D-A42Y-10		35593060	71756480	41	4279											
KCNH5	27133	mdanderson.org	37	chr14	63417243	63417243	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcccagtcgtaagagacgcAccacttttaaagaactgaag	10	10	0	3	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_172375	exon7	c.T977C	p.V326A	AGACGCACCACTT		14	2	0.14	21	0	0				1	0	0				G	63417243	A	G	63417243	3	3	61	1	0	0	0	0	1	0	0	0	8078	159	6	4	2043	4	KCNH5	14	63417243	Missense_Mutation	SNP	A	TCGA-2G-AAKO-01A-11D-A42Y-10	27824183	63417243	43932297	42	4280											
CYP19A1	1588	bcgsc.ca	37	chr15	51504564	51504564	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcattgggtttggggaaaaActcgagtctgtgcatccttc	11	8	2	0	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	CYP19A1	NM_031226	exon10	c.T1216C	p.F406L	GGAAAAACTCGAG		136	0	0	138	1	0.0072463768		75		0	0					G	51504564	A	G	51504564	3	3	61	1	0	0	0	0	1	0	0	0	4171	43	2	4	303	4	CYP19A1	15	51504564	Missense_Mutation	SNP	A	TCGA-2G-AAKO-01A-11D-A42Y-10		51504564	51026828	43	4281											
ATF7IP2	80063	mdanderson.org	37	chr16	10531989	10531989	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gattcagcaggagatctataGcataaattatgaactatttg	8	5	2	2	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001256160	exon6	c.G992T	p.S331I	TCTATAGCATAAA		53	3	0.06	42	0	0				8	0	0				T	10531989	G	T	10531989	3	4	61	1	0	0	0	0	1	0	0	0	1087	971	34	2	1002	2	ATF7IP2	16	10531989	Missense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10		10531989	79822764	44	4282											
IL27	246778	broad.mit.edu	37	chr16	28511197	28511197	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctcctcctcTtcctcctcctcctcctccgg	2	25	1	0	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	IL27	NM_145659	exon5	c.A507G	p.E169E	CTCCTCTTCCTCC		41	5	0.12	53	0	0		27		1	0	0				C	28511197	T	C	28511197	2	2	61	1	0	0	0	0	0	0	0	1	7723	1606	56	4		4	IL27	16	28511197	Silent	SNP	T	TCGA-2G-AAKO-01A-11D-A42Y-10	17979208	28511197	61843556	45	4283											
PITPNM3	83394	mdanderson.org	37	chr17	6358778	6358778	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgggcttggggttggcggcGggcgggtcgggctgctgcac	22	10	0	0	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_031220	exon20	c.C2805A	p.P935P	GGCGGCGGGCGGG		23	3	0.13	31	0	0				0	0					T	6358778	G	T	6358778	2	4	61	1	0	0	0	0	0	0	0	1	11999	1103	39	1		1	PITPNM3	17	6358778	Silent	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10		6358778	74836432	46	4284											
TBC1D26	353149	broad.mit.edu;mdanderson.org	37	chr17	15641610	15641610	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagctgtctcaaagagtatAcaaagtcattcccctggcgg	10	10	2	1	rs202131240		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	TBC1D26	NM_178571	exon7	c.A296G	p.Y99C	GAGTATACAAAGT		89	5	0.06	89	0	0		16		0	0					G	15641610	A	G	15641610	3	3	61	1	0	0	0	0	1	0	0	0	15672	391	14	4	314	4	TBC1D26	17	15641610	Missense_Mutation	SNP	A	TCGA-2G-AAKO-01A-11D-A42Y-10	9282832	15641610	65553600	47	4285											
MED9	55090	mdanderson.org	37	chr17	17380478	17380478	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgccgccggtccctgcgccTcaaccgcagcagtcgccggc	12	21	1	0	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_018019	exon1	c.T123C	p.P41P	TGCGCCTCAACCG		52	3	0.06	74	0	0				40	0	0				C	17380478	T	C	17380478	2	2	61	1	0	0	0	0	0	0	0	1	9503	1538	54	4		4	MED9	17	17380478	Silent	SNP	T	TCGA-2G-AAKO-01A-11D-A42Y-10	1738868	17380478	63814732	48	4286											
ERAL1	26284	broad.mit.edu	37	chr17	27182148	27182148	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgagggagcgggtgatcccTttttcctcactcttaggctt	12	11	2	1	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	ERAL1,NS,carcinoma,+1,1	ERAL1	NM_005702	exon1	c.T96C	p.P32P	GATCCCTTTTTCC		145	4	0.03	157	0	0		28	1	72	0	0				C	27182148	T	C	27182148	2	2	61	1	0	0	0	0	0	0	0	1	5230	1596	56	4		4	ERAL1	17	27182148	Silent	SNP	T	TCGA-2G-AAKO-01A-11D-A42Y-10	9801670	27182148	54013062	49	4287											
ATAD5	79915	bcgsc.ca	37	chr17	29162012	29162012	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatagtcaaaagtggttatAtaagtgaatcagaaaactcc	7	5	2	2	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	ATAD5,NS,carcinoma,-2,1	ATAD5	NM_024857	exon2	c.A913G	p.I305V	GGTTATATAAGTG		230	0	0	226	0	0		150	1	8	0	0				G	29162012	A	G	29162012	3	3	61	1	0	0	0	0	1	0	0	0	1075	449	16	4	919	4	ATAD5	17	29162012	Missense_Mutation	SNP	A	TCGA-2G-AAKO-01A-11D-A42Y-10	1979864	29162012	52033198	50	4288											
HNF1B	6928	mdanderson.org	37	chr17	36104627	36104627	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggtgtgtcatagtcgtcGccgtcctcggagccctcgtc	14	13	1	0	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001165923	exon1	c.C249A	p.G83G	GTCGTCGCCGTCC		31	3	0.1	41	0	0				4	0	0				T	36104627	G	T	36104627	2	4	61	1	0	0	0	0	0	0	0	1	7292	1074	38	1		1	HNF1B	17	36104627	Silent	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10	6942615	36104627	45090583	51	4289											
FAM104A	84923	bcgsc.ca	37	chr17	71228444	71228444	+	Translation_Start_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtctgctccgcgcccccccAtgtcgctgccgccgtggtac	11	20	1	0	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	FAM104A,NS,carcinoma,+1,1	FAM104A	NM_032837	exon1	c.T2G	p.M1R	CCCCCCATGTCGC		37	0	0	34	0	0		15	1	1	0	0				C	71228444	A	C	71228444	1	2	61	1	0	0	0	0	0	0	0	0	5416	217	8	4		4	FAM104A	17	71228444	Translation_Start_Site	SNP	A	TCGA-2G-AAKO-01A-11D-A42Y-10	35123817	71228444	9966766	52	4290											
PRAM1	84106	broad.mit.edu	37	chr19	8555089	8555089	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcttaccgtcccagggggAgtggttggttttccagggga	17	8	1	0	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	PRAM1	NM_032152	exon10	c.T1997C	p.L666P	AGGGGGAGTGGTT		118	6	0.05	113	3	0.0265486726		53		9	0	0				G	8555089	A	G	8555089	3	3	61	1	0	0	0	0	1	0	0	0	12471	304	11	4	19	4	PRAM1	19	8555089	Missense_Mutation	SNP	A	TCGA-2G-AAKO-01A-11D-A42Y-10		8555089	50573894	53	4291											
SLC35E1	79939	mdanderson.org	37	chr19	16682776	16682776	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtgtgcataggacacggGcaccttccagatgctgacgt	14	10	0	2	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_024881	exon1	c.C400T	p.P134S	ACACGGGCACCTT		50	3	0.06	56	0	0				18	0	0				A	16682776	G	A	16682776	3	1	61	1	0	0	0	0	1	0	0	0	14638	1203	42	2	856	2	SLC35E1	19	16682776	Missense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10	8127687	16682776	42446207	54	4292											
CILP2	148113	ucsc.edu	37	chr19	19655587	19655587	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgtgaaggtgcgcgcctacGccaacgacaagttcaccccc	10	16	1	1	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	CILP2	NM_153221	exon8	c.G2233A	p.A745T	GCCTACGCCAACG		19	4	0.21	12	0	0		84		53	0	0				A	19655587	G	A	19655587	3	1	61	1	0	0	0	0	1	0	0	0	3452	1087	38	1	2263	1	CILP2	19	19655587	Missense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10	2972811	19655587	39473396	55	4293											
MEGF8	1954	mdanderson.org	37	chr19	42847747	42847747	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggacttgatggcgtacaaGgtgcccccctttgtgttcca	13	11	0	1	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001271938	exon9	c.G1632T	p.K544N	GTACAAGGTGCCC		23	3	0.13	35	0	0				11	0	0				T	42847747	G	T	42847747	3	4	61	1	0	0	0	0	1	0	0	0	9512	991	35	3	1666	3	MEGF8	19	42847747	Missense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10	23192160	42847747	16281236	56	4294											
PSG3	5671	hgsc.bcm.edu	37	chr19	43236936	43236936	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaacaggagatactcacGgaggagattcagggtgactg	16	6	2	3	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	PSG3,bladder,carcinoma,0,1	PSG3	NM_021016	exon3	c.C709A	p.P237T	ACTCACGGAGGAG		47	2	0.04	39	0	0		0	1	0	0					T	43236936	G	T	43236936	3	4	61	1	0	0	0	0	1	0	0	0	12704	1130	39	1	593	1	PSG3	19	43236936	Missense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10	389189	43236936	15892047	57	4295											
SCAF1	58506	bcgsc.ca	37	chr19	50154180	50154202	+	Frame_Shift_Del	DEL	CACGGGAGACGGGGGCCCTGCCC	CACGGGAGACGGGGGCCCTGCCC	-													gcccgtcacctcaccttgggCacgggagacgggggccctgc					novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	CACGGGAGACGGGGGCCCTGCCC	CACGGGAGACGGGGGCCCTGCCC					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	SCAF1	NM_021228	exon7	c.534_556del	p.178_186del	CTTGGGCACGGGA		92	0	0	93	0	0		78		63	0	0				-	50154202	CACGGGAGACGGGGGCCCTGCCC	-	50154180	7	5	61	1	0	1	0	1	0	0	0	0	13920	697	25	0	556	0	SCAF1	19	50154180	Frame_Shift_Del	DEL	CACGGGAGACGGGGGCCCTGCCC	TCGA-2G-AAKO-01A-11D-A42Y-10	6917244	50154180	8974803	58	4296											
UBE2M	9040	bcgsc.ca	37	chr19	59067702	59067702	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaagaagagatactgcaggCcataaattatggagtttatc	9	7	0	2	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	UBE2M	NM_003969	exon5	c.G392A	p.G131D	TGCAGGCCATAAA		93	0	0	115	0	0		14		254	0	0				T	59067702	C	T	59067702	3	4	61	1	0	0	0	0	1	0	0	0	16925	739	26	2	167	2	UBE2M	19	59067702	Missense_Mutation	SNP	C	TCGA-2G-AAKO-01A-11D-A42Y-10	8913522	59067702	61281	59	4297											
KRTAP10-10	353333	mdanderson.org	37	chr21	46058034	46058034	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttccctcctctgccgccccGtgtgctcccgccctgcctgc	8	22	1	0	rs1785472	by2hit2allele	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_181688	exon1	c.G700A	p.V234M	CGCCCCGTGTGCT		51	4	0.08	56	0	0				0	0					A	46058034	G	A	46058034	3	1	61	1	0	0	0	0	1	0	0	0	8548	1145	40	1	702	1	KRTAP10-10	21	46058034	Missense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10		46058034	2071861	60	4298											
DGCR2	9993	mdanderson.org	37	chr22	19052402	19052402	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctccgctcgggctggtcCcattcctgggccaggacaaa	12	14	0	0	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_005137	exon4	c.G507T	p.W169C	CTGGTCCCATTCC		46	3	0.07	45	0	0				65	0	0				A	19052402	C	A	19052402	3	1	61	1	0	0	0	0	1	0	0	0	4489	624	22	3	1173	3	DGCR2	22	19052402	Missense_Mutation	SNP	C	TCGA-2G-AAKO-01A-11D-A42Y-10		19052402	32252164	61	4299											
CLDN5	7122	mdanderson.org	37	chr22	19511708	19511708	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccacatgggcagcccgcacGccaggatcagacccccccag	11	19	1	1	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_001130861	exon1	c.C326A	p.A109E	CCGCACGCCAGGA		26	2	0.08	23	0	0				18	0	0				T	19511708	G	T	19511708	3	4	61	1	0	0	0	0	1	0	0	0	3511	1087	38	1	589	1	CLDN5	22	19511708	Missense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10	459306	19511708	31792858	62	4300											
TMPRSS6	164656	mdanderson.org	37	chr22	37480838	37480838	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggtgctgaggacgccctGggagtcgagcctgttgtcca	17	11	0	1	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_153609	exon9	c.C1042A	p.Q348K	CGCCCTGGGAGTC		25	2	0.08	40	1	0.025				1	0	0				T	37480838	G	T	37480838	3	4	61	1	0	0	0	0	1	0	0	0	16310	1357	47	3	1433	3	TMPRSS6	22	37480838	Missense_Mutation	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10	17969130	37480838	13823728	63	4301											
SH3BP1	23616	mdanderson.org	37	chr22	38044407	38044407	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaacatcgccatagtcctGggacccaacttgctgtggcc	10	14	0	0	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_018957	exon14	c.G1281T	p.L427L	AGTCCTGGGACCC		33	3	0.09	49	0	0				282	0	0				T	38044407	G	T	38044407	2	4	61	1	0	0	0	0	0	0	0	1	14297	1335	47	3		3	SH3BP1	22	38044407	Silent	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10	563569	38044407	13260159	64	4302											
ZFX	7543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chrX	24228773	24228773	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgtcagagctcaaaaagcaCatgagaatccatactgggga	10	10	2	2	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_003410	exon10	c.C1698T	p.H566H	AAAGCACATGAGA		151	20	0.13	166	0	0				25	6	0.24				T	24228773	C	T	24228773	2	4	61	1	0	0	0	0	0	0	0	1	17718	477	17	3		3	ZFX	23	24228773	Silent	SNP	C	TCGA-2G-AAKO-01A-11D-A42Y-10		24228773	131041787	65	4303											
DDX3X	1654	hgsc.bcm.edu;broad.mit.edu	37	chrX	41204800	41204801	+	Frame_Shift_Ins	INS	-	-	G													ttgacctcctaaatgcaacaINSggtaacattatgaatttttt					novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	DDX3X	NM_001356	exon12	c.1314_1315insG	p.T438fs	TGCAACAGGTAAC		214	30	0.14	226	0	0		138		196	0	0				G	41204801	-	G	41204800	7	5	61	1	0	1	1	0	0	0	0	0	4381	202	7	0	1360	0	DDX3X	23	41204800	Frame_Shift_Ins	INS	-	TCGA-2G-AAKO-01A-11D-A42Y-10	16976027	41204800	114065760	66	4304											
TEX13A	56157	mdanderson.org	37	chrX	104464815	104464815	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagccgtgcagccaccgcacCctgtgcctttgtagctgtgc	11	15	0	0	novel		TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_031274	exon2	c.G267A	p.R89R	CCGCACCCTGTGC		39	3	0.08	37	0	0				0	0					T	104464815	C	T	104464815	2	4	61	1	0	0	0	0	0	0	0	1	15834	622	22	3		3	TEX13A	23	104464815	Silent	SNP	C	TCGA-2G-AAKO-01A-11D-A42Y-10	63260015	104464815	50805745	67	4305											
HCFC1	3054	mdanderson.org	37	chrX	153223524	153223524	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctcttcaccagggtgatGgtcttggtgaccccgcccac	13	14	3	2	rs370251100	alternate_allele	TCGA-2G-AAKO-01A-11D-A42Y-10	TCGA-2G-AAKO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f5020af-426f-498a-8b86-56a7cbd58bc9	ca26dacd-984e-46b3-ad5e-671c3c639fbf	.	.	NM_005334	exon11	c.C1980A	p.T660T	GGTGATGGTCTTG		53	3	0.06	57	1	0.0175438596				64	0	0				T	153223524	G	T	153223524	2	4	61	1	0	0	0	0	0	0	0	1	7031	1335	47	3		3	HCFC1	23	153223524	Silent	SNP	G	TCGA-2G-AAKO-01A-11D-A42Y-10	48758709	153223524	2047036	68	4306											
TIE1	7075	broad.mit.edu	37	chr1	43779569	43779569	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcaccatcctggctgcccTtttaaccctggtgtgcatcc	7	17	1	0	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	TIE1	NM_005424	exon14	c.T2339C	p.L780P	CTGCCCTTTTAAC		117	3	0.03	66	0	0		132		67	0	0				C	43779569	T	C	43779569	3	2	62	1	0	0	0	0	1	0	0	0	15952	1609	56	4	2393	4	TIE1	1	43779569	Missense_Mutation	SNP	T	TCGA-2G-AAL5-01A-11D-A42Y-10		43779569	205471052	1	4307											
LRRC8B	23507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	90058405	90058405	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tggggaaaaatagcttgatgAatttgtcccctcatgtgggt	12	6	1	2	rs201504233		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_015350	exon6	c.A2215T	p.N739Y	TTGATGAATTTGT		138	32	0.23	70	0	0	0.001			26	8	0.31				T	90058405	A	T	90058405	3	4	62	1	0	0	0	0	1	0	0	0	9066	246	9	5	2221	5	LRRC8B	1	90058405	Missense_Mutation	SNP	A	TCGA-2G-AAL5-01A-11D-A42Y-10	46278836	90058405	159192216	2	4308											
FLAD1	80308	broad.mit.edu	37	chr1	154962054	154962054	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agggtcttctttggggaaaaAggtggcaggtgccctacaga	15	7	2	1	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	FLAD1,right_upper_lobe,carcinoma,0,1	FLAD1	NM_025207	exon3	c.A1136G	p.K379R	GGAAAAAGGTGGC		119	4	0.03	40	0	0		52	1	138	0	0				G	154962054	A	G	154962054	3	3	62	1	0	0	0	0	1	0	0	0	5952	72	3	4	1286	4	FLAD1	1	154962054	Missense_Mutation	SNP	A	TCGA-2G-AAL5-01A-11D-A42Y-10	64903649	154962054	94288567	3	4309											
ETV3	2117	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr1	157094985	157094985	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gctcctccttctctcgtgccGactgcctgaggctctcagga	10	16	2	1	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001145312	exon5	c.C1187T	p.S396L	CGTGCCGACTGCC		92	5	0.05	55	0	0				45	0	0				A	157094985	G	A	157094985	3	1	62	1	0	0	0	0	1	0	0	0	5307	1059	37	1	355	1	ETV3	1	157094985	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	2132931	157094985	92155636	4	4310											
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr1	176853487	176853487	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgctcacctgtctccacttTggagtggtccatcctgtcag	10	13	3	0	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_004319	exon19	c.A3214T	p.K1072X	CCACTTTGGAGTG		167	42	0.25	84	0	0				28	0	0				A	176853487	T	A	176853487	4	1	62	1	0	0	0	0	0	1	0	0	1063	1821	63	5	694	5	ASTN1	1	176853487	Nonsense_Mutation	SNP	T	TCGA-2G-AAL5-01A-11D-A42Y-10	19758502	176853487	72397134	5	4311											
PRG4	23572	bcgsc.ca	37	chr1	186276165	186276166	+	Missense_Mutation	DNP	CA	CA	TG													cccaaggagcctgcacccacCacccccaagaagcctgcccc					novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	CA	CA					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	PRG4	NM_005807	exon7	c.A1315G	p.T439A	ACCCACCACCCCC		76	8	0.11	51	0	0		259		6	0	0				TG	186276166	CA	TG	186276165	3	4	62	1	0	0	0	0	1	0	0	0	12532	581	21	3	1336	3	PRG4	1	186276165	Missense_Mutation	DNP	CA	TCGA-2G-AAL5-01A-11D-A42Y-10	9422678	186276165	62974456	6	4312											
SOX13	9580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	204092277	204092277	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatccccagccaaggagcGgctggaggacggctgtgtgc	15	13	1	0	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_005686	exon11	c.G1172T	p.R391L	AGGAGCGGCTGGA		137	82	0.6	98	0	0				112	58	0.52				T	204092277	G	T	204092277	3	4	62	1	0	0	0	0	1	0	0	0	14997	1116	39	1	1210	1	SOX13	1	204092277	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	17816112	204092277	45158344	7	4313											
MERTK	10461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	112760766	112760766	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaaattctgggtgaaggTaagcaatttaaagtaattct	10	3	2	1	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_006343	exon12	c.1786+2T>C	.	TGAAGGTAAGCAA		160	42	0.26	114	0	0				6	0	0				C	112760766	T	C	112760766	5	2	62	1	0	0	0	0	0	0	1	0	9528	1652	57	4	1834	4	MERTK	2	112760766	Splice_Site	SNP	T	TCGA-2G-AAL5-01A-11D-A42Y-10		112760766	130438607	8	4314											
NFE2L2	4780	bcgsc.ca	37	chr2	178129282	178129282	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgggacgggagtcccggcGgcggcagctccaagtccatc	16	14	0	0	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	NFE2L2	NM_006164	exon1	c.C23A	p.P8Q	CCCGGCGGCGGCA		65	4	0.06	61	0	0		225		39	0	0				T	178129282	G	T	178129282	3	4	62	1	0	0	0	0	1	0	0	0	10414	1116	39	1	1814	1	NFE2L2	2	178129282	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	65368516	178129282	65070091	9	4315											
NEU4	129807	mdanderson.org	37	chr2	242757880	242757880	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acgaacccccagaggaggctGctgtagacccccgtggaggc	14	14	0	2	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001167599	exon4	c.G1000A	p.A334T	GAGGCTGCTGTAG		31	3	0.1	33	0	0				1	0	0				A	242757880	G	A	242757880	3	1	62	1	0	0	0	0	1	0	0	0	10390	1319	46	2	1014	2	NEU4	2	242757880	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	64628598	242757880	441493	10	4316											
SCN10A	6336	mdanderson.org	37	chr3	38805080	38805080	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acggagatctattgctgtgcCaacatatctgtaggaccaga	10	9	2	2	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_006514	exon5	c.G607T	p.G203C	CTGTGCCAACATA		22	2	0.09	23	0	0				0	0					A	38805080	C	A	38805080	3	1	62	1	0	0	0	0	1	0	0	0	13965	594	21	3	5355	3	SCN10A	3	38805080	Missense_Mutation	SNP	C	TCGA-2G-AAL5-01A-11D-A42Y-10		38805080	159217350	11	4317											
GNL3	26354	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	52721395	52721396	+	Frame_Shift_Del	DEL	AG	AG	-													ggaagctgagctaaggaaacAgagggtaagttatgttagcc					novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	AG	AG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.,1	GNL3	NM_014366	exon3	c.205_206del	p.69_69del	GGAAACAGAGGGT		230	66	0.29	183	0	0		37		291	0	0				-	52721396	AG	-	52721395	7	5	62	1	0	1	0	1	0	0	0	0	6578	188	7	0	216	0	GNL3	3	52721395	Frame_Shift_Del	DEL	AG	TCGA-2G-AAL5-01A-11D-A42Y-10	13916315	52721395	145301035	12	4318											
SEMA5B	54437	broad.mit.edu;mdanderson.org	37	chr3	122631795	122631795	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacgttctcttgcggacgcGgaagcccagctcgcagtccc	12	16	1	0	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	SEMA5B	NM_001256347	exon18	c.C2782T	p.R928C	GGACGCGGAAGCC		104	28	0.27	77	0	0		303		57	17	0.3				A	122631795	G	A	122631795	3	1	62	1	0	0	0	0	1	0	0	0	14091	1116	39	1	859	1	SEMA5B	3	122631795	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	69910400	122631795	75390635	13	4319											
MUC4	4585	mdanderson.org	37	chr3	195511417	195511417	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtggcgtgacctgtggatGctgaggaagggctagtgaca	19	6	0	3	rs74839766	bycluster;byfrequency	TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_018406	exon2	c.C7034T	p.A2345V	GTGGATGCTGAGG		98	6	0.06	82	3	0.0365853659	0.008			0	0					A	195511417	G	A	195511417	3	1	62	1	0	0	0	0	1	0	0	0	10025	1319	46	2		2	MUC4	3	195511417	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	72879622	195511417	2511013	14	4320											
ANKH	56172	mdanderson.org	37	chr5	14746005	14746005	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagcaggatacacagcacGgatttccgtcaaccagccgt	10	12	1	0	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_054027	exon7	c.C889A	p.R297S	CAGCACGGATTTC		52	3	0.06	61	0	0				31	0	0				T	14746005	G	T	14746005	3	4	62	1	0	0	0	0	1	0	0	0	623	1116	39	1	613	1	ANKH	5	14746005	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10		14746005	166169255	15	4321											
FTMT	94033	mdanderson.org	37	chr5	121187745	121187745	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctgctgcttcgcgctcccGctgcgttgggccccggggcg	16	17	0	0	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_177478	exon1	c.G87T	p.P29P	GCTCCCGCTGCGT		17	3	0.18	15	0	0				0	0					T	121187745	G	T	121187745	2	4	62	1	0	0	0	0	0	0	0	1	6119	1074	38	1		1	FTMT	5	121187745	Silent	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	106441740	121187745	59727515	16	4322											
TCOF1	6949	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	149767638	149767638	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacgtgatccccgctacacaGtgcttgactcctggtgagcg	12	13	0	3	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001135243	exon18	c.G3033A	p.Q1011Q	TACACAGTGCTTG		156	7	0.04	155	0	0				116	10	0.09				A	149767638	G	A	149767638	2	1	62	1	0	0	0	0	0	0	0	1	15767	1020	36	3		3	TCOF1	5	149767638	Silent	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	28579893	149767638	31147622	17	4323											
DSP	1832	bcgsc.ca	37	chr6	7583862	7583862	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgatagagaaaccggaatgCgcctgctggaagcccagatt	12	9	0	3	rs372242085		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	DSP,colon,carcinoma,0,1	DSP	NM_004415	exon24	c.C6367T	p.R2123C	GGAATGCGCCTGC		47	4	0.09	42	0	0		306	1	98	0	0				T	7583862	C	T	7583862	3	4	62	1	0	0	0	0	1	0	0	0	4807	768	27	1	6461	1	DSP	6	7583862	Missense_Mutation	SNP	C	TCGA-2G-AAL5-01A-11D-A42Y-10		7583862	163531205	18	4324											
SPACA1	81833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	88757823	88757823	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactacgctccgcctgaaaCcgaggatggtgagggcggga	16	10	0	2	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_030960	exon1	c.C200A	p.T67N	CTGAAACCGAGGA		107	31	0.29	96	0	0				0	0					A	88757823	C	A	88757823	3	1	62	1	0	0	0	0	1	0	0	0	15025	507	18	3	202	3	SPACA1	6	88757823	Missense_Mutation	SNP	C	TCGA-2G-AAL5-01A-11D-A42Y-10	81173961	88757823	82357244	19	4325											
CHST12	55501	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr7	2472936	2472936	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccttcaacaagttctggcGccgctacgggaagctctccc	10	15	3	0	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	CHST12	NM_018641	exon2	c.G662T	p.R221L	TCTGGCGCCGCTA		42	4	0.1	28	0	0		39		62	0	0				T	2472936	G	T	2472936	3	4	62	1	0	0	0	0	1	0	0	0	3422	1087	38	1	664	1	CHST12	7	2472936	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10		2472936	156665727	20	4326											
FAM126A	84668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	23016321	23016321	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacagtataccgattctgtGctgtcagcatctccctttga	7	13	3	1	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_032581	exon6	c.C521T	p.A174V	TTCTGTGCTGTCA		113	29	0.26	81	0	0				9	4	0.44				A	23016321	G	A	23016321	3	1	62	1	0	0	0	0	1	0	0	0	5460	1319	46	2	1068	2	FAM126A	7	23016321	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	20543385	23016321	136122342	21	4327											
MUC17	140453	mdanderson.org	37	chr7	100679429	100679429	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagcactccactaacaagtTtgcctgtcagcaccatgctg	8	13	1	0	rs140211003	alternate_allele	TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001040105	exon3	c.T4732A	p.L1578M	ACAAGTTTGCCTG		119	10	0.08	81	1	0.012345679				0	0					A	100679429	T	A	100679429	3	1	62	1	0	0	0	0	1	0	0	0	10021	1838	64	5	4742	5	MUC17	7	100679429	Missense_Mutation	SNP	T	TCGA-2G-AAL5-01A-11D-A42Y-10	77663108	100679429	58459234	22	4328											
ZNF425	155054	broad.mit.edu;bcgsc.ca	37	chr7	148801009	148801009	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgaatgtgttctgtgagccGgtactgttgagtgaaacttt	12	6	1	3	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	ZNF425	NM_001001661	exon4	c.C1954T	p.R652W	TGAGCCGGTACTG		105	5	0.05	81	0	0		99		21	0	0				A	148801009	G	A	148801009	3	1	62	1	0	0	0	0	1	0	0	0	17955	1115	39	1	308	1	ZNF425	7	148801009	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	48121580	148801009	10337654	23	4329											
SSPO	23145	mdanderson.org	37	chr7	149474749	149474749	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggcaggggctgtgggccAgctctggagccagcaccagc	16	14	1	0	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_198455	exon5	c.A548G	p.Q183R	TGGGCCAGCTCTG		28	3	0.11	21	0	0				4	0	0				G	149474749	A	G	149474749	3	3	62	1	0	0	0	0	1	0	0	0	15244	188	7	4	566	4	SSPO	7	149474749	Missense_Mutation	SNP	A	TCGA-2G-AAL5-01A-11D-A42Y-10	673740	149474749	9663914	24	4330											
FASTK	10922	mdanderson.org	37	chr7	150774452	150774452	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtatttctcctcccccagCagctggcgcaacccctcagc	8	19	2	0	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_006712	exon7	c.G1236T	p.L412L	CCCCAGCAGCTGG		32	3	0.09	32	0	0				543	0	0				A	150774452	C	A	150774452	2	1	62	1	0	0	0	0	0	0	0	1	5716	697	25	2		2	FASTK	7	150774452	Silent	SNP	C	TCGA-2G-AAL5-01A-11D-A42Y-10	1299703	150774452	8364211	25	4331											
MTERFD1	51001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	97263294	97263294	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aaggaggtttgctgcttctgGatgtttttctatcttggaca	11	6	3	0	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_015942	exon4	c.C517T	p.P173S	CTTCTGGATGTTT		52	14	0.27	38	0	0				132	39	0.3				A	97263294	G	A	97263294	3	1	62	1	0	0	0	0	1	0	0	0	9966	1174	41	3	756	3	MTERFD1	8	97263294	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10		97263294	49100728	26	4332											
CPSF1	29894	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	145623257	145623257	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaacatggtgacgtggcccTcggcactcatgatgaccaca	12	12	1	3	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	CPSF1	NM_013291	exon20	c.A1985G	p.E662G	TGGCCCTCGGCAC		49	5	0.1	48	0	0		92		201	6	0.03				C	145623257	T	C	145623257	3	2	62	1	0	0	0	0	1	0	0	0	3847	1551	54	4	2422	4	CPSF1	8	145623257	Missense_Mutation	SNP	T	TCGA-2G-AAL5-01A-11D-A42Y-10	48359963	145623257	740765	27	4333											
ARHGAP39	80728	mdanderson.org	37	chr8	145830968	145830968	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggcaggtcgacattatggCtcctgcactcgtagtcctgc	11	14	0	0	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_025251	exon3	c.G32A	p.S11N	TTATGGCTCCTGC		41	3	0.07	40	0	0				17	0	0				T	145830968	C	T	145830968	3	4	62	1	0	0	0	0	1	0	0	0	881	797	28	2	3356	2	ARHGAP39	8	145830968	Missense_Mutation	SNP	C	TCGA-2G-AAL5-01A-11D-A42Y-10	207711	145830968	533054	28	4334											
KANK1	23189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	745199	745199	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctaggcttggaaggaagacGtctcctggccccacccaccg	11	16	1	1	rs148157700		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	KANK1_ENST00000382303,NS,carcinoma,0,2	KANK1_ENST00000382303	NM_001256876	exon16	c.G4023A	p.T1341T	GAAGACGTCTCCT		124	54	0.44	158	0	0	0	0	2	49	24	0.49				A	745199	G	A	745199	2	1	62	1	0	0	0	0	0	0	0	1	8019	1132	40	1		1	KANK1	9	745199	Silent	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10		745199	140468232	29	4335											
GNAQ	2776	mdanderson.org	37	chr9	80430537	80430537	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaagatactcactatttGgtagagtcagataattgata	9	4	2	4	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_002072	exon3	c.C471A	p.T157T	CTATTTGGTAGAG		48	3	0.06	62	0	0				17	0	0				T	80430537	G	T	80430537	2	4	62	1	0	0	0	0	0	0	0	1	6550	1335	47	3		3	GNAQ	9	80430537	Silent	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	79685338	80430537	60782894	30	4336											
C9orf47	286223	mdanderson.org	37	chr9	91606483	91606483	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccccaggcccgggaacgaCgtcgcgagcgctgagactgc	15	15	0	1	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001001938	exon2	c.C345T	p.D115D	GAACGACGTCGCG		15	2	0.13	14	0	0				10	0	0				T	91606483	C	T	91606483	2	4	62	1	0	0	0	0	0	0	0	1	2503	535	19	1		1	C9orf47	9	91606483	Silent	SNP	C	TCGA-2G-AAL5-01A-11D-A42Y-10	11175946	91606483	49606948	31	4337											
NEK6	10783	broad.mit.edu	37	chr9	127089658	127089658	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcacagccacgggcgtcGtgaagctcggtgaccttggt	13	12	2	2	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	NEK6,NS,carcinoma,0,1	NEK6	NM_001166171	exon8	c.G658T	p.V220L	GGCGTCGTGAAGC		62	3	0.05	64	0	0		47	1	78	0	0				T	127089658	G	T	127089658	3	4	62	1	0	0	0	0	1	0	0	0	10374	1145	40	1	763	1	NEK6	9	127089658	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	35483175	127089658	14123773	32	4338											
COL5A1	1289	mdanderson.org	37	chr9	137593103	137593103	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccaccaaattcctcgaccGcagcgaccaccccatgatcg	7	18	0	1	rs142933609	bycluster;by1000genomes	TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	COL5A1,bladder,carcinoma,+1,3	COL5A1	NM_000093	exon4	c.G578A	p.R193H	TCGACCGCAGCGA		68	4	0.06	77	0	0	0	1	3	203	0	0				A	137593103	G	A	137593103	3	1	62	1	0	0	0	0	1	0	0	0	3719	1087	38	1	592	1	COL5A1	9	137593103	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	10503445	137593103	3620328	33	4339											
CARD9	64170	mdanderson.org	37	chr9	139262259	139262259	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgggcgtgctgtgcgtgcaGctcctcccgcgtggctatgg	16	14	0	0	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_052813	exon8	c.C1099A	p.L367M	CGTGCAGCTCCTC		24	3	0.13	12	0	0				9	0	0				T	139262259	G	T	139262259	3	4	62	1	0	0	0	0	1	0	0	0	2670	962	34	2	588	2	CARD9	9	139262259	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	1669156	139262259	1951172	34	4340											
ZNF503	84858	mdanderson.org	37	chr10	77159542	77159542	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcccagagccttgcctccCgggcccccatccggatgctg	12	18	0	1	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_032772	exon2	c.G906A	p.P302P	GCCTCCCGGGCCC		18	2	0.11	25	0	0				150	0	0				T	77159542	C	T	77159542	2	4	62	1	0	0	0	0	0	0	0	1	18007	639	23	1		1	ZNF503	10	77159542	Silent	SNP	C	TCGA-2G-AAL5-01A-11D-A42Y-10		77159542	58375205	35	4341											
CRTAC1	55118	mdanderson.org	37	chr10	99655016	99655016	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actcacccaggccaaagtgtGccacgggctccatctcacac	8	17	2	0	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001206528	exon11	c.C1472A	p.A491E	AAGTGTGCCACGG		31	3	0.1	23	0	0				14	0	0				T	99655016	G	T	99655016	3	4	62	1	0	0	0	0	1	0	0	0	3919	1319	46	2	533	2	CRTAC1	10	99655016	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	22495474	99655016	35879731	36	4342											
MMP21	118856	mdanderson.org	37	chr10	127461212	127461212	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gatgcccgtgtcactggtggGaggtgtgaagtgctcgtcgt	17	8	1	1	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_147191	exon3	c.C805A	p.P269T	TGGTGGGAGGTGT		110	5	0.05	87	0	0				0	0					T	127461212	G	T	127461212	3	4	62	1	0	0	0	0	1	0	0	0	9707	1174	41	3	924	3	MMP21	10	127461212	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	27806196	127461212	8073535	37	4343											
ATG2A	23130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	64662855	64662855	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcgcagagcgcttatcctgCagggagcgggagacgggggc	19	11	0	2	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_015104	exon40	c.G5487T	p.L1829L	ATCCTGCAGGGAG		62	27	0.44	55	0	0				85	38	0.45				A	64662855	C	A	64662855	2	1	62	1	0	0	0	0	0	0	0	1	1092	697	25	2		2	ATG2A	11	64662855	Silent	SNP	C	TCGA-2G-AAL5-01A-11D-A42Y-10		64662855	70343661	38	4344											
CLPB	81570	mdanderson.org	37	chr11	72145171	72145171	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accagcgctgcggccagggcGcacatgcccagtccggccct	13	18	0	0	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001258394	exon1	c.C106T	p.R36C	CAGGGCGCACATG		21	2	0.1	29	0	0				28	0	0				A	72145171	G	A	72145171	3	1	62	1	0	0	0	0	1	0	0	0	3574	1079	38	1	1843	1	CLPB	11	72145171	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	7482316	72145171	62861345	39	4345											
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	99715691	99715691	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	attgtgaagttcgtggcaatCcagttcccagttacaggtag	11	8	0	1	rs201512506		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001243270	exon4	c.C385T	p.P129S	GGCAATCCAGTTC		126	27	0.21	94	0	0				0	0					T	99715691	C	T	99715691	3	4	62	1	0	0	0	0	1	0	0	0	3667	855	30	3	395	3	CNTN5	11	99715691	Missense_Mutation	SNP	C	TCGA-2G-AAL5-01A-11D-A42Y-10	27570520	99715691	35290825	40	4346											
PGR	5241	mdanderson.org	37	chr11	100999245	100999245	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctggtgacaggccccggGgcagcactttatgggcagct	17	11	0	1	rs11571145	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	PGR,NS,carcinoma,0,1	PGR	NM_000926	exon1	c.C557A	p.P186H	CCCCGGGGCAGCA		22	2	0.09	16	0	0		0	1	0	0					T	100999245	G	T	100999245	3	4	62	1	0	0	0	0	1	0	0	0	11852	1232	43	3	2276	3	PGR	11	100999245	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	1283554	100999245	34007271	41	4347											
SCNN1A	0	broad.mit.edu	37	chr12	6457129	6457129	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agggtggcataggcagggggAggggctgtcaaggctggaga	22	5	1	1	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	SCNN1A	NM_001159576	exon12	c.T2097C	p.P699P	AGGGGGAGGGGCT		247	10	0.04	75	2	0.0266666667		54		121	0	0				G	6457129	A	G	6457129	2	3	62	1	0	0	0	0	0	0	0	1	13980	291	11	4		4	SCNN1A	12	6457129	Silent	SNP	A	TCGA-2G-AAL5-01A-11D-A42Y-10		6457129	127394766	42	4348											
KRT85	3891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	52758951	52758951	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttctgctgctccaggaagcGcacctgccattcaggtggaa	12	12	2	0	rs148274330		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_002283	exon2	c.C424T	p.R142C	GGAAGCGCACCTG		92	17	0.18	65	0	0				0	0					A	52758951	G	A	52758951	3	1	62	1	0	0	0	0	1	0	0	0	8541	1087	38	1	1131	1	KRT85	12	52758951	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	46301822	52758951	81092944	43	4349											
C12orf52	84934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	113629502	113629502	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggatctcaggccttccacGtcaggggtgaccttccggag	13	13	2	1	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_032848	exon4	c.G690A	p.T230T	TTCCACGTCAGGG		111	30	0.27	68	0	0				104	43	0.41				A	113629502	G	A	113629502	2	1	62	1	0	0	0	0	0	0	0	1	1703	1132	40	1		1	C12orf52	12	113629502	Silent	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	60870551	113629502	20222393	44	4350											
GLT1D1	144423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	129467613	129467613	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaacagctcatcaggaagcTggaaggaagcactgaagatt	11	9	2	2	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_144669	exon8	c.T779C	p.L260P	GGAAGCTGGAAGG		62	20	0.32	49	0	0				19	1	0.05				C	129467613	T	C	129467613	3	2	62	1	0	0	0	0	1	0	0	0	6506	1580	55	4	809	4	GLT1D1	12	129467613	Missense_Mutation	SNP	T	TCGA-2G-AAL5-01A-11D-A42Y-10	15838111	129467613	4384282	45	4351											
ULK1	8408	mdanderson.org	37	chr12	132401102	132401102	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccgttgggccctggcctgCggccaggcgaggaccccaag	16	15	0	0	rs147399196	bycluster;byfrequency;by1000genomes	TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_003565	exon20	c.C2038T	p.R680W	GGCCTGCGGCCAG		48	3	0.06	28	0	0	0.001			146	0	0				T	132401102	C	T	132401102	3	4	62	1	0	0	0	0	1	0	0	0	17034	759	27	1	2116	1	ULK1	12	132401102	Missense_Mutation	SNP	C	TCGA-2G-AAL5-01A-11D-A42Y-10	2933489	132401102	1450793	46	4352											
AKAP11	11215	hgsc.bcm.edu	37	chr13	42876257	42876257	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttaactaaaaagctcaaGggagaattagccaaagagtt	9	5	1	2	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_016248	exon8	c.G3375T	p.K1125N	GCTCAAGGGAGAA		91	4	0.04	136	0	0				5	0	0				T	42876257	G	T	42876257	3	4	62	1	0	0	0	0	1	0	0	0	444	991	35	3	3397	3	AKAP11	13	42876257	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10		42876257	72293621	47	4353											
MYCBP2	23077	mdanderson.org	37	chr13	77672103	77672103	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttataggagcatgttctttGgaaagttcaggatgaaactt	10	5	2	1	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	MYCBP2_ENST00000407578,NS,NS,-1,15	MYCBP2_ENST00000407578	NM_015057	exon56	c.C9186A	p.S3062S	TTCTTTGGAAAGT		40	4	0.1	55	0	0		-1	15	10	0	0				T	77672103	G	T	77672103	2	4	62	1	0	0	0	0	0	0	0	1	10065	1335	47	3		3	MYCBP2	13	77672103	Silent	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	34795846	77672103	37497775	48	4354											
FOS	2353	mdanderson.org	37	chr14	75748069	75748069	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgcccaccgcaagggcaGcagcagcaatgagccttcct	11	15	0	1	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_005252	exon4	c.G1085T	p.S362I	AGGGCAGCAGCAG		32	3	0.09	30	0	0				209	0	0				T	75748069	G	T	75748069	3	4	62	1	0	0	0	0	1	0	0	0	6017	971	34	2	1099	2	FOS	14	75748069	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10		75748069	31601471	49	4355											
PLA2G4D	283748	mdanderson.org	37	chr15	42362251	42362251	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggttccacccgggggaaggGcagcccccgggcccggcagt	18	15	0	0	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_178034	exon19	c.C2086T	p.P696S	GGAAGGGCAGCCC		25	3	0.12	30	0	0				1	0	0				A	42362251	G	A	42362251	3	1	62	1	0	0	0	0	1	0	0	0	12051	1203	42	2	378	2	PLA2G4D	15	42362251	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10		42362251	60169141	50	4356											
PKD1	5310	mdanderson.org	37	chr16	2153892	2153892	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctggccaggtggatgagGtctcctgcagacatgcgtga	16	9	1	3	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001009944	exon23	c.C8166A	p.D2722E	GATGAGGTCTCCT		15	2	0.13	15	0	0				45	0	0				T	2153892	G	T	2153892	3	4	62	1	0	0	0	0	1	0	0	0	12010	1252	44	3	4841	3	PKD1	16	2153892	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10		2153892	88200861	51	4357											
ATP6V0D1	9114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	67473035	67473035	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatggtgatgatgaaggcgcGgcggtctgcttcaaactgtg	16	7	2	3	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_004691	exon6	c.C655T	p.R219C	AGGCGCGGCGGTC		47	21	0.45	40	0	0				384	172	0.45				A	67473035	G	A	67473035	3	1	62	1	0	0	0	0	1	0	0	0	1171	1116	39	1	412	1	ATP6V0D1	16	67473035	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	65319143	67473035	22881718	52	4358											
PAFAH1B1	5048	bcgsc.ca	37	chr17	2585079	2585080	+	Frame_Shift_Del	DEL	GT	GT	-													gcgtagatcaaacagtaaaaGtgtgggagtgccgttgattg					novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	GT	GT					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	PAFAH1B1	NM_000430	exon11	c.1216_1217del	p.406_406del	GTAAAAGTGTGGG		141	47	0.33	85	0	0		26		224	0	0				-	2585080	GT	-	2585079	7	5	62	1	0	1	0	1	0	0	0	0	11430	1029	36	0	1254	0	PAFAH1B1	17	2585079	Frame_Shift_Del	DEL	GT	TCGA-2G-AAL5-01A-11D-A42Y-10		2585079	78610131	53	4359											
USP6	9098	broad.mit.edu	37	chr17	5050419	5050419	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagtacaactctcagtgagCggatttttgtgtgcatttga	10	6	1	2	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	USP6	NM_004505	exon21	c.C2361A	p.S787R	AGTGAGCGGATTT		229	5	0.02	156	0	0		213		0	0					A	5050419	C	A	5050419	3	1	62	1	0	0	0	0	1	0	0	0	17145	767	27	1	2439	1	USP6	17	5050419	Missense_Mutation	SNP	C	TCGA-2G-AAL5-01A-11D-A42Y-10	2465340	5050419	76144791	54	4360											
MAP3K3	4215	hgsc.bcm.edu;mdanderson.org	37	chr17	61767648	61767648	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgcccccatcaactggcGccggggaaagctcctgggcc	13	16	1	0	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	MAP3K3,NS,carcinoma,0,2	MAP3K3	NM_203351	exon13	c.G1181T	p.R394L	ACTGGCGCCGGGG		48	3	0.06	44	0	0		0	2	54	0	0				T	61767648	G	T	61767648	3	4	62	1	0	0	0	0	1	0	0	0	9300	1087	38	1	1231	1	MAP3K3	17	61767648	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	56717229	61767648	19427562	55	4361											
LRRC45	201255	mdanderson.org	37	chr17	79988001	79988001	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcgcaggcacgggacgagGcgcagggcgcttgcctacag	18	12	0	0	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_144999	exon15	c.G1555T	p.A519S	GACGAGGCGCAGG		25	3	0.12	22	0	0				115	0	0				T	79988001	G	T	79988001	3	4	62	1	0	0	0	0	1	0	0	0	9046	1203	42	2	1613	2	LRRC45	17	79988001	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	18220353	79988001	1207209	56	4362											
RAB12	201475	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr18	8609900	8609900	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgtgggcaagaccagcctgAtggagcgcttcaccgacgac	14	13	1	2	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001025300	exon1	c.A175T	p.M59L	AGCCTGATGGAGC		101	48	0.48	120	0	0				40	16	0.4				T	8609900	A	T	8609900	3	4	62	1	0	0	0	0	1	0	0	0	12949	333	12	5	177	5	RAB12	18	8609900	Missense_Mutation	SNP	A	TCGA-2G-AAL5-01A-11D-A42Y-10		8609900	69467348	57	4363											
OSBPL1A	114876	mdanderson.org	37	chr18	21914216	21914216	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtttgttttaccagagctGtgagttctgttgttttgcct	10	6	1	2	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_080597	exon6	c.C473A	p.T158K	AGAGCTGTGAGTT		42	3	0.07	65	0	0				6	0	0				T	21914216	G	T	21914216	3	4	62	1	0	0	0	0	1	0	0	0	11323	1377	48	3	2471	3	OSBPL1A	18	21914216	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	13304316	21914216	56163032	58	4364											
SAFB	6294	broad.mit.edu	37	chr19	5667167	5667167	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagggccgggggctgcctccTccccccaggtttgtgtccca	14	16	0	0	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	SAFB	NM_002967	exon18	c.T2445C	p.P815P	GCCTCCTCCCCCC		145	27	0.19	85	12	0.1411764706		74		849	0	0				C	5667167	T	C	5667167	2	2	62	1	0	0	0	0	0	0	0	1	13857	1538	54	4		4	SAFB	19	5667167	Silent	SNP	T	TCGA-2G-AAL5-01A-11D-A42Y-10		5667167	53461816	59	4365											
DNM2	1785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	10908073	10908073	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	caggacggggctcttcacccCcgacatggcctttgaagcca	11	15	2	1	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001005361	exon10	c.C1214G	p.P405R	TCACCCCCGACAT		63	17	0.27	36	0	0				80	27	0.34				G	10908073	C	G	10908073	3	3	62	1	0	0	0	0	1	0	0	0	4699	623	22	5	1395	5	DNM2	19	10908073	Missense_Mutation	SNP	C	TCGA-2G-AAL5-01A-11D-A42Y-10	5240906	10908073	48220910	60	4366											
ANKLE1	126549	broad.mit.edu	37	chr19	17397492	17397501	+	Frame_Shift_Del	DEL	TGTGTGTGTT	TGTGTGTGTT	-													tgtgtgtgtgtgtgtgtgtgTgtgtgtgtttgtgtgtgtgt					rs35771129	alternate_allele	TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	TGTGTGTGTT	TGTGTGTGTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	ANKLE1	.	.	.	.	TGTGTGTGTGTGT		11	7	0.64	6	0	0		27		5	0	0				-	17397501	TGTGTGTGTT	-	17397492	7	5	62	1	0	1	0	1	0	0	0	0	628	1711	59	0		0	ANKLE1	19	17397492	Frame_Shift_Del	DEL	TGTGTGTGTT	TCGA-2G-AAL5-01A-11D-A42Y-10	6489419	17397492	41731491	61	4367											
TMEM161A	54929	mdanderson.org	37	chr19	19232599	19232599	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccctgcttcttcagaagtgGctctaagttctgggtcatgc	11	11	5	1	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_017814	exon7	c.C625T	p.P209S	GAAGTGGCTCTAA		42	3	0.07	42	0	0				117	0	0				A	19232599	G	A	19232599	3	1	62	1	0	0	0	0	1	0	0	0	16135	1203	42	2	838	2	TMEM161A	19	19232599	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	1835107	19232599	39896384	62	4368											
ZNF565	147929	broad.mit.edu;bcgsc.ca	37	chr19	36673726	36673728	+	In_Frame_Del	DEL	TGT	TGT	-													cgccagtatggactctctgaTgtcgtgtgagctgtgcgtgc					novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	TGT	TGT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	ZNF565	NM_001042474	exon5	c.1140_1142del	p.380_381del	CTCTGATGTCGTG		69	17	0.25	58	0	0		46		39	0	0				-	36673728	TGT	-	36673726	7	5	62	1	0	1	0	1	0	0	0	0	18052	1464	51	0	361	0	ZNF565	19	36673726	In_Frame_Del	DEL	TGT	TCGA-2G-AAL5-01A-11D-A42Y-10	17441127	36673726	22455257	63	4369	9	2									
ZNF565	147929	broad.mit.edu;bcgsc.ca	37	chr19	36673730	36673734	+	Frame_Shift_Del	DEL	GTGTG	GTGTG	-													agtatggactctctgatgtcGtgtgagctgtgcgtgctgtc					novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	GTGTG	GTGTG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	ZNF565	NM_001042474	exon5	c.1134_1138del	p.378_380del	GATGTCGTGTGAG		67	17	0.25	60	0	0		46		32	0	0				-	36673734	GTGTG	-	36673730	7	5	62	1	0	1	0	1	0	0	0	0	18052	1153	40	0	365	0	ZNF565	19	36673730	Frame_Shift_Del	DEL	GTGTG	TCGA-2G-AAL5-01A-11D-A42Y-10	4	36673730	22455253	64	4370	9	2									
PNMAL2	57469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr19	46997528	46997528	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccttgcgcaggaccacggCgtccacctcgcggcccgcct	13	19	0	0	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_020709	exon1	c.G1195A	p.A399T	CCACGGCGTCCAC		35	9	0.26	27	0	0				15	3	0.2				T	46997528	C	T	46997528	3	4	62	1	0	0	0	0	1	0	0	0	12205	768	27	1	716	1	PNMAL2	19	46997528	Missense_Mutation	SNP	C	TCGA-2G-AAL5-01A-11D-A42Y-10	10323798	46997528	12131455	65	4371											
LAMA5	3911	broad.mit.edu;mdanderson.org	37	chr20	60887507	60887507	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cctgtcgtgttcagccgcttGaggtccacatacttgcccag	10	14	1	1	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	LAMA5	NM_005560	exon68	c.C9309T	p.L3103L	CCGCTTGAGGTCC		8	4	0.5	9	0	0		268		279	131	0.47				A	60887507	G	A	60887507	2	1	62	1	0	0	0	0	0	0	0	1	8647	1277	45	3		3	LAMA5	20	60887507	Silent	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10		60887507	2138013	66	4372											
MX2	4600	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr21	42767524	42767524	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	catctcacaggtatcctgacCaaaccagatctaatggacag	7	12	2	2	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	MX2	NM_002463	exon7	c.C882A	p.T294T	CCTGACCAAACCA		243	9	0.04	193	0	0		84		10	0	0				A	42767524	C	A	42767524	2	1	62	1	0	0	0	0	0	0	0	1	10045	581	21	3		3	MX2	21	42767524	Silent	SNP	C	TCGA-2G-AAL5-01A-11D-A42Y-10		42767524	5362371	67	4373											
RBM10	8241	broad.mit.edu	37	chrX	47030582	47030582	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggaggaggaggaggaGgatgaggaggaggaggagaa	25	0	0	2	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	RBM10	NM_001204468	exon4	c.G552T	p.E184D	GGAGGAGGATGAG		77	4	0.05	46	0	0		117		14	0	0				T	47030582	G	T	47030582	3	4	62	1	0	0	0	0	1	0	0	0	13162	991	35	3	367	3	RBM10	23	47030582	Missense_Mutation	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10		47030582	108239978	68	4374											
NUDT10	170685	broad.mit.edu	37	chrX	51076024	51076024	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccgagaggtgtacgaagaGgcgggagtcaaggggaagtt	19	5	1	2	rs2801626		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	NUDT10	NM_153183	exon2	c.G207A	p.E69E	CGAAGAGGCGGGA		256	6	0.02	148	2	0.0135135135		28		47	0	0				A	51076024	G	A	51076024	2	1	62	1	0	0	0	0	0	0	0	1	10773	991	35	3		3	NUDT10	23	51076024	Silent	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	4045442	51076024	104194536	69	4375											
HMGB3	3149	mdanderson.org	37	chrX	150156360	150156360	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagaggaggaggaagaagaGgaggaggaggaggaggagga	24	0	0	3	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_005342	exon5	c.G576A	p.E192E	AGAAGAGGAGGAG		16	2	0.13	10	0	0				164	2	0.01				A	150156360	G	A	150156360	2	1	62	1	0	0	0	0	0	0	0	1	7267	991	35	3		3	HMGB3	23	150156360	Silent	SNP	G	TCGA-2G-AAL5-01A-11D-A42Y-10	99080336	150156360	5114200	70	4376											
FLNA	2316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	153583390	153583390	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctgccgccttagtgtccaCagtgatcaccgtctcctccc	8	18	2	1	novel		TCGA-2G-AAL5-01A-11D-A42Y-10	TCGA-2G-AAL5-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	171689da-01a4-40f0-81f1-2e31c2e22def	89d0a1e3-1b77-413f-aa1f-f31cc665e959	.	.	NM_001110556	exon31	c.G5020C	p.V1674L	TGTCCACAGTGAT		118	53	0.45	90	0	0				1418	652	0.46				G	153583390	C	G	153583390	3	3	62	1	0	0	0	0	1	0	0	0	5965	478	17	5	2995	5	FLNA	23	153583390	Missense_Mutation	SNP	C	TCGA-2G-AAL5-01A-11D-A42Y-10	3427030	153583390	1687170	71	4377											
LYPLA2	11313	mdanderson.org	37	chr1	24120782	24120782	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggcatcgtggcgttgagCtgctggctgcctctgcaccg	15	13	1	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_007260	exon8	c.C438T	p.S146S	GTTGAGCTGCTGG		30	3	0.1	31	0	0				216	0	0				T	24120782	C	T	24120782	2	4	63	1	0	0	0	0	0	0	0	1	9162	796	28	2		2	LYPLA2	1	24120782	Silent	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10		24120782	225129839	1	4378											
TACSTD2	4070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	59042191	59042191	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgatatccacgtcaccggcgGccttctgagacgtgttctgc	11	14	3	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_002353	exon1	c.C638T	p.A213V	CCGGCGGCCTTCT		126	32	0.25	78	0	0				10	1	0.1				A	59042191	G	A	59042191	3	1	63	1	0	0	0	0	1	0	0	0	15564	1203	42	2	337	2	TACSTD2	1	59042191	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	34921409	59042191	190208430	2	4379											
CHRNB2	1141	mdanderson.org	37	chr1	154544408	154544408	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggcgacgccagcgtgagcGcgagggcgctggagccctct	18	14	1	1	rs200483865	alternate_allele	TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_000748	exon5	c.G1109T	p.R370L	GTGAGCGCGAGGG		15	3	0.2	16	0	0				0	0					T	154544408	G	T	154544408	3	4	63	1	0	0	0	0	1	0	0	0	3413	1087	38	1	1127	1	CHRNB2	1	154544408	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	95502217	154544408	94706213	3	4380											
ATP1A2	477	mdanderson.org	37	chr1	160109764	160109764	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaaagctcatcctgcggcgGtatcctggtggtaagcccct	12	13	1	0	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	ATP1A2,NS,carcinoma,+2,3	ATP1A2	NM_000702	exon22	c.G3024T	p.R1008R	GCGGCGGTATCCT		49	3	0.06	55	2	0.0363636364		2	3	3	0	0				T	160109764	G	T	160109764	2	4	63	1	0	0	0	0	0	0	0	1	1128	1248	44	3		3	ATP1A2	1	160109764	Silent	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	5565356	160109764	89140857	4	4381											
MAEL	84944	mdanderson.org	37	chr1	166961963	166961963	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tattttttgaacatttttagCcatggcgagctacctcctca	6	10	1	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_032858	exon4	c.C366T	p.S122S	TTTTAGCCATGGC		42	3	0.07	61	0	0				3	0	0				T	166961963	C	T	166961963	2	4	63	1	0	0	0	0	0	0	0	1	9199	738	26	2		2	MAEL	1	166961963	Silent	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10	6852199	166961963	82288658	5	4382											
NPL	80896	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	182798766	182798766	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaactcaaagtttcaaagaaCcaaaggactcttcctctggg	7	10	4	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	NPL	NM_001200056	exon13	c.C807A	p.N269K	AAAGAACCAAAGG		376	13	0.03	343	1	0.0029154519		55		16	0	0				A	182798766	C	A	182798766	3	1	63	1	0	0	0	0	1	0	0	0	10632	522	18	3		3	NPL	1	182798766	Missense_Mutation	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10	15836803	182798766	66451855	6	4383											
CRB1	23418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	197390687	197390687	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggtaatatttgcagagGctgtgacccttaccttaatc	10	8	0	2	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001257966	exon6	c.G1729T	p.A577S	GCAGAGGCTGTGA		87	13	0.15	86	0	0				0	0					T	197390687	G	T	197390687	3	4	63	1	0	0	0	0	1	0	0	0	3871	1203	42	2	1751	2	CRB1	1	197390687	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	14591921	197390687	51859934	7	4384											
NEK7	140609	mdanderson.org	37	chr1	198288648	198288648	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgcatgcactgcaagcaGctaaacatgcaagatcatga	9	10	1	2	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_133494	exon10	c.G905T	p.S302I	CAAGCAGCTAAAC		41	3	0.07	40	0	0				5	0	0				T	198288648	G	T	198288648	3	4	63	1	0	0	0	0	1	0	0	0	10375	971	34	2	939	2	NEK7	1	198288648	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	897961	198288648	50961973	8	4385											
KLHDC8A	55220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	205307669	205307669	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccactcagagagccagccacAaaatctgcccgccgcttctt	7	17	3	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_018203	exon5	c.T813G	p.F271L	AGCCACAAAATCT		84	27	0.32	82	0	0				4	0	0				C	205307669	A	C	205307669	3	2	63	1	0	0	0	0	1	0	0	0	8404	127	5	4	247	4	KLHDC8A	1	205307669	Missense_Mutation	SNP	A	TCGA-2G-AAL7-01A-11D-A42Y-10	7019021	205307669	43942952	9	4386											
WNT9A	7483	mdanderson.org	37	chr1	228112986	228112986	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcttgagcaggctggcccgGtagcggccctccagcgtgca	15	15	0	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_003395	exon2	c.C330T	p.Y110Y	GGCCCGGTAGCGG		35	3	0.09	37	0	0				9	0	0				A	228112986	G	A	228112986	2	1	63	1	0	0	0	0	0	0	0	1	17457	1256	44	3		3	WNT9A	1	228112986	Silent	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	22805317	228112986	21137635	10	4387											
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	235904732	235904732	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agatacttacttgtagggatGggctgagacagtctcgtagt	13	6	1	2	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_000081	exon31	c.C8348T	p.P2783L	AGGGATGGGCTGA		94	30	0.32	90	0	0				0	0					A	235904732	G	A	235904732	3	1	63	1	0	0	0	0	1	0	0	0	9173	1348	47	3	3149	3	LYST	1	235904732	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	7791746	235904732	13345889	11	4388											
PXDN	7837	hgsc.bcm.edu	37	chr2	1677521	1677521	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tctgtctcctgtgtgttctgGatcatcagggtcccatcgtc	10	12	5	0	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_012293	exon9	c.C912A	p.I304I	GTTCTGGATCATC		98	4	0.04	128	0	0				13	0	0				T	1677521	G	T	1677521	2	4	63	1	0	0	0	0	0	0	0	1	12898	1164	41	3		3	PXDN	2	1677521	Silent	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10		1677521	241521852	12	4389											
SH3RF3	344558	mdanderson.org	37	chr2	109746264	109746264	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agagcatcgtgtgctcgcgcCacgagctgcgctgccccgag	14	15	0	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001099289	exon1	c.C268T	p.H90Y	TCGCGCCACGAGC		16	2	0.13	23	0	0				1	0	0				T	109746264	C	T	109746264	3	4	63	1	0	0	0	0	1	0	0	0	14314	594	21	3	270	3	SH3RF3	2	109746264	Missense_Mutation	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10	108068743	109746264	133453109	13	4390											
TTN	7273	mdanderson.org	37	chr2	179442124	179442124	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttcctgccttggaccaacTtgattttggaaggggtttgc	11	8	0	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001267550	exon324	c.A68938G	p.S22980G	ACCAACTTGATTT		39	3	0.08	42	1	0.0238095238				10	0	0				C	179442124	T	C	179442124	3	2	63	1	0	0	0	0	1	0	0	0	16796	1609	56	4	39197	4	TTN	2	179442124	Missense_Mutation	SNP	T	TCGA-2G-AAL7-01A-11D-A42Y-10	69695860	179442124	63757249	14	4391											
CLK1	1195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	201721420	201721420	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcacctaaaataacttcagGtgctctataatgtcttgtag	6	9	4	0	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001162407	exon9	c.C1168T	p.P390S	CTTCAGGTGCTCT		254	72	0.28	283	0	0				70	15	0.21				A	201721420	G	A	201721420	3	1	63	1	0	0	0	0	1	0	0	0	3559	1261	44	3	432	3	CLK1	2	201721420	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	22279296	201721420	41477953	15	4392											
NDUFS1	4719	broad.mit.edu	37	chr2	207009656	207009656	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcttcattgatgtcctcatGcatacgtggcaaaatcctca	6	12	4	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	NDUFS1	NM_001199984	exon9	c.C874T	p.H292Y	CCTCATGCATACG		166	5	0.03	170	0	0		82		55	0	0				A	207009656	G	A	207009656	3	1	63	1	0	0	0	0	1	0	0	0	10337	1319	46	2	1395	2	NDUFS1	2	207009656	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	5288236	207009656	36189717	16	4393											
SNED1	25992	broad.mit.edu	37	chr2	241979571	241979571	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctctgcggtgtgtgtgtgCcaggccggatacaccggagc	17	11	1	0	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	SNED1,NS,carcinoma,0,1	SNED1	NM_001080437	exon7	c.C1125T	p.C375C	TGTGTGCCAGGCC		57	5	0.09	39	2	0.0512820513		76	1	1	0	0				T	241979571	C	T	241979571	2	4	63	1	0	0	0	0	0	0	0	1	14898	747	26	2		2	SNED1	2	241979571	Silent	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10	34969915	241979571	1219802	17	4394											
TRIM71	131405	mdanderson.org	37	chr3	32915369	32915369	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcgtgagtgcacaatgggCcggcatgggggccacagctt	16	10	0	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001039111	exon2	c.C912T	p.G304G	AATGGGCCGGCAT		46	3	0.07	57	0	0				14	0	0				T	32915369	C	T	32915369	2	4	63	1	0	0	0	0	0	0	0	1	16604	726	26	2		2	TRIM71	3	32915369	Silent	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10		32915369	165107061	18	4395											
DZIP3	9666	mdanderson.org	37	chr3	108373068	108373068	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cagtcagtagacttataaaaGatgatgcaagtgatgttcaa	9	5	2	4	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	DZIP3,colon,carcinoma,0,1	DZIP3	NM_014648	exon19	c.G2110T	p.D704Y	ATAAAAGATGATG		47	3	0.06	53	0	0		0	1	13	0	0				T	108373068	G	T	108373068	3	4	63	1	0	0	0	0	1	0	0	0	4891	942	33	3	2180	3	DZIP3	3	108373068	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	75457699	108373068	89649362	19	4396											
MUC4	4585	bcgsc.ca	37	chr3	195505870	195505870	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggaagtgtcggtgacaGgaagaggggtggtgtcacct	18	6	1	3	rs201928034		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	MUC4	NM_018406	exon2	c.C12581T	p.P4194L	GTGACAGGAAGAG		83	7	0.08	77	2	0.025974026		1505		24	2	0.08				A	195505870	G	A	195505870	3	1	63	1	0	0	0	0	1	0	0	0	10025	1000	35	3		3	MUC4	3	195505870	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	87132802	195505870	2516560	20	4397											
HSD17B4	3295	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr5	118788317	118788317	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgggtggtactggtcaccgGcgcgggggcaggtgagcatg	21	9	1	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_000414	exon1	c.G47T	p.G16V	TCACCGGCGCGGG		80	5	0.06	68	0	0				40	0	0				T	118788317	G	T	118788317	3	4	63	1	0	0	0	0	1	0	0	0	7426	1203	42	2	49	2	HSD17B4	5	118788317	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10		118788317	62126943	21	4398											
CDKAL1	54901	mdanderson.org	37	chr6	20739812	20739812	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgttcctcaagcccagcctcGccaggactaccttaagggac	9	16	1	0	rs149431105	bycluster	TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	CDKAL1,colon,carcinoma,0,1	CDKAL1	NM_017774	exon6	c.G434T	p.R145L	AGCCTCGCCAGGA		48	3	0.06	44	0	0	0	0	1	15	0	0				T	20739812	G	T	20739812	3	4	63	1	0	0	0	0	1	0	0	0	3174	1087	38	1	448	1	CDKAL1	6	20739812	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10		20739812	150375255	22	4399											
RING1	6015	broad.mit.edu;mdanderson.org	37	chr6	33179304	33179304	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caccccctgctcgtggagaaGggagaatactgccagacgag	13	12	0	3	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	RING1	NM_002931	exon5	c.G825T	p.K275N	GGAGAAGGGAGAA		39	4	0.1	34	0	0		40		69	0	0				T	33179304	G	T	33179304	3	4	63	1	0	0	0	0	1	0	0	0	13425	991	35	3	839	3	RING1	6	33179304	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	12439492	33179304	137935763	23	4400											
LRRC1	55227	mdanderson.org	37	chr6	53660065	53660065	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggcggcgatgttccactGcatccccctgtggcggtgca	16	13	0	0	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_018214	exon1	c.G11T	p.C4F	TCCACTGCATCCC		26	3	0.12	21	0	0				3	0	0				T	53660065	G	T	53660065	3	4	63	1	0	0	0	0	1	0	0	0	9010	1319	46	2	13	2	LRRC1	6	53660065	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	20480761	53660065	117455002	24	4401											
ARID1B	57492	broad.mit.edu;mdanderson.org	37	chr6	157100005	157100005	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcggcggcggcggcggCggaggaggaggaggcagcgg	27	9	0	0	rs184815562	bycluster;by1000genomes	TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	ARID1B	NM_017519	exon1	c.C942A	p.G314G	CGGCGGCGGAGGA		32	4	0.13	26	0	0		320		0	0					A	157100005	C	A	157100005	2	1	63	1	0	0	0	0	0	0	0	1	911	755	27	1		1	ARID1B	6	157100005	Silent	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10	103439940	157100005	14015062	25	4402											
RAC1	5879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	6426908	6426908	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	atttcctggagaatatatccCtactgtgtaagtatcttaaa	6	7	1	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_006908	exon2	c.C101G	p.P34R	ATATCCCTACTGT		108	17	0.16	105	0	0				63	28	0.44				G	6426908	C	G	6426908	3	3	63	1	0	0	0	0	1	0	0	0	13025	681	24	5	107	5	RAC1	7	6426908	Missense_Mutation	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10		6426908	152711755	26	4403											
DYNC1I1	1780	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	95439756	95439756	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacgactctgatctggatcGcaaacgacgagagacagagg	14	9	2	3	rs377495263		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	DYNC1I1	NM_004411	exon3	c.G161A	p.R54H	TGGATCGCAAACG		94	5	0.05	85	0	0		111		0	0					A	95439756	G	A	95439756	3	1	63	1	0	0	0	0	1	0	0	0	4868	1087	38	1	167	1	DYNC1I1	7	95439756	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	89012848	95439756	63698907	27	4404											
POTEA	340441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	43152474	43152474	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgcgttaatgttgctacaaCatggcactgatccaaatctt	8	9	1	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001005365	exon3	c.C460G	p.H154D	CTACAACATGGCA		176	40	0.23	165	0	0				0	0					G	43152474	C	G	43152474	3	3	63	1	0	0	0	0	1	0	0	0	12308	478	17	5	470	5	POTEA	8	43152474	Missense_Mutation	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10		43152474	103211548	28	4405											
RIMS2	9699	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	104831755	104831755	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgcaatttgagacattgcGccaggtctgcaattctgttt	9	8	2	1	rs377178152		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	RIMS2_ENST00000507740,NS,carcinoma,0,2	RIMS2_ENST00000507740	NM_014677	exon1	c.G20A	p.R7H	CATTGCGCCAGGT		84	7	0.08	57	0	0		0	2	0	0					A	104831755	G	A	104831755	3	1	63	1	0	0	0	0	1	0	0	0	13419	1087	38	1	732	1	RIMS2	8	104831755	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	61679281	104831755	41532267	29	4406											
NOV	4856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	120435213	120435213	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgctgctgcactccccacaaTaccaaaaccatccaggcaga	6	17	0	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_002514	exon5	c.T915G	p.N305K	CCACAATACCAAA		215	34	0.16	132	0	0				2	0	0				G	120435213	T	G	120435213	3	3	63	1	0	0	0	0	1	0	0	0	10599	1403	49	4	933	4	NOV	8	120435213	Missense_Mutation	SNP	T	TCGA-2G-AAL7-01A-11D-A42Y-10	15603458	120435213	25928809	30	4407											
AKNA	80709	mdanderson.org	37	chr9	117124782	117124782	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggtactcctcctctaggGccgcgtgggcagccttcagc	12	15	3	0	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_030767	exon8	c.C1820A	p.A607D	TCTAGGGCCGCGT		38	3	0.08	42	0	0				12	0	0				T	117124782	G	T	117124782	3	4	63	1	0	0	0	0	1	0	0	0	460	1203	42	2	2559	2	AKNA	9	117124782	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10		117124782	24088649	31	4408											
ANKRD2	26287	mdanderson.org	37	chr10	99337614	99337614	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	acttgctggtgctggaggatGagaagcaccacggggctcag	16	9	1	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	ANKRD2,NS,carcinoma,-1,1	ANKRD2	NM_020349	exon2	c.G226T	p.E76X	GAGGATGAGAAGC		34	3	0.09	38	0	0		-1	1	1	0	0				T	99337614	G	T	99337614	4	4	63	1	0	0	0	0	0	1	0	0	643	1291	45	3	232	3	ANKRD2	10	99337614	Nonsense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10		99337614	36197133	32	4409											
MRVI1	10335	mdanderson.org	37	chr11	10597927	10597927	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcctgagctccaccaggaGtccctctgggctgccgagca	12	15	1	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_130385	exon21	c.C2691A	p.D897E	CCAGGAGTCCCTC		41	3	0.07	49	0	0				2	0	0				T	10597927	G	T	10597927	3	4	63	1	0	0	0	0	1	0	0	0	9901	1020	36	3	51	3	MRVI1	11	10597927	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10		10597927	124408589	33	4410											
SOX6	55553	mdanderson.org	37	chr11	16068174	16068174	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atctgctctcgcatcttccgCgcctcctgaatggctttcat	7	15	4	1	rs373068695		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	SOX6_ENST00000527619,NS,lymphoid_neoplasm,-1,2	SOX6_ENST00000527619	NM_001145819	exon12	c.G1548A	p.A516A	CTTCCGCGCCTCC		45	3	0.07	52	0	0		-1	2	0	0					T	16068174	C	T	16068174	2	4	63	1	0	0	0	0	0	0	0	1	15008	755	27	1		1	SOX6	11	16068174	Silent	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10	5470247	16068174	118938342	34	4411											
ZFP91	80829	mdanderson.org	37	chr11	58377393	58377393	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acctagccggggctggcgtaGtagtaggacatctgtttctc	13	10	2	0	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001197051	exon3	c.G461T	p.S154I	GGCGTAGTAGTAG		67	4	0.06	73	0	0				3	0	0				T	58377393	G	T	58377393	3	4	63	1	0	0	0	0	1	0	0	0	17712	1029	36	3	471	3	ZFP91	11	58377393	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	42309219	58377393	76629123	35	4412											
CEP57	9702	mdanderson.org	37	chr11	95546250	95546250	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	caagaaagggagaattcaaaGaatgaggaatcaaagcacaa	10	5	2	4	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001243777	exon3	c.G357T	p.K119N	TTCAAAGAATGAG		41	3	0.07	73	0	0				18	0	0				T	95546250	G	T	95546250	3	4	63	1	0	0	0	0	1	0	0	0	3278	933	33	3	367	3	CEP57	11	95546250	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	37168857	95546250	39460266	36	4413											
HMBS	3145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	118958997	118958997	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaagatgagagtgattcgCgtgggtacccgcaagagcca	13	10	0	4	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	HMBS,NS,carcinoma,+2,1	HMBS	NM_000190	exon2	c.C66T	p.R22R	GATTCGCGTGGGT		63	13	0.21	68	0	0		2	1	41	18	0.44				T	118958997	C	T	118958997	2	4	63	1	0	0	0	0	0	0	0	1	7259	755	27	1		1	HMBS	11	118958997	Silent	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10	23412747	118958997	16047519	37	4414											
USP5	8078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	6965261	6965261	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcattttgccagattacCtggagattgcccgggatgga	12	8	1	2	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_003481	exon4	c.C385T	p.L129L	GATTACCTGGAGA		263	38	0.14	100	0	0				115	18	0.16				T	6965261	C	T	6965261	2	4	63	1	0	0	0	0	0	0	0	1	17140	680	24	3		3	USP5	12	6965261	Silent	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10		6965261	126886634	38	4415											
KRT6A	3853	broad.mit.edu	37	chr12	52883755	52883755	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tgacgtggtcgatctcagatCtcagcctctggatcatgcgg	12	11	4	2	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	KRT6A	NM_005554	exon6	c.G1175C	p.R392T	TCAGATCTCAGCC		220	7	0.03	145	0	0		89		0	0					G	52883755	C	G	52883755	3	3	63	1	0	0	0	0	1	0	0	0	8522	913	32	5	535	5	KRT6A	12	52883755	Missense_Mutation	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10	45918494	52883755	80968140	39	4416											
KRT6A	3853	broad.mit.edu	37	chr12	52886666	52886666	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaatgccggctccaccacCgaaaccaaatccactcccgg	7	19	0	0	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	KRT6A	NM_005554	exon1	c.G307A	p.G103S	CACCACCGAAACC		352	41	0.12	250	0	0		89		0	0					T	52886666	C	T	52886666	3	4	63	1	0	0	0	0	1	0	0	0	8522	652	23	1	1423	1	KRT6A	12	52886666	Missense_Mutation	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10	2911	52886666	80965229	40	4417											
NCOR2	9612	mdanderson.org	37	chr12	124887102	124887102	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgttgttgCtgctgctgtcagaccccggg	14	12	1	1	rs7488825	bycluster;alternate_allele	TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_006312	exon16	c.G1488A	p.Q496Q	TTGTTGCTGCTGC		39	3	0.08	42	0	0				7	0	0				T	124887102	C	T	124887102	2	4	63	1	0	0	0	0	0	0	0	1	10282	796	28	2		2	NCOR2	12	124887102	Silent	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10	72000436	124887102	8964793	41	4418											
SLITRK1	114798	broad.mit.edu	37	chr13	84455509	84455509	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgcagacttgtgaagcccTttttttcacagtctacgtgt	9	10	2	2	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	SLITRK1	NM_052910	exon1	c.A134G	p.K45R	AAGCCCTTTTTTT		105	4	0.04	95	0	0		196		0	0					C	84455509	T	C	84455509	3	2	63	1	0	0	0	0	1	0	0	0	14795	1609	56	4	1960	4	SLITRK1	13	84455509	Missense_Mutation	SNP	T	TCGA-2G-AAL7-01A-11D-A42Y-10		84455509	30714369	42	4419											
MEGF11	84465	broad.mit.edu	37	chr15	66262977	66262977	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcaaggacaatcctggctGcagttctggccaaatgtccc	11	12	1	0	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	MEGF11	NM_032445	exon8	c.C813A	p.C271X	CTGGCTGCAGTTC		115	4	0.03	124	0	0		70		0	0					T	66262977	G	T	66262977	4	4	63	1	0	0	0	0	0	1	0	0	9510	1311	46	2	2385	2	MEGF11	15	66262977	Nonsense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10		66262977	36268415	43	4420											
CLK3	1198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	74914482	74914482	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagccaacagagcagtaagCgcagcagccggagtgtggaa	15	9	0	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001130028	exon4	c.C835T	p.R279C	AGTAAGCGCAGCA		84	18	0.21	95	0	0				38	6	0.16				T	74914482	C	T	74914482	3	4	63	1	0	0	0	0	1	0	0	0	3561	768	27	1	849	1	CLK3	15	74914482	Missense_Mutation	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10	8651505	74914482	27616910	44	4421											
PTX4	390667	mdanderson.org	37	chr16	1537645	1537645	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggacgaggccctccagGcgtgccagtgagtcctgcag	15	13	0	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001013658	exon2	c.C453A	p.R151R	CTCCAGGCGTGCC		40	3	0.08	41	0	0				0	0					T	1537645	G	T	1537645	2	4	63	1	0	0	0	0	0	0	0	1	12874	1190	42	2		2	PTX4	16	1537645	Silent	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10		1537645	88817108	45	4422											
COQ7	10229	mdanderson.org	37	chr16	19089428	19089428	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcctatgccgtcctgaagaGcattatccaggccggatgca	11	12	0	2	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_016138	exon6	c.G602A	p.S201N	TGAAGAGCATTAT		43	3	0.07	48	0	0				53	0	0				A	19089428	G	A	19089428	3	1	63	1	0	0	0	0	1	0	0	0	3773	971	34	2	624	2	COQ7	16	19089428	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	17551783	19089428	71265325	46	4423											
ACSM2A	123876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	20471599	20471599	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgatgtgttggatcactggGctgacatggagaaggtaatg	16	4	1	3	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001010845	exon3	c.G163A	p.A55T	CACTGGGCTGACA		96	28	0.29	132	0	0				0	0					A	20471599	G	A	20471599	3	1	63	1	0	0	0	0	1	0	0	0	183	1203	42	2	165	2	ACSM2A	16	20471599	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	1382171	20471599	69883154	47	4424											
CLEC18B	497190	broad.mit.edu	37	chr16	74444923	74444923	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgatctgggccagcacccCgcctttcctctgtaacccca	7	18	2	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	CLEC18B,NS,carcinoma,0,6	CLEC18B	NM_001011880	exon9	c.G994A	p.G332R	GCACCCCGCCTTT		247	4	0.02	301	1	0.0033222591		45	6	3	0	0				T	74444923	C	T	74444923	3	4	63	1	0	0	0	0	1	0	0	0	3526	652	23	1	393	1	CLEC18B	16	74444923	Missense_Mutation	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10	53973324	74444923	15909830	48	4425											
CTU2	348180	mdanderson.org	37	chr16	88780056	88780056	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcccctgcctcccgcaggGcttctcggatgagcggcacg	13	17	1	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001012759	exon9	c.G875T	p.G292V	CGCAGGGCTTCTC		37	3	0.08	42	0	0				83	0	0				T	88780056	G	T	88780056	3	4	63	1	0	0	0	0	1	0	0	0	4071	1217	42	2	909	2	CTU2	16	88780056	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	14335133	88780056	1574697	49	4426											
TRIM37	4591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	57126703	57126703	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggctaagatggttatctgGtggtgacaaatctcttgact	13	6	2	3	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_015294	exon15	c.C1366G	p.P456A	TATCTGGTGGTGA		116	23	0.2	115	0	0				13	7	0.54				C	57126703	G	C	57126703	3	2	63	1	0	0	0	0	1	0	0	0	16571	1261	44	5	1576	5	TRIM37	17	57126703	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10		57126703	24068507	50	4427											
ABCA7	10347	mdanderson.org	37	chr19	1047263	1047263	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcagcgccttcttctcCcgcgccaacctggctgcggc	10	19	3	0	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_019112	exon15	c.C1953A	p.S651S	CTTCTCCCGCGCC		38	3	0.08	41	0	0				3	0	0				A	1047263	C	A	1047263	2	1	63	1	0	0	0	0	0	0	0	1	37	610	22	3		3	ABCA7	19	1047263	Silent	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10		1047263	58081720	51	4428											
C19orf57	79173	mdanderson.org	37	chr19	13996848	13996848	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccggccagcaagggcccggCttgttccccgaaggaaagag	14	14	0	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_024323	exon7	c.G1689A	p.K563K	GCCCGGCTTGTTC		35	3	0.09	44	1	0.0227272727				3	0	0				T	13996848	C	T	13996848	2	4	63	1	0	0	0	0	0	0	0	1	1951	796	28	2		2	C19orf57	19	13996848	Silent	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10	12949585	13996848	45132135	52	4429											
ANKLE1	126549	broad.mit.edu	37	chr19	17397500	17397501	+	Frame_Shift_Del	DEL	TT	TT	-													tgtgtgtgtgtgtgtgtgtgTttgtgtgtgtgtgtgtgtgt					rs10606406	alternate_allele	TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	TT	TT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	ANKLE1	.	.	.	.	TGTGTGTTTGTGT		12	10	0.83	10	0	0		27		1	0	0				-	17397501	TT	-	17397500	7	5	63	1	0	1	0	1	0	0	0	0	628	1740	60	0		0	ANKLE1	19	17397500	Frame_Shift_Del	DEL	TT	TCGA-2G-AAL7-01A-11D-A42Y-10	3400652	17397500	41731483	53	4430											
NDUFA13	51079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	19638552	19638552	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	aacctggaggaggaggccatCatcatgaaggacgtgcccga	14	10	2	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_015965	exon4	c.C288A	p.I96I	GGCCATCATCATG		67	23	0.34	53	0	0				1380	532	0.39				A	19638552	C	A	19638552	2	1	63	1	0	0	0	0	0	0	0	1	10309	816	29	3		3	NDUFA13	19	19638552	Silent	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10	2241052	19638552	39490431	54	4431											
ATP1A3	478	mdanderson.org	37	chr19	42482471	42482471	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcgggcaggtaataatgGcagaaacctagtggcaggga	14	8	0	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001256214	exon13	c.C1677A	p.C559X	ATAATGGCAGAAA		50	3	0.06	26	0	0				16	0	0				T	42482471	G	T	42482471	4	4	63	1	0	0	0	0	0	1	0	0	1129	1195	42	2	1447	2	ATP1A3	19	42482471	Nonsense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	22843919	42482471	16646512	55	4432											
ZNF526	116115	mdanderson.org	37	chr19	42729994	42729994	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggggtttgtggcaaggGcttcaagaagctgatccacg	15	8	1	2	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_133444	exon3	c.G1439T	p.G480V	GCAAGGGCTTCAA		32	3	0.09	54	0	0				10	0	0				T	42729994	G	T	42729994	3	4	63	1	0	0	0	0	1	0	0	0	18023	1203	42	2	1441	2	ZNF526	19	42729994	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	247523	42729994	16398989	56	4433											
BCL3	602	bcgsc.ca	37	chr19	45262002	45262002	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatcgacatcctgagggggAaggccacccggcctgcttcc	12	15	1	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	BCL3	NM_005178	exon8	c.A1081G	p.K361E	AGGGGGAAGGCCA		26	4	0.15	32	0	0		28		30	0	0				G	45262002	A	G	45262002	3	3	63	1	0	0	0	0	1	0	0	0	1373	247	9	4	1111	4	BCL3	19	45262002	Missense_Mutation	SNP	A	TCGA-2G-AAL7-01A-11D-A42Y-10	2532008	45262002	13866981	57	4434											
ZC3H4	23211	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	47570041	47570041	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	acccgtgtcagcagccggctCtgtggctttgccccccgcgt	12	17	2	0	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	ZC3H4	NM_015168	exon15	c.G3484A	p.E1162K	CCGGCTCTGTGGC		22	4	0.18	26	0	0		96		12	6	0.5				T	47570041	C	T	47570041	3	4	63	1	0	0	0	0	1	0	0	0	17628	922	32	3	431	3	ZC3H4	19	47570041	Missense_Mutation	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10	2308039	47570041	11558942	58	4435											
LHB	3972	mdanderson.org	37	chr19	49519472	49519472	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accacggggtccacaccacgCgggcagccagggagccggat	15	15	0	0	rs377599735	alternate_allele	TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	LHB,colon,carcinoma,0,2	LHB	NM_000894	exon3	c.G279T	p.P93P	ACCACGCGGGCAG		52	3	0.06	28	0	0		0	2	1	0	0				A	49519472	C	A	49519472	2	1	63	1	0	0	0	0	0	0	0	1	8800	755	27	1		1	LHB	19	49519472	Silent	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10	1949431	49519472	9609511	59	4436											
U2AF2	11338	mdanderson.org	37	chr19	56173984	56173984	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaattttgcctttttggaGgtgagctgggggagtgagtg	17	3	0	3	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001012478	exon6	c.G603T	p.E201D	TTTGGAGGTGAGC		51	3	0.06	51	1	0.0196078431				271	0	0				T	56173984	G	T	56173984	3	4	63	1	0	0	0	0	1	0	0	0	16883	1014	35	3	625	3	U2AF2	19	56173984	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	6654512	56173984	2954999	60	4437											
CHMP2A	27243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	59063125	59063125	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcagccacactaagcgagCccccagttgaggggaggtct	13	13	1	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_198426	exon6	c.G560T	p.G187V	AGCGAGCCCCCAG		56	17	0.3	90	0	0				202	97	0.48				A	59063125	C	A	59063125	3	1	63	1	0	0	0	0	1	0	0	0	3376	739	26	2	112	2	CHMP2A	19	59063125	Missense_Mutation	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10	2889141	59063125	65858	61	4438											
XRN2	22803	mdanderson.org	37	chr20	21319686	21319686	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gattttatacttttaggacaGttttagaagacgacagaaag	9	4	0	3	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_012255	exon14	c.G1238T	p.S413I	AGGACAGTTTTAG		50	4	0.08	50	0	0				99	0	0				T	21319686	G	T	21319686	3	4	63	1	0	0	0	0	1	0	0	0	17519	1029	36	3	1292	3	XRN2	20	21319686	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10		21319686	41705834	62	4439											
GATA5	140628	mdanderson.org	37	chr20	61050111	61050111	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctgccatcgaagggcccgGcagtccaggactgggccacg	15	15	0	0	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_080473	exon2	c.C467A	p.A156D	GGCCCGGCAGTCC		14	3	0.21	15	0	0				3	0	0				T	61050111	G	T	61050111	3	4	63	1	0	0	0	0	1	0	0	0	6296	1203	42	2	750	2	GATA5	20	61050111	Missense_Mutation	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	39730425	61050111	1975409	63	4440											
CCT8L2	150160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	17072477	17072477	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ctcactcaggtaaatgatctCcatccaagacctagcttgaa	6	12	3	3	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_014406	exon1	c.G964C	p.E322Q	TGATCTCCATCCA		130	31	0.24	117	0	0				0	0					G	17072477	C	G	17072477	3	3	63	1	0	0	0	0	1	0	0	0	2983	864	30	5	713	5	CCT8L2	22	17072477	Missense_Mutation	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10		17072477	34232089	64	4441											
MAGEB1	4112	broad.mit.edu	37	chrX	30269096	30269096	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcttggagctcgtctttggCcttgatttgaaggaagacaa	12	8	1	3	rs200431416	by1000genomes;alternate_allele	TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	MAGEB1	NM_177415	exon3	c.C486T	p.G162G	CTTTGGCCTTGAT		193	5	0.03	121	0	0		76		4	0	0				T	30269096	C	T	30269096	2	4	63	1	0	0	0	0	0	0	0	1	9221	726	26	2		2	MAGEB1	23	30269096	Silent	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10		30269096	125001464	65	4442											
TEX13A	56157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	104463847	104463847	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggccccccatcagaccaCaggctagtatcaaaggcctc	10	15	2	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_031274	exon5	c.G1029A	p.L343L	AGACCACAGGCTA		116	35	0.3	87	0	0				0	0					T	104463847	C	T	104463847	2	4	63	1	0	0	0	0	0	0	0	1	15834	478	17	3		3	TEX13A	23	104463847	Silent	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10	74194751	104463847	50806713	66	4443											
AMMECR1	9949	broad.mit.edu;mdanderson.org	37	chrX	109561071	109561071	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gatccccccgccgccgccgcCgcagccctgggggggagaga	16	18	0	1	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	AMMECR1	NM_015365	exon1	c.G229T	p.G77C	CGCCGCCGCAGCC		62	3	0.05	34	0	0		16		3	0	0				A	109561071	C	A	109561071	3	1	63	1	0	0	0	0	1	0	0	0	574	652	23	1	796	1	AMMECR1	23	109561071	Missense_Mutation	SNP	C	TCGA-2G-AAL7-01A-11D-A42Y-10	5097224	109561071	45709489	67	4444											
KLHL13	90293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	117043475	117043475	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tagagaaaatttccaatgacGgcgatgccatgctggtacct	10	9	0	2	novel		TCGA-2G-AAL7-01A-11D-A42Y-10	TCGA-2G-AAL7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d1ddde10-c7a7-40e6-815d-f237235c2cbb	06a9061b-3846-4626-921d-89f61fe675b5	.	.	NM_001168299	exon6	c.C1164T	p.A388A	AATGACGGCGATG		153	60	0.39	108	0	0				0	0					A	117043475	G	A	117043475	2	1	63	1	0	0	0	0	0	0	0	1	8411	1103	39	1		1	KLHL13	23	117043475	Silent	SNP	G	TCGA-2G-AAL7-01A-11D-A42Y-10	7482404	117043475	38227085	68	4445											
PLEKHN1	84069	mdanderson.org	37	chr1	909350	909350	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tacttgctctccaagaagggAgccctgcagtccagagccgc	11	14	1	2	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_032129	exon14	c.A1572G	p.G524G	GAAGGGAGCCCTG		20	2	0.1	36	0	0				4	0	0				G	909350	A	G	909350	2	3	64	1	0	0	0	0	0	0	0	1	12130	291	11	4		4	PLEKHN1	1	909350	Silent	SNP	A	TCGA-2G-AALF-01A-11D-A42Y-10		909350	248341271	1	4446											
ACAP3	116983	mdanderson.org	37	chr1	1231205	1231205	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggagagctgtggggccgcAggcacttctgcaccctccag	16	13	1	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_030649	exon18	c.T1616C	p.L539P	GGCCGCAGGCACT		18	3	0.17	20	0	0				28	0	0				G	1231205	A	G	1231205	3	3	64	1	0	0	0	0	1	0	0	0	120	188	7	4	916	4	ACAP3	1	1231205	Missense_Mutation	SNP	A	TCGA-2G-AALF-01A-11D-A42Y-10	321855	1231205	248019416	2	4447											
MEGF6	1953	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr1	3440791	3440791	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctggcagccaccgttgtgGgttcggcattcgtccacatc	12	13	0	0	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001409	exon5	c.C501A	p.T167T	GTTGTGGGTTCGG		100	5	0.05	129	0	0				1	0	0				T	3440791	G	T	3440791	2	4	64	1	0	0	0	0	0	0	0	1	9511	1219	43	3		3	MEGF6	1	3440791	Silent	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	2209586	3440791	245809830	3	4448											
TFAP2E	339488	mdanderson.org	37	chr1	36054040	36054040	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctgctccgtgcccggccgGctttcactgctcagctcaac	9	17	4	0	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_178548	exon4	c.G672A	p.R224R	CGGCCGGCTTTCA		41	3	0.07	50	0	0				0	0					A	36054040	G	A	36054040	2	1	64	1	0	0	0	0	0	0	0	1	15850	1190	42	2		2	TFAP2E	1	36054040	Silent	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	32613249	36054040	213196581	4	4449											
OSCP1	127700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	36888403	36888403	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcaggactcggtctccatAaagttcaaaagaaccttctt	6	10	4	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_145047	exon6	c.T715A	p.Y239N	CTCCATAAAGTTC		106	21	0.2	120	0	0				27	6	0.22				T	36888403	A	T	36888403	3	4	64	1	0	0	0	0	1	0	0	0	11332	362	13	5	444	5	OSCP1	1	36888403	Missense_Mutation	SNP	A	TCGA-2G-AALF-01A-11D-A42Y-10	834363	36888403	212362218	5	4450											
KCNA2	3737	mdanderson.org	37	chr1	111136543	111136543	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgtgcaatgtagttacaGctggtgtctaaattttcaag	9	7	2	0	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001204269	exon5	c.C1043A	p.A348D	GTTACAGCTGGTG		44	3	0.07	52	0	0				0	0					T	111136543	G	T	111136543	3	4	64	1	0	0	0	0	1	0	0	0	8046	986	34	2		2	KCNA2	1	111136543	Missense_Mutation	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	74248140	111136543	138114078	6	4451											
PLXNA2	5362	broad.mit.edu	37	chr1	208205034	208205034	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtacttgatggccagggggAgagcgctgccccggtgcaca	16	11	0	2	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	PLXNA2	NM_025179	exon29	c.T5126C	p.L1709P	AGGGGGAGAGCGC		200	4	0.02	174	1	0.0057471264		178		138	0	0				G	208205034	A	G	208205034	3	3	64	1	0	0	0	0	1	0	0	0	12167	304	11	4	574	4	PLXNA2	1	208205034	Missense_Mutation	SNP	A	TCGA-2G-AALF-01A-11D-A42Y-10	97068491	208205034	41045587	7	4452											
LAMB3	3914	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	209799360	209799361	+	Frame_Shift_Del	DEL	CA	CA	-													gccctctgttccccggaaatCacagtcacaggctagggcca					novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	CA	CA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	LAMB3	NM_000228	exon14	c.1609_1610del	p.537_537del	GGAAATCACAGTC		113	37	0.33	95	0	0		136		0	0					-	209799361	CA	-	209799360	7	5	64	1	0	1	0	1	0	0	0	0	8650	826	29	0	1949	0	LAMB3	1	209799360	Frame_Shift_Del	DEL	CA	TCGA-2G-AALF-01A-11D-A42Y-10	1594326	209799360	39451261	8	4453											
FBXO41	150726	mdanderson.org	37	chr2	73493769	73493769	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttggcgctggcctcccgcGccgccgtctccttcaggaac	12	18	2	0	rs369432452	alternate_allele	TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	FBXO41_ENST00000521871,colon,carcinoma,0,1	FBXO41_ENST00000521871	NM_001080410	exon2	c.C947A	p.A316E	TCCCGCGCCGCCG		32	3	0.09	25	0	0		0	1	0	0					T	73493769	G	T	73493769	3	4	64	1	0	0	0	0	1	0	0	0	5782	1087	38	1	1724	1	FBXO41	2	73493769	Missense_Mutation	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10		73493769	169705604	9	4454											
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	152381766	152381766	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggattttcctttctccttgaCaaacttctttttgtaatttg	5	8	2	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001271208	exon152	c.G22288A	p.V7430I	CCTTGACAAACTT		109	28	0.26	112	0	0				1	0	0				T	152381766	C	T	152381766	3	4	64	1	0	0	0	0	1	0	0	0	10348	478	17	3	3522	3	NEB	2	152381766	Missense_Mutation	SNP	C	TCGA-2G-AALF-01A-11D-A42Y-10	78887997	152381766	90817607	10	4455											
B3GNT7	93010	mdanderson.org	37	chr2	232263436	232263436	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgggcatgtgcctggagGtgctgggcgtgcagcccacg	17	11	1	0	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_145236	exon2	c.G1006T	p.V336L	CTGGAGGTGCTGG		41	3	0.07	56	0	0				2	0	0				T	232263436	G	T	232263436	3	4	64	1	0	0	0	0	1	0	0	0	1260	1261	44	3	1012	3	B3GNT7	2	232263436	Missense_Mutation	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	79881670	232263436	10935937	11	4456											
ITGA9	3680	mdanderson.org	37	chr3	37550050	37550050	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttttttcattccatagGtttatattttcagagctgac	5	6	2	2	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_002207	exon8	c.G829T	p.V277F	CCATAGGTTTATA		43	3	0.07	38	0	0				0	0					T	37550050	G	T	37550050	3	4	64	1	0	0	0	0	1	0	0	0	7926	1275	44	3	859	3	ITGA9	3	37550050	Missense_Mutation	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10		37550050	160472380	12	4457											
TMEM108	66000	broad.mit.edu	37	chr3	133099916	133099916	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcccatgtggccgagggggAcaaaccgcagcacagagcca	13	14	0	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	TMEM108	NM_023943	exon4	c.A1361G	p.D454G	AGGGGGACAAACC		212	5	0.02	164	1	0.006097561		67		0	0					G	133099916	A	G	133099916	3	3	64	1	0	0	0	0	1	0	0	0	16083	275	10	4	1367	4	TMEM108	3	133099916	Missense_Mutation	SNP	A	TCGA-2G-AALF-01A-11D-A42Y-10	95549866	133099916	64922514	13	4458											
FAM194A	131831	broad.mit.edu	37	chr3	150421540	150421540	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacctcctcctcctcctccTccacctcttcctcctcctcc	0	27	1	0	rs373770678		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	FAM194A	NM_152394	exon1	c.A146T	p.E49V	TCCTCCTCCACCT		131	6	0.05	104	1	0.0096153846		91		0	0					A	150421540	T	A	150421540	3	1	64	1	0	0	0	0	1	0	0	0	5557	1551	54	5	1901	5	FAM194A	3	150421540	Missense_Mutation	SNP	T	TCGA-2G-AALF-01A-11D-A42Y-10	17321624	150421540	47600890	14	4459											
ATP8A1	10396	hgsc.bcm.edu	37	chr4	42524317	42524317	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacataaagttcttaaccCtgaaaaagatagcatacatc	4	8	1	2	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001105529	exon22	c.1763-1G>T	.	TTAACCCTGAAAA		65	5	0.08	71	0	0				0	0					A	42524317	C	A	42524317	5	1	64	1	0	0	0	0	0	0	1	0	1190	695	24	3	1751	3	ATP8A1	4	42524317	Splice_Site	SNP	C	TCGA-2G-AALF-01A-11D-A42Y-10		42524317	148629959	15	4460											
SETD7	80854	mdanderson.org	37	chr4	140432921	140432921	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggtcatagccataggcaaCggtgagctcttcatcggcct	12	11	3	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_030648	exon8	c.G997A	p.V333I	AGGCAACGGTGAG		47	3	0.06	54	0	0				1	0	0				T	140432921	C	T	140432921	3	4	64	1	0	0	0	0	1	0	0	0	14189	536	19	1	107	1	SETD7	4	140432921	Missense_Mutation	SNP	C	TCGA-2G-AALF-01A-11D-A42Y-10	97908604	140432921	50721355	16	4461											
SETD7	80854	mdanderson.org	37	chr4	140432973	140432973	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtgcggatgcatttgatGggcccaaaacgggggtggac	18	7	0	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_030648	exon8	c.C945A	p.P315P	TTTGATGGGCCCA		42	3	0.07	40	0	0				0	0					T	140432973	G	T	140432973	2	4	64	1	0	0	0	0	0	0	0	1	14189	1335	47	3		3	SETD7	4	140432973	Silent	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	52	140432973	50721303	17	4462											
FAT2	2196	mdanderson.org	37	chr5	150923405	150923405	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcccgatgagctgttaatgAagaagtgcctgtcctgattg	11	8	0	4	rs6892335	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001447	exon9	c.T7283A	p.F2428Y	TTAATGAAGAAGT		63	2	0.03	67	0	0				0	0					T	150923405	A	T	150923405	3	4	64	1	0	0	0	0	1	0	0	0	5722	246	9	5	5826	5	FAT2	5	150923405	Missense_Mutation	SNP	A	TCGA-2G-AALF-01A-11D-A42Y-10		150923405	29991855	18	4463											
FOXF2	2295	broad.mit.edu	37	chr6	1390978	1390980	+	In_Frame_Del	DEL	CAC	CAC	-													cccccagccacgcgcaccctCaccaccaccaccaccaccac					rs368362837		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	CAC	CAC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	FOXF2	NM_001452	exon1	c.796_798del	p.266_266del	CACCCTCACCACC		6	2	0.33	8	0	0		28		0	0					-	1390980	CAC	-	1390978	7	5	64	1	0	1	0	1	0	0	0	0	6039	826	29	0	798	0	FOXF2	6	1390978	In_Frame_Del	DEL	CAC	TCGA-2G-AALF-01A-11D-A42Y-10		1390978	169724089	19	4464											
CSNK2B	1460	mdanderson.org	37	chr6	31635645	31635645	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcttccatgtcctgacagGtggatgaagactacatccag	11	10	0	3	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001320	exon3	c.G73T	p.V25L	TGACAGGTGGATG		44	3	0.07	58	0	0				366	0	0				T	31635645	G	T	31635645	3	4	64	1	0	0	0	0	1	0	0	0	3984	1275	44	3	79	3	CSNK2B	6	31635645	Missense_Mutation	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	30244667	31635645	139479422	20	4465											
UTRN	7402	broad.mit.edu;mdanderson.org	37	chr6	144869950	144869950	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccaacattgtcactgttgGggatgtagaagagatcaata	11	6	2	2	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	UTRN	NM_007124	exon46	c.G6770T	p.G2257V	CTGTTGGGGATGT		58	4	0.07	92	0	0		327		0	0					T	144869950	G	T	144869950	3	4	64	1	0	0	0	0	1	0	0	0	17162	1232	43	3	6952	3	UTRN	6	144869950	Missense_Mutation	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	113234305	144869950	26245117	21	4466											
TNRC18	84629	mdanderson.org	37	chr7	5427362	5427362	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagcccaggccccagccggCcactgccgccactgtccttc	9	22	0	0	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001080495	exon5	c.G2093A	p.G698D	AGCCGGCCACTGC		26	3	0.12	32	0	0				16	0	0				T	5427362	C	T	5427362	3	4	64	1	0	0	0	0	1	0	0	0	16398	739	26	2	6917	2	TNRC18	7	5427362	Missense_Mutation	SNP	C	TCGA-2G-AALF-01A-11D-A42Y-10		5427362	153711301	22	4467											
ITGB8	3696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	20406739	20406739	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatacccatctgtgcatgtTataatacccactgaaaatga	6	9	1	2	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_002214	exon3	c.T318G	p.V106V	GCATGTTATAATA		119	29	0.24	77	0	0				5	2	0.4				G	20406739	T	G	20406739	2	3	64	1	0	0	0	0	0	0	0	1	7944	1741	61	4		4	ITGB8	7	20406739	Silent	SNP	T	TCGA-2G-AALF-01A-11D-A42Y-10	14979377	20406739	138731924	23	4468											
SKAP2	8935	broad.mit.edu	37	chr7	26766623	26766626	+	Splice_Site	DEL	TGTC	TGTC	-													aaattcacctttctgttgttTgtctgttgaagataaaacca					novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	TGTC	TGTC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	SKAP2,caecum,carcinoma,+1,1	SKAP2	NM_003930	exon7	c.470_472del	p.157_158del	GTTGTTTGTCTGT		103	7	0.07	36	0	0		40	1	0	0					-	26766626	TGTC	-	26766623	8	5	64	1	0	1	0	1	0	0	1	0	14410	1821	63	0	631	0	SKAP2	7	26766623	Splice_Site	DEL	TGTC	TCGA-2G-AALF-01A-11D-A42Y-10	6359884	26766623	132372040	24	4469											
PPIA	5478	mdanderson.org	37	chr7	44839373	44839373	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaatttgaagatgagaacTtcatcctaaagcatacgggt	9	6	1	4	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_021130	exon4	c.T262A	p.F88I	GAGAACTTCATCC		21	3	0.14	15	0	0				5067	2	0				A	44839373	T	A	44839373	3	1	64	1	0	0	0	0	1	0	0	0	12360	1609	56	5	276	5	PPIA	7	44839373	Missense_Mutation	SNP	T	TCGA-2G-AALF-01A-11D-A42Y-10	18072750	44839373	114299290	25	4470											
POR	5447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	75615073	75615073	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tcccagttccgcctgcccttCaaggccaccacgcctgtcat	7	19	2	0	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_000941	exon13	c.C1575G	p.F525L	GCCCTTCAAGGCC		86	14	0.16	82	0	0				133	32	0.24				G	75615073	C	G	75615073	3	3	64	1	0	0	0	0	1	0	0	0	12304	825	29	5	1621	5	POR	7	75615073	Missense_Mutation	SNP	C	TCGA-2G-AALF-01A-11D-A42Y-10	30775700	75615073	83523590	26	4471											
PUS7	54517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	105105799	105105799	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacatcgaaaccaggcaaggGcattaccacatcatggatag	9	10	1	0	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	PUS7,NS,carcinoma,+2,2	PUS7	NM_019042	exon13	c.C1588T	p.P530S	GCAAGGGCATTAC		87	17	0.2	61	0	0		2	2	7	4	0.57				A	105105799	G	A	105105799	3	1	64	1	0	0	0	0	1	0	0	0	12884	1203	42	2	413	2	PUS7	7	105105799	Missense_Mutation	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	29490726	105105799	54032864	27	4472											
CDHR3	222256	broad.mit.edu	37	chr7	105641932	105641932	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acacgagtgtacacagtcctGgaggaactgagtccaggaac	12	10	0	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	CDHR3	NM_152750	exon7	c.G738T	p.L246L	AGTCCTGGAGGAA		244	5	0.02	200	0	0		153		0	0					T	105641932	G	T	105641932	3	4	64	1	0	0	0	0	1	0	0	0	3142	1335	47	3	764	3	CDHR3	7	105641932	Missense_Mutation	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	536133	105641932	53496731	28	4473											
CPA2	1358	hgsc.bcm.edu;broad.mit.edu	37	chr7	129919488	129919488	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	acaaatgtaccaagttagatGactttgatgagctggtgagt	11	5	0	5	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001869	exon9	c.G973A	p.D325N	TTAGATGACTTTG		150	6	0.04	115	0	0				3	0	0				A	129919488	G	A	129919488	3	1	64	1	0	0	0	0	1	0	0	0	3813	1290	45	3	1007	3	CPA2	7	129919488	Missense_Mutation	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	24277556	129919488	29219175	29	4474											
MLL3	58508	broad.mit.edu	37	chr7	151921174	151921174	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagactggacaggaagataaGcttgcacaaggagcgcactg	13	9	0	2	rs1910986		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	MLL3_ENST00000355193,NS,carcinoma,0,2	MLL3	NM_170606	exon20	c.C3249T	p.S1083S	AGATAAGCTTGCA		226	6	0.03	164	0	0		1564	2	1	0	0				A	151921174	G	A	151921174	2	1	64	1	0	0	0	0	0	0	0	1	9669	962	34	2		2	MLL3	7	151921174	Silent	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	22001686	151921174	7217489	30	4475											
PABPC1	26986	hgsc.bcm.edu	37	chr8	101721953	101721953	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgctgcgaccaccctccaTcataacctattaaaaaaaag	4	12	1	0	rs370158190	alternate_allele	TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	PABPC1,NS,carcinoma,+2,1	PABPC1	NM_002568	exon8	c.A979T	p.M327L	CCTCCATCATAAC		74	6	0.08	64	1	0.015625		2	1	289	0	0				A	101721953	T	A	101721953	3	1	64	1	0	0	0	0	1	0	0	0	11409	1435	50	5	959	5	PABPC1	8	101721953	Missense_Mutation	SNP	T	TCGA-2G-AALF-01A-11D-A42Y-10		101721953	44642069	31	4476											
GAS1	2619	mdanderson.org	37	chr9	89561103	89561103	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggcattcgtccgtgcagcGcagcccgttgaagactttgc	13	13	0	2	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_002048	exon1	c.C592T	p.R198C	TGCAGCGCAGCCC		29	3	0.1	16	0	0				0	0					A	89561103	G	A	89561103	3	1	64	1	0	0	0	0	1	0	0	0	6283	1087	38	1	449	1	GAS1	9	89561103	Missense_Mutation	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10		89561103	51652328	32	4477											
KIN	22944	broad.mit.edu	37	chr10	7820886	7820886	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catcaaggtcctgctttttcTttttctccagttccagttgc	6	12	3	0	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	KIN	NM_012311	exon5	c.A473G	p.K158R	TTTTTCTTTTTCT		138	3	0.02	152	1	0.0065789474		39		32	0	0				C	7820886	T	C	7820886	3	2	64	1	0	0	0	0	1	0	0	0	8357	1609	56	4	744	4	KIN	10	7820886	Missense_Mutation	SNP	T	TCGA-2G-AALF-01A-11D-A42Y-10		7820886	127713861	33	4478											
ITGA8	8516	mdanderson.org	37	chr10	15761727	15761727	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagaggggcgcgatcagcGgcgcctggcttccccgggga	18	13	1	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_003638	exon1	c.C44A	p.P15Q	ATCAGCGGCGCCT		11	2	0.18	11	0	0				0	0					T	15761727	G	T	15761727	3	4	64	1	0	0	0	0	1	0	0	0	7925	1116	39	1	3267	1	ITGA8	10	15761727	Missense_Mutation	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	7940841	15761727	119773020	34	4479											
MMRN2	79812	mdanderson.org	37	chr10	88702582	88702582	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gcggccagctcgtcccagccGagcgcctgctcctgcagccc	12	20	0	0	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_024756	exon6	c.C1959A	p.L653L	CCAGCCGAGCGCC		17	2	0.12	17	0	0				1	0	0				T	88702582	G	T	88702582	2	4	64	1	0	0	0	0	0	0	0	1	9719	1045	37	1		1	MMRN2	10	88702582	Silent	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	72940855	88702582	46832165	35	4480											
PDZD7	79955	mdanderson.org	37	chr10	102772009	102772009	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcctctatgcctccctcgtGcacatactgcagatagaggc	9	14	1	2	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001195263	exon12	c.C1756T	p.H586Y	CCTCGTGCACATA		38	3	0.08	24	0	0				0	0					A	102772009	G	A	102772009	3	1	64	1	0	0	0	0	1	0	0	0	11750	1334	46	2		2	PDZD7	10	102772009	Missense_Mutation	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	14069427	102772009	32762738	36	4481											
PDCD4	27250	broad.mit.edu	37	chr10	112647501	112647501	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tatccttagcattggaggggAaggctagtcatagagagatg	14	5	1	2	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	PDCD4	NM_014456	exon6	c.A634G	p.K212E	GAGGGGAAGGCTA		173	3	0.02	141	0	0		39		12	1	0.08	rescued with RNA-seq			G	112647501	A	G	112647501	3	3	64	1	0	0	0	0	1	0	0	0	11667	247	9	4	666	4	PDCD4	10	112647501	Missense_Mutation	SNP	A	TCGA-2G-AALF-01A-11D-A42Y-10	9875492	112647501	22887246	37	4482											
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	129901783	129901783	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacacttgctgctggagccGgtgtctgttttgcagattcc	11	10	1	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_002417	exon13	c.C8321T	p.P2774L	GGAGCCGGTGTCT		133	9	0.07	156	0	0				6	0	0				A	129901783	G	A	129901783	3	1	64	1	0	0	0	0	1	0	0	0	9645	1116	39	1	1461	1	MKI67	10	129901783	Missense_Mutation	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	17254282	129901783	5632964	38	4483											
NLRP6	171389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	281495	281495	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacagggacagggctgcccCggagtggcaccagaggtgac	18	11	0	2	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_138329	exon4	c.C1761T	p.P587P	CTGCCCCGGAGTG		50	12	0.24	51	0	0				0	0					T	281495	C	T	281495	2	4	64	1	0	0	0	0	0	0	0	1	10527	639	23	1		1	NLRP6	11	281495	Silent	SNP	C	TCGA-2G-AALF-01A-11D-A42Y-10		281495	134725021	39	4484											
MUC6	4588	bcgsc.ca	37	chr11	1016801	1016801	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgggaagtgtggtctgaggGtgtgatggggttggataggt	22	1	1	2	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	MUC6	NM_005961	exon31	c.C6000G	p.H2000Q	CTGAGGGTGTGAT		390	16	0.04	405	8	0.0197530864		408		0	0					C	1016801	G	C	1016801	3	2	64	1	0	0	0	0	1	0	0	0	10027	1252	44	5	1331	5	MUC6	11	1016801	Missense_Mutation	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	735306	1016801	133989715	40	4485											
MUC2	4583	mdanderson.org	37	chr11	1093434	1093434	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acacccatcaccaccaccacCacggtgaccccaaccccgac	4	23	1	1	rs12786901	bycluster	TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_002457	exon30	c.C5253T	p.T1751T	CACCACCACGGTG		26	5	0.19	33	1	0.0303030303				0	0					T	1093434	C	T	1093434	2	4	64	1	0	0	0	0	0	0	0	1	10022	581	21	3		3	MUC2	11	1093434	Silent	SNP	C	TCGA-2G-AALF-01A-11D-A42Y-10	76633	1093434	133913082	41	4486											
FOLH1	2346	bcgsc.ca	37	chr11	49204790	49204790	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaattccacgcctataagcAtattctgaaaaaaaaaattg	5	8	1	1	rs76509850	bycluster;byfrequency	TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	FOLH1	NM_004476	exon7	c.T831C	p.Y277Y	ATAAGCATATTCT		137	12	0.09	110	0	0		141		0	0					G	49204790	A	G	49204790	2	3	64	1	0	0	0	0	0	0	0	1	6011	224	8	4		4	FOLH1	11	49204790	Silent	SNP	A	TCGA-2G-AALF-01A-11D-A42Y-10	48111356	49204790	85801726	42	4487											
SLC22A20	0	broad.mit.edu	37	chr11	64989730	64989730	+	RNA	DEL	C	C	-													gccaccgtgcctggccaagtCctctgtagtctttaaatact					novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	SLC22A20	.	.	.	.	CCAAGTCCTCTGT		6	2	0.33	6	0	0		36		0	0					-	64989730	C	-	64989730	6	5	64	0	1	1	0	1	0	0	0	0	14506	870	30	0		0	SLC22A20	11	64989730	RNA	DEL	C	TCGA-2G-AALF-01A-11D-A42Y-10	15784940	64989730	70016786	43	4488											
LTBP3	4054	mdanderson.org	37	chr11	65306612	65306612	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcgcgcgaagccggctttgCagacgcagcggaaggagccg	17	12	0	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001130144	exon28	c.G3851A	p.C1284Y	GCTTTGCAGACGC		11	3	0.27	19	0	0				37	0	0				T	65306612	C	T	65306612	3	4	64	1	0	0	0	0	1	0	0	0	9119	710	25	2	64	2	LTBP3	11	65306612	Missense_Mutation	SNP	C	TCGA-2G-AALF-01A-11D-A42Y-10	316882	65306612	69699904	44	4489											
TECTA	7007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	121028809	121028809	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catctgccagaaactgcccgAcatctccttccagcttatca	5	16	3	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_005422	exon13	c.A4565G	p.D1522G	TGCCCGACATCTC		88	66	0.75	115	0	0				0	0					G	121028809	A	G	121028809	3	3	64	1	0	0	0	0	1	0	0	0	15805	275	10	4	4615	4	TECTA	11	121028809	Missense_Mutation	SNP	A	TCGA-2G-AALF-01A-11D-A42Y-10	55722197	121028809	13977707	45	4490											
ERC1	23085	broad.mit.edu	37	chr12	1292505	1292505	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcatcctcaggactgaaaaAggactcacggcttaagacac	10	11	2	2	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	ERC1	NM_178040	exon11	c.A2075G	p.K692R	TGAAAAAGGACTC		731	7	0.01	314	0	0		95		2	0	0				G	1292505	A	G	1292505	3	3	64	1	0	0	0	0	1	0	0	0	5238	72	3	4	2113	4	ERC1	12	1292505	Missense_Mutation	SNP	A	TCGA-2G-AALF-01A-11D-A42Y-10		1292505	132559390	46	4491											
DDX11	1663	broad.mit.edu	37	chr12	31238044	31238044	+	Frame_Shift_Del	DEL	A	A	-													aatacgagagtgatgaggagAaaaaggtggcgagcaggtga					novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	DDX11	NM_030653	exon5	c.622delA	p.K208fs	GAGGAGAAAAAGG		634	8	0.01	319	0	0		188		16	0	0				-	31238044	A	-	31238044	7	5	64	1	0	1	0	1	0	0	0	0	4366	247	9	0	636	0	DDX11	12	31238044	Frame_Shift_Del	DEL	A	TCGA-2G-AALF-01A-11D-A42Y-10	29945539	31238044	102613851	47	4492											
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	57600263	57600263	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgcttctccaggctctgaGtaccaggtcctgtacatcgc	9	14	2	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_002332	exon76	c.G11598A	p.E3866E	CTCTGAGTACCAG		49	27	0.55	62	0	0				19	9	0.47				A	57600263	G	A	57600263	2	1	64	1	0	0	0	0	0	0	0	1	8995	1020	36	3		3	LRP1	12	57600263	Silent	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	26362219	57600263	76251632	48	4493											
DCT	1638	ucsc.edu	37	chr13	95131234	95131234	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgcacttgcaggtccgGtggaagaattttcttggcca	12	10	1	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	DCT	NM_001129889	exon1	c.C276T	p.H92H	GGTCCGGTGGAAG		40	4	0.1	43	0	0		186		0	0					A	95131234	G	A	95131234	2	1	64	1	0	0	0	0	0	0	0	1	4327	1252	44	3		3	DCT	13	95131234	Silent	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10		95131234	20038644	49	4494											
KLF13	51621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr15	31619961	31619961	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagtttacgggaaatcttcGcacctcaaggcgcacctgag	10	11	2	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_015995	exon1	c.G546C	p.S182S	ATCTTCGCACCTC		66	17	0.26	80	0	0				2	0	0				C	31619961	G	C	31619961	2	2	64	1	0	0	0	0	0	0	0	1	8383	1074	38	5		5	KLF13	15	31619961	Silent	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10		31619961	70911431	50	4495											
CORO2B	10391	mdanderson.org	37	chr15	69011560	69011560	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	accccggatgaatggctgggAggcatcaaccgaggtaccac	13	12	1	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_006091	exon10	c.A1158G	p.G386G	GCTGGGAGGCATC		56	4	0.07	54	0	0				0	0					G	69011560	A	G	69011560	2	3	64	1	0	0	0	0	0	0	0	1	3780	291	11	4		4	CORO2B	15	69011560	Silent	SNP	A	TCGA-2G-AALF-01A-11D-A42Y-10	37391599	69011560	33519832	51	4496											
IL16	3603	mdanderson.org	37	chr15	81598276	81598276	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgtttccaaatgggctgGcctcccaggaagggactatt	13	9	0	0	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001172128	exon17	c.G3448T	p.A1150S	GGGCTGGCCTCCC		46	3	0.07	76	0	0				22	0	0				T	81598276	G	T	81598276	3	4	64	1	0	0	0	0	1	0	0	0	7676	1203	42	2	3510	2	IL16	15	81598276	Missense_Mutation	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	12586716	81598276	20933116	52	4497											
SEMA4B	10509	hgsc.bcm.edu	37	chr15	90764683	90764683	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaaagccttcgccccaccaAgaccgagagctccctcaact	6	19	1	2	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_020210	exon7	c.A680G	p.K227R	CCACCAAGACCGA		95	4	0.04	140	0	0				6	0	0				G	90764683	A	G	90764683	3	3	64	1	0	0	0	0	1	0	0	0	14085	72	3	4	702	4	SEMA4B	15	90764683	Missense_Mutation	SNP	A	TCGA-2G-AALF-01A-11D-A42Y-10	9166407	90764683	11766709	53	4498											
PAQR4	124222	mdanderson.org	37	chr16	3021898	3021898	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcctgcagctgcacgccggCgtcgtgcccgacctgctctg	12	17	1	0	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	PAQR4,bladder,carcinoma,0,1	PAQR4	NM_152341	exon3	c.C771T	p.G257G	CGCCGGCGTCGTG		35	3	0.09	23	0	0		0	1	21	0	0				T	3021898	C	T	3021898	2	4	64	1	0	0	0	0	0	0	0	1	11483	755	27	1		1	PAQR4	16	3021898	Silent	SNP	C	TCGA-2G-AALF-01A-11D-A42Y-10		3021898	87332855	54	4499											
MC1R	4157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	89985992	89985992	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccggtgcactggtggcccGggctgcggtgctgcagcagc	19	13	0	0	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_002386	exon1	c.G326A	p.R109Q	TGGCCCGGGCTGC		51	10	0.2	58	0	0				5	2	0.4				A	89985992	G	A	89985992	3	1	64	1	0	0	0	0	1	0	0	0	9412	1116	39	1	328	1	MC1R	16	89985992	Missense_Mutation	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	86964094	89985992	368761	55	4500											
DBNDD1	79007	mdanderson.org	37	chr16	90075813	90075813	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggacgcccagcgcagcctgCggcacctcagcctccttaac	11	18	1	0	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	DBNDD1,rectum,carcinoma,-2,1	DBNDD1	NM_024043	exon2	c.G117A	p.P39P	AGCCTGCGGCACC		22	3	0.14	43	0	0		-2	1	8	0	0				T	90075813	C	T	90075813	2	4	64	1	0	0	0	0	0	0	0	1	4277	755	27	1		1	DBNDD1	16	90075813	Silent	SNP	C	TCGA-2G-AALF-01A-11D-A42Y-10	89821	90075813	278940	56	4501											
PEMT	10400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	17480330	17480330	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagcagccgggtcataacGcagaagtctgcctgcaggga	13	13	2	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001267552	exon2	c.C108T	p.C36C	CATAACGCAGAAG		52	16	0.31	52	0	0				81	41	0.51				A	17480330	G	A	17480330	2	1	64	1	0	0	0	0	0	0	0	1	11772	1079	38	1		1	PEMT	17	17480330	Silent	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10		17480330	63714880	57	4502											
SLC47A2	146802	mdanderson.org	37	chr17	19610016	19610016	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaacacagatcatgagcatGctggggacagccagggagaa	13	9	2	3	rs199838072	alternate_allele	TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_152908	exon9	c.C894A	p.S298R	GAGCATGCTGGGG		36	3	0.08	40	0	0				0	0					T	19610016	G	T	19610016	3	4	64	1	0	0	0	0	1	0	0	0	14702	1310	46	2	950	2	SLC47A2	17	19610016	Missense_Mutation	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	2129686	19610016	61585194	58	4503											
SLC47A2	146802	mdanderson.org	37	chr17	19618516	19618516	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtagatcataaaagtcagCacctggaacaggaactggag	11	7	2	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001099646	exon2	c.G138A	p.V46V	AGTCAGCACCTGG		25	3	0.12	21	0	0				0	0					T	19618516	C	T	19618516	2	4	64	1	0	0	0	0	0	0	0	1	14702	697	25	2		2	SLC47A2	17	19618516	Silent	SNP	C	TCGA-2G-AALF-01A-11D-A42Y-10	8500	19618516	61576694	59	4504											
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	29164229	29164229	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatttttatttcagaatgaAattcaccagaattagtactc	4	6	2	3	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_024857	exon3	c.A1973C	p.K658T	GAATGAAATTCAC		435	90	0.21	248	0	0				0	0					C	29164229	A	C	29164229	3	2	64	1	0	0	0	0	1	0	0	0	1075	14	1	4	1983	4	ATAD5	17	29164229	Missense_Mutation	SNP	A	TCGA-2G-AALF-01A-11D-A42Y-10	9545713	29164229	52030981	60	4505											
LRRC46	90506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	45914165	45914165	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaggcacagggagcaccgGcaacagacggccctgacaga	14	13	0	3	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_033413	exon8	c.G645A	p.R215R	GCACCGGCAACAG		80	24	0.3	67	0	0				4	2	0.5				A	45914165	G	A	45914165	2	1	64	1	0	0	0	0	0	0	0	1	9047	1190	42	2		2	LRRC46	17	45914165	Silent	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	16749936	45914165	35281045	61	4506											
TNRC6C	57690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	76075489	76075489	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgcagataccgagtggcaAtctgggtatgtttggcaata	13	6	1	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_018996	exon11	c.A3224G	p.N1075S	GTGGCAATCTGGG		94	24	0.26	70	0	0				0	0					G	76075489	A	G	76075489	3	3	64	1	0	0	0	0	1	0	0	0	16401	101	4	4	3254	4	TNRC6C	17	76075489	Missense_Mutation	SNP	A	TCGA-2G-AALF-01A-11D-A42Y-10	30161324	76075489	5119721	62	4507											
RNF213	57674	mdanderson.org	37	chr17	78360657	78360657	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcggcagatcgtcagccGcttcctccagggcaagcccc	11	17	2	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001256071	exon63	c.G14888T	p.R4963L	TCAGCCGCTTCCT		40	3	0.08	56	0	0				24	0	0				T	78360657	G	T	78360657	3	4	64	1	0	0	0	0	1	0	0	0	13528	1087	38	1	15453	1	RNF213	17	78360657	Missense_Mutation	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	2285168	78360657	2834553	63	4508											
ABCA7	10347	mdanderson.org	37	chr19	1062286	1062286	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgcttgcgcgcctgcgcGgtgtcccggaggcccaggtt	16	14	0	0	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	ABCA7,NS,carcinoma,0,1	ABCA7	NM_019112	exon42	c.G5686T	p.G1896C	CTGCGCGGTGTCC		29	3	0.1	31	0	0		0	1	46	0	0				T	1062286	G	T	1062286	3	4	64	1	0	0	0	0	1	0	0	0	37	1116	39	1	5848	1	ABCA7	19	1062286	Missense_Mutation	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10		1062286	58066697	64	4509											
ICAM3	3385	mdanderson.org	37	chr19	10450225	10450225	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggtctcacctggggtcagCagacagcagaccagcagagt	13	12	2	3	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_002162	exon1	c.G66A	p.L22L	GGTCAGCAGACAG		38	3	0.08	42	0	0				16	0	0				T	10450225	C	T	10450225	2	4	64	1	0	0	0	0	0	0	0	1	7524	697	25	2		2	ICAM3	19	10450225	Silent	SNP	C	TCGA-2G-AALF-01A-11D-A42Y-10	9387939	10450225	48678758	65	4510											
TYK2	7297	bcgsc.ca	37	chr19	10464862	10464862	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccaccatctcgccagtgcCgtcgttggtcggatcgtagc	12	15	1	0	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	TYK2	NM_003331	exon20	c.G2764A	p.G922S	CAGTGCCGTCGTT		58	4	0.07	58	0	0		126		56	0	0				T	10464862	C	T	10464862	3	4	64	1	0	0	0	0	1	0	0	0	16871	652	23	1	823	1	TYK2	19	10464862	Missense_Mutation	SNP	C	TCGA-2G-AALF-01A-11D-A42Y-10	14637	10464862	48664121	66	4511											
NUDT19	390916	broad.mit.edu;mdanderson.org	37	chr19	33183483	33183483	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggctcacccctttcttgcGgggcaccactcgccgctttg	10	17	2	0	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	NUDT19	NM_001105570	exon1	c.G617T	p.R206L	TCTTGCGGGGCAC		52	3	0.06	49	0	0		15		0	0					T	33183483	G	T	33183483	3	4	64	1	0	0	0	0	1	0	0	0	10783	1116	39	1	619	1	NUDT19	19	33183483	Missense_Mutation	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	22718621	33183483	25945500	67	4512											
TEAD2	8463	mdanderson.org	37	chr19	49844664	49844664	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacataggcggtgcagagcaGcagttcctgggtgtctctgt	15	9	1	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001256661	exon13	c.C1273A	p.L425M	AGAGCAGCAGTTC		41	3	0.07	38	0	0				103	0	0				T	49844664	G	T	49844664	3	4	64	1	0	0	0	0	1	0	0	0	15797	962	34	2	86	2	TEAD2	19	49844664	Missense_Mutation	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10	16661181	49844664	9284319	68	4513											
YTHDF1	54915	hgsc.bcm.edu	37	chr20	61833918	61833918	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaccccggcactggtgccGtagtccacgggggacttcat	13	14	1	1	rs368566767		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_017798	exon4	c.C1374T	p.Y458Y	GGTGCCGTAGTCC		90	4	0.04	84	0	0				44	0	0				A	61833918	G	A	61833918	2	1	64	1	0	0	0	0	0	0	0	1	17557	1140	40	1		1	YTHDF1	20	61833918	Silent	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10		61833918	1191602	69	4514											
BAGE	85319	broad.mit.edu	37	chr21	11087107	11087108	+	RNA	INS	-	-	A													acagaatgagactccatctcINSaaaaaaaaattaataaaaat					rs55727275	bycluster	TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	.	.	.	.	CCATCTCAAAAAA		7	3	0.43	7	0	0				0	0					A	11087108	-	A	11087107	6	5	64	0	1	1	1	0	0	0	0	0	1289	841	29	0		0	BAGE	21	11087107	RNA	INS	-	TCGA-2G-AALF-01A-11D-A42Y-10		11087107	37042788	70	4515											
LRRC3	81543	mdanderson.org	37	chr21	45876718	45876718	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtccccgaggacatcccggCcaacaccgtgctcctgaagc	11	17	0	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_030891	exon2	c.C191T	p.A64V	TCCCGGCCAACAC		46	3	0.07	44	0	0				5	0	0				T	45876718	C	T	45876718	3	4	64	1	0	0	0	0	1	0	0	0	9028	739	26	2	193	2	LRRC3	21	45876718	Missense_Mutation	SNP	C	TCGA-2G-AALF-01A-11D-A42Y-10	34789611	45876718	2253177	71	4516											
RFPL2	10739	bcgsc.ca	37	chr22	32589088	32589088	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaatgcacttgaggcagacGgcgcatccacactccaggga	11	12	0	2	rs77728135	bycluster	TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	RFPL2	NM_001098527	exon4	c.C357T	p.A119A	GCAGACGGCGCAT		213	9	0.04	161	2	0.0124223602		81		18	0	0				A	32589088	G	A	32589088	2	1	64	1	0	0	0	0	0	0	0	1	13305	1103	39	1		1	RFPL2	22	32589088	Silent	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10		32589088	18715478	72	4517											
CACNA1I	8911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	40055123	40055123	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttcatcttcatcttcaggTgagcctgccctgctgggggc	11	13	6	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_021096	exon12	c.2330+2T>G	.	TTCAGGTGAGCCT		53	6	0.11	51	0	0				0	0					G	40055123	T	G	40055123	5	3	64	1	0	0	0	0	0	0	1	0	2564	1710	59	4	2378	4	CACNA1I	22	40055123	Splice_Site	SNP	T	TCGA-2G-AALF-01A-11D-A42Y-10	7466035	40055123	11249443	73	4518											
RBM10	8241	broad.mit.edu;mdanderson.org	37	chrX	47030579	47030579	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaggaggaggaggaggaGgaggatgaggaggaggagga	27	0	0	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	RBM10	NM_001204468	exon4	c.G549T	p.E183D	GGAGGAGGAGGAT		56	4	0.07	63	0	0		117		1	0	0				T	47030579	G	T	47030579	3	4	64	1	0	0	0	0	1	0	0	0	13162	991	35	3	364	3	RBM10	23	47030579	Missense_Mutation	SNP	G	TCGA-2G-AALF-01A-11D-A42Y-10		47030579	108239981	74	4519											
RPS6KA6	27330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	83361424	83361424	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtatgcatcgcttgcaaacAgagtaggagccaacaccaat	9	10	0	1	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_014496	exon15	c.T1314C	p.S438S	GCAAACAGAGTAG		118	54	0.46	97	0	0				0	0					G	83361424	A	G	83361424	2	3	64	1	0	0	0	0	0	0	0	1	13706	175	7	4		4	RPS6KA6	23	83361424	Silent	SNP	A	TCGA-2G-AALF-01A-11D-A42Y-10	36330845	83361424	71909136	75	4520											
PDZD4	57595	mdanderson.org	37	chrX	153071022	153071022	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttcctggctcaggatggCcaccgcctcttcccggttct	9	17	4	0	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_032512	exon6	c.G589A	p.A197T	GGATGGCCACCGC		35	3	0.09	28	0	0				0	0					T	153071022	C	T	153071022	3	4	64	1	0	0	0	0	1	0	0	0	11749	739	26	2	1732	2	PDZD4	23	153071022	Missense_Mutation	SNP	C	TCGA-2G-AALF-01A-11D-A42Y-10	69709598	153071022	2199538	76	4521											
ALDH4A1	8659	mdanderson.org	37	chr1	19216533	19216533	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agggcatctcgctcagggctGccctgcgtgaaggctaagac	14	12	2	2	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_003748	exon2	c.C129A	p.G43G	AGGGCTGCCCTGC		31	3	0.1	34	0	0				1	0	0				T	19216533	G	T	19216533	2	4	65	1	0	0	0	0	0	0	0	1	498	1306	46	2		2	ALDH4A1	1	19216533	Silent	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10		19216533	230034088	1	4522											
HMGCL	3155	broad.mit.edu	37	chr1	24151935	24151935	+	Translation_Start_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatcccccgcggcagtccaGctgggccccgcgtgaccgat	13	17	0	1	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	HMGCL	.	.	.	.	AGTCCAGCTGGGC		51	3	0.06	84	0	0		22		0	0					T	24151935	G	T	24151935	1	4	65	1	0	0	0	0	0	0	0	0	7269	986	34	2		2	HMGCL	1	24151935	Translation_Start_Site	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	4935402	24151935	225098686	2	4523											
MACF1	23499	broad.mit.edu	37	chr1	39783026	39783026	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggagcgctatcaggaaaaAggctcccagctgcaggagcg	14	10	1	0	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	MACF1	NM_012090	exon30	c.A3744G	p.K1248K	GGAAAAAGGCTCC		114	3	0.03	120	0	0		909		0	0					G	39783026	A	G	39783026	2	3	65	1	0	0	0	0	0	0	0	1	9189	69	3	4		4	MACF1	1	39783026	Silent	SNP	A	TCGA-2G-AALG-01A-11D-A42Y-10	15631091	39783026	209467595	3	4524											
OVGP1	5016	bcgsc.ca	37	chr1	111957533	111957533	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgactcacaggggtcacagaCtgatgacccacaggggtcag	13	11	3	4	rs112145355	bycluster	TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	OVGP1	NM_002557	exon11	c.G1590A	p.Q530Q	CACAGACTGATGA		147	29	0.2	120	1	0.0083333333		177		3	0	0				T	111957533	C	T	111957533	2	4	65	1	0	0	0	0	0	0	0	1	11371	564	20	3		3	OVGP1	1	111957533	Silent	SNP	C	TCGA-2G-AALG-01A-11D-A42Y-10	72174507	111957533	137293088	4	4525			1	11		2	2	24	N	T_C	4.680615e-05
OVGP1	5016	bcgsc.ca	37	chr1	111957556	111957556	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgacccacaggggtcagggTcttttccccaggggtcacag	13	12	3	1	rs140282461		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	OVGP1	NM_002557	exon11	c.A1567G	p.T523A	TCAGGGTCTTTTC		131	10	0.08	126	0	0		177		6	0	0				C	111957556	T	C	111957556	3	2	65	1	0	0	0	0	1	0	0	0	11371	1667	58	4	473	4	OVGP1	1	111957556	Missense_Mutation	SNP	T	TCGA-2G-AALG-01A-11D-A42Y-10	23	111957556	137293065	5	4526			1	11		2	2	24	N	T_C	4.680615e-05
DENND4B	9909	broad.mit.edu	37	chr1	153914771	153914771	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatgggcaggcagaagacGggcactgactcgggcagcgg	17	12	0	3	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	DENND4B	NM_014856	exon5	c.C702A	p.P234P	GAAGACGGGCACT		61	3	0.05	62	0	0		210		2	0	0				T	153914771	G	T	153914771	2	4	65	1	0	0	0	0	0	0	0	1	4462	1103	39	1		1	DENND4B	1	153914771	Silent	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	41957215	153914771	95335850	6	4527											
RGL1	23179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	183816714	183816714	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atacaggttgaaggggaccaGctgcctccaggacacacagt	12	11	0	1	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_015149	exon4	c.G258A	p.Q86Q	GGACCAGCTGCCT		95	21	0.22	88	0	0				0	0					A	183816714	G	A	183816714	2	1	65	1	0	0	0	0	0	0	0	1	13327	962	34	2		2	RGL1	1	183816714	Silent	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	29901943	183816714	65433907	7	4528											
ADCY3	109	mdanderson.org	37	chr2	25050963	25050963	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatacttggggttctccaggCagctgccctccgtttccatc	9	14	1	0	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_004036	exon13	c.G2240A	p.C747Y	TCCAGGCAGCTGC		101	5	0.05	80	0	0				17	0	0				T	25050963	C	T	25050963	3	4	65	1	0	0	0	0	1	0	0	0	294	710	25	2	1230	2	ADCY3	2	25050963	Missense_Mutation	SNP	C	TCGA-2G-AALG-01A-11D-A42Y-10		25050963	218148410	8	4529											
RNF103	7844	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	86849821	86849821	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcccggacatccttcttctcGggcaaccctgagtagcccaa	8	16	2	1	rs139047742		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_005667	exon1	c.C189G	p.P63P	CTTCTCGGGCAAC		287	24	0.08	217	0	0	0			4	0	0				C	86849821	G	C	86849821	2	2	65	1	0	0	0	0	0	0	0	1	13474	1103	39	5		5	RNF103	2	86849821	Silent	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	61798858	86849821	156349552	9	4530											
DYNC1LI1	51143	broad.mit.edu	37	chr3	32582556	32582556	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caaactactagtactggaatGcccaagttatgtgtaagtgt	9	7	0	0	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	DYNC1LI1	NM_016141	exon5	c.C711A	p.G237G	TGGAATGCCCAAG		134	4	0.03	136	0	0		23		30	1	0.03				T	32582556	G	T	32582556	2	4	65	1	0	0	0	0	0	0	0	1	4870	1306	46	2		2	DYNC1LI1	3	32582556	Silent	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10		32582556	165439874	10	4531											
ADAMTS9	56999	broad.mit.edu	37	chr3	64527581	64527581	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtggcataagtggctgggTtggtcctcattggttaaaca	14	6	1	0	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	ADAMTS9	NM_182920	exon33	c.A5130C	p.Q1710H	GCTGGGTTGGTCC		169	33	0.2	185	23	0.1243243243		206		4	0	0				G	64527581	T	G	64527581	3	3	65	1	0	0	0	0	1	0	0	0	272	1722	60	4	705	4	ADAMTS9	3	64527581	Missense_Mutation	SNP	T	TCGA-2G-AALG-01A-11D-A42Y-10	31945025	64527581	133494849	11	4532											
JAKMIP1	152789	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	6107587	6107589	+	In_Frame_Del	DEL	CTC	CTC	-													gcctgcagctccttggtcttCtcctcatgcagcttggcctt					novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	CTC	CTC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	JAKMIP1	NM_144720	exon3	c.236_238del	p.79_80del	GGTCTTCTCCTCA		54	12	0.22	72	0	0		250		1	0	0				-	6107589	CTC	-	6107587	7	5	65	1	0	1	0	1	0	0	0	0	7983	912	32	0	2409	0	JAKMIP1	4	6107587	In_Frame_Del	DEL	CTC	TCGA-2G-AALG-01A-11D-A42Y-10		6107587	185046689	12	4533											
RXRB	6257	mdanderson.org	37	chr6	33168217	33168217	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acactgccctgcggcatgccGctgagggaggaagggcgggc	18	12	0	1	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_021976	exon1	c.C37T	p.R13W	CATGCCGCTGAGG		38	3	0.08	18	0	0				9	0	0				A	33168217	G	A	33168217	3	1	65	1	0	0	0	0	1	0	0	0	13815	1086	38	1	1604	1	RXRB	6	33168217	Missense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10		33168217	137946850	13	4534											
CRIP3	401262	mdanderson.org	37	chr6	43274254	43274254	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtcttcatatggggaggGcctttaaaggggaagaggcc	15	6	2	1	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_206922	exon5	c.C330A	p.S110R	GGGAGGGCCTTTA		117	5	0.04	120	0	0				0	0					T	43274254	G	T	43274254	3	4	65	1	0	0	0	0	1	0	0	0	3899	1217	42	2	300	2	CRIP3	6	43274254	Missense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	10106037	43274254	127840813	14	4535											
TFR2	7036	mdanderson.org	37	chr7	100238346	100238346	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcccctcccccaggaactGcaggaacatggcctggaggt	13	15	0	0	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	TFR2,NS,carcinoma,+2,1	TFR2	NM_003227	exon3	c.C436A	p.Q146K	GGAACTGCAGGAA		48	3	0.06	45	0	0		2	1	0	0					T	100238346	G	T	100238346	3	4	65	1	0	0	0	0	1	0	0	0	15870	1328	46	2	2033	2	TFR2	7	100238346	Missense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10		100238346	58900317	15	4536											
PXDNL	137902	broad.mit.edu	37	chr8	52232504	52232504	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcggtctctgcaaactggacAgcaggttcctttcaccaatt	8	12	2	0	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	PXDNL_ENST00000356297,larynx,carcinoma,+1,1	PXDNL	NM_144651	exon23	c.T4339A	p.C1447S	CTGGACAGCAGGT		191	4	0.02	140	0	0		414	1	3	0	0				T	52232504	A	T	52232504	3	4	65	1	0	0	0	0	1	0	0	0	12899	188	7	5	56	5	PXDNL	8	52232504	Missense_Mutation	SNP	A	TCGA-2G-AALG-01A-11D-A42Y-10		52232504	94131518	16	4537											
SLC39A4	55630	mdanderson.org	37	chr8	145641504	145641504	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagacaagtgagcaggggcGctgggcccaccagggagggg	20	9	0	2	rs201917734	bycluster	TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_017767	exon1	c.C89T	p.A30V	AGGGGCGCTGGGC		23	2	0.09	17	0	0				6	0	0				A	145641504	G	A	145641504	3	1	65	1	0	0	0	0	1	0	0	0	14674	1087	38	1	1823	1	SLC39A4	8	145641504	Missense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	93409000	145641504	722518	17	4538											
MLLT3	4300	mdanderson.org	37	chr9	20414370	20414370	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgctgctgctgctgctGctgctactgctgctgctgct	12	14	0	0	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_004529	exon5	c.C474T	p.S158S	GCTGCTGCTGCTA		33	3	0.09	30	0	0				2	0	0				A	20414370	G	A	20414370	2	1	65	1	0	0	0	0	0	0	0	1	9675	1310	46	2		2	MLLT3	9	20414370	Silent	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10		20414370	120799061	18	4539											
TLN1	7094	mdanderson.org	37	chr9	35711280	35711280	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagccagctgactcttgaGgttaggggcagcagggtccg	16	10	1	2	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_006289	exon30	c.C3991A	p.L1331I	TCTTGAGGTTAGG		53	3	0.06	71	0	0				18	0	0				T	35711280	G	T	35711280	3	4	65	1	0	0	0	0	1	0	0	0	16006	1000	35	3	3746	3	TLN1	9	35711280	Missense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	15296910	35711280	105502151	19	4540											
PTCH1	5727	broad.mit.edu;bcgsc.ca	37	chr9	98209504	98209524	+	In_Frame_Del	DEL	CGGGCCCCGCGAGGGCCCCAG	CGGGCCCCGCGAGGGCCCCAG	-													ggttccgagggttgtgagaaCgggccccgcgagggccccag					novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	CGGGCCCCGCGAGGGCCCCAG	CGGGCCCCGCGAGGGCCCCAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	PTCH1	NM_000264	exon23	c.4014_4034del	p.1338_1345del	TGAGAACGGGCCC		58	14	0.24	72	0	0		1850		8	0	0				-	98209524	CGGGCCCCGCGAGGGCCCCAG	-	98209504	7	5	65	1	0	1	0	1	0	0	0	0	12778	536	19	0	313	0	PTCH1	9	98209504	In_Frame_Del	DEL	CGGGCCCCGCGAGGGCCCCAG	TCGA-2G-AALG-01A-11D-A42Y-10	62498224	98209504	43003927	20	4541											
GOLGA2	2801	hgsc.bcm.edu;bcgsc.ca	37	chr9	131020818	131020818	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctcctcctcAtcctcctcctcctcccggtc	2	25	1	0	rs199744363		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_004486	exon21	c.T2124G	p.D708E	CTCCTCATCCTCC		22	4	0.18	41	0	0				0	0					C	131020818	A	C	131020818	3	2	65	1	0	0	0	0	1	0	0	0	6593	214	8	4	908	4	GOLGA2	9	131020818	Missense_Mutation	SNP	A	TCGA-2G-AALG-01A-11D-A42Y-10	32811314	131020818	10192613	21	4542											
SPTAN1	6709	mdanderson.org	37	chr9	131344818	131344818	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actatgcaatggaagatgtgGccactcgccgagatgctgta	12	9	0	2	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_003127	exon13	c.G1633T	p.A545S	GATGTGGCCACTC		40	3	0.08	59	0	0				4	0	0				T	131344818	G	T	131344818	3	4	65	1	0	0	0	0	1	0	0	0	15172	1203	42	2	1679	2	SPTAN1	9	131344818	Missense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	324000	131344818	9868613	22	4543											
ENTPD2	954	mdanderson.org	37	chr9	139943484	139943484	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgaacatggccccggcgcagTagtcggccaggcgggcccgt	16	15	0	0	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_203468	exon8	c.A1193G	p.Y398C	GCGCAGTAGTCGG		9	1	0.11	17	0	0				21	0	0				C	139943484	T	C	139943484	3	2	65	1	0	0	0	0	1	0	0	0	5167	1638	57	4	302	4	ENTPD2	9	139943484	Missense_Mutation	SNP	T	TCGA-2G-AALG-01A-11D-A42Y-10	8598666	139943484	1269947	23	4544											
ANAPC2	29882	mdanderson.org	37	chr9	140069899	140069899	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acgggcatcttcaccgccttGctcagttcctccagggtcca	9	16	3	0	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_013366	exon12	c.C2046T	p.S682S	CGCCTTGCTCAGT		36	3	0.08	37	0	0				123	0	0				A	140069899	G	A	140069899	2	1	65	1	0	0	0	0	0	0	0	1	599	1310	46	2		2	ANAPC2	9	140069899	Silent	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	126415	140069899	1143532	24	4545											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggacaagggagaggtcttGatgtttttctgtgatgttga	15	3	2	4	rs79064394	bycluster	TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	CSGALNACT2,NS,carcinoma,0,5	CSGALNACT2	NM_018590	exon5	c.G1086T	p.L362F	GGTCTTGATGTTT		135	5	0.04	151	1	0.0066225166		67	5	7	0	0				T	43659419	G	T	43659419	3	4	65	1	0	0	0	0	1	0	0	0	3964	1281	45	3	1100	3	CSGALNACT2	10	43659419	Missense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10		43659419	91875328	25	4546											
PGBD3	0	broad.mit.edu	37	chr10	50724864	50724864	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcctcctccttgatggtggAggttgctgcacagtaaacgt	11	10	0	1	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	PGBD3	NM_170753	exon2	c.G297C	p.M99I	TGGTGGAGGTTGC		137	4	0.03	150	0	0		58		1	0	0				G	50724864	A	G	50724864	2	3	65	1	0	0	0	0	0	0	0	1	11829	291	11	4		4	PGBD3	10	50724864	Silent	SNP	A	TCGA-2G-AALG-01A-11D-A42Y-10	7065445	50724864	84809883	26	4547											
RRP12	23223	mdanderson.org	37	chr10	99133414	99133414	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacgctcgctgatggccatGcccagcgtccgtgccagccc	13	17	0	1	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_015179	exon17	c.C1944A	p.G648G	GGCCATGCCCAGC		50	3	0.06	66	1	0.0151515152				10	0	0				T	99133414	G	T	99133414	2	4	65	1	0	0	0	0	0	0	0	1	13737	1306	46	2		2	RRP12	10	99133414	Silent	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	48408550	99133414	36401333	27	4548											
MUC2	4583	hgsc.bcm.edu	37	chr11	1093462	1093462	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccaaccccgacacccaccGgcacacagaccccaaccacg	5	24	0	1	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	MUC2_ENST00000441003,NS,carcinoma,0,2	MUC2_ENST00000441003	NM_002457	exon30	c.G5281A	p.G1761S	CCCACCGGCACAC		44	2	0.05	36	0	0		0	2	0	0					A	1093462	G	A	1093462	3	1	65	1	0	0	0	0	1	0	0	0	10022	1116	39	1	5399	1	MUC2	11	1093462	Missense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10		1093462	133913054	28	4549											
PRMT3	10196	mdanderson.org	37	chr11	20409297	20409297	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggggcaccacagccatgtGctcgttagcgtcaggcgcta	13	13	1	0	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_001145166	exon1	c.G5T	p.C2F	CCATGTGCTCGTT		37	3	0.08	31	0	0				2	0	0				T	20409297	G	T	20409297	3	4	65	1	0	0	0	0	1	0	0	0	12589	1319	46	2	7	2	PRMT3	11	20409297	Missense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	19315835	20409297	114597219	29	4550											
ATN1	1822	broad.mit.edu	37	chr12	7045069	7045069	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caggctcctcctggggccccTccccctcacccacagctcta	7	22	2	0	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	ATN1	NM_001007026	exon5	c.T639C	p.P213P	GGCCCCTCCCCCT		260	15	0.06	125	4	0.032		95		85	1	0.01				C	7045069	T	C	7045069	2	2	65	1	0	0	0	0	0	0	0	1	1110	1538	54	4		4	ATN1	12	7045069	Silent	SNP	T	TCGA-2G-AALG-01A-11D-A42Y-10		7045069	126806826	30	4551											
NANOG	79923	broad.mit.edu	37	chr12	7947381	7947382	+	Frame_Shift_Del	DEL	AT	AT	-													gagcaaccagacctggaacaAttcaacctggagcaaccaga					novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	AT	AT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	NANOG	NM_024865	exon4	c.608_609del	p.203_203del	GGAACAATTCAAC		732	17	0.02	279	0	0		30		0	0					-	7947382	AT	-	7947381	7	5	65	1	0	1	0	1	0	0	0	0	10197	101	4	0	622	0	NANOG	12	7947381	Frame_Shift_Del	DEL	AT	TCGA-2G-AALG-01A-11D-A42Y-10	902312	7947381	125904514	31	4552	10	2									
NANOG	79923	broad.mit.edu	37	chr12	7947386	7947387	+	Frame_Shift_Ins	INS	-	-	GT													ccagacctggaacaattcaaINScctggagcaaccagacccag					novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	NANOG	NM_024865	exon4	c.613_614insGT	p.T205fs	AATTCAACCTGGA		674	17	0.03	265	0	0		30		0	0					GT	7947387	-	GT	7947386	7	5	65	1	0	1	1	0	0	0	0	0	10197	43	2	0	627	0	NANOG	12	7947386	Frame_Shift_Ins	INS	-	TCGA-2G-AALG-01A-11D-A42Y-10	5	7947386	125904509	32	4553	10	2									
RNF6	6049	mdanderson.org	37	chr13	26793723	26793723	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttctctcattttcatgatGattatggtcttgaggtaagg	9	6	5	3	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_183043	exon3	c.C64A	p.H22N	CATGATGATTATG		124	5	0.04	113	0	0				0	0					T	26793723	G	T	26793723	3	4	65	1	0	0	0	0	1	0	0	0	13549	1290	45	3	2005	3	RNF6	13	26793723	Missense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10		26793723	88376155	33	4554											
C14orf183	0	broad.mit.edu	37	chr14	50550133	50550134	+	RNA	INS	-	-	TCTG													gtctatccagccaatctctcINStctgtctttctctctctcgc					rs145296357	bycluster;by1000genomes	TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	C14orf183	.	.	.	.	ATCTCTCTCTGTC		9	4	0.44	5	0	0		9		0	0					TCTG	50550134	-	TCTG	50550133	6	5	65	0	1	1	1	0	0	0	0	0	1772	928	32	0		0	C14orf183	14	50550133	RNA	INS	-	TCGA-2G-AALG-01A-11D-A42Y-10		50550133	56799407	34	4555											
SERPINA1	5265	broad.mit.edu	37	chr14	94849140	94849140	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccactagcttcaggccctcGctgaggaacaggccattgcc	10	15	1	1	rs11558263	byhapmap	TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	SERPINA1	NM_001127701	exon4	c.C435A	p.S145R	GCCCTCGCTGAGG		140	5	0.04	128	1	0.0078125		51		1314	0	0				T	94849140	G	T	94849140	3	4	65	1	0	0	0	0	1	0	0	0	14139	1078	38	1	837	1	SERPINA1	14	94849140	Missense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	44299007	94849140	12500400	35	4556											
SLC25A29	123096	mdanderson.org	37	chr14	100758776	100758776	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggcgcgcagcagcgtggaCgccagcccccgtgtgaagac	15	14	0	2	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_001039355	exon4	c.G756A	p.A252A	CGTGGACGCCAGC		24	3	0.13	25	0	0				9	0	0				T	100758776	C	T	100758776	2	4	65	1	0	0	0	0	0	0	0	1	14546	523	19	1		1	SLC25A29	14	100758776	Silent	SNP	C	TCGA-2G-AALG-01A-11D-A42Y-10	5909636	100758776	6590764	36	4557											
MESP2	145873	hgsc.bcm.edu	37	chr15	90320132	90320132	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcaggcggaggggcaggggCaagggcaggggcaggggcag	25	8	0	0	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	MESP2,NS,carcinoma,-2,1	MESP2	NM_001039958	exon1	c.C544G	p.Q182E	CAGGGGCAAGGGC		16	2	0.13	23	0	0		-2	1	0	0					G	90320132	C	G	90320132	3	3	65	1	0	0	0	0	1	0	0	0	9532	711	25	5	546	5	MESP2	15	90320132	Missense_Mutation	SNP	C	TCGA-2G-AALG-01A-11D-A42Y-10		90320132	12211260	37	4558											
RHBDF1	64285	mdanderson.org	37	chr16	113155	113155	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catctgccacacggaaggcaCggccacgggccagggggtct	15	14	2	0	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_022450	exon5	c.G488A	p.R163H	AAGGCACGGCCAC		51	3	0.06	67	0	0				7	0	0				T	113155	C	T	113155	3	4	65	1	0	0	0	0	1	0	0	0	13368	536	19	1	2135	1	RHBDF1	16	113155	Missense_Mutation	SNP	C	TCGA-2G-AALG-01A-11D-A42Y-10		113155	90241598	38	4559											
TRAF7	84231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	2221328	2221328	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcagctctgctgcagcgtcTtcaaagaccccgtgatcacc	9	15	5	2	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_032271	exon6	c.T412C	p.F138L	AGCGTCTTCAAAG		67	15	0.22	52	0	0				49	9	0.18				C	2221328	T	C	2221328	3	2	65	1	0	0	0	0	1	0	0	0	16506	1609	56	4	430	4	TRAF7	16	2221328	Missense_Mutation	SNP	T	TCGA-2G-AALG-01A-11D-A42Y-10	2108173	2221328	88133425	39	4560											
PRSS36	146547	mdanderson.org	37	chr16	31154162	31154162	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcgctcaggttcacgggcGtgcgcagctgcagcagcgcc	15	16	2	0	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_001258290	exon9	c.C1253A	p.T418K	ACGGGCGTGCGCA		36	3	0.08	31	0	0				0	0					T	31154162	G	T	31154162	3	4	65	1	0	0	0	0	1	0	0	0	12673	1145	40	1	1342	1	PRSS36	16	31154162	Missense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	28932834	31154162	59200591	40	4561											
COG4	25839	hgsc.bcm.edu;mdanderson.org	37	chr16	70530257	70530257	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtgcatgatgttcacgGcacttgtcaccccgcgctgg	12	13	2	1	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_015386	exon12	c.C1559T	p.A520V	TTCACGGCACTTG		140	6	0.04	102	0	0				113	0	0				A	70530257	G	A	70530257	3	1	65	1	0	0	0	0	1	0	0	0	3683	1203	42	2	842	2	COG4	16	70530257	Missense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	39376095	70530257	19824496	41	4562											
SYCE1L	100130958	broad.mit.edu	37	chr16	77233353	77233354	+	Frame_Shift_Ins	INS	-	-	G													gccccgcgttggaaaatggcINSggggaagctgaaacctctga					novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	SYCE1L	NM_001129979	exon1	c.5_6insG	p.A2fs	AAATGGCGGGGAA		199	7	0.04	193	0	0		10		30	0	0				G	77233354	-	G	77233353	7	5	65	1	0	1	1	0	0	0	0	0	15484	768	27	0	7	0	SYCE1L	16	77233353	Frame_Shift_Ins	INS	-	TCGA-2G-AALG-01A-11D-A42Y-10	6703096	77233353	13121400	42	4563											
TAF1C	9013	mdanderson.org	37	chr16	84213858	84213858	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggccggggcggaggcagCagtcgggccagcaggagcgg	22	11	0	0	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_005679	exon12	c.G1479A	p.L493L	AGGCAGCAGTCGG		15	3	0.2	17	0	0				52	0	0				T	84213858	C	T	84213858	2	4	65	1	0	0	0	0	0	0	0	1	15577	697	25	2		2	TAF1C	16	84213858	Silent	SNP	C	TCGA-2G-AALG-01A-11D-A42Y-10	6980505	84213858	6140895	43	4564											
PRPF8	10594	mdanderson.org	37	chr17	1576479	1576479	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggaaacactgagctgtgcGctccttagtaacctaaacca	8	12	0	1	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_006445	exon24	c.C3670T	p.R1224C	CTGTGCGCTCCTT		85	4	0.05	97	0	0				9	0	0				A	1576479	G	A	1576479	3	1	65	1	0	0	0	0	1	0	0	0	12626	1087	38	1	3417	1	PRPF8	17	1576479	Missense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10		1576479	79618731	44	4565											
ITGAE	3682	broad.mit.edu	37	chr17	3660286	3660286	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggagccctcaccttccatgCtgatgatgttgtaccgcagt	10	13	1	2	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	ITGAE	NM_002208	exon10	c.G1163A	p.S388N	TCCATGCTGATGA		104	4	0.04	85	0	0		96		0	0					T	3660286	C	T	3660286	3	4	65	1	0	0	0	0	1	0	0	0	7928	797	28	2	2464	2	ITGAE	17	3660286	Missense_Mutation	SNP	C	TCGA-2G-AALG-01A-11D-A42Y-10	2083807	3660286	77534924	45	4566											
CAMTA2	23125	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	4883462	4883462	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cctccatatgtctggcccctCtgggggctgttgagaaaacg	12	12	2	1	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	CAMTA2	NM_001171167	exon9	c.G1224C	p.Q408H	GCCCCTCTGGGGG		175	6	0.03	213	1	0.0046948357		93		4	0	0				G	4883462	C	G	4883462	3	3	65	1	0	0	0	0	1	0	0	0	2632	912	32	5	2563	5	CAMTA2	17	4883462	Missense_Mutation	SNP	C	TCGA-2G-AALG-01A-11D-A42Y-10	1223176	4883462	76311748	46	4567											
CPD	1362	broad.mit.edu	37	chr17	28758789	28758789	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcctcttttcccttataGgttctttggtggttaactac	6	9	2	0	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	CPD	NM_001304	exon8	c.2018-1G>T	.	CTTATAGGTTCTT		129	5	0.04	96	0	0		89		0	0					T	28758789	G	T	28758789	5	4	65	1	0	0	0	0	0	0	1	0	3821	1014	35	3	2047	3	CPD	17	28758789	Splice_Site	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	23875327	28758789	52436421	47	4568											
CBX1	10951	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr17	46154242	46154242	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttactctgagaatcccttcCactttaggaggtactccact	6	13	1	1	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_006807	exon2	c.G125A	p.W42X	CCCTTCCACTTTA		206	18	0.09	183	0	0				25	0	0				T	46154242	C	T	46154242	4	4	65	1	0	0	0	0	0	1	0	0	2735	595	21	3	448	3	CBX1	17	46154242	Nonsense_Mutation	SNP	C	TCGA-2G-AALG-01A-11D-A42Y-10	17395453	46154242	35040968	48	4569											
PHOSPHO1	162466	mdanderson.org	37	chr17	47301803	47301803	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcagaagtcgttggcgccGtcgcccacgtagaagaggcg	17	11	0	3	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_001143804	exon3	c.C684T	p.D228D	GGCGCCGTCGCCC		43	3	0.07	31	0	0				0	0					A	47301803	G	A	47301803	2	1	65	1	0	0	0	0	0	0	0	1	11903	1136	40	1		1	PHOSPHO1	17	47301803	Silent	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	1147561	47301803	33893407	49	4570											
BZRAP1	9256	hgsc.bcm.edu	37	chr17	56386622	56386622	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctcgtcctcctcttcctcTtcctcctcctccgggatgct	5	20	2	0	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_004758	exon22	c.A4011G	p.E1337E	TTCCTCTTCCTCC		79	8	0.1	80	0	0				8	1	0.13				C	56386622	T	C	56386622	2	2	65	1	0	0	0	0	0	0	0	1	1580	1606	56	4		4	BZRAP1	17	56386622	Silent	SNP	T	TCGA-2G-AALG-01A-11D-A42Y-10	9084819	56386622	24808588	50	4571											
EVPL	2125	broad.mit.edu;mdanderson.org	37	chr17	74008164	74008164	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcggctctggatctcctgcgTcagcctctgccagggaagaa	12	13	4	1	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	EVPL	NM_001988	exon19	c.A2380C	p.T794P	CCTGCGTCAGCCT		56	3	0.05	52	0	0		155		8	1	0.13				G	74008164	T	G	74008164	3	3	65	1	0	0	0	0	1	0	0	0	5320	1667	58	4	3737	4	EVPL	17	74008164	Missense_Mutation	SNP	T	TCGA-2G-AALG-01A-11D-A42Y-10	17621542	74008164	7187046	51	4572											
KISS1R	84634	mdanderson.org	37	chr19	920547	920547	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggctcgcacttccgacaGgccttccgccgcgtctgccc	11	19	1	0	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_032551	exon5	c.G996T	p.Q332H	CCGACAGGCCTTC		13	3	0.23	22	0	0				1	0	0				T	920547	G	T	920547	3	4	65	1	0	0	0	0	1	0	0	0	8370	991	35	3	1014	3	KISS1R	19	920547	Missense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10		920547	58208436	52	4573											
MATK	4145	mdanderson.org	37	chr19	3784375	3784375	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgaccacgtcgcccttgcgGaaggccagctcccctggctt	12	16	0	1	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_002378	exon4	c.C210A	p.F70L	CTTGCGGAAGGCC		36	3	0.08	31	0	0				3	0	0				T	3784375	G	T	3784375	3	4	65	1	0	0	0	0	1	0	0	0	9381	1165	41	3	1360	3	MATK	19	3784375	Missense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	2863828	3784375	55344608	53	4574											
ICAM3	3385	mdanderson.org	37	chr19	10445899	10445899	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtcgcattcagcatctgGtcccccagcgccaggtagac	10	15	2	1	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_002162	exon4	c.C780A	p.D260E	CATCTGGTCCCCC		49	3	0.06	70	0	0				36	0	0				T	10445899	G	T	10445899	3	4	65	1	0	0	0	0	1	0	0	0	7524	1252	44	3	879	3	ICAM3	19	10445899	Missense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	6661524	10445899	48683084	54	4575											
SMARCA4	6597	mdanderson.org	37	chr19	11129657	11129657	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtccaactgggcgtacgaGtttgacaagtgggccccctc	12	13	0	1	rs375459615	alternate_allele	TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	SMARCA4,NS,lymphoid_neoplasm,+2,3	SMARCA4	NM_003072	exon17	c.G2463T	p.E821D	GTACGAGTTTGAC		126	5	0.04	159	0	0		2	3	32	0	0				T	11129657	G	T	11129657	3	4	65	1	0	0	0	0	1	0	0	0	14823	1020	36	3	2525	3	SMARCA4	19	11129657	Missense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	683758	11129657	47999326	55	4576											
MAN2B1	4125	mdanderson.org	37	chr19	12776540	12776540	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cataaaagtactggtccacgGttttgagccagcccacgtca	9	12	1	1	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_000528	exon2	c.C239A	p.T80N	TCCACGGTTTTGA		52	3	0.06	58	0	0				32	0	0				T	12776540	G	T	12776540	3	4	65	1	0	0	0	0	1	0	0	0	9265	1261	44	3	2888	3	MAN2B1	19	12776540	Missense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	1646883	12776540	46352443	56	4577											
CIC	23152	mdanderson.org	37	chr19	42791528	42791528	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctaccgcccggaaaacgtcGgacccagtccctcagtgccc	9	18	2	0	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_015125	exon4	c.G509T	p.R170L	AACGTCGGACCCA		51	3	0.06	49	0	0				8	0	0				T	42791528	G	T	42791528	3	4	65	1	0	0	0	0	1	0	0	0	3446	1116	39	1	523	1	CIC	19	42791528	Missense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	30014988	42791528	16337455	57	4578											
TMC4	147798	mdanderson.org	37	chr19	54675697	54675697	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgggaagggtgagggtcctGcagctctgtctgggtgactt	17	9	2	2	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_001145303	exon2	c.C253A	p.Q85K	GGTCCTGCAGCTC		47	4	0.09	76	0	0				62	1	0.02				T	54675697	G	T	54675697	3	4	65	1	0	0	0	0	1	0	0	0	16046	1328	46	2	1941	2	TMC4	19	54675697	Missense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	11884169	54675697	4453286	58	4579											
ZNF628	89887	ucsc.edu	37	chr19	55994302	55994302	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcgcgcagacctccaaccTgcggcagcaccagcgcgtgc	11	18	0	1	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	ZNF628	NM_033113	exon3	c.T1742C	p.L581P	CCAACCTGCGGCA		34	4	0.12	27	0	0		75		8	0	0				C	55994302	T	C	55994302	3	2	65	1	0	0	0	0	1	0	0	0	18108	1580	55	4	1732	4	ZNF628	19	55994302	Missense_Mutation	SNP	T	TCGA-2G-AALG-01A-11D-A42Y-10	1318605	55994302	3134681	59	4580											
XRN2	22803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	21319698	21319698	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttaggacagttttagaagacGacagaaagaaaaaagaaaga	10	3	0	6	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_012255	exon14	c.G1250A	p.R417Q	GAAGACGACAGAA		60	16	0.27	54	0	0				24	5	0.21				A	21319698	G	A	21319698	3	1	65	1	0	0	0	0	1	0	0	0	17519	1058	37	1	1304	1	XRN2	20	21319698	Missense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10		21319698	41705822	60	4581											
TXNRD2	10587	mdanderson.org	37	chr22	19885586	19885586	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgaagccgcggagggggatGctgcgcatcatgatggtggt	18	8	1	1	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	.	.	.	.	GGGGATGCTGCGC		47	3	0.06	54	0	0				45	0	0				A	19885586	G	A	19885586	2	1	65	1	0	0	0	0	0	0	0	1	16869	1310	46	2		2	TXNRD2	22	19885586	Silent	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10		19885586	31418980	61	4582											
TOP3B	8940	mdanderson.org	37	chr22	22326986	22326986	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggccagccccacgcacctGcaggaacttcaccatgttca	8	17	2	0	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_003935	exon4	c.C307A	p.Q103K	GCACCTGCAGGAA		48	3	0.06	92	0	0				10	0	0				T	22326986	G	T	22326986	3	4	65	1	0	0	0	0	1	0	0	0	16428	1328	46	2	2341	2	TOP3B	22	22326986	Missense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	2441400	22326986	28977580	62	4583											
PPP1R3F	89801	mdanderson.org	37	chrX	49142704	49142704	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggggagggctccacagatGgagggatgtcccccagccat	16	11	0	1	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_033215	exon4	c.G1552T	p.G518X	ACAGATGGAGGGA		50	3	0.06	35	0	0				2	0	0				T	49142704	G	T	49142704	4	4	65	1	0	0	0	0	0	1	0	0	12423	1349	47	3	1566	3	PPP1R3F	23	49142704	Nonsense_Mutation	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10		49142704	106127856	63	4584											
SLC6A8	6535	broad.mit.edu	37	chrX	152960296	152960296	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctccatgctgtgcgtgccGctgcacctcctgggctgcct	11	17	0	0	rs2314070		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	SLC6A8	NM_005629	exon12	c.G1719A	p.P573P	CGTGCCGCTGCAC		57	3	0.05	46	0	0		34		43	4	0.09				A	152960296	G	A	152960296	2	1	65	1	0	0	0	0	0	0	0	1	14744	1074	38	1		1	SLC6A8	23	152960296	Silent	SNP	G	TCGA-2G-AALG-01A-11D-A42Y-10	103817592	152960296	2310264	64	4585											
SLC45A1	50651	mdanderson.org	37	chr1	8385880	8385880	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtttctctgtgtccagggGcactgctgggcctctcgctc	12	13	2	0	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_001080397	exon3	c.G493T	p.A165S	CCAGGGGCACTGC		23	3	0.13	28	0	0				0	0					T	8385880	G	T	8385880	3	4	66	1	0	0	0	0	1	0	0	0	14694	1203	42	2	503	2	SLC45A1	1	8385880	Missense_Mutation	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10		8385880	240864741	1	4586											
SEC22B	9554	broad.mit.edu	37	chr1	145109284	145109292	+	RNA	DEL	AAAAAAAAA	AAAAAAAAA	-													gcagagcgagactccgtctcAaaaaaaaagaaaaaaaaaaa					rs34197869		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	AAAAAAAAA	AAAAAAAAA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	.	.	.	.	CGTCTCAAAAAAA		10	3	0.3	6	0	0				0	0					-	145109292	AAAAAAAAA	-	145109284	6	5	66	0	1	1	0	1	0	0	0	0	14042	145	5	0		0	SEC22B	1	145109284	RNA	DEL	AAAAAAAAA	TCGA-2G-AALN-01A-11D-A42Y-10	136723404	145109284	104141337	2	4587											
MUC1	4582	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr1	155161884	155161884	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacctgaagctggttccgtGgccggggccagagtgacatc	15	11	0	3	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_001204286	exon2	c.C276A	p.A92A	TTCCGTGGCCGGG		121	5	0.04	68	0	0				6	0	0				T	155161884	G	T	155161884	2	4	66	1	0	0	0	0	0	0	0	1	10017	1363	47	3		3	MUC1	1	155161884	Silent	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10	10052600	155161884	94088737	3	4588											
LHCGR	3973	mdanderson.org	37	chr2	48982764	48982764	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggcagcggcggctgcagcAgcagcagcagcttcagcagc	16	13	1	0	rs4539842	bycluster	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_000233	exon1	c.T47A	p.L16Q	TGCAGCAGCAGCA		11	3	0.27	13	0	0				0	0					T	48982764	A	T	48982764	3	4	66	1	0	0	0	0	1	0	0	0	8801	188	7	5	2096	5	LHCGR	2	48982764	Missense_Mutation	SNP	A	TCGA-2G-AALN-01A-11D-A42Y-10		48982764	194216609	4	4589											
CHRNA1	1134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	175614728	175614728	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtgagcggtggtgtgtgttGatgacgatgacagtgatgat	18	3	0	6	rs141733086	byfrequency;alternate_allele	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_001039523	exon8	c.C1023T	p.I341I	TGTGTTGATGACG		145	39	0.27	102	0	0				4	0	0				A	175614728	G	A	175614728	2	1	66	1	0	0	0	0	0	0	0	1	3403	1280	45	3		3	CHRNA1	2	175614728	Silent	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10	126631964	175614728	67584645	5	4590											
THAP4	51078	mdanderson.org	37	chr2	242573038	242573038	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgccaccatggtggccagTccatctcctggagtccgttc	10	16	1	0	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_015963	exon2	c.A534G	p.G178G	GGCCAGTCCATCT		48	3	0.06	34	0	0				61	0	0				C	242573038	T	C	242573038	2	2	66	1	0	0	0	0	0	0	0	1	15905	1654	58	4		4	THAP4	2	242573038	Silent	SNP	T	TCGA-2G-AALN-01A-11D-A42Y-10	66958310	242573038	626335	6	4591											
RPN1	6184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	128344482	128344482	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcagcatgagcaccttgttGaacgtgtagtggacctggga	14	8	0	2	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_002950	exon8	c.C1290T	p.F430F	CTTGTTGAACGTG		84	24	0.29	66	0	0				414	124	0.3				A	128344482	G	A	128344482	2	1	66	1	0	0	0	0	0	0	0	1	13658	1281	45	3		3	RPN1	3	128344482	Silent	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10		128344482	69677948	7	4592											
MUC4	4585	ucsc.edu	37	chr3	195510666	195510666	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gatgctgagtaagtgtcggtGacaggaagaggggtggtgtc	19	4	0	3	rs2948679		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	MUC4	NM_018406	exon2	c.C7785T	p.V2595V	GTCGGTGACAGGA		68	6	0.09	38	2	0.0526315789		1505		0	0					A	195510666	G	A	195510666	2	1	66	1	0	0	0	0	0	0	0	1	10025	1277	45	3		3	MUC4	3	195510666	Silent	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10	67166184	195510666	2511764	8	4593											
ANKRD17	26057	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	73958006	73958006	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagttgcttgtcttgttgatTcagtgccacccctataaatt	8	9	2	1	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	ANKRD17	NM_032217	exon29	c.A5339G	p.E1780G	GTTGATTCAGTGC		68	25	0.37	71	1	0.014084507		214		0	0					C	73958006	T	C	73958006	3	2	66	1	0	0	0	0	1	0	0	0	642	1783	62	4	2496	4	ANKRD17	4	73958006	Missense_Mutation	SNP	T	TCGA-2G-AALN-01A-11D-A42Y-10		73958006	117196270	9	4594											
CD14	929	mdanderson.org	37	chr5	140011835	140011835	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggctgcacacctgccgccGccagtgcggcgcacacgcct	14	18	0	0	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_001174105	exon3	c.C734T	p.A245V	GCCGCCGCCAGTG		39	3	0.08	35	0	0				300	1	0				A	140011835	G	A	140011835	3	1	66	1	0	0	0	0	1	0	0	0	2986	1087	38	1	397	1	CD14	5	140011835	Missense_Mutation	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10		140011835	40903425	10	4595											
EBF1	1879	broad.mit.edu	37	chr5	158523398	158523398	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgaattccgttattggtcTtttcgctgttggcttcctgg	11	8	1	1	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	EBF1,NS,carcinoma,+1,1	EBF1	NM_024007	exon3	c.A308G	p.K103R	TTGGTCTTTTCGC		70	3	0.04	49	0	0		110	1	0	0					C	158523398	T	C	158523398	3	2	66	1	0	0	0	0	1	0	0	0	4906	1609	56	4	1523	4	EBF1	5	158523398	Missense_Mutation	SNP	T	TCGA-2G-AALN-01A-11D-A42Y-10	18511563	158523398	22391862	11	4596											
MUC21	394263	mdanderson.org	37	chr6	30954393	30954393	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcacaacctccagtggggcTagcacagccaccaactctga	9	15	1	1	rs9262330	bycluster	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_001010909	exon2	c.T441C	p.A147A	TGGGGCTAGCACA		53	3	0.06	39	1	0.0256410256				0	0					C	30954393	T	C	30954393	2	2	66	1	0	0	0	0	0	0	0	1	10024	1509	53	4		4	MUC21	6	30954393	Silent	SNP	T	TCGA-2G-AALN-01A-11D-A42Y-10		30954393	140160674	12	4597											
MOCS1	4337	mdanderson.org	37	chr6	39883820	39883820	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acatccgctcacctttcctgCggacaatgaactcaaacttg	6	14	2	1	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_001075098	exon4	c.G575A	p.R192H	TTCCTGCGGACAA		55	3	0.05	43	0	0				9	0	0				T	39883820	C	T	39883820	3	4	66	1	0	0	0	0	1	0	0	0	9738	768	27	1	610	1	MOCS1	6	39883820	Missense_Mutation	SNP	C	TCGA-2G-AALN-01A-11D-A42Y-10	8929427	39883820	131231247	13	4598											
FAM20C	56975	mdanderson.org	37	chr7	195682	195682	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtactccagacacaacccggCcatcgaggccctgctgcacg	10	17	0	1	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_020223	exon2	c.C734T	p.A245V	ACCCGGCCATCGA		40	3	0.08	34	0	0				41	0	0				T	195682	C	T	195682	3	4	66	1	0	0	0	0	1	0	0	0	5570	739	26	2	740	2	FAM20C	7	195682	Missense_Mutation	SNP	C	TCGA-2G-AALN-01A-11D-A42Y-10		195682	158942981	14	4599											
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	121682713	121682713	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgctagacagtatgttgcaGcagattcaacacgaaggaac	11	8	1	2	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_002851	exon22	c.G5853A	p.Q1951Q	GTTGCAGCAGATT		133	34	0.26	160	0	0				7	1	0.14				A	121682713	G	A	121682713	2	1	66	1	0	0	0	0	0	0	0	1	12865	962	34	2		2	PTPRZ1	7	121682713	Silent	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10	121487031	121682713	37455950	15	4600											
SET	6418	mdanderson.org	37	chr9	131446269	131446269	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagacatcggcctctgcagGcttgccgaagaagggaggta	16	9	1	2	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_001122821	exon1	c.G95T	p.G32V	CTGCAGGCTTGCC		41	3	0.07	24	0	0				243	0	0				T	131446269	G	T	131446269	3	4	66	1	0	0	0	0	1	0	0	0	14181	1203	42	2	97	2	SET	9	131446269	Missense_Mutation	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10		131446269	9767162	16	4601											
SLC34A3	142680	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	140129149	140129149	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccctgctggctgccctggCcagccccgcagacaggatgc	13	17	0	1	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	SLC34A3	NM_001177317	exon12	c.C1301T	p.A434V	CCCTGGCCAGCCC		31	5	0.16	27	0	0		32		1	0	0				T	140129149	C	T	140129149	3	4	66	1	0	0	0	0	1	0	0	0	14623	739	26	2	1343	2	SLC34A3	9	140129149	Missense_Mutation	SNP	C	TCGA-2G-AALN-01A-11D-A42Y-10	8682880	140129149	1084282	17	4602											
CALML3	810	mdanderson.org	37	chr10	5567450	5567450	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgcggacacggacggagaCggacaggtgaactacgagga	17	10	0	2	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_005185	exon1	c.C402T	p.D134D	CGGAGACGGACAG		47	3	0.06	39	0	0				1	0	0				T	5567450	C	T	5567450	2	4	66	1	0	0	0	0	0	0	0	1	2605	535	19	1		1	CALML3	10	5567450	Silent	SNP	C	TCGA-2G-AALN-01A-11D-A42Y-10		5567450	129967297	18	4603											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggacaagggagaggtcttGatgtttttctgtgatgttga	15	3	2	4	rs79064394	bycluster	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	CSGALNACT2,NS,carcinoma,0,5	CSGALNACT2	NM_018590	exon5	c.G1086T	p.L362F	GGTCTTGATGTTT		110	4	0.04	113	2	0.017699115		67	5	11	0	0				T	43659419	G	T	43659419	3	4	66	1	0	0	0	0	1	0	0	0	3964	1281	45	3	1100	3	CSGALNACT2	10	43659419	Missense_Mutation	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10	38091969	43659419	91875328	19	4604											
GDF10	2662	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	48429456	48429456	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gcatagcacctcgagcgctcGaggccaccgaggcggctctg	14	15	1	0	rs139712067	alternate_allele	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_004962	exon2	c.C430G	p.R144G	GCGCTCGAGGCCA		69	22	0.32	68	0	0				2	0	0				C	48429456	G	C	48429456	3	2	66	1	0	0	0	0	1	0	0	0	6352	1066	37	5	1014	5	GDF10	10	48429456	Missense_Mutation	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10	4770037	48429456	87105291	20	4605											
DHX32	55760	mdanderson.org	37	chr10	127526784	127526784	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	attaaacttacagttcaggaGagatttctgaggtaatcctg	9	6	2	2	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_018180	exon10	c.C2054A	p.S685Y	TCAGGAGAGATTT		37	3	0.08	45	0	0				63	0	0				T	127526784	G	T	127526784	3	4	66	1	0	0	0	0	1	0	0	0	4533	942	33	3	185	3	DHX32	10	127526784	Missense_Mutation	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10	79097328	127526784	8007963	21	4606											
KRTAP5-5	439915	hgsc.bcm.edu	37	chr11	1651442	1651442	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtggctcctgtgggggGtccaaggggggctgtggctc	21	9	0	0	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	KRTAP5-5,bladder,carcinoma,0,4	KRTAP5-5	NM_001001480	exon1	c.G372C	p.G124G	TGGGGGGTCCAAG		47	6	0.13	37	2	0.0540540541		0	4	0	0					C	1651442	G	C	1651442	2	2	66	1	0	0	0	0	0	0	0	1	8602	1248	44	5		5	KRTAP5-5	11	1651442	Silent	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10		1651442	133355074	22	4607											
RTN4RL2	349667	mdanderson.org	37	chr11	57243909	57243909	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggctcaacgctaacccctGggcgtgcgactgccgcgcgc	14	17	1	0	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_178570	exon3	c.G788T	p.W263L	ACCCCTGGGCGTG		10	2	0.2	12	0	0				0	0					T	57243909	G	T	57243909	3	4	66	1	0	0	0	0	1	0	0	0	13783	1357	47	3	798	3	RTN4RL2	11	57243909	Missense_Mutation	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10	55592467	57243909	77762607	23	4608											
MARK2	2011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	63662685	63662685	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaagtccaacatgattcggGgccgcaactcagccacctct	9	14	2	1	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_001163296	exon2	c.G109A	p.G37S	ATTCGGGGCCGCA		93	16	0.17	79	0	0				4	2	0.5				A	63662685	G	A	63662685	3	1	66	1	0	0	0	0	1	0	0	0	9362	1232	43	3	115	3	MARK2	11	63662685	Missense_Mutation	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10	6418776	63662685	71343831	24	4609											
ATG2A	23130	mdanderson.org	37	chr11	64684506	64684506	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgaggctgagctggtccagGctgaggtgctcttggaagaa	16	8	1	3	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_015104	exon1	c.C102A	p.S34R	GTCCAGGCTGAGG		46	3	0.07	40	0	0				0	0					T	64684506	G	T	64684506	3	4	66	1	0	0	0	0	1	0	0	0	1092	1194	42	2	5878	2	ATG2A	11	64684506	Missense_Mutation	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10	1021821	64684506	70322010	25	4610											
SART1	9092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	65733919	65733919	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcggcacggctgatggcctGcgggagcgggagctggagga	22	9	0	1	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_005146	exon9	c.G1080A	p.L360L	TGGCCTGCGGGAG		82	36	0.44	50	0	0				163	64	0.39				A	65733919	G	A	65733919	2	1	66	1	0	0	0	0	0	0	0	1	13898	1306	46	2		2	SART1	11	65733919	Silent	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10	1049413	65733919	69272597	26	4611											
TRPC6	7225	mdanderson.org	37	chr11	101454180	101454180	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgccgcgcagcggctccggCagcgccccggggagaactgc	17	17	0	1	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_004621	exon1	c.G55A	p.A19T	CTCCGGCAGCGCC		20	2	0.1	19	0	0				0	0					T	101454180	C	T	101454180	3	4	66	1	0	0	0	0	1	0	0	0	16643	710	25	2	2792	2	TRPC6	11	101454180	Missense_Mutation	SNP	C	TCGA-2G-AALN-01A-11D-A42Y-10	35720261	101454180	33552336	27	4612											
C11orf92	399948	mdanderson.org	37	chr11	111167557	111167557	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgttccttcagagggggcaAggcctaggcacagcgaggaa	15	10	1	1	rs6589218	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	.	.	.	.	GGGGCAAGGCCTA		104	3	0.03	126	0	0				0	0					T	111167557	A	T	111167557	1	4	66	0	1	0	0	0	0	0	0	0	1677	87	3	5		5	C11orf92	11	111167557	RNA	SNP	A	TCGA-2G-AALN-01A-11D-A42Y-10	9713377	111167557	23838959	28	4613											
FOXM1	2305	broad.mit.edu	37	chr12	2968305	2968305	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccttaatgggtgtcttaaaAggtcctcccacttcctggga	9	11	1	0	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	FOXM1	NM_202002	exon10	c.T1905C	p.P635P	CTTAAAAGGTCCT		89	3	0.03	16	0	0		62		281	3	0.01				G	2968305	A	G	2968305	2	3	66	1	0	0	0	0	0	0	0	1	6051	59	3	4		4	FOXM1	12	2968305	Silent	SNP	A	TCGA-2G-AALN-01A-11D-A42Y-10		2968305	130883590	29	4614											
KLRC3	3823	broad.mit.edu	37	chr12	10568291	10568291	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaagcgctttaattctaaaGcttatgctcacaatgattct	5	9	4	1	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	KLRC3	NM_007333	exon6	c.C690A	p.S230R	TCTAAAGCTTATG		336	8	0.02	106	2	0.0188679245		25		0	0					T	10568291	G	T	10568291	3	4	66	1	0	0	0	0	1	0	0	0	8459	962	34	2	136	2	KLRC3	12	10568291	Missense_Mutation	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10	7599986	10568291	123283604	30	4615											
KLRC3	3823	broad.mit.edu	37	chr12	10569302	10569302	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccatttattgtcacccatGgatgatgactgctgttacga	8	9	1	2	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	KLRC3	NM_007333	exon5	c.C551A	p.P184Q	ACCCATGGATGAT		1156	11	0.01	333	0	0		25		0	0					T	10569302	G	T	10569302	3	4	66	1	0	0	0	0	1	0	0	0	8459	1348	47	3	279	3	KLRC3	12	10569302	Missense_Mutation	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10	1011	10569302	123282593	31	4616											
TAS2R30	259293	mdanderson.org	37	chr12	11285924	11285924	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttgtgaatctatggagaCgaaggcttctgtctttcacc	9	10	5	2	rs2597924	bycluster	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_001097643	exon1	c.G920A	p.R307H	TGGAGACGAAGGC		305	19	0.06	105	1	0.0095238095				1	1	1				T	11285924	C	T	11285924	3	4	66	1	0	0	0	0	1	0	0	0	15629	536	19	1	43	1	TAS2R30	12	11285924	Missense_Mutation	SNP	C	TCGA-2G-AALN-01A-11D-A42Y-10	716622	11285924	122565971	32	4617											
WBP11	51729	broad.mit.edu	37	chr12	14947586	14947586	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggaggtggaccagggggAgggccaggaggttttctgcc	21	7	1	0	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	WBP11,right_lower_lobe,carcinoma,0,2	WBP11	NM_016312	exon7	c.T606C	p.P202P	AGGGGGAGGGCCA		574	8	0.01	161	2	0.0124223602		66	2	236	1	0				G	14947586	A	G	14947586	2	3	66	1	0	0	0	0	0	0	0	1	17317	291	11	4		4	WBP11	12	14947586	Silent	SNP	A	TCGA-2G-AALN-01A-11D-A42Y-10	3661662	14947586	118904309	33	4618											
ITPR2	3709	broad.mit.edu	37	chr12	26568269	26568269	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcggtttttcagcctatcaaCttccatagtgaagtcatcct	6	11	3	1	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	ITPR2	NM_002223	exon51	c.G7273A	p.V2425I	TATCAACTTCCAT		534	5	0.01	142	0	0		270		12	0	0				T	26568269	C	T	26568269	3	4	66	1	0	0	0	0	1	0	0	0	7964	565	20	3	860	3	ITPR2	12	26568269	Missense_Mutation	SNP	C	TCGA-2G-AALN-01A-11D-A42Y-10	11620683	26568269	107283626	34	4619											
KIF21A	55605	broad.mit.edu	37	chr12	39735383	39735383	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcctcctcctcctcctcCtcttcttcatcctcatgatc	1	20	5	1	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	KIF21A,NS,carcinoma,0,2	KIF21A	NM_001173464	exon14	c.G1845A	p.E615E	CTCCTCCTCTTCT		109	4	0.04	74	0	0		238	2	0	0					T	39735383	C	T	39735383	2	4	66	1	0	0	0	0	0	0	0	1	8329	680	24	3		3	KIF21A	12	39735383	Silent	SNP	C	TCGA-2G-AALN-01A-11D-A42Y-10	13167114	39735383	94116512	35	4620											
KRT2	3849	mdanderson.org	37	chr12	53045777	53045777	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgcctccaccgaagcccccGccaccaccaccatggcggct	8	23	0	0	rs11835758	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_000423	exon1	c.C150G	p.G50G	GCCCCCGCCACCA		50	2	0.04	37	0	0				0	0					C	53045777	G	C	53045777	2	2	66	1	0	0	0	0	0	0	0	1	8499	1074	38	5		5	KRT2	12	53045777	Silent	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10	13310394	53045777	80806118	36	4621											
MARS	4141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	57883693	57883693	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaaggagacagaatctctAgccgacattgttttgtgggg	12	7	1	2	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_004990	exon5	c.A429G	p.L143L	ATCTCTAGCCGAC		234	45	0.19	126	0	0				42	14	0.33				G	57883693	A	G	57883693	2	3	66	1	0	0	0	0	0	0	0	1	9365	407	15	4		4	MARS	12	57883693	Silent	SNP	A	TCGA-2G-AALN-01A-11D-A42Y-10	4837916	57883693	75968202	37	4622											
CDKL1	27109	bcgsc.ca	37	chr14	50798935	50798936	+	Frame_Shift_Del	DEL	CT	CT	-													tcctcaagtctagattccaaCtctctgtaccaggtggcagg					novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	CT	CT					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	RP11-247L20.2,NS,carcinoma,-2,2	CDKL1	.	.	.	.	TTCCAACTCTCTG		79	21	0.27	48	0	0		50	2	0	0					-	50798936	CT	-	50798935	7	5	66	1	0	1	0	1	0	0	0	0	3175	580	20	0		0	CDKL1	14	50798935	Frame_Shift_Del	DEL	CT	TCGA-2G-AALN-01A-11D-A42Y-10		50798935	56550605	38	4623											
VTI1B	10490	mdanderson.org	37	chr14	68118105	68118105	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccttccctatagaagttcaAtggctgcgaaagaatttgta	8	9	1	2	rs115023419	bycluster;by1000genomes	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_006370	exon6	c.T696C	p.H232H	AGTTCAATGGCTG		57	3	0.05	45	0	0	0			496	0	0				G	68118105	A	G	68118105	2	3	66	1	0	0	0	0	0	0	0	1	17295	98	4	4		4	VTI1B	14	68118105	Silent	SNP	A	TCGA-2G-AALN-01A-11D-A42Y-10	17319170	68118105	39231435	39	4624											
SERF2	10169	broad.mit.edu	37	chr15	44085843	44085843	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttatcctttgtgcccttcaTccccctgcatcttgtccttt	4	16	2	0	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	SERF2	NM_001199875	exon3	c.T186C	p.H62H	CCTTCATCCCCCT		155	5	0.03	106	0	0		7		74	0	0				C	44085843	T	C	44085843	2	2	66	1	0	0	0	0	0	0	0	1	14129	1450	50	4		4	SERF2	15	44085843	Silent	SNP	T	TCGA-2G-AALN-01A-11D-A42Y-10		44085843	58445549	40	4625											
MEF2A	4205	hgsc.bcm.edu	37	chr15	100211846	100211846	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaatttgataatatgatgcGgaatcataaaatcgcagtga	10	4	1	3	rs75705863	bycluster	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	MEF2A_ENST00000354410,NS,carcinoma,+1,1	MEF2A_ENST00000354410	NM_005587	exon5	c.G380A	p.R127Q	TGATGCGGAATCA		49	2	0.04	14	0	0		1	1	0	0					A	100211846	G	A	100211846	3	1	66	1	0	0	0	0	1	0	0	0	9504	1116	39	1	526	1	MEF2A	15	100211846	Missense_Mutation	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10	56126003	100211846	2319546	41	4626											
SYNGR3	9143	mdanderson.org	37	chr16	2042125	2042125	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagccttcctcgcctgcgccGccttcctgctgctcgatgtg	11	17	0	0	rs367678643		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_004209	exon2	c.G250A	p.A84T	TGCGCCGCCTTCC		39	3	0.08	22	0	0				2	0	0				A	2042125	G	A	2042125	3	1	66	1	0	0	0	0	1	0	0	0	15506	1087	38	1	256	1	SYNGR3	16	2042125	Missense_Mutation	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10		2042125	88312628	42	4627											
SRRM2	23524	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr16	2819139	2819139	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctcctcctcCtcttcttcctcctcctcttc	0	24	3	0	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_016333	exon12	c.C7875T	p.S2625S	CTCCTCCTCTTCT		89	5	0.06	69	0	0				536	1	0				T	2819139	C	T	2819139	2	4	66	1	0	0	0	0	0	0	0	1	15224	668	24	3		3	SRRM2	16	2819139	Silent	SNP	C	TCGA-2G-AALN-01A-11D-A42Y-10	777014	2819139	87535614	43	4628											
SEPT12	124404	mdanderson.org	37	chr16	4837595	4837595	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagggtggggtgctggggcTggagggctgcgaggacaggc	24	7	0	0	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_001154458	exon2	c.A52G	p.S18G	TGGGGCTGGAGGG		38	3	0.08	18	0	0				0	0					C	4837595	T	C	4837595	3	2	66	1	0	0	0	0	1	0	0	0	14115	1580	55	4	1060	4	SEPT12	16	4837595	Missense_Mutation	SNP	T	TCGA-2G-AALN-01A-11D-A42Y-10	2018456	4837595	85517158	44	4629											
INO80E	283899	bcgsc.ca	37	chr16	30016646	30016652	+	Frame_Shift_Del	DEL	TAAGATG	TAAGATG	-													ctgacccccctcccacccccTaagatgcccccccccacgat					novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	TAAGATG	TAAGATG					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	INO80E	NM_173618	exon7	c.618_624del	p.206_208del	ACCCCCTAAGATG		144	0	0	124	0	0		26		58	0	0				-	30016652	TAAGATG	-	30016646	7	5	66	1	0	1	0	1	0	0	0	0	7793	1509	53	0	644	0	INO80E	16	30016646	Frame_Shift_Del	DEL	TAAGATG	TCGA-2G-AALN-01A-11D-A42Y-10	25179051	30016646	60338107	45	4630											
ALDOA	226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	30080966	30080966	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atggcgaccgtcacagcgctGcgccgcacagtgccccccgc	12	19	1	0	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_001243177	exon8	c.G933A	p.L311L	AGCGCTGCGCCGC		33	13	0.39	46	0	0				3837	1446	0.38				A	30080966	G	A	30080966	2	1	66	1	0	0	0	0	0	0	0	1	504	1306	46	2		2	ALDOA	16	30080966	Silent	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10	64320	30080966	60273787	46	4631											
ITGAM	3684	mdanderson.org	37	chr16	31284807	31284807	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aggatgtcatccctgaggcaGacagagagggagtcattcgc	14	9	2	3	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_000632	exon8	c.G826T	p.D276Y	GAGGCAGACAGAG		46	3	0.07	46	0	0				1	0	0				T	31284807	G	T	31284807	3	4	66	1	0	0	0	0	1	0	0	0	7930	942	33	3	856	3	ITGAM	16	31284807	Missense_Mutation	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10	1203841	31284807	59069946	47	4632											
HPR	3250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	72110949	72110949	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaggtgacttccatccagcActgggttcagaagaccatag	11	10	1	3	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_020995	exon5	c.A1016G	p.H339R	TCCAGCACTGGGT		63	13	0.21	61	0	0				8	4	0.5				G	72110949	A	G	72110949	3	3	66	1	0	0	0	0	1	0	0	0	7377	159	6	4	1034	4	HPR	16	72110949	Missense_Mutation	SNP	A	TCGA-2G-AALN-01A-11D-A42Y-10	40826142	72110949	18243804	48	4633											
CHST5	23563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	75563575	75563575	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgcgtgccagtatcgggccCgccgcctcccgggagcgcag	15	17	0	0	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	CHST5,NS,carcinoma,-2,1	CHST5	NM_024533	exon3	c.G708A	p.A236A	CGGGCCCGCCGCC		47	9	0.19	32	0	0		-2	1	0	0					T	75563575	C	T	75563575	2	4	66	1	0	0	0	0	0	0	0	1	3429	639	23	1		1	CHST5	16	75563575	Silent	SNP	C	TCGA-2G-AALN-01A-11D-A42Y-10	3452626	75563575	14791178	49	4634											
TMEM107	84314	broad.mit.edu	37	chr17	8079145	8079145	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagctccactgcaaagagGcccagggtgacagagagcgc	14	13	0	3	rs369840510	alternate_allele	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	TMEM107	NM_032354	exon3	c.C204A	p.G68G	AAAGAGGCCCAGG		133	4	0.03	93	0	0		16		33	0	0				T	8079145	G	T	8079145	2	4	66	1	0	0	0	0	0	0	0	1	16082	1190	42	2		2	TMEM107	17	8079145	Silent	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10		8079145	73116065	50	4635											
TBC1D3F	84218	bcgsc.ca	37	chr17	36288278	36288278	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaacactgaggaaatgaagTtgaaaaaccccggaagatac	10	7	0	5	rs79200053	bycluster;byfrequency	TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	TBC1D3F	NM_032258	exon6	c.T364A	p.L122M	ATGAAGTTGAAAA		83	13	0.16	58	1	0.0172413793		14		33	0	0				A	36288278	T	A	36288278	3	1	66	1	0	0	0	0	1	0	0	0	15679	1722	60	5	382	5	TBC1D3F	17	36288278	Missense_Mutation	SNP	T	TCGA-2G-AALN-01A-11D-A42Y-10	28209133	36288278	44906932	51	4636											
SEMA6B	10501	bcgsc.ca	37	chr19	4550280	4550280	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgggggctgcgcagcaccCgggcctgggggtgacaaggg	20	13	0	1	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	SEMA6B,colon,carcinoma,0,1	SEMA6B	NM_032108	exon12	c.G1126A	p.G376R	AGCACCCGGGCCT		76	4	0.05	65	0	0		51	1	57	0	0				T	4550280	C	T	4550280	3	4	66	1	0	0	0	0	1	0	0	0	14093	652	23	1	1564	1	SEMA6B	19	4550280	Missense_Mutation	SNP	C	TCGA-2G-AALN-01A-11D-A42Y-10		4550280	54578703	52	4637											
SSBP4	170463	mdanderson.org	37	chr19	18544013	18544013	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atggagcctcaccacgtgaaCggatccctgggtgagtgggc	15	11	1	2	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_032627	exon15	c.C981T	p.N327N	CGTGAACGGATCC		44	3	0.07	22	0	0				137	0	0				T	18544013	C	T	18544013	2	4	66	1	0	0	0	0	0	0	0	1	15237	535	19	1		1	SSBP4	19	18544013	Silent	SNP	C	TCGA-2G-AALN-01A-11D-A42Y-10	13993733	18544013	40584970	53	4638											
UPF1	5976	mdanderson.org	37	chr19	18971687	18971687	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaagttgctgaaggcaggcGccaagccggaccagattggc	15	11	0	2	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_002911	exon17	c.G2353A	p.A785T	GCAGGCGCCAAGC		42	3	0.07	37	0	0				41	0	0				A	18971687	G	A	18971687	3	1	66	1	0	0	0	0	1	0	0	0	17062	1087	38	1	2419	1	UPF1	19	18971687	Missense_Mutation	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10	427674	18971687	40157296	54	4639											
HAUS5	23354	mdanderson.org	37	chr19	36109839	36109839	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgcctgtggacggagctcaAggccctgcacgatcagagcc	13	13	2	1	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_015302	exon13	c.A1067G	p.K356R	AGCTCAAGGCCCT		44	3	0.07	52	0	0				19	0	0				G	36109839	A	G	36109839	3	3	66	1	0	0	0	0	1	0	0	0	7009	72	3	4	1117	4	HAUS5	19	36109839	Missense_Mutation	SNP	A	TCGA-2G-AALN-01A-11D-A42Y-10	17138152	36109839	23019144	55	4640											
PREX1	57580	mdanderson.org	37	chr20	47324813	47324813	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacctcccagccttcgatGtgggactgcagctgctccag	10	16	0	0	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_020820	exon6	c.C768A	p.H256Q	TTCGATGTGGGAC		47	3	0.06	35	0	0				10	0	0				T	47324813	G	T	47324813	3	4	66	1	0	0	0	0	1	0	0	0	12527	1368	48	3	4351	3	PREX1	20	47324813	Missense_Mutation	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10		47324813	15700707	56	4641											
RNF114	55905	mdanderson.org	37	chr20	48558160	48558160	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgtctgtggggtgtgtcGcagcgctctggcacctggcg	17	12	2	0	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	RNF114,NS,carcinoma,0,1	RNF114	NM_018683	exon2	c.G203A	p.R68H	TGTGTCGCAGCGC		47	3	0.06	38	0	0		0	1	132	0	0				A	48558160	G	A	48558160	3	1	66	1	0	0	0	0	1	0	0	0	13480	1087	38	1	209	1	RNF114	20	48558160	Missense_Mutation	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10	1233347	48558160	14467360	57	4642											
ERG	2078	ucsc.edu;bcgsc.ca	37	chr21	39947610	39947610	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	atatgagctgctgggtccggGacagtctgaatcatgtcctt	12	9	2	2	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	ERG	NM_004449	exon3	c.C15A	p.V5V	GTCCGGGACAGTC		28	4	0.14	28	0	0		78		1	0	0				T	39947610	G	T	39947610	2	4	66	1	0	0	0	0	0	0	0	1	5250	1161	41	3		3	ERG	21	39947610	Silent	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10		39947610	8182285	58	4643											
ZNF74	7625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	20759727	20759727	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgcaaagaagaaccggcccAggagcccatcatggagcggc	13	12	1	2	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_003426	exon5	c.A404T	p.Q135L	CGGCCCAGGAGCC		196	23	0.12	108	0	0				6	4	0.67				T	20759727	A	T	20759727	3	4	66	1	0	0	0	0	1	0	0	0	18176	188	7	5	422	5	ZNF74	22	20759727	Missense_Mutation	SNP	A	TCGA-2G-AALN-01A-11D-A42Y-10		20759727	30544839	59	4644											
OSBP2	23762	mdanderson.org	37	chr22	31285598	31285598	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catgaagaactgcatcggccGggagctctccaggatcccca	11	14	1	2	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	.	NM_030758	exon7	c.G1598T	p.R533L	TCGGCCGGGAGCT		77	4	0.05	45	0	0				13	0	0				T	31285598	G	T	31285598	3	4	66	1	0	0	0	0	1	0	0	0	11320	1116	39	1	1624	1	OSBP2	22	31285598	Missense_Mutation	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10	10525871	31285598	20018968	60	4645											
ZDHHC15	158866	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	74698772	74698772	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagatagacttccagtagGtccaggtaaagaacacaaag	9	7	0	3	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	ZDHHC15	NM_144969	exon3	c.C212A	p.T71N	CAGTAGGTCCAGG		73	5	0.07	28	0	0		65		6	0	0				T	74698772	G	T	74698772	3	4	66	1	0	0	0	0	1	0	0	0	17662	1261	44	3	917	3	ZDHHC15	23	74698772	Missense_Mutation	SNP	G	TCGA-2G-AALN-01A-11D-A42Y-10		74698772	80571788	61	4646											
HCFC1	3054	bcgsc.ca	37	chrX	153217302	153217302	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcgcttactctcagtggcCgttgagggcagcagcgccac	13	13	1	1	novel		TCGA-2G-AALN-01A-11D-A42Y-10	TCGA-2G-AALN-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	540debee-4ab6-4a72-a38d-21a2f4f90905	b8f3aa4c-e160-4a5a-a935-b66ecb5011f2	.	HCFC1	NM_005334	exon20	c.G5250A	p.T1750T	AGTGGCCGTTGAG		67	4	0.06	32	0	0		284		44	0	0				T	153217302	C	T	153217302	2	4	66	1	0	0	0	0	0	0	0	1	7031	639	23	1		1	HCFC1	23	153217302	Silent	SNP	C	TCGA-2G-AALN-01A-11D-A42Y-10	78518530	153217302	2053258	62	4647											
PRAMEF2	65122	mdanderson.org	37	chr1	12919682	12919682	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagaggactgtccaaggaCgggagagcaccagcccttaa	13	11	0	2	rs202143308	bycluster	TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_023014	exon3	c.C422T	p.T141M	CAAGGACGGGAGA		74	5	0.07	135	1	0.0074074074				0	0					T	12919682	C	T	12919682	3	4	67	1	0	0	0	0	1	0	0	0	12483	536	19	1	428	1	PRAMEF2	1	12919682	Missense_Mutation	SNP	C	TCGA-2G-AALO-01A-12D-A42Y-10		12919682	236330939	1	4648											
BCL2L15	440603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	114429213	114429213	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagaagcttccaattctccGttgaactggtcacccaacat	7	13	2	2	rs75493886	bycluster;by1000genomes	TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	BCL2L15,rectum,carcinoma,-1,2	BCL2L15	NM_001010922	exon2	c.C195T	p.N65N	TTCTCCGTTGAAC		72	6	0.08	81	0	0	0	-1	2	101	0	0				A	114429213	G	A	114429213	2	1	67	1	0	0	0	0	0	0	0	1	1371	1136	40	1		1	BCL2L15	1	114429213	Silent	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	101509531	114429213	134821408	2	4649											
TRIM46	80128	mdanderson.org	37	chr1	155156381	155156381	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaagatcctgctggggtcGggggcaagctcaaacgcagg	17	10	1	1	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_025058	exon10	c.G1995T	p.S665S	GGGGTCGGGGGCA		35	3	0.09	21	0	0				0	0					T	155156381	G	T	155156381	2	4	67	1	0	0	0	0	0	0	0	1	16581	1103	39	1		1	TRIM46	1	155156381	Silent	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	40727168	155156381	94094240	3	4650											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	186055461	186055461	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttgacctgtgaggtctctGgttttccacctcctgacctc	8	14	1	3	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	HMCN1,NS,carcinoma,-2,1	HMCN1	NM_031935	exon58	c.G8968A	p.G2990S	GTCTCTGGTTTTC		155	42	0.27	148	0	0		-2	1	0	0					A	186055461	G	A	186055461	3	1	67	1	0	0	0	0	1	0	0	0	7260	1348	47	3	9198	3	HMCN1	1	186055461	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	30899080	186055461	63195160	4	4651											
PROM2	150696	mdanderson.org	37	chr2	95953990	95953990	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cattgccacctgccagccccTctccggagccctggacaaca	8	19	1	0	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_001165977	exon21	c.T2276C	p.L759P	AGCCCCTCTCCGG		43	3	0.07	42	0	0				9	0	0				C	95953990	T	C	95953990	3	2	67	1	0	0	0	0	1	0	0	0	12607	1551	54	4	2358	4	PROM2	2	95953990	Missense_Mutation	SNP	T	TCGA-2G-AALO-01A-12D-A42Y-10		95953990	147245383	5	4652											
UBR3	130507	bcgsc.ca;mdanderson.org	37	chr2	170728847	170728847	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttccaagatttatattttGtcttattcagtacttaagag	5	6	3	2	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	UBR3	NM_172070	exon2	c.G647T	p.C216F	TATTTTGTCTTAT		88	5	0.06	91	0	0		182		5	0	0				T	170728847	G	T	170728847	3	4	67	1	0	0	0	0	1	0	0	0	16963	1377	48	3	653	3	UBR3	2	170728847	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	74774857	170728847	72470526	6	4653											
XRCC5	7520	mdanderson.org	37	chr2	216990649	216990649	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tctttattaagtgagagtctGagaaaactgtgcgtcttcaa	9	6	4	2	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_021141	exon7	c.G693T	p.L231L	GAGTCTGAGAAAA		43	3	0.07	57	0	0				184	0	0				T	216990649	G	T	216990649	2	4	67	1	0	0	0	0	0	0	0	1	17515	1277	45	3		3	XRCC5	2	216990649	Silent	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	46261802	216990649	26208724	7	4654											
LAMB2	3913	mdanderson.org	37	chr3	49161062	49161062	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtggcctccccaatttcaCgcctgcaatgatggagaggg	12	12	1	2	rs141988617		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_002292	exon25	c.G3800A	p.R1267H	ATTTCACGCCTGC		47	3	0.06	91	0	0	0			134	0	0				T	49161062	C	T	49161062	3	4	67	1	0	0	0	0	1	0	0	0	8649	536	19	1	1628	1	LAMB2	3	49161062	Missense_Mutation	SNP	C	TCGA-2G-AALO-01A-12D-A42Y-10		49161062	148861368	8	4655											
GSX2	170825	mdanderson.org	37	chr4	54966519	54966519	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacccctctcgacatgtcgcGctccttctatgtcgactcgc	7	18	2	0	rs377377329		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_133267	exon1	c.G8T	p.R3L	TGTCGCGCTCCTT		50	3	0.06	33	0	0				0	0					T	54966519	G	T	54966519	3	4	67	1	0	0	0	0	1	0	0	0	6890	1087	38	1	10	1	GSX2	4	54966519	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10		54966519	136187757	9	4656											
CASP3	836	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	185550512	185550512	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagtagcgtcaaaggaaaAggactcaaattctgttgcca	9	7	3	0	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	CASP3	NM_004346	exon8	c.T748C	p.F250L	AGGAAAAGGACTC		59	4	0.07	102	0	0		27		65	0	0				G	185550512	A	G	185550512	3	3	67	1	0	0	0	0	1	0	0	0	2690	72	3	4	89	4	CASP3	4	185550512	Missense_Mutation	SNP	A	TCGA-2G-AALO-01A-12D-A42Y-10	130583993	185550512	5603764	10	4657											
PDGFRB	5159	mdanderson.org	37	chr5	149512314	149512314	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagagcgagctgctcaccGggtctccgacacgttgcgcg	16	13	2	1	rs142621427	bycluster;by1000genomes;alternate_allele	TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_002609	exon7	c.C1126A	p.R376R	CTCACCGGGTCTC		48	3	0.06	56	0	0				71	0	0				T	149512314	G	T	149512314	2	4	67	1	0	0	0	0	0	0	0	1	11708	1130	39	1		1	PDGFRB	5	149512314	Silent	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10		149512314	31402946	11	4658											
HMMR	3161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	162901165	162901165	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acaacaggaacgtgaaaagcTtcaacaaaaagaattacaaa	6	7	1	2	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_001142556	exon10	c.T1007C	p.L336P	AAAAGCTTCAACA		241	15	0.06	298	0	0				10	2	0.2				C	162901165	T	C	162901165	3	2	67	1	0	0	0	0	1	0	0	0	7282	1609	56	4	1045	4	HMMR	5	162901165	Missense_Mutation	SNP	T	TCGA-2G-AALO-01A-12D-A42Y-10	13388851	162901165	18014095	12	4659											
CUL9	23113	mdanderson.org	37	chr6	43182824	43182824	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctcctatccaggtgctggAggcctggcagaagggtccaa	13	12	0	1	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_015089	exon30	c.A5696G	p.E1899G	TGCTGGAGGCCTG		32	4	0.13	30	0	0				13	0	0				G	43182824	A	G	43182824	3	3	67	1	0	0	0	0	1	0	0	0	4084	304	11	4	5810	4	CUL9	6	43182824	Missense_Mutation	SNP	A	TCGA-2G-AALO-01A-12D-A42Y-10		43182824	127932243	13	4660											
SP8	221833	broad.mit.edu;mdanderson.org	37	chr7	20824970	20824970	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgcccccgccgccgccgcCgctgcccccggaaactccgg	12	24	0	0	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	SP8	NM_182700	exon2	c.G466A	p.G156S	CGCCGCCGCTGCC		39	3	0.08	37	0	0		43		0	0					T	20824970	C	T	20824970	3	4	67	1	0	0	0	0	1	0	0	0	15023	652	23	1	1064	1	SP8	7	20824970	Missense_Mutation	SNP	C	TCGA-2G-AALO-01A-12D-A42Y-10		20824970	138313693	14	4661											
SP4	6671	broad.mit.edu;mdanderson.org	37	chr7	21468306	21468306	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgttgcagatcagaagaagGaggaggaggaggaggcggca	19	4	1	3	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	SP4,colon,carcinoma,0,1	SP4	NM_003112	exon2	c.G19A	p.E7K	AAGAAGGAGGAGG		50	3	0.06	47	0	0		91	1	1	0	0				A	21468306	G	A	21468306	3	1	67	1	0	0	0	0	1	0	0	0	15019	1175	41	3	25	3	SP4	7	21468306	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	643336	21468306	137670357	15	4662											
MTERF	7978	mdanderson.org	37	chr7	91503479	91503479	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attcaaccatctgtttattcAgatcaagactattggagaag	7	7	4	3	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_006980	exon3	c.T629C	p.L210P	TTATTCAGATCAA		81	4	0.05	61	0	0				13	0	0				G	91503479	A	G	91503479	3	3	67	1	0	0	0	0	1	0	0	0	9965	188	7	4	574	4	MTERF	7	91503479	Missense_Mutation	SNP	A	TCGA-2G-AALO-01A-12D-A42Y-10	70035173	91503479	67635184	16	4663											
MUC17	140453	mdanderson.org	37	chr7	100685848	100685848	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtagcaccctttcaacaccTtctgttgtcaccagcacacc	6	16	3	0	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	MUC17,NS,carcinoma,+2,1	MUC17	NM_001040105	exon3	c.T11151A	p.P3717P	AACACCTTCTGTT		42	3	0.07	45	0	0		2	1	133	0	0				A	100685848	T	A	100685848	2	1	67	1	0	0	0	0	0	0	0	1	10021	1596	56	5		5	MUC17	7	100685848	Silent	SNP	T	TCGA-2G-AALO-01A-12D-A42Y-10	9182369	100685848	58452815	17	4664											
HIPK2	28996	mdanderson.org	37	chr7	139257993	139257993	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggtggggaggtgggcagCggcagcggctgcagccagat	21	9	0	1	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_022740	exon15	c.G3277A	p.A1093T	GGGCAGCGGCAGC		16	2	0.13	15	0	0				0	0					T	139257993	C	T	139257993	3	4	67	1	0	0	0	0	1	0	0	0	7157	768	27	1	323	1	HIPK2	7	139257993	Missense_Mutation	SNP	C	TCGA-2G-AALO-01A-12D-A42Y-10	38572145	139257993	19880670	18	4665											
XKR5	389610	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	6679483	6679483	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccacgagcaggttgaacaGcctccagtggcaggtgctgt	13	13	0	1	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	XKR5	NM_207411	exon5	c.C715A	p.L239M	TGAACAGCCTCCA		60	5	0.08	59	0	0		20		0	0					T	6679483	G	T	6679483	1	4	67	0	1	0	0	0	0	0	0	0	17493	962	34	2		2	XKR5	8	6679483	RNA	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10		6679483	139684539	19	4666											
TNKS	8658	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	9623905	9623905	+	Frame_Shift_Del	DEL	A	A	-													aggaacaggctgccctacacAcaaggacaggtcatgctata					novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	TNKS	NM_003747	exon25	c.3709delC	p.H1237fs	CTACACACAAGGA		73	12	0.16	101	0	0		198		5	0	0				-	9623905	A	-	9623905	7	5	67	1	0	1	0	1	0	0	0	0	16378	159	6	0	3808	0	TNKS	8	9623905	Frame_Shift_Del	DEL	A	TCGA-2G-AALO-01A-12D-A42Y-10	2944422	9623905	136740117	20	4667											
KIAA0146	0	ucsc.edu	37	chr8	48508458	48508458	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgttgccaaagaagattcaGaaaaaacttgtgaagtgtac	9	5	1	4	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	KIAA0146	NM_001080394	exon9	c.G1183A	p.E395K	GATTCAGAAAAAA		147	1	0.01	108	1	0.0092592593		64		38	10	0.26				A	48508458	G	A	48508458	3	1	67	1	0	0	0	0	1	0	0	0	8198	943	33	3	1217	3	KIAA0146	8	48508458	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	38884553	48508458	97855564	21	4668											
NFIB	4781	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	14116325	14116325	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tggccaggcactttccctacTacttgaccactgccgttagg	9	14	0	1	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	NFIB	NM_001190737	exon9	c.A1266T	p.V422V	CCCTACTACTTGA		46	14	0.3	74	1	0.0135135135		91		2	1	0.5				A	14116325	T	A	14116325	2	1	67	1	0	0	0	0	0	0	0	1	10417	1537	53	5		5	NFIB	9	14116325	Silent	SNP	T	TCGA-2G-AALO-01A-12D-A42Y-10		14116325	127097106	22	4669											
PRSS3	5646	broad.mit.edu	37	chr9	33794809	33794809	+	Missense_Mutation	SNP	G	G	A													gatgcacatgagagagacaaGtggcttcacattgaagaagg					rs201061108		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	PRSS3	NM_001197097	exon2	c.G20A	p.S7N	AGACAAGTGGCTT		48	9	0.19	74	2	0.027027027		79		1	0	0				A	33794809	G	A	33794809	3	1	67	1	0	0	0	0	1	0	0	0	12670	1044	36	3		3	PRSS3	9	33794809	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	19678484	33794809	107418622	23	4670	11	2									
PRSS3	5646	broad.mit.edu	37	chr9	33794812	33794812	+	Missense_Mutation	SNP	G	G	T													gcacatgagagagacaagtgGcttcacattgaagaagggga					rs199873220		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	PRSS3	NM_001197097	exon2	c.G23T	p.G8V	CAAGTGGCTTCAC		50	9	0.18	80	2	0.025		79		1	0	0				T	33794812	G	T	33794812	3	4	67	1	0	0	0	0	1	0	0	0	12670	1218	42	2		2	PRSS3	9	33794812	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	3	33794812	107418619	24	4671	11	2									
MCM10	55388	mdanderson.org	37	chr10	13239659	13239659	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aattaagggcaaaaggccagGttcttacaaaaacaaaccca	7	9	1	0	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_182751	exon15	c.G2014T	p.V672F	GGCCAGGTTCTTA		44	3	0.07	79	0	0				4	0	0				T	13239659	G	T	13239659	3	4	67	1	0	0	0	0	1	0	0	0	9434	1261	44	3	2068	3	MCM10	10	13239659	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10		13239659	122295088	25	4672											
DNAJC1	64215	mdanderson.org	37	chr10	22207710	22207710	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagaggtacattttacctGgatgaggtgaggtaatgctt	12	4	0	3	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_022365	exon6	c.C727A	p.Q243K	TTACCTGGATGAG		46	3	0.07	54	0	0				16	0	0				T	22207710	G	T	22207710	3	4	67	1	0	0	0	0	1	0	0	0	4655	1357	47	3	965	3	DNAJC1	10	22207710	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	8968051	22207710	113327037	26	4673											
CSGALNACT2	55454	hgsc.bcm.edu	37	chr10	43659372	43659372	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaagaatttaatcgtggaCgaggactaaatgtgggtgcc	13	5	0	2	rs76607193	bycluster;byfrequency	TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	CSGALNACT2,trunk,malignant_melanoma,0,1	CSGALNACT2	NM_018590	exon5	c.C1039T	p.R347X	CGTGGACGAGGAC		82	4	0.05	89	0	0	0.003	0	1	10	0	0				T	43659372	C	T	43659372	4	4	67	1	0	0	0	0	0	1	0	0	3964	528	19	1	1053	1	CSGALNACT2	10	43659372	Nonsense_Mutation	SNP	C	TCGA-2G-AALO-01A-12D-A42Y-10	21451662	43659372	91875375	27	4674											
SLIT1	6585	mdanderson.org	37	chr10	98807466	98807466	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttctgccgtggactgggGgatgcgctcagggatcttgg	17	9	3	0	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_003061	exon16	c.C1615A	p.P539T	ACTGGGGGATGCG		27	3	0.11	43	0	0				0	0					T	98807466	G	T	98807466	3	4	67	1	0	0	0	0	1	0	0	0	14792	1232	43	3	3077	3	SLIT1	10	98807466	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	55148094	98807466	36727281	28	4675											
FBXL15	79176	mdanderson.org	37	chr10	104181702	104181702	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcggagtgtggcgttgggCggctgcgggcaactgagtcg	20	9	0	1	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_024326	exon3	c.C366T	p.G122G	GTTGGGCGGCTGC		10	2	0.2	18	0	0				44	0	0				T	104181702	C	T	104181702	2	4	67	1	0	0	0	0	0	0	0	1	5743	755	27	1		1	FBXL15	10	104181702	Silent	SNP	C	TCGA-2G-AALO-01A-12D-A42Y-10	5374236	104181702	31353045	29	4676											
OBFC1	79991	mdanderson.org	37	chr10	105659887	105659887	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctctgactcggatcgtGtccccgatctctatctttgt	8	14	3	1	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_024928	exon5	c.C390A	p.D130E	GATCGTGTCCCCG		46	3	0.07	70	0	0				41	0	0				T	105659887	G	T	105659887	3	4	67	1	0	0	0	0	1	0	0	0	10854	1368	48	3	740	3	OBFC1	10	105659887	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	1478185	105659887	29874860	30	4677											
PGA3	643834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	60971070	60971070	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgggtctggtggcaCtctctgagtgcatcatgtac	13	10	3	1	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_001079807	exon1	c.C34A	p.L12I	GTGGCACTCTCTG		184	85	0.46	239	1	0.0041841004				0	0					A	60971070	C	A	60971070	3	1	67	1	0	0	0	0	1	0	0	0	11818	565	20	3	36	3	PGA3	11	60971070	Missense_Mutation	SNP	C	TCGA-2G-AALO-01A-12D-A42Y-10		60971070	74035446	31	4678											
LRRC32	2615	broad.mit.edu;mdanderson.org	37	chr11	76370933	76370933	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctgagtggattcccctgCaggtagaggcgccggaggct	16	11	0	2	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	LRRC32	NM_005512	exon3	c.G1704A	p.L568L	CCCCTGCAGGTAG		25	3	0.12	35	0	0		74		34	3	0.09				T	76370933	C	T	76370933	2	4	67	1	0	0	0	0	0	0	0	1	9031	697	25	2		2	LRRC32	11	76370933	Silent	SNP	C	TCGA-2G-AALO-01A-12D-A42Y-10	15399863	76370933	58635583	32	4679											
GRIA4	0	broad.mit.edu	37	chr11	105769101	105769101	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaatcaaactaatggatcGctggaagaaactagatcaga	10	6	2	3	rs375247322	alternate_allele	TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	GRIA4	NM_001077244	exon7	c.G833T	p.R278L	TGGATCGCTGGAA		120	4	0.03	137	0	0		380		0	0					T	105769101	G	T	105769101	3	4	67	1	0	0	0	0	1	0	0	0	6810	1087	38	1	855	1	GRIA4	11	105769101	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	29398168	105769101	29237415	33	4680											
B3GAT1	27087	bcgsc.ca	37	chr11	134253610	134253610	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctgtaggtgttgtcgtcGtcggcgaagtagaccacgcc	15	10	0	1	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	B3GAT1	NM_054025	exon3	c.C585A	p.D195E	GTCGTCGTCGGCG		46	4	0.09	57	0	0		49		0	0					T	134253610	G	T	134253610	3	4	67	1	0	0	0	0	1	0	0	0	1251	1136	40	1	431	1	B3GAT1	11	134253610	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	28484509	134253610	752906	34	4681											
GRIN2B	2904	broad.mit.edu	37	chr12	13761690	13761690	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcccctttgggttctgcacAggtacggagttgttaaacac	11	10	1	0	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	GRIN2B	NM_000834	exon9	c.T1857C	p.P619P	CTGCACAGGTACG		265	9	0.03	108	0	0		303		0	0					G	13761690	A	G	13761690	2	3	67	1	0	0	0	0	0	0	0	1	6820	175	7	4		4	GRIN2B	12	13761690	Silent	SNP	A	TCGA-2G-AALO-01A-12D-A42Y-10		13761690	120090205	35	4682											
GJA3	2700	mdanderson.org	37	chr13	20717246	20717246	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcgtagcagacgttctcgCagcccggctgctgggtgttg	15	11	1	1	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_021954	exon2	c.G182T	p.C61F	TTCTCGCAGCCCG		38	3	0.08	68	0	0				0	0					A	20717246	C	A	20717246	3	1	67	1	0	0	0	0	1	0	0	0	6443	710	25	2	1129	2	GJA3	13	20717246	Missense_Mutation	SNP	C	TCGA-2G-AALO-01A-12D-A42Y-10		20717246	94452632	36	4683											
CAPN3	825	mdanderson.org	37	chr15	42702861	42702861	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgaaatgcagtcaacgacGcaggtgctgagaaggaaggg	16	7	1	1	rs137927542	bycluster;by1000genomes;alternate_allele	TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_000070	exon21	c.G2260T	p.A754S	AACGACGCAGGTG		39	3	0.08	34	0	0				17	0	0				T	42702861	G	T	42702861	3	4	67	1	0	0	0	0	1	0	0	0	2646	1087	38	1	2394	1	CAPN3	15	42702861	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10		42702861	59828531	37	4684											
ALPK3	57538	mdanderson.org	37	chr15	85400648	85400648	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgacttctcagcacgggagCacagccaccttcctgccctc	8	19	1	0	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_020778	exon6	c.C3285T	p.S1095S	CGGGAGCACAGCC		33	3	0.09	54	0	0				4	0	0				T	85400648	C	T	85400648	2	4	67	1	0	0	0	0	0	0	0	1	542	709	25	2		2	ALPK3	15	85400648	Silent	SNP	C	TCGA-2G-AALO-01A-12D-A42Y-10	42697787	85400648	17130744	38	4685											
CHD2	1106	mdanderson.org	37	chr15	93540280	93540280	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaacatgaagaggagtttgAgatgctgcataaatctatcc	9	8	1	3	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_001271	exon29	c.A3689G	p.E1230G	AGTTTGAGATGCT		35	3	0.09	66	0	0				14	0	0				G	93540280	A	G	93540280	3	3	67	1	0	0	0	0	1	0	0	0	3347	304	11	4	3803	4	CHD2	15	93540280	Missense_Mutation	SNP	A	TCGA-2G-AALO-01A-12D-A42Y-10	8139632	93540280	8991112	39	4686											
PHKB	5257	broad.mit.edu	37	chr16	47694447	47694447	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggagctgtggtagaacaaCttgatttcctacgaatcagt	10	8	1	2	rs376951504		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	PHKB	NM_000293	exon21	c.C2002T	p.L668F	GAACAACTTGATT		95	4	0.04	127	0	0		298		33	1	0.03				T	47694447	C	T	47694447	3	4	67	1	0	0	0	0	1	0	0	0	11892	565	20	3	2143	3	PHKB	16	47694447	Missense_Mutation	SNP	C	TCGA-2G-AALO-01A-12D-A42Y-10		47694447	42660306	40	4687											
SNX20	124460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	50707856	50707856	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgcttcctgggaaactccaCgtcttcgatctcctccctga	8	15	2	1	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	SNX20,NS,carcinoma,+1,1	SNX20	NM_182854	exon4	c.G412T	p.V138L	ACTCCACGTCTTC		40	8	0.2	30	0	0		1	1	3	0	0				A	50707856	C	A	50707856	3	1	67	1	0	0	0	0	1	0	0	0	14945	536	19	1	685	1	SNX20	16	50707856	Missense_Mutation	SNP	C	TCGA-2G-AALO-01A-12D-A42Y-10	3013409	50707856	39646897	41	4688											
AMFR	267	mdanderson.org	37	chr16	56401360	56401360	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtgcgggttttacctgaGcagaagtttctccctcttcc	10	11	2	3	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_001144	exon12	c.C1595A	p.A532D	ACCTGAGCAGAAG		38	3	0.08	39	0	0				111	0	0				T	56401360	G	T	56401360	3	4	67	1	0	0	0	0	1	0	0	0	567	971	34	2	348	2	AMFR	16	56401360	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	5693504	56401360	33953393	42	4689											
ARL2BP	23568	mdanderson.org	37	chr16	57283743	57283743	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gattcctgagttcaacatggCagccttcaccacaacattac	6	13	2	1	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_012106	exon4	c.C272T	p.A91V	ACATGGCAGCCTT		42	3	0.07	44	0	0				67	0	0				T	57283743	C	T	57283743	3	4	67	1	0	0	0	0	1	0	0	0	933	710	25	2	286	2	ARL2BP	16	57283743	Missense_Mutation	SNP	C	TCGA-2G-AALO-01A-12D-A42Y-10	882383	57283743	33071010	43	4690											
WDR16	146845	mdanderson.org	37	chr17	9480015	9480015	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcagaacctcccaaggatGgataacaaaatttcgccgga	8	10	1	1	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_001080556	exon1	c.G3T	p.M1I	AAGGATGGATAAC		42	3	0.07	37	0	0				0	0					T	9480015	G	T	9480015	3	4	67	1	0	0	0	0	1	0	0	0	17335	1348	47	3	5	3	WDR16	17	9480015	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10		9480015	71715195	44	4691											
ANKFN1	162282	mdanderson.org	37	chr17	54558038	54558038	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaacatacagagaggaatgGgaatggatccaaaagctttc	10	7	1	1	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	ANKFN1,right_upper_lobe,carcinoma,0,1	ANKFN1	NM_153228	exon16	c.G1959A	p.W653X	GGAATGGGAATGG		41	3	0.07	42	0	0		0	1	0	0					A	54558038	G	A	54558038	4	1	67	1	0	0	0	0	0	1	0	0	621	1241	43	3	2021	3	ANKFN1	17	54558038	Nonsense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	45078023	54558038	26637172	45	4692											
CLTC	1213	mdanderson.org	37	chr17	57733338	57733338	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaaacaatttttgttactGcacctcatgaagccacagct	7	10	1	2	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_004859	exon6	c.G919A	p.A307T	GTTACTGCACCTC		41	3	0.07	42	0	0				78	0	0				A	57733338	G	A	57733338	3	1	67	1	0	0	0	0	1	0	0	0	3589	1319	46	2	941	2	CLTC	17	57733338	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	3175300	57733338	23461872	46	4693											
KCTD1	284252	broad.mit.edu;mdanderson.org	37	chr18	24127403	24127403	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcgtcgctgctctcggcGcgcttcttgctccacgacga	10	17	2	0	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	KCTD1	NM_001142730	exon1	c.C1098A	p.R366R	CTCGGCGCGCTTC		46	3	0.07	55	0	0		76		5	0	0				T	24127403	G	T	24127403	2	4	67	1	0	0	0	0	0	0	0	1	8139	1074	38	1		1	KCTD1	18	24127403	Silent	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10		24127403	53949845	47	4694											
SMAD4	4089	mdanderson.org	37	chr18	48586287	48586287	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccatttccaatcatcctgGtaagtgtatttcaaaattga	5	9	2	1	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_005359	exon8	c.955+1G>T	.	ATCCTGGTAAGTG		44	3	0.07	82	0	0				0	0					T	48586287	G	T	48586287	5	4	67	1	0	0	0	0	0	0	1	0	14813	1275	44	3	982	3	SMAD4	18	48586287	Splice_Site	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	24458884	48586287	29490961	48	4695											
SERPINB10	5273	broad.mit.edu;bcgsc.ca	37	chr18	61587085	61587085	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctgttaactttgtggaaGcttctgatcaaatcagaaag	9	7	3	2	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	SERPINB10	NM_005024	exon4	c.G436T	p.A146S	GTGGAAGCTTCTG		83	6	0.07	111	1	0.009009009		53		0	0					T	61587085	G	T	61587085	3	4	67	1	0	0	0	0	1	0	0	0	14150	971	34	2	450	2	SERPINB10	18	61587085	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	13000798	61587085	16490163	49	4696											
MCOLN1	57192	mdanderson.org	37	chr19	7595282	7595282	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggccgcagcagcctggtGtggctcttctcccagctcta	12	15	3	0	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_020533	exon12	c.G1470T	p.V490V	CCTGGTGTGGCTC		21	3	0.14	46	0	0				35	0	0				T	7595282	G	T	7595282	2	4	67	1	0	0	0	0	0	0	0	1	9444	1364	48	3		3	MCOLN1	19	7595282	Silent	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10		7595282	51533701	50	4697											
ZBTB32	27033	mdanderson.org	37	chr19	36205860	36205860	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggaagaggcatgctggaGggctcgaggggacagggcta	19	8	0	1	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_014383	exon2	c.G332T	p.R111M	GCTGGAGGGCTCG		31	3	0.1	41	0	0				1	0	0				T	36205860	G	T	36205860	3	4	67	1	0	0	0	0	1	0	0	0	17593	1000	35	3	334	3	ZBTB32	19	36205860	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	28610578	36205860	22923123	51	4698											
HKR1	284459	mdanderson.org	37	chr19	37853502	37853502	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctccagaagacacaaactGgggagacaccttacatgtac	9	12	0	3	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	HKR1,NS,carcinoma,0,1	HKR1	NM_181786	exon6	c.G805T	p.G269W	CAAACTGGGGAGA		46	3	0.07	66	0	0		0	1	32	0	0				T	37853502	G	T	37853502	3	4	67	1	0	0	0	0	1	0	0	0	7234	1348	47	3	819	3	HKR1	19	37853502	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	1647642	37853502	21275481	52	4699											
MARK4	57787	mdanderson.org	37	chr19	45762334	45762334	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgttgccggaactccatcGcctcctgtcccgaggagcag	11	17	0	0	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_001199867	exon2	c.G139T	p.A47S	TCCATCGCCTCCT		38	3	0.08	59	0	0				16	0	0				T	45762334	G	T	45762334	3	4	67	1	0	0	0	0	1	0	0	0	9364	1087	38	1	145	1	MARK4	19	45762334	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	7908832	45762334	13366649	53	4700											
ZNF264	9422	mdanderson.org	37	chr19	57723935	57723935	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtgcgtggagtgtggaaaGgccttcacccgcatgtcggg	17	9	1	0	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_003417	exon4	c.G1470T	p.K490N	TGGAAAGGCCTTC		42	3	0.07	68	0	0				2	0	0				T	57723935	G	T	57723935	3	4	67	1	0	0	0	0	1	0	0	0	17861	991	35	3	1484	3	ZNF264	19	57723935	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	11961601	57723935	1405048	54	4701											
CHD6	0	broad.mit.edu;mdanderson.org	37	chr20	40120435	40120435	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgagacttctcaagtttctGccaggagtctgaagcaggcc	12	11	3	2	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	CHD6	NM_032221	exon11	c.C1339A	p.Q447K	GTTTCTGCCAGGA		72	4	0.06	53	0	0		312		6	0	0				T	40120435	G	T	40120435	3	4	67	1	0	0	0	0	1	0	0	0	3351	1328	46	2	6916	2	CHD6	20	40120435	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10		40120435	22905085	55	4702											
MCM3AP	8888	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr21	47695160	47695160	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacgggtctcccgcatgtaCctctccttctcaggacacat	7	16	3	0	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	MCM3AP	NM_003906	exon6	c.G1938T	p.R646S	CATGTACCTCTCC		135	10	0.07	118	1	0.0084745763		146		39	2	0.05				A	47695160	C	A	47695160	3	1	67	1	0	0	0	0	1	0	0	0	9437	506	18	3	4096	3	MCM3AP	21	47695160	Missense_Mutation	SNP	C	TCGA-2G-AALO-01A-12D-A42Y-10		47695160	434735	56	4703											
SSTR3	6753	mdanderson.org	37	chr22	37602632	37602632	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacttctccccagtggaaGcctcttggggtaggagctgc	14	11	2	0	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	.	NM_001051	exon2	c.C1211A	p.A404D	GTGGAAGCCTCTT		31	3	0.1	25	0	0				0	0					T	37602632	G	T	37602632	3	4	67	1	0	0	0	0	1	0	0	0	15254	971	34	2	49	2	SSTR3	22	37602632	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10		37602632	13701934	57	4704											
MAPK8IP2	23542	broad.mit.edu;mdanderson.org	37	chr22	51045123	51045123	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	actgaccgtccacctgcgccCtcctgcctcctgtgacctcg	8	20	0	2	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	MAPK8IP2	.	.	.	.	TGCGCCCTCCTGC		52	4	0.08	70	0	0		78		1	1	1				A	51045123	C	A	51045123	3	1	67	1	0	0	0	0	1	0	0	0	9334	681	24	3	2285	3	MAPK8IP2	22	51045123	Missense_Mutation	SNP	C	TCGA-2G-AALO-01A-12D-A42Y-10	13442491	51045123	259443	58	4705											
BCOR	54880	broad.mit.edu	37	chrX	39916463	39916463	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccatattcaaggaggtgtcGcacaatgttgagccagcccc	11	12	1	1	rs199676230	by1000genomes;alternate_allele	TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	BCOR	NM_001123385	exon11	c.C4540T	p.R1514X	GGTGTCGCACAAT		183	4	0.02	119	0	0		351		26	0	0				A	39916463	G	A	39916463	4	1	67	1	0	0	0	0	0	1	0	0	1384	1095	38	1	747	1	BCOR	23	39916463	Nonsense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10		39916463	115354097	59	4706											
STARD8	9754	broad.mit.edu	37	chrX	67940201	67940201	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	catccacgtgcagcgcacggGccagccactgccacagagca	11	17	0	1	rs201883068		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	STARD8	NM_001142503	exon8	c.G1985C	p.G662A	GCACGGGCCAGCC		172	36	0.21	87	14	0.1609195402		282		2	0	0				C	67940201	G	C	67940201	3	2	67	1	0	0	0	0	1	0	0	0	15318	1203	42	5	2015	5	STARD8	23	67940201	Missense_Mutation	SNP	G	TCGA-2G-AALO-01A-12D-A42Y-10	28023738	67940201	87330359	60	4707											
BRWD3	254065	broad.mit.edu	37	chrX	79932398	79932398	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctcctctccctcttccccTccccctagtgccacctccac	2	25	2	0	novel		TCGA-2G-AALO-01A-12D-A42Y-10	TCGA-2G-AALO-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f1e9dc7f-1736-448c-b749-3382f1c9ec34	c3b27ff2-b769-4ef1-bb6c-7faccf2a04ec	.	BRWD3	NM_153252	exon41	c.A5119G	p.R1707G	TTCCCCTCCCCCT		136	4	0.03	72	2	0.0277777778		251		1	0	0				C	79932398	T	C	79932398	3	2	67	1	0	0	0	0	1	0	0	0	1528	1550	54	4	293	4	BRWD3	23	79932398	Missense_Mutation	SNP	T	TCGA-2G-AALO-01A-12D-A42Y-10	11992197	79932398	75338162	61	4708											
PLEKHG5	57449	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	6537598	6537598	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cctgtgctcaccttgtggggGaaggtcgaagcggacatgcc	15	11	1	0	rs140687324	bycluster;byfrequency;by1000genomes	TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	PLEKHG5	NM_001265592	exon3	c.C271A	p.P91T	GTGGGGGAAGGTC		35	5	0.14	53	0	0		66		6	1	0.17				T	6537598	G	T	6537598	3	4	68	1	0	0	0	0	1	0	0	0	12120	1174	41	3	3066	3	PLEKHG5	1	6537598	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10		6537598	242713023	1	4709											
SLC2A1	6513	mdanderson.org	37	chr1	43395320	43395320	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caccacagcgatgaggatggGctggcggtaggcgggggagc	20	9	0	1	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_006516	exon6	c.C811T	p.P271S	GGATGGGCTGGCG		43	3	0.07	56	0	0				1618	0	0				A	43395320	G	A	43395320	3	1	68	1	0	0	0	0	1	0	0	0	14592	1203	42	2	687	2	SLC2A1	1	43395320	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	36857722	43395320	205855301	2	4710											
MTF2	22823	broad.mit.edu;ucsc.edu	37	chr1	93580262	93580262	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	taggagccactggaagtgggGaaatggtctgtacaatatgt	14	5	1	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	MTF2	NM_001164392	exon4	c.G304T	p.E102X	AGTGGGGAAATGG		202	58	0.29	177	1	0.0056497175		51		27	7	0.26				T	93580262	G	T	93580262	4	4	68	1	0	0	0	0	0	1	0	0	9970	1175	41	3	318	3	MTF2	1	93580262	Nonsense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	50184942	93580262	155670359	3	4711											
NUDT17	200035	hgsc.bcm.edu	37	chr1	145586679	145586679	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtaagctgcacttttacaCggtgggggtgttctgtggag	16	6	1	0	rs150364859	bycluster;byfrequency	TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	NUDT17,NS,carcinoma,-1,1	NUDT17	NM_001012758	exon8	c.G897T	p.P299P	TTTACACGGTGGG		70	5	0.07	118	2	0.0169491525		-1	1	4	0	0				A	145586679	C	A	145586679	2	1	68	1	0	0	0	0	0	0	0	1	10781	523	19	1		1	NUDT17	1	145586679	Silent	SNP	C	TCGA-2G-AALP-01A-12D-A42Y-10	52006417	145586679	103663942	4	4712											
RASAL2	9462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr1	178063808	178063808	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagtccgtgtgccagcaaCagagctgggtccgggtgtac	16	10	0	1	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_170692	exon1	c.C181T	p.Q61X	CAGCAACAGAGCT		219	52	0.24	212	0	0				1	1	1				T	178063808	C	T	178063808	4	4	68	1	0	0	0	0	0	1	0	0	13115	479	17	3	183	3	RASAL2	1	178063808	Nonsense_Mutation	SNP	C	TCGA-2G-AALP-01A-12D-A42Y-10	32477129	178063808	71186813	5	4713											
CENPF	1063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	214788200	214788200	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aaatgaaaaaaccgagggtaCaaacctgaaaagggagaatc	10	6	0	3	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_016343	exon3	c.C188G	p.T63R	AGGGTACAAACCT		271	68	0.25	302	0	0				2	0	0				G	214788200	C	G	214788200	3	3	68	1	0	0	0	0	1	0	0	0	3253	478	17	5	194	5	CENPF	1	214788200	Missense_Mutation	SNP	C	TCGA-2G-AALP-01A-12D-A42Y-10	36724392	214788200	34462421	6	4714											
FBXO41	150726	mdanderson.org	37	chr2	73493772	73493772	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcgctggcctcccgcgccGccgtctccttcaggaactgg	13	17	2	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001080410	exon2	c.C944T	p.A315V	CGCGCCGCCGTCT		35	3	0.09	34	0	0				0	0					A	73493772	G	A	73493772	3	1	68	1	0	0	0	0	1	0	0	0	5782	1087	38	1	1727	1	FBXO41	2	73493772	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10		73493772	169705601	7	4715											
LRRTM4	80059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	77746912	77746912	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcaagctctctgagcacccGtgagcataacaagcagcagt	11	12	1	2	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	LRRTM4_ENST00000409911,NS,carcinoma,0,10	LRRTM4_ENST00000409911	NM_024993	exon3	c.C83G	p.T28R	GCACCCGTGAGCA		141	38	0.27	184	0	0		0	10	0	0					C	77746912	G	C	77746912	3	2	68	1	0	0	0	0	1	0	0	0	9086	1145	40	5	1703	5	LRRTM4	2	77746912	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	4253140	77746912	165452461	8	4716											
IL18RAP	8807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	103061722	103061722	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aagtcactcagcgtgatcttCgcaggaagtttgtttgcttt	10	8	3	1	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	IL18RAP,NS,carcinoma,0,2	IL18RAP	NM_003853	exon9	c.C994T	p.R332C	GATCTTCGCAGGA		118	27	0.23	165	0	0		0	2	1	0	0				T	103061722	C	T	103061722	3	4	68	1	0	0	0	0	1	0	0	0	7691	884	31	1	1020	1	IL18RAP	2	103061722	Missense_Mutation	SNP	C	TCGA-2G-AALP-01A-12D-A42Y-10	25314810	103061722	140137651	9	4717											
MALL	7851	broad.mit.edu	37	chr2	110849314	110849314	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggtatactatgtgggtggCggctaccatggtccagacca	15	9	0	1	rs141817647	bycluster;byfrequency	TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	MALL	NM_005434	exon2	c.G139A	p.A47T	GGGTGGCGGCTAC		144	5	0.03	131	0	0		14		2	0	0				T	110849314	C	T	110849314	3	4	68	1	0	0	0	0	1	0	0	0	9250	768	27	1	334	1	MALL	2	110849314	Missense_Mutation	SNP	C	TCGA-2G-AALP-01A-12D-A42Y-10	7787592	110849314	132350059	10	4718											
PSD4	23550	mdanderson.org	37	chr2	113956425	113956425	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccagcgcagattcgtgcgGcccatcctgcccgtgggccc	12	18	0	1	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_012455	exon15	c.G2733T	p.R911R	CGTGCGGCCCATC		13	2	0.15	8	0	0				2	0	0				T	113956425	G	T	113956425	2	4	68	1	0	0	0	0	0	0	0	1	12697	1190	42	2		2	PSD4	2	113956425	Silent	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	3107111	113956425	129242948	11	4719											
SCG2	7857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	224463779	224463779	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tagggattataatctgggctGctttcttccttatgagcttg	10	7	2	1	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_003469	exon2	c.C222T	p.S74S	TGGGCTGCTTTCT		218	40	0.18	216	0	0				3	1	0.33				A	224463779	G	A	224463779	2	1	68	1	0	0	0	0	0	0	0	1	13943	1310	46	2		2	SCG2	2	224463779	Silent	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	110507354	224463779	18735594	12	4720											
INPP5D	3635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	233925276	233925276	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaaggacgggagcttcctcGtgcgtgccagcgagtccatc	14	13	0	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	.	.	.	.	TTCCTCGTGCGTG		207	47	0.23	260	0	0				0	0					C	233925276	G	C	233925276	3	2	68	1	0	0	0	0	1	0	0	0	7799	1145	40	5	90	5	INPP5D	2	233925276	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	9461497	233925276	9274097	13	4721											
SEMA5B	54437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	122645325	122645325	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttatagtagaaggggacctcGcccgggcgggagcagttgag	17	8	0	2	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	SEMA5B_ENST00000451055,NS,malignant_melanoma,-2,3	SEMA5B_ENST00000451055	NM_001256347	exon9	c.C1212T	p.G404G	GACCTCGCCCGGG		125	34	0.27	133	0	0		-2	3	5	3	0.6				A	122645325	G	A	122645325	2	1	68	1	0	0	0	0	0	0	0	1	14091	1074	38	1		1	SEMA5B	3	122645325	Silent	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10		122645325	75377105	14	4722											
GSX2	170825	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	54968011	54968021	+	Frame_Shift_Del	DEL	GCACTACGCGC	GCACTACGCGC	-													aagtgcgtcgggagccaggtGcactacgcgcgctccgagga					novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	GCACTACGCGC	GCACTACGCGC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_133267	exon2	c.836_846del	p.279_282del	CCAGGTGCACTAC		105	30	0.29	202	0	0				0	0					-	54968021	GCACTACGCGC	-	54968011	7	5	68	1	0	1	0	1	0	0	0	0	6890	1306	46	0	843	0	GSX2	4	54968011	Frame_Shift_Del	DEL	GCACTACGCGC	TCGA-2G-AALP-01A-12D-A42Y-10		54968011	136186265	15	4723											
CDK7	1022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	68530860	68530860	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agaagctggacttccttgggGagggacaggtgaggctctct	16	8	1	2	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001799	exon1	c.G58A	p.E20K	CTTGGGGAGGGAC		127	47	0.37	198	0	0				72	31	0.43				A	68530860	G	A	68530860	3	1	68	1	0	0	0	0	1	0	0	0	3171	1175	41	3	60	3	CDK7	5	68530860	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10		68530860	112384400	16	4724											
BDP1	55814	broad.mit.edu	37	chr5	70806755	70806755	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctgttgttgaagaaatggAggcagatttgaaagaaactg	14	3	0	5	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	BDP1	NM_018429	exon17	c.A3836G	p.E1279G	AAATGGAGGCAGA		109	4	0.04	143	0	0		204		0	0					G	70806755	A	G	70806755	3	3	68	1	0	0	0	0	1	0	0	0	1393	304	11	4	3902	4	BDP1	5	70806755	Missense_Mutation	SNP	A	TCGA-2G-AALP-01A-12D-A42Y-10	2275895	70806755	110108505	17	4725											
TXNDC15	79770	mdanderson.org	37	chr5	134223555	134223555	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acacccaaggcgatcacatgGtgatgctgtctgtgattcct	10	11	2	2	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_024715	exon2	c.G274T	p.V92L	CACATGGTGATGC		126	5	0.04	235	0	0				22	0	0				T	134223555	G	T	134223555	3	4	68	1	0	0	0	0	1	0	0	0	16855	1261	44	3	280	3	TXNDC15	5	134223555	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	63416800	134223555	46691705	18	4726											
PCDHGB7	56099	mdanderson.org	37	chr5	140799086	140799086	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gcctgcgcgtgttggtgggcGaccgtaacgacaacgcaccg	15	13	0	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_032101	exon1	c.G1660T	p.D554Y	GTGGGCGACCGTA		53	3	0.06	75	0	0				2	0	0				T	140799086	G	T	140799086	3	4	68	1	0	0	0	0	1	0	0	0	11614	1058	37	1	1662	1	PCDHGB7	5	140799086	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	6575531	140799086	40116174	19	4727											
ARAP3	64411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	141059697	141059697	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacactcctggtcccccgagGgctgggctcagcccaggtct	13	16	2	0	rs200318347	byfrequency	TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_022481	exon2	c.C357T	p.A119A	CCCGAGGGCTGGG		39	18	0.46	56	0	0	0.005			15	8	0.53				A	141059697	G	A	141059697	2	1	68	1	0	0	0	0	0	0	0	1	837	1219	43	3		3	ARAP3	5	141059697	Silent	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	260611	141059697	39855563	20	4728											
CDX1	1044	mdanderson.org	37	chr5	149546520	149546520	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagcctcggcctgggcccGcaagcctacggccccccggc	13	21	0	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001804	exon1	c.G81A	p.P27P	GGGCCCGCAAGCC		19	3	0.16	17	0	0				8	0	0				A	149546520	G	A	149546520	2	1	68	1	0	0	0	0	0	0	0	1	3204	1074	38	1		1	CDX1	5	149546520	Silent	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	8486823	149546520	31368740	21	4729											
RBM22	55696	mdanderson.org	37	chr5	150075147	150075147	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttatcctctggtgggtccaGccgaggcattgttgaagccc	12	11	1	1	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_018047	exon7	c.C667A	p.L223M	GGTCCAGCCGAGG		89	4	0.04	138	0	0				49	0	0				T	150075147	G	T	150075147	3	4	68	1	0	0	0	0	1	0	0	0	13173	962	34	2	615	2	RBM22	5	150075147	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	528627	150075147	30840113	22	4730											
EBF1	1879	mdanderson.org	37	chr5	158524093	158524093	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttggatttccgcagattGgaaggcggctgcttctcaaa	12	8	1	1	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_024007	exon2	c.C180A	p.S60S	CAGATTGGAAGGC		50	3	0.06	71	0	0				1	0	0				T	158524093	G	T	158524093	2	4	68	1	0	0	0	0	0	0	0	1	4906	1335	47	3		3	EBF1	5	158524093	Silent	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	8448946	158524093	22391167	23	4731											
ZFP2	80108	broad.mit.edu	37	chr5	178358837	178358837	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagagcatgaatcttactGtccatcaacgaactcacacc	6	13	4	2	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	ZFP2	NM_030613	exon5	c.G523T	p.V175F	CTTACTGTCCATC		61	3	0.05	82	0	0		70		0	0					T	178358837	G	T	178358837	3	4	68	1	0	0	0	0	1	0	0	0	17698	1377	48	3	525	3	ZFP2	5	178358837	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	19834744	178358837	2556423	24	4732											
FTSJD2	23070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	37446211	37446211	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gatgaagatcatcaagggctCcagtggcaccccaaagctca	10	12	3	2	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_015050	exon22	c.C2180T	p.S727F	AGGGCTCCAGTGG		118	39	0.33	159	0	0				78	22	0.28				T	37446211	C	T	37446211	3	4	68	1	0	0	0	0	1	0	0	0	6125	855	30	3	2262	3	FTSJD2	6	37446211	Missense_Mutation	SNP	C	TCGA-2G-AALP-01A-12D-A42Y-10		37446211	133668856	25	4733											
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	90486377	90486377	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgccattttcagtttgcttGtatgctcagaaagcattgct	8	9	2	1	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_014611	exon12	c.C1763G	p.T588R	TTGCTTGTATGCT		94	30	0.32	80	0	0				2	0	0				C	90486377	G	C	90486377	3	2	68	1	0	0	0	0	1	0	0	0	9464	1377	48	5	15391	5	MDN1	6	90486377	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	53040166	90486377	80628690	26	4734											
TIAM2	26230	mdanderson.org	37	chr6	155450817	155450817	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgcctccaccccaccgggcGaagaccgcaagagcccccga	10	19	0	2	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_012454	exon3	c.G460T	p.E154X	CCGGGCGAAGACC		42	3	0.07	73	0	0				0	0					T	155450817	G	T	155450817	4	4	68	1	0	0	0	0	0	1	0	0	15950	1059	37	1	462	1	TIAM2	6	155450817	Nonsense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	64964440	155450817	15664250	27	4735											
GRB10	2887	broad.mit.edu;bcgsc.ca	37	chr7	50680448	50680454	+	Frame_Shift_Del	DEL	CTGAACG	CTGAACG	-													tgtcacataccttgaggagtCtgaacgctgtcatccagcac					novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	CTGAACG	CTGAACG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	GRB10	NM_005311	exon10	c.1178_1184del	p.393_395del	AGGAGTCTGAACG		99	9	0.09	104	0	0		155		40	0	0				-	50680454	CTGAACG	-	50680448	7	5	68	1	0	1	0	1	0	0	0	0	6796	913	32	0	628	0	GRB10	7	50680448	Frame_Shift_Del	DEL	CTGAACG	TCGA-2G-AALP-01A-12D-A42Y-10		50680448	108458215	28	4736											
FGL2	10875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	76825646	76825646	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catcttagcctctttgaaggAggacttgtagccaccagggt	11	10	2	1	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_006682	exon2	c.T1270C	p.S424P	TGAAGGAGGACTT		115	32	0.28	108	0	0				17	0	0				G	76825646	A	G	76825646	3	3	68	1	0	0	0	0	1	0	0	0	5905	304	11	4	53	4	FGL2	7	76825646	Missense_Mutation	SNP	A	TCGA-2G-AALP-01A-12D-A42Y-10	26145198	76825646	82313017	29	4737											
PPP1R9A	55607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	94539755	94539755	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatttctggaaaaaacagaTggctcagttgttaagttgga	11	4	2	1	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_017650	exon2	c.T330C	p.D110D	AACAGATGGCTCA		207	100	0.48	219	0	0				1	1	1				C	94539755	T	C	94539755	2	2	68	1	0	0	0	0	0	0	0	1	12426	1461	51	4		4	PPP1R9A	7	94539755	Silent	SNP	T	TCGA-2G-AALP-01A-12D-A42Y-10	17714109	94539755	64598908	30	4738											
FEZF1	389549	broad.mit.edu;ucsc.edu	37	chr7	121944000	121944000	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcatgggccgtcacctcgGttcaggtagcacaaggcgcc	14	13	2	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	FEZF1	NM_001024613	exon1	c.C492A	p.N164K	ACCTCGGTTCAGG		86	12	0.14	74	1	0.0135135135		60		0	0					T	121944000	G	T	121944000	3	4	68	1	0	0	0	0	1	0	0	0	5857	1252	44	3	951	3	FEZF1	7	121944000	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	27404245	121944000	37194663	31	4739											
LRGUK	136332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr7	133812184	133812184	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctcctgagaggcttgggcAgatcccgaactggagcccga	13	13	1	2	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	LRGUK,NS,carcinoma,-1,1	LRGUK	NM_144648	exon1	c.A64T	p.R22X	TTGGGCAGATCCC		199	30	0.15	131	0	0		-1	1	2	0	0				T	133812184	A	T	133812184	4	4	68	1	0	0	0	0	0	1	0	0	8987	180	7	5	66	5	LRGUK	7	133812184	Nonsense_Mutation	SNP	A	TCGA-2G-AALP-01A-12D-A42Y-10	11868184	133812184	25326479	32	4740											
ZNF398	0	broad.mit.edu	37	chr7	148876752	148876752	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cacaatggaggctgtgggggTgatagtgacccatcaggtca	15	8	2	2	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	ZNF398	NM_170686	exon6	c.T1788G	p.G596G	TGGGGGTGATAGT		109	14	0.13	59	9	0.1525423729		54		88	1	0.01				G	148876752	T	G	148876752	2	3	68	1	0	0	0	0	0	0	0	1	17941	1683	59	4		4	ZNF398	7	148876752	Silent	SNP	T	TCGA-2G-AALP-01A-12D-A42Y-10	15064568	148876752	10261911	33	4741											
ZBTB10	65986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	81399795	81399795	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	cagaagctccaatgctccttCcagacctcctggctcaagga	8	15	1	2	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_023929	exon1	c.C750G	p.F250L	CTCCTTCCAGACC		89	20	0.22	81	0	0				10	2	0.2				G	81399795	C	G	81399795	3	3	68	1	0	0	0	0	1	0	0	0	17581	854	30	5	752	5	ZBTB10	8	81399795	Missense_Mutation	SNP	C	TCGA-2G-AALP-01A-12D-A42Y-10		81399795	64964227	34	4742											
ZNF706	51123	mdanderson.org	37	chr8	102213875	102213875	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atattaaggcagctttggcaGcagccttttggtcatgtcct	10	9	1	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001042510	exon3	c.C95T	p.A32V	TTGGCAGCAGCCT		78	4	0.05	84	0	0				203	0	0				A	102213875	G	A	102213875	3	1	68	1	0	0	0	0	1	0	0	0	18165	971	34	2	143	2	ZNF706	8	102213875	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	20814080	102213875	44150147	35	4743											
COL14A1	7373	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr8	121215961	121215961	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtaaggggtgaaaaacgcGgatgtgaatgagctgcagga	17	4	0	3	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_021110	exon9	c.G891T	p.A297A	AAACGCGGATGTG		68	4	0.06	70	0	0				0	0					T	121215961	G	T	121215961	2	4	68	1	0	0	0	0	0	0	0	1	3694	1103	39	1		1	COL14A1	8	121215961	Silent	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	19002086	121215961	25148061	36	4744											
C9orf3	84909	broad.mit.edu	37	chr9	97535328	97535328	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccataaacaacagggcccTttttccatgccaggagccac	7	15	0	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	C9orf3	NM_001193331	exon3	c.T842C	p.L281P	GGGCCCTTTTTCC		101	3	0.03	176	0	0		100		3	0	0				C	97535328	T	C	97535328	3	2	68	1	0	0	0	0	1	0	0	0	2495	1609	56	4	848	4	C9orf3	9	97535328	Missense_Mutation	SNP	T	TCGA-2G-AALP-01A-12D-A42Y-10		97535328	43678103	37	4745											
POMT1	10585	mdanderson.org	37	chr9	134382868	134382868	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agctccacttttctcattgtGccgccatgggagctgctctg	10	13	2	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001136113	exon5	c.G394A	p.A132T	CATTGTGCCGCCA		38	3	0.08	63	0	0				8	0	0				A	134382868	G	A	134382868	3	1	68	1	0	0	0	0	1	0	0	0	12292	1319	46	2	408	2	POMT1	9	134382868	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	36847540	134382868	6830563	38	4746											
SNAPC4	6621	hgsc.bcm.edu;mdanderson.org	37	chr9	139277986	139277986	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgcgcctgctctggctcGtcctcctcgctgctgctgct	11	18	1	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_003086	exon15	c.C1635A	p.D545E	TGGCTCGTCCTCC		60	4	0.07	81	0	0				25	0	0				T	139277986	G	T	139277986	3	4	68	1	0	0	0	0	1	0	0	0	14890	1136	40	1	2806	1	SNAPC4	9	139277986	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	4895118	139277986	1935445	39	4747											
ANAPC2	29882	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr9	140076172	140076172	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccgggacccagtcctctgGctcgcctgagtcatcctcac	10	17	3	1	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	ANAPC2	NM_013366	exon7	c.C1429T	p.P477S	CCTCTGGCTCGCC		23	12	0.52	42	1	0.0238095238		57		41	21	0.51				A	140076172	G	A	140076172	3	1	68	1	0	0	0	0	1	0	0	0	599	1203	42	2	1067	2	ANAPC2	9	140076172	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	798186	140076172	1137259	40	4748											
ACTA2	59	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	90697898	90697898	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gccagggtacatagtggtgcCccctgataggacattgttag	13	9	0	1	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001141945	exon8	c.G910C	p.G304R	TGGTGCCCCCTGA		145	51	0.35	232	0	0				55	8	0.15				G	90697898	C	G	90697898	3	3	68	1	0	0	0	0	1	0	0	0	192	623	22	5	231	5	ACTA2	10	90697898	Missense_Mutation	SNP	C	TCGA-2G-AALP-01A-12D-A42Y-10		90697898	44836849	41	4749											
CYP2C19	1557	hgsc.bcm.edu	37	chr10	96580387	96580387	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgctgaagcacccagaGgtcacaggtatgatcacaga	10	12	2	4	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	CYP2C19,NS,carcinoma,+1,2	CYP2C19	NM_000769	exon6	c.G954T	p.E318D	CCCAGAGGTCACA		45	3	0.07	73	0	0		1	2	0	0					T	96580387	G	T	96580387	3	4	68	1	0	0	0	0	1	0	0	0	4189	991	35	3	976	3	CYP2C19	10	96580387	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	5882489	96580387	38954360	42	4750											
TMEM180	79847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	104229774	104229774	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtttctcctctggaacagcCtcaatgaccccctcttcggt	7	15	4	1	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_024789	exon4	c.C193T	p.L65F	AACAGCCTCAATG		66	19	0.29	123	0	0				4	1	0.25				T	104229774	C	T	104229774	3	4	68	1	0	0	0	0	1	0	0	0	16158	681	24	3	199	3	TMEM180	10	104229774	Missense_Mutation	SNP	C	TCGA-2G-AALP-01A-12D-A42Y-10	7649387	104229774	31304973	43	4751											
PCGF6	84108	broad.mit.edu;mdanderson.org	37	chr10	105110539	105110539	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcatgtcctcctcctcctcCtcttcttcctcctccagctc	2	22	3	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	PCGF6	NM_001011663	exon1	c.G285A	p.E95E	CTCCTCCTCTTCT		29	3	0.1	53	0	0		23		12	0	0				T	105110539	C	T	105110539	2	4	68	1	0	0	0	0	0	0	0	1	11624	680	24	3		3	PCGF6	10	105110539	Silent	SNP	C	TCGA-2G-AALP-01A-12D-A42Y-10	880765	105110539	30424208	44	4752											
MUC5B	727897	broad.mit.edu	37	chr11	1268037	1268037	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gctcacactaccaaagtgccGactaccacaaccacgggctt	7	16	1	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	MUC5B	NM_002458	exon31	c.G9927A	p.P3309P	AGTGCCGACTACC		187	4	0.02	319	1	0.0031347962		473		0	0					A	1268037	G	A	1268037	2	1	68	1	0	0	0	0	0	0	0	1	10026	1045	37	1		1	MUC5B	11	1268037	Silent	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10		1268037	133738479	45	4753											
CARS	833	mdanderson.org	37	chr11	3060461	3060461	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catcctccaagagctgtgccGcttcaggcctcttctcccga	8	17	3	1	rs200598975	bycluster;by1000genomes;alternate_allele	TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001014437	exon6	c.C614A	p.A205E	TGTGCCGCTTCAG		43	3	0.07	92	0	0				30	0	0				T	3060461	G	T	3060461	3	4	68	1	0	0	0	0	1	0	0	0	2675	1087	38	1	1961	1	CARS	11	3060461	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	1792424	3060461	131946055	46	4754											
OR51L1	119682	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	5020846	5020846	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tcattgccacactaggtgtgGattcaatcttcatacttctt	6	10	5	0	rs199789707	bycluster;alternate_allele	TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	OR51L1	NM_001004755	exon1	c.G634T	p.D212Y	GGTGTGGATTCAA		120	50	0.42	213	1	0.0046948357		60		0	0					T	5020846	G	T	5020846	3	4	68	1	0	0	0	0	1	0	0	0	11149	1174	41	3	636	3	OR51L1	11	5020846	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	1960385	5020846	129985670	47	4755											
PC	5091	mdanderson.org	37	chr11	66616790	66616790	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctggccggcccggttcaggtCgctcacggccagggctttga	15	14	2	1	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_000920	exon21	c.G3199A	p.D1067N	TCAGGTCGCTCAC		46	3	0.07	75	0	0				24	0	0				T	66616790	C	T	66616790	3	4	68	1	0	0	0	0	1	0	0	0	11543	884	31	1	345	1	PC	11	66616790	Missense_Mutation	SNP	C	TCGA-2G-AALP-01A-12D-A42Y-10	61595944	66616790	68389726	48	4756											
TPCN2	219931	mdanderson.org	37	chr11	68830459	68830459	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgctgccggaaatggccagGtgggctcttggtgctctggg	17	10	2	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_139075	exon6	c.653+1G>T	.	GGCCAGGTGGGCT		42	3	0.07	87	0	0				3	0	0				T	68830459	G	T	68830459	5	4	68	1	0	0	0	0	0	0	1	0	16456	1275	44	3	676	3	TPCN2	11	68830459	Splice_Site	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	2213669	68830459	66176057	49	4757											
IGSF9B	22997	mdanderson.org	37	chr11	133807352	133807352	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gtaggcacctctgtcctcccGactgaccgatgtcactgtca	9	15	3	1	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_014987	exon5	c.C598A	p.R200R	CCTCCCGACTGAC		36	3	0.08	95	0	0				1	0	0				T	133807352	G	T	133807352	2	4	68	1	0	0	0	0	0	0	0	1	7649	1057	37	1		1	IGSF9B	11	133807352	Silent	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	64976893	133807352	1199164	50	4758											
PRMT8	56341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	3701426	3701426	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccctacacccactggaagCagaccgtcttctacttggaa	7	15	2	1	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	PRMT8_ENST00000452611,NS,carcinoma,-2,2	PRMT8_ENST00000452611	NM_019854	exon9	c.C1009A	p.Q337K	TGGAAGCAGACCG		110	17	0.15	57	0	0		-2	2	1	1	1				A	3701426	C	A	3701426	3	1	68	1	0	0	0	0	1	0	0	0	12593	711	25	2	1043	2	PRMT8	12	3701426	Missense_Mutation	SNP	C	TCGA-2G-AALP-01A-12D-A42Y-10		3701426	130150469	51	4759											
CALCOCO1	57658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	54108460	54108460	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agctctgtcagctcccgcttActttctgacaactgtacctg	7	14	3	1	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_020898	exon11	c.T1404C	p.S468S	CCGCTTACTTTCT		88	19	0.22	78	0	0				42	11	0.26				G	54108460	A	G	54108460	2	3	68	1	0	0	0	0	0	0	0	1	2595	388	14	4		4	CALCOCO1	12	54108460	Silent	SNP	A	TCGA-2G-AALP-01A-12D-A42Y-10	50407034	54108460	79743435	52	4760											
SARNP	84324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	56154395	56154395	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	acaatcccaaatcgctccttCctctttttcagtttctcatc	2	15	3	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_033082	exon10	c.G531A	p.R177R	CTCCTTCCTCTTT		166	38	0.23	133	0	0				863	223	0.26				T	56154395	C	T	56154395	2	4	68	1	0	0	0	0	0	0	0	1	13895	854	30	3		3	SARNP	12	56154395	Silent	SNP	C	TCGA-2G-AALP-01A-12D-A42Y-10	2045935	56154395	77697500	53	4761											
APAF1	317	broad.mit.edu	37	chr12	99052954	99052954	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaggttgtttcccagggggAgtgcattgggtttcagttgg	16	6	1	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	APAF1	NM_181868	exon5	c.A543G	p.G181G	AGGGGGAGTGCAT		149	4	0.03	162	0	0		111		0	0					G	99052954	A	G	99052954	2	3	68	1	0	0	0	0	0	0	0	1	751	291	11	4		4	APAF1	12	99052954	Silent	SNP	A	TCGA-2G-AALP-01A-12D-A42Y-10	42898559	99052954	34798941	54	4762											
POLR3B	55703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	106857290	106857290	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cagactcatatattgaaaaaGtgatgatatcttcaaatgct	6	6	3	4	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_018082	exon23	c.G2605C	p.V869L	GAAAAAGTGATGA		218	47	0.22	191	0	0				17	3	0.18				C	106857290	G	C	106857290	3	2	68	1	0	0	0	0	1	0	0	0	12276	1029	36	5	2695	5	POLR3B	12	106857290	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	7804336	106857290	26994605	55	4763											
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	117657988	117657988	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagccatggtgacgtccccAcagacgtatatgtggccccc	11	15	0	2	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001204218	exon28	c.T4164C	p.C1388C	GTCCCCACAGACG		64	19	0.3	60	0	0				0	0					G	117657988	A	G	117657988	2	3	68	1	0	0	0	0	0	0	0	1	10587	157	6	4		4	NOS1	12	117657988	Silent	SNP	A	TCGA-2G-AALP-01A-12D-A42Y-10	10800698	117657988	16193907	56	4764											
RPLP0	6175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	120637146	120637146	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ggttgttttccaggtgccctCggatggccttgcgcatcatg	13	11	1	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_053275	exon3	c.G197C	p.R66P	TGCCCTCGGATGG		134	27	0.2	98	0	0				5417	859	0.16				G	120637146	C	G	120637146	3	3	68	1	0	0	0	0	1	0	0	0	13655	884	31	5	780	5	RPLP0	12	120637146	Missense_Mutation	SNP	C	TCGA-2G-AALP-01A-12D-A42Y-10	2979158	120637146	13214749	57	4765											
SPTB	6710	hgsc.bcm.edu	37	chr14	65242042	65242042	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcctggcagtcgatctccGccgcctccaccagctgctgc	11	18	1	0	rs377634587		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	SPTB_ENST00000542895,colon,carcinoma,+1,3	SPTB_ENST00000542895	NM_001024858	exon22	c.C4643T	p.A1548V	ATCTCCGCCGCCT		97	4	0.04	82	0	0		1	3	3	0	0				A	65242042	G	A	65242042	3	1	68	1	0	0	0	0	1	0	0	0	15173	1087	38	1	2468	1	SPTB	14	65242042	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10		65242042	42107498	58	4766											
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	68282599	68282599	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcctgtgccagctcccattCtcccctccgcaggcattcgc	8	19	1	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_015346	exon2	c.G82A	p.E28K	CCCATTCTCCCCT		127	40	0.31	101	0	0				0	0					T	68282599	C	T	68282599	3	4	68	1	0	0	0	0	1	0	0	0	17725	922	32	3	7701	3	ZFYVE26	14	68282599	Missense_Mutation	SNP	C	TCGA-2G-AALP-01A-12D-A42Y-10	3040557	68282599	39066941	59	4767											
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	42143126	42143126	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaaacaggatctctgccCcactggtcagcctggcaccc	9	17	2	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_016642	exon66	c.G10742A	p.G3581E	TCTGCCCCACTGG		101	38	0.38	158	0	0				3	0	0				T	42143126	C	T	42143126	3	4	68	1	0	0	0	0	1	0	0	0	15177	623	22	3	189	3	SPTBN5	15	42143126	Missense_Mutation	SNP	C	TCGA-2G-AALP-01A-12D-A42Y-10		42143126	60388266	60	4768											
STRA6	64220	broad.mit.edu	37	chr15	74476251	74476252	+	Frame_Shift_Ins	INS	-	-	T													ctcatccaacagaatatggcINSttggcgggagggatggggac					novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	STRA6	NM_001199042	exon14	c.1363_1364insA	p.A455fs	ATATGGCTTGGCG		66	10	0.15	94	0	0		66		29	0	0				T	74476252	-	T	74476251	7	5	68	1	0	1	1	0	0	0	0	0	15377	797	28	0	781	0	STRA6	15	74476251	Frame_Shift_Ins	INS	-	TCGA-2G-AALP-01A-12D-A42Y-10	32333125	74476251	28055141	61	4769											
STRA6	64220	mdanderson.org	37	chr15	74477381	74477381	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaagcaggacaagaccaagGctgagatgtagcacactggt	13	8	0	2	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001199042	exon13	c.C1223A	p.A408D	ACCAAGGCTGAGA		53	3	0.06	73	0	0				40	0	0				T	74477381	G	T	74477381	3	4	68	1	0	0	0	0	1	0	0	0	15377	1203	42	2	925	2	STRA6	15	74477381	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	1130	74477381	28054011	62	4770											
CSK	1445	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	75094846	75094846	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acatcaaaacccacgagctgCacctgtgacggctggcctcc	9	16	1	1	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	CSK	NM_001127190	exon14	c.C1345T	p.H449Y	GAGCTGCACCTGT		55	22	0.4	87	1	0.0114942529		43		233	99	0.42				T	75094846	C	T	75094846	3	4	68	1	0	0	0	0	1	0	0	0	3968	710	25	2	1391	2	CSK	15	75094846	Missense_Mutation	SNP	C	TCGA-2G-AALP-01A-12D-A42Y-10	617465	75094846	27436546	63	4771											
MAPK8IP3	23162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	1818243	1818243	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggagggcgcccgtcccggGggcatcatccacgtgtatgg	18	12	1	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	MAPK8IP3_ENST00000250894,colon,carcinoma,+2,2	MAPK8IP3_ENST00000250894	NM_015133	exon30	c.G3603A	p.G1201G	TCCCGGGGGCATC		53	6	0.11	43	0	0		2	2	49	12	0.24				A	1818243	G	A	1818243	2	1	68	1	0	0	0	0	0	0	0	1	9335	1219	43	3		3	MAPK8IP3	16	1818243	Silent	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10		1818243	88536510	64	4772											
NLRC3	197358	mdanderson.org	37	chr16	3614976	3614976	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctttcacctgctcggctGgggagcccgtaccgtggccc	15	15	1	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_178844	exon4	c.C62A	p.P21Q	TCGGCTGGGGAGC		48	4	0.08	61	0	0				0	0					T	3614976	G	T	3614976	3	4	68	1	0	0	0	0	1	0	0	0	10514	1348	47	3	3204	3	NLRC3	16	3614976	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	1796733	3614976	86739777	65	4773											
NUP93	9688	mdanderson.org	37	chr16	56855496	56855496	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtgcttccgtcgcagagctCgatgataaggtagcacctag	12	10	0	2	rs2118017	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_014669	exon7	c.C645T	p.L215L	AGAGCTCGATGAT		107	3	0.03	115	0	0				116	0	0				T	56855496	C	T	56855496	2	4	68	1	0	0	0	0	0	0	0	1	10819	871	31	1		1	NUP93	16	56855496	Silent	SNP	C	TCGA-2G-AALP-01A-12D-A42Y-10	53240520	56855496	33499257	66	4774											
WRAP53	55135	mdanderson.org	37	chr17	7606661	7606661	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaggagctgggccttcccTtgctctccacgcgccacgtc	12	16	1	1	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001143991	exon11	c.T1504C	p.L502L	CTTCCCTTGCTCT		58	3	0.05	43	0	0				239	1	0				C	7606661	T	C	7606661	2	2	68	1	0	0	0	0	0	0	0	1	17459	1606	56	4		4	WRAP53	17	7606661	Silent	SNP	T	TCGA-2G-AALP-01A-12D-A42Y-10		7606661	73588549	67	4775											
KRT38	8687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	39594811	39594811	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcagctccaggatctccgActggcagcactgcagctcct	9	16	2	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	KRT38,mouth,carcinoma,+1,1	KRT38	NM_006771	exon5	c.T952C	p.S318P	TCTCCGACTGGCA		124	34	0.27	138	0	0		1	1	0	0					G	39594811	A	G	39594811	3	3	68	1	0	0	0	0	1	0	0	0	8517	275	10	4	430	4	KRT38	17	39594811	Missense_Mutation	SNP	A	TCGA-2G-AALP-01A-12D-A42Y-10	31988150	39594811	41600399	68	4776											
KRT9	3857	broad.mit.edu	37	chr17	39723690	39723690	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcctccaccatagccaccCccacttcctcctccagagcc	3	23	0	1	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	KRT9,NS,carcinoma,0,1	KRT9	NM_000226	exon7	c.G1707A	p.G569G	GCCACCCCCACTT		274	6	0.02	320	1	0.003125		78	1	0	0					T	39723690	C	T	39723690	2	4	68	1	0	0	0	0	0	0	0	1	8543	610	22	3		3	KRT9	17	39723690	Silent	SNP	C	TCGA-2G-AALP-01A-12D-A42Y-10	128879	39723690	41471520	69	4777											
JUP	3728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	39912437	39912437	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acacacttaccatctccataGggctcattgatgggaatcat	7	11	3	1	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_021991	exon13	c.C2076T	p.P692P	TCCATAGGGCTCA		93	31	0.33	105	0	0				260	52	0.2				A	39912437	G	A	39912437	2	1	68	1	0	0	0	0	0	0	0	1	8015	987	35	3		3	JUP	17	39912437	Silent	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	188747	39912437	41282773	70	4778											
TGIF1	7050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr18	3452011	3452011	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagccgggtgtctgccgggGtgggctccccgcattgttcg	17	12	1	1	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_170695	exon1	c.G34A	p.V12M	GCCGGGGTGGGCT		79	39	0.49	113	0	0				4	3	0.75				A	3452011	G	A	3452011	3	1	68	1	0	0	0	0	1	0	0	0	15884	1261	44	3	118	3	TGIF1	18	3452011	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10		3452011	74625237	71	4779											
ADNP2	22850	mdanderson.org	37	chr18	77875467	77875467	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcttgacaacatcagaaaGgtgcgaaaaaaggtgaaagg	11	5	2	3	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_014913	exon2	c.G42T	p.K14N	CAGAAAGGTGCGA		50	3	0.06	77	0	0				2	0	0				T	77875467	G	T	77875467	3	4	68	1	0	0	0	0	1	0	0	0	323	991	35	3	44	3	ADNP2	18	77875467	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	74423456	77875467	201781	72	4780											
FSD1	79187	mdanderson.org	37	chr19	4307981	4307981	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcgaggactttcctcagGtgggtgcctctgatgctgcc	13	12	2	1	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_024333	exon4	c.345+1G>T	.	CCTCAGGTGGGTG		43	3	0.07	63	0	0				1	0	0				T	4307981	G	T	4307981	5	4	68	1	0	0	0	0	0	0	1	0	6104	1275	44	3	360	3	FSD1	19	4307981	Splice_Site	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10		4307981	54821002	73	4781											
TIMM44	10469	broad.mit.edu	37	chr19	7997577	7997577	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggtccttgtcaaaggccgGgtccacccggaggatctccg	13	15	2	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	TIMM44	NM_006351	exon9	c.C922A	p.P308T	AGGCCGGGTCCAC		146	5	0.03	212	0	0		47		273	0	0				T	7997577	G	T	7997577	3	4	68	1	0	0	0	0	1	0	0	0	15971	1232	43	3	456	3	TIMM44	19	7997577	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	3689596	7997577	51131406	74	4782											
SIN3B	23309	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	16973303	16973303	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaagcgcataggatccaGctaccgggcactccccaaaa	9	15	0	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	SIN3B	NM_015260	exon9	c.G1199T	p.S400I	GATCCAGCTACCG		43	4	0.09	73	0	0		90		14	0	0				T	16973303	G	T	16973303	3	4	68	1	0	0	0	0	1	0	0	0	14380	971	34	2	1233	2	SIN3B	19	16973303	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	8975726	16973303	42155680	75	4783											
MYO9B	4650	mdanderson.org	37	chr19	17323115	17323115	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcctcgggccagaccaatgGctgagagccacagctgacaa	12	14	0	3	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_004145	exon40	c.G6470T	p.G2157V	CCAATGGCTGAGA		15	2	0.13	17	0	0				71	0	0				T	17323115	G	T	17323115	3	4	68	1	0	0	0	0	1	0	0	0	10132	1203	42	2	6635	2	MYO9B	19	17323115	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	349812	17323115	41805868	76	4784											
CRTC1	23373	mdanderson.org	37	chr19	18888142	18888142	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcaacgaccccgacatgGttctggccgacccagccacc	9	18	2	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001098482	exon15	c.G1903T	p.V635F	GACATGGTTCTGG		24	3	0.13	27	0	0				45	0	0				T	18888142	G	T	18888142	3	4	68	1	0	0	0	0	1	0	0	0	3922	1261	44	3	1961	3	CRTC1	19	18888142	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	1565027	18888142	40240841	77	4785											
SIGLEC11	114132	mdanderson.org	37	chr19	50453375	50453375	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcccagagcctcaggcccTggaagctgagggaggcatag	15	12	1	2	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_052884	exon11	c.A1949G	p.Q650R	AGGCCCTGGAAGC		55	3	0.05	87	0	0				4	0	0				C	50453375	T	C	50453375	3	2	68	1	0	0	0	0	1	0	0	0	14361	1580	55	4	151	4	SIGLEC11	19	50453375	Missense_Mutation	SNP	T	TCGA-2G-AALP-01A-12D-A42Y-10	31565233	50453375	8675608	78	4786											
PAX1	5075	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr20	21689976	21689976	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctcgccccgggcccgccGtggccgcctgcgcaaggtcc	13	20	0	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_006192	exon4	c.G1176T	p.P392P	CCCGCCGTGGCCG		14	7	0.5	16	0	0				0	0					T	21689976	G	T	21689976	2	4	68	1	0	0	0	0	0	0	0	1	11524	1132	40	1		1	PAX1	20	21689976	Silent	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10		21689976	41335544	79	4787											
CD93	22918	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr20	23066500	23066500	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acccagctgaagcccttcagCggcagactagggtccaggca	12	14	1	2	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_012072	exon1	c.G330T	p.P110P	CTTCAGCGGCAGA		58	29	0.5	99	0	0				0	0					A	23066500	C	A	23066500	2	1	68	1	0	0	0	0	0	0	0	1	3069	755	27	1		1	CD93	20	23066500	Silent	SNP	C	TCGA-2G-AALP-01A-12D-A42Y-10	1376524	23066500	39959020	80	4788											
PIGU	128869	mdanderson.org	37	chr20	33203925	33203925	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgctaaggcaagaaaaataGcactgaggaaagcactgcct	10	9	0	2	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_080476	exon7	c.C548A	p.A183D	AAAATAGCACTGA		47	3	0.06	60	0	0				65	0	0				T	33203925	G	T	33203925	3	4	68	1	0	0	0	0	1	0	0	0	11947	971	34	2	783	2	PIGU	20	33203925	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	10137425	33203925	29821595	81	4789											
LCA5L	150082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	40792705	40792705	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgagctgctaaagtcttcCgagtctcaatagccagctgc	9	12	3	1	rs370952139		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_152505	exon6	c.G902A	p.R301Q	GTCTTCCGAGTCT		142	28	0.2	129	0	0				0	0					T	40792705	C	T	40792705	3	4	68	1	0	0	0	0	1	0	0	0	8695	652	23	1	1130	1	LCA5L	21	40792705	Missense_Mutation	SNP	C	TCGA-2G-AALP-01A-12D-A42Y-10		40792705	7337190	82	4790											
MGAT3	4248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	39884487	39884487	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtgtatgggctggacggcAtccgcctgcgccgccgccag	15	15	0	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_002409	exon2	c.A1135T	p.I379F	GACGGCATCCGCC		39	15	0.38	65	0	0				4	0	0				T	39884487	A	T	39884487	3	4	68	1	0	0	0	0	1	0	0	0	9593	217	8	5	1137	5	MGAT3	22	39884487	Missense_Mutation	SNP	A	TCGA-2G-AALP-01A-12D-A42Y-10		39884487	11420079	83	4791											
FANCB	2187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	14868779	14868779	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcttcttcaccacaaagAggaacaagacattccttcta	4	11	4	2	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_152633	exon6	c.T1344C	p.P448P	ACAAAGAGGAACA		233	79	0.34	140	0	0				5	1	0.2				G	14868779	A	G	14868779	2	3	68	1	0	0	0	0	0	0	0	1	5695	291	11	4		4	FANCB	23	14868779	Silent	SNP	A	TCGA-2G-AALP-01A-12D-A42Y-10		14868779	140401781	84	4792											
PORCN	64840	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	48372918	48372918	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcttctgcccccagggaccTgacggtgtccaagccactga	10	16	2	2	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	PORCN	NM_203475	exon9	c.T851G	p.L284R	GGGACCTGACGGT		219	55	0.25	114	1	0.0087719298		61		25	6	0.24				G	48372918	T	G	48372918	3	3	68	1	0	0	0	0	1	0	0	0	12305	1580	55	4	885	4	PORCN	23	48372918	Missense_Mutation	SNP	T	TCGA-2G-AALP-01A-12D-A42Y-10	33504139	48372918	106897642	85	4793											
PRICKLE3	4007	hgsc.bcm.edu	37	chrX	49033372	49033372	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccggcactccagctgcggcGgctcggccctggagctgtgg	17	15	0	0	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_006150	exon8	c.C1135A	p.R379S	TGCGGCGGCTCGG		99	4	0.04	66	0	0				16	0	0				T	49033372	G	T	49033372	3	4	68	1	0	0	0	0	1	0	0	0	12539	1116	39	1	720	1	PRICKLE3	23	49033372	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	660454	49033372	106237188	86	4794											
FATE1	89885	broad.mit.edu	37	chrX	150891213	150891213	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagcattgccaacctgtgGctgtggatgaaccagtgatc	12	11	0	2	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	FATE1	NM_033085	exon5	c.G534T	p.W178C	CCTGTGGCTGTGG		212	9	0.04	167	2	0.0119760479		30		4	0	0				T	150891213	G	T	150891213	3	4	68	1	0	0	0	0	1	0	0	0	5725	1212	42	2	552	2	FATE1	23	150891213	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	101857841	150891213	4379347	87	4795											
IL9R	3581	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chrX	155239821	155239821	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcagcagcagcaGcaacaacaacaactactgtg	9	13	0	0	rs140822242	bycluster;byfrequency	TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_002186	exon9	c.G1313A	p.S438N	GCAGCAGCAACAA		161	8	0.05	300	0	0	0.01			2	0	0				A	155239821	G	A	155239821	3	1	68	1	0	0	0	0	1	0	0	0	7751	971	34	2	1347	2	IL9R	23	155239821	Missense_Mutation	SNP	G	TCGA-2G-AALP-01A-12D-A42Y-10	4348608	155239821	30739	88	4796											
PRAMEF2	65122	hgsc.bcm.edu	37	chr1	12921136	12921136	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaacctattagaagaggaCttgaagtgtctctcccagtt	10	9	1	3	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	PRAMEF2,pharynx,carcinoma,0,1	PRAMEF2	NM_023014	exon4	c.C927T	p.D309D	AGAGGACTTGAAG		104	6	0.06	66	0	0		0	1	0	0					T	12921136	C	T	12921136	2	4	69	1	0	0	0	0	0	0	0	1	12483	564	20	3		3	PRAMEF2	1	12921136	Silent	SNP	C	TCGA-2G-AALQ-01A-12D-A42Y-10		12921136	236329485	1	4797											
PDPN	10630	broad.mit.edu	37	chr1	13910397	13910397	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctccctctccggggctcctGctcccacccctccggccccc	7	26	1	0	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	PDPN	NM_006474	exon1	c.G97A	p.A33T	GCTCCTGCTCCCA		146	6	0.04	125	0	0		44		63	0	0				A	13910397	G	A	13910397	3	1	69	1	0	0	0	0	1	0	0	0	11734	1319	46	2	99	2	PDPN	1	13910397	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	989261	13910397	235340224	2	4798											
CSF3R	1441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	36937224	36937224	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acataaccttggatccgtccGctgtcttcctccaggggcac	9	15	1	0	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_156039	exon10	c.C1095T	p.S365S	CCGTCCGCTGTCT		110	6	0.05	114	0	0				7	0	0				A	36937224	G	A	36937224	2	1	69	1	0	0	0	0	0	0	0	1	3962	1078	38	1		1	CSF3R	1	36937224	Silent	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	23026827	36937224	212313397	3	4799											
SEC22B	9554	broad.mit.edu	37	chr1	145109975	145109976	+	RNA	INS	-	-	C													cacatgtgacaggaactttgINSctaaagatctacttgattgg					rs11458983	bycluster	TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	.	.	.	.	AACTTTGCTAAAG		12	4	0.33	6	0	0				1	0	0				C	145109976	-	C	145109975	6	5	69	0	1	1	1	0	0	0	0	0	14042	1334	46	0		0	SEC22B	1	145109975	RNA	INS	-	TCGA-2G-AALQ-01A-12D-A42Y-10	108172751	145109975	104140646	4	4800											
KPRP	448834	broad.mit.edu	37	chr1	152733728	152733728	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatgtgtttccagagcggaGgggtcaggatggccatggag	18	6	1	2	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	KPRP	NM_001025231	exon2	c.G1664A	p.R555K	AGCGGAGGGGTCA		139	5	0.04	121	0	0		152		0	0					A	152733728	G	A	152733728	3	1	69	1	0	0	0	0	1	0	0	0	8478	1000	35	3	1666	3	KPRP	1	152733728	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	7623753	152733728	96516893	5	4801											
CD1E	913	hgsc.bcm.edu;mdanderson.org	37	chr1	158325337	158325337	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggggctcatggaagcaggGgagtcagaactgaaacggaa	17	7	2	2	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001042584	exon3	c.G603T	p.G201G	AGCAGGGGAGTCA		86	4	0.05	56	0	0				2	0	0				T	158325337	G	T	158325337	2	4	69	1	0	0	0	0	0	0	0	1	3000	1219	43	3		3	CD1E	1	158325337	Silent	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	5591609	158325337	90925284	6	4802											
RIF1	55183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	152321277	152321277	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaggaaaagtcactcattgGgttaaagaatacagaaaata	8	5	3	2	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_018151	exon30	c.G5243C	p.G1748A	TCATTGGGTTAAA		143	43	0.3	107	0	0				7	4	0.57				C	152321277	G	C	152321277	3	2	69	1	0	0	0	0	1	0	0	0	13408	1232	43	5	5357	5	RIF1	2	152321277	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10		152321277	90878096	7	4803											
ZDBF2	57683	mdanderson.org	37	chr2	207162013	207162013	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gagtttgaccagacagagtaGacgtcaaatatgtaccagta	10	7	1	4	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_020923	exon4	c.G104T	p.R35I	AGAGTAGACGTCA		112	5	0.04	75	0	0				3	0	0				T	207162013	G	T	207162013	3	4	69	1	0	0	0	0	1	0	0	0	17656	942	33	3	110	3	ZDBF2	2	207162013	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	54840736	207162013	36037360	8	4804											
IRS1	3667	broad.mit.edu;mdanderson.org	37	chr2	227662443	227662443	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgtccaccgaggctgggcGggacatggtgccttcgccgt	16	14	0	0	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	IRS1	NM_005544	exon1	c.C1012T	p.R338C	CTGGGCGGGACAT		10	4	0.4	17	0	0		141		16	7	0.44				A	227662443	G	A	227662443	3	1	69	1	0	0	0	0	1	0	0	0	7883	1116	39	1	2720	1	IRS1	2	227662443	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	20500430	227662443	15536930	9	4805											
USP4	7375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	49318243	49318243	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcgtacacataaggccttgCtgacaggttacagacaaact	9	10	0	2	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_003363	exon20	c.G2578C	p.A860P	GCCTTGCTGACAG		79	25	0.32	84	0	0				85	34	0.4				G	49318243	C	G	49318243	3	3	69	1	0	0	0	0	1	0	0	0	17130	797	28	5	325	5	USP4	3	49318243	Missense_Mutation	SNP	C	TCGA-2G-AALQ-01A-12D-A42Y-10		49318243	148704187	10	4806											
MUC4	4585	broad.mit.edu	37	chr3	195512457	195512457	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggtgaccggaagaggggtGgcatgacctgtggacactga	17	8	0	4	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	MUC4	NM_018406	exon2	c.C5994T	p.A1998A	AGGGGTGGCATGA		105	5	0.05	96	1	0.0104166667		1505		0	0					A	195512457	G	A	195512457	2	1	69	1	0	0	0	0	0	0	0	1	10025	1335	47	3		3	MUC4	3	195512457	Silent	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	146194214	195512457	2509973	11	4807											
BRD9	65980	mdanderson.org	37	chr5	865672	865672	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agttcaaatggctgtcgtcaGggtccagctccttcttcacc	9	13	4	0	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_023924	exon15	c.C1550A	p.P517H	TCGTCAGGGTCCA		21	2	0.1	19	0	0				57	0	0				T	865672	G	T	865672	3	4	69	1	0	0	0	0	1	0	0	0	1509	1000	35	3	251	3	BRD9	5	865672	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10		865672	180049588	12	4808											
IRX2	153572	mdanderson.org	37	chr5	2751510	2751510	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgggcgcctggtacaggtaGccctgcgggtaggacatggt	17	11	0	0	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001134222	exon1	c.C18A	p.G6G	CAGGTAGCCCTGC		12	2	0.17	8	0	0				0	0					T	2751510	G	T	2751510	2	4	69	1	0	0	0	0	0	0	0	1	7887	958	34	2		2	IRX2	5	2751510	Silent	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	1885838	2751510	178163750	13	4809											
IRX1	79192	broad.mit.edu;mdanderson.org	37	chr5	3600194	3600194	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccaactggaccaacagcGcattcctcgcacagggctcc	8	17	1	0	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	IRX1,rectum,carcinoma,0,1	IRX1	NM_024337	exon2	c.G1132A	p.A378T	AACAGCGCATTCC		133	5	0.04	198	0	0		106	1	22	0	0				A	3600194	G	A	3600194	3	1	69	1	0	0	0	0	1	0	0	0	7886	1087	38	1	1138	1	IRX1	5	3600194	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	848684	3600194	177315066	14	4810											
ERAP1	51752	hgsc.bcm.edu;bcgsc.ca	37	chr5	96119761	96119761	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acagggataaatccaaggccTtttcaatggacagcttccca	8	11	1	0	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001198541	exon14	c.A1967G	p.K656R	AAGGCCTTTTCAA		83	4	0.05	107	0	0				16	0	0				C	96119761	T	C	96119761	3	2	69	1	0	0	0	0	1	0	0	0	5231	1609	56	4	915	4	ERAP1	5	96119761	Missense_Mutation	SNP	T	TCGA-2G-AALQ-01A-12D-A42Y-10	92519567	96119761	84795499	15	4811											
ALDH5A1	7915	ucsc.edu;bcgsc.ca	37	chr6	24520647	24520647	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agatcctgttgcaccacgcaGcaaactctgtgaaaagggtc	10	11	1	2	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	ALDH5A1	NM_170740	exon7	c.G928A	p.A310T	CACGCAGCAAACT		41	4	0.1	57	0	0		42		19	0	0				A	24520647	G	A	24520647	3	1	69	1	0	0	0	0	1	0	0	0	499	971	34	2	954	2	ALDH5A1	6	24520647	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10		24520647	146594420	16	4812											
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	65596686	65596686	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gattttacatttatttacatCaagttcacagaagggcccat	6	8	2	1	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001142800	exon19	c.G2896C	p.D966H	TTACATCAAGTTC		85	34	0.4	122	0	0				0	0					G	65596686	C	G	65596686	3	3	69	1	0	0	0	0	1	0	0	0	5360	826	29	5	6483	5	EYS	6	65596686	Missense_Mutation	SNP	C	TCGA-2G-AALQ-01A-12D-A42Y-10	41076039	65596686	105518381	17	4813											
ZNF292	23036	mdanderson.org	37	chr6	87966328	87966328	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagagaaaagaacaagattGctttaatgatgcccatgtta	10	5	0	4	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_015021	exon8	c.G2981T	p.C994F	AAGATTGCTTTAA		50	3	0.06	50	0	0				3	0	0				T	87966328	G	T	87966328	3	4	69	1	0	0	0	0	1	0	0	0	17882	1319	46	2	3011	2	ZNF292	6	87966328	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	22369642	87966328	83148739	18	4814											
SAMD5	389432	mdanderson.org	37	chr6	147830332	147830332	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgggccgcccgccgacgccGtccccaccggccgccggggg	16	22	0	0	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001030060	exon1	c.G268T	p.V90F	GACGCCGTCCCCA		12	2	0.17	14	0	0				0	0					T	147830332	G	T	147830332	3	4	69	1	0	0	0	0	1	0	0	0	13874	1145	40	1	270	1	SAMD5	6	147830332	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	59864004	147830332	23284735	19	4815											
LMTK2	22853	mdanderson.org	37	chr7	97823823	97823823	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgacccactgcccgaggactGgaagaaggaaaagaaggcag	14	10	0	2	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_014916	exon11	c.G4046T	p.W1349L	AGGACTGGAAGAA		34	3	0.09	31	0	0				10	0	0				T	97823823	G	T	97823823	3	4	69	1	0	0	0	0	1	0	0	0	8899	1357	47	3	4088	3	LMTK2	7	97823823	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10		97823823	61314840	20	4816											
TMEM209	84928	broad.mit.edu	37	chr7	129843940	129843940	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaagcactagggtgtgccTccccctgcatctatgaaaaa	11	11	1	1	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	TMEM209	NM_032842	exon2	c.A14G	p.E5G	TGTGCCTCCCCCT		61	3	0.05	54	1	0.0185185185		31		4	0	0				C	129843940	T	C	129843940	3	2	69	1	0	0	0	0	1	0	0	0	16193	1551	54	4	1727	4	TMEM209	7	129843940	Missense_Mutation	SNP	T	TCGA-2G-AALQ-01A-12D-A42Y-10	32020117	129843940	29294723	21	4817											
RIMS2	9699	broad.mit.edu;mdanderson.org	37	chr8	105261745	105261745	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtaggaatgatggacaaaaAgggacagctggaggtagaaa	16	3	0	2	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	RIMS2	NM_001100117	exon22	c.A3620G	p.K1207R	ACAAAAAGGGACA		94	4	0.04	85	0	0		1357		0	0					G	105261745	A	G	105261745	3	3	69	1	0	0	0	0	1	0	0	0	13419	72	3	4	3902	4	RIMS2	8	105261745	Missense_Mutation	SNP	A	TCGA-2G-AALQ-01A-12D-A42Y-10		105261745	41102277	22	4818											
PTK2	5747	mdanderson.org	37	chr8	141684497	141684497	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggtttctttggtggagctGcaggatctggtgagagagaa	17	5	2	2	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_005607	exon29	c.C2675T	p.A892V	GGAGCTGCAGGAT		45	3	0.07	68	0	0				131	0	0				A	141684497	G	A	141684497	3	1	69	1	0	0	0	0	1	0	0	0	12811	1319	46	2	565	2	PTK2	8	141684497	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	36422752	141684497	4679525	23	4819											
PLEC	5339	mdanderson.org	37	chr8	144993851	144993851	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcagccgttgtggctctcaGcaggccccggcgcatggcct	14	16	1	0	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_201380	exon32	c.C10549A	p.L3517M	CTCTCAGCAGGCC		21	2	0.1	30	0	0				41	0	0				T	144993851	G	T	144993851	3	4	69	1	0	0	0	0	1	0	0	0	12099	962	34	2	3509	2	PLEC	8	144993851	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	3309354	144993851	1370171	24	4820											
RECQL4	9401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr8	145741150	145741150	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagggcagatgtctcacctGgccggggacactgggctgcc	15	14	1	1	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_004260	exon6	c.C1256T	p.P419L	TCACCTGGCCGGG		97	32	0.33	74	0	0				40	7	0.18				A	145741150	G	A	145741150	3	1	69	1	0	0	0	0	1	0	0	0	13253	1348	47	3	2435	3	RECQL4	8	145741150	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	747299	145741150	622872	25	4821											
COL5A1	1289	broad.mit.edu	37	chr9	137676839	137676839	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttttctggcttgcagggggAgatcggcccacccggtccca	13	14	1	1	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	COL5A1	NM_000093	exon30	c.A2489G	p.E830G	AGGGGGAGATCGG		190	4	0.02	233	2	0.008583691		323		191	0	0				G	137676839	A	G	137676839	3	3	69	1	0	0	0	0	1	0	0	0	3719	304	11	4	2607	4	COL5A1	9	137676839	Missense_Mutation	SNP	A	TCGA-2G-AALQ-01A-12D-A42Y-10		137676839	3536592	26	4822											
PI4K2A	55361	hgsc.bcm.edu	37	chr10	99410611	99410729	+	Frame_Shift_Del	DEL	ATTTCTTTCCAGATTCCTGCTGACTTGGTCTGTGGGCTATTTTGGTCAACTCGGATTTAACATCCTCTTTTTCTTTGGTCTCTGTAGAGGATCATTGCTGTCTTCAAACCCAAGAATGA	ATTTCTTTCCAGATTCCTGCTGACTTGGTCTGTGGGCTATTTTGGTCAACTCGGATTTAACATCCTCTTTTTCTTTGGTCTCTGTAGAGGATCATTGCTGTCTTCAAACCCAAGAATGA	-													ttgtctgcctatgccctgtcAtttctttccagattcctgct					novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	ATTTCTTTCCAGATTCCTGCTGACTTGGTCTGTGGGCTATTTTGGTCAACTCGGATTTAACATCCTCTTTTTCTTTGGTCTCTGTAGAGGATCATTGCTGTCTTCAAACCCAAGAATGA	ATTTCTTTCCAGATTCCTGCTGACTTGGTCTGTGGGCTATTTTGGTCAACTCGGATTTAACATCCTCTTTTTCTTTGGTCTCTGTAGAGGATCATTGCTGTCTTCAAACCCAAGAATGA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_018425	exon2	c.436_466del	p.146_156del	CCTGTCATTTCTT		21	0	0	39	0	0				0	0					-	99410729	ATTTCTTTCCAGATTCCTGCTGACTTGGTCTGTGGGCTATTTTGGTCAACTCGGATTTAACATCCTCTTTTTCTTTGGTCTCTGTAGAGGATCATTGCTGTCTTCAAACCCAAGAATGA	-	99410611	7	5	69	1	0	1	0	1	0	0	0	0	11918	232	8	0		0	PI4K2A	10	99410611	Frame_Shift_Del	DEL	ATTTCTTTCCAGATTCCTGCTGACTTGGTCTGTGGGCTATTTTGGTCAACTCGGATTTAACATCCTCTTTTTCTTTGGTCTCTGTAGAGGATCATTGCTGTCTTCAAACCCAAGAATGA	TCGA-2G-AALQ-01A-12D-A42Y-10		99410611	36124136	27	4823											
SH3PXD2A	9644	mdanderson.org	37	chr10	105361836	105361836	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tatgctgttgcgctgggcggGcagtaggggtgagtctgaac	18	7	1	2	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_014631	exon14	c.C3055T	p.P1019S	GGGCGGGCAGTAG		43	3	0.07	55	0	0				20	0	0				A	105361836	G	A	105361836	3	1	69	1	0	0	0	0	1	0	0	0	14310	1203	42	2	266	2	SH3PXD2A	10	105361836	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	5951225	105361836	30172911	28	4824											
EMX2	2018	mdanderson.org	37	chr10	119307662	119307662	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gattcgcaacaaaagaaaaaAgggacgcaccatattaaccg	8	9	0	1	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001165924	exon2	c.A493G	p.R165G	GAAAAAAGGGACG		44	3	0.07	49	0	0				19	0	0				G	119307662	A	G	119307662	3	3	69	1	0	0	0	0	1	0	0	0	5136	72	3	4	688	4	EMX2	10	119307662	Missense_Mutation	SNP	A	TCGA-2G-AALQ-01A-12D-A42Y-10	13945826	119307662	16227085	29	4825											
KRTAP5-5	439915	hgsc.bcm.edu;broad.mit.edu	37	chr11	1651442	1651442	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtggctcctgtgggggGtccaaggggggctgtggctc	21	9	0	0	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	KRTAP5-5,bladder,carcinoma,0,4	KRTAP5-5	NM_001001480	exon1	c.G372C	p.G124G	TGGGGGGTCCAAG		28	3	0.11	37	1	0.027027027		0	4	0	0					C	1651442	G	C	1651442	2	2	69	1	0	0	0	0	0	0	0	1	8602	1248	44	5		5	KRTAP5-5	11	1651442	Silent	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10		1651442	133355074	30	4826											
LRRC4C	57689	broad.mit.edu	37	chr11	40137725	40137725	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtctgagcccgcaccagacCagccaccacaagaagttgaa	10	14	1	4	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	LRRC4C	NM_020929	exon5	c.G118A	p.G40S	CCAGACCAGCCAC		110	4	0.04	137	0	0		190		0	0					T	40137725	C	T	40137725	3	4	69	1	0	0	0	0	1	0	0	0	9052	594	21	3	1808	3	LRRC4C	11	40137725	Missense_Mutation	SNP	C	TCGA-2G-AALQ-01A-12D-A42Y-10	38486283	40137725	94868791	31	4827											
PSMC3	5702	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	47445698	47445698	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgagtcatactctgtgggcaGcgtctccaggatcagatagg	13	10	4	1	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_002804	exon6	c.C490T	p.L164L	TGGGCAGCGTCTC		80	12	0.15	97	0	0				355	75	0.21				A	47445698	G	A	47445698	2	1	69	1	0	0	0	0	0	0	0	1	12735	962	34	2		2	PSMC3	11	47445698	Silent	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	7307973	47445698	87560818	32	4828											
BBS1	582	mdanderson.org	37	chr11	66290988	66290988	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctgtgggacttatccggGtacacaaggtcctagtggtg	14	9	0	0	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_024649	exon10	c.G892T	p.V298L	ATCCGGGTACACA		47	3	0.06	121	0	0				15	0	0				T	66290988	G	T	66290988	3	4	69	1	0	0	0	0	1	0	0	0	1333	1261	44	3	930	3	BBS1	11	66290988	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	18845290	66290988	68715528	33	4829											
SUV420H1	51111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	67925696	67925697	+	Frame_Shift_Del	DEL	TG	TG	-													agttattttctaggattaacTgtgcatcataccttgtgatt					novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	TG	TG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_017635	exon11	c.2117_2118del	p.706_706del	ATTAACTGTGCAT		123	49	0.4	107	0	0				7	0	0				-	67925697	TG	-	67925696	7	5	69	1	0	1	0	1	0	0	0	0	15469	1580	55	0	544	0	SUV420H1	11	67925696	Frame_Shift_Del	DEL	TG	TCGA-2G-AALQ-01A-12D-A42Y-10	1634708	67925696	67080820	34	4830											
LRRC32	2615	mdanderson.org	37	chr11	76370909	76370909	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgccagccagccattgccGcagcagctgagtggattccc	12	15	0	1	rs202216778	by1000genomes	TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001128922	exon3	c.C1728T	p.C576C	ATTGCCGCAGCAG		36	3	0.08	51	1	0.0196078431	0			11	0	0				A	76370909	G	A	76370909	2	1	69	1	0	0	0	0	0	0	0	1	9031	1079	38	1		1	LRRC32	11	76370909	Silent	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	8445213	76370909	58635607	35	4831											
VSIG2	23584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	124619734	124619734	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cccacagaggtttgtccactCtgactgcataagggattact	9	11	1	2	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_014312	exon4	c.G456C	p.Q152H	TCCACTCTGACTG		42	14	0.33	39	0	0				7	2	0.29				G	124619734	C	G	124619734	3	3	69	1	0	0	0	0	1	0	0	0	17283	912	32	5	543	5	VSIG2	11	124619734	Missense_Mutation	SNP	C	TCGA-2G-AALQ-01A-12D-A42Y-10	48248825	124619734	10386782	36	4832											
CHD4	1108	broad.mit.edu	37	chr12	6709741	6709741	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcggagtttcttgcggctgCggctactacggctggtggaa	15	9	1	0	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	CHD4	NM_001273	exon8	c.G1022A	p.R341H	CGGCTGCGGCTAC		208	5	0.02	103	0	0		539		84	0	0				T	6709741	C	T	6709741	3	4	69	1	0	0	0	0	1	0	0	0	3349	768	27	1	4848	1	CHD4	12	6709741	Missense_Mutation	SNP	C	TCGA-2G-AALQ-01A-12D-A42Y-10		6709741	127142154	37	4833											
MLF2	8079	broad.mit.edu	37	chr12	6858045	6858045	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggcccctccgcccttcgTcccccagcccctgaggactc	10	21	0	1	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	MLF2	NM_005439	exon8	c.A663G	p.G221G	CCTTCGTCCCCCA		181	25	0.14	102	7	0.068627451		26		862	41	0.05				C	6858045	T	C	6858045	2	2	69	1	0	0	0	0	0	0	0	1	9663	1654	58	4		4	MLF2	12	6858045	Silent	SNP	T	TCGA-2G-AALQ-01A-12D-A42Y-10	148304	6858045	126993850	38	4834											
DIP2B	57609	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr12	51034560	51034560	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accagacacctgctccatctGcagctcaaacttctgctccc	5	18	3	1	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_173602	exon3	c.G226T	p.A76S	CCATCTGCAGCTC		107	5	0.05	84	0	0				3	0	0				T	51034560	G	T	51034560	3	4	69	1	0	0	0	0	1	0	0	0	4556	1319	46	2	236	2	DIP2B	12	51034560	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	44176515	51034560	82817335	39	4835											
ZFC3H1	196441	mdanderson.org	37	chr12	72041536	72041536	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agcagtatcttaccttttcaGacagaatatctgaggtacta	7	8	3	3	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_144982	exon3	c.C1073A	p.S358Y	TTTTCAGACAGAA		49	3	0.06	32	0	0				0	0					T	72041536	G	T	72041536	3	4	69	1	0	0	0	0	1	0	0	0	17690	942	33	3	5028	3	ZFC3H1	12	72041536	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	21006976	72041536	61810359	40	4836											
TRAFD1	10906	broad.mit.edu	37	chr12	112579948	112579948	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	caacagccccccaaagagggTggtgaagagagtgcaaactt	12	10	0	3	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	TRAFD1	NM_001143906	exon6	c.T699G	p.G233G	AGAGGGTGGTGAA		76	10	0.13	58	7	0.1206896552		42		41	0	0				G	112579948	T	G	112579948	2	3	69	1	0	0	0	0	0	0	0	1	16507	1683	59	4		4	TRAFD1	12	112579948	Silent	SNP	T	TCGA-2G-AALQ-01A-12D-A42Y-10	40538412	112579948	21271947	41	4837											
TPTE2	93492	bcgsc.ca	37	chr13	20056686	20056686	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttggaaagtcgttctaacaTactttagccaccaaaaaaaa	5	9	1	0	rs201542496		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	TPTE2	NM_199254	exon5	c.A121G	p.M41V	CTAACATACTTTA		421	12	0.03	436	2	0.004587156		225		0	0					C	20056686	T	C	20056686	3	2	69	1	0	0	0	0	1	0	0	0	16491	1420	49	4	1515	4	TPTE2	13	20056686	Missense_Mutation	SNP	T	TCGA-2G-AALQ-01A-12D-A42Y-10		20056686	95113192	42	4838											
RXFP2	122042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	32367149	32367149	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaacttttatgggaaaaaTggagtatgtttcccacttta	9	5	0	0	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_130806	exon16	c.T1710A	p.N570K	GAAAAATGGAGTA		73	15	0.21	125	0	0				0	0					A	32367149	T	A	32367149	3	1	69	1	0	0	0	0	1	0	0	0	13811	1461	51	5	1772	5	RXFP2	13	32367149	Missense_Mutation	SNP	T	TCGA-2G-AALQ-01A-12D-A42Y-10	12310463	32367149	82802729	43	4839											
THSD1	55901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	52952281	52952281	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggcctgagtcacatttagAtccagcctggagggaggcct	13	11	1	2	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_018676	exon5	c.T1824A	p.D608E	ATTTAGATCCAGC		66	7	0.11	119	0	0				4	0	0				T	52952281	A	T	52952281	3	4	69	1	0	0	0	0	1	0	0	0	15936	330	12	5	738	5	THSD1	13	52952281	Missense_Mutation	SNP	A	TCGA-2G-AALQ-01A-12D-A42Y-10	20585132	52952281	62217597	44	4840											
SALL2	6297	hgsc.bcm.edu	37	chr14	21991589	21991589	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcagacaactcctcttccGgtgatggctgctgggactgc	11	14	2	2	rs372214185	alternate_allele	TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	SALL2,colon,carcinoma,0,1	SALL2	NM_005407	exon2	c.C2273A	p.P758Q	TCTTCCGGTGATG		62	5	0.08	64	0	0		0	1	93	0	0				T	21991589	G	T	21991589	3	4	69	1	0	0	0	0	1	0	0	0	13862	1116	39	1	754	1	SALL2	14	21991589	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10		21991589	85357951	45	4841											
NYNRIN	57523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	24880356	24880356	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tttctggaaccggggacaccGagaggtcactgtgtttgtac	13	9	2	1	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_025081	exon5	c.G2489A	p.R830Q	GACACCGAGAGGT		86	17	0.2	106	0	0				66	18	0.27				A	24880356	G	A	24880356	3	1	69	1	0	0	0	0	1	0	0	0	10843	1058	37	1	2503	1	NYNRIN	14	24880356	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	2888767	24880356	82469184	46	4842											
OTUD7A	161725	mdanderson.org	37	chr15	31779760	31779760	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgctcagaatccgtcaggGggatcacggctggaacagaa	14	9	3	2	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_130901	exon9	c.C1160A	p.P387H	GTCAGGGGGATCA		90	5	0.06	126	0	0				0	0					T	31779760	G	T	31779760	3	4	69	1	0	0	0	0	1	0	0	0	11364	1232	43	3	1632	3	OTUD7A	15	31779760	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10		31779760	70751632	47	4843											
KLHL25	64410	mdanderson.org	37	chr15	86311959	86311959	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cattcctcatgtacggtgtcGtacacccagacatccttgga	8	13	1	1	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_022480	exon2	c.C1083T	p.Y361Y	GGTGTCGTACACC		39	3	0.08	71	0	0				9	0	0				A	86311959	G	A	86311959	2	1	69	1	0	0	0	0	0	0	0	1	8422	1140	40	1		1	KLHL25	15	86311959	Silent	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	54532199	86311959	16219433	48	4844											
IGFALS	3483	mdanderson.org	37	chr16	1840925	1840925	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtggtgccaagaggctgttGggcaatgcctccaggcggtt	16	9	0	1	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001146006	exon2	c.C1608A	p.P536P	GCTGTTGGGCAAT		13	2	0.15	15	0	0				8	0	0				T	1840925	G	T	1840925	2	4	69	1	0	0	0	0	0	0	0	1	7620	1335	47	3		3	IGFALS	16	1840925	Silent	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10		1840925	88513828	49	4845											
AMDHD2	51005	mdanderson.org	37	chr16	2579075	2579075	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tggagaagagtaaggggaccCtggactttggtgctgacgca	16	7	0	3	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001145815	exon9	c.C1210A	p.L404M	GGGACCCTGGACT		28	3	0.11	35	0	0				58	0	0				A	2579075	C	A	2579075	3	1	69	1	0	0	0	0	1	0	0	0	564	680	24	3	1244	3	AMDHD2	16	2579075	Missense_Mutation	SNP	C	TCGA-2G-AALQ-01A-12D-A42Y-10	738150	2579075	87775678	50	4846											
OR2C1	4993	mdanderson.org	37	chr16	3406294	3406294	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatcctgctggtggtgatGgcatttgaccgctacgtggc	14	10	0	2	rs144910600	alternate_allele	TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_012368	exon1	c.G354T	p.M118I	GGTGATGGCATTT		50	3	0.06	59	1	0.0169491525				0	0					T	3406294	G	T	3406294	3	4	69	1	0	0	0	0	1	0	0	0	11039	1348	47	3	356	3	OR2C1	16	3406294	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	827219	3406294	86948459	51	4847											
TFAP4	7023	bcgsc.ca;mdanderson.org	37	chr16	4312419	4312419	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggctgtctgctggagaatgGctgcctgagggcgtggaaaa	17	8	1	2	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	TFAP4	NM_003223	exon3	c.C260T	p.A87V	AGAATGGCTGCCT		89	5	0.06	64	0	0		31		61	0	0				A	4312419	G	A	4312419	3	1	69	1	0	0	0	0	1	0	0	0	15851	1203	42	2	776	2	TFAP4	16	4312419	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	906125	4312419	86042334	52	4848											
GSPT1	2935	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	11990539	11990539	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgggcactttcctctggCggccttccatctcccaagga	9	15	3	0	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	GSPT1	NM_002094	exon4	c.G540T	p.P180P	CTCTGGCGGCCTT		196	65	0.33	142	0	0		71		58	19	0.33				A	11990539	C	A	11990539	2	1	69	1	0	0	0	0	0	0	0	1	6866	755	27	1		1	GSPT1	16	11990539	Silent	SNP	C	TCGA-2G-AALQ-01A-12D-A42Y-10	7678120	11990539	78364214	53	4849											
PLA2G15	23659	mdanderson.org	37	chr16	68279456	68279456	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaccccccagtggtgctgGgtgaggcacgggtctcgtgg	17	12	2	1	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_012320	exon1	c.G127T	p.V43F	GTGCTGGGTGAGG		16	2	0.13	23	0	0				22	0	0				T	68279456	G	T	68279456	3	4	69	1	0	0	0	0	1	0	0	0	12039	1246	43	3	129	3	PLA2G15	16	68279456	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	56288917	68279456	22075297	54	4850											
ANKRD11	29123	broad.mit.edu	37	chr16	89346906	89346906	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaggcgggaggggcggggTacggcgcctccgaggcgctg	23	10	0	1	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	ANKRD11	NM_001256183	exon9	c.A6044C	p.Y2015S	GCGGGGTACGGCG		58	30	0.52	53	37	0.6981132075		195		63	13	0.21				G	89346906	T	G	89346906	3	3	69	1	0	0	0	0	1	0	0	0	635	1638	57	4	1967	4	ANKRD11	16	89346906	Missense_Mutation	SNP	T	TCGA-2G-AALQ-01A-12D-A42Y-10	21067450	89346906	1007847	55	4851											
MSL1	339287	mdanderson.org	37	chr17	38288344	38288344	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacccaaatccttcagaccTtttggaggtaggtaaccaag	10	10	1	1	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001012241	exon6	c.T692C	p.L231P	CAGACCTTTTGGA		47	3	0.06	60	0	0				46	0	0				C	38288344	T	C	38288344	3	2	69	1	0	0	0	0	1	0	0	0	9925	1609	56	4	706	4	MSL1	17	38288344	Missense_Mutation	SNP	T	TCGA-2G-AALQ-01A-12D-A42Y-10		38288344	42906866	56	4852											
ACE	1636	mdanderson.org	37	chr17	61561704	61561704	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaccaggaaggtgctgcagGctggctcctccaggccctgg	14	15	0	0	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_000789	exon12	c.G1723A	p.A575T	CTGCAGGCTGGCT		37	3	0.08	38	0	0				6	0	0				A	61561704	G	A	61561704	3	1	69	1	0	0	0	0	1	0	0	0	136	1203	42	2	1769	2	ACE	17	61561704	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	23273360	61561704	19633506	57	4853											
SETBP1	26040	mdanderson.org	37	chr18	42531720	42531720	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcagagttgaaaactatGccaaatctccagcccatcag	6	11	3	2	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_015559	exon4	c.G2415T	p.M805I	AACTATGCCAAAT		46	3	0.07	69	0	0				4	0	0				T	42531720	G	T	42531720	3	4	69	1	0	0	0	0	1	0	0	0	14182	1319	46	2	2618	2	SETBP1	18	42531720	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10		42531720	35545528	58	4854											
MYO5B	4645	ucsc.edu	37	chr18	47429149	47429149	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgctggaagtgcctgcgtgCcatccagccccgcacgtgct	12	17	0	0	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	MYO5B	NM_001080467	exon21	c.G2626A	p.A876T	TGCGTGCCATCCA		21	4	0.19	15	0	0		178		5	0	0				T	47429149	C	T	47429149	3	4	69	1	0	0	0	0	1	0	0	0	10126	739	26	2	3000	2	MYO5B	18	47429149	Missense_Mutation	SNP	C	TCGA-2G-AALQ-01A-12D-A42Y-10	4897429	47429149	30648099	59	4855											
GRP	2922	mdanderson.org	37	chr18	56887564	56887564	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctggcgccccgggggcgaGcggtcccgctgcctgcgggc	19	17	0	0	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001012512	exon1	c.G67T	p.A23S	GGGCGAGCGGTCC		15	3	0.2	14	0	0				7	0	0				T	56887564	G	T	56887564	3	4	69	1	0	0	0	0	1	0	0	0	6845	971	34	2	69	2	GRP	18	56887564	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	9458415	56887564	21189684	60	4856											
APC2	10297	mdanderson.org	37	chr19	1467050	1467050	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgactgccgggagcgctgCcggctgccatctgagctgga	16	14	1	1	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_005883	exon15	c.C3750T	p.C1250C	GCGCTGCCGGCTG		44	3	0.07	48	0	0				4	0	0				T	1467050	C	T	1467050	2	4	69	1	0	0	0	0	0	0	0	1	760	747	26	2		2	APC2	19	1467050	Silent	SNP	C	TCGA-2G-AALQ-01A-12D-A42Y-10		1467050	57661933	61	4857											
MEX3D	399664	mdanderson.org	37	chr19	1556639	1556639	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggatgcgcttgatggtggcGcccttgggccccaccaccag	14	14	0	1	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001174118	exon2	c.C879A	p.G293G	GGTGGCGCCCTTG		23	3	0.13	42	0	0				42	0	0				T	1556639	G	T	1556639	2	4	69	1	0	0	0	0	0	0	0	1	9561	1074	38	1		1	MEX3D	19	1556639	Silent	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	89589	1556639	57572344	62	4858											
CPAMD8	27151	mdanderson.org	37	chr19	17038840	17038840	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgatggaggcggtggctcGctcagacccagggatggcgc	18	10	1	2	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_015692	exon25	c.C3490A	p.R1164R	TGGCTCGCTCAGA		72	4	0.06	76	0	0				18	0	0				T	17038840	G	T	17038840	2	4	69	1	0	0	0	0	0	0	0	1	3818	1095	38	1		1	CPAMD8	19	17038840	Silent	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	15482201	17038840	42090143	63	4859											
NCCRP1	342897	mdanderson.org	37	chr19	39691041	39691041	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgcatgtctggctgctgGcggccgaccgccgcacggtc	15	15	1	0	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	NCCRP1,colon,carcinoma,-1,1	NCCRP1	NM_001001414	exon5	c.G604T	p.A202S	CTGCTGGCGGCCG		46	3	0.07	55	0	0		-1	1	15	0	0				T	39691041	G	T	39691041	3	4	69	1	0	0	0	0	1	0	0	0	10259	1203	42	2	622	2	NCCRP1	19	39691041	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	22652201	39691041	19437942	64	4860											
FIZ1	84922	mdanderson.org	37	chr19	56109217	56109217	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggtgcaggggttggggcGgggacgtcatccatggtggc	21	8	1	0	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_032836	exon2	c.C15A	p.P5P	TGGGGCGGGGACG		41	3	0.07	41	0	0				10	0	0				T	56109217	G	T	56109217	2	4	69	1	0	0	0	0	0	0	0	1	5932	1103	39	1		1	FIZ1	19	56109217	Silent	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	16418176	56109217	3019766	65	4861											
ZSCAN18	65982	mdanderson.org	37	chr19	58600117	58600117	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggctggggctcgcgagctcgCctggtagcagcagagggtcc	18	12	0	1	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001145542	exon3	c.G659C	p.G220A	AGCTCGCCTGGTA		30	2	0.07	43	0	0				41	0	0				G	58600117	C	G	58600117	3	3	69	1	0	0	0	0	1	0	0	0	18270	739	26	5	1061	5	ZSCAN18	19	58600117	Missense_Mutation	SNP	C	TCGA-2G-AALQ-01A-12D-A42Y-10	2490900	58600117	528866	66	4862											
PTPRT	11122	broad.mit.edu;mdanderson.org	37	chr20	40730919	40730919	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctcgggccgcacacgggGtgtcacaatgttgagggtct	15	11	2	1	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	PTPRT	NM_133170	exon27	c.C3616A	p.P1206T	CACGGGGTGTCAC		66	4	0.06	46	0	0		372		3	0	0				T	40730919	G	T	40730919	3	4	69	1	0	0	0	0	1	0	0	0	12863	1261	44	3	790	3	PTPRT	20	40730919	Missense_Mutation	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10		40730919	22294601	67	4863											
ELMO2	63916	mdanderson.org	37	chr20	45000326	45000326	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggctggatcttctccctcaGctccctggggtggacacaca	12	14	3	0	rs149080790	bycluster;byfrequency;by1000genomes	TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_133171	exon18	c.C1585T	p.L529L	CCCTCAGCTCCCT		51	3	0.06	31	0	0	0			49	0	0				A	45000326	G	A	45000326	2	1	69	1	0	0	0	0	0	0	0	1	5094	962	34	2		2	ELMO2	20	45000326	Silent	SNP	G	TCGA-2G-AALQ-01A-12D-A42Y-10	4269407	45000326	18025194	68	4864											
TRMU	55687	mdanderson.org	37	chr22	46731700	46731700	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcgtgtgcgccctgtccggCggcgtggacagcgccgtggc	18	14	0	0	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_018006	exon1	c.C39T	p.G13G	GTCCGGCGGCGTG		19	2	0.11	17	0	0				23	0	0				T	46731700	C	T	46731700	2	4	69	1	0	0	0	0	0	0	0	1	16631	755	27	1		1	TRMU	22	46731700	Silent	SNP	C	TCGA-2G-AALQ-01A-12D-A42Y-10		46731700	4572866	69	4865											
OCRL	4952	broad.mit.edu	37	chrX	128691868	128691868	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttcttgttccagagcaaaAggactcatctagctggtacc	9	11	3	1	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	OCRL	NM_000276	exon6	c.A380G	p.K127R	AGCAAAAGGACTC		708	8	0.01	357	1	0.0028011204		117		18	0	0				G	128691868	A	G	128691868	3	3	69	1	0	0	0	0	1	0	0	0	10870	72	3	4	402	4	OCRL	23	128691868	Missense_Mutation	SNP	A	TCGA-2G-AALQ-01A-12D-A42Y-10		128691868	26578692	70	4866											
GPC3	2719	broad.mit.edu	37	chrX	133119396	133119396	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggcgtccggcggcggcggCgggggctgcgcctgtcccgg	22	14	0	0	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	GPC3	NM_001164617	exon1	c.G81C	p.P27P	CGGCGGCGGGGGC		245	5	0.02	139	1	0.0071942446		88		869	2	0				G	133119396	C	G	133119396	2	3	69	1	0	0	0	0	0	0	0	1	6638	755	27	5		5	GPC3	23	133119396	Silent	SNP	C	TCGA-2G-AALQ-01A-12D-A42Y-10	4427528	133119396	22151164	71	4867											
PIK3CD	5293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	9780069	9780069	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctctacatgtggccctccGtcccaggtcggcccaggccc	11	19	1	0	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_005026	exon10	c.G1333A	p.V445I	CCCTCCGTCCCAG		116	11	0.09	137	0	0				12	2	0.17				A	9780069	G	A	9780069	3	1	70	1	0	0	0	0	1	0	0	0	11962	1145	40	1	1363	1	PIK3CD	1	9780069	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10		9780069	239470552	1	4868											
HTR6	3362	mdanderson.org	37	chr1	20005666	20005666	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccgctgcccctgccgccGgactcagattcggactcaga	11	17	2	2	rs201944154		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_000871	exon3	c.G1128T	p.P376P	GCCGCCGGACTCA		23	2	0.09	32	0	0				0	0					T	20005666	G	T	20005666	2	4	70	1	0	0	0	0	0	0	0	1	7494	1103	39	1		1	HTR6	1	20005666	Silent	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	10225597	20005666	229244955	2	4869											
TMEM39B	55116	mdanderson.org	37	chr1	32541383	32541383	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caacatctacaagacagtgtGgtggtatccaccttcccacc	7	14	1	1	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_018056	exon3	c.G311T	p.W104L	CAGTGTGGTGGTA		43	3	0.07	67	0	0				30	0	0				T	32541383	G	T	32541383	3	4	70	1	0	0	0	0	1	0	0	0	16221	1357	47	3	321	3	TMEM39B	1	32541383	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	12535717	32541383	216709238	3	4870											
TMCO2	127391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	40713810	40713810	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gactattagataatcttgctCcagctgtgcaaatcatcttg	7	9	3	1	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	TMCO2,NS,carcinoma,0,1	TMCO2	NM_001008740	exon1	c.C145G	p.P49A	CTTGCTCCAGCTG		129	31	0.24	109	0	0		0	1	0	0					G	40713810	C	G	40713810	3	3	70	1	0	0	0	0	1	0	0	0	16055	855	30	5	147	5	TMCO2	1	40713810	Missense_Mutation	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10	8172427	40713810	208536811	4	4871											
NFIA	4774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	61548476	61548477	+	Frame_Shift_Del	DEL	CT	CT	-													cggcagttatgtattctccgCtctgtctcacccaggtaagc					novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	CT	CT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	NFIA	NM_001145512	exon2	c.147_148del	p.49_50del	TCTCCGCTCTGTC		351	94	0.27	294	0	0		76		22	0	0				-	61548477	CT	-	61548476	7	5	70	1	0	1	0	1	0	0	0	0	10416	797	28	0	161	0	NFIA	1	61548476	Frame_Shift_Del	DEL	CT	TCGA-2G-AALR-01A-21D-A42Y-10	20834666	61548476	187702145	5	4872											
CLCA1	1179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	86959124	86959124	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgaatggcacagtgatcGtggacagcaccgtgggaaag	16	7	0	2	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	CLCA1,colon,carcinoma,-2,1	CLCA1	NM_001285	exon10	c.G1522A	p.V508M	GTGATCGTGGACA		138	9	0.07	148	0	0		-2	1	0	0					A	86959124	G	A	86959124	3	1	70	1	0	0	0	0	1	0	0	0	3480	1145	40	1	1560	1	CLCA1	1	86959124	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	25410648	86959124	162291497	6	4873											
CHRNB2	1141	mdanderson.org	37	chr1	154544318	154544318	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgggtgaaggtcgtcttccTggagaagctgcccgcgctgc	15	12	1	2	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_000748	exon5	c.T1019C	p.L340P	TCTTCCTGGAGAA		39	3	0.08	43	0	0				1	0	0				C	154544318	T	C	154544318	3	2	70	1	0	0	0	0	1	0	0	0	3413	1580	55	4	1037	4	CHRNB2	1	154544318	Missense_Mutation	SNP	T	TCGA-2G-AALR-01A-21D-A42Y-10	67585194	154544318	94706303	7	4874											
CD1E	913	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	158324199	158324199	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaatcctatcatctagcaGcagaggagcagctgtccttc	8	12	2	1	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	CD1E,NS,carcinoma,0,1	CD1E	NM_001185107	exon2	c.G91T	p.A31S	CTAGCAGCAGAGG		164	10	0.06	119	0	0		0	1	0	0					T	158324199	G	T	158324199	3	4	70	1	0	0	0	0	1	0	0	0	3000	971	34	2	97	2	CD1E	1	158324199	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	3779881	158324199	90926422	8	4875											
SPTA1	6708	hgsc.bcm.edu	37	chr1	158622412	158622412	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcaatagacgacgtctgcGttcttctgcccgatccaaga	9	12	3	2	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	SPTA1,NS,carcinoma,+1,3	SPTA1	NM_003126	exon23	c.C3220A	p.R1074S	GTCTGCGTTCTTC		110	5	0.05	100	0	0		1	3	0	0					T	158622412	G	T	158622412	3	4	70	1	0	0	0	0	1	0	0	0	15171	1145	40	1	4159	1	SPTA1	1	158622412	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	298213	158622412	90628209	9	4876											
ITLN1	55600	ucsc.edu	37	chr1	160851880	160851880	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcccaccgtgcacttcccaCgcatgtcattctcgtgcacg	8	18	2	0	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	ITLN1	NM_017625	exon4	c.G272A	p.R91H	TTCCCACGCATGT		176	1	0.01	127	0	0		45		33	23	0.7				T	160851880	C	T	160851880	3	4	70	1	0	0	0	0	1	0	0	0	7953	536	19	1	689	1	ITLN1	1	160851880	Missense_Mutation	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10	2229468	160851880	88398741	10	4877											
GPD2	2820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	157435487	157435487	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaacagatcgctctgaaatTagcctactgccttcagacat	6	11	2	3	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001083112	exon14	c.T1854C	p.I618I	TGAAATTAGCCTA		52	6	0.12	77	0	0				15	4	0.27				C	157435487	T	C	157435487	2	2	70	1	0	0	0	0	0	0	0	1	6645	1742	61	4		4	GPD2	2	157435487	Silent	SNP	T	TCGA-2G-AALR-01A-21D-A42Y-10		157435487	85763886	11	4878											
TTN	7273	broad.mit.edu	37	chr2	179449465	179449465	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaatcggttttcagcacGgacccggaagatgtactcct	10	12	1	1	rs201614524	bycluster;alternate_allele	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	TTN_ENST00000359218,NS,carcinoma,+1,9	TTN	NM_001267550	exon310	c.C64903A	p.R21635S	CAGCACGGACCCG		144	3	0.02	178	0	0		18412	9	0	0					T	179449465	G	T	179449465	3	4	70	1	0	0	0	0	1	0	0	0	16796	1116	39	1	43288	1	TTN	2	179449465	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	22013978	179449465	63749908	12	4879											
ABCA12	26154	mdanderson.org	37	chr2	215910734	215910734	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctgattgttggggtcactGgatagcttaaaatataaaac	9	5	2	1	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_173076	exon7	c.C699A	p.S233S	GTCACTGGATAGC		45	3	0.07	57	0	0				1	0	0				T	215910734	G	T	215910734	2	4	70	1	0	0	0	0	0	0	0	1	30	1335	47	3		3	ABCA12	2	215910734	Silent	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	36461269	215910734	27288639	13	4880											
UBE2F	140739	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	238881845	238881846	+	Frame_Shift_Del	DEL	GA	GA	-													tcgactcggagggtttctgtGagagacaaattgcttgttaa					novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	GA	GA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	UBE2F	NM_080678	exon2	c.95_96del	p.32_32del	TTCTGTGAGAGAC		35	14	0.4	51	0	0		11		72	0	0				-	238881846	GA	-	238881845	7	5	70	1	0	1	0	1	0	0	0	0	16915	1277	45	0	98	0	UBE2F	2	238881845	Frame_Shift_Del	DEL	GA	TCGA-2G-AALR-01A-21D-A42Y-10	22971111	238881845	4317528	14	4881											
ZNF502	91392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	44762585	44762585	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ataactttcatccacaaagaAgcaccccctgaaattattag	4	11	1	2	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001134440	exon4	c.A276G	p.E92E	CAAAGAAGCACCC		106	11	0.1	116	0	0				8	5	0.63				G	44762585	A	G	44762585	2	3	70	1	0	0	0	0	0	0	0	1	18006	69	3	4		4	ZNF502	3	44762585	Silent	SNP	A	TCGA-2G-AALR-01A-21D-A42Y-10		44762585	153259845	15	4882											
NLGN1	22871	hgsc.bcm.edu	37	chr3	173525625	173525627	+	Splice_Site	DEL	AAG	AAG	-													atcgacttggagtactcggtAagaagagtctctcttttgtt					novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	AAG	AAG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	NLGN1	.	.	.	.	CTCGGTAAGAAGA		123	19	0.15	81	0	0		209		0	0					-	173525627	AAG	-	173525625	8	5	70	1	0	1	0	1	0	0	1	0	10507	377	13	0		0	NLGN1	3	173525625	Splice_Site	DEL	AAG	TCGA-2G-AALR-01A-21D-A42Y-10	128763040	173525625	24496805	16	4883											
MUC4	4585	broad.mit.edu	37	chr3	195509143	195509143	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctagtgacaggaagaggcGtggtgtcacctgtggatact	16	7	1	2	rs200380706		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	MUC4	NM_018406	exon2	c.C9308T	p.T3103M	AGAGGCGTGGTGT		175	4	0.02	95	1	0.0105263158		1505		0	0					A	195509143	G	A	195509143	3	1	70	1	0	0	0	0	1	0	0	0	10025	1145	40	1		1	MUC4	3	195509143	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	21983518	195509143	2513287	17	4884											
HOPX	84525	mdanderson.org	37	chr4	57516927	57516927	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggggtagccttctctttGggggctactttctgggtgcc	15	9	2	0	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001145460	exon4	c.C250A	p.Q84K	CTCTTTGGGGGCT		51	4	0.08	65	0	0				0	0					T	57516927	G	T	57516927	3	4	70	1	0	0	0	0	1	0	0	0	7325	1357	47	3	163	3	HOPX	4	57516927	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10		57516927	133637349	18	4885											
ADH1B	125	broad.mit.edu	37	chr4	100235056	100235056	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctttagcacttcctgaatGggtttcttgtagtcttgagg	10	8	2	2	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	ADH1B	NM_000668	exon6	c.C750T	p.P250P	CTGAATGGGTTTC		199	17	0.09	253	0	0		68		8	2	0.25				A	100235056	G	A	100235056	2	1	70	1	0	0	0	0	0	0	0	1	307	1335	47	3		3	ADH1B	4	100235056	Silent	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	42718129	100235056	90919220	19	4886											
CTNND2	1501	mdanderson.org	37	chr5	11346670	11346670	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctggaaggtggccgcggcgGcattctgtgggccgtgctgg	19	10	2	0	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001332	exon9	c.C1442T	p.A481V	GCGGCGGCATTCT		29	3	0.1	39	0	0				9	0	0				A	11346670	G	A	11346670	3	1	70	1	0	0	0	0	1	0	0	0	4044	1203	42	2	2291	2	CTNND2	5	11346670	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10		11346670	169568590	20	4887											
DAB2	1601	broad.mit.edu	37	chr5	39390003	39390003	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cattatagataacttgaaaaAggtctttaagatcaacaact	5	6	2	3	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	DAB2	NM_001343	exon6	c.T494C	p.L165P	TGAAAAAGGTCTT		414	7	0.02	522	0	0		124		27	0	0				G	39390003	A	G	39390003	3	3	70	1	0	0	0	0	1	0	0	0	4242	72	3	4	1854	4	DAB2	5	39390003	Missense_Mutation	SNP	A	TCGA-2G-AALR-01A-21D-A42Y-10	28043333	39390003	141525257	21	4888											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	90016770	90016770	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	agagccacctccatagacatCgaagaagccaataggaccgt	9	12	0	3	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_032119	exon45	c.C9642G	p.I3214M	AGACATCGAAGAA		78	38	0.49	119	0	0				1	1	1				G	90016770	C	G	90016770	3	3	70	1	0	0	0	0	1	0	0	0	6761	874	31	5	9820	5	GPR98	5	90016770	Missense_Mutation	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10	50626767	90016770	90898490	22	4889											
APC	324	hgsc.bcm.edu;broad.mit.edu	37	chr5	112179374	112179374	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaggcaaatccaaacattAaagattcaaaagataatcag	5	6	2	2	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001127510	exon17	c.A8083G	p.K2695E	AACATTAAAGATT		98	4	0.04	100	0	0				42	4	0.1				G	112179374	A	G	112179374	3	3	70	1	0	0	0	0	1	0	0	0	759	363	13	4	8141	4	APC	5	112179374	Missense_Mutation	SNP	A	TCGA-2G-AALR-01A-21D-A42Y-10	22162604	112179374	68735886	23	4890											
ZNF300	91975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	150276491	150276491	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cttatgatggaaggaaactgTccccaaaatacatgactggg	10	8	0	2	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001172831	exon7	c.A358T	p.T120S	AAACTGTCCCCAA		105	40	0.38	108	0	0				14	6	0.43				A	150276491	T	A	150276491	3	1	70	1	0	0	0	0	1	0	0	0	17887	1667	58	5	1508	5	ZNF300	5	150276491	Missense_Mutation	SNP	T	TCGA-2G-AALR-01A-21D-A42Y-10	38097117	150276491	30638769	24	4891											
GABRP	2568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	170235654	170235654	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcttcggaggaatgttctgTatttcattttggaaacctac	9	7	2	0	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_014211	exon8	c.T730C	p.Y244H	GTTCTGTATTTCA		123	44	0.36	136	0	0				0	0					C	170235654	T	C	170235654	3	2	70	1	0	0	0	0	1	0	0	0	6208	1638	57	4	756	4	GABRP	5	170235654	Missense_Mutation	SNP	T	TCGA-2G-AALR-01A-21D-A42Y-10	19959163	170235654	10679606	25	4892											
CLTB	1212	mdanderson.org	37	chr5	175823488	175823488	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	acagacacgtacacgtagccGatgatatcagcatctggctg	10	11	2	2	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	CLTB,NS,carcinoma,0,1	CLTB	NM_007097	exon5	c.C510A	p.I170I	GTAGCCGATGATA		38	3	0.08	39	0	0		0	1	11	0	0				T	175823488	G	T	175823488	2	4	70	1	0	0	0	0	0	0	0	1	3588	1048	37	1		1	CLTB	5	175823488	Silent	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	5587834	175823488	5091772	26	4893											
MGAT4B	11282	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	179228562	179228562	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgcccatacctccggtgCggccctggcccacgcgcacc	11	21	0	0	rs372861672	alternate_allele	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	MGAT4B	NM_054013	exon2	c.G461A	p.R154H	CCGGTGCGGCCCT		37	4	0.11	50	0	0		41		174	0	0				T	179228562	C	T	179228562	3	4	70	1	0	0	0	0	1	0	0	0	9595	768	27	1	1282	1	MGAT4B	5	179228562	Missense_Mutation	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10	3405074	179228562	1686698	27	4894											
HFE	3077	broad.mit.edu	37	chr6	26091799	26091799	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agttgctggagctggggagaGgtgttttggaccaacaaggt	17	5	0	1	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	HFE	NM_139006	exon3	c.G598C	p.G200R	GGGAGAGGTGTTT		298	6	0.02	336	1	0.0029761905		37		7	0	0				C	26091799	G	C	26091799	3	2	70	1	0	0	0	0	1	0	0	0	7121	1000	35	5	608	5	HFE	6	26091799	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10		26091799	145023268	28	4895											
MUC21	394263	hgsc.bcm.edu	37	chr6	30954870	30954870	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccaccaactctgagtccagTacgacctccagtggggccaa	10	15	1	1	rs9262377	bycluster	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	MUC21,rectum,carcinoma,0,1	MUC21	NM_001010909	exon2	c.T918C	p.S306S	GTCCAGTACGACC		47	2	0.04	40	1	0.025		0	1	0	0					C	30954870	T	C	30954870	2	2	70	1	0	0	0	0	0	0	0	1	10024	1635	57	4		4	MUC21	6	30954870	Silent	SNP	T	TCGA-2G-AALR-01A-21D-A42Y-10	4863071	30954870	140160197	29	4896											
LAMA2	3908	mdanderson.org	37	chr6	129637314	129637314	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaatttcatgcgacaaagCaggtaaactctaatagaaaa	8	6	2	1	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001079823	exon27	c.C4056T	p.S1352S	ACAAAGCAGGTAA		28	3	0.11	44	0	0				9	0	0				T	129637314	C	T	129637314	2	4	70	1	0	0	0	0	0	0	0	1	8644	709	25	2		2	LAMA2	6	129637314	Silent	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10	98682444	129637314	41477753	30	4897											
GPR146	115330	mdanderson.org	37	chr7	1097842	1097842	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggccggctggagccctcgGcacacaggctgctggtggcc	17	15	0	0	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_138445	exon1	c.G691A	p.A231T	CCCTCGGCACACA		13	2	0.15	12	0	0				8	0	0				A	1097842	G	A	1097842	3	1	70	1	0	0	0	0	1	0	0	0	6691	1203	42	2	693	2	GPR146	7	1097842	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10		1097842	158040821	31	4898											
PHKG1	5260	mdanderson.org	37	chr7	56155460	56155460	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcatcgcctgaccacactGctaacgcccctgggagtgca	10	15	0	1	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_006213	exon3	c.C93T	p.S31S	CACACTGCTAACG		25	3	0.12	26	0	0				2	0	0				A	56155460	G	A	56155460	2	1	70	1	0	0	0	0	0	0	0	1	11893	1310	46	2		2	PHKG1	7	56155460	Silent	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	55057618	56155460	102983203	32	4899											
TRRAP	8295	mdanderson.org	37	chr7	98553773	98553773	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccctgcgtccgcaggtgtActacccggtacggcaccact	12	16	0	0	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001244580	exon41	c.A5921G	p.Y1974C	AGGTGTACTACCC		20	2	0.1	38	0	0				12	0	0				G	98553773	A	G	98553773	3	3	70	1	0	0	0	0	1	0	0	0	16661	391	14	4	6021	4	TRRAP	7	98553773	Missense_Mutation	SNP	A	TCGA-2G-AALR-01A-21D-A42Y-10	42398313	98553773	60584890	33	4900											
TEX15	56154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	30700548	30700548	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttaaggtctgcaaattcagCctgatccaatatctcactaa	5	10	3	1	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_031271	exon1	c.G5986A	p.A1996T	ATTCAGCCTGATC		148	36	0.24	126	0	0				2	0	0				T	30700548	C	T	30700548	3	4	70	1	0	0	0	0	1	0	0	0	15837	739	26	2	2399	2	TEX15	8	30700548	Missense_Mutation	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10		30700548	115663474	34	4901											
ZFP41	286128	mdanderson.org	37	chr8	144332576	144332576	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacagctcctgtctcatccGccatcagaaacgccaccctc	5	19	2	1	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_173832	exon2	c.G563A	p.R188H	TCATCCGCCATCA		20	3	0.15	24	0	0				30	0	0				A	144332576	G	A	144332576	3	1	70	1	0	0	0	0	1	0	0	0	17706	1087	38	1	565	1	ZFP41	8	144332576	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	113632028	144332576	2031446	35	4902											
TTC39B	158219	mdanderson.org	37	chr9	15192619	15192619	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccactgccaagcttgacaCccccttcaaactcatagaag	5	17	2	2	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	TTC39B_ENST00000512701,NS,carcinoma,0,2	TTC39B_ENST00000512701	NM_152574	exon9	c.G899T	p.G300V	TTGACACCCCCTT		109	5	0.05	102	0	0		0	2	6	1	0.17				A	15192619	C	A	15192619	3	1	70	1	0	0	0	0	1	0	0	0	16769	507	18	3	1218	3	TTC39B	9	15192619	Missense_Mutation	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10		15192619	126020812	36	4903											
MLLT3	4300	broad.mit.edu	37	chr9	20414311	20414313	+	In_Frame_Del	DEL	CTG	CTG	-													tgctgctactgctgctgctaCtgctgctgctgctgctgctg					rs373338988	alternate_allele	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	CTG	CTG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	MLLT3,caecum,carcinoma,+1,1	MLLT3	NM_004529	exon5	c.531_533del	p.177_178del	CTGCTACTGCTGC		96	7	0.07	83	0	0		125	1	20	0	0				-	20414313	CTG	-	20414311	7	5	70	1	0	1	0	1	0	0	0	0	9675	565	20	0	1201	0	MLLT3	9	20414311	In_Frame_Del	DEL	CTG	TCGA-2G-AALR-01A-21D-A42Y-10	5221692	20414311	120799120	37	4904											
NFX1	4799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	33307242	33307242	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atgaaattccacatagctgtGgtgaggtttgtagaaagaaa	11	4	0	4	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_147134	exon5	c.G1321C	p.G441R	AGCTGTGGTGAGG		76	6	0.08	93	0	0				33	5	0.15				C	33307242	G	C	33307242	3	2	70	1	0	0	0	0	1	0	0	0	10433	1348	47	5	1339	5	NFX1	9	33307242	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	12892931	33307242	107906189	38	4905											
FANCG	2189	mdanderson.org	37	chr9	35074208	35074208	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agctttctaggtacagggggAgagacctggagagaaagaag	16	5	1	3	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_004629	exon14	c.T1766C	p.L589P	AGGGGGAGAGACC		51	3	0.06	61	1	0.0163934426				256	0	0				G	35074208	A	G	35074208	3	3	70	1	0	0	0	0	1	0	0	0	5700	304	11	4	106	4	FANCG	9	35074208	Missense_Mutation	SNP	A	TCGA-2G-AALR-01A-21D-A42Y-10	1766966	35074208	106139223	39	4906											
ANKRD20A1	84210	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr9	67968313	67968313	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agcaaacacagtgaaagtgtGaaaacagaaagaaacctaaa	8	6	0	4	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	ANKRD20A1	NM_032250	exon15	c.G1872A	p.V624V	AAGTGTGAAAACA		269	60	0.22	329	0	0		16		0	0					A	67968313	G	A	67968313	2	1	70	1	0	0	0	0	0	0	0	1	644	1277	45	3		3	ANKRD20A1	9	67968313	Silent	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	32894105	67968313	73245118	40	4907											
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	113169776	113169776	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	actgccattccaagttccatCttcctggcagatcagcacag	7	14	2	1	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_153366	exon38	c.G8104A	p.D2702N	TTCCATCTTCCTG		54	18	0.33	76	0	0				7	2	0.29				T	113169776	C	T	113169776	3	4	70	1	0	0	0	0	1	0	0	0	15475	913	32	3	2655	3	SVEP1	9	113169776	Missense_Mutation	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10	45201463	113169776	28043655	41	4908											
ENG	2022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	130578304	130578304	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggtgatgcccagcacggcGggcaggacgaggcctttgct	16	11	0	1	rs370943570		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001114753	exon14	c.C1770T	p.P590P	CACGGCGGGCAGG		70	27	0.39	95	0	0				153	30	0.2				A	130578304	G	A	130578304	2	1	70	1	0	0	0	0	0	0	0	1	5145	1103	39	1		1	ENG	9	130578304	Silent	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	17408528	130578304	10635127	42	4909											
USP20	10868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	132631164	132631164	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggacaatgatgctcacctaCgcagctcctctcgcccctgc	8	18	2	1	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001008563	exon12	c.C1159T	p.R387C	CACCTACGCAGCT		47	15	0.32	45	0	0				23	5	0.22				T	132631164	C	T	132631164	3	4	70	1	0	0	0	0	1	0	0	0	17111	536	19	1	1197	1	USP20	9	132631164	Missense_Mutation	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10	2052860	132631164	8582267	43	4910											
USP6NL	9712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	11569522	11569522	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcatatttagcaactatttCagctcgctcctgggcaagtt	8	10	2	0	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001080491	exon2	c.G100A	p.E34K	CTATTTCAGCTCG		44	11	0.25	57	0	0				8	4	0.5				T	11569522	C	T	11569522	3	4	70	1	0	0	0	0	1	0	0	0	17146	835	29	3	2489	3	USP6NL	10	11569522	Missense_Mutation	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10		11569522	123965225	44	4911											
EIF5AL1	143244	bcgsc.ca	37	chr10	81272627	81272627	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatatgaagatatctgcccGtcaactcataatatggatgt	7	7	3	2	rs75496770		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	EIF5AL1	NM_001099692	exon1	c.G222A	p.P74P	CTGCCCGTCAACT		94	42	0.45	145	20	0.1379310345		24		622	0	0				A	81272627	G	A	81272627	2	1	70	1	0	0	0	0	0	0	0	1	5071	1132	40	1		1	EIF5AL1	10	81272627	Silent	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	69703105	81272627	54262120	45	4912											
OBFC1	79991	mdanderson.org	37	chr10	105651979	105651979	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttaaatatactatgaattGccttggaagtggtgtccttc	8	7	1	1	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_024928	exon8	c.C785A	p.A262E	TGAATTGCCTTGG		44	3	0.07	58	0	0				41	0	0				T	105651979	G	T	105651979	3	4	70	1	0	0	0	0	1	0	0	0	10854	1319	46	2	333	2	OBFC1	10	105651979	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	24379352	105651979	29882768	46	4913											
C10orf90	118611	mdanderson.org	37	chr10	128202503	128202503	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctactgtggtagctgtcccGtaatcctaggcaaaagaaga	10	9	1	2	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	C10orf90,colon,carcinoma,0,1	C10orf90	NM_001004298	exon2	c.C28T	p.R10W	TGTCCCGTAATCC		35	3	0.09	46	0	0		0	1	0	0					A	128202503	G	A	128202503	3	1	70	1	0	0	0	0	1	0	0	0	1627	1144	40	1	2103	1	C10orf90	10	128202503	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	22550524	128202503	7332244	47	4914											
MUC6	4588	bcgsc.ca	37	chr11	1017519	1017519	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtggtagaagttgaggtgActtcaggatggtgtgtggag	19	2	1	3	rs112553306	bycluster;byfrequency	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	MUC6	NM_005961	exon31	c.T5282C	p.V1761A	GAGGTGACTTCAG		158	10	0.06	146	1	0.0068493151		408		169	3	0.02				G	1017519	A	G	1017519	3	3	70	1	0	0	0	0	1	0	0	0	10027	275	10	4	2049	4	MUC6	11	1017519	Missense_Mutation	SNP	A	TCGA-2G-AALR-01A-21D-A42Y-10		1017519	133988997	48	4915											
SCUBE2	57758	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr11	9096033	9096033	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gctgggcagaggtaccttccGagcggtgaatgcaggtgtgc	17	9	0	2	rs72549241	byfrequency	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	SCUBE2_ENST00000457346,NS,malignant_melanoma,+1,5	SCUBE2_ENST00000457346	NM_001170690	exon4	c.C512T	p.S171L	CCTTCCGAGCGGT		76	4	0.05	68	0	0	0.005	1	5	4	0	0				A	9096033	G	A	9096033	3	1	70	1	0	0	0	0	1	0	0	0	13998	1059	37	1	2654	1	SCUBE2	11	9096033	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	8078514	9096033	125910483	49	4916											
CRY2	1408	mdanderson.org	37	chr11	45892069	45892069	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatttaccagcagctttcgcGctaccggggactctgtaagg	12	11	1	0	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_021117	exon9	c.G1598A	p.R533H	TTTCGCGCTACCG		39	3	0.08	51	0	0				50	0	0				A	45892069	G	A	45892069	3	1	70	1	0	0	0	0	1	0	0	0	3927	1087	38	1	1668	1	CRY2	11	45892069	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	36796036	45892069	89114447	50	4917											
NDUFS3	4722	broad.mit.edu;mdanderson.org	37	chr11	47600657	47600657	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtaacatggcggcggcggCggtagccaggctgtggtggc	20	9	0	0	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	NDUFS3	NM_004551	exon1	c.C14T	p.A5V	CGGCGGCGGTAGC		35	3	0.09	33	0	0		19		134	0	0				T	47600657	C	T	47600657	3	4	70	1	0	0	0	0	1	0	0	0	10339	768	27	1	16	1	NDUFS3	11	47600657	Missense_Mutation	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10	1708588	47600657	87405859	51	4918											
KDM2A	22992	hgsc.bcm.edu	37	chr11	67018078	67018078	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggggggagaggaggaggaAgaggaggaggaggaggagga	26	1	0	2	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_012308	exon17	c.A2577G	p.E859E	GGAGGAAGAGGAG		56	6	0.11	36	0	0				11	0	0				G	67018078	A	G	67018078	2	3	70	1	0	0	0	0	0	0	0	1	8167	69	3	4		4	KDM2A	11	67018078	Silent	SNP	A	TCGA-2G-AALR-01A-21D-A42Y-10	19417421	67018078	67988438	52	4919											
APOA5	116519	mdanderson.org	37	chr11	116661077	116661077	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tatctgcaggtaggtgtcctGgcggaaagcctgaagtcgct	14	9	1	1	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_052968	exon4	c.C868A	p.Q290K	TGTCCTGGCGGAA		27	3	0.11	26	0	0				1	0	0				T	116661077	G	T	116661077	3	4	70	1	0	0	0	0	1	0	0	0	781	1357	47	3	236	3	APOA5	11	116661077	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	49642999	116661077	18345439	53	4920											
SLC2A14	144195	broad.mit.edu	37	chr12	7982382	7982382	+	Missense_Mutation	SNP	T	T	C													ctgggccaccagaattccaaTaactatgcccagctggttga					novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	SLC2A14	NM_153449	exon6	c.A562G	p.I188V	TTCCAATAACTAT		647	8	0.01	308	0	0		78		20	13	0.65	rescued with RNA-seq			C	7982382	T	C	7982382	3	2	70	1	0	0	0	0	1	0	0	0	14597	1406	49	4	1028	4	SLC2A14	12	7982382	Missense_Mutation	SNP	T	TCGA-2G-AALR-01A-21D-A42Y-10		7982382	125869513	54	4921	12	2									
SLC2A14	144195	broad.mit.edu	37	chr12	7982386	7982386	+	Silent	SNP	T	T	G													gccaccagaattccaataacTatgcccagctggttgagagt					novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	SLC2A14	NM_153449	exon6	c.A558C	p.I186I	AATAACTATGCCC		665	8	0.01	315	0	0		78		24	17	0.71	rescued with RNA-seq			G	7982386	T	G	7982386	2	3	70	1	0	0	0	0	0	0	0	1	14597	1512	53	4		4	SLC2A14	12	7982386	Silent	SNP	T	TCGA-2G-AALR-01A-21D-A42Y-10	4	7982386	125869509	55	4922	12	2									
SLC2A3	6515	broad.mit.edu;mdanderson.org	37	chr12	8083900	8083900	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagtgccaaaggcaccccGcagggcagtaggcgagatct	15	11	1	2	rs138143062		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	SLC2A3,bladder,carcinoma,0,1	SLC2A3	NM_006931	exon4	c.C451A	p.R151R	CACCCCGCAGGGC		680	18	0.03	325	0	0		83	1	1127	17	0.02				T	8083900	G	T	8083900	2	4	70	1	0	0	0	0	0	0	0	1	14599	1086	38	1		1	SLC2A3	12	8083900	Silent	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	101514	8083900	125767995	56	4923											
SLC2A3	6515	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	8084046	8084046	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccataaagcagccaccagtgAcagccaacaggttgacaatc	8	13	0	2	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	SLC2A3	NM_006931	exon4	c.T305C	p.V102A	CCAGTGACAGCCA		576	20	0.03	250	0	0		83		1203	23	0.02				G	8084046	A	G	8084046	3	3	70	1	0	0	0	0	1	0	0	0	14599	275	10	4	1213	4	SLC2A3	12	8084046	Missense_Mutation	SNP	A	TCGA-2G-AALR-01A-21D-A42Y-10	146	8084046	125767849	57	4924											
GUCY2C	2984	broad.mit.edu;bcgsc.ca	37	chr12	14836167	14836167	+	Frame_Shift_Del	DEL	G	G	-													aaacttccagctgagatcatGgggtagctcaattctgtgtc					novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	GUCY2C	NM_004963	exon4	c.420delC	p.P140fs	GATCATGGGGTAG		145	25	0.17	82	0	0		126		1	0	0				-	14836167	G	-	14836167	7	5	70	1	0	1	0	1	0	0	0	0	6936	1335	47	0	2897	0	GUCY2C	12	14836167	Frame_Shift_Del	DEL	G	TCGA-2G-AALR-01A-21D-A42Y-10	6752121	14836167	119015728	58	4925											
ERBB3	2065	mdanderson.org	37	chr12	56495768	56495768	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tacgtagcttagaggctacaGactctgcctttgataaccct	8	11	1	3	rs376777418	alternate_allele	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001982	exon28	c.G3958T	p.D1320Y	GCTACAGACTCTG		38	3	0.08	45	0	0				111	0	0				T	56495768	G	T	56495768	3	4	70	1	0	0	0	0	1	0	0	0	5236	942	33	3	4199	3	ERBB3	12	56495768	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	41659601	56495768	77356127	59	4926											
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	66765536	66765536	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttgtttcatttttctcaGggttactgacttcctaccca	5	11	3	1	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_021150	exon22	c.C2794A	p.L932M	TTCTCAGGGTTAC		74	17	0.23	71	0	0				9	3	0.33				T	66765536	G	T	66765536	3	4	70	1	0	0	0	0	1	0	0	0	6827	991	35	3	448	3	GRIP1	12	66765536	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	10269768	66765536	67086359	60	4927											
SELPLG	6404	bcgsc.ca	37	chr12	109017399	109017399	+	Missense_Mutation	SNP	T	T	G													tgcagtggtctgtgcctccaTggctgtggtttgagtggtct					novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	SELPLG	NM_001206609	exon2	c.A733C	p.M245L	CCTCCATGGCTGT		123	11	0.09	96	0	0		138		10	0	0				G	109017399	T	G	109017399	3	3	70	1	0	0	0	0	1	0	0	0	14073	1464	51	4	557	4	SELPLG	12	109017399	Missense_Mutation	SNP	T	TCGA-2G-AALR-01A-21D-A42Y-10	42251863	109017399	24834496	61	4928	13	2									
SELPLG	6404	bcgsc.ca	37	chr12	109017401	109017401	+	Missense_Mutation	SNP	G	G	C													cagtggtctgtgcctccatgGctgtggtttgagtggtctgt					novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	SELPLG	NM_001206609	exon2	c.C731G	p.A244G	TCCATGGCTGTGG		121	11	0.09	93	0	0		138		10	0	0				C	109017401	G	C	109017401	3	2	70	1	0	0	0	0	1	0	0	0	14073	1203	42	5	559	5	SELPLG	12	109017401	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	2	109017401	24834494	62	4929	13	2									
MPHOSPH8	54737	bcgsc.ca	37	chr13	20208029	20208029	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgcgagaggagcggaggcCtttggcgacagtgaggagga	20	8	0	2	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	MPHOSPH8	NM_017520	exon1	c.C141A	p.A47A	GGAGGCCTTTGGC		67	14	0.21	120	0	0		58		26	0	0				A	20208029	C	A	20208029	2	1	70	1	0	0	0	0	0	0	0	1	9775	668	24	3		3	MPHOSPH8	13	20208029	Silent	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10		20208029	94961849	63	4930											
PABPC3	5042	bcgsc.ca	37	chr13	25671311	25671315	+	Frame_Shift_Del	DEL	TATGA	TATGA	-													acaatcactagtgcaaaggtTatgatggaaggtggtcgcag					novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	TATGA	TATGA					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	PABPC3	NM_030979	exon1	c.975_979del	p.325_327del	AAAGGTTATGATG		122	4	0.03	185	0	0		129		12	0	0				-	25671315	TATGA	-	25671311	7	5	70	1	0	1	0	1	0	0	0	0	11411	1741	61	0	977	0	PABPC3	13	25671311	Frame_Shift_Del	DEL	TATGA	TCGA-2G-AALR-01A-21D-A42Y-10	5463282	25671311	89498567	64	4931											
SMOC1	64093	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	70496970	70496970	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctctcagtaggacgcctcGtctaaggagcagaaaaccca	9	12	3	1	rs192204434	bycluster;by1000genomes;alternate_allele	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	SMOC1	NM_001034852	exon12	c.G1303C	p.V435L	CGCCTCGTCTAAG		197	54	0.27	181	3	0.0165745856		61		169	47	0.28				C	70496970	G	C	70496970	3	2	70	1	0	0	0	0	1	0	0	0	14854	1145	40	5	1349	5	SMOC1	14	70496970	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10		70496970	36852570	65	4932											
UNC13C	440279	mdanderson.org	37	chr15	54307876	54307876	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgagggttatgatggtccaGcagatgatatggttagtgaa	14	3	0	5	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001080534	exon1	c.G2776A	p.A926T	GGTCCAGCAGATG		81	4	0.05	84	0	0				2	0	0				A	54307876	G	A	54307876	3	1	70	1	0	0	0	0	1	0	0	0	17045	971	34	2	2778	2	UNC13C	15	54307876	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10		54307876	48223516	66	4933											
RPLP1	6176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	69747557	69747557	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatctgcaatgtaggggccGgtggacctgctccagcagct	13	12	2	0	rs200917641	alternate_allele	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001003	exon3	c.G196T	p.G66C	GGGGCCGGTGGAC		97	31	0.32	141	0	0				14447	3576	0.25				T	69747557	G	T	69747557	3	4	70	1	0	0	0	0	1	0	0	0	13656	1116	39	1	206	1	RPLP1	15	69747557	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	15439681	69747557	32783835	67	4934											
ATP6V0C	527	mdanderson.org	37	chr16	2569648	2569648	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgtgcggggcaccgcccagCagccccgactattcgtgggc	15	16	0	0	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001694	exon3	c.C370T	p.Q124X	GCCCAGCAGCCCC		34	3	0.09	36	0	0				701	0	0				T	2569648	C	T	2569648	4	4	70	1	0	0	0	0	0	1	0	0	1170	711	25	2	380	2	ATP6V0C	16	2569648	Nonsense_Mutation	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10		2569648	87785105	68	4935											
RABEP2	79874	mdanderson.org	37	chr16	28925602	28925602	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtctgggacgagctggtaGccaggagggggcaggtagat	20	6	1	1	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_024816	exon5	c.C849A	p.G283G	CTGGTAGCCAGGA		37	3	0.08	64	0	0				41	0	0				T	28925602	G	T	28925602	2	4	70	1	0	0	0	0	0	0	0	1	13013	958	34	2		2	RABEP2	16	28925602	Silent	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	26355954	28925602	61429151	69	4936											
SLC38A7	55238	mdanderson.org	37	chr16	58713788	58713788	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgcgatgcctgctgccacGccccccgcagtgctgaaggc	13	16	0	1	rs373479233		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_018231	exon3	c.C243T	p.G81G	TGCCACGCCCCCC		25	3	0.12	32	0	0				28	0	0				A	58713788	G	A	58713788	2	1	70	1	0	0	0	0	0	0	0	1	14663	1074	38	1		1	SLC38A7	16	58713788	Silent	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	29788186	58713788	31640965	70	4937											
SMPD3	55512	mdanderson.org	37	chr16	68398787	68398787	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgaagcaggtccagctgCccacaccggatggcgctgtc	12	15	0	1	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_018667	exon5	c.G1422A	p.G474G	CAGCTGCCCACAC		25	3	0.12	38	0	0				5	0	0				T	68398787	C	T	68398787	2	4	70	1	0	0	0	0	0	0	0	1	14859	726	26	2		2	SMPD3	16	68398787	Silent	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10	9684999	68398787	21955966	71	4938											
SLC38A8	146167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	84075679	84075679	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatgaggatgaagacagcGcccatcgaggacagagtggc	14	9	1	4	rs140582456	alternate_allele	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001080442	exon1	c.C84A	p.G28G	GACAGCGCCCATC		71	24	0.34	55	0	0				2	0	0				T	84075679	G	T	84075679	2	4	70	1	0	0	0	0	0	0	0	1	14664	1074	38	1		1	SLC38A8	16	84075679	Silent	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	15676892	84075679	6279074	72	4939											
TP53I13	90313	mdanderson.org	37	chr17	27899194	27899194	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgctctgcggagctggcGgccccctggcacagaggtga	15	13	1	2	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_138349	exon6	c.G548T	p.R183L	GCTGGCGGCCCCC		36	3	0.08	26	0	0				289	0	0				T	27899194	G	T	27899194	3	4	70	1	0	0	0	0	1	0	0	0	16446	1116	39	1	570	1	TP53I13	17	27899194	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10		27899194	53296016	73	4940											
CCR10	2826	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr17	40831978	40831978	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcgtgcggcccagaagcgCgtagcaggctaccatgacgc	14	14	0	2	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_016602	exon2	c.G682C	p.A228P	GAAGCGCGTAGCA		23	6	0.26	14	0	0				6	1	0.17				G	40831978	C	G	40831978	3	3	70	1	0	0	0	0	1	0	0	0	2962	768	27	5	410	5	CCR10	17	40831978	Missense_Mutation	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10	12932784	40831978	40363232	74	4941											
RUNDC1	146923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	41141537	41141537	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatccgagaccttgagatGtttatcaacttcatccaagg	8	10	2	3	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_173079	exon3	c.G837A	p.M279I	TGAGATGTTTATC		108	30	0.28	75	0	0				24	3	0.13				A	41141537	G	A	41141537	3	1	70	1	0	0	0	0	1	0	0	0	13793	1377	48	3	847	3	RUNDC1	17	41141537	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	309559	41141537	40053673	75	4942											
SDK2	54549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	71387578	71387578	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acgggaagggcaaaggcttaCcaagaatgatgccattgggg	15	7	0	2	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001144952	exon29	c.3997+1G>A	.	GGCTTACCAAGAA		130	18	0.14	98	0	0				0	0					T	71387578	C	T	71387578	5	4	70	1	0	0	0	0	0	0	1	0	14022	521	18	3	2592	3	SDK2	17	71387578	Splice_Site	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10	30246041	71387578	9807632	76	4943											
SLC16A3	9123	mdanderson.org	37	chr17	80195738	80195738	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgctgctgatggaggcGgtggccgtgctcgtcgggcc	19	11	0	1	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001206952	exon4	c.G1092A	p.A364A	GGAGGCGGTGGCC		22	2	0.09	13	0	0				307	1	0				A	80195738	G	A	80195738	2	1	70	1	0	0	0	0	0	0	0	1	14463	1103	39	1		1	SLC16A3	17	80195738	Silent	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	8808160	80195738	999472	77	4944											
SMAD7	4092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr18	46474772	46474772	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	accagttggtttgagaaaatCcatcgggtatctggagtaag	12	6	1	1	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_005904	exon2	c.G649T	p.D217Y	GAAAATCCATCGG		128	11	0.09	149	0	0				64	5	0.08				A	46474772	C	A	46474772	3	1	70	1	0	0	0	0	1	0	0	0	14816	855	30	3	643	3	SMAD7	18	46474772	Missense_Mutation	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10		46474772	31602476	78	4945			1	12		2	2	12	C		3.624349e-05
SMAD7	4092	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	46474783	46474783	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tgagaaaatccatcgggtatCtggagtaaggagggggggga	18	4	1	1	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	SMAD7	NM_005904	exon2	c.G638C	p.R213T	GGGTATCTGGAGT		120	11	0.09	139	2	0.0143884892		22		70	1	0.01				G	46474783	C	G	46474783	3	3	70	1	0	0	0	0	1	0	0	0	14816	913	32	5	654	5	SMAD7	18	46474783	Missense_Mutation	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10	11	46474783	31602465	79	4946			1	12		2	2	12	C		3.624349e-05
AMH	268	ucsc.edu	37	chr19	2249633	2249633	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgagacctggccaccttcgGggtctgcaacaccggtgaca	12	15	1	2	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	AMH	NM_000479	exon1	c.G302T	p.G101V	CCTTCGGGGTCTG		7	2	0.29	15	0	0		12		56	23	0.41				T	2249633	G	T	2249633	3	4	70	1	0	0	0	0	1	0	0	0	568	1232	43	3	304	3	AMH	19	2249633	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10		2249633	56879350	80	4947											
ADAMTS10	81794	mdanderson.org	37	chr19	8649876	8649876	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcactcgtgcgacgcctgGcccgtgtggctggtgcagcg	17	13	0	0	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_030957	exon25	c.C3105A	p.G1035G	CGCCTGGCCCGTG		30	3	0.1	19	0	0				27	0	0				T	8649876	G	T	8649876	2	4	70	1	0	0	0	0	0	0	0	1	255	1190	42	2		2	ADAMTS10	19	8649876	Silent	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	6400243	8649876	50479107	81	4948											
PGLYRP2	114770	mdanderson.org	37	chr19	15582890	15582890	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgccgctccccagcggcagCgggggtggatggccgggcat	19	14	0	0	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_052890	exon3	c.G1154A	p.R385H	CGGCAGCGGGGGT		11	2	0.18	20	0	0				5	0	0				T	15582890	C	T	15582890	3	4	70	1	0	0	0	0	1	0	0	0	11841	768	27	1	588	1	PGLYRP2	19	15582890	Missense_Mutation	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10	6933014	15582890	43546093	82	4949											
ANKLE1	126549	broad.mit.edu	37	chr19	17397498	17397501	+	Frame_Shift_Del	DEL	TGTT	TGTT	-													tgtgtgtgtgtgtgtgtgtgTgtttgtgtgtgtgtgtgtgt					rs35771129	alternate_allele	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	TGTT	TGTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	ANKLE1	.	.	.	.	TGTGTGTGTTTGT		11	8	0.73	11	0	0		27		22	0	0				-	17397501	TGTT	-	17397498	7	5	70	1	0	1	0	1	0	0	0	0	628	1711	59	0		0	ANKLE1	19	17397498	Frame_Shift_Del	DEL	TGTT	TCGA-2G-AALR-01A-21D-A42Y-10	1814608	17397498	41731485	83	4950											
SLC27A1	376497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	17598309	17598309	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acgtcggggaccaccgggctGcccaaggctgccattgtcgt	14	14	0	0	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_198580	exon4	c.G765C	p.L255L	CGGGCTGCCCAAG		31	11	0.35	50	0	0				54	24	0.44				C	17598309	G	C	17598309	2	2	70	1	0	0	0	0	0	0	0	1	14579	1306	46	5		5	SLC27A1	19	17598309	Silent	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	200811	17598309	41530674	84	4951											
FCHO1	23149	mdanderson.org	37	chr19	17889000	17889000	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccaagaacctctttgggccGcccctggagtcagcctttga	10	14	2	2	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001161358	exon18	c.G1314A	p.P438P	TGGGCCGCCCCTG		40	3	0.08	27	0	0				5	0	0				A	17889000	G	A	17889000	2	1	70	1	0	0	0	0	0	0	0	1	5819	1074	38	1		1	FCHO1	19	17889000	Silent	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	290691	17889000	41239983	85	4952											
RASGRP4	115727	mdanderson.org	37	chr19	38905583	38905583	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcaggtagaggttgttcaGcttgggtaggtgcaggcggc	18	8	1	1	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_170604	exon9	c.C1135A	p.L379M	TGTTCAGCTTGGG		72	4	0.06	78	0	0				4	0	0				T	38905583	G	T	38905583	3	4	70	1	0	0	0	0	1	0	0	0	13128	962	34	2	922	2	RASGRP4	19	38905583	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	21016583	38905583	20223400	86	4953											
SPTBN4	57731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	41072264	41072264	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctctgcggcgcctgaccaCggtcagctccccagatactg	10	17	2	2	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_020971	exon30	c.C6335T	p.T2112M	TGACCACGGTCAG		25	4	0.16	36	0	0				0	0					T	41072264	C	T	41072264	3	4	70	1	0	0	0	0	1	0	0	0	15176	550	19	1	6543	1	SPTBN4	19	41072264	Missense_Mutation	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10	2166681	41072264	18056719	87	4954											
RSPH6A	81492	mdanderson.org	37	chr19	46299149	46299149	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agtcatctgtctcctcgcccTcctcctcctcctcgccctcc	4	23	3	0	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_030785	exon6	c.A2132G	p.E711G	TCGCCCTCCTCCT		29	2	0.07	33	0	0				1	0	0				C	46299149	T	C	46299149	3	2	70	1	0	0	0	0	1	0	0	0	13758	1551	54	4	25	4	RSPH6A	19	46299149	Missense_Mutation	SNP	T	TCGA-2G-AALR-01A-21D-A42Y-10	5226885	46299149	12829834	88	4955											
RCN3	57333	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	50045926	50045926	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacctggatgggagtgagGtgggccactgggtgctgccc	19	10	0	1	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	RCN3	NM_020650	exon6	c.G796T	p.V266L	AGTGAGGTGGGCC		72	8	0.11	83	0	0		28		55	7	0.13				T	50045926	G	T	50045926	3	4	70	1	0	0	0	0	1	0	0	0	13232	1261	44	3	814	3	RCN3	19	50045926	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	3746777	50045926	9083057	89	4956											
PTPRH	5794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	55698956	55698956	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catctgagactggctgtggcCcaccagggagagttgctggg	16	10	1	2	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_002842	exon14	c.G2491A	p.G831S	TGTGGCCCACCAG		112	44	0.39	116	0	0				5	3	0.6				T	55698956	C	T	55698956	3	4	70	1	0	0	0	0	1	0	0	0	12854	623	22	3	884	3	PTPRH	19	55698956	Missense_Mutation	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10	5653030	55698956	3430027	90	4957											
SLC23A2	9962	broad.mit.edu;mdanderson.org	37	chr20	4843482	4843482	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagggacgcaaagagggcGctgaacttcccgatcatgcc	14	11	1	2	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	SLC23A2	NM_203327	exon14	c.C1428A	p.S476R	GAGGGCGCTGAAC		35	3	0.09	64	0	0		62		15	0	0				T	4843482	G	T	4843482	3	4	70	1	0	0	0	0	1	0	0	0	14517	1078	38	1	540	1	SLC23A2	20	4843482	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10		4843482	58182038	91	4958											
KIAA1755	85449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	36841586	36841586	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gccggaagaaggtggtggcaAgcaaatgctcgcgggcaggg	19	8	0	1	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001029864	exon14	c.T3461G	p.L1154R	GTGGCAAGCAAAT		37	17	0.46	32	0	0				31	15	0.48				C	36841586	A	C	36841586	3	2	70	1	0	0	0	0	1	0	0	0	8298	72	3	4	145	4	KIAA1755	20	36841586	Missense_Mutation	SNP	A	TCGA-2G-AALR-01A-21D-A42Y-10	31998104	36841586	26183934	92	4959											
SEMG1	6406	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr20	43836447	43836447	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agaaaggctgtgggttcatgGactaagtaaagaacaaactt	11	5	1	2	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_003007	exon2	c.G509A	p.G170E	TTCATGGACTAAG		89	6	0.07	119	0	0				0	0					A	43836447	G	A	43836447	3	1	70	1	0	0	0	0	1	0	0	0	14097	1174	41	3	515	3	SEMG1	20	43836447	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	6994861	43836447	19189073	93	4960											
INPP5J	27124	mdanderson.org	37	chr22	31522467	31522467	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	agcgacggcgcagacatgatCgccatagggtgaggtggcag	17	9	0	3	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001002837	exon3	c.C273T	p.I91I	CATGATCGCCATA		45	3	0.07	40	0	0				8	0	0				T	31522467	C	T	31522467	2	4	70	1	0	0	0	0	0	0	0	1	7802	874	31	1		1	INPP5J	22	31522467	Silent	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10		31522467	19782099	94	4961											
NCF4	4689	ucsc.edu	37	chr22	37261054	37261054	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ctttgcagagcaagctggagGagcgcttcgggccagacagc	15	11	0	2	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	NCF4	NM_000631	exon3	c.G211T	p.E71X	CTGGAGGAGCGCT		39	4	0.1	58	0	0		66		30	0	0				T	37261054	G	T	37261054	4	4	70	1	0	0	0	0	0	1	0	0	10264	1175	41	3	221	3	NCF4	22	37261054	Nonsense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	5738587	37261054	14043512	95	4962											
SUN2	25777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	39148563	39148563	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gactcccagccaccgagctcCctccgctgctgctgctgccg	10	20	0	0	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001199580	exon3	c.G71A	p.G24E	GAGCTCCCTCCGC		37	16	0.43	40	0	0				86	25	0.29				T	39148563	C	T	39148563	3	4	70	1	0	0	0	0	1	0	0	0	15447	623	22	3	2150	3	SUN2	22	39148563	Missense_Mutation	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10	1887509	39148563	12156003	96	4963											
TTLL12	23170	ucsc.edu	37	chr22	43579063	43579063	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agctcgttccccgggttgggCtgctgcttccgcacctcccg	12	17	0	0	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	TTLL12	NM_015140	exon2	c.G270A	p.Q90Q	GTTGGGCTGCTGC		91	5	0.05	102	0	0		50		91	10	0.11				T	43579063	C	T	43579063	2	4	70	1	0	0	0	0	0	0	0	1	16786	796	28	2		2	TTLL12	22	43579063	Silent	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10	4430500	43579063	7725503	97	4964											
NUDT10	170685	mdanderson.org	37	chrX	51075901	51075901	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgtgcttccggagcgaGcgcgaggacgaggtcctgtt	16	11	0	0	rs2801627	bycluster	TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_153183	exon2	c.G84A	p.E28E	GAGCGAGCGCGAG		264	20	0.08	194	3	0.0154639175				26	0	0				A	51075901	G	A	51075901	2	1	70	1	0	0	0	0	0	0	0	1	10773	962	34	2		2	NUDT10	23	51075901	Silent	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10		51075901	104194659	98	4965											
SATL1	340562	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	84349179	84349179	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcctctaggtaaagtacctTgccagtccatgagtcgtatg	10	10	1	1	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001012980	exon4	c.A1831C	p.K611Q	GTACCTTGCCAGT		324	21	0.06	219	0	0				0	0					G	84349179	T	G	84349179	3	3	70	1	0	0	0	0	1	0	0	0	13907	1821	63	4	75	4	SATL1	23	84349179	Missense_Mutation	SNP	T	TCGA-2G-AALR-01A-21D-A42Y-10	33273278	84349179	70921381	99	4966											
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	123184103	123184103	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tttggatgaagatgtatagtGatgcctttcttaatgacagt	10	4	1	4	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001042749	exon11	c.G961T	p.D321Y	TATAGTGATGCCT		57	18	0.32	38	0	0				19	6	0.32				T	123184103	G	T	123184103	3	4	70	1	0	0	0	0	1	0	0	0	15298	1290	45	3	995	3	STAG2	23	123184103	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	38834924	123184103	32086457	100	4967											
ARHGEF6	9459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	135763031	135763031	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	accacaattctctccactgtGttacctacatcccccaatta	2	16	1	0	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_004840	exon15	c.C1563G	p.N521K	CACTGTGTTACCT		113	16	0.14	75	0	0				5	0	0				C	135763031	G	C	135763031	3	2	70	1	0	0	0	0	1	0	0	0	907	1368	48	5	799	5	ARHGEF6	23	135763031	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	12578928	135763031	19507529	101	4968											
ZNF185	7739	hgsc.bcm.edu;mdanderson.org	37	chrX	152110348	152110348	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgaggatcacgaatgggccCgaggagctggctgccccttc	14	14	1	0	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001178115	exon1	c.C96A	p.P32P	TGGGCCCGAGGAG		58	5	0.09	28	0	0				0	0					A	152110348	C	A	152110348	2	1	70	1	0	0	0	0	0	0	0	1	17809	639	23	1		1	ZNF185	23	152110348	Silent	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10	16347317	152110348	3160212	102	4969											
ZNF275	10838	mdanderson.org	37	chrX	152612977	152612977	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtccttccgaggggtcaaCgggctggccgagcaccagcg	15	13	1	0	rs372792162		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_001080485	exon4	c.C834T	p.N278N	GGTCAACGGGCTG		42	3	0.07	20	0	0				8	0	0				T	152612977	C	T	152612977	2	4	70	1	0	0	0	0	0	0	0	1	17867	535	19	1		1	ZNF275	23	152612977	Silent	SNP	C	TCGA-2G-AALR-01A-21D-A42Y-10	502629	152612977	2657583	103	4970											
ABCD1	215	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	153001577	153001577	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gctttgcagatgcagaggccGtgaagaaggcagccttggaa	15	8	0	4	novel		TCGA-2G-AALR-01A-21D-A42Y-10	TCGA-2G-AALR-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e341fe71-7bdf-465a-8db7-644efb9ea2f6	5e1c1269-3ba2-4319-ab56-c708c5bb0939	.	.	NM_000033	exon3	c.G1093C	p.V365L	GAGGCCGTGAAGA		150	16	0.11	67	0	0				62	4	0.06				C	153001577	G	C	153001577	3	2	70	1	0	0	0	0	1	0	0	0	60	1145	40	5	1103	5	ABCD1	23	153001577	Missense_Mutation	SNP	G	TCGA-2G-AALR-01A-21D-A42Y-10	388600	153001577	2268983	104	4971											
NBPF3	84224	broad.mit.edu	37	chr1	21807432	21807432	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atttattgcaggaatgaaaaAggaccaagaagaggaagaag	12	3	0	4	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	NBPF3	NM_032264	exon12	c.C1391G	p.P464R	TGAAAAAGGACCA		258	4	0.02	239	0	0		55		1	0	0				G	21807432	A	G	21807432	3	3	71	1	0	0	0	0	1	0	0	0	10244	72	3	4	1433	4	NBPF3	1	21807432	Missense_Mutation	SNP	A	TCGA-2G-AALS-01A-12D-A42Y-10		21807432	227443189	1	4972											
GJA9	81025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	39340498	39340498	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctgtagaggaaccccatgTagctctaagccaccgcggtt	10	12	2	1	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_030772	exon2	c.A1273G	p.T425A	CCCATGTAGCTCT		238	33	0.14	193	0	0				0	0					C	39340498	T	C	39340498	3	2	71	1	0	0	0	0	1	0	0	0	6447	1638	57	4	278	4	GJA9	1	39340498	Missense_Mutation	SNP	T	TCGA-2G-AALS-01A-12D-A42Y-10	17533066	39340498	209910123	2	4973											
FUBP1	8880	broad.mit.edu	37	chr1	78430879	78430879	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aagccaggagctggtcttccTttttcaacaatctggtccag	9	11	3	0	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	FUBP1	NM_003902	exon8	c.A510G	p.K170K	TCTTCCTTTTTCA		101	3	0.03	102	0	0		112		76	0	0				C	78430879	T	C	78430879	2	2	71	1	0	0	0	0	0	0	0	1	6126	1606	56	4		4	FUBP1	1	78430879	Silent	SNP	T	TCGA-2G-AALS-01A-12D-A42Y-10	39090381	78430879	170819742	3	4974											
SEC22B	9554	broad.mit.edu	37	chr1	145109284	145109292	+	RNA	DEL	AAAAAAAAA	AAAAAAAAA	-													gcagagcgagactccgtctcAaaaaaaaagaaaaaaaaaaa					rs34197869		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	AAAAAAAAA	AAAAAAAAA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	.	.	.	.	CGTCTCAAAAAAA		6	2	0.33	4	0	0				0	0					-	145109292	AAAAAAAAA	-	145109284	6	5	71	0	1	1	0	1	0	0	0	0	14042	145	5	0		0	SEC22B	1	145109284	RNA	DEL	AAAAAAAAA	TCGA-2G-AALS-01A-12D-A42Y-10	66678405	145109284	104141337	4	4975											
VPS72	6944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	151156791	151156791	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttctgaaaccacagacttAcccagtgaccgtaaattaag	6	10	1	3	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_005997	exon5	c.562+2T>A	.	AGACTTACCCAGT		93	11	0.12	83	0	0				4	4	1				T	151156791	A	T	151156791	5	4	71	1	0	0	0	0	0	0	1	0	17276	405	14	5	542	5	VPS72	1	151156791	Splice_Site	SNP	A	TCGA-2G-AALS-01A-12D-A42Y-10	6047507	151156791	98093830	5	4976											
TTC24	164118	hgsc.bcm.edu;mdanderson.org	37	chr1	156551835	156551835	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agaaaagccggaggcttgccGagaggagcactgagaggcga	17	8	0	3	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_001105669	exon2	c.G679T	p.E227X	CTTGCCGAGAGGA		69	4	0.06	49	0	0				0	0					T	156551835	G	T	156551835	4	4	71	1	0	0	0	0	0	1	0	0	16753	1059	37	1	681	1	TTC24	1	156551835	Nonsense_Mutation	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10	5395044	156551835	92698786	6	4977											
MRPS14	63931	mdanderson.org	37	chr1	174983908	174983908	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gcttcacaccacgcggacggGacgtcataacacaccgattt	9	14	2	0	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_022100	exon3	c.C284A	p.S95Y	GGACGGGACGTCA		100	6	0.06	93	0	0				75	0	0				T	174983908	G	T	174983908	3	4	71	1	0	0	0	0	1	0	0	0	9872	1174	41	3	106	3	MRPS14	1	174983908	Missense_Mutation	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10	18432073	174983908	74266713	7	4978											
OBSL1	23363	mdanderson.org	37	chr2	220430187	220430187	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	accacccgctctgaggttgtGaaggtcaacgacaccctgtc	10	14	2	2	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_001173431	exon6	c.C2184A	p.F728L	GGTTGTGAAGGTC		39	3	0.08	35	0	0				108	0	0				T	220430187	G	T	220430187	3	4	71	1	0	0	0	0	1	0	0	0	10860	1281	45	3	3722	3	OBSL1	2	220430187	Missense_Mutation	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10		220430187	22769186	8	4979											
GPC1	2817	mdanderson.org	37	chr2	241401916	241401916	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccgagagagctgcgcctgCgggccacccgtgccttcgtg	14	17	0	1	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_002081	exon3	c.C634T	p.R212W	CGCCTGCGGGCCA		23	2	0.09	15	0	0				31	0	0				T	241401916	C	T	241401916	3	4	71	1	0	0	0	0	1	0	0	0	6636	759	27	1	644	1	GPC1	2	241401916	Missense_Mutation	SNP	C	TCGA-2G-AALS-01A-12D-A42Y-10	20971729	241401916	1797457	9	4980											
CHST2	9435	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr3	142840933	142840933	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cactacctggtggtgcggtaCgaggacctggtgggagaccc	16	11	0	1	rs140050898	bycluster;byfrequency;alternate_allele	TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	CHST2,NS,carcinoma,0,1	CHST2	NM_004267	exon2	c.C1275G	p.Y425X	GCGGTACGAGGAC		89	4	0.04	72	0	0		0	1	166	1	0.01				G	142840933	C	G	142840933	4	3	71	1	0	0	0	0	0	1	0	0	3426	547	19	5	1277	5	CHST2	3	142840933	Nonsense_Mutation	SNP	C	TCGA-2G-AALS-01A-12D-A42Y-10		142840933	55181497	10	4981											
FGFRL1	53834	broad.mit.edu	37	chr4	1017489	1017489	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcctctgggggtcaagaggAccccgccagccagcagtggg	15	14	2	1	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	FGFRL1	NM_001004356	exon4	c.A413C	p.D138A	AAGAGGACCCCGC		72	20	0.28	58	12	0.2068965517		77		13	0	0				C	1017489	A	C	1017489	3	2	71	1	0	0	0	0	1	0	0	0	5901	275	10	4	423	4	FGFRL1	4	1017489	Missense_Mutation	SNP	A	TCGA-2G-AALS-01A-12D-A42Y-10		1017489	190136787	11	4982											
PTK7	5754	mdanderson.org	37	chr6	43126631	43126631	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcataaggacttggctgCgcgtaactgcctggtcagtg	14	9	1	0	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	PTK7,colon,carcinoma,0,4	PTK7	NM_001270398	exon18	c.C2822T	p.A941V	TGGCTGCGCGTAA		45	3	0.07	52	0	0		0	4	150	1	0.01				T	43126631	C	T	43126631	3	4	71	1	0	0	0	0	1	0	0	0	12814	768	27	1	2868	1	PTK7	6	43126631	Missense_Mutation	SNP	C	TCGA-2G-AALS-01A-12D-A42Y-10		43126631	127988436	12	4983											
ECT2L	345930	mdanderson.org	37	chr6	139210141	139210141	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtagcccaacttcattgctGtgatgaagaaataagtttct	8	7	2	3	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_001195037	exon19	c.G2387T	p.C796F	ATTGCTGTGATGA		49	3	0.06	48	0	0				0	0					T	139210141	G	T	139210141	3	4	71	1	0	0	0	0	1	0	0	0	4928	1377	48	3	2457	3	ECT2L	6	139210141	Missense_Mutation	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10	96083510	139210141	31904926	13	4984											
SYNE1	23345	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr6	152589280	152589280	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cgaaggagactcttctgctcGgctaattcctgttctaactc	8	12	3	1	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_182961	exon100	c.C18726G	p.A6242A	CTGCTCGGCTAAT		111	6	0.05	88	0	0				1	0	0				C	152589280	G	C	152589280	2	2	71	1	0	0	0	0	0	0	0	1	15501	1103	39	5		5	SYNE1	6	152589280	Silent	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10	13379139	152589280	18525787	14	4985											
LRWD1	222229	mdanderson.org	37	chr7	102108606	102108606	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcggcccaggtggagggcaGccctgtggcaggctccgatg	18	12	0	0	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_152892	exon6	c.G776A	p.S259N	AGGGCAGCCCTGT		41	3	0.07	28	0	0				57	0	0				A	102108606	G	A	102108606	3	1	71	1	0	0	0	0	1	0	0	0	9091	971	34	2	798	2	LRWD1	7	102108606	Missense_Mutation	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10		102108606	57030057	15	4986											
NRCAM	4897	bcgsc.ca;mdanderson.org	37	chr7	107815786	107815786	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttgcctgcacctacatcAggtggaagaataccagcttt	8	12	1	1	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	NRCAM	NM_001037132	exon25	c.T3168C	p.P1056P	TACATCAGGTGGA		71	5	0.07	56	0	0		267		0	0					G	107815786	A	G	107815786	2	3	71	1	0	0	0	0	0	0	0	1	10691	175	7	4		4	NRCAM	7	107815786	Silent	SNP	A	TCGA-2G-AALS-01A-12D-A42Y-10	5707180	107815786	51322877	16	4987											
WASL	8976	mdanderson.org	37	chr7	123332847	123332847	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tcttcccctagcaggaggagGaggaggacctgagttgtgtg	16	8	1	1	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	WASL,bladder,carcinoma,0,1	WASL	NM_003941	exon9	c.C901A	p.P301T	GAGGAGGAGGAGG		45	3	0.07	42	0	0		0	1	56	0	0				T	123332847	G	T	123332847	3	4	71	1	0	0	0	0	1	0	0	0	17315	1174	41	3	628	3	WASL	7	123332847	Missense_Mutation	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10	15517061	123332847	35805816	17	4988											
PRKDC	5591	mdanderson.org	37	chr8	48711905	48711905	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcctcagccgcctgcacaGcctcagagaggtgctggaat	11	15	2	1	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	.	.	.	.	TGCACAGCCTCAG		44	3	0.07	28	0	0				56	0	0				T	48711905	G	T	48711905	3	4	71	1	0	0	0	0	1	0	0	0	12572	971	34	2	2283	2	PRKDC	8	48711905	Missense_Mutation	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10		48711905	97652117	18	4989											
TOX	9760	broad.mit.edu	37	chr8	59728032	59728032	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgggctgatctggaggggAggaggaggggacacagccat	21	7	1	1	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	TOX	NM_014729	exon7	c.T1257C	p.P419P	GAGGGGAGGAGGA		118	23	0.19	94	18	0.1914893617		83		19	1	0.05				G	59728032	A	G	59728032	2	3	71	1	0	0	0	0	0	0	0	1	16437	291	11	4		4	TOX	8	59728032	Silent	SNP	A	TCGA-2G-AALS-01A-12D-A42Y-10	11016127	59728032	86635990	19	4990											
STAU2	27067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	74464275	74464275	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgaatccttgctaaatatTccagttgttttgaaggttgt	8	6	0	2	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_001164380	exon13	c.A1502C	p.E501A	AAATATTCCAGTT		136	19	0.14	142	0	0				19	4	0.21				G	74464275	T	G	74464275	3	3	71	1	0	0	0	0	1	0	0	0	15328	1783	62	4	346	4	STAU2	8	74464275	Missense_Mutation	SNP	T	TCGA-2G-AALS-01A-12D-A42Y-10	14736243	74464275	71899747	20	4991											
PLEC	5339	mdanderson.org	37	chr8	144993788	144993788	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcgctggttccgcacggGgtccaccaggaagccagtgg	16	13	0	0	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_201380	exon32	c.C10612A	p.P3538T	GCACGGGGTCCAC		25	3	0.12	27	0	0				66	0	0				T	144993788	G	T	144993788	3	4	71	1	0	0	0	0	1	0	0	0	12099	1232	43	3	3446	3	PLEC	8	144993788	Missense_Mutation	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10	70529513	144993788	1370234	21	4992											
NOTCH1	4851	mdanderson.org	37	chr9	139405668	139405668	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggattgcctgcactccccGccgtttctgcaggggctggg	14	14	1	0	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_017617	exon16	c.C2523T	p.G841G	CTCCCCGCCGTTT		52	3	0.06	55	0	0				16	0	0				A	139405668	G	A	139405668	2	1	71	1	0	0	0	0	0	0	0	1	10593	1074	38	1		1	NOTCH1	9	139405668	Silent	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10		139405668	1807763	22	4993											
ENTPD2	954	mdanderson.org	37	chr9	139943414	139943414	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttctggaagatcacgccGccgaaggcgcgctcgtcgaa	12	13	3	1	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_203468	exon8	c.C1263A	p.G421G	CACGCCGCCGAAG		13	3	0.23	12	0	0				0	0					T	139943414	G	T	139943414	2	4	71	1	0	0	0	0	0	0	0	1	5167	1074	38	1		1	ENTPD2	9	139943414	Silent	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10	537746	139943414	1270017	23	4994											
C10orf114	399726	mdanderson.org	37	chr10	21784579	21784579	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatccgcggaagaagtcctGgatgagaggtagggtgaagg	18	6	0	3	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_001010911	exon2	c.C361A	p.Q121K	AGTCCTGGATGAG		49	3	0.06	47	0	0				4	0	0				T	21784579	G	T	21784579	3	4	71	1	0	0	0	0	1	0	0	0	1589	1357	47	3	53	3	C10orf114	10	21784579	Missense_Mutation	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10		21784579	113750168	24	4995											
ZRANB1	54764	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	126673488	126673488	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatggtagaaaaatggcttgAccgctaccgacagatccggc	12	10	0	3	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_017580	exon9	c.A2054G	p.D685G	GGCTTGACCGCTA		99	5	0.05	84	0	0				55	0	0				G	126673488	A	G	126673488	3	3	71	1	0	0	0	0	1	0	0	0	18263	275	10	4	2088	4	ZRANB1	10	126673488	Missense_Mutation	SNP	A	TCGA-2G-AALS-01A-12D-A42Y-10	104888909	126673488	8861259	25	4996											
DNHD1	144132	mdanderson.org	37	chr11	6592605	6592605	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaggctcggtctccagtcaGctccagtataaacgtctgga	11	12	3	0	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_144666	exon42	c.G13863T	p.Q4621H	CAGTCAGCTCCAG		36	3	0.08	41	0	0				7	0	0				T	6592605	G	T	6592605	3	4	71	1	0	0	0	0	1	0	0	0	4695	962	34	2	14030	2	DNHD1	11	6592605	Missense_Mutation	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10		6592605	128413911	26	4997											
C11orf58	10944	mdanderson.org	37	chr11	16760382	16760382	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcgttcagcctccccagaCgacgatgtaaataataatgg	9	10	1	1	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_014267	exon1	c.C57T	p.D19D	CCCAGACGACGAT		39	3	0.08	44	0	0				271	0	0				T	16760382	C	T	16760382	2	4	71	1	0	0	0	0	0	0	0	1	1656	535	19	1		1	C11orf58	11	16760382	Silent	SNP	C	TCGA-2G-AALS-01A-12D-A42Y-10	10167777	16760382	118246134	27	4998											
ABCC8	6833	mdanderson.org	37	chr11	17450161	17450161	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgtgggctcatgggggGcacactgctcctcacggatc	16	11	2	0	rs148709148	bycluster;byfrequency;by1000genomes	TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_000352	exon13	c.C1874T	p.A625V	TGGGGGGCACACT		43	3	0.07	41	0	0	0.001			1	0	0				A	17450161	G	A	17450161	3	1	71	1	0	0	0	0	1	0	0	0	58	1203	42	2	2979	2	ABCC8	11	17450161	Missense_Mutation	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10	689779	17450161	117556355	28	4999											
ZDHHC13	54503	mdanderson.org	37	chr11	19174229	19174229	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaggtggctgcagaaatgcGaggtattttcatatggggtc	16	5	1	1	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_019028	exon8	c.G871T	p.E291X	AAATGCGAGGTAT		46	3	0.07	71	0	0				19	0	0				T	19174229	G	T	19174229	4	4	71	1	0	0	0	0	0	1	0	0	17660	1059	37	1	901	1	ZDHHC13	11	19174229	Nonsense_Mutation	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10	1724068	19174229	115832287	29	5000											
FOLH1	2346	bcgsc.ca	37	chr11	49204790	49204790	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaattccacgcctataagcAtattctgaaaaaaaaaattg	5	8	1	1	rs76509850	bycluster;byfrequency	TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	FOLH1	NM_004476	exon7	c.T831C	p.Y277Y	ATAAGCATATTCT		173	9	0.05	131	1	0.0076335878		141		0	0					G	49204790	A	G	49204790	2	3	71	1	0	0	0	0	0	0	0	1	6011	224	8	4		4	FOLH1	11	49204790	Silent	SNP	A	TCGA-2G-AALS-01A-12D-A42Y-10	30030561	49204790	85801726	30	5001											
KLC2	64837	broad.mit.edu;ucsc.edu	37	chr11	66033608	66033608	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	agcggttcctttgggaaactCcgggatgccctgaggcgcag	15	11	0	1	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	KLC2	NM_022822	exon14	c.C1647A	p.L549L	GAAACTCCGGGAT		120	19	0.16	109	3	0.0275229358		50		43	13	0.3				A	66033608	C	A	66033608	2	1	71	1	0	0	0	0	0	0	0	1	8376	842	30	3		3	KLC2	11	66033608	Silent	SNP	C	TCGA-2G-AALS-01A-12D-A42Y-10	16828818	66033608	68972908	31	5002											
ACY3	91703	mdanderson.org	37	chr11	67414472	67414472	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcgtgcccccagtcacagCcacgcgacgcaggggctccc	12	18	1	0	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_080658	exon3	c.G43A	p.A15T	TCACAGCCACGCG		42	3	0.07	48	0	0				0	0					T	67414472	C	T	67414472	3	4	71	1	0	0	0	0	1	0	0	0	226	739	26	2	940	2	ACY3	11	67414472	Missense_Mutation	SNP	C	TCGA-2G-AALS-01A-12D-A42Y-10	1380864	67414472	67592044	32	5003											
PIK3C2G	5288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	18573943	18573943	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcttgaatgatgaactacTggaatatctcccacagctag	7	11	2	3	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_004570	exon16	c.T2261C	p.L754P	AACTACTGGAATA		127	12	0.09	89	0	0				0	0					C	18573943	T	C	18573943	3	2	71	1	0	0	0	0	1	0	0	0	11958	1580	55	4	2319	4	PIK3C2G	12	18573943	Missense_Mutation	SNP	T	TCGA-2G-AALS-01A-12D-A42Y-10		18573943	115277952	33	5004											
SP1	6667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	53776737	53776737	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctactactaccaccagcaacAtgggaattatgaactttact	5	11	0	1	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_138473	exon3	c.A1006C	p.M336L	AGCAACATGGGAA		132	17	0.13	106	0	0				11	1	0.09				C	53776737	A	C	53776737	3	2	71	1	0	0	0	0	1	0	0	0	15012	217	8	4	1016	4	SP1	12	53776737	Missense_Mutation	SNP	A	TCGA-2G-AALS-01A-12D-A42Y-10	35202794	53776737	80075158	34	5005											
TIMELESS	8914	mdanderson.org	37	chr12	56814371	56814371	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgcccagaggcagggggCcgaacccctagcttgcgcaa	13	15	0	1	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_003920	exon26	c.G3210A	p.R1070R	AGGGGGCCGAACC		73	4	0.05	52	0	0				68	0	0				T	56814371	C	T	56814371	2	4	71	1	0	0	0	0	0	0	0	1	15963	726	26	2		2	TIMELESS	12	56814371	Silent	SNP	C	TCGA-2G-AALS-01A-12D-A42Y-10	3037634	56814371	77037524	35	5006											
TIMELESS	8914	hgsc.bcm.edu;broad.mit.edu	37	chr12	56817448	56817448	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcttcctcctcctcctcCtcttcttcttcctctgcccc	1	23	5	0	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	TIMELESS,NS,carcinoma,0,1	TIMELESS	NM_003920	exon17	c.G2010A	p.E670E	CTCCTCCTCTTCT		90	4	0.04	45	1	0.0222222222		0	1	40	0	0				T	56817448	C	T	56817448	2	4	71	1	0	0	0	0	0	0	0	1	15963	680	24	3		3	TIMELESS	12	56817448	Silent	SNP	C	TCGA-2G-AALS-01A-12D-A42Y-10	3077	56817448	77034447	36	5007											
TCTN1	79600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	111052124	111052124	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggcagccctggccaccttcgGaactttcccgtcgaccaggc	11	17	0	0	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_024549	exon1	c.G137A	p.G46E	CCTTCGGAACTTT		129	16	0.12	85	0	0				15	3	0.2				A	111052124	G	A	111052124	3	1	71	1	0	0	0	0	1	0	0	0	15780	1174	41	3	139	3	TCTN1	12	111052124	Missense_Mutation	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10	54234676	111052124	22799771	37	5008											
P2RX2	22953	mdanderson.org	37	chr12	133195575	133195575	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catcctgctctacttcgtgtGgtgcgcggggcgcggggtgc	17	12	1	0	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_170683	exon1	c.G173T	p.W58L	TCGTGTGGTGCGC		29	3	0.1	39	0	0				0	0					T	133195575	G	T	133195575	3	4	71	1	0	0	0	0	1	0	0	0	11386	1362	47	3	175	3	P2RX2	12	133195575	Missense_Mutation	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10	22143451	133195575	656320	38	5009											
MYCBP2	23077	mdanderson.org	37	chr13	77900715	77900715	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccggcctgacagcagcaGctggtagtgaccccgggagt	16	13	0	2	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_015057	exon1	c.C196A	p.L66M	GCAGCAGCTGGTA		35	3	0.09	43	0	0				0	0					T	77900715	G	T	77900715	3	4	71	1	0	0	0	0	1	0	0	0	10065	962	34	2	14172	2	MYCBP2	13	77900715	Missense_Mutation	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10		77900715	37269163	39	5010											
PCCA	5095	mdanderson.org	37	chr13	100741384	100741384	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cggggacaacaatggcggggTtctgggtcgggacagcaccg	18	10	1	0	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_001178004	exon1	c.T10G	p.F4V	GCGGGGTTCTGGG		86	19	0.22	79	8	0.1012658228				2	0	0				G	100741384	T	G	100741384	3	3	71	1	0	0	0	0	1	0	0	0	11550	1725	60	4	12	4	PCCA	13	100741384	Missense_Mutation	SNP	T	TCGA-2G-AALS-01A-12D-A42Y-10	22840669	100741384	14428494	40	5011											
EFS	0	broad.mit.edu	37	chr14	23828820	23828820	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agccggggcctgtgtgggggTggggggcttctggccagaag	22	8	1	1	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	EFS	NM_005864	exon4	c.A867C	p.P289P	TGGGGGTGGGGGG		38	7	0.18	20	6	0.3		37		6	1	0.17				G	23828820	T	G	23828820	2	3	71	1	0	0	0	0	0	0	0	1	4985	1683	59	4		4	EFS	14	23828820	Silent	SNP	T	TCGA-2G-AALS-01A-12D-A42Y-10		23828820	83520720	41	5012											
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	23893198	23893198	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcccttttgagctctgagCactcatcttccagcttgcgc	8	14	3	2	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_000257	exon23	c.G2840A	p.C947Y	TCTGAGCACTCAT		81	12	0.15	101	0	0				0	0					T	23893198	C	T	23893198	3	4	71	1	0	0	0	0	1	0	0	0	10086	710	25	2	3039	2	MYH7	14	23893198	Missense_Mutation	SNP	C	TCGA-2G-AALS-01A-12D-A42Y-10	64378	23893198	83456342	42	5013											
HIF1A	3091	mdanderson.org	37	chr14	62207590	62207590	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttccgcaagccctgaaagcGcaagtcctcaaagcacagtt	9	13	1	1	rs199775054	by1000genomes;alternate_allele	TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_001243084	exon12	c.G1849A	p.A617T	GAAAGCGCAAGTC		137	5	0.04	129	0	0				129	0	0				A	62207590	G	A	62207590	3	1	71	1	0	0	0	0	1	0	0	0	7143	1087	38	1	1823	1	HIF1A	14	62207590	Missense_Mutation	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10	38314392	62207590	45141950	43	5014											
MESP2	145873	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr15	90319955	90319955	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gccagagcctgaccaagatcGagacgctgcgcctggccatc	12	15	0	4	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	MESP2	NM_001039958	exon1	c.G367A	p.E123K	AAGATCGAGACGC		26	4	0.15	29	0	0		20		1	0	0				A	90319955	G	A	90319955	3	1	71	1	0	0	0	0	1	0	0	0	9532	1059	37	1	369	1	MESP2	15	90319955	Missense_Mutation	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10		90319955	12211437	44	5015											
OR2C1	4993	mdanderson.org	37	chr16	3406387	3406387	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctggctgtgattgcctgCctgggtggcttgggcaactc	15	11	0	1	rs1218763	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_012368	exon1	c.C447T	p.C149C	TGCCTGCCTGGGT		34	3	0.09	35	0	0				0	0					T	3406387	C	T	3406387	2	4	71	1	0	0	0	0	0	0	0	1	11039	747	26	2		2	OR2C1	16	3406387	Silent	SNP	C	TCGA-2G-AALS-01A-12D-A42Y-10		3406387	86948366	45	5016											
CES1	1066	mdanderson.org	37	chr16	55853459	55853459	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	caacctaccattttcaatgtCgtctccaagagctcctcttc	4	15	3	1	rs114275306	bycluster;byfrequency;by1000genomes	TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	CES1_ENST00000360526,colon,carcinoma,-1,1	CES1_ENST00000360526	NM_001025195	exon7	c.G894A	p.T298T	CAATGTCGTCTCC		39	3	0.08	26	0	0	0.001	-1	1	9	0	0				T	55853459	C	T	55853459	2	4	71	1	0	0	0	0	0	0	0	1	3291	871	31	1		1	CES1	16	55853459	Silent	SNP	C	TCGA-2G-AALS-01A-12D-A42Y-10	52447072	55853459	34501294	46	5017											
TRPV1	7442	mdanderson.org	37	chr17	3493259	3493259	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgtcggccgtgttgtcggCcacctccaccagggcgtgca	14	14	0	0	rs201089655	alternate_allele	TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_080706	exon5	c.G886A	p.A296T	TGTCGGCCACCTC		51	3	0.06	42	0	0				3	0	0				T	3493259	C	T	3493259	3	4	71	1	0	0	0	0	1	0	0	0	16655	739	26	2	1350	2	TRPV1	17	3493259	Missense_Mutation	SNP	C	TCGA-2G-AALS-01A-12D-A42Y-10		3493259	77701951	47	5018											
SLC6A4	6532	broad.mit.edu	37	chr17	28548797	28548797	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggtcgctgggatagagtgCcgtgtgtcatctcccgcacc	14	12	2	1	rs202193339		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	SLC6A4	NM_001045	exon3	c.G180A	p.R60R	AGAGTGCCGTGTG		203	6	0.03	176	0	0		60		0	0					T	28548797	C	T	28548797	2	4	71	1	0	0	0	0	0	0	0	1	14740	726	26	2		2	SLC6A4	17	28548797	Silent	SNP	C	TCGA-2G-AALS-01A-12D-A42Y-10	25055538	28548797	52646413	48	5019											
LRRC37B	114659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	30374805	30374805	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagcatctgtagggaatccAgaaggagcgttcatgaagat	13	6	2	3	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_052888	exon9	c.A2268G	p.P756P	GAATCCAGAAGGA		82	10	0.12	66	0	0				15	3	0.2				G	30374805	A	G	30374805	2	3	71	1	0	0	0	0	0	0	0	1	9038	175	7	4		4	LRRC37B	17	30374805	Silent	SNP	A	TCGA-2G-AALS-01A-12D-A42Y-10	1826008	30374805	50820405	49	5020											
C17orf64	124773	mdanderson.org	37	chr17	58506854	58506854	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggagcggctgtccaacatGcagaccccaggtcaagggag	14	11	1	1	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_181707	exon5	c.G561T	p.M187I	CAACATGCAGACC		59	4	0.07	51	0	0				2	0	0				T	58506854	G	T	58506854	3	4	71	1	0	0	0	0	1	0	0	0	1881	1319	46	2	579	2	C17orf64	17	58506854	Missense_Mutation	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10	28132049	58506854	22688356	50	5021											
ZBTB7C	201501	hgsc.bcm.edu	37	chr18	45567151	45567151	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatctccagcatcctggctgCgttgaggatgtgcttgacat	12	10	1	2	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	ZBTB7C,NS,carcinoma,0,1	ZBTB7C	NM_001039360	exon2	c.G328A	p.A110T	TGGCTGCGTTGAG		74	3	0.04	87	0	0		0	1	1	0	0				T	45567151	C	T	45567151	3	4	71	1	0	0	0	0	1	0	0	0	17613	768	27	1	1539	1	ZBTB7C	18	45567151	Missense_Mutation	SNP	C	TCGA-2G-AALS-01A-12D-A42Y-10		45567151	32510097	51	5022											
TPM4	7171	mdanderson.org	37	chr19	16198892	16198892	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagagggcagaggagcgtgCggaggtgtctgaactgtgag	21	5	1	4	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	TPM4_ENST00000344824,colon,carcinoma,0,1	TPM4_ENST00000344824	NM_001145160	exon5	c.C548T	p.A183V	AGCGTGCGGAGGT		56	3	0.05	56	0	0		0	1	461	0	0				T	16198892	C	T	16198892	3	4	71	1	0	0	0	0	1	0	0	0	16468	768	27	1	702	1	TPM4	19	16198892	Missense_Mutation	SNP	C	TCGA-2G-AALS-01A-12D-A42Y-10		16198892	42930091	52	5023											
DYRK1B	9149	mdanderson.org	37	chr19	40316581	40316581	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgggggtggtggtgaggttGgtgatgggggacgaccaagg	23	5	0	2	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_004714	exon11	c.C1664A	p.P555Q	GAGGTTGGTGATG		21	2	0.1	26	0	0				25	0	0				T	40316581	G	T	40316581	3	4	71	1	0	0	0	0	1	0	0	0	4881	1348	47	3	229	3	DYRK1B	19	40316581	Missense_Mutation	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10	24117689	40316581	18812402	53	5024											
SCAF1	58506	mdanderson.org	37	chr19	50156724	50156724	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggcggaggaggaggaggaGgaagaagaagaggaggagga	25	1	0	3	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_021228	exon7	c.G3078A	p.E1026E	GGAGGAGGAAGAA		25	2	0.08	13	0	0				26	0	0				A	50156724	G	A	50156724	2	1	71	1	0	0	0	0	0	0	0	1	13920	991	35	3		3	SCAF1	19	50156724	Silent	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10	9840143	50156724	8972259	54	5025											
ZNF83	55769	bcgsc.ca	37	chr19	53116855	53116856	+	Missense_Mutation	DNP	CT	CT	TA													tgactgaagaccttgccacaCtcattacatttgtaaggttt					novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	CT	CT					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	ZNF83	NM_018300	exon3	c.A962T	p.E321V	GCCACACTCATTA		99	6	0.06	89	0	0		73		14	0	0				TA	53116856	CT	TA	53116855	3	4	71	1	0	0	0	0	1	0	0	0	18229	564	20	3	591	3	ZNF83	19	53116855	Missense_Mutation	DNP	CT	TCGA-2G-AALS-01A-12D-A42Y-10	2960131	53116855	6012128	55	5026	14	2									
ZNF83	55769	bcgsc.ca	37	chr19	53116865	53116865	+	Missense_Mutation	SNP	T	T	C													ccttgccacactcattacatTtgtaaggtttctctccagta					rs141749555		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	ZNF83	NM_018300	exon3	c.A953G	p.K318R	TTACATTTGTAAG		95	6	0.06	90	0	0		73		11	0	0				C	53116865	T	C	53116865	3	2	71	1	0	0	0	0	1	0	0	0	18229	1841	64	4	601	4	ZNF83	19	53116865	Missense_Mutation	SNP	T	TCGA-2G-AALS-01A-12D-A42Y-10	10	53116865	6012118	56	5027	14	2									
UBASH3A	53347	mdanderson.org	37	chr21	43867289	43867289	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gcatttaactggaggaactgGatctcaggcaactgagagcc	12	9	1	1	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	UBASH3A,bladder,carcinoma,0,1	UBASH3A	NM_018961	exon15	c.G1971T	p.W657C	GAACTGGATCTCA		23	2	0.09	26	0	0		0	1	18	0	0				T	43867289	G	T	43867289	3	4	71	1	0	0	0	0	1	0	0	0	16899	1183	41	3	2029	3	UBASH3A	21	43867289	Missense_Mutation	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10		43867289	4262606	57	5028											
DGCR8	54487	mdanderson.org	37	chr22	20073919	20073919	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caggagcagagcgcgacgtgCgggcggagtgcggtctgctc	19	11	1	1	rs118025402	bycluster;by1000genomes	TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_001190326	exon2	c.C433T	p.R145W	GACGTGCGGGCGG		51	3	0.06	37	0	0	0			21	0	0				T	20073919	C	T	20073919	3	4	71	1	0	0	0	0	1	0	0	0	4492	759	27	1	435	1	DGCR8	22	20073919	Missense_Mutation	SNP	C	TCGA-2G-AALS-01A-12D-A42Y-10		20073919	31230647	58	5029											
DDX17	10521	broad.mit.edu;mdanderson.org	37	chr22	38881967	38881967	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtgaaggaggaggagggggAggaggaggagggtattggta	24	1	0	1	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	DDX17	NM_001098504	exon13	c.T2169C	p.P723P	AGGGGGAGGAGGA		52	3	0.06	62	1	0.0161290323		73		103	0	0				G	38881967	A	G	38881967	2	3	71	1	0	0	0	0	0	0	0	1	4367	291	11	4		4	DDX17	22	38881967	Silent	SNP	A	TCGA-2G-AALS-01A-12D-A42Y-10	18808048	38881967	12422599	59	5030											
IQSEC2	23096	mdanderson.org	37	chrX	53279934	53279934	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagagccgcgatctgagcgGtcactcaggtccacggagct	13	13	3	2	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_001111125	exon5	c.C1824A	p.D608E	TGAGCGGTCACTC		46	3	0.07	29	0	0				5	0	0				T	53279934	G	T	53279934	3	4	71	1	0	0	0	0	1	0	0	0	7861	1252	44	3	2686	3	IQSEC2	23	53279934	Missense_Mutation	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10		53279934	101990626	60	5031											
FAM104B	90736	mdanderson.org	37	chrX	55172630	55172630	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atacccctcatgcaagaactGgggaaagtttgcatcgggtt	11	9	1	1	rs113263757	bycluster	TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_001166700	exon3	c.C238T	p.Q80X	AGAACTGGGGAAA		40	4	0.1	23	2	0.0869565217				34	1	0.03				A	55172630	G	A	55172630	4	1	71	1	0	0	0	0	0	1	0	0	5417	1357	47	3	217	3	FAM104B	23	55172630	Nonsense_Mutation	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10	1892696	55172630	100097930	61	5032											
AR	367	mdanderson.org	37	chrX	66766585	66766585	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggatggatagctactccGgaccttacggggacatgcgg	14	11	0	0	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_000044	exon1	c.G1597T	p.G533X	TACTCCGGACCTT		52	3	0.06	38	0	0				0	0					T	66766585	G	T	66766585	4	4	71	1	0	0	0	0	0	1	0	0	833	1117	39	1	1599	1	AR	23	66766585	Nonsense_Mutation	SNP	G	TCGA-2G-AALS-01A-12D-A42Y-10	11593955	66766585	88503975	62	5033											
KPNA6	23633	mdanderson.org	37	chr1	32635499	32635499	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaggtacctggtctcactgGgctgcatcaaacccctatgt	9	13	2	0	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_012316	exon13	c.G1261T	p.G421C	TCACTGGGCTGCA		66	4	0.06	54	0	0				7	0	0				T	32635499	G	T	32635499	3	4	72	1	0	0	0	0	1	0	0	0	8476	1232	43	3	1311	3	KPNA6	1	32635499	Missense_Mutation	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10		32635499	216615122	1	5034											
FAM129A	116496	mdanderson.org	37	chr1	184764457	184764457	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaggcctctcctgggagcTccccctccatgggccccagg	12	18	1	0	rs150071238	bycluster;byfrequency;by1000genomes	TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_052966	exon14	c.A2441G	p.E814G	GGGAGCTCCCCCT		55	3	0.05	46	0	0	0.003			6	0	0				C	184764457	T	C	184764457	3	2	72	1	0	0	0	0	1	0	0	0	5467	1551	54	4	349	4	FAM129A	1	184764457	Missense_Mutation	SNP	T	TCGA-2G-AALT-01A-11D-A42Y-10	152128958	184764457	64486164	2	5035											
EPRS	2058	broad.mit.edu	37	chr1	220195789	220195789	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actcatgtcaatttttgctcGcaaacaacaggactgaccaa	6	11	2	1	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	EPRS,NS,carcinoma,0,1	EPRS	NM_004446	exon9	c.C1015T	p.R339X	TTGCTCGCAAACA		263	6	0.02	199	1	0.0050251256		140	1	0	0					A	220195789	G	A	220195789	4	1	72	1	0	0	0	0	0	1	0	0	5219	1095	38	1	3619	1	EPRS	1	220195789	Nonsense_Mutation	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10	35431332	220195789	29054832	3	5036											
EMILIN1	11117	mdanderson.org	37	chr2	27305716	27305716	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccttcggaggagcaggaggAgagctggcctggggctcctg	18	11	0	1	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_007046	exon4	c.A1277G	p.E426G	AGGAGGAGAGCTG		23	3	0.13	11	0	0				351	0	0				G	27305716	A	G	27305716	3	3	72	1	0	0	0	0	1	0	0	0	5121	304	11	4	1291	4	EMILIN1	2	27305716	Missense_Mutation	SNP	A	TCGA-2G-AALT-01A-11D-A42Y-10		27305716	215893657	4	5037											
AMMECR1L	83607	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	128628896	128628896	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaatgcagccacgaagccGcttgtcccgccctgtcttcc	8	19	1	0	rs371126249		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	AMMECR1L	NM_031445	exon4	c.C445A	p.R149R	GAAGCCGCTTGTC		98	27	0.28	88	1	0.0113636364		22		0	0					T	128628896	G	T	128628896	2	4	72	1	0	0	0	0	0	0	0	1	575	1086	38	1		1	AMMECR1L	2	128628896	Silent	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10	101323180	128628896	114570477	5	5038											
LRP1B	53353	broad.mit.edu	37	chr2	141751584	141751585	+	In_Frame_Ins	INS	-	-	CGCTTC													gcagtttactgaatcctcatINScgcttccgtctaggcagtca					novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	LRP1B	NM_018557	exon16	c.2624_2625insGAAGCG	p.D875delinsGSD	TCCTCATCGCTTC		86	8	0.09	82	0	0		1315		0	0					CGCTTC	141751585	-	CGCTTC	141751584	7	5	72	1	0	1	1	0	0	0	0	0	8999	1435	50	0	11479	0	LRP1B	2	141751584	In_Frame_Ins	INS	-	TCGA-2G-AALT-01A-11D-A42Y-10	13122688	141751584	101447789	6	5039											
UBR3	130507	mdanderson.org	37	chr2	170684527	170684527	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccaggccgggggcgcctgCgactgcggggacagcaacgt	18	13	0	0	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_172070	exon1	c.C510T	p.C170C	CGCCTGCGACTGC		17	3	0.18	16	0	0				0	0					T	170684527	C	T	170684527	2	4	72	1	0	0	0	0	0	0	0	1	16963	776	27	1		1	UBR3	2	170684527	Silent	SNP	C	TCGA-2G-AALT-01A-11D-A42Y-10	28932943	170684527	72514846	7	5040											
ATP2B2	491	mdanderson.org	37	chr3	10413495	10413495	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcctggtccacacttaccaGaatcttggtggtgtaggcgc	12	11	1	1	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_001001331	exon12	c.C1657A	p.L553M	TTACCAGAATCTT		123	5	0.04	108	0	0				0	0					T	10413495	G	T	10413495	3	4	72	1	0	0	0	0	1	0	0	0	1139	933	33	3	2122	3	ATP2B2	3	10413495	Missense_Mutation	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10		10413495	187608935	8	5041											
QTRTD1	79691	mdanderson.org	37	chr3	113798888	113798888	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcagttttgattaccagccGaatcctgaagagacacgtaa	8	9	1	3	rs370420090	alternate_allele	TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_001256835	exon7	c.G918T	p.P306P	CCAGCCGAATCCT		90	4	0.04	99	0	0				1	0	0				T	113798888	G	T	113798888	2	4	72	1	0	0	0	0	0	0	0	1	12937	1045	37	1		1	QTRTD1	3	113798888	Silent	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10	103385393	113798888	84223542	9	5042											
RHO	6010	broad.mit.edu	37	chr3	129252455	129252455	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcttgccttccagttccGgaactgcatgctcaccacca	7	17	2	0	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	RHO	NM_000539	exon5	c.G941T	p.R314L	AGTTCCGGAACTG		75	3	0.04	66	0	0		57		0	0					T	129252455	G	T	129252455	3	4	72	1	0	0	0	0	1	0	0	0	13379	1116	39	1	959	1	RHO	3	129252455	Missense_Mutation	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10	15453567	129252455	68769975	10	5043											
MUC4	4585	hgsc.bcm.edu	37	chr3	195509484	195509484	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgacaggaagaagggtggcGtgacctgtggatgctgagga	19	5	0	4	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	MUC4_ENST00000463781,NS,carcinoma,-2,1	MUC4_ENST00000463781	NM_018406	exon2	c.C8967G	p.H2989Q	GGTGGCGTGACCT		52	3	0.06	48	1	0.0208333333		-2	1	0	0					C	195509484	G	C	195509484	3	2	72	1	0	0	0	0	1	0	0	0	10025	1136	40	5		5	MUC4	3	195509484	Missense_Mutation	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10	66257029	195509484	2512946	11	5044											
ZNF518B	85460	bcgsc.ca;mdanderson.org	37	chr4	10445650	10445650	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttggggattaacactggcGtggcaacatgagccttcctg	12	10	0	1	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	ZNF518B	NM_053042	exon3	c.C2303T	p.T768M	ACTGGCGTGGCAA		180	6	0.03	157	0	0		116		4	0	0				A	10445650	G	A	10445650	3	1	72	1	0	0	0	0	1	0	0	0	18019	1145	40	1	925	1	ZNF518B	4	10445650	Missense_Mutation	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10		10445650	180708626	12	5045											
TECRL	253017	broad.mit.edu	37	chr4	65240937	65240937	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catgaatagtagatgattgtGtcacctgaaaaggaaaagaa	10	4	1	5	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	TECRL	NM_001010874	exon2	c.C239A	p.T80K	GATTGTGTCACCT		468	8	0.02	412	0	0		106		0	0					T	65240937	G	T	65240937	3	4	72	1	0	0	0	0	1	0	0	0	15804	1377	48	3	896	3	TECRL	4	65240937	Missense_Mutation	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10	54795287	65240937	125913339	13	5046											
MAPK10	5602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	87022243	87022243	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccaggatgacctcagggGctctgtaataacgtgtcacc	10	13	3	1	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	MAPK10_ENST00000449047,NS,carcinoma,0,3	MAPK10_ENST00000449047	NM_002753	exon8	c.C692A	p.A231D	TCAGGGGCTCTGT		155	33	0.21	130	0	0		0	3	5	2	0.4				T	87022243	G	T	87022243	3	4	72	1	0	0	0	0	1	0	0	0	9321	1203	42	2	735	2	MAPK10	4	87022243	Missense_Mutation	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10	21781306	87022243	104132033	14	5047											
KIAA0947	23379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr5	5462346	5462346	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgaaaatatcctcatcCaaaaccaagacattgtgaga	5	11	1	3	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_015325	exon13	c.C2899T	p.Q967X	CTCATCCAAAACC		124	51	0.41	132	0	0				0	0					T	5462346	C	T	5462346	4	4	72	1	0	0	0	0	0	1	0	0	8243	595	21	3	2949	3	KIAA0947	5	5462346	Nonsense_Mutation	SNP	C	TCGA-2G-AALT-01A-11D-A42Y-10		5462346	175452914	15	5048											
CAMK4	814	mdanderson.org	37	chr5	110819954	110819954	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caagccttagagaaagttaaAggtgcagatataaatgctga	10	5	0	3	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_001744	exon11	c.A1212G	p.K404K	AGTTAAAGGTGCA		47	3	0.06	75	0	0				6	0	0				G	110819954	A	G	110819954	2	3	72	1	0	0	0	0	0	0	0	1	2623	69	3	4		4	CAMK4	5	110819954	Silent	SNP	A	TCGA-2G-AALT-01A-11D-A42Y-10	105357608	110819954	70095306	16	5049											
TCERG1	10915	hgsc.bcm.edu;broad.mit.edu	37	chr5	145838663	145838664	+	In_Frame_Ins	INS	-	-	CCCAGG													ggcccaggcccaggcccaggINScccaggcccaagcccaagcc					novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	TCERG1	NM_006706	exon4	c.655_656insCCCAGG	p.A219delinsAQA	GCCCAGGCCCAGG		135	42	0.31	128	0	0		148		2	0	0				CCCAGG	145838664	-	CCCAGG	145838663	7	5	72	1	0	1	1	0	0	0	0	0	15744	1203	42	0	669	0	TCERG1	5	145838663	In_Frame_Ins	INS	-	TCGA-2G-AALT-01A-11D-A42Y-10	35018709	145838663	35076597	17	5050											
HIST1H2AA	221613	broad.mit.edu;mdanderson.org	37	chr6	25726743	25726743	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcttttcctccctgcttccCtcgtccagacatctcctcgc	5	19	1	1	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	HIST1H2AA,NS,malignant_melanoma,+2,2	HIST1H2AA	NM_170745	exon1	c.G13A	p.G5R	GCTTCCCTCGTCC		63	3	0.05	70	0	0		34	2	0	0					T	25726743	C	T	25726743	3	4	72	1	0	0	0	0	1	0	0	0	7168	681	24	3	386	3	HIST1H2AA	6	25726743	Missense_Mutation	SNP	C	TCGA-2G-AALT-01A-11D-A42Y-10		25726743	145388324	18	5051											
SP8	221833	mdanderson.org	37	chr7	20824970	20824970	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgcccccgccgccgccgcCgctgcccccggaaactccgg	12	24	0	0	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_182700	exon2	c.G466A	p.G156S	CGCCGCCGCTGCC		71	4	0.06	59	0	0				0	0					T	20824970	C	T	20824970	3	4	72	1	0	0	0	0	1	0	0	0	15023	652	23	1	1064	1	SP8	7	20824970	Missense_Mutation	SNP	C	TCGA-2G-AALT-01A-11D-A42Y-10		20824970	138313693	19	5052											
BAZ1B	9031	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	72892059	72892060	+	Frame_Shift_Del	DEL	TC	TC	-													ctcttggtcctcataccgctTctgtttttctaatctctcaa					novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	TC	TC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	BAZ1B	NM_032408	exon7	c.1732_1733del	p.578_578del	ACCGCTTCTGTTT		200	30	0.15	173	0	0		147		4	0	0				-	72892060	TC	-	72892059	7	5	72	1	0	1	0	1	0	0	0	0	1328	1792	62	0	2771	0	BAZ1B	7	72892059	Frame_Shift_Del	DEL	TC	TCGA-2G-AALT-01A-11D-A42Y-10	52067089	72892059	86246604	20	5053											
ZNF777	27153	mdanderson.org	37	chr7	149128883	149128883	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgctcactcgcccgtgtggGtccgcaggtggtacttgagc	15	13	1	1	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_015694	exon6	c.C2480A	p.T827N	GTGTGGGTCCGCA		11	3	0.27	8	0	0				7	0	0				T	149128883	G	T	149128883	3	4	72	1	0	0	0	0	1	0	0	0	18198	1261	44	3	19	3	ZNF777	7	149128883	Missense_Mutation	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10	76236824	149128883	10009780	21	5054											
UBXN8	7993	broad.mit.edu	37	chr8	30614674	30614675	+	RNA	INS	-	-	A													gtgaaaccccatctctatttINSaaaaaaaaaaaaaaagaata					novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	UBXN8	.	.	.	.	TCTATTTAAAAAA		6	2	0.33	5	0	0		13		0	0					A	30614675	-	A	30614674	6	5	72	0	1	1	1	0	0	0	0	0	16978	1769	61	0		0	UBXN8	8	30614674	RNA	INS	-	TCGA-2G-AALT-01A-11D-A42Y-10		30614674	115749348	22	5055											
PLEC	5339	mdanderson.org	37	chr8	145001861	145001861	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgcagtcgctcccccaccTcctgtgccccccgcagctca	8	22	1	0	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_201380	exon27	c.A3884G	p.E1295G	CCCACCTCCTGTG		37	3	0.08	34	0	0				0	0					C	145001861	T	C	145001861	3	2	72	1	0	0	0	0	1	0	0	0	12099	1551	54	4	10194	4	PLEC	8	145001861	Missense_Mutation	SNP	T	TCGA-2G-AALT-01A-11D-A42Y-10	114387187	145001861	1362161	23	5056											
FGD3	89846	mdanderson.org	37	chr9	95797716	95797716	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggggcatgtgtggaagctgCagtgggccaagcagtcctgg	18	9	0	0	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_001083536	exon18	c.C2023T	p.Q675X	AAGCTGCAGTGGG		67	4	0.06	82	0	0				18	0	0				T	95797716	C	T	95797716	4	4	72	1	0	0	0	0	0	1	0	0	5866	711	25	2	2085	2	FGD3	9	95797716	Nonsense_Mutation	SNP	C	TCGA-2G-AALT-01A-11D-A42Y-10		95797716	45415715	24	5057											
NAIF1	203245	mdanderson.org	37	chr9	130829051	130829051	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaccgccaccactgccaccGcctgtcccaggccccccagc	7	25	0	0	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	NAIF1,NS,carcinoma,0,1	NAIF1	NM_197956	exon1	c.C330A	p.G110G	GCCACCGCCTGTC		42	4	0.1	59	0	0		0	1	2	0	0				T	130829051	G	T	130829051	2	4	72	1	0	0	0	0	0	0	0	1	10193	1074	38	1		1	NAIF1	9	130829051	Silent	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10	35031335	130829051	10384380	25	5058											
CSGALNACT2	55454	hgsc.bcm.edu	37	chr10	43659372	43659372	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaagaatttaatcgtggaCgaggactaaatgtgggtgcc	13	5	0	2	rs76607193	bycluster;byfrequency	TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	CSGALNACT2,trunk,malignant_melanoma,0,1	CSGALNACT2	NM_018590	exon5	c.C1039T	p.R347X	CGTGGACGAGGAC		119	5	0.04	122	0	0	0.003	0	1	5	0	0				T	43659372	C	T	43659372	4	4	72	1	0	0	0	0	0	1	0	0	3964	528	19	1	1053	1	CSGALNACT2	10	43659372	Nonsense_Mutation	SNP	C	TCGA-2G-AALT-01A-11D-A42Y-10		43659372	91875375	26	5059											
HPS6	79803	mdanderson.org	37	chr10	103826001	103826001	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccggaccctgctccgagGccttcctgggttgctgtccc	11	17	0	0	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_024747	exon1	c.G770T	p.G257V	TCCGAGGCCTTCC		38	3	0.08	59	0	0				8	0	0				T	103826001	G	T	103826001	3	4	72	1	0	0	0	0	1	0	0	0	7383	1203	42	2	772	2	HPS6	10	103826001	Missense_Mutation	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10	60166629	103826001	31708746	27	5060											
MTCH2	23788	mdanderson.org	37	chr11	47647283	47647283	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caaagggataggtcaacataCtcgcaaaaaactgtaaaatg	8	7	1	0	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_014342	exon11	c.G692A	p.S231N	AACATACTCGCAA		47	3	0.06	75	0	0				112	0	0				T	47647283	C	T	47647283	3	4	72	1	0	0	0	0	1	0	0	0	9961	565	20	3	231	3	MTCH2	11	47647283	Missense_Mutation	SNP	C	TCGA-2G-AALT-01A-11D-A42Y-10		47647283	87359233	28	5061											
SPTBN2	6712	mdanderson.org	37	chr11	66454940	66454940	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcctccatctcctgcttgCggcacagcatcccctccatc	7	19	1	0	rs370257588		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_006946	exon34	c.G6680A	p.R2227H	TGCTTGCGGCACA		18	2	0.11	26	0	0				4	0	0				T	66454940	C	T	66454940	3	4	72	1	0	0	0	0	1	0	0	0	15175	768	27	1	508	1	SPTBN2	11	66454940	Missense_Mutation	SNP	C	TCGA-2G-AALT-01A-11D-A42Y-10	18807657	66454940	68551576	29	5062											
ANO1	55107	mdanderson.org	37	chr11	70026139	70026139	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatatcctcagaggcattGggaagcttgctgtcatcatc	9	10	3	1	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_018043	exon23	c.G2380T	p.G794W	GGCATTGGGAAGC		36	3	0.08	52	0	0				3	0	0				T	70026139	G	T	70026139	3	4	72	1	0	0	0	0	1	0	0	0	689	1348	47	3	2470	3	ANO1	11	70026139	Missense_Mutation	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10	3571199	70026139	64980377	30	5063											
CPM	1368	broad.mit.edu	37	chr12	69264140	69264140	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattatattcaaaagcatcGgggaaatttcgattcaagtc	7	6	2	0	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	CPM	NM_001005502	exon5	c.C471A	p.P157P	AGCATCGGGGAAA		87	4	0.05	60	0	0		30		0	0					T	69264140	G	T	69264140	2	4	72	1	0	0	0	0	0	0	0	1	3831	1103	39	1		1	CPM	12	69264140	Silent	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10		69264140	64587755	31	5064											
TAOK3	51347	mdanderson.org	37	chr12	118590215	118590215	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcctcatctagccgtaaCtgcggacacagaagacacac	9	13	2	3	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_016281	exon21	c.2353-1G>T	.	CCGTAACTGCGGA		44	3	0.07	39	0	0				1	0	0				A	118590215	C	A	118590215	5	1	72	1	0	0	0	0	0	0	1	0	15605	579	20	3	352	3	TAOK3	12	118590215	Splice_Site	SNP	C	TCGA-2G-AALT-01A-11D-A42Y-10	49326075	118590215	15261680	32	5065											
PDX1	3651	broad.mit.edu	37	chr13	28494404	28494404	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tacatgggccgccagcccccGccgccgccgccgcacccgtt	11	22	0	0	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	PDX1	NM_000209	exon1	c.G129C	p.P43P	GCCCCCGCCGCCG		97	4	0.04	95	1	0.0105263158		7		0	0					C	28494404	G	C	28494404	2	2	72	1	0	0	0	0	0	0	0	1	11741	1074	38	5		5	PDX1	13	28494404	Silent	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10		28494404	86675474	33	5066											
NKX2-8	26257	broad.mit.edu	37	chr14	37050568	37050568	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggagaatagcacccgccGcttcttccttttctcggcgt	9	14	2	1	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	NKX2-8	NM_014360	exon2	c.C259A	p.R87R	CCCGCCGCTTCTT		97	3	0.03	94	1	0.0106382979		13		0	0					T	37050568	G	T	37050568	2	4	72	1	0	0	0	0	0	0	0	1	10500	1086	38	1		1	NKX2-8	14	37050568	Silent	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10		37050568	70298972	34	5067											
SIX4	51804	mdanderson.org	37	chr14	61190581	61190581	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggccgccgccgccgccactGccccttcctctccgctcacc	8	25	2	0	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_017420	exon1	c.C212T	p.A71V	GCCACTGCCCCTT		21	2	0.1	19	0	0				0	0					A	61190581	G	A	61190581	3	1	72	1	0	0	0	0	1	0	0	0	14403	1319	46	2	2145	2	SIX4	14	61190581	Missense_Mutation	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10	24140013	61190581	46158959	35	5068											
HIF1A	3091	mdanderson.org	37	chr14	62162532	62162532	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accgattcaccatggagggcGccggcggcgcgaacgacaag	15	13	1	0	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_001530	exon1	c.G10T	p.A4S	GAGGGCGCCGGCG		46	3	0.07	57	0	0				4	0	0				T	62162532	G	T	62162532	3	4	72	1	0	0	0	0	1	0	0	0	7143	1087	38	1	12	1	HIF1A	14	62162532	Missense_Mutation	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10	971951	62162532	45187008	36	5069											
JAG2	3714	mdanderson.org	37	chr14	105615089	105615089	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaacactcactggtgtcGcagagctcgccctcccagcc	10	17	1	1	rs370664484	alternate_allele	TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_002226	exon15	c.C2013A	p.C671X	GGTGTCGCAGAGC		55	3	0.05	28	0	0				4	0	0				T	105615089	G	T	105615089	4	4	72	1	0	0	0	0	0	1	0	0	7978	1079	38	1	1751	1	JAG2	14	105615089	Nonsense_Mutation	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10	43452557	105615089	1734451	37	5070											
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	7727167	7727167	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggtgagtgggaaaatgCctgcaatgaaatgcaacgga	13	8	0	2	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_020877	exon74	c.C11345A	p.A3782D	AAAATGCCTGCAA		84	14	0.17	70	0	0				0	0					A	7727167	C	A	7727167	3	1	72	1	0	0	0	0	1	0	0	0	4630	739	26	2	11639	2	DNAH2	17	7727167	Missense_Mutation	SNP	C	TCGA-2G-AALT-01A-11D-A42Y-10		7727167	73468043	38	5071											
SREBF1	6720	mdanderson.org	37	chr17	17716904	17716904	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccgcatggcgggccggaaGctctgtgccagccgcctcag	14	16	2	0	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_001005291	exon18	c.C3171A	p.S1057R	CCGGAAGCTCTGT		19	3	0.16	24	0	0				71	1	0.01				T	17716904	G	T	17716904	3	4	72	1	0	0	0	0	1	0	0	0	15196	962	34	2	374	2	SREBF1	17	17716904	Missense_Mutation	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10	9989737	17716904	63478306	39	5072											
KRT14	3861	mdanderson.org	37	chr17	39743003	39743003	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggacggaggagatgcggctGgagccgcccccgatgccgcc	17	14	0	1	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_000526	exon1	c.C84T	p.S28S	GCGGCTGGAGCCG		33	3	0.09	17	0	0				2	0	0				A	39743003	G	A	39743003	2	1	72	1	0	0	0	0	0	0	0	1	8493	1335	47	3		3	KRT14	17	39743003	Silent	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10	22026099	39743003	41452207	40	5073											
JUP	3728	mdanderson.org	37	chr17	39921060	39921060	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtgcttgcccagggcctGcatcccacctggggcaggga	15	14	0	0	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_021991	exon7	c.C1063T	p.Q355X	GGGCCTGCATCCC		56	3	0.05	55	0	0				101	0	0				A	39921060	G	A	39921060	4	1	72	1	0	0	0	0	0	1	0	0	8015	1328	46	2	1206	2	JUP	17	39921060	Nonsense_Mutation	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10	178057	39921060	41274150	41	5074											
CD97	976	mdanderson.org	37	chr19	14515207	14515207	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccacaggacgtgatgcctGggccacggcaggagctgctc	15	14	0	1	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_078481	exon13	c.G1462T	p.G488W	ATGCCTGGGCCAC		34	3	0.09	30	0	0				42	0	0				T	14515207	G	T	14515207	3	4	72	1	0	0	0	0	1	0	0	0	3071	1348	47	3	1512	3	CD97	19	14515207	Missense_Mutation	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10		14515207	44613776	42	5075											
MYO9B	4650	mdanderson.org	37	chr19	17309075	17309075	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccaggcgacgcatcctcccTcccagacgcagggctgtccc	11	19	0	1	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_004145	exon24	c.T4196C	p.L1399P	CCTCCCTCCCAGA		60	3	0.05	67	0	0				13	0	0				C	17309075	T	C	17309075	3	2	72	1	0	0	0	0	1	0	0	0	10132	1551	54	4	4286	4	MYO9B	19	17309075	Missense_Mutation	SNP	T	TCGA-2G-AALT-01A-11D-A42Y-10	2793868	17309075	41819908	43	5076											
LTBP4	8425	hgsc.bcm.edu;mdanderson.org	37	chr19	41128449	41128449	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagtgctactttgacacaGcggccccggatgcatgtgac	14	11	0	2	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	.	.	.	.	GACACAGCGGCCC		63	4	0.06	64	0	0				180	0	0				T	41128449	G	T	41128449	3	4	72	1	0	0	0	0	1	0	0	0	9120	971	34	2	3956	2	LTBP4	19	41128449	Missense_Mutation	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10	23819374	41128449	18000534	44	5077											
BAGE	85319	broad.mit.edu	37	chr21	11087766	11087766	+	RNA	DEL	T	T	-													ataaagtcagtaagactgtaTtttttatggactcatcacaa					novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	.	.	.	.	ACTGTATTTTTTA		10	4	0.4	4	0	0				0	0					-	11087766	T	-	11087766	6	5	72	0	1	1	0	1	0	0	0	0	1289	1508	52	0		0	BAGE	21	11087766	RNA	DEL	T	TCGA-2G-AALT-01A-11D-A42Y-10		11087766	37042129	45	5078											
ZNF74	7625	broad.mit.edu	37	chr22	20759905	20759905	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcaacgcgttcccgagggGggacccttgctggacacacg	14	14	0	0	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	ZNF74	NM_001256523	exon4	c.G496A	p.G166R	CGAGGGGGGACCC		114	4	0.04	110	0	0		54		2	0	0				A	20759905	G	A	20759905	3	1	72	1	0	0	0	0	1	0	0	0	18176	1219	43	3	600	3	ZNF74	22	20759905	Missense_Mutation	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10		20759905	30544661	46	5079											
SUSD2	56241	mdanderson.org	37	chr22	24580118	24580118	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagtgcaccccaacaaaGtgtcaatgatggagaagagc	11	11	1	3	novel		TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	.	NM_019601	exon4	c.G454T	p.V152L	AACAAAGTGTCAA		60	3	0.05	46	0	0				1	0	0				T	24580118	G	T	24580118	3	4	72	1	0	0	0	0	1	0	0	0	15463	1029	36	3	468	3	SUSD2	22	24580118	Missense_Mutation	SNP	G	TCGA-2G-AALT-01A-11D-A42Y-10	3820213	24580118	26724448	47	5080											
CDR1	1038	broad.mit.edu	37	chrX	139866495	139866495	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgtcttccaacaaaggtaCgtcttccagaaaatccacgt	6	11	2	1	rs147745826	byfrequency	TCGA-2G-AALT-01A-11D-A42Y-10	TCGA-2G-AALT-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7931e069-fecb-4dd0-aac4-0eb70729e93c	2e330225-3768-4881-a499-65117453697e	.	CDR1	NM_004065	exon1	c.G37A	p.V13I	AAGGTACGTCTTC		699	7	0.01	380	3	0.0078947368		58		0	0					T	139866495	C	T	139866495	3	4	72	1	0	0	0	0	1	0	0	0	3193	536	19	1	755	1	CDR1	23	139866495	Missense_Mutation	SNP	C	TCGA-2G-AALT-01A-11D-A42Y-10		139866495	15404065	48	5081											
NPHP4	261734	mdanderson.org	37	chr1	5969244	5969244	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtgagttctgcggggcagCgagaactcgaggtactggcg	18	8	1	2	rs200462413	by1000genomes	TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_015102	exon12	c.G1471A	p.A491T	GGGCAGCGAGAAC		44	3	0.07	41	0	0	0.001			3	0	0				T	5969244	C	T	5969244	3	4	73	1	0	0	0	0	1	0	0	0	10627	768	27	1	2885	1	NPHP4	1	5969244	Missense_Mutation	SNP	C	TCGA-2G-AALW-01A-11D-A42Y-10		5969244	243281377	1	5082											
GRIK3	2899	broad.mit.edu	37	chr1	37271834	37271834	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcgtagtcggccgtcagggCcctctggatgccctcctcgt	13	16	2	0	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	GRIK3	NM_000831	exon14	c.G2185T	p.A729S	TCAGGGCCCTCTG		121	4	0.03	115	0	0		195		0	0					A	37271834	C	A	37271834	3	1	73	1	0	0	0	0	1	0	0	0	6815	739	26	2	586	2	GRIK3	1	37271834	Missense_Mutation	SNP	C	TCGA-2G-AALW-01A-11D-A42Y-10	31302590	37271834	211978787	2	5083											
PTPRF	5792	mdanderson.org	37	chr1	44057152	44057152	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggcatcacctacagcctgCgcgtgcttgccttcaccgcc	9	18	2	0	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_002840	exon9	c.C1459T	p.R487C	AGCCTGCGCGTGC		30	3	0.1	35	0	0				32	0	0				T	44057152	C	T	44057152	3	4	73	1	0	0	0	0	1	0	0	0	12852	768	27	1	1485	1	PTPRF	1	44057152	Missense_Mutation	SNP	C	TCGA-2G-AALW-01A-11D-A42Y-10	6785318	44057152	205193469	3	5084											
LRRC41	10489	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr1	46768994	46768994	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaggcctcgggcgccgccaTcttggggaggtgcgcgagcc	17	15	1	0	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_006369	exon1	c.A1T	p.M1L	CCGCCATCTTGGG		40	14	0.35	32	0	0				2	0	0				A	46768994	T	A	46768994	3	1	73	1	0	0	0	0	1	0	0	0	9043	1435	50	5	2477	5	LRRC41	1	46768994	Missense_Mutation	SNP	T	TCGA-2G-AALW-01A-11D-A42Y-10	2711842	46768994	202481627	4	5085											
SLAMF8	56833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	159799841	159799841	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agactctgtaccattcccgcTtcctgggccgagcccagcta	9	16	1	1	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_020125	exon2	c.T226G	p.F76V	TCCCGCTTCCTGG		113	46	0.41	89	0	0				22	0	0				G	159799841	T	G	159799841	3	3	73	1	0	0	0	0	1	0	0	0	14424	1609	56	4	232	4	SLAMF8	1	159799841	Missense_Mutation	SNP	T	TCGA-2G-AALW-01A-11D-A42Y-10	113030847	159799841	89450780	5	5086											
IL19	29949	hgsc.bcm.edu;mdanderson.org	37	chr1	207010078	207010078	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctcagtagacaaccacgGtctcaggagatgtctgattt	11	9	3	3	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_153758	exon2	c.G185T	p.G62V	ACCACGGTCTCAG		88	4	0.05	84	0	0				0	0					T	207010078	G	T	207010078	3	4	73	1	0	0	0	0	1	0	0	0	7692	1261	44	3	191	3	IL19	1	207010078	Missense_Mutation	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10	47210237	207010078	42240543	6	5087											
FMN2	56776	broad.mit.edu	37	chr1	240371580	240371580	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcataccccctccgcccccActtcccggagcgggcatacc	9	21	0	0	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	FMN2,NS,carcinoma,+2,1	FMN2	NM_020066	exon5	c.A3468T	p.P1156P	GCCCCCACTTCCC		76	7	0.09	65	3	0.0461538462		451	1	0	0					T	240371580	A	T	240371580	2	4	73	1	0	0	0	0	0	0	0	1	5982	146	6	5		5	FMN2	1	240371580	Silent	SNP	A	TCGA-2G-AALW-01A-11D-A42Y-10	33361502	240371580	8879041	7	5088											
OR2L3	391192	hgsc.bcm.edu	37	chr1	248224864	248224864	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catctatagcctgaggaacaAggaggtgatgggggccctga	15	8	1	3	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	OR2L3,NS,carcinoma,+1,1	OR2L3	NM_001004687	exon1	c.A881G	p.K294R	GGAACAAGGAGGT		81	5	0.06	88	1	0.0113636364		1	1	0	0					G	248224864	A	G	248224864	3	3	73	1	0	0	0	0	1	0	0	0	11055	72	3	4	883	4	OR2L3	1	248224864	Missense_Mutation	SNP	A	TCGA-2G-AALW-01A-11D-A42Y-10	7853284	248224864	1025757	8	5089											
EPAS1	2034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	46603853	46603853	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgaggagctggcccagctgGctcccaccccaggagacgcc	13	18	0	1	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_001430	exon9	c.G1210A	p.A404T	CAGCTGGCTCCCA		96	21	0.22	70	0	0				52	8	0.15				A	46603853	G	A	46603853	3	1	73	1	0	0	0	0	1	0	0	0	5178	1203	42	2	1244	2	EPAS1	2	46603853	Missense_Mutation	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10		46603853	196595520	9	5090											
BIN1	274	mdanderson.org	37	chr2	127825793	127825793	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagcctgcagtttgccttgGcaccactggggggcggcttt	15	11	0	1	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_139343	exon7	c.C558A	p.C186X	GCCTTGGCACCAC		42	3	0.07	35	0	0				22	0	0				T	127825793	G	T	127825793	4	4	73	1	0	0	0	0	0	1	0	0	1431	1195	42	2	1324	2	BIN1	2	127825793	Nonsense_Mutation	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10	81221940	127825793	115373580	10	5091											
POTEE	445582	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	131975985	131975985	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gttaaaagcagatggtggttGaggttgattccatgccggct	14	6	0	3	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_001083538	exon1	c.G10C	p.E4Q	GTGGTTGAGGTTG		456	102	0.22	406	0	0				0	0					C	131975985	G	C	131975985	3	2	73	1	0	0	0	0	1	0	0	0	12310	1291	45	5	12	5	POTEE	2	131975985	Missense_Mutation	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10	4150192	131975985	111223388	11	5092											
KCNH7	90134	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	163374508	163374508	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatctgcttcagaggggctGcagctttcttttgtaggaga	12	8	4	2	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	KCNH7	NM_033272	exon4	c.C624T	p.C208C	GGGGCTGCAGCTT		230	9	0.04	225	0	0		378		0	0					A	163374508	G	A	163374508	2	1	73	1	0	0	0	0	0	0	0	1	8080	1311	46	2		2	KCNH7	2	163374508	Silent	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10	31398523	163374508	79824865	12	5093											
ABCA12	26154	broad.mit.edu	37	chr2	215840567	215840567	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gggggagatctgaatctctgGataactgttgctggaatttc	13	6	2	2	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	ABCA12	NM_173076	exon34	c.C5323A	p.P1775T	TCTCTGGATAACT		189	5	0.03	145	0	0		368		0	0					T	215840567	G	T	215840567	3	4	73	1	0	0	0	0	1	0	0	0	30	1174	41	3	2544	3	ABCA12	2	215840567	Missense_Mutation	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10	52466059	215840567	27358806	13	5094											
MFSD1	64747	broad.mit.edu;mdanderson.org	37	chr3	158538116	158538116	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttttattggacttgggaaGtgagtattctctatgtttcc	9	7	1	1	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	MFSD1,NS,carcinoma,0,1	MFSD1	NM_001167903	exon8	c.893+1G>T	.	TGGGAAGTGAGTA		146	5	0.03	105	0	0		88	1	0	0					T	158538116	G	T	158538116	5	4	73	1	0	0	0	0	0	0	1	0	9576	1043	36	3	1045	3	MFSD1	3	158538116	Splice_Site	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10		158538116	39484314	14	5095											
GSX2	170825	broad.mit.edu	37	chr4	54966900	54966900	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatgcgcatcatcaccaccAcccgccgcagcaccaccatc	5	22	2	0	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	GSX2	NM_133267	exon1	c.A389C	p.H130P	ACCACCACCCGCC		71	18	0.25	68	20	0.2941176471		27		0	0					C	54966900	A	C	54966900	3	2	73	1	0	0	0	0	1	0	0	0	6890	159	6	4	391	4	GSX2	4	54966900	Missense_Mutation	SNP	A	TCGA-2G-AALW-01A-11D-A42Y-10		54966900	136187376	15	5096											
CLOCK	9575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	56319847	56319847	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctaaaagaattattaccttActacagtgtgagtacaaaca	5	7	1	2	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_004898	exon14	c.T1127C	p.V376A	TACCTTACTACAG		157	59	0.38	207	0	0				2	1	0.5				G	56319847	A	G	56319847	3	3	73	1	0	0	0	0	1	0	0	0	3572	391	14	4	1453	4	CLOCK	4	56319847	Missense_Mutation	SNP	A	TCGA-2G-AALW-01A-11D-A42Y-10	1352947	56319847	134834429	16	5097											
PF4V1	5197	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	74719119	74719119	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cccgcctcacccgcgccaccCgccaggagatgctgttcttg	10	19	2	1	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	PF4V1	NM_002620	exon1	c.C40G	p.R14G	GCCACCCGCCAGG		151	64	0.42	213	1	0.0046948357		8		0	0					G	74719119	C	G	74719119	3	3	73	1	0	0	0	0	1	0	0	0	11800	652	23	5	42	5	PF4V1	4	74719119	Missense_Mutation	SNP	C	TCGA-2G-AALW-01A-11D-A42Y-10	18399272	74719119	116435157	17	5098											
TRPC3	7222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	122831506	122831506	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatgtattccctaggtcctTccagccagagctctttacat	6	12	1	1	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_001130698	exon6	c.A1595G	p.E532G	GGTCCTTCCAGCC		57	19	0.33	61	0	0				0	0					C	122831506	T	C	122831506	3	2	73	1	0	0	0	0	1	0	0	0	16639	1783	62	4	1198	4	TRPC3	4	122831506	Missense_Mutation	SNP	T	TCGA-2G-AALW-01A-11D-A42Y-10	48112387	122831506	68322770	18	5099											
SMARCA5	8467	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	144471183	144471186	+	Frame_Shift_Del	DEL	TTGA	TTGA	-													gatgtaataccttaattactTtgattgaaagagaaaacatg					novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	TTGA	TTGA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	SMARCA5	NM_003601	exon23	c.3018_3021del	p.1006_1007del	ATTACTTTGATTG		90	31	0.34	101	0	0		73		142	0	0				-	144471186	TTGA	-	144471183	7	5	73	1	0	1	0	1	0	0	0	0	14824	1838	64	0	3109	0	SMARCA5	4	144471183	Frame_Shift_Del	DEL	TTGA	TCGA-2G-AALW-01A-11D-A42Y-10	21639677	144471183	46683093	19	5100											
GLRB	2743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	158057651	158057651	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaacatcttcctgagacaaAaatggaatgaccccaggctg	8	10	1	2	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_000824	exon5	c.A328G	p.K110E	AGACAAAAATGGA		151	63	0.42	175	0	0				3	1	0.33				G	158057651	A	G	158057651	3	3	73	1	0	0	0	0	1	0	0	0	6499	15	1	4	342	4	GLRB	4	158057651	Missense_Mutation	SNP	A	TCGA-2G-AALW-01A-11D-A42Y-10	13586468	158057651	33096625	20	5101											
FCHSD1	89848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	141026222	141026223	+	Missense_Mutation	DNP	CG	CG	AT													gggcagctcggctggtcaagCgctgaacctctttctccagg					novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	CG	CG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_033449	exon11	c.C991A	p.R331I	GTCAAGCGCTGAA		40	10	0.25	32	0	0				15	0	0				AT	141026223	CG	AT	141026222	3	1	73	1	0	0	0	0	1	0	0	0	5821	768	27	1	1120	1	FCHSD1	5	141026222	Missense_Mutation	DNP	CG	TCGA-2G-AALW-01A-11D-A42Y-10		141026222	39889038	21	5102											
TFAP2A	7020	broad.mit.edu;mdanderson.org	37	chr6	10402739	10402739	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttaccctctactagtgatGtgagcagggtaacgttggca	12	9	1	2	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	TFAP2A	NM_003220	exon5	c.C869A	p.T290K	AGTGATGTGAGCA		85	4	0.05	129	0	0		129		0	0					T	10402739	G	T	10402739	3	4	73	1	0	0	0	0	1	0	0	0	15846	1377	48	3	456	3	TFAP2A	6	10402739	Missense_Mutation	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10		10402739	160712328	22	5103											
HIVEP1	3096	broad.mit.edu;mdanderson.org	37	chr6	12121061	12121061	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caccttccagtagatctcagGttactcctcaaaaccagcaa	5	14	2	1	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	HIVEP1	NM_002114	exon4	c.G1033T	p.V345F	TCTCAGGTTACTC		90	5	0.06	137	0	0		242		6	0	0				T	12121061	G	T	12121061	3	4	73	1	0	0	0	0	1	0	0	0	7226	1261	44	3	1043	3	HIVEP1	6	12121061	Missense_Mutation	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10	1718322	12121061	158994006	23	5104											
TJAP1	93643	mdanderson.org	37	chr6	43473144	43473144	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gctctgccagctctgaagagGacctgctggtcagctggcag	14	12	3	2	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_001146017	exon10	c.G1225T	p.D409Y	GAAGAGGACCTGC		48	3	0.06	33	0	0				65	0	0				T	43473144	G	T	43473144	3	4	73	1	0	0	0	0	1	0	0	0	15987	1174	41	3	1255	3	TJAP1	6	43473144	Missense_Mutation	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10	31352083	43473144	127641923	24	5105											
PRIM2	5558	bcgsc.ca	37	chr6	57398202	57398202	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgggaaaatcaccatctttGtcatggaggccgaatgcagt	12	9	3	0	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	PRIM2	.	.	.	.	ATCTTTGTCATGG		237	16	0.07	219	1	0.00456621		95		27	8	0.3				A	57398202	G	A	57398202	1	1	73	0	1	0	0	0	0	0	0	0	12542	1377	48	3		3	PRIM2	6	57398202	RNA	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10	13925058	57398202	113716865	25	5106											
MTRF1L	54516	broad.mit.edu;mdanderson.org	37	chr6	153323668	153323668	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaatgggcttcagacccCgcctggcgctcgaggaaggt	13	12	2	1	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	MTRF1L	NM_019041	exon1	c.G153A	p.A51A	AGACCCCGCCTGG		220	52	0.24	126	1	0.0079365079		21		4	2	0.5				T	153323668	C	T	153323668	2	4	73	1	0	0	0	0	0	0	0	1	10007	639	23	1		1	MTRF1L	6	153323668	Silent	SNP	C	TCGA-2G-AALW-01A-11D-A42Y-10	95925466	153323668	17791399	26	5107											
TCP10	6953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	167789494	167789494	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgctcctgcagcgtggtGgcctgggaagcctgcactgg	16	12	1	0	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_004610	exon6	c.C648A	p.A216A	CGTGGTGGCCTGG		111	41	0.37	85	0	0				0	0					T	167789494	G	T	167789494	2	4	73	1	0	0	0	0	0	0	0	1	15769	1335	47	3		3	TCP10	6	167789494	Silent	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10	14465826	167789494	3325573	27	5108											
MLLT4	4301	broad.mit.edu	37	chr6	168366528	168366541	+	Frame_Shift_Del	DEL	CGCCCGGTCTGTGC	CGCCCGGTCTGTGC	-													caggttgctggagcccgaggCgcccggtctgtgccgccctc					novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	CGCCCGGTCTGTGC	CGCCCGGTCTGTGC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	MLLT4	NM_001207008	exon30	c.4988_4993del	p.1663_1665del	CCGAGGCGCCCGG		38	8	0.21	27	0	0		351		24	0	0				-	168366541	CGCCCGGTCTGTGC	-	168366528	7	5	73	1	0	1	0	1	0	0	0	0	9676	768	27	0	5288	0	MLLT4	6	168366528	Frame_Shift_Del	DEL	CGCCCGGTCTGTGC	TCGA-2G-AALW-01A-11D-A42Y-10	577034	168366528	2748539	28	5109											
C7orf26	79034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	6631350	6631350	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaggagcaaaccaaggactCtgttcggcagattatttttt	9	9	1	1	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_024067	exon2	c.C266G	p.S89C	AGGACTCTGTTCG		251	74	0.29	177	0	0				45	8	0.18				G	6631350	C	G	6631350	3	3	73	1	0	0	0	0	1	0	0	0	2397	913	32	5	272	5	C7orf26	7	6631350	Missense_Mutation	SNP	C	TCGA-2G-AALW-01A-11D-A42Y-10		6631350	152507313	29	5110											
URGCP	55665	mdanderson.org	37	chr7	43917157	43917157	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcctctggcctgccggcagCctccctgcctccacaagaca	9	20	1	1	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_001077663	exon6	c.G1905A	p.R635R	CGGCAGCCTCCCT		47	3	0.06	39	0	0				29	0	0				T	43917157	C	T	43917157	2	4	73	1	0	0	0	0	0	0	0	1	17085	738	26	2		2	URGCP	7	43917157	Silent	SNP	C	TCGA-2G-AALW-01A-11D-A42Y-10	37285807	43917157	115221506	30	5111											
EPHB6	2051	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr7	142562074	142562074	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctcctcctcCtcttcttcctctgcagcgtg	4	21	3	0	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_004445	exon7	c.C516T	p.S172S	CTCCTCCTCTTCT		103	5	0.05	70	0	0				8	0	0				T	142562074	C	T	142562074	2	4	73	1	0	0	0	0	0	0	0	1	5206	668	24	3		3	EPHB6	7	142562074	Silent	SNP	C	TCGA-2G-AALW-01A-11D-A42Y-10	98644917	142562074	16576589	31	5112											
SPAG11B	10407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	7308297	7308297	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcatctgtatttgataCgcaacacctattccagggat	6	10	3	1	rs370915382	alternate_allele	TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	SPAG11B_ENST00000398462,NS,carcinoma,0,2	SPAG11B_ENST00000398462	NM_058201	exon3	c.G340C	p.V114L	TTGATACGCAACA		250	59	0.24	355	0	0		0	2	0	0					G	7308297	C	G	7308297	3	3	73	1	0	0	0	0	1	0	0	0	15032	536	19	5	104	5	SPAG11B	8	7308297	Missense_Mutation	SNP	C	TCGA-2G-AALW-01A-11D-A42Y-10		7308297	139055725	32	5113											
LGI3	203190	mdanderson.org	37	chr8	22005965	22005965	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctccgagaagcgggtacccTcccagcgcaggatcttggag	13	14	1	1	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_139278	exon8	c.A1355G	p.E452G	GTACCCTCCCAGC		46	3	0.07	62	1	0.0161290323				0	0					C	22005965	T	C	22005965	3	2	73	1	0	0	0	0	1	0	0	0	8792	1551	54	4	295	4	LGI3	8	22005965	Missense_Mutation	SNP	T	TCGA-2G-AALW-01A-11D-A42Y-10	14697668	22005965	124358057	33	5114											
PHF20L1	51105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	133849987	133849987	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttgtgttggcaacacagcGtgtgcatggggctgctggag	17	8	0	0	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_016018	exon17	c.G2122A	p.V708M	CACAGCGTGTGCA		49	15	0.31	67	0	0				13	3	0.23				A	133849987	G	A	133849987	3	1	73	1	0	0	0	0	1	0	0	0	11879	1145	40	1	2280	1	PHF20L1	8	133849987	Missense_Mutation	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10	111844022	133849987	12514035	34	5115											
PLEC	5339	mdanderson.org	37	chr8	144992599	144992599	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgggcatccagcagccgcAgggcctcctcagtagggatc	14	14	1	0	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_201380	exon32	c.T11801A	p.L3934Q	AGCCGCAGGGCCT		31	3	0.1	18	0	0				72	0	0				T	144992599	A	T	144992599	3	4	73	1	0	0	0	0	1	0	0	0	12099	188	7	5	2257	5	PLEC	8	144992599	Missense_Mutation	SNP	A	TCGA-2G-AALW-01A-11D-A42Y-10	11142612	144992599	1371423	35	5116											
PARP10	84875	mdanderson.org	37	chr8	145058391	145058391	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctacctcttcaaggcctGtgtccaacgtggctgtggcc	10	14	3	0	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_032789	exon6	c.C1667A	p.T556K	AGGCCTGTGTCCA		51	3	0.06	65	0	0				59	0	0				T	145058391	G	T	145058391	3	4	73	1	0	0	0	0	1	0	0	0	11501	1377	48	3	1434	3	PARP10	8	145058391	Missense_Mutation	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10	65792	145058391	1305631	36	5117											
FAM22G	441457	mdanderson.org	37	chr9	99699464	99699464	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccaggcccccgaggccagcAgagaccaaggtccctgagga	13	16	0	2	rs2986890		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_001045477	exon5	c.A1101G	p.A367A	GCCAGCAGAGACC		101	5	0.05	89	2	0.0224719101				0	0					G	99699464	A	G	99699464	2	3	73	1	0	0	0	0	0	0	0	1	5577	175	7	4		4	FAM22G	9	99699464	Silent	SNP	A	TCGA-2G-AALW-01A-11D-A42Y-10		99699464	41513967	37	5118											
PKN3	29941	hgsc.bcm.edu;mdanderson.org	37	chr9	131469216	131469216	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctacagcatcgactgcacGttgaggcagctgtggctgag	14	10	0	2	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_013355	exon5	c.G565T	p.V189F	CTGCACGTTGAGG		60	4	0.07	41	0	0				7	0	0				T	131469216	G	T	131469216	3	4	73	1	0	0	0	0	1	0	0	0	12028	1145	40	1	583	1	PKN3	9	131469216	Missense_Mutation	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10	31769752	131469216	9744215	38	5119											
NUP188	23511	broad.mit.edu;mdanderson.org	37	chr9	131763859	131763859	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agctgtgtgaggtagacgagGatggtgactcctggctgcag	17	7	0	3	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	NUP188	NM_015354	exon35	c.G3895T	p.D1299Y	GACGAGGATGGTG		102	5	0.05	87	0	0		140		65	1	0.02				T	131763859	G	T	131763859	3	4	73	1	0	0	0	0	1	0	0	0	10805	1174	41	3	4033	3	NUP188	9	131763859	Missense_Mutation	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10	294643	131763859	9449572	39	5120											
ECD	11319	broad.mit.edu;mdanderson.org	37	chr10	74899094	74899094	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gctctgctcccttgtgggttGagactttggatatgaaagct	12	8	1	2	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	ECD	NM_001135752	exon12	c.C1493A	p.S498X	TGGGTTGAGACTT		66	5	0.08	67	0	0		50		39	0	0				T	74899094	G	T	74899094	4	4	73	1	0	0	0	0	0	1	0	0	4914	1294	45	3	556	3	ECD	10	74899094	Nonsense_Mutation	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10		74899094	60635653	40	5121											
IFIT5	24138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	91178125	91178125	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgctttcaggaatttcaccGtaaatcagaaaatactgcca	6	11	3	1	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_012420	exon2	c.G1169C	p.R390P	TTCACCGTAAATC		115	43	0.37	157	0	0				25	10	0.4				C	91178125	G	C	91178125	3	2	73	1	0	0	0	0	1	0	0	0	7568	1145	40	5	1175	5	IFIT5	10	91178125	Missense_Mutation	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10	16279031	91178125	44356622	41	5122											
LOXL4	84171	hgsc.bcm.edu;mdanderson.org	37	chr10	100017443	100017443	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atgttagggacattgcacctGacagcagcatcattctcatg	9	10	2	1	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_032211	exon8	c.C1224A	p.V408V	GCACCTGACAGCA		66	4	0.06	55	0	0				12	0	0				T	100017443	G	T	100017443	2	4	73	1	0	0	0	0	0	0	0	1	8946	1277	45	3		3	LOXL4	10	100017443	Silent	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10	8839318	100017443	35517304	42	5123											
RPS6KA4	8986	mdanderson.org	37	chr11	64136051	64136051	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagagcggccaggagttcGcagtcaagatcctcagtcgc	13	13	2	2	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_003942	exon11	c.G1312T	p.A438S	GAGTTCGCAGTCA		25	3	0.12	33	0	0				29	0	0				T	64136051	G	T	64136051	3	4	73	1	0	0	0	0	1	0	0	0	13704	1087	38	1	1354	1	RPS6KA4	11	64136051	Missense_Mutation	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10		64136051	70870465	43	5124											
CARD17	440068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	104971361	104971361	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaaagctcgggccttatcCataactgtagcattttcaca	7	11	1	0	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	CARD17,bladder,carcinoma,0,1	CARD17	NM_001007232	exon2	c.G153A	p.M51I	CTTATCCATAACT		124	44	0.35	151	1	0.0066225166		0	1	0	0					T	104971361	C	T	104971361	3	4	73	1	0	0	0	0	1	0	0	0	2666	594	21	3	187	3	CARD17	11	104971361	Missense_Mutation	SNP	C	TCGA-2G-AALW-01A-11D-A42Y-10	40835310	104971361	30035155	44	5125											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	49444817	49444817	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gatggttccccagggggaggGaacaagggcagctcctcagg	17	10	1	0	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_003482	exon10	c.C2649A	p.F883L	GGGAGGGAACAAG		170	43	0.25	135	0	0				3	0	0				T	49444817	G	T	49444817	3	4	73	1	0	0	0	0	1	0	0	0	9668	1165	41	3	14144	3	MLL2	12	49444817	Missense_Mutation	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10		49444817	84407078	45	5126											
ATF7	11016	mdanderson.org	37	chr12	53918385	53918385	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gagaagtgagttcttcggccTtcttctctagggaggacacc	12	10	3	2	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_006856	exon10	c.A1088T	p.K363M	TCGGCCTTCTTCT		59	3	0.05	69	0	0				15	0	0				A	53918385	T	A	53918385	3	1	73	1	0	0	0	0	1	0	0	0	1085	1609	56	5	375	5	ATF7	12	53918385	Missense_Mutation	SNP	T	TCGA-2G-AALW-01A-11D-A42Y-10	4473568	53918385	79933510	46	5127											
OAS3	4940	mdanderson.org	37	chr12	113376380	113376380	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcgctggacaggttcgtGgccagaaggctgcagccgcg	17	12	0	1	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_006187	exon1	c.G45T	p.V15V	GTTCGTGGCCAGA		36	3	0.08	27	0	0				18	0	0				T	113376380	G	T	113376380	2	4	73	1	0	0	0	0	0	0	0	1	10848	1335	47	3		3	OAS3	12	113376380	Silent	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10	59457995	113376380	20475515	47	5128											
RIMBP2	23504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	130919365	130919365	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	agagtcataggcgtcctcctCgtctgaggcggcgtactgcc	13	13	2	2	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_015347	exon11	c.G2116A	p.E706K	CCTCCTCGTCTGA		81	27	0.33	58	0	0				1	1	1				T	130919365	C	T	130919365	3	4	73	1	0	0	0	0	1	0	0	0	13412	893	31	1	1078	1	RIMBP2	12	130919365	Missense_Mutation	SNP	C	TCGA-2G-AALW-01A-11D-A42Y-10	17542985	130919365	2932530	48	5129											
IRF9	10379	mdanderson.org	37	chr14	24634055	24634055	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttcgtgcagcgcctttgCcccatccccatctcctggaa	7	18	2	0	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_006084	exon7	c.C882T	p.C294C	CCTTTGCCCCATC		31	3	0.1	29	0	0				118	0	0				T	24634055	C	T	24634055	2	4	73	1	0	0	0	0	0	0	0	1	7880	747	26	2		2	IRF9	14	24634055	Silent	SNP	C	TCGA-2G-AALW-01A-11D-A42Y-10		24634055	82715485	49	5130											
E4F1	1877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	2284682	2284682	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaagggctcactggtgcgGcacgtgcgacaccacacagg	15	12	1	1	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_004424	exon11	c.G1692A	p.R564R	GGTGCGGCACGTG		168	40	0.24	104	0	0				36	7	0.19				A	2284682	G	A	2284682	2	1	73	1	0	0	0	0	0	0	0	1	4900	1190	42	2		2	E4F1	16	2284682	Silent	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10		2284682	88070071	50	5131											
MEFV	4210	mdanderson.org	37	chr16	3304520	3304520	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccggggcttctcccgcccGgcagggccgggctccgggtc	18	17	1	0	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_000243	exon2	c.C548T	p.P183L	CCGCCCGGCAGGG		42	3	0.07	24	0	0				1	0	0				A	3304520	G	A	3304520	3	1	73	1	0	0	0	0	1	0	0	0	9508	1116	39	1	1833	1	MEFV	16	3304520	Missense_Mutation	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10	1019838	3304520	87050233	51	5132											
NKD1	85407	mdanderson.org	37	chr16	50659443	50659443	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gaggacagccggcaggagtgGaccttcaccctgtatgactt	13	11	1	1	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_033119	exon6	c.G414T	p.W138C	GGAGTGGACCTTC		48	3	0.06	42	0	0				2	0	0				T	50659443	G	T	50659443	3	4	73	1	0	0	0	0	1	0	0	0	10487	1183	41	3	436	3	NKD1	16	50659443	Missense_Mutation	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10	47354923	50659443	39695310	52	5133											
VPS53	55275	mdanderson.org	37	chr17	531342	531342	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	actcacatcttggttttcttGaaaaagtaccagatactctg	6	9	4	2	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_001128159	exon9	c.C817A	p.Q273K	TTTCTTGAAAAAG		92	4	0.04	49	0	0				17	0	0				T	531342	G	T	531342	3	4	73	1	0	0	0	0	1	0	0	0	17274	1299	45	3	1752	3	VPS53	17	531342	Missense_Mutation	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10		531342	80663868	53	5134											
TAOK1	57551	mdanderson.org	37	chr17	27844489	27844489	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggagctaaatgaaaaccagAgtacccccaaaaaagaaaaa	7	8	0	3	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_020791	exon16	c.A1723G	p.S575G	AACCAGAGTACCC		61	3	0.05	57	0	0				7	0	0				G	27844489	A	G	27844489	3	3	73	1	0	0	0	0	1	0	0	0	15603	304	11	4	1781	4	TAOK1	17	27844489	Missense_Mutation	SNP	A	TCGA-2G-AALW-01A-11D-A42Y-10	27313147	27844489	53350721	54	5135											
MYCBPAP	84073	broad.mit.edu	37	chr17	48585969	48585969	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcggccgttggctggcgggTgcggcgcagcctcggtgtct	20	12	1	0	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	MYCBPAP	NM_032133	exon1	c.T63G	p.G21G	GGCGGGTGCGGCG		168	50	0.3	120	32	0.2666666667		135		2	0	0				G	48585969	T	G	48585969	2	3	73	1	0	0	0	0	0	0	0	1	10066	1683	59	4		4	MYCBPAP	17	48585969	Silent	SNP	T	TCGA-2G-AALW-01A-11D-A42Y-10	20741480	48585969	32609241	55	5136											
LINGO3	645191	mdanderson.org	37	chr19	2291582	2291582	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgggttcaggcagcggatgCggttgcggctgagctccagc	17	12	1	1	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_001101391	exon2	c.G194A	p.R65H	CGGATGCGGTTGC		17	2	0.12	13	0	0				2	0	0				T	2291582	C	T	2291582	3	4	73	1	0	0	0	0	1	0	0	0	8856	768	27	1	1588	1	LINGO3	19	2291582	Missense_Mutation	SNP	C	TCGA-2G-AALW-01A-11D-A42Y-10		2291582	56837401	56	5137											
DOCK6	57572	mdanderson.org	37	chr19	11353781	11353781	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agggacgacgggcgcctcatGtcagccaggaacttgaagag	15	10	2	2	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_020812	exon13	c.C1434A	p.D478E	CCTCATGTCAGCC		48	3	0.06	73	0	0				15	0	0				T	11353781	G	T	11353781	3	4	73	1	0	0	0	0	1	0	0	0	4718	1368	48	3	4853	3	DOCK6	19	11353781	Missense_Mutation	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10	9062199	11353781	47775202	57	5138											
KLK5	25818	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	51453209	51453209	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaacagcgcggcctgccaCggctgggtgtgcatatcgca	14	13	0	0	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_012427	exon3	c.G237T	p.P79P	CTGCCACGGCTGG		47	21	0.45	68	0	0				0	0					A	51453209	C	A	51453209	2	1	73	1	0	0	0	0	0	0	0	1	8449	523	19	1		1	KLK5	19	51453209	Silent	SNP	C	TCGA-2G-AALW-01A-11D-A42Y-10	40099428	51453209	7675774	58	5139											
NCAM2	4685	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	22664454	22664454	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgttagcaaacaataaccTgcagattctcaacatcaata	4	9	2	1	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	NCAM2	NM_004540	exon5	c.T512A	p.L171Q	ATAACCTGCAGAT		159	28	0.18	125	1	0.008		220		0	0					A	22664454	T	A	22664454	3	1	73	1	0	0	0	0	1	0	0	0	10249	1580	55	5	530	5	NCAM2	21	22664454	Missense_Mutation	SNP	T	TCGA-2G-AALW-01A-11D-A42Y-10		22664454	25465441	59	5140											
COL18A1	80781	broad.mit.edu	37	chr21	46876429	46876430	+	Frame_Shift_Ins	INS	-	-	C													gctcggggctgaccccgaggINScccccgccggtcgctgcctg					novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	COL18A1	.	.	.	.	CCCGAGGCCCCCG		74	4	0.05	37	0	0		129		1	0	0				C	46876430	-	C	46876429	7	5	73	1	0	1	1	0	0	0	0	0	3698	1203	42	0	1101	0	COL18A1	21	46876429	Frame_Shift_Ins	INS	-	TCGA-2G-AALW-01A-11D-A42Y-10	24211975	46876429	1253466	60	5141											
MORC2	22880	mdanderson.org	37	chr22	31337530	31337530	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggcataggcacggaacgaGcgccgctctggcttcctgga	15	13	1	0	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_014941	exon10	c.C528A	p.R176R	GAACGAGCGCCGC		53	3	0.06	59	0	0				37	0	0				T	31337530	G	T	31337530	2	4	73	1	0	0	0	0	0	0	0	1	9750	958	34	2		2	MORC2	22	31337530	Silent	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10		31337530	19967036	61	5142											
BAIAP2L2	80115	mdanderson.org	37	chr22	38503888	38503888	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtcagagttcaagtgccGctgggtgtcagacatctgca	13	10	4	2	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_025045	exon4	c.C247A	p.R83R	AGTGCCGCTGGGT		51	3	0.06	65	0	0				38	0	0				T	38503888	G	T	38503888	2	4	73	1	0	0	0	0	0	0	0	1	1301	1086	38	1		1	BAIAP2L2	22	38503888	Silent	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10	7166358	38503888	12800678	62	5143											
TLR7	51284	broad.mit.edu;bcgsc.ca	37	chrX	12903721	12903721	+	Frame_Shift_Del	DEL	A	A	-													ttggggctagatggtttcctAaaactctgccctgtgatgtc					novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	TLR7	NM_016562	exon3	c.94delA	p.K32fs	TTTCCTAAAACTC		369	67	0.18	272	0	0		125		7	0	0				-	12903721	A	-	12903721	7	5	73	1	0	1	0	1	0	0	0	0	16015	363	13	0	100	0	TLR7	23	12903721	Frame_Shift_Del	DEL	A	TCGA-2G-AALW-01A-11D-A42Y-10		12903721	142366839	63	5144											
CYLC1	1538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	83128817	83128817	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggacacaaagaagtacccAgagtctactgatactgaatc	8	9	1	4	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_021118	exon4	c.A1101G	p.P367P	GTACCCAGAGTCT		136	64	0.47	80	0	0				0	0					G	83128817	A	G	83128817	2	3	73	1	0	0	0	0	0	0	0	1	4164	175	7	4		4	CYLC1	23	83128817	Silent	SNP	A	TCGA-2G-AALW-01A-11D-A42Y-10	70225096	83128817	72141743	64	5145											
RHOXF1	158800	mdanderson.org	37	chrX	119249677	119249677	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccaacatggccttctgcGcttgatgctgcccccagctg	11	15	1	1	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_139282	exon1	c.C96A	p.S32R	TTCTGCGCTTGAT		46	3	0.07	38	0	0				4	0	0				T	119249677	G	T	119249677	3	4	73	1	0	0	0	0	1	0	0	0	13396	1078	38	1	470	1	RHOXF1	23	119249677	Missense_Mutation	SNP	G	TCGA-2G-AALW-01A-11D-A42Y-10	36120860	119249677	36020883	65	5146											
GPC3	2719	broad.mit.edu	37	chrX	133119396	133119396	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggcgtccggcggcggcggCgggggctgcgcctgtcccgg	22	14	0	0	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	GPC3	NM_001164617	exon1	c.G81C	p.P27P	CGGCGGCGGGGGC		250	5	0.02	135	1	0.0074074074		88		673	5	0.01				G	133119396	C	G	133119396	2	3	73	1	0	0	0	0	0	0	0	1	6638	755	27	5		5	GPC3	23	133119396	Silent	SNP	C	TCGA-2G-AALW-01A-11D-A42Y-10	13869719	133119396	22151164	66	5147											
UTY	7404	mdanderson.org	37	chrY	15478190	15478190	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gccagaattaggatctgcctCcaaagacttttggagatact	9	9	1	3	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_001258259	exon10	c.G823T	p.E275X	CTGCCTCCAAAGA		43	3	0.07	253	1	0.0039525692				4	0	0				A	15478190	C	A	15478190	4	1	73	1	0	0	0	0	0	1	0	0	17166	864	30	3	3559	3	UTY	24	15478190	Nonsense_Mutation	SNP	C	TCGA-2G-AALW-01A-11D-A42Y-10		15478190	43895376	67	5148											
CHD5	26038	mdanderson.org	37	chr1	6194211	6194211	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaagatgagcacacggtGcccctcatcccgcagtttct	11	13	2	3	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_015557	exon20	c.C3121A	p.H1041N	CACGGTGCCCCTC		34	3	0.09	39	0	0				0	0					T	6194211	G	T	6194211	3	4	74	1	0	0	0	0	1	0	0	0	3350	1319	46	2	2831	2	CHD5	1	6194211	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10		6194211	243056410	1	5149											
SLC45A1	50651	mdanderson.org	37	chr1	8390578	8390578	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagccccatctcgccgcccaGccccctcacgcccaagtacg	7	23	2	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001080397	exon4	c.G1025A	p.S342N	CGCCCAGCCCCCT		75	4	0.05	59	0	0				3	0	0				A	8390578	G	A	8390578	3	1	74	1	0	0	0	0	1	0	0	0	14694	971	34	2	1039	2	SLC45A1	1	8390578	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	2196367	8390578	240860043	2	5150											
EFHD2	79180	mdanderson.org	37	chr1	15736569	15736569	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgggctgaacggggcagcGgcggcggcggcgggggcacc	22	14	0	1	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_024329	exon1	c.G102A	p.A34A	GGCAGCGGCGGCG		19	2	0.11	15	0	0				0	0					A	15736569	G	A	15736569	2	1	74	1	0	0	0	0	0	0	0	1	4975	1103	39	1		1	EFHD2	1	15736569	Silent	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	7345991	15736569	233514052	3	5151											
EPHA2	1969	bcgsc.ca	37	chr1	16462158	16462158	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgggagttaccttcttgcGgtaagtgacctcgtacttcc	10	11	2	1	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	EPHA2	NM_004431	exon6	c.C1420A	p.R474S	TCTTGCGGTAAGT		56	4	0.07	49	0	0		102		34	0	0				T	16462158	G	T	16462158	3	4	74	1	0	0	0	0	1	0	0	0	5195	1116	39	1	1558	1	EPHA2	1	16462158	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	725589	16462158	232788463	4	5152											
SERINC2	347735	broad.mit.edu	37	chr1	31897662	31897662	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cggccttcttcttctttttcAccctgctcatgctctgcgtg	7	15	6	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	SERINC2	NM_001199038	exon4	c.A361C	p.T121P	TTTTTCACCCTGC		72	12	0.17	75	8	0.1066666667		44		170	24	0.14				C	31897662	A	C	31897662	3	2	74	1	0	0	0	0	1	0	0	0	14133	159	6	4	344	4	SERINC2	1	31897662	Missense_Mutation	SNP	A	TCGA-2G-AALX-01A-11D-A42Y-10	15435504	31897662	217352959	5	5153											
SPOCD1	90853	mdanderson.org	37	chr1	32259490	32259490	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctagcagctcattcgaggGctcccagtctgcaaatagca	10	13	2	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_144569	exon12	c.C2392A	p.P798T	TCGAGGGCTCCCA		38	3	0.08	39	0	0				4	0	0				T	32259490	G	T	32259490	3	4	74	1	0	0	0	0	1	0	0	0	15133	1203	42	2	1278	2	SPOCD1	1	32259490	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	361828	32259490	216991131	6	5154											
S100PBP	64766	mdanderson.org	37	chr1	33295580	33295580	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaggactaatgttccgacGttttcacagtcaaatctaga	7	9	4	1	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_022753	exon5	c.G936T	p.T312T	TCCGACGTTTTCA		44	3	0.07	62	0	0				36	0	0				T	33295580	G	T	33295580	2	4	74	1	0	0	0	0	0	0	0	1	13842	1132	40	1		1	S100PBP	1	33295580	Silent	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	1036090	33295580	215955041	7	5155											
CLCC1	23155	broad.mit.edu	37	chr1	109492518	109492518	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acaagtcaggactgacatccTtttcccctgaaataccatat	5	12	1	2	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	CLCC1	NM_001048210	exon3	c.A155G	p.K52R	ACATCCTTTTCCC		541	5	0.01	418	1	0.0023923445		55		40	0	0				C	109492518	T	C	109492518	3	2	74	1	0	0	0	0	1	0	0	0	3483	1609	56	4	1536	4	CLCC1	1	109492518	Missense_Mutation	SNP	T	TCGA-2G-AALX-01A-11D-A42Y-10	76196938	109492518	139758103	8	5156											
RGS4	5999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	163043412	163043412	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagtccaggcaaccaaagaGgtaggttttttatggataca	10	7	1	1	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001102445	exon5	c.G669A	p.E223E	CAAAGAGGTAGGT		133	31	0.23	114	0	0				17	6	0.35				A	163043412	G	A	163043412	2	1	74	1	0	0	0	0	0	0	0	1	13356	1014	35	3		3	RGS4	1	163043412	Silent	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	53550894	163043412	86207209	9	5157											
ATP2B4	493	hgsc.bcm.edu;broad.mit.edu	37	chr1	203667380	203667380	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagactttcttagaattaGtgtgggaagctcttcaagat	9	7	3	3	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001001396	exon3	c.G289T	p.V97L	GAATTAGTGTGGG		98	5	0.05	93	0	0				27	0	0				T	203667380	G	T	203667380	3	4	74	1	0	0	0	0	1	0	0	0	1141	1029	36	3	295	3	ATP2B4	1	203667380	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	40623968	203667380	45583241	10	5158											
SNX17	9784	mdanderson.org	37	chr2	27598736	27598736	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccattgcccagtggaagcacGagcagcccaggccggggccg	15	15	0	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_014748	exon11	c.G1002T	p.T334T	AAGCACGAGCAGC		36	3	0.08	24	0	0				477	1	0				T	27598736	G	T	27598736	2	4	74	1	0	0	0	0	0	0	0	1	14941	1045	37	1		1	SNX17	2	27598736	Silent	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10		27598736	215600637	11	5159											
STEAP3	55240	mdanderson.org	37	chr2	120005329	120005329	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgccatgggcttcatgccCgtggacatgggatccctggc	13	14	1	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_182915	exon4	c.C597T	p.P199P	CATGCCCGTGGAC		20	2	0.1	26	0	0				22	0	0				T	120005329	C	T	120005329	2	4	74	1	0	0	0	0	0	0	0	1	15334	639	23	1		1	STEAP3	2	120005329	Silent	SNP	C	TCGA-2G-AALX-01A-11D-A42Y-10	92406593	120005329	123194044	12	5160											
SPEG	10290	mdanderson.org	37	chr2	220313115	220313115	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcttcgaggagcgacggcGcagcctggagcgcagcgact	16	12	1	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_005876	exon4	c.G1235A	p.R412H	GACGGCGCAGCCT		19	2	0.11	15	0	0				9	0	0				A	220313115	G	A	220313115	3	1	74	1	0	0	0	0	1	0	0	0	15091	1087	38	1	1249	1	SPEG	2	220313115	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	100307786	220313115	22886258	13	5161											
ALPPL2	251	mdanderson.org	37	chr2	233271628	233271628	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	caggggccctgggtgctgctCctgctgggcctgaggctaca	16	13	0	1	rs61730279	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_031313	exon1	c.C24G	p.L8L	GCTGCTCCTGCTG		43	4	0.09	66	1	0.0151515152				0	0					G	233271628	C	G	233271628	2	3	74	1	0	0	0	0	0	0	0	1	545	842	30	5		5	ALPPL2	2	233271628	Silent	SNP	C	TCGA-2G-AALX-01A-11D-A42Y-10	12958513	233271628	9927745	14	5162											
SCN11A	11280	mdanderson.org	37	chr3	38986945	38986945	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgctgtttttagcaggccCtgtagccatgaacacgcagt	11	10	0	1	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_014139	exon3	c.G445T	p.G149W	CAGGCCCTGTAGC		53	3	0.06	61	0	0				0	0					A	38986945	C	A	38986945	3	1	74	1	0	0	0	0	1	0	0	0	13966	681	24	3	5026	3	SCN11A	3	38986945	Missense_Mutation	SNP	C	TCGA-2G-AALX-01A-11D-A42Y-10		38986945	159035485	15	5163											
CCR9	10803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	45943034	45943034	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agaagtcttccaagcacaaaGccctaaaagtgaccatcact	6	12	2	2	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_031200	exon3	c.G754A	p.A252T	CACAAAGCCCTAA		83	24	0.29	92	0	0				0	0					A	45943034	G	A	45943034	3	1	74	1	0	0	0	0	1	0	0	0	2970	971	34	2	760	2	CCR9	3	45943034	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	6956089	45943034	152079396	16	5164											
PLXNB1	5364	mdanderson.org	37	chr3	48454325	48454325	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgaggaaggggatgccgctGcccaggaggtcactggtgag	18	9	1	1	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001130082	exon25	c.C4680A	p.G1560G	GCCGCTGCCCAGG		34	3	0.09	39	0	0				59	0	0				T	48454325	G	T	48454325	2	4	74	1	0	0	0	0	0	0	0	1	12170	1306	46	2		2	PLXNB1	3	48454325	Silent	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	2511291	48454325	149568105	17	5165											
CNTN3	5067	mdanderson.org	37	chr3	74548917	74548917	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttctttgataaatacaggGccttgtaagagaagctcacc	10	8	2	2	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_020872	exon2	c.C75A	p.G25G	TACAGGGCCTTGT		45	3	0.07	58	0	0				5	0	0				T	74548917	G	T	74548917	2	4	74	1	0	0	0	0	0	0	0	1	3665	1190	42	2		2	CNTN3	3	74548917	Silent	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	26094592	74548917	123473513	18	5166											
ROBO1	6091	mdanderson.org	37	chr3	78706359	78706359	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagggaatgaccacggaaaAggtggaaccatccactgttt	11	8	0	1	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_002941	exon18	c.T2503C	p.F835L	CGGAAAAGGTGGA		45	4	0.09	67	0	0				55	0	0				G	78706359	A	G	78706359	3	3	74	1	0	0	0	0	1	0	0	0	13564	72	3	4	2508	4	ROBO1	3	78706359	Missense_Mutation	SNP	A	TCGA-2G-AALX-01A-11D-A42Y-10	4157442	78706359	119316071	19	5167											
CLDN18	51208	mdanderson.org	37	chr3	137742658	137742658	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccgggatcatgttcattGtctcaggtaaacacagagcc	9	12	3	1	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_016369	exon2	c.G379T	p.V127F	TTCATTGTCTCAG		49	3	0.06	57	0	0				4	0	0				T	137742658	G	T	137742658	3	4	74	1	0	0	0	0	1	0	0	0	3502	1377	48	3	609	3	CLDN18	3	137742658	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	59036299	137742658	60279772	20	5168											
MUC4	4585	mdanderson.org	37	chr3	195509308	195509308	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tggcgtgacctgtggatgctGaggaagtgtcggtgacagga	18	6	0	3	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_018406	exon2	c.C9143T	p.S3048L	GATGCTGAGGAAG		115	5	0.04	33	1	0.0303030303				0	0					A	195509308	G	A	195509308	3	1	74	1	0	0	0	0	1	0	0	0	10025	1294	45	3		3	MUC4	3	195509308	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	57766650	195509308	2513122	21	5169											
KIAA1109	84162	mdanderson.org	37	chr4	123283210	123283210	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atttcttggactggaagaaaGattgatccagtaggtgttga	12	4	1	4	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_015312	exon84	c.G14826T	p.K4942N	AAGAAAGATTGAT		31	3	0.1	36	0	0				95	0	0				T	123283210	G	T	123283210	3	4	74	1	0	0	0	0	1	0	0	0	8249	933	33	3	15160	3	KIAA1109	4	123283210	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10		123283210	67871066	22	5170											
LRBA	987	bcgsc.ca	37	chr4	151236743	151236743	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgatttccactggcagctGgtatggctggtcttgtacag	12	9	1	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	LRBA	NM_006726	exon52	c.C7696A	p.Q2566K	GCAGCTGGTATGG		51	4	0.08	36	0	0		253		35	0	0				T	151236743	G	T	151236743	3	4	74	1	0	0	0	0	1	0	0	0	8975	1357	47	3	923	3	LRBA	4	151236743	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	27953533	151236743	39917533	23	5171											
PCDHB10	56126	mdanderson.org	37	chr5	140573922	140573922	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacggcgactcgggccagaaCgcctggctgtcgtaccagct	14	14	0	1	rs376773467	bycluster	TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_018930	exon1	c.C1797T	p.N599N	CCAGAACGCCTGG		11	2	0.18	10	0	0				0	0					T	140573922	C	T	140573922	2	4	74	1	0	0	0	0	0	0	0	1	11581	535	19	1		1	PCDHB10	5	140573922	Silent	SNP	C	TCGA-2G-AALX-01A-11D-A42Y-10		140573922	40341338	24	5172											
DBN1	1627	hgsc.bcm.edu	37	chr5	176884449	176884449	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	caccgctaatcaccaccctcGaagccctcctcctcttctgg	5	20	3	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_080881	exon15	c.C1941A	p.F647L	ACCCTCGAAGCCC		84	4	0.05	80	0	0				411	2	0				T	176884449	G	T	176884449	3	4	74	1	0	0	0	0	1	0	0	0	4276	1049	37	1	18	1	DBN1	5	176884449	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	36310527	176884449	4030811	25	5173											
GRM4	2914	mdanderson.org	37	chr6	34026771	34026771	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgtacggacatcctcttgGggaggatcgtgacagcaccc	12	13	1	1	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	GRM4_ENST00000374181,NS,malignant_melanoma,-1,6	GRM4_ENST00000374181	NM_001256811	exon5	c.C1007A	p.P336H	CTCTTGGGGAGGA		36	3	0.08	20	0	0		-1	6	1	0	0				T	34026771	G	T	34026771	3	4	74	1	0	0	0	0	1	0	0	0	6839	1232	43	3	1759	3	GRM4	6	34026771	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10		34026771	137088296	26	5174											
ETV7	51513	mdanderson.org	37	chr6	36339272	36339272	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggccgaagttgctggtaaGccctgggtctggtggctgca	17	9	1	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_016135	exon5	c.C499A	p.L167I	TGGTAAGCCCTGG		47	3	0.06	32	0	0				11	0	0				T	36339272	G	T	36339272	3	4	74	1	0	0	0	0	1	0	0	0	5312	971	34	2	542	2	ETV7	6	36339272	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	2312501	36339272	134775795	27	5175											
FOXP4	116113	mdanderson.org	37	chr6	41556457	41556457	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatgcaggtggtgcagcaGctggagatccaggtgtggcc	17	9	0	2	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001012426	exon9	c.G1053T	p.Q351H	GCAGCAGCTGGAG		46	4	0.09	40	0	0				194	0	0				T	41556457	G	T	41556457	3	4	74	1	0	0	0	0	1	0	0	0	6062	962	34	2	1083	2	FOXP4	6	41556457	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	5217185	41556457	129558610	28	5176											
ECT2L	345930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	139223666	139223666	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	atgcatttattcttcagggtCcaaaatataaatggatttgt	7	5	2	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001195037	exon21	c.C2617T	p.P873S	CAGGGTCCAAAAT		45	14	0.31	47	0	0				0	0					T	139223666	C	T	139223666	3	4	74	1	0	0	0	0	1	0	0	0	4928	855	30	3	2695	3	ECT2L	6	139223666	Missense_Mutation	SNP	C	TCGA-2G-AALX-01A-11D-A42Y-10	97667209	139223666	31891401	29	5177											
KIF25	3834	mdanderson.org	37	chr6	168443364	168443364	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgccccgtaccggaacaGcaggctcacccacctccttc	7	20	1	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_030615	exon8	c.G953T	p.S318I	GGAACAGCAGGCT		40	3	0.08	35	0	0				1	0	0				T	168443364	G	T	168443364	3	4	74	1	0	0	0	0	1	0	0	0	8334	971	34	2	979	2	KIF25	6	168443364	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	29219698	168443364	2671703	30	5178											
LAPTM4B	55353	mdanderson.org	37	chr8	98788291	98788291	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaacagctgctgcttgtgCtgccatgtccgcaccggcac	10	16	0	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_018407	exon1	c.C327A	p.C109X	CTTGTGCTGCCAT		44	3	0.07	20	0	0				170	0	0				A	98788291	C	A	98788291	4	1	74	1	0	0	0	0	0	1	0	0	8663	805	28	2	329	2	LAPTM4B	8	98788291	Nonsense_Mutation	SNP	C	TCGA-2G-AALX-01A-11D-A42Y-10		98788291	47575731	31	5179											
BAI1	575	mdanderson.org	37	chr8	143614695	143614695	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgtggtgctgccgctgctGgcgctgacctggatgtcggc	17	12	0	1	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001702	exon24	c.G3438T	p.L1146L	GCTGCTGGCGCTG		37	3	0.08	22	0	0				8	0	0				T	143614695	G	T	143614695	2	4	74	1	0	0	0	0	0	0	0	1	1296	1335	47	3		3	BAI1	8	143614695	Silent	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	44826404	143614695	2749327	32	5180											
JAK2	3717	mdanderson.org	37	chr9	5064922	5064922	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taagggaagctttgtctttcGtgtcattaattgatggatat	10	4	2	1	rs375678155	alternate_allele	TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_004972	exon9	c.G1096T	p.V366L	TCTTTCGTGTCAT		40	3	0.08	33	0	0				7	0	0				T	5064922	G	T	5064922	3	4	74	1	0	0	0	0	1	0	0	0	7981	1145	40	1	1122	1	JAK2	9	5064922	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10		5064922	136148509	33	5181											
ACO1	48	mdanderson.org	37	chr9	32431768	32431768	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaagatatctggccgactaGagacgagatccaggcagtgg	14	8	1	3	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_002197	exon15	c.G1778T	p.R593I	CGACTAGAGACGA		49	3	0.06	57	0	0				34	0	0				T	32431768	G	T	32431768	3	4	74	1	0	0	0	0	1	0	0	0	146	942	33	3	1832	3	ACO1	9	32431768	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	27366846	32431768	108781663	34	5182											
LAMC3	10319	mdanderson.org	37	chr9	133936554	133936554	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctggccagtcggcctgtaCgaccatcccagagagccggg	13	16	0	1	rs138199679		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_006059	exon13	c.C2291T	p.T764M	CCTGTACGACCAT		20	2	0.1	25	0	0	0			68	0	0				T	133936554	C	T	133936554	3	4	74	1	0	0	0	0	1	0	0	0	8654	536	19	1	2341	1	LAMC3	9	133936554	Missense_Mutation	SNP	C	TCGA-2G-AALX-01A-11D-A42Y-10	101504786	133936554	7276877	35	5183											
UNC5B	219699	mdanderson.org	37	chr10	73051501	73051501	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggttcccagcagctcttggGcctgccccgagacccaggga	13	16	1	1	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_170744	exon10	c.G1607T	p.G536V	TCTTGGGCCTGCC		21	3	0.14	33	0	0				48	0	0				T	73051501	G	T	73051501	3	4	74	1	0	0	0	0	1	0	0	0	17051	1203	42	2	1645	2	UNC5B	10	73051501	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10		73051501	62483246	36	5184											
SORBS1	10580	mdanderson.org	37	chr10	97082525	97082525	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catagctcttttcagattctGtgagatctggtcctgctctc	8	11	5	2	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001034956	exon25	c.C2456A	p.T819K	GATTCTGTGAGAT		35	3	0.09	46	0	0				0	0					T	97082525	G	T	97082525	3	4	74	1	0	0	0	0	1	0	0	0	14980	1377	48	3	277	3	SORBS1	10	97082525	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	24031024	97082525	38452222	37	5185											
SEMA4G	57715	mdanderson.org	37	chr10	102743827	102743827	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcgccgaggaactcagccGcatcctggaaaaaaggaagc	11	12	1	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_017893	exon14	c.G2471A	p.R824H	TCAGCCGCATCCT		39	3	0.08	52	0	0				44	0	0				A	102743827	G	A	102743827	3	1	74	1	0	0	0	0	1	0	0	0	14089	1087	38	1	2525	1	SEMA4G	10	102743827	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	5661302	102743827	32790920	38	5186											
TDRD1	56165	mdanderson.org	37	chr10	115971626	115971626	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtctctccctttttcagaGgatgatcagtggtaccgtgc	11	10	3	2	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_198795	exon14	c.G1662T	p.E554D	TTCAGAGGATGAT		51	3	0.06	71	0	0				0	0					T	115971626	G	T	115971626	3	4	74	1	0	0	0	0	1	0	0	0	15788	1014	35	3	1712	3	TDRD1	10	115971626	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	13227799	115971626	19563121	39	5187											
MUC2	4583	mdanderson.org	37	chr11	1093185	1093185	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acaccaaccccaacacccacCggcacacagtccccaacccc	3	24	0	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_002457	exon30	c.C5004T	p.T1668T	ACCCACCGGCACA		13	2	0.15	19	0	0				6	0	0				T	1093185	C	T	1093185	2	4	74	1	0	0	0	0	0	0	0	1	10022	639	23	1		1	MUC2	11	1093185	Silent	SNP	C	TCGA-2G-AALX-01A-11D-A42Y-10		1093185	133913331	40	5188											
ZNF143	7702	hgsc.bcm.edu	37	chr11	9519221	9519221	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttttaattttttcttaaaGgttatggattaaaaagtcac	5	4	3	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_003442	exon10	c.842-1G>T	.	CTTAAAGGTTATG		107	5	0.05	95	0	0				1	0	0				T	9519221	G	T	9519221	5	4	74	1	0	0	0	0	0	0	1	0	17789	1014	35	3	875	3	ZNF143	11	9519221	Splice_Site	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	8426036	9519221	125487295	41	5189											
EIF4G2	1982	broad.mit.edu	37	chr11	10820574	10820574	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttttcccggaaactcttGggttatatcttctttccaag	7	11	3	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	EIF4G2	NM_001172705	exon21	c.C2623A	p.Q875K	ACTCTTGGGTTAT		247	5	0.02	222	1	0.0045045045		89		2448	0	0				T	10820574	G	T	10820574	3	4	74	1	0	0	0	0	1	0	0	0	5065	1357	47	3	108	3	EIF4G2	11	10820574	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	1301353	10820574	124185942	42	5190											
OR4A16	81327	hgsc.bcm.edu	37	chr11	55110715	55110715	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttacagaatttgtcctcctGggcctcactcaagatcctga	8	12	2	3	rs77981146	bycluster;byfrequency;by1000genomes	TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	OR4A16,NS,lymphoid_neoplasm,0,1	OR4A16	NM_001005274	exon1	c.G39A	p.L13L	CCTCCTGGGCCTC		22	3	0.14	28	1	0.0357142857	0.006	0	1	0	0					A	55110715	G	A	55110715	2	1	74	1	0	0	0	0	0	0	0	1	11088	1335	47	3		3	OR4A16	11	55110715	Silent	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	44290141	55110715	79895801	43	5191											
C11orf53	341032	mdanderson.org	37	chr11	111156435	111156435	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagcctgaccctgtgtctGccgatgccctgctgaccttg	11	16	1	2	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_198498	exon4	c.G367T	p.A123S	GTGTCTGCCGATG		28	3	0.11	40	0	0				0	0					T	111156435	G	T	111156435	3	4	74	1	0	0	0	0	1	0	0	0	1653	1319	46	2	377	2	C11orf53	11	111156435	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	56045720	111156435	23850081	44	5192											
PDE3A	0	broad.mit.edu	37	chr12	20522114	20522115	+	RNA	INS	-	-	GCGT													cgagggtggaattgggaagaINSgcgtgcgtgcgtgtgtgtgt					rs138187101	bycluster;by1000genomes	TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	PDE3A	.	.	.	.	GGGAAGAGCGTGC		25	17	0.68	9	0	0		184		13	0	0				GCGT	20522115	-	GCGT	20522114	6	5	74	0	1	1	1	0	0	0	0	0	11683	319	11	0		0	PDE3A	12	20522114	RNA	INS	-	TCGA-2G-AALX-01A-11D-A42Y-10		20522114	113329781	45	5193											
LHX5	64211	mdanderson.org	37	chr12	113907120	113907120	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgctgggcgagatgccttgCgcgcagccggcgcatttcgt	15	13	0	1	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_022363	exon2	c.G204T	p.A68A	GCCTTGCGCGCAG		47	3	0.06	25	0	0				0	0					A	113907120	C	A	113907120	2	1	74	1	0	0	0	0	0	0	0	1	8813	755	27	1		1	LHX5	12	113907120	Silent	SNP	C	TCGA-2G-AALX-01A-11D-A42Y-10	93385006	113907120	19944775	46	5194											
UBAC2	337867	mdanderson.org	37	chr13	99853189	99853189	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accagcaccggctccagtggGctctgtgagtaccggcctcc	12	16	1	1	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001144072	exon1	c.G27T	p.G9G	CAGTGGGCTCTGT		39	3	0.08	36	0	0				77	0	0				T	99853189	G	T	99853189	2	4	74	1	0	0	0	0	0	0	0	1	16895	1190	42	2		2	UBAC2	13	99853189	Silent	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10		99853189	15316689	47	5195											
MYH6	4624	mdanderson.org	37	chr14	23853812	23853812	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgagggcgatctgctcggCctcgtccagccggtgctgca	14	14	1	1	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_002471	exon36	c.G5404A	p.A1802T	GCTCGGCCTCGTC		47	3	0.06	57	0	0				4	0	0				T	23853812	C	T	23853812	3	4	74	1	0	0	0	0	1	0	0	0	10085	739	26	2	431	2	MYH6	14	23853812	Missense_Mutation	SNP	C	TCGA-2G-AALX-01A-11D-A42Y-10		23853812	83495728	48	5196											
TRAF3	7187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	103355943	103355943	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caatgcccccagcacctgtaGttttaagcgctatggctgcg	10	13	0	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_145725	exon8	c.G698A	p.S233N	CCTGTAGTTTTAA		65	11	0.17	72	0	0				16	7	0.44				A	103355943	G	A	103355943	3	1	74	1	0	0	0	0	1	0	0	0	16499	1029	36	3	720	3	TRAF3	14	103355943	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	79502131	103355943	3993597	49	5197											
C15orf52	388115	mdanderson.org	37	chr15	40631802	40631802	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccccccctgctctgcctgccGacggtcctcctggatctcct	8	21	2	0	rs372352300		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_207380	exon3	c.C274T	p.R92W	CCTGCCGACGGTC		47	3	0.06	22	0	0				9	0	0				A	40631802	G	A	40631802	3	1	74	1	0	0	0	0	1	0	0	0	1806	1057	37	1	1366	1	C15orf52	15	40631802	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10		40631802	61899590	50	5198											
DLL4	54567	mdanderson.org	37	chr15	41228737	41228737	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gctttgtgggcagccgctgcGagttccccgtgggcttgccg	16	13	0	0	rs201981567	alternate_allele	TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_019074	exon9	c.G1552T	p.E518X	CGCTGCGAGTTCC		44	3	0.07	29	0	0				25	0	0				T	41228737	G	T	41228737	4	4	74	1	0	0	0	0	0	1	0	0	4596	1059	37	1	1586	1	DLL4	15	41228737	Nonsense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	596935	41228737	61302655	51	5199											
FANCI	55215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	89824446	89824446	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcacccttagttcttcaaaGttgttcttctaaagtcacag	6	10	5	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001113378	exon15	c.G1427A	p.S476N	TTCAAAGTTGTTC		184	50	0.27	143	0	0				42	14	0.33				A	89824446	G	A	89824446	3	1	74	1	0	0	0	0	1	0	0	0	5701	1029	36	3	1481	3	FANCI	15	89824446	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	48595709	89824446	12706946	52	5200											
ZNF205	7755	mdanderson.org	37	chr16	3169647	3169647	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggtgacgcaccggcgcaCgcacacgggcgagaagccct	14	16	0	2	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001042428	exon7	c.C986T	p.T329M	GGCGCACGCACAC		20	2	0.1	27	0	0				70	0	0				T	3169647	C	T	3169647	3	4	74	1	0	0	0	0	1	0	0	0	17821	536	19	1	1008	1	ZNF205	16	3169647	Missense_Mutation	SNP	C	TCGA-2G-AALX-01A-11D-A42Y-10		3169647	87185106	53	5201											
HIRIP3	8479	mdanderson.org	37	chr16	30005069	30005069	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tcgatgggcaccacaggcccGaatgtagcgcttcagcctca	11	14	2	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_003609	exon5	c.C1300T	p.R434W	AGGCCCGAATGTA		30	3	0.1	26	0	0				125	0	0				A	30005069	G	A	30005069	3	1	74	1	0	0	0	0	1	0	0	0	7161	1057	37	1	382	1	HIRIP3	16	30005069	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	26835422	30005069	60349684	54	5202											
PHKB	5257	mdanderson.org	37	chr16	47531349	47531349	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	taaaagcattaatcttccaaGacctgataatgaaactctct	4	9	2	3	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	PHKB_ENST00000323584,NS,carcinoma,0,3	PHKB_ENST00000323584	NM_000293	exon2	c.G116T	p.R39I	TTCCAAGACCTGA		30	3	0.1	39	0	0		0	3	22	0	0				T	47531349	G	T	47531349	3	4	74	1	0	0	0	0	1	0	0	0	11892	942	33	3	181	3	PHKB	16	47531349	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	17526280	47531349	42823404	55	5203											
SPG7	6687	mdanderson.org	37	chr16	89598891	89598891	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctcggcgctgcccgtgtgCggagcctctttaaggaagcc	14	14	1	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	SPG7_ENST00000341316,NS,carcinoma,0,8	SPG7_ENST00000341316	NM_003119	exon9	c.C1171T	p.R391W	CGTGTGCGGAGCC		49	3	0.06	57	0	0		0	8	97	0	0				T	89598891	C	T	89598891	3	4	74	1	0	0	0	0	1	0	0	0	15099	759	27	1	1205	1	SPG7	16	89598891	Missense_Mutation	SNP	C	TCGA-2G-AALX-01A-11D-A42Y-10	42067542	89598891	755862	56	5204											
DNAH2	146754	hgsc.bcm.edu	37	chr17	7637830	7637830	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagataaaggagatgctcaGtgcccaggagactgtggaga	15	7	1	4	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_020877	exon6	c.G782T	p.S261I	TGCTCAGTGCCCA		80	4	0.05	46	0	0				0	0					T	7637830	G	T	7637830	3	4	74	1	0	0	0	0	1	0	0	0	4630	1029	36	3	804	3	DNAH2	17	7637830	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10		7637830	73557380	57	5205											
RASL10B	91608	mdanderson.org	37	chr17	34062225	34062225	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtctccacctaccgggtgGccgtgctgggggcgcgaggt	18	12	1	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_033315	exon2	c.G22T	p.A8S	CGGGTGGCCGTGC		41	3	0.07	32	0	0				18	0	0				T	34062225	G	T	34062225	3	4	74	1	0	0	0	0	1	0	0	0	13131	1203	42	2	24	2	RASL10B	17	34062225	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	26424395	34062225	47132985	58	5206											
IKZF3	22806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	37922278	37922278	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggagtctcttgggcagatgGgcgggggcttgaggagttcg	20	7	1	2	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	IKZF3,NS,neuroblastoma,+1,1	IKZF3	NM_012481	exon8	c.C1295T	p.P432L	CAGATGGGCGGGG		119	37	0.31	79	0	0		1	1	1	0	0				A	37922278	G	A	37922278	3	1	74	1	0	0	0	0	1	0	0	0	7659	1232	43	3	238	3	IKZF3	17	37922278	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	3860053	37922278	43272932	59	5207											
LPIN2	9663	mdanderson.org	37	chr18	2951054	2951054	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaggctgagagtcctaccGtgctgcctgggcccccttgt	12	16	0	1	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_014646	exon4	c.C589T	p.R197X	CCTACCGTGCTGC		50	3	0.06	50	0	0				14	0	0				A	2951054	G	A	2951054	4	1	74	1	0	0	0	0	0	1	0	0	8963	1159	40	1	2169	1	LPIN2	18	2951054	Nonsense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10		2951054	75126194	60	5208											
SMAD7	4092	mdanderson.org	37	chr18	46476633	46476633	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcatccagccctgcccggGccgccgccaccggccccatg	11	22	0	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_005904	exon1	c.C162T	p.G54G	GCCCGGGCCGCCG		12	2	0.17	13	0	0				2	0	0				A	46476633	G	A	46476633	2	1	74	1	0	0	0	0	0	0	0	1	14816	1190	42	2		2	SMAD7	18	46476633	Silent	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	43525579	46476633	31600615	61	5209											
KANK3	256949	mdanderson.org	37	chr19	8387794	8387794	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggctgtctgggagccagGgggtgactcgctctggagag	19	8	2	2	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_198471	exon11	c.C2395A	p.P799T	AGCCAGGGGGTGA		43	3	0.07	28	0	0				48	0	0				T	8387794	G	T	8387794	3	4	74	1	0	0	0	0	1	0	0	0	8021	1232	43	3	74	3	KANK3	19	8387794	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10		8387794	50741189	62	5210											
BRD4	23476	mdanderson.org	37	chr19	15367969	15367969	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccggcatcttggcaaagcGcatttcgaacacatcctggt	10	12	1	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	BRD4_ENST00000263377,NS,carcinoma,0,2	BRD4_ENST00000263377	NM_058243	exon8	c.C1357T	p.R453C	CAAAGCGCATTTC		41	3	0.07	45	0	0		0	2	106	0	0				A	15367969	G	A	15367969	3	1	74	1	0	0	0	0	1	0	0	0	1506	1087	38	1	2798	1	BRD4	19	15367969	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	6980175	15367969	43761014	63	5211											
GRAMD1A	57655	mdanderson.org	37	chr19	35502430	35502430	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcttcctcctcatcttccGcctctggcagaatgcactgc	7	17	3	1	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_020895	exon7	c.G578A	p.R193H	TCTTCCGCCTCTG		43	3	0.07	24	0	0				309	1	0				A	35502430	G	A	35502430	3	1	74	1	0	0	0	0	1	0	0	0	6787	1087	38	1	604	1	GRAMD1A	19	35502430	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	20134461	35502430	23626553	64	5212											
CAPNS1	826	broad.mit.edu	37	chr19	36631958	36631958	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aagggcggcggcggcggcggCgggggaggcgggggcctggg	28	9	0	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	CAPNS1	NM_001749	exon2	c.C45G	p.G15G	CGGCGGCGGGGGA		114	5	0.04	83	1	0.0120481928		19		15	0	0				G	36631958	C	G	36631958	2	3	74	1	0	0	0	0	0	0	0	1	2651	755	27	5		5	CAPNS1	19	36631958	Silent	SNP	C	TCGA-2G-AALX-01A-11D-A42Y-10	1129528	36631958	22497025	65	5213											
HRC	3270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	49657880	49657880	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtgtccatactcagtggaGgcctcctcttcctcctcctc	8	16	2	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_002152	exon1	c.C615T	p.A205A	AGTGGAGGCCTCC		60	16	0.27	54	0	0				5	3	0.6				A	49657880	G	A	49657880	2	1	74	1	0	0	0	0	0	0	0	1	7392	987	35	3		3	HRC	19	49657880	Silent	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	13025922	49657880	9471103	66	5214											
SAMD10	140700	mdanderson.org	37	chr20	62607102	62607102	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctgcaggcggagcacctGctgcagcacctcctgcctct	10	18	1	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_080621	exon4	c.C529A	p.Q177K	GCACCTGCTGCAG		17	2	0.12	12	0	0				9	0	0				T	62607102	G	T	62607102	3	4	74	1	0	0	0	0	1	0	0	0	13866	1328	46	2	87	2	SAMD10	20	62607102	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10		62607102	418418	67	5215											
C22orf43	51233	broad.mit.edu	37	chr22	23974156	23974156	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcataacagggtgcgtcctTccccctgggccagccacagt	10	15	1	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	C22orf43	NM_016449	exon1	c.A55G	p.K19E	CGTCCTTCCCCCT		151	6	0.04	122	1	0.0081967213		18		3	0	0				C	23974156	T	C	23974156	3	2	74	1	0	0	0	0	1	0	0	0	2164	1792	62	4	682	4	C22orf43	22	23974156	Missense_Mutation	SNP	T	TCGA-2G-AALX-01A-11D-A42Y-10		23974156	27330410	68	5216											
MKL1	57591	mdanderson.org	37	chr22	40807620	40807620	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgtccatgggtgacgggGggtggtccaggatggcagtg	21	6	0	1	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_020831	exon15	c.C2570A	p.P857H	GACGGGGGGTGGT		34	3	0.09	37	0	0				117	0	0				T	40807620	G	T	40807620	3	4	74	1	0	0	0	0	1	0	0	0	9648	1232	43	3	229	3	MKL1	22	40807620	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	16833464	40807620	10496946	69	5217											
TNFRSF13C	115650	mdanderson.org	37	chr22	42322228	42322228	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccaggcccagcagcgcggGggcgccaaagagcagcccgg	17	15	0	1	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_052945	exon2	c.C244A	p.P82T	GCGCGGGGGCGCC		19	2	0.11	19	0	0				2	0	0				T	42322228	G	T	42322228	3	4	74	1	0	0	0	0	1	0	0	0	16347	1232	43	3	318	3	TNFRSF13C	22	42322228	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	1514608	42322228	8982338	70	5218											
CPT1B	1375	mdanderson.org	37	chr22	51016324	51016324	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accgtgaactggaaggccacGgcctggtgagcttccgccat	13	13	0	2	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001145135	exon2	c.C21A	p.A7A	GGCCACGGCCTGG		32	3	0.09	26	0	0				38	0	0				T	51016324	G	T	51016324	2	4	74	1	0	0	0	0	0	0	0	1	3855	1103	39	1		1	CPT1B	22	51016324	Silent	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	8694096	51016324	288242	71	5219											
VCX	26609	bcgsc.ca	37	chrX	7811810	7811810	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cgaggtggaagaaccactgaGtcaggagagccaggtggagg	18	7	1	3	rs149395826		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	VCX	NM_013452	exon3	c.G374C	p.S125T	CACTGAGTCAGGA		176	12	0.07	90	0	0		28		6	0	0				C	7811810	G	C	7811810	3	2	74	1	0	0	0	0	1	0	0	0	17201	1029	36	5	380	5	VCX	23	7811810	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10		7811810	147458750	72	5220											
TSC22D3	1831	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	106957876	106957876	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtcttcaacagggtgttcTcacgctctagctgggagttc	13	10	4	0	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_198057	exon3	c.A476G	p.E159G	GTGTTCTCACGCT		122	5	0.04	62	0	0				406	1	0				C	106957876	T	C	106957876	3	2	74	1	0	0	0	0	1	0	0	0	16669	1551	54	4	130	4	TSC22D3	23	106957876	Missense_Mutation	SNP	T	TCGA-2G-AALX-01A-11D-A42Y-10	99146066	106957876	48312684	73	5221											
BRCC3	79184	mdanderson.org	37	chrX	154305544	154305544	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttctccagagcagctgtctGcagcttcaacagaggcagag	11	11	3	3	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001242640	exon4	c.G298A	p.A100T	CTGTCTGCAGCTT		38	3	0.08	19	0	0				35	0	0				A	154305544	G	A	154305544	3	1	74	1	0	0	0	0	1	0	0	0	1502	1319	46	2	309	2	BRCC3	23	154305544	Missense_Mutation	SNP	G	TCGA-2G-AALX-01A-11D-A42Y-10	47347668	154305544	965016	74	5222											
USP48	84196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	22028019	22028019	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aatctggatctttttctccaTctggtttagcttcttccttg	6	10	5	0	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_032236	exon22	c.A2699G	p.D900G	TCTCCATCTGGTT		77	15	0.19	79	0	0				131	41	0.31				C	22028019	T	C	22028019	3	2	75	1	0	0	0	0	1	0	0	0	17138	1435	50	4	432	4	USP48	1	22028019	Missense_Mutation	SNP	T	TCGA-2G-AALY-01A-11D-A42Y-10		22028019	227222602	1	5223											
ATPAF1	64756	mdanderson.org	37	chr1	47101480	47101480	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggttctgggcacatttcaGttctgctccaagtccgcttt	9	11	3	0	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_022745	exon9	c.C1024A	p.L342M	ATTTCAGTTCTGC		40	3	0.08	43	0	0				50	0	0				T	47101480	G	T	47101480	3	4	75	1	0	0	0	0	1	0	0	0	1198	1020	36	3	35	3	ATPAF1	1	47101480	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	25073461	47101480	202149141	2	5224											
SEC22B	9554	broad.mit.edu	37	chr1	145109284	145109292	+	RNA	DEL	AAAAAAAAA	AAAAAAAAA	-													gcagagcgagactccgtctcAaaaaaaaagaaaaaaaaaaa					rs34197869		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	AAAAAAAAA	AAAAAAAAA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	.	.	.	.	CGTCTCAAAAAAA		6	2	0.33	5	0	0				0	0					-	145109292	AAAAAAAAA	-	145109284	6	5	75	0	1	1	0	1	0	0	0	0	14042	145	5	0		0	SEC22B	1	145109284	RNA	DEL	AAAAAAAAA	TCGA-2G-AALY-01A-11D-A42Y-10	98007804	145109284	104141337	3	5225											
HRNR	388697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	152191287	152191287	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgagtgtaaccagaggactGccctgagctagacttgtgac	12	10	0	5	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_001009931	exon3	c.C2818G	p.Q940E	AGGACTGCCCTGA		59	21	0.36	67	0	0				0	0					C	152191287	G	C	152191287	3	2	75	1	0	0	0	0	1	0	0	0	7399	1328	46	5	5738	5	HRNR	1	152191287	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	7082003	152191287	97059334	4	5226											
MEMO1	51072	mdanderson.org	37	chr2	32168448	32168448	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctagctgtgcattcagctgCggtcctataaaaagacaaag	9	9	2	1	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_015955	exon2	c.G66A	p.P22P	CAGCTGCGGTCCT		35	3	0.09	23	0	0				3	0	0				T	32168448	C	T	32168448	2	4	75	1	0	0	0	0	0	0	0	1	9520	755	27	1		1	MEMO1	2	32168448	Silent	SNP	C	TCGA-2G-AALY-01A-11D-A42Y-10		32168448	211030925	5	5227											
HOXD13	3239	mdanderson.org	37	chr2	176957928	176957928	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcgcccggaggctcccccaGccaaagagtgcccagcaccc	11	20	0	1	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_000523	exon1	c.G310T	p.A104S	CCCCCAGCCAAAG		39	3	0.08	33	0	0				3	0	0				T	176957928	G	T	176957928	3	4	75	1	0	0	0	0	1	0	0	0	7362	971	34	2	312	2	HOXD13	2	176957928	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	144789480	176957928	66241445	6	5228											
TTN	7273	broad.mit.edu	37	chr2	179595012	179595012	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccactttattgtcatgggtgCagtgccacccacaagagcct	9	13	1	1	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	TTN	NM_001267550	exon62	c.G18115A	p.A6039T	TGGGTGCAGTGCC		80	4	0.05	72	0	0		18412		0	0					T	179595012	C	T	179595012	3	4	75	1	0	0	0	0	1	0	0	0	16796	710	25	2	86618	2	TTN	2	179595012	Missense_Mutation	SNP	C	TCGA-2G-AALY-01A-11D-A42Y-10	2637084	179595012	63604361	7	5229											
SPAG16	79582	mdanderson.org	37	chr2	214149283	214149283	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggcatgggtttgacggcaGccggggacgcgagggacacg	20	9	0	1	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_024532	exon1	c.G76T	p.A26S	ACGGCAGCCGGGG		46	3	0.07	36	0	0				24	0	0				T	214149283	G	T	214149283	3	4	75	1	0	0	0	0	1	0	0	0	15033	971	34	2	78	2	SPAG16	2	214149283	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	34554271	214149283	29050090	8	5230											
TRANK1	9881	broad.mit.edu	37	chr3	36873948	36873948	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccttttatcctgctgcctcTccccctgcccctttcatcct	3	20	2	0	rs201976066		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	TRANK1	NM_014831	exon21	c.A6994G	p.R2332G	TGCCTCTCCCCCT		183	7	0.04	165	0	0		398		7	0	0				C	36873948	T	C	36873948	3	2	75	1	0	0	0	0	1	0	0	0	16514	1559	54	4	1795	4	TRANK1	3	36873948	Missense_Mutation	SNP	T	TCGA-2G-AALY-01A-11D-A42Y-10		36873948	161148482	9	5231											
ROBO2	6092	mdanderson.org	37	chr3	77666777	77666777	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaacacctcctgttcgagGcgtggcttcttctcctgcta	8	16	2	0	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	ROBO2_ENST00000487694,colon,carcinoma,-1,4	ROBO2_ENST00000487694	NM_002942	exon22	c.G3407T	p.G1136V	TTCGAGGCGTGGC		42	3	0.07	58	0	0		-1	4	3	0	0				T	77666777	G	T	77666777	3	4	75	1	0	0	0	0	1	0	0	0	13565	1203	42	2	3495	2	ROBO2	3	77666777	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	40792829	77666777	120355653	10	5232											
ZBTB11	27107	mdanderson.org	37	chr3	101373562	101373562	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acttactgagtacaatgataGcctcgaacctcaggctttgg	9	10	1	2	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_014415	exon8	c.C2295A	p.G765G	ATGATAGCCTCGA		64	4	0.06	83	0	0				7	0	0				T	101373562	G	T	101373562	2	4	75	1	0	0	0	0	0	0	0	1	17582	958	34	2		2	ZBTB11	3	101373562	Silent	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	23706785	101373562	96648868	11	5233											
MUC4	4585	bcgsc.ca	37	chr3	195508187	195508187	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgacaggaagaggggtggCgtgacctgtggatgctgagg	21	5	0	4	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	MUC4	NM_018406	exon2	c.G10264A	p.A3422T	GGGTGGCGTGACC		151	8	0.05	123	3	0.0243902439		1505		3	0	0				T	195508187	C	T	195508187	3	4	75	1	0	0	0	0	1	0	0	0	10025	768	27	1		1	MUC4	3	195508187	Missense_Mutation	SNP	C	TCGA-2G-AALY-01A-11D-A42Y-10	94134625	195508187	2514243	12	5234											
MAN2B2	23324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr4	6599004	6599004	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgggccctgcagcagctcCagcagcttcgctgggccgtc	13	17	0	0	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_015274	exon8	c.C1222T	p.Q408X	CAGCTCCAGCAGC		79	21	0.27	84	0	0				8	0	0				T	6599004	C	T	6599004	4	4	75	1	0	0	0	0	0	1	0	0	9266	595	21	3	1252	3	MAN2B2	4	6599004	Nonsense_Mutation	SNP	C	TCGA-2G-AALY-01A-11D-A42Y-10		6599004	184555272	13	5235											
ADH1C	126	broad.mit.edu	37	chr4	100265826	100265827	+	RNA	INS	-	-	AACTC													tgacatctttacattttcttINSaacaagtttttatctgcaat					rs34551784	bycluster;byfrequency;by1000genomes	TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	.	.	.	.	TTTTCTTAACAAG		6	4	0.67	6	0	0				0	0					AACTC	100265827	-	AACTC	100265826	6	5	75	0	1	1	1	0	0	0	0	0	308	1769	61	0		0	ADH1C	4	100265826	RNA	INS	-	TCGA-2G-AALY-01A-11D-A42Y-10	93666822	100265826	90888450	14	5236											
NCOA7	135112	mdanderson.org	37	chr6	126176191	126176191	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaagaaaaaacaagccaaaCaaaatgcagagacagcctca	6	9	1	2	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_181782	exon3	c.C76G	p.Q26E	GCCAAACAAAATG		35	3	0.09	18	0	0				1	0	0				G	126176191	C	G	126176191	3	3	75	1	0	0	0	0	1	0	0	0	10280	479	17	5	82	5	NCOA7	6	126176191	Missense_Mutation	SNP	C	TCGA-2G-AALY-01A-11D-A42Y-10		126176191	44938876	15	5237											
MED23	9439	mdanderson.org	37	chr6	131913587	131913587	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtaatgttctctcttgGcactaaaggctgactgcaac	9	10	2	1	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_015979	exon26	c.C3430A	p.P1144T	CTCTTGGCACTAA		61	4	0.07	69	0	0				18	0	0				T	131913587	G	T	131913587	3	4	75	1	0	0	0	0	1	0	0	0	9490	1203	42	2	721	2	MED23	6	131913587	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	5737396	131913587	39201480	16	5238											
TAAR2	9287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	132938975	132938975	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgttatgctaagcatcaGgtcaaaactataataaatct	7	6	3	0	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_001033080	exon2	c.C370A	p.L124M	GCATCAGGTCAAA		55	5	0.09	39	0	0				0	0					T	132938975	G	T	132938975	3	4	75	1	0	0	0	0	1	0	0	0	15546	991	35	3	689	3	TAAR2	6	132938975	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	1025388	132938975	38176092	17	5239											
TBP	6908	hgsc.bcm.edu;mdanderson.org	37	chr6	170871016	170871016	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcaacaacaacaGcagcagcagcagcagcagca	10	14	0	0	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	TBP,NS,carcinoma,0,2	TBP	NM_003194	exon3	c.G192A	p.Q64Q	ACAACAGCAGCAG		64	6	0.09	59	0	0		0	2	35	0	0				A	170871016	G	A	170871016	2	1	75	1	0	0	0	0	0	0	0	1	15703	962	34	2		2	TBP	6	170871016	Silent	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	37932041	170871016	244051	18	5240											
RAPGEF5	9771	ucsc.edu	37	chr7	22176601	22176601	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cttaaacttcccagggatttTctaaaaaacaaacacaaaca	3	10	1	0	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	RAPGEF5	NM_012294	exon22	c.A1819T	p.K607X	GGATTTTCTAAAA		33	4	0.12	31	0	0		96		0	0					A	22176601	T	A	22176601	4	1	75	1	0	0	0	0	0	1	0	0	13098	1797	62	5	393	5	RAPGEF5	7	22176601	Nonsense_Mutation	SNP	T	TCGA-2G-AALY-01A-11D-A42Y-10		22176601	136962062	19	5241											
NOD1	10392	hgsc.bcm.edu;mdanderson.org	37	chr7	30491538	30491538	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagctccggcaaagcccGcaggaagcccagctgcatgt	12	16	0	0	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_006092	exon6	c.C1495A	p.R499R	AAGCCCGCAGGAA		85	4	0.05	69	0	0				4	0	0				T	30491538	G	T	30491538	2	4	75	1	0	0	0	0	0	0	0	1	10562	1086	38	1		1	NOD1	7	30491538	Silent	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	8314937	30491538	128647125	20	5242											
CALN1	83698	mdanderson.org	37	chr7	71252821	71252821	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgacactgatgatgaagGccatagcaaaggcgcatatg	12	8	0	4	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_031468	exon7	c.C725A	p.A242D	ATGAAGGCCATAG		48	3	0.06	42	0	0				4	0	0				T	71252821	G	T	71252821	3	4	75	1	0	0	0	0	1	0	0	0	2609	1203	42	2	64	2	CALN1	7	71252821	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	40761283	71252821	87885842	21	5243											
CFTR	1080	broad.mit.edu	37	chr7	117175426	117175426	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcctgatagtccttgcccTttttcaggctgggctaggga	11	10	1	1	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	CFTR	NM_000492	exon6	c.T704C	p.L235P	TTGCCCTTTTTCA		144	4	0.03	157	1	0.0063694268		171		0	0					C	117175426	T	C	117175426	3	2	75	1	0	0	0	0	1	0	0	0	3316	1609	56	4	726	4	CFTR	7	117175426	Missense_Mutation	SNP	T	TCGA-2G-AALY-01A-11D-A42Y-10	45922605	117175426	41963237	22	5244											
GPR124	25960	mdanderson.org	37	chr8	37699257	37699257	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccgctggctctgggcccctGcaagctcaccaacctgcagc	10	18	2	0	rs376732365		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_032777	exon19	c.G3401A	p.C1134Y	GCCCCTGCAAGCT		25	3	0.12	18	0	0				38	0	0				A	37699257	G	A	37699257	3	1	75	1	0	0	0	0	1	0	0	0	6677	1319	46	2	3454	2	GPR124	8	37699257	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10		37699257	108664765	23	5245											
SLC2A8	29988	mdanderson.org	37	chr9	130160366	130160366	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcaccggcctggcctgCggtgttgcctccctagtggc	12	17	1	0	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_014580	exon3	c.C402T	p.C134C	GGCCTGCGGTGTT		15	3	0.2	18	0	0				22	0	0				T	130160366	C	T	130160366	2	4	75	1	0	0	0	0	0	0	0	1	14605	776	27	1		1	SLC2A8	9	130160366	Silent	SNP	C	TCGA-2G-AALY-01A-11D-A42Y-10		130160366	11053065	24	5246											
ITIH5	80760	mdanderson.org	37	chr10	7618459	7618459	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgctctgcaccaccggttcGggtcccatggcagccgacat	11	16	1	0	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_001001851	exon10	c.C1935A	p.P645P	CGGTTCGGGTCCC		18	3	0.17	29	0	0				13	0	0				T	7618459	G	T	7618459	2	4	75	1	0	0	0	0	0	0	0	1	7950	1103	39	1		1	ITIH5	10	7618459	Silent	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10		7618459	127916288	25	5247											
EIF3A	8661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	120820788	120820788	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taaattctacttcaagccaaTtgtaaaggtctttcacttct	4	9	5	0	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_003750	exon8	c.A1175G	p.N392S	AGCCAATTGTAAA		100	31	0.31	150	0	0				53	27	0.51				C	120820788	T	C	120820788	3	2	75	1	0	0	0	0	1	0	0	0	5038	1493	52	4	3033	4	EIF3A	10	120820788	Missense_Mutation	SNP	T	TCGA-2G-AALY-01A-11D-A42Y-10	113202329	120820788	14713959	26	5248											
MUC2	4583	mdanderson.org	37	chr11	1093434	1093434	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acacccatcaccaccaccacCacggtgaccccaaccccgac	4	23	1	1	rs12786901	bycluster	TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_002457	exon30	c.C5253T	p.T1751T	CACCACCACGGTG		24	2	0.08	30	1	0.0333333333				0	0					T	1093434	C	T	1093434	2	4	75	1	0	0	0	0	0	0	0	1	10022	581	21	3		3	MUC2	11	1093434	Silent	SNP	C	TCGA-2G-AALY-01A-11D-A42Y-10		1093434	133913082	27	5249											
BSCL2	26580	mdanderson.org	37	chr11	62473086	62473086	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggatgcagcagctggtgGttcctggaaagagagggtga	18	5	0	2	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_001122955	exon2	c.C91A	p.P31T	CTGGTGGTTCCTG		36	3	0.08	31	0	0				69	0	0				T	62473086	G	T	62473086	3	4	75	1	0	0	0	0	1	0	0	0	1529	1261	44	3	1337	3	BSCL2	11	62473086	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	61379652	62473086	72533430	28	5250											
ANO1	55107	mdanderson.org	37	chr11	69972215	69972215	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttcgcctggctgggcgtGtacacccagatgctcatccc	10	15	1	1	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_018043	exon10	c.G1011T	p.V337V	GGGCGTGTACACC		71	4	0.06	79	0	0				4	0	0				T	69972215	G	T	69972215	2	4	75	1	0	0	0	0	0	0	0	1	689	1364	48	3		3	ANO1	11	69972215	Silent	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	7499129	69972215	65034301	29	5251											
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	103093789	103093789	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggaacgaattcatcctttGgaaactgaacaggcaggatt	10	7	1	1	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_001377	exon59	c.G9327A	p.L3109L	TCCTTTGGAAACT		26	17	0.65	57	0	0				1	1	1				A	103093789	G	A	103093789	2	1	75	1	0	0	0	0	0	0	0	1	4872	1339	47	3		3	DYNC2H1	11	103093789	Silent	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	33121574	103093789	31912727	30	5252											
PDE1B	5153	mdanderson.org	37	chr12	54960850	54960850	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagcttctctgctggaagCcgtctacatagatgagacac	9	12	2	2	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_000924	exon3	c.C206T	p.A69V	TGGAAGCCGTCTA		39	3	0.08	32	0	0				1	0	0				T	54960850	C	T	54960850	3	4	75	1	0	0	0	0	1	0	0	0	11680	739	26	2	269	2	PDE1B	12	54960850	Missense_Mutation	SNP	C	TCGA-2G-AALY-01A-11D-A42Y-10		54960850	78891045	31	5253											
LHX5	64211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	113906210	113906210	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggtccgtacaggatgacaCtgcgggcggacggatcggga	18	10	0	1	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_022363	exon4	c.398-1G>A	.	ATGACACTGCGGG		75	31	0.41	76	0	0				0	0					T	113906210	C	T	113906210	5	4	75	1	0	0	0	0	0	0	1	0	8813	579	20	3	823	3	LHX5	12	113906210	Splice_Site	SNP	C	TCGA-2G-AALY-01A-11D-A42Y-10	58945360	113906210	19945685	32	5254											
AACS	65985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	125626747	125626747	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgagaccctggatctgtaccGggacatccctgagctgcagg	13	13	1	2	rs146784734	bycluster;by1000genomes	TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_023928	exon18	c.G1991A	p.R664Q	TGTACCGGGACAT		101	22	0.22	95	0	0	0			104	33	0.32				A	125626747	G	A	125626747	3	1	75	1	0	0	0	0	1	0	0	0	9	1116	39	1	2061	1	AACS	12	125626747	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	11720537	125626747	8225148	33	5255											
DDX51	317781	mdanderson.org	37	chr12	132626108	132626108	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtccaccaggcggccggGggtggctaccacgatgtcag	17	12	1	0	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	DDX51,NS,carcinoma,0,1	DDX51	NM_175066	exon7	c.C1039A	p.P347T	GGCCGGGGGTGGC		14	2	0.14	13	0	0		0	1	56	0	0				T	132626108	G	T	132626108	3	4	75	1	0	0	0	0	1	0	0	0	4392	1232	43	3	997	3	DDX51	12	132626108	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	6999361	132626108	1225787	34	5256											
LMO7	4008	mdanderson.org	37	chr13	76427264	76427264	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacctggactccccccgatcCaattcttggagacagcctcc	7	17	1	1	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_015842	exon25	c.C3702T	p.S1234S	CCGATCCAATTCT		42	3	0.07	39	0	0				32	0	0				T	76427264	C	T	76427264	2	4	75	1	0	0	0	0	0	0	0	1	8895	581	21	3		3	LMO7	13	76427264	Silent	SNP	C	TCGA-2G-AALY-01A-11D-A42Y-10		76427264	38742614	35	5257											
IPO5	3843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	98667828	98667828	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccttaataatgaacacttTgaagaactgggaggtatatt	9	5	0	3	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_002271	exon23	c.T2424C	p.F808F	ACACTTTGAAGAA		48	11	0.23	85	0	0				136	63	0.46				C	98667828	T	C	98667828	2	2	75	1	0	0	0	0	0	0	0	1	7839	1809	63	4		4	IPO5	13	98667828	Silent	SNP	T	TCGA-2G-AALY-01A-11D-A42Y-10	22240564	98667828	16502050	36	5258											
METTL3	56339	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr14	21967677	21967677	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcaaccagtgacctgtacGgcctgtccgaatgatgcgtt	11	11	1	2	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	METTL3,NS,malignant_melanoma,+1,2	METTL3	NM_019852	exon8	c.C1411T	p.R471C	CTGTACGGCCTGT		204	7	0.03	177	0	0		48	2	112	0	0				A	21967677	G	A	21967677	3	1	75	1	0	0	0	0	1	0	0	0	9550	1116	39	1	347	1	METTL3	14	21967677	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10		21967677	85381863	37	5259											
FUT8	2530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	66209100	66209100	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagatagaaacggtcaagtAccccacatatcctgaggctg	10	10	1	3	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_178155	exon11	c.A1700G	p.Y567C	TCAAGTACCCCAC		72	21	0.29	78	0	0				74	21	0.28				G	66209100	A	G	66209100	3	3	75	1	0	0	0	0	1	0	0	0	6144	391	14	4	1833	4	FUT8	14	66209100	Missense_Mutation	SNP	A	TCGA-2G-AALY-01A-11D-A42Y-10	44241423	66209100	41140440	38	5260											
PTGR2	145482	mdanderson.org	37	chr14	74350831	74350831	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtccatgatgacaggagGtaacattggaaagcagatag	12	7	0	3	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_152444	exon10	c.G1007T	p.G336V	CAGGAGGTAACAT		36	3	0.08	30	0	0				11	0	0				T	74350831	G	T	74350831	3	4	75	1	0	0	0	0	1	0	0	0	12803	1261	44	3	1041	3	PTGR2	14	74350831	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	8141731	74350831	32998709	39	5261											
SLC25A29	123096	mdanderson.org	37	chr14	100758759	100758759	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcagcgttgacggggaagGcgcgcagcagcgtggacgcc	19	11	0	1	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_001039355	exon4	c.C773A	p.A258D	GGGAAGGCGCGCA		18	2	0.11	8	0	0				32	0	0				T	100758759	G	T	100758759	3	4	75	1	0	0	0	0	1	0	0	0	14546	1203	42	2	142	2	SLC25A29	14	100758759	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	26407928	100758759	6590781	40	5262											
PDCD7	10081	mdanderson.org	37	chr15	65426076	65426076	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggcggcggctgcgggggcGgtgggcctgggcgaccctgg	24	11	0	0	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_005707	exon1	c.C44T	p.P15L	GGGGGCGGTGGGC		34	3	0.09	35	0	0				7	0	0				A	65426076	G	A	65426076	3	1	75	1	0	0	0	0	1	0	0	0	11671	1116	39	1	1433	1	PDCD7	15	65426076	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10		65426076	37105316	41	5263											
TMEM8A	58986	broad.mit.edu;mdanderson.org	37	chr16	426323	426323	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgaggcagaaggggctgCggtccaccctgccactcctg	14	13	0	2	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	TMEM8A	NM_021259	exon6	c.G1037A	p.R346H	GGGCTGCGGTCCA		35	3	0.09	39	0	0		49		94	0	0				T	426323	C	T	426323	3	4	75	1	0	0	0	0	1	0	0	0	16273	768	27	1	1310	1	TMEM8A	16	426323	Missense_Mutation	SNP	C	TCGA-2G-AALY-01A-11D-A42Y-10		426323	89928430	42	5264											
ZNF423	23090	mdanderson.org	37	chr16	49670885	49670885	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accttggagtcgaagacctcCtgacacagggtgcagtggta	13	10	0	2	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_015069	exon4	c.G2178T	p.Q726H	GACCTCCTGACAC		34	3	0.09	43	0	0				22	0	0				A	49670885	C	A	49670885	3	1	75	1	0	0	0	0	1	0	0	0	17954	680	24	3	1696	3	ZNF423	16	49670885	Missense_Mutation	SNP	C	TCGA-2G-AALY-01A-11D-A42Y-10	49244562	49670885	40683868	43	5265											
ZFHX3	463	mdanderson.org	37	chr16	72993363	72993363	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacacgcggaagctgtgcaGgacggggctgagccccgcca	15	13	0	1	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_006885	exon2	c.C682A	p.L228M	TGTGCAGGACGGG		94	5	0.05	114	0	0				0	0					T	72993363	G	T	72993363	3	4	75	1	0	0	0	0	1	0	0	0	17691	991	35	3	10465	3	ZFHX3	16	72993363	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	23322478	72993363	17361390	44	5266											
FLII	2314	mdanderson.org	37	chr17	18154278	18154278	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcgagtgtggcctccccGccaatccagtagtagatctc	10	13	1	1	rs144125005		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_002018	exon14	c.C1650T	p.G550G	CTCCCCGCCAATC		28	3	0.11	34	0	0	0			78	0	0				A	18154278	G	A	18154278	2	1	75	1	0	0	0	0	0	0	0	1	5957	1074	38	1		1	FLII	17	18154278	Silent	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10		18154278	63040932	45	5267											
CCL5	6352	bcgsc.ca;mdanderson.org	37	chr17	34207264	34207264	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgcaggagcgcagagggCagtagcaatgaggatgacag	17	6	0	4	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	CCL5	NM_002985	exon1	c.G46A	p.A16T	AGAGGGCAGTAGC		64	5	0.08	64	0	0		6		86	0	0				T	34207264	C	T	34207264	3	4	75	1	0	0	0	0	1	0	0	0	2927	710	25	2	241	2	CCL5	17	34207264	Missense_Mutation	SNP	C	TCGA-2G-AALY-01A-11D-A42Y-10	16052986	34207264	46987946	46	5268											
HEXIM1	0	broad.mit.edu	37	chr17	43229644	43229645	+	RNA	INS	-	-	T													tattagaccctttttctttaINStttttttttttttttgagac					rs71136074	bycluster	TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	HEXIM1	.	.	.	.	TTCTTTATTTTTT		11	5	0.45	7	0	0		25		0	0					T	43229645	-	T	43229644	6	5	75	0	1	1	1	0	0	0	0	0	7116	464	16	0		0	HEXIM1	17	43229644	RNA	INS	-	TCGA-2G-AALY-01A-11D-A42Y-10	9022380	43229644	37965566	47	5269											
MAP3K14	9020	mdanderson.org	37	chr17	43351583	43351583	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cagggcccggtcctctgggaGacagccctgctccttgacca	12	16	1	2	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	.	.	.	.	CTGGGAGACAGCC		39	3	0.08	38	0	0				3	0	0				T	43351583	G	T	43351583	3	4	75	1	0	0	0	0	1	0	0	0	9297	942	33	3	1420	3	MAP3K14	17	43351583	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	121939	43351583	37843627	48	5270											
C17orf80	55028	mdanderson.org	37	chr17	71233050	71233050	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggttaccttggactagggGtgttgccagggaagcctcag	15	9	1	0	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_001100622	exon3	c.G1429T	p.V477L	CTAGGGGTGTTGC		41	3	0.07	36	0	0				24	0	0				T	71233050	G	T	71233050	3	4	75	1	0	0	0	0	1	0	0	0	1895	1261	44	3	1431	3	C17orf80	17	71233050	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	27881467	71233050	9962160	49	5271											
C18orf8	29919	mdanderson.org	37	chr18	21109168	21109168	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagcagggcagagccgaaGcagcccgctcctcaagaggc	15	13	1	2	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_013326	exon15	c.G1322A	p.S441N	GCCGAAGCAGCCC		36	3	0.08	24	0	0				18	0	0				A	21109168	G	A	21109168	3	1	75	1	0	0	0	0	1	0	0	0	1919	971	34	2	1380	2	C18orf8	18	21109168	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10		21109168	56968080	50	5272											
ZNF396	252884	hgsc.bcm.edu	37	chr18	32949292	32949292	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctcaccagtatgggttcGtcgatgctgaatcagaattg	10	9	2	2	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	ZNF396,NS,carcinoma,+1,1	ZNF396	NM_145756	exon4	c.C895A	p.R299R	GGGTTCGTCGATG		70	3	0.04	126	0	0		1	1	0	0					T	32949292	G	T	32949292	2	4	75	1	0	0	0	0	0	0	0	1	17938	1153	40	1		1	ZNF396	18	32949292	Silent	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	11840124	32949292	45127956	51	5273											
ST8SIA5	29906	mdanderson.org	37	chr18	44260338	44260338	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttgcggcgattcgaagtcGtccagcacgtacttgacgcg	13	12	0	1	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_013305	exon7	c.C798T	p.D266D	GAAGTCGTCCAGC		51	3	0.06	71	0	0				6	0	0				A	44260338	G	A	44260338	2	1	75	1	0	0	0	0	0	0	0	1	15290	1136	40	1		1	ST8SIA5	18	44260338	Silent	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	11311046	44260338	33816910	52	5274											
MEX3C	51320	mdanderson.org	37	chr18	48723021	48723021	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgctctttctccggagcaGggccgcctgctccccgttca	11	17	3	0	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_016626	exon1	c.C670A	p.L224M	GGAGCAGGGCCGC		12	2	0.17	20	0	0				8	0	0				T	48723021	G	T	48723021	3	4	75	1	0	0	0	0	1	0	0	0	9560	991	35	3	1317	3	MEX3C	18	48723021	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	4462683	48723021	29354227	53	5275											
DCC	1630	mdanderson.org	37	chr18	51053066	51053066	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agatcccctttgcttcctgtGtctgtgccaacagcccctga	8	15	1	2	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_005215	exon28	c.G4191T	p.V1397V	TCCTGTGTCTGTG		42	3	0.07	69	0	0				2	0	0				T	51053066	G	T	51053066	2	4	75	1	0	0	0	0	0	0	0	1	4305	1364	48	3		3	DCC	18	51053066	Silent	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	2330045	51053066	27024182	54	5276											
MALT1	10892	mdanderson.org	37	chr18	56402546	56402546	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agaaaatcactgtgttactgGatgaagttgcagaaggtaaa	11	4	1	3	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_006785	exon13	c.G1588T	p.D530Y	TTACTGGATGAAG		11	2	0.18	23	0	0				8	0	0				T	56402546	G	T	56402546	3	4	75	1	0	0	0	0	1	0	0	0	9251	1174	41	3	1638	3	MALT1	18	56402546	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	5349480	56402546	21674702	55	5277											
CAPNS1	826	broad.mit.edu;bcgsc.ca	37	chr19	36632054	36632054	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcggcggcggcggcggCggtggtggaggcggcggtgg	28	9	0	0	rs17879825		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	CAPNS1	NM_001749	exon2	c.C141T	p.G47G	CGGCGGCGGTGGT		88	9	0.1	106	1	0.0094339623		19		5	1	0.2				T	36632054	C	T	36632054	2	4	75	1	0	0	0	0	0	0	0	1	2651	755	27	1		1	CAPNS1	19	36632054	Silent	SNP	C	TCGA-2G-AALY-01A-11D-A42Y-10		36632054	22496929	56	5278											
ALDH16A1	126133	mdanderson.org	37	chr19	49972188	49972188	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agaccgggaccatctgacccGctgcctggccttgcaccaag	11	16	1	2	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_153329	exon16	c.G2192A	p.R731H	TGACCCGCTGCCT		15	3	0.2	17	0	0				242	0	0				A	49972188	G	A	49972188	3	1	75	1	0	0	0	0	1	0	0	0	485	1087	38	1	2254	1	ALDH16A1	19	49972188	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	13340134	49972188	9156795	57	5279											
ATP5J	522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	27102058	27102058	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccgcaaatggactgagacGgctgaccgaatgacagagga	13	10	0	4	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_001003701	exon2	c.C72T	p.A24A	TGAGACGGCTGAC		249	36	0.14	190	0	0				1436	267	0.19				A	27102058	G	A	27102058	2	1	75	1	0	0	0	0	0	0	0	1	1157	1103	39	1		1	ATP5J	21	27102058	Silent	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10		27102058	21027837	58	5280											
PCNT	5116	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr21	47810695	47810695	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagctgctggagtgtttgaaGgaggagagcgcagcaaaggc	18	6	0	2	rs370541579		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	PCNT	NM_006031	exon20	c.G3951A	p.K1317K	TTTGAAGGAGGAG		250	8	0.03	154	0	0		283		10	0	0				A	47810695	G	A	47810695	2	1	75	1	0	0	0	0	0	0	0	1	11636	991	35	3		3	PCNT	21	47810695	Silent	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	20708637	47810695	319200	59	5281											
SAT1	6303	bcgsc.ca;mdanderson.org	37	chrX	23802158	23802158	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctactgaggaaaaaaaaaaaTtagatatgctgcacttaaga	7	5	0	3	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	SAT1	.	.	.	.	AAAAAATTAGATA		89	5	0.06	48	0	0		29		19	0	0				A	23802158	T	A	23802158	3	1	75	1	0	0	0	0	1	0	0	0	13903	1508	52	5		5	SAT1	23	23802158	Missense_Mutation	SNP	T	TCGA-2G-AALY-01A-11D-A42Y-10		23802158	131468402	60	5282											
ARR3	407	mdanderson.org	37	chrX	69501571	69501571	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttacgcggaaaggcgaggaGgagagccagaaggctgtgga	18	6	0	2	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_004312	exon17	c.G1122T	p.E374D	CGAGGAGGAGAGC		39	3	0.08	30	0	0				2	0	0				T	69501571	G	T	69501571	3	4	75	1	0	0	0	0	1	0	0	0	978	991	35	3	1184	3	ARR3	23	69501571	Missense_Mutation	SNP	G	TCGA-2G-AALY-01A-11D-A42Y-10	45699413	69501571	85768989	61	5283											
NOX1	27035	broad.mit.edu	37	chrX	100105256	100105256	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagcagaggtcaaagtaaaAggatgccattccaggagaga	14	6	1	2	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	NOX1	NM_013955	exon9	c.T1017C	p.P339P	AGTAAAAGGATGC		117	4	0.03	68	0	0		79		2	0	0				G	100105256	A	G	100105256	2	3	75	1	0	0	0	0	0	0	0	1	10602	59	3	4		4	NOX1	23	100105256	Silent	SNP	A	TCGA-2G-AALY-01A-11D-A42Y-10	30603685	100105256	55165304	62	5284											
HCFC1	3054	mdanderson.org	37	chrX	153215724	153215724	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcacttgtgtggccgggcCatagcccttctcattgcggg	12	14	2	0	novel		TCGA-2G-AALY-01A-11D-A42Y-10	TCGA-2G-AALY-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c1d72b00-762d-4b89-bd7e-f9010bfa451a	8bc7851f-087a-4d33-a4e0-20e48169eee0	.	.	NM_005334	exon24	c.G5974A	p.G1992S	CCGGGCCATAGCC		34	3	0.09	20	0	0				121	0	0				T	153215724	C	T	153215724	3	4	75	1	0	0	0	0	1	0	0	0	7031	594	21	3	145	3	HCFC1	23	153215724	Missense_Mutation	SNP	C	TCGA-2G-AALY-01A-11D-A42Y-10	53110468	153215724	2054836	63	5285											
AHDC1	27245	broad.mit.edu	37	chr1	27878527	27878528	+	Frame_Shift_Ins	INS	-	-	GG													ggaagcaggggccggggggtINSgggggggccgccggggtagt					novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	AHDC1	NM_001029882	exon6	c.100_101insCC	p.T34fs	GGGGGGTGGGGGG		47	9	0.19	35	0	0		98		3	0	0				GG	27878528	-	GG	27878527	7	5	76	1	0	1	1	0	0	0	0	0	409	1696	59	0	4715	0	AHDC1	1	27878527	Frame_Shift_Ins	INS	-	TCGA-2G-AALZ-01A-11D-A42Y-10		27878527	221372094	1	5286											
NLRP3	114548	mdanderson.org	37	chr1	247582355	247582355	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagagacctttatgagaaaGcaaaaagagatgagccgaag	13	5	0	4	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_004895	exon1	c.G259T	p.A87S	GAGAAAGCAAAAA		19	2	0.11	17	0	0				1	0	0				T	247582355	G	T	247582355	3	4	76	1	0	0	0	0	1	0	0	0	10524	971	34	2	261	2	NLRP3	1	247582355	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	219703828	247582355	1668266	2	5287											
KCNS3	3790	broad.mit.edu;mdanderson.org	37	chr2	18113148	18113148	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	atgggcaaggtggtccagatCctacggcttatgaggatttt	13	7	0	2	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	KCNS3	NM_002252	exon3	c.C873T	p.I291I	CCAGATCCTACGG		126	5	0.04	90	0	0		85		5	0	0				T	18113148	C	T	18113148	2	4	76	1	0	0	0	0	0	0	0	1	8133	845	30	3		3	KCNS3	2	18113148	Silent	SNP	C	TCGA-2G-AALZ-01A-11D-A42Y-10		18113148	225086225	3	5288											
SOS1	6654	hgsc.bcm.edu	37	chr2	39237743	39237743	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acttctcaaaccacagagtgAggttggtggtatgtcgaatc	11	8	1	2	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_005633	exon15	c.T2492C	p.L831P	AGAGTGAGGTTGG		67	4	0.06	57	0	0				8	0	0				G	39237743	A	G	39237743	3	3	76	1	0	0	0	0	1	0	0	0	14989	304	11	4	1545	4	SOS1	2	39237743	Missense_Mutation	SNP	A	TCGA-2G-AALZ-01A-11D-A42Y-10	21124595	39237743	203961630	4	5289											
USP34	9736	broad.mit.edu	37	chr2	61610448	61610448	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ataatgtgctgcatgacagcGggaatatgtagccatattct	10	7	1	1	rs202087339	bycluster;by1000genomes;alternate_allele	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	USP34	NM_014709	exon6	c.C777A	p.P259P	GACAGCGGGAATA		318	4	0.01	239	0	0		334		1	0	0				T	61610448	G	T	61610448	2	4	76	1	0	0	0	0	0	0	0	1	17124	1103	39	1		1	USP34	2	61610448	Silent	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	22372705	61610448	181588925	5	5290											
ACTR1B	10120	broad.mit.edu;mdanderson.org	37	chr2	98274702	98274702	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttacatcaagcgtgctgccGtctggcaacgtgtactgcac	10	13	2	0	rs146624887	bycluster;byfrequency;by1000genomes	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	ACTR1B	NM_005735	exon7	c.C735T	p.D245D	GCTGCCGTCTGGC		62	4	0.06	44	0	0		34		93	2	0.02				A	98274702	G	A	98274702	2	1	76	1	0	0	0	0	0	0	0	1	210	1136	40	1		1	ACTR1B	2	98274702	Silent	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	36664254	98274702	144924671	6	5291											
KCNJ13	3769	broad.mit.edu	37	chr2	233635973	233635973	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atatgcaagacctctttgagCgccatccatttgaagtgtgc	9	10	1	3	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	KCNJ13	NM_001172416	exon2	c.G100A	p.A34T	TTTGAGCGCCATC		135	4	0.03	100	0	0		18		0	0					T	233635973	C	T	233635973	3	4	76	1	0	0	0	0	1	0	0	0	8090	768	27	1	990	1	KCNJ13	2	233635973	Missense_Mutation	SNP	C	TCGA-2G-AALZ-01A-11D-A42Y-10	135361271	233635973	9563400	7	5292											
SCLY	51540	mdanderson.org	37	chr2	239006909	239006909	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaacgcgctccggctcagCgtgggccgcagcaccaccag	14	16	1	0	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_016510	exon12	c.C1275T	p.S425S	GCTCAGCGTGGGC		43	3	0.07	42	0	0				10	0	0				T	239006909	C	T	239006909	2	4	76	1	0	0	0	0	0	0	0	1	13960	767	27	1		1	SCLY	2	239006909	Silent	SNP	C	TCGA-2G-AALZ-01A-11D-A42Y-10	5370936	239006909	4192464	8	5293											
FANCD2	2177	ucsc.edu	37	chr3	10091153	10091153	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctagagttggtagtgttaaaCccatctgctatgatgatgaa	10	6	1	4	rs6785756	bycluster;byfrequency	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	FANCD2	NM_001018115	exon17	c.C1509T	p.N503N	GTTAAACCCATCT		85	14	0.16	86	7	0.0813953488		253		7	4	0.57				T	10091153	C	T	10091153	2	4	76	1	0	0	0	0	0	0	0	1	5697	506	18	3		3	FANCD2	3	10091153	Silent	SNP	C	TCGA-2G-AALZ-01A-11D-A42Y-10		10091153	187931277	9	5294											
OSBPL10	114884	mdanderson.org	37	chr3	32022535	32022535	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccgccgccgagcccggccGccgccgaccggctggagacc	14	22	0	1	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_017784	exon1	c.C137A	p.A46E	CCGGCCGCCGCCG		15	2	0.13	13	0	0				0	0					T	32022535	G	T	32022535	3	4	76	1	0	0	0	0	1	0	0	0	11321	1087	38	1	2205	1	OSBPL10	3	32022535	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	21931382	32022535	165999895	10	5295											
MST1	4485	hgsc.bcm.edu	37	chr3	49723603	49723603	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctgagccgtcggggttccGgcagaagttctcccgaaggt	14	12	2	2	rs199969873	bycluster;by1000genomes	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	MST1,NS,carcinoma,0,5	MST1	NM_020998	exon9	c.C1039T	p.R347W	GGTTCCGGCAGAA		68	10	0.15	44	1	0.0227272727	0.005	0	5	14	0	0				A	49723603	G	A	49723603	3	1	76	1	0	0	0	0	1	0	0	0	9937	1115	39	1	1178	1	MST1	3	49723603	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	17701068	49723603	148298827	11	5296											
OTOP1	133060	mdanderson.org	37	chr4	4204288	4204288	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gaagcaggttggtgaacaccGagtggatcactccaaacctg	12	10	1	1	rs150117288	bycluster;alternate_allele	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_177998	exon4	c.C617A	p.S206X	AACACCGAGTGGA		36	3	0.08	29	0	0				0	0					T	4204288	G	T	4204288	4	4	76	1	0	0	0	0	0	1	0	0	11351	1059	37	1	1233	1	OTOP1	4	4204288	Nonsense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10		4204288	186949988	12	5297											
FAM149A	25854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	187084616	187084616	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcatcgggtggaggggcagGtgctctctcctccgcaccgc	15	14	1	0	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001006655	exon9	c.G872A	p.G291D	GGGCAGGTGCTCT		114	12	0.11	100	0	0				13	1	0.08				A	187084616	G	A	187084616	3	1	76	1	0	0	0	0	1	0	0	0	5485	1261	44	3	898	3	FAM149A	4	187084616	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	182880328	187084616	4069660	13	5298											
GZMK	3003	broad.mit.edu	37	chr5	54329635	54329635	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgtaaaggtgtcttccacGctatagtctctggaggtcat	10	9	4	0	rs200562138	bycluster	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	GZMK,NS,carcinoma,0,1	GZMK	NM_002104	exon5	c.G676A	p.A226T	TTCCACGCTATAG		146	4	0.03	114	0	0		39	1	35	0	0				A	54329635	G	A	54329635	3	1	76	1	0	0	0	0	1	0	0	0	6958	1087	38	1	694	1	GZMK	5	54329635	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10		54329635	126585625	14	5299											
NUDT12	83594	mdanderson.org	37	chr5	102887928	102887928	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaactttacctgttctctaGtgaaccagcgggcatcctct	8	12	2	2	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_031438	exon6	c.C1268A	p.T423N	TCTCTAGTGAACC		45	3	0.07	58	0	0				7	0	0				T	102887928	G	T	102887928	3	4	76	1	0	0	0	0	1	0	0	0	10775	1029	36	3	128	3	NUDT12	5	102887928	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	48558293	102887928	78027332	15	5300											
CAMK4	814	mdanderson.org	37	chr5	110814164	110814164	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attgtgaatattactttatcTccccctggtgggatgaagta	9	7	1	2	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001744	exon9	c.T787C	p.S263P	TTTATCTCCCCCT		44	3	0.07	34	1	0.0294117647				1	0	0				C	110814164	T	C	110814164	3	2	76	1	0	0	0	0	1	0	0	0	2623	1551	54	4	821	4	CAMK4	5	110814164	Missense_Mutation	SNP	T	TCGA-2G-AALZ-01A-11D-A42Y-10	7926236	110814164	70101096	16	5301											
CCDC112	153733	mdanderson.org	37	chr5	114612674	114612674	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacttacaatcaggtgtagGcttcacatcttttaattgat	6	7	3	1	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001040440	exon4	c.C439A	p.P147T	GTGTAGGCTTCAC		43	3	0.07	30	0	0				0	0					T	114612674	G	T	114612674	3	4	76	1	0	0	0	0	1	0	0	0	2767	1203	42	2	1178	2	CCDC112	5	114612674	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	3798510	114612674	66302586	17	5302											
APBB3	10307	mdanderson.org	37	chr5	139941994	139941994	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgggtctgggccagctgctGgatacagttattgactgcaa	14	9	1	1	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_133172	exon5	c.C442A	p.Q148K	GCTGCTGGATACA		32	3	0.09	39	0	0				36	0	0				T	139941994	G	T	139941994	3	4	76	1	0	0	0	0	1	0	0	0	758	1357	47	3	1071	3	APBB3	5	139941994	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	25329320	139941994	40973266	18	5303											
F12	2161	mdanderson.org	37	chr5	176831071	176831071	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggtcagggaaggcggctGctcccgcttcgccggcaagg	16	14	1	0	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_000505	exon10	c.C1039T	p.Q347X	GCGGCTGCTCCCG		24	3	0.13	9	0	0				4	0	0				A	176831071	G	A	176831071	4	1	76	1	0	0	0	0	0	1	0	0	5367	1328	46	2	828	2	F12	5	176831071	Nonsense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	36889077	176831071	4084189	19	5304											
MUC21	394263	hgsc.bcm.edu	37	chr6	30954728	30954728	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cggcacagccaccaactctgAgtccagcacgacctccagtg	9	17	1	1	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	MUC21,bladder,carcinoma,-1,1	MUC21	NM_001010909	exon2	c.A776G	p.E259G	ACTCTGAGTCCAG		70	6	0.09	35	1	0.0285714286		-1	1	0	0					G	30954728	A	G	30954728	3	3	76	1	0	0	0	0	1	0	0	0	10024	304	11	4	782	4	MUC21	6	30954728	Missense_Mutation	SNP	A	TCGA-2G-AALZ-01A-11D-A42Y-10		30954728	140160339	20	5305											
HLA-DMA	3108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	32917166	32917166	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcagatctgagggcagtgcGttccggggtactggaggaaa	17	7	1	2	rs371040586		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	HLA-DMA,NS,carcinoma,-1,2	HLA-DMA	NM_006120	exon4	c.C663T	p.N221N	CAGTGCGTTCCGG		66	11	0.17	65	0	0		-1	2	632	3	0				A	32917166	G	A	32917166	2	1	76	1	0	0	0	0	0	0	0	1	7238	1136	40	1		1	HLA-DMA	6	32917166	Silent	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	1962438	32917166	138197901	21	5306											
MCM7	4176	mdanderson.org	37	chr7	99693551	99693551	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagccaggatggagcagcGggcattgagtgtggtgagaa	19	6	0	2	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_005916	exon11	c.C1441A	p.R481S	AGCAGCGGGCATT		47	4	0.09	56	0	0				309	2	0.01				T	99693551	G	T	99693551	3	4	76	1	0	0	0	0	1	0	0	0	9441	1116	39	1	738	1	MCM7	7	99693551	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10		99693551	59445112	22	5307											
SSPO	23145	broad.mit.edu;mdanderson.org	37	chr7	149510874	149510874	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcggctggcaaggcctgacGgctgcaaccactggtaaggg	15	12	0	1	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_198455	exon71	c.G10159T	p.G3387C	CCTGACGGCTGCA		36	3	0.08	28	0	0				1	0	0				T	149510874	G	T	149510874	1	4	76	0	1	0	0	0	0	0	0	0	15244	1116	39	1		1	SSPO	7	149510874	RNA	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	49817323	149510874	9627789	23	5308											
CTSL2	1515	broad.mit.edu	37	chr9	99797977	99797977	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtacttacagatttcatccTtttaaagttaaagggggaga	9	5	1	2	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	CTSL2	NM_001333	exon7	c.622-2A>G	.	TCATCCTTTTAAA		66	3	0.05	60	0	0		40		0	0					C	99797977	T	C	99797977	5	2	76	1	0	0	0	0	0	0	1	0	4063	1623	56	4	396	4	CTSL2	9	99797977	Splice_Site	SNP	T	TCGA-2G-AALZ-01A-11D-A42Y-10		99797977	41415454	24	5309											
GRIN3A	116443	mdanderson.org	37	chr9	104432598	104432598	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggagtcaaaccaaatggaCtcttccattcatacagagtg	9	9	3	1	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_133445	exon3	c.G2096T	p.S699I	AATGGACTCTTCC		49	3	0.06	50	0	0				1	0	0				A	104432598	C	A	104432598	3	1	76	1	0	0	0	0	1	0	0	0	6823	565	20	3	1279	3	GRIN3A	9	104432598	Missense_Mutation	SNP	C	TCGA-2G-AALZ-01A-11D-A42Y-10	4634621	104432598	36780833	25	5310											
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	114134001	114134001	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tagtctgttttgcaattgatGccatggcaattgcaccctgg	10	9	1	1	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001080398	exon44	c.C5171T	p.A1724V	ATTGATGCCATGG		93	6	0.06	110	0	0				96	21	0.22				A	114134001	G	A	114134001	3	1	76	1	0	0	0	0	1	0	0	0	8212	1319	46	2	914	2	KIAA0368	9	114134001	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	9701403	114134001	27079430	26	5311											
IFIT3	3437	mdanderson.org	37	chr10	91099835	91099835	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaaatgggccagggcgcaGtcagctccagtcccagagag	15	11	1	1	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001031683	exon2	c.G1423A	p.V475I	GGCGCAGTCAGCT		42	3	0.07	48	0	0				98	0	0				A	91099835	G	A	91099835	3	1	76	1	0	0	0	0	1	0	0	0	7567	1029	36	3	1438	3	IFIT3	10	91099835	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10		91099835	44434912	27	5312											
RRP12	23223	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr10	99126540	99126540	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctcctcctcctcctcctcCtcttcttcctcctccacggc	4	23	2	0	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_015179	exon27	c.G3174A	p.E1058E	CTCCTCCTCTTCT		57	6	0.11	45	0	0				20	0	0				T	99126540	C	T	99126540	2	4	76	1	0	0	0	0	0	0	0	1	13737	680	24	3		3	RRP12	10	99126540	Silent	SNP	C	TCGA-2G-AALZ-01A-11D-A42Y-10	8026705	99126540	36408207	28	5313											
PKD2L1	9033	mdanderson.org	37	chr10	102059351	102059351	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagatcttatactcacatcCcagaagtccgccatgctgct	6	13	2	2	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_016112	exon3	c.G474T	p.W158C	CACATCCCAGAAG		37	3	0.08	56	0	0				0	0					A	102059351	C	A	102059351	3	1	76	1	0	0	0	0	1	0	0	0	12014	624	22	3	1999	3	PKD2L1	10	102059351	Missense_Mutation	SNP	C	TCGA-2G-AALZ-01A-11D-A42Y-10	2932811	102059351	33475396	29	5314											
NFKB2	4791	mdanderson.org	37	chr10	104159451	104159451	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggacagcgccacctgctgaCggcgcaggacgagaacggag	17	12	0	2	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001261403	exon13	c.C1445T	p.T482M	TGCTGACGGCGCA		22	2	0.09	14	0	0				44	0	0				T	104159451	C	T	104159451	3	4	76	1	0	0	0	0	1	0	0	0	10422	536	19	1	1495	1	NFKB2	10	104159451	Missense_Mutation	SNP	C	TCGA-2G-AALZ-01A-11D-A42Y-10	2100100	104159451	31375296	30	5315											
CYP17A1	1586	mdanderson.org	37	chr10	104591290	104591290	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaactgatccggctggtgCcactccttctcattgtgatg	10	11	1	3	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_000102	exon7	c.G1218A	p.W406X	CTGGTGCCACTCC		45	3	0.07	65	0	0				108	0	0				T	104591290	C	T	104591290	4	4	76	1	0	0	0	0	0	1	0	0	4170	740	26	2	316	2	CYP17A1	10	104591290	Nonsense_Mutation	SNP	C	TCGA-2G-AALZ-01A-11D-A42Y-10	431839	104591290	30943457	31	5316											
MUC2	4583	mdanderson.org	37	chr11	1092900	1092900	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	accacggtgaccccaaccccAacacccaccggcacacagac	6	21	0	2	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_002457	exon30	c.A4719T	p.P1573P	AACCCCAACACCC		30	5	0.17	29	1	0.0344827586				0	0					T	1092900	A	T	1092900	2	4	76	1	0	0	0	0	0	0	0	1	10022	117	5	5		5	MUC2	11	1092900	Silent	SNP	A	TCGA-2G-AALZ-01A-11D-A42Y-10		1092900	133913616	32	5317											
MAP3K11	4296	broad.mit.edu	37	chr11	65375896	65375896	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgtgctccatgtcgtcacTctcaatgggctgcagcagca	10	13	2	0	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	MAP3K11	NM_002419	exon2	c.A763G	p.S255G	CGTCACTCTCAAT		133	4	0.03	139	0	0		67		107	0	0				C	65375896	T	C	65375896	3	2	76	1	0	0	0	0	1	0	0	0	9294	1551	54	4	1816	4	MAP3K11	11	65375896	Missense_Mutation	SNP	T	TCGA-2G-AALZ-01A-11D-A42Y-10	64282996	65375896	69630620	33	5318											
RIN1	9610	mdanderson.org	37	chr11	66100214	66100214	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatcctgataggctactcGgaggaggtgctatgcaggag	17	7	0	1	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	RIN1,bladder,carcinoma,+1,1	RIN1	NM_004292	exon10	c.C1885A	p.R629R	CTACTCGGAGGAG		18	2	0.11	20	0	0		1	1	50	0	0				T	66100214	G	T	66100214	2	4	76	1	0	0	0	0	0	0	0	1	13422	1124	39	1		1	RIN1	11	66100214	Silent	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	724318	66100214	68906302	34	5319											
POLD3	10714	mdanderson.org	37	chr11	74322571	74322571	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aggttgcagtagtgagagaaGataaattggaaggtaagtgt	15	1	0	3	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_006591	exon4	c.G247T	p.D83Y	AGAGAAGATAAAT		45	3	0.07	49	0	0				7	0	0				T	74322571	G	T	74322571	3	4	76	1	0	0	0	0	1	0	0	0	12239	942	33	3	261	3	POLD3	11	74322571	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	8222357	74322571	60683945	35	5320											
ZNF384	171017	mdanderson.org	37	chr12	6777083	6777083	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggctgttgctgctgctgctGctgctgctgctgctgctgct	14	12	0	0	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001135734	exon11	c.C1531T	p.Q511X	GCTGCTGCTGCTG		49	3	0.06	44	0	0				76	3	0.04				A	6777083	G	A	6777083	4	1	76	1	0	0	0	0	0	1	0	0	17931	1328	46	2	206	2	ZNF384	12	6777083	Nonsense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10		6777083	127074812	36	5321											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	49420275	49420275	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atttgcttcacctcgtcccgCtcaatgtagacccgccggaa	8	15	2	1	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_003482	exon48	c.G15474A	p.E5158E	GTCCCGCTCAATG		65	14	0.22	55	0	0				30	1	0.03				T	49420275	C	T	49420275	2	4	76	1	0	0	0	0	0	0	0	1	9668	796	28	2		2	MLL2	12	49420275	Silent	SNP	C	TCGA-2G-AALZ-01A-11D-A42Y-10	42643192	49420275	84431620	37	5322											
LRP1	4035	mdanderson.org	37	chr12	57567646	57567646	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagaactgcgagtccctgGcctgcaggccaccctcgcac	12	16	0	1	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_002332	exon22	c.G3430T	p.A1144S	TCCCTGGCCTGCA		77	4	0.05	61	0	0				30	0	0				T	57567646	G	T	57567646	3	4	76	1	0	0	0	0	1	0	0	0	8995	1203	42	2	3516	2	LRP1	12	57567646	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	8147371	57567646	76284249	38	5323											
TMTC3	160418	mdanderson.org	37	chr12	88568462	88568462	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacattccacagaaattgGgattgggagtctgaatatac	9	6	1	2	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_181783	exon9	c.G1278T	p.W426C	AAATTGGGATTGG		116	5	0.04	52	0	0				2	0	0				T	88568462	G	T	88568462	3	4	76	1	0	0	0	0	1	0	0	0	16321	1241	43	3	1308	3	TMTC3	12	88568462	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	31000816	88568462	45283433	39	5324											
CHFR	0	broad.mit.edu	37	chr12	133435706	133435707	+	Translation_Start_Site	INS	-	-	CAT													atgcatgtcagcgtctcctcINScatcttgtctggcttcccag					novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	CHFR	NM_001161345	exon8	c.895_896insATG	p.E299delinsME	TCTCCTCCATCTT		103	7	0.07	65	0	0		83		31	0	0				CAT	133435707	-	CAT	133435706	6	5	76	1	0	1	1	0	0	0	0	0	3359	864	30	0		0	CHFR	12	133435706	Translation_Start_Site	INS	-	TCGA-2G-AALZ-01A-11D-A42Y-10	44867244	133435706	416189	40	5325											
APEX1	328	broad.mit.edu	37	chr14	20923824	20923824	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgccgaagcgtgggaaaaAgggagcggtggcggaagacg	19	6	0	1	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	APEX1	NM_080648	exon2	c.A20G	p.K7R	GGAAAAAGGGAGC		106	4	0.04	97	1	0.0103092784		23		274	1	0				G	20923824	A	G	20923824	3	3	76	1	0	0	0	0	1	0	0	0	765	72	3	4	22	4	APEX1	14	20923824	Missense_Mutation	SNP	A	TCGA-2G-AALZ-01A-11D-A42Y-10		20923824	86425716	41	5326											
CDKL1	27109	broad.mit.edu	37	chr14	50798952	50798952	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caactctctgtaccaggtggCaggtaggagatcatttcaaa	10	9	3	1	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	CDKL1	.	.	.	.	AGGTGGCAGGTAG		76	4	0.05	59	0	0		50		6	0	0				T	50798952	C	T	50798952	2	4	76	1	0	0	0	0	0	0	0	1	3175	725	25	2		2	CDKL1	14	50798952	Silent	SNP	C	TCGA-2G-AALZ-01A-11D-A42Y-10	29875128	50798952	56550588	42	5327											
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu	37	chr14	105409580	105409580	+	Frame_Shift_Del	DEL	G	G	-													ggggcccttaacatctatctGggggcccttgaggtccactt					novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_138420	exon7	c.12209delA	p.Q4070fs	CTATCTGGGGGCC		170	11	0.06	126	0	0				2	0	0				-	105409580	G	-	105409580	7	5	76	1	0	1	0	1	0	0	0	0	412	1357	47	0	5183	0	AHNAK2	14	105409580	Frame_Shift_Del	DEL	G	TCGA-2G-AALZ-01A-11D-A42Y-10	54610628	105409580	1939960	43	5328											
GPR176	11245	mdanderson.org	37	chr15	40093937	40093937	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taagaaagagaacagggtttGccagcagggagactttgggc	15	6	0	3	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_007223	exon3	c.C944A	p.A315E	GGGTTTGCCAGCA		45	3	0.07	43	0	0				15	0	0				T	40093937	G	T	40093937	3	4	76	1	0	0	0	0	1	0	0	0	6712	1319	46	2	607	2	GPR176	15	40093937	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10		40093937	62437455	44	5329											
ZNF213	7760	mdanderson.org	37	chr16	3191187	3191187	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttcggctgcagcgactgcGgcaagagcttctcgctgcgc	13	14	1	1	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001134655	exon6	c.G1219A	p.G407S	GACTGCGGCAAGA		47	3	0.06	28	0	0				21	0	0				A	3191187	G	A	3191187	3	1	76	1	0	0	0	0	1	0	0	0	17826	1116	39	1	1237	1	ZNF213	16	3191187	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10		3191187	87163566	45	5330											
CD2BP2	10421	mdanderson.org	37	chr16	30365009	30365009	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctctaggcaataggagcTccaaaagtccctccaagagg	9	12	2	1	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_006110	exon5	c.A488G	p.E163G	AGGAGCTCCAAAA		36	3	0.08	24	0	0				148	0	0				C	30365009	T	C	30365009	3	2	76	1	0	0	0	0	1	0	0	0	3017	1551	54	4	549	4	CD2BP2	16	30365009	Missense_Mutation	SNP	T	TCGA-2G-AALZ-01A-11D-A42Y-10	27173822	30365009	59989744	46	5331											
PLLP	51090	mdanderson.org	37	chr16	57290893	57290893	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctcgccaggcctggtagcTgaagaaggcactcactccat	10	14	1	2	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_015993	exon4	c.A481G	p.S161G	GGTAGCTGAAGAA		33	3	0.09	23	0	0				64	0	0				C	57290893	T	C	57290893	3	2	76	1	0	0	0	0	1	0	0	0	12146	1580	55	4	71	4	PLLP	16	57290893	Missense_Mutation	SNP	T	TCGA-2G-AALZ-01A-11D-A42Y-10	26925884	57290893	33063860	47	5332											
MINK1	50488	broad.mit.edu	37	chr17	4790982	4790982	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaacagcagcagcagctgcAgcagcagcagcagcgagacc	12	13	0	1	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	MINK1	NM_170663	exon12	c.A1127T	p.Q376L	AGCTGCAGCAGCA		94	4	0.04	70	1	0.0142857143		110		35	0	0				T	4790982	A	T	4790982	3	4	76	1	0	0	0	0	1	0	0	0	9634	188	7	5	912	5	MINK1	17	4790982	Missense_Mutation	SNP	A	TCGA-2G-AALZ-01A-11D-A42Y-10		4790982	76404228	48	5333											
KDM6B	23135	broad.mit.edu	37	chr17	7751771	7751771	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cgaagcaggcgtggccccccAacccccgctgaaggagccct	12	18	0	1	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	KDM6B	NM_001080424	exon11	c.A2165C	p.Q722P	CCCCCCAACCCCC		38	11	0.29	30	3	0.1		95		16	0	0				C	7751771	A	C	7751771	3	2	76	1	0	0	0	0	1	0	0	0	8180	130	5	4	2195	4	KDM6B	17	7751771	Missense_Mutation	SNP	A	TCGA-2G-AALZ-01A-11D-A42Y-10	2960789	7751771	73443439	49	5334											
THRA	7067	broad.mit.edu	37	chr17	38240101	38240101	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accccagggcttctttcgccGcacaatccagaagaacctcc	7	17	1	2	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	THRA_ENST00000450525,NS,carcinoma,0,2	THRA	NM_001190918	exon5	c.G236A	p.R79H	TTCGCCGCACAAT		169	5	0.03	144	1	0.0069444444		88	2	92	0	0				A	38240101	G	A	38240101	3	1	76	1	0	0	0	0	1	0	0	0	15932	1087	38	1	250	1	THRA	17	38240101	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	30488330	38240101	42955109	50	5335											
NPLOC4	55666	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	79589248	79589248	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgttatctctccggtcttGtttctattgatgtaaaccga	8	9	3	1	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_017921	exon3	c.C153G	p.N51K	GGTCTTGTTTCTA		75	6	0.08	68	0	0				17	4	0.24				C	79589248	G	C	79589248	3	2	76	1	0	0	0	0	1	0	0	0	10633	1368	48	5	1733	5	NPLOC4	17	79589248	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	41349147	79589248	1605962	51	5336											
MUC16	94025	mdanderson.org	37	chr19	9033260	9033260	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gctagtctgcagcctgaataGaggtattccagactgctatt	10	9	1	3	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_024690	exon10	c.C36366A	p.L12122L	TGAATAGAGGTAT		68	4	0.06	57	0	0				0	0					T	9033260	G	T	9033260	2	4	76	1	0	0	0	0	0	0	0	1	10020	929	33	3		3	MUC16	19	9033260	Silent	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10		9033260	50095723	52	5337											
PPAN	56342	mdanderson.org	37	chr19	10217274	10217274	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtgttcacgcgaggctgcaCgggtcgcaacatccggcagc	14	14	1	0	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_020230	exon2	c.C116T	p.T39M	GCTGCACGGGTCG		32	3	0.09	26	0	0				32	0	0				T	10217274	C	T	10217274	3	4	76	1	0	0	0	0	1	0	0	0	12332	536	19	1	122	1	PPAN	19	10217274	Missense_Mutation	SNP	C	TCGA-2G-AALZ-01A-11D-A42Y-10	1184014	10217274	48911709	53	5338											
ZNF708	7562	mdanderson.org	37	chr19	21476897	21476897	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attagtaaggtttgaggactGtttaaaagctttgccacatt	9	5	0	1	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_021269	exon4	c.C871A	p.Q291K	AGGACTGTTTAAA		19	2	0.11	18	0	0				3	0	0				T	21476897	G	T	21476897	3	4	76	1	0	0	0	0	1	0	0	0	18167	1386	48	3	824	3	ZNF708	19	21476897	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	11259623	21476897	37652086	54	5339											
FFAR2	2867	mdanderson.org	37	chr19	35940862	35940862	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacctgcccaaggtcgtctgCgccctcacgagttttggctt	10	14	2	0	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	FFAR2,NS,carcinoma,0,1	FFAR2	NM_005306	exon1	c.C246T	p.C82C	CGTCTGCGCCCTC		42	3	0.07	47	0	0		0	1	0	0					T	35940862	C	T	35940862	2	4	76	1	0	0	0	0	0	0	0	1	5860	776	27	1		1	FFAR2	19	35940862	Silent	SNP	C	TCGA-2G-AALZ-01A-11D-A42Y-10	14463965	35940862	23188121	55	5340											
CATSPERG	57828	hgsc.bcm.edu	37	chr19	38858705	38858705	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaccaacagccttatctGgaccacgaggaccacaagga	10	13	1	0	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_021185	exon26	c.G2948T	p.W983L	TTATCTGGACCAC		81	4	0.05	64	0	0				1	0	0				T	38858705	G	T	38858705	3	4	76	1	0	0	0	0	1	0	0	0	2710	1357	47	3	3046	3	CATSPERG	19	38858705	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	2917843	38858705	20270278	56	5341											
DYRK1B	9149	mdanderson.org	37	chr19	40321083	40321083	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccagcgctcgccactgcGcacgatgtagtcatggttgt	12	13	1	0	rs367643250	alternate_allele	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_006483	exon4	c.C304A	p.R102S	CACTGCGCACGAT		49	3	0.06	45	0	0				31	0	0				T	40321083	G	T	40321083	3	4	76	1	0	0	0	0	1	0	0	0	4881	1087	38	1	1617	1	DYRK1B	19	40321083	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	1462378	40321083	18807900	57	5342											
SHKBP1	92799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	41094564	41094564	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaccacgtgcggacatggtcTgtgactcgcttccgcggcat	12	13	1	1	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_138392	exon14	c.T1371C	p.S457S	ATGGTCTGTGACT		125	17	0.14	79	0	0				160	11	0.07				C	41094564	T	C	41094564	2	2	76	1	0	0	0	0	0	0	0	1	14338	1567	55	4		4	SHKBP1	19	41094564	Silent	SNP	T	TCGA-2G-AALZ-01A-11D-A42Y-10	773481	41094564	18034419	58	5343											
APOC4	346	mdanderson.org	37	chr19	45448465	45448465	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgagggacctgggtccgcTcaccaaggcctggttcctcg	13	15	1	1	rs5167	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001646	exon3	c.T287A	p.L96H	GTCCGCTCACCAA		60	2	0.03	50	0	0				0	0					A	45448465	T	A	45448465	3	1	76	1	0	0	0	0	1	0	0	0	797	1551	54	5	297	5	APOC4	19	45448465	Missense_Mutation	SNP	T	TCGA-2G-AALZ-01A-11D-A42Y-10	4353901	45448465	13680518	59	5344											
RSPH6A	81492	mdanderson.org	37	chr19	46303719	46303719	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctacttgccactggcatagGcataggccccgggccagagg	13	14	0	1	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_030785	exon5	c.C1901A	p.A634D	GCATAGGCATAGG		30	3	0.1	17	0	0				0	0					T	46303719	G	T	46303719	3	4	76	1	0	0	0	0	1	0	0	0	13758	1203	42	2	260	2	RSPH6A	19	46303719	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	855254	46303719	12825264	60	5345											
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr22	46658494	46658494	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtccagctgcaccgaggcGttgatggtggcctccgcctg	14	14	0	1	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	PKDREJ,colon,carcinoma,0,1	PKDREJ	NM_006071	exon1	c.C726T	p.N242N	CGAGGCGTTGATG		65	8	0.12	55	0	0		0	1	1	0	0				A	46658494	G	A	46658494	2	1	76	1	0	0	0	0	0	0	0	1	12017	1136	40	1		1	PKDREJ	22	46658494	Silent	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10		46658494	4646072	61	5346											
CCDC120	90060	mdanderson.org	37	chrX	48922190	48922190	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catgcgtcttgctcagctcaGccaaggtgagcatcccctgg	11	14	3	1	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001163321	exon6	c.G719T	p.S240I	AGCTCAGCCAAGG		42	3	0.07	26	0	0				1	0	0				T	48922190	G	T	48922190	3	4	76	1	0	0	0	0	1	0	0	0	2774	971	34	2	628	2	CCDC120	23	48922190	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10		48922190	106348370	62	5347											
SHROOM4	57477	bcgsc.ca;mdanderson.org	37	chrX	50438918	50438918	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcttctgggacaaagctGccttgcctccatcttcaatc	6	14	5	0	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	SHROOM4	NM_020717	exon2	c.C137A	p.A46E	AAAGCTGCCTTGC		62	6	0.1	46	0	0		171		0	0					T	50438918	G	T	50438918	3	4	76	1	0	0	0	0	1	0	0	0	14350	1319	46	2	4376	2	SHROOM4	23	50438918	Missense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	1516728	50438918	104831642	63	5348											
GAB3	139716	mdanderson.org	37	chrX	153928305	153928305	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caaactaagccgcttgtctcGgtgtcttaaggattggcctt	10	10	2	0	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001081573	exon5	c.C1099T	p.R367X	TGTCTCGGTGTCT		52	3	0.06	47	0	0				2	0	0				A	153928305	G	A	153928305	4	1	76	1	0	0	0	0	0	1	0	0	6184	1124	39	1	688	1	GAB3	23	153928305	Nonsense_Mutation	SNP	G	TCGA-2G-AALZ-01A-11D-A42Y-10	103489387	153928305	1342255	64	5349											
FAM43B	163933	broad.mit.edu	37	chr1	20880268	20880270	+	In_Frame_Del	DEL	GAG	GAG	-													gcagcatccaggaggaggacGaggaggaggaggaggacgac					novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	GAG	GAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	FAM43B	NM_207334	exon1	c.802_804del	p.268_268del	GAGGACGAGGAGG		7	3	0.43	3	0	0		10		1	0	0				-	20880270	GAG	-	20880268	7	5	77	1	0	1	0	1	0	0	0	0	5598	1059	37	0	804	0	FAM43B	1	20880268	In_Frame_Del	DEL	GAG	TCGA-2G-AAM2-01A-11D-A435-10		20880268	228370353	1	5350											
SEC22B	9554	broad.mit.edu	37	chr1	145109290	145109306	+	RNA	DEL	AAAGAAAAAAAAAAACC	AAAGAAAAAAAAAAACC	-													cgagactccgtctcaaaaaaAaagaaaaaaaaaaaccaaaa					novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	AAAGAAAAAAAAAAACC	AAAGAAAAAAAAAAACC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	.	.	.	.	AAAAAAAAAGAAA		12	4	0.33	12	0	0				1	0	0				-	145109306	AAAGAAAAAAAAAAACC	-	145109290	6	5	77	0	1	1	0	1	0	0	0	0	14042	29	1	0		0	SEC22B	1	145109290	RNA	DEL	AAAGAAAAAAAAAAACC	TCGA-2G-AAM2-01A-11D-A435-10	124229022	145109290	104141331	2	5351											
LOR	4014	broad.mit.edu	37	chr1	153233515	153233515	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggtggcggcggcagcggCggtggtggctgcggcttctt	22	10	1	0	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	LOR	NM_000427	exon2	c.C90T	p.G30G	CAGCGGCGGTGGT		90	4	0.04	54	0	0		19		0	0					T	153233515	C	T	153233515	2	4	77	1	0	0	0	0	0	0	0	1	8941	755	27	1		1	LOR	1	153233515	Silent	SNP	C	TCGA-2G-AAM2-01A-11D-A435-10	8124225	153233515	96017106	3	5352											
APOA1BP	128240	broad.mit.edu	37	chr1	156562379	156562379	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caaccatctattaccccaaaAggcctaacaagcccctcttc	3	17	2	0	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	APOA1BP	NM_144772	exon4	c.A433G	p.R145G	CCCAAAAGGCCTA		114	3	0.03	65	0	0		16		292	0	0				G	156562379	A	G	156562379	3	3	77	1	0	0	0	0	1	0	0	0	778	63	3	4	447	4	APOA1BP	1	156562379	Missense_Mutation	SNP	A	TCGA-2G-AAM2-01A-11D-A435-10	3328864	156562379	92688242	4	5353											
DDX59	83479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	200618324	200618324	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tagtttgcagtccacaaataCtaacactggaggcttaaaga	8	8	0	1	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_001031725	exon6	c.G1345C	p.V449L	CAAATACTAACAC		169	48	0.28	156	0	0				54	19	0.35				G	200618324	C	G	200618324	3	3	77	1	0	0	0	0	1	0	0	0	4399	565	20	5	526	5	DDX59	1	200618324	Missense_Mutation	SNP	C	TCGA-2G-AAM2-01A-11D-A435-10	44055945	200618324	48632297	5	5354											
GCKR	2646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27730108	27730108	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cttaaacttcccagatttccGagatgtccgtggctttctca	7	12	1	2	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	GCKR,rectum,carcinoma,0,1	GCKR	NM_001486	exon13	c.G1073A	p.R358Q	ATTTCCGAGATGT		66	18	0.27	49	0	0		0	1	0	0					A	27730108	G	A	27730108	3	1	77	1	0	0	0	0	1	0	0	0	6333	1058	37	1	1123	1	GCKR	2	27730108	Missense_Mutation	SNP	G	TCGA-2G-AAM2-01A-11D-A435-10		27730108	215469265	6	5355											
ZAK	0	broad.mit.edu	37	chr2	174130916	174130916	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggattcctacgctgctgCtgtgagacggccccaggtgc	13	14	0	1	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	ZAK	NM_016653	exon20	c.C1841T	p.A614V	CTGCTGCTGTGAG		114	5	0.04	101	0	0		62		7	0	0				T	174130916	C	T	174130916	3	4	77	1	0	0	0	0	1	0	0	0	17571	797	28	2	2300	2	ZAK	2	174130916	Missense_Mutation	SNP	C	TCGA-2G-AAM2-01A-11D-A435-10	146400808	174130916	69068457	7	5356											
RAD54L2	23132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	51694124	51694124	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcctgaagatggtcggatGgctgcctcaggtgtgatggc	16	8	1	3	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_015106	exon21	c.G3399A	p.M1133I	TCGGATGGCTGCC		156	36	0.23	108	0	0				17	8	0.47				A	51694124	G	A	51694124	3	1	77	1	0	0	0	0	1	0	0	0	13045	1348	47	3	3477	3	RAD54L2	3	51694124	Missense_Mutation	SNP	G	TCGA-2G-AAM2-01A-11D-A435-10		51694124	146328306	8	5357											
FLT4	2324	broad.mit.edu;ucsc.edu	37	chr5	180052904	180052904	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aacatcttgcagggtgtccaGggccgccagtgccactggat	13	12	1	0	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	FLT4	NM_182925	exon10	c.C1386A	p.P462P	TGTCCAGGGCCGC		44	4	0.09	55	0	0		356		2	0	0				T	180052904	G	T	180052904	2	4	77	1	0	0	0	0	0	0	0	1	5976	987	35	3		3	FLT4	5	180052904	Silent	SNP	G	TCGA-2G-AAM2-01A-11D-A435-10		180052904	862356	9	5358											
MUC21	394263	hgsc.bcm.edu	37	chr6	30955043	30955043	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcacagccaccaactctgGgtccagcacgacctccagtg	9	17	1	0	rs9262385	bycluster;byfrequency	TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	MUC21,NS,neuroblastoma,0,1	MUC21	NM_001010909	exon2	c.G1091A	p.G364E	ACTCTGGGTCCAG		22	2	0.09	20	2	0.1	0.008	0	1	0	0					A	30955043	G	A	30955043	3	1	77	1	0	0	0	0	1	0	0	0	10024	1232	43	3	1097	3	MUC21	6	30955043	Missense_Mutation	SNP	G	TCGA-2G-AAM2-01A-11D-A435-10		30955043	140160024	10	5359											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	51612794	51612794	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcaaaagaagagctggtgGccacaatgactgaattccta	10	8	1	4	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_170724	exon58	c.C9620T	p.A3207V	CTGGTGGCCACAA		180	52	0.29	110	0	0				0	0					A	51612794	G	A	51612794	3	1	77	1	0	0	0	0	1	0	0	0	12018	1203	42	2	2683	2	PKHD1	6	51612794	Missense_Mutation	SNP	G	TCGA-2G-AAM2-01A-11D-A435-10	20657751	51612794	119502273	11	5360											
ARMC2	84071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr6	109274550	109274550	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggcctgctcctgaccacGctgggtgagaaccgcagccc	14	15	0	2	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_032131	exon13	c.G1911A	p.T637T	GACCACGCTGGGT		17	7	0.41	11	0	0				2	0	0				A	109274550	G	A	109274550	2	1	77	1	0	0	0	0	0	0	0	1	950	1074	38	1		1	ARMC2	6	109274550	Silent	SNP	G	TCGA-2G-AAM2-01A-11D-A435-10	57661756	109274550	61840517	12	5361											
MTERF	7978	broad.mit.edu	37	chr7	91503609	91503609	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgttattggaccgaaaaaAggattcaggagaacgttcca	11	6	1	1	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	MTERF	NM_006980	exon3	c.T499C	p.F167L	GAAAAAAGGATTC		106	4	0.04	76	0	0		32		39	0	0				G	91503609	A	G	91503609	3	3	77	1	0	0	0	0	1	0	0	0	9965	72	3	4	704	4	MTERF	7	91503609	Missense_Mutation	SNP	A	TCGA-2G-AAM2-01A-11D-A435-10		91503609	67635054	13	5362											
GIGYF1	64599	ucsc.edu	37	chr7	100282144	100282144	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgatcacctcgcccagcgGctggaagccctcatcgcagc	10	17	2	1	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	GIGYF1	NM_022574	exon13	c.C1558T	p.P520S	CCAGCGGCTGGAA		42	4	0.1	35	0	0		113		172	0	0				A	100282144	G	A	100282144	3	1	77	1	0	0	0	0	1	0	0	0	6418	1203	42	2	1597	2	GIGYF1	7	100282144	Missense_Mutation	SNP	G	TCGA-2G-AAM2-01A-11D-A435-10	8778535	100282144	58856519	14	5363											
ZNF398	57541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	148863275	148863275	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	tgtggcatttgatgatgtctCcatctacttttccactccag	7	11	2	2	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_170686	exon3	c.C446G	p.S149C	ATGTCTCCATCTA		144	41	0.28	123	0	0				106	26	0.25				G	148863275	C	G	148863275	3	3	77	1	0	0	0	0	1	0	0	0	17941	855	30	5	456	5	ZNF398	7	148863275	Missense_Mutation	SNP	C	TCGA-2G-AAM2-01A-11D-A435-10	48581131	148863275	10275388	15	5364											
ST18	9705	broad.mit.edu	37	chr8	53062411	53062411	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaatgctgcttgttttgaAtggggaagaggaaggagttg	16	3	0	3	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	ST18	NM_014682	exon16	c.T1933C	p.F645L	TTTTGAATGGGGA		140	3	0.02	73	0	0		212		0	0					G	53062411	A	G	53062411	3	3	77	1	0	0	0	0	1	0	0	0	15267	101	4	4	1254	4	ST18	8	53062411	Missense_Mutation	SNP	A	TCGA-2G-AAM2-01A-11D-A435-10		53062411	93301611	16	5365											
PPA1	5464	hgsc.bcm.edu	37	chr10	71969413	71969413	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acagtagcttctaagtagccAggtttcagccgtttgacatc	9	10	2	1	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	PPA1,NS,carcinoma,-1,1	PPA1	NM_021129	exon7	c.T540C	p.P180P	GTAGCCAGGTTTC		127	7	0.06	108	2	0.0185185185		-1	1	543	1	0				G	71969413	A	G	71969413	2	3	77	1	0	0	0	0	0	0	0	1	12330	175	7	4		4	PPA1	10	71969413	Silent	SNP	A	TCGA-2G-AAM2-01A-11D-A435-10		71969413	63565334	17	5366											
PPRC1	23082	ucsc.edu	37	chr10	103904028	103904028	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caaaaaggagtgtcctcctcCggctcctgctgacagcttgg	11	13	0	1	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	PPRC1	NM_015062	exon7	c.C3572T	p.P1191L	CTCCTCCGGCTCC		40	4	0.1	45	0	0		151		109	0	0				T	103904028	C	T	103904028	3	4	77	1	0	0	0	0	1	0	0	0	12458	652	23	1	3598	1	PPRC1	10	103904028	Missense_Mutation	SNP	C	TCGA-2G-AAM2-01A-11D-A435-10	31934615	103904028	31630719	18	5367											
VWA2	340706	broad.mit.edu;bcgsc.ca	37	chr10	116050067	116050067	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agggcagctgcgtcctgcagAatgggagctaccgctgcaag	15	11	0	1	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	VWA2	NM_001272046	exon13	c.A2191G	p.N731D	CTGCAGAATGGGA		45	4	0.09	49	0	0		64		4	0	0				G	116050067	A	G	116050067	3	3	77	1	0	0	0	0	1	0	0	0	17298	261	9	4		4	VWA2	10	116050067	Missense_Mutation	SNP	A	TCGA-2G-AAM2-01A-11D-A435-10	12146039	116050067	19484680	19	5368											
ATN1	1822	hgsc.bcm.edu	37	chr12	7045915	7045915	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcagcagcagcaGcagcagcagcagcagcagca	13	14	0	0	rs148885085	bycluster;byfrequency;alternate_allele	TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	ATN1,colon,carcinoma,0,1	ATN1	NM_001007026	exon5	c.G1485T	p.Q495H	GCAGCAGCAGCAG		190	9	0.05	44	1	0.0227272727		0	1	497	1	0				T	7045915	G	T	7045915	3	4	77	1	0	0	0	0	1	0	0	0	1110	962	34	2	1499	2	ATN1	12	7045915	Missense_Mutation	SNP	G	TCGA-2G-AAM2-01A-11D-A435-10		7045915	126805980	20	5369											
LMO3	55885	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	16713458	16713458	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaggcagcgcagtttcccGttacaccaaagagcctagaa	9	12	0	2	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_001243613	exon5	c.C287A	p.T96K	TTTCCCGTTACAC		247	14	0.06	83	0	0				4	1	0.25				T	16713458	G	T	16713458	3	4	77	1	0	0	0	0	1	0	0	0	8893	1145	40	1	224	1	LMO3	12	16713458	Missense_Mutation	SNP	G	TCGA-2G-AAM2-01A-11D-A435-10	9667543	16713458	117138437	21	5370											
DDX11	1663	broad.mit.edu	37	chr12	31238044	31238044	+	Frame_Shift_Del	DEL	A	A	-													aatacgagagtgatgaggagAaaaaggtggcgagcaggtga					novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	DDX11	NM_030653	exon5	c.622delA	p.K208fs	GAGGAGAAAAAGG		805	8	0.01	178	0	0		188		268	0	0				-	31238044	A	-	31238044	7	5	77	1	0	1	0	1	0	0	0	0	4366	247	9	0	636	0	DDX11	12	31238044	Frame_Shift_Del	DEL	A	TCGA-2G-AAM2-01A-11D-A435-10	14524586	31238044	102613851	22	5371											
KRT72	140807	broad.mit.edu;bcgsc.ca	37	chr12	52985290	52985290	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcggccttgctctttagGgcaatctcctcgtactgggc	11	14	2	0	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	KRT72	NM_001146225	exon5	c.C921A	p.A307A	CTTTAGGGCAATC		110	32	0.29	74	0	0		70		1	1	1				T	52985290	G	T	52985290	2	4	77	1	0	0	0	0	0	0	0	1	8527	1219	43	3		3	KRT72	12	52985290	Silent	SNP	G	TCGA-2G-AAM2-01A-11D-A435-10	21747246	52985290	80866605	23	5372											
ANAPC5	51433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	121775139	121775139	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcaacaaattgtttaattcCttctgcaaggaagctggagt	8	7	2	0	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_016237	exon6	c.G714A	p.K238K	TAATTCCTTCTGC		53	30	0.57	62	0	0				154	102	0.66				T	121775139	C	T	121775139	2	4	77	1	0	0	0	0	0	0	0	1	601	680	24	3		3	ANAPC5	12	121775139	Silent	SNP	C	TCGA-2G-AAM2-01A-11D-A435-10	68789849	121775139	12076756	24	5373											
IRS2	8660	hgsc.bcm.edu;broad.mit.edu	37	chr13	110435932	110435932	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgggggagctcatgagcacGtactggtcgctgtccccgcc	14	14	1	1	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_003749	exon1	c.C2469A	p.Y823X	GAGCACGTACTGG		57	16	0.28	64	0	0				11	8	0.73				T	110435932	G	T	110435932	4	4	77	1	0	0	0	0	0	1	0	0	7884	1140	40	1	1555	1	IRS2	13	110435932	Nonsense_Mutation	SNP	G	TCGA-2G-AAM2-01A-11D-A435-10		110435932	4733946	25	5374											
MAPK1IP1L	93487	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	55529374	55529374	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacactcccctgccaaaacCtctgctgtgagcaatacaaa	6	14	1	1	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	MAPK1IP1L	NM_144578	exon3	c.C57T	p.T19T	CAAAACCTCTGCT		72	28	0.39	70	1	0.0142857143		14		227	100	0.44				T	55529374	C	T	55529374	2	4	77	1	0	0	0	0	0	0	0	1	9327	668	24	3		3	MAPK1IP1L	14	55529374	Silent	SNP	C	TCGA-2G-AAM2-01A-11D-A435-10		55529374	51820166	26	5375											
DYNC1H1	1778	broad.mit.edu	37	chr14	102496591	102496591	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaagatcttgataaggtGgaacctgccgtcattgaggc	12	7	2	4	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	DYNC1H1	NM_001376	exon51	c.G9855T	p.V3285V	TAAGGTGGAACCT		54	3	0.06	78	0	0		395		187	0	0				T	102496591	G	T	102496591	2	4	77	1	0	0	0	0	0	0	0	1	4867	1335	47	3		3	DYNC1H1	14	102496591	Silent	SNP	G	TCGA-2G-AAM2-01A-11D-A435-10	46967217	102496591	4852949	27	5376											
CCDC78	124093	ucsc.edu	37	chr16	772996	772996	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcgtggcccggaccagcagCtgtgcccgctcccgttccag	12	17	0	0	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	CCDC78	NM_001031737	exon13	c.G1223A	p.S408N	CAGCAGCTGTGCC		41	4	0.1	32	0	0		26		25	0	0				T	772996	C	T	772996	3	4	77	1	0	0	0	0	1	0	0	0	2872	797	28	2	101	2	CCDC78	16	772996	Missense_Mutation	SNP	C	TCGA-2G-AAM2-01A-11D-A435-10		772996	89581757	28	5377											
SMG1	23049	broad.mit.edu	37	chr16	18844328	18844328	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagctgcgtttcttaagtagGcctgaagagattccactaga	10	8	1	3	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	SMG1	NM_015092	exon51	c.C8726A	p.A2909D	AAGTAGGCCTGAA		172	4	0.02	126	0	0		401		28	0	0				T	18844328	G	T	18844328	3	4	77	1	0	0	0	0	1	0	0	0	14848	1203	42	2	2311	2	SMG1	16	18844328	Missense_Mutation	SNP	G	TCGA-2G-AAM2-01A-11D-A435-10	18071332	18844328	71510425	29	5378											
CCDC102A	92922	ucsc.edu	37	chr16	57552624	57552624	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagacatgcggcccagctcGtcctggtgcgcctccttcag	11	16	2	1	rs141241860	bycluster;byfrequency;by1000genomes	TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	CCDC102A	NM_033212	exon5	c.C951T	p.D317D	CAGCTCGTCCTGG		33	4	0.12	30	0	0		22		35	0	0				A	57552624	G	A	57552624	2	1	77	1	0	0	0	0	0	0	0	1	2754	1136	40	1		1	CCDC102A	16	57552624	Silent	SNP	G	TCGA-2G-AAM2-01A-11D-A435-10	38708296	57552624	32802129	30	5379											
BAHCC1	57597	ucsc.edu	37	chr17	79410887	79410887	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gacctggaggctgaggaggaGaggacgaggctatgtgatga	19	5	0	4	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	BAHCC1	.	.	.	.	GGAGGAGAGGACG		22	4	0.18	11	0	0		110		0	0					T	79410887	G	T	79410887	3	4	77	1	0	0	0	0	1	0	0	0	1294	933	33	3	2121	3	BAHCC1	17	79410887	Missense_Mutation	SNP	G	TCGA-2G-AAM2-01A-11D-A435-10		79410887	1784323	31	5380											
LIG1	3978	bcgsc.ca	37	chr19	48634358	48634358	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgcggctgatgatgtccGggtacttcccagtgttgtct	14	9	1	2	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	LIG1	NM_000234	exon19	c.C1796A	p.P599Q	ATGTCCGGGTACT		45	4	0.09	51	0	0		151		305	0	0				T	48634358	G	T	48634358	3	4	77	1	0	0	0	0	1	0	0	0	8820	1116	39	1	1003	1	LIG1	19	48634358	Missense_Mutation	SNP	G	TCGA-2G-AAM2-01A-11D-A435-10		48634358	10494625	32	5381											
MYH14	79784	ucsc.edu	37	chr19	50764815	50764815	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggggtcctggcccagctGgaagaggagcgagacctgaa	17	10	0	3	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	MYH14	NM_001145809	exon21	c.G2508T	p.L836L	CCAGCTGGAAGAG		39	4	0.1	25	0	0		261		35	0	0				T	50764815	G	T	50764815	2	4	77	1	0	0	0	0	0	0	0	1	10080	1335	47	3		3	MYH14	19	50764815	Silent	SNP	G	TCGA-2G-AAM2-01A-11D-A435-10	2130457	50764815	8364168	33	5382											
CEACAM18	729767	bcgsc.ca	37	chr19	51983738	51983738	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tactggggtgcaaacgacagCgcaggaaacatgattatcag	12	8	1	1	rs61746204	bycluster;by1000genomes	TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	CEACAM18	NM_001080405	exon3	c.C387T	p.S129S	CGACAGCGCAGGA		90	5	0.06	80	0	0		96		0	0					T	51983738	C	T	51983738	2	4	77	1	0	0	0	0	0	0	0	1	3211	767	27	1		1	CEACAM18	19	51983738	Silent	SNP	C	TCGA-2G-AAM2-01A-11D-A435-10	1218923	51983738	7145245	34	5383											
C1orf194	127003	hgsc.bcm.edu	37	chr1	109650648	109650648	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaaggtgtgttgggttcttAtatggcaatttctgcaaaag	12	5	2	0	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_001122961	exon2	c.T57A	p.Y19X	GTTCTTATATGGC		62	7	0.11	70	0	0				2	1	0.5				T	109650648	A	T	109650648	4	4	78	1	0	0	0	0	0	1	0	0	2038	456	16	5	432	5	C1orf194	1	109650648	Nonsense_Mutation	SNP	A	TCGA-2G-AAM3-01A-11D-A435-10		109650648	139599973	1	5384											
DENND1B	163486	hgsc.bcm.edu	37	chr1	197704897	197704897	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tcggcgtacttttccaggggGaatcctcggcagataagctg	13	10	0	1	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_001195216	exon3	c.C112G	p.P38A	CAGGGGGAATCCT		47	16	0.34	47	0	0				3	1	0.33				C	197704897	G	C	197704897	3	2	78	1	0	0	0	0	1	0	0	0	4455	1189	41	5		5	DENND1B	1	197704897	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	88054249	197704897	51545724	2	5385											
IKBKE	0	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	206650044	206650044	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgacatgtatgagcgggcGgtgcttcgaaagccccagca	13	13	0	1	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	IKBKE	NM_001193322	exon7	c.G564A	p.A188A	GCGGGCGGTGCTT		95	5	0.05	96	0	0		77		4	0	0				A	206650044	G	A	206650044	2	1	78	1	0	0	0	0	0	0	0	1	7655	1103	39	1		1	IKBKE	1	206650044	Silent	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	8945147	206650044	42600577	3	5386											
DNAJC27	51277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	25174379	25174379	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgctattggtggtagggcgTttcccgccattttcacataa	10	10	1	0	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_016544	exon6	c.A573G	p.K191K	AGGGCGTTTCCCG		81	15	0.19	95	0	0				3	1	0.33				C	25174379	T	C	25174379	2	2	78	1	0	0	0	0	0	0	0	1	4672	1722	60	4		4	DNAJC27	2	25174379	Silent	SNP	T	TCGA-2G-AAM3-01A-11D-A435-10		25174379	218024994	4	5387											
XDH	7498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	31620583	31620583	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggtctgtagcctgtgcagCggcacagatttcctgtgggc	15	10	1	1	rs148108999	bycluster;by1000genomes	TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_000379	exon6	c.G446A	p.R149H	GTGCAGCGGCACA		88	12	0.14	100	0	0	0			1	1	1				T	31620583	C	T	31620583	3	4	78	1	0	0	0	0	1	0	0	0	17485	768	27	1	3679	1	XDH	2	31620583	Missense_Mutation	SNP	C	TCGA-2G-AAM3-01A-11D-A435-10	6446204	31620583	211578790	5	5388											
ZNF638	27332	hgsc.bcm.edu;bcgsc.ca	37	chr2	71607352	71607355	+	In_Frame_Del	DEL	AACA	AACA	-													aaaatatttttcctacgtagAacaaagaggtgaagaaaaag					novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	AACA	AACA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	ZNF638	NM_001252612	exon9	c.2266_2268del	p.756_756del	ACGTAGAACAAAG		266	66	0.25	298	0	0		179		6	0	0				-	71607355	AACA	-	71607352	7	5	78	1	0	1	0	1	0	0	0	0	18111	260	9	0	2296	0	ZNF638	2	71607352	In_Frame_Del	DEL	AACA	TCGA-2G-AAM3-01A-11D-A435-10	39986769	71607352	171592021	6	5389											
LRP2	4036	broad.mit.edu	37	chr2	170038126	170038126	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccagtctgcccagtagaggTacctgtcagggcaaacacaa	10	13	2	1	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	LRP2	NM_004525	exon52	c.A10001G	p.Y3334C	TAGAGGTACCTGT		143	4	0.03	139	0	0		751		1	0	0				C	170038126	T	C	170038126	3	2	78	1	0	0	0	0	1	0	0	0	9000	1638	57	4	4078	4	LRP2	2	170038126	Missense_Mutation	SNP	T	TCGA-2G-AAM3-01A-11D-A435-10	98430774	170038126	73161247	7	5390											
PGAP1	80055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	197791204	197791204	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agaaccttacctgatactccGggtactcaaacatgtagctc	7	12	1	2	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_024989	exon1	c.C137G	p.P46R	TACTCCGGGTACT		203	37	0.18	206	0	0				2	1	0.5				C	197791204	G	C	197791204	3	2	78	1	0	0	0	0	1	0	0	0	11824	1116	39	5	2739	5	PGAP1	2	197791204	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	27753078	197791204	45408169	8	5391											
IDUA	3425	mdanderson.org	37	chr4	997352	997352	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggtcacgcggctccgcGccctgcccctgacccaaggg	12	20	1	1	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_000203	exon12	c.G1666T	p.A556S	CTCCGCGCCCTGC		35	3	0.09	60	0	0				47	0	0				T	997352	G	T	997352	3	4	78	1	0	0	0	0	1	0	0	0	7547	1087	38	1	1712	1	IDUA	4	997352	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10		997352	190156924	9	5392											
PPARGC1A	10891	broad.mit.edu	37	chr4	23830066	23830066	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtgtgggacttctttttGgaggtgcatttgtctctgct	13	6	2	0	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	PPARGC1A,NS,malignant_melanoma,-1,2	PPARGC1A	NM_013261	exon5	c.C714A	p.S238S	CTTTTTGGAGGTG		177	4	0.02	239	0	0		129	2	0	0					T	23830066	G	T	23830066	2	4	78	1	0	0	0	0	0	0	0	1	12344	1335	47	3		3	PPARGC1A	4	23830066	Silent	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	22832714	23830066	167324210	10	5393											
GRID2	2895	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	94006231	94006232	+	Frame_Shift_Del	DEL	CG	CG	-													tccctccagtctttggcagaCgccatgcatatcccccacct					novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	CG	CG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	GRID2	NM_001510	exon3	c.329_330del	p.110_110del	GGCAGACGCCATG		63	23	0.37	100	0	0		233		0	0					-	94006232	CG	-	94006231	7	5	78	1	0	1	0	1	0	0	0	0	6812	535	19	0	340	0	GRID2	4	94006231	Frame_Shift_Del	DEL	CG	TCGA-2G-AAM3-01A-11D-A435-10	70176165	94006231	97148045	11	5394											
MIER3	166968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	56219302	56219302	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtaactcttctgttacaaCaggcacatgattaacttgtc	7	9	2	1	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_152622	exon13	c.G1303A	p.V435I	TTACAACAGGCAC		96	14	0.15	116	0	0				6	1	0.17				T	56219302	C	T	56219302	3	4	78	1	0	0	0	0	1	0	0	0	9629	478	17	3	350	3	MIER3	5	56219302	Missense_Mutation	SNP	C	TCGA-2G-AAM3-01A-11D-A435-10		56219302	124695958	12	5395											
POLK	51426	broad.mit.edu	37	chr5	74892821	74892821	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agaataccgccagccttactTatgtgaagtgaaaacaggcc	9	10	0	3	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	POLK	NM_016218	exon13	c.T2303C	p.L768S	CTTACTTATGTGA		73	4	0.05	118	0	0		123		6	0	0				C	74892821	T	C	74892821	3	2	78	1	0	0	0	0	1	0	0	0	12251	1764	61	4	2349	4	POLK	5	74892821	Missense_Mutation	SNP	T	TCGA-2G-AAM3-01A-11D-A435-10	18673519	74892821	106022439	13	5396											
RPS14	6208	mdanderson.org	37	chr5	149823857	149823857	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaatcttgttcacagacGgcgaccacggcgacccccct	11	15	2	1	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_001025070	exon5	c.C448A	p.R150S	ACAGACGGCGACC		40	3	0.08	36	0	0				2057	3	0				T	149823857	G	T	149823857	3	4	78	1	0	0	0	0	1	0	0	0	13675	1116	39	1	11	1	RPS14	5	149823857	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	74931036	149823857	31091403	14	5397											
FLT4	2324	mdanderson.org	37	chr5	180038336	180038336	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggacagctgacctggcGgccaggctgtggcgctgcag	17	12	0	1	rs140710164	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	FLT4_ENST00000261937,NS,carcinoma,0,4	FLT4_ENST00000261937	NM_182925	exon27	c.C3681A	p.A1227A	CCTGGCGGCCAGG		43	3	0.07	58	0	0		0	4	27	0	0				T	180038336	G	T	180038336	2	4	78	1	0	0	0	0	0	0	0	1	5976	1103	39	1		1	FLT4	5	180038336	Silent	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	30214479	180038336	876924	15	5398											
JARID2	3720	broad.mit.edu;mdanderson.org	37	chr6	15501152	15501152	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tcccagggggctgtgagctcGacctggcctgctttttccgg	14	13	0	1	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	JARID2	NM_004973	exon8	c.G1960A	p.D654N	GAGCTCGACCTGG		74	4	0.05	57	0	0		135		16	1	0.06				A	15501152	G	A	15501152	3	1	78	1	0	0	0	0	1	0	0	0	7988	1058	37	1	1990	1	JARID2	6	15501152	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10		15501152	155613915	16	5399											
BEND3	57673	mdanderson.org	37	chr6	107390566	107390566	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtggcggatgagcttgatgCgggaggggtccagctgcttc	18	8	0	2	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_001080450	exon5	c.G1829A	p.R610H	TTGATGCGGGAGG		49	3	0.06	58	0	0				4	0	0				T	107390566	C	T	107390566	3	4	78	1	0	0	0	0	1	0	0	0	1397	768	27	1	661	1	BEND3	6	107390566	Missense_Mutation	SNP	C	TCGA-2G-AAM3-01A-11D-A435-10	91889414	107390566	63724501	17	5400											
FAM150A	389658	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	53477732	53477732	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctcccctgcgcccccgggGcctcccgtgggctccgtgcg	14	21	0	0	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	FAM150A	NM_207413	exon1	c.C85T	p.P29S	CCCGGGGCCTCCC		66	8	0.12	49	0	0		6		2	0	0				A	53477732	G	A	53477732	3	1	78	1	0	0	0	0	1	0	0	0	5486	1203	42	2	320	2	FAM150A	8	53477732	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10		53477732	92886290	18	5401											
VPS13B	157680	broad.mit.edu	37	chr8	100866473	100866473	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcactatgccgctggggcccTttttagagcaggtaagaaca	12	10	0	2	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	VPS13B	NM_017890	exon56	c.T10931C	p.L3644P	GGGCCCTTTTTAG		109	4	0.04	84	0	0		811		13	0	0				C	100866473	T	C	100866473	3	2	78	1	0	0	0	0	1	0	0	0	17249	1609	56	4	11343	4	VPS13B	8	100866473	Missense_Mutation	SNP	T	TCGA-2G-AAM3-01A-11D-A435-10	47388741	100866473	45497549	19	5402											
TATDN1	83940	broad.mit.edu	37	chr8	125520718	125520718	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gactattttatacttaccacTccccctacacaccgatctct	2	16	1	0	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	TATDN1	NM_032026	exon8	c.A513G	p.G171G	TACCACTCCCCCT		365	8	0.02	290	1	0.0034482759		29		60	0	0				C	125520718	T	C	125520718	2	2	78	1	0	0	0	0	0	0	0	1	15647	1538	54	4		4	TATDN1	8	125520718	Silent	SNP	T	TCGA-2G-AAM3-01A-11D-A435-10	24654245	125520718	20843304	20	5403											
GSDMD	79792	mdanderson.org	37	chr8	144644686	144644686	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agaccctgttggggccgctcGagctggtgagagggttgggt	19	8	0	2	rs144173624	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_001166237	exon13	c.G1207T	p.E403X	CCGCTCGAGCTGG		39	3	0.08	24	0	0				237	0	0				T	144644686	G	T	144644686	4	4	78	1	0	0	0	0	0	1	0	0	6859	1059	37	1	1241	1	GSDMD	8	144644686	Nonsense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	19123968	144644686	1719336	21	5404											
PRUNE2	158471	ucsc.edu;bcgsc.ca	37	chr9	79253165	79253165	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctggcagaaaacaggcgGcaaacacaatgatggcattt	11	8	1	2	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	PRUNE2	NM_015225	exon13	c.C8768A	p.A2923D	CAGGCGGCAAACA		29	4	0.14	50	0	0		331		12	0	0				T	79253165	G	T	79253165	3	4	78	1	0	0	0	0	1	0	0	0	12689	1203	42	2	526	2	PRUNE2	9	79253165	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10		79253165	61960266	22	5405											
GKAP1	80318	mdanderson.org	37	chr9	86403589	86403589	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcttcaaacatttcagatGtcagctacaaaaaaaaagtt	5	8	3	1	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	GKAP1,rectum,carcinoma,0,1	GKAP1	NM_001135953	exon5	c.C365A	p.T122K	TCAGATGTCAGCT		45	3	0.07	48	0	0		0	1	12	0	0				T	86403589	G	T	86403589	3	4	78	1	0	0	0	0	1	0	0	0	6464	1377	48	3	771	3	GKAP1	9	86403589	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	7150424	86403589	54809842	23	5406											
TNC	3371	bcgsc.ca;mdanderson.org	37	chr9	117846507	117846507	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cacgtggccaccctggcgctGacaggaatgctcttcttgtt	11	13	2	1	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	TNC	NM_002160	exon4	c.C2112A	p.V704V	GGCGCTGACAGGA		55	5	0.09	70	0	0		282		14	0	0				T	117846507	G	T	117846507	2	4	78	1	0	0	0	0	0	0	0	1	16329	1277	45	3		3	TNC	9	117846507	Silent	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	31442918	117846507	23366924	24	5407											
IER5L	389792	mdanderson.org	37	chr9	131940157	131940157	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgttgctgctgctgctGgcgccggtagagctcggcgt	16	12	0	1	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_203434	exon1	c.C175A	p.Q59K	GCTGCTGGCGCCG		24	3	0.13	39	0	0				64	0	0				T	131940157	G	T	131940157	3	4	78	1	0	0	0	0	1	0	0	0	7552	1357	47	3	1043	3	IER5L	9	131940157	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	14093650	131940157	9273274	25	5408											
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	135171355	135171355	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	attggaaggtgcacacacgaGgacacggttttgtttgattt	12	6	0	1	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_015046	exon15	c.C6010G	p.L2004V	ACACGAGGACACG		84	43	0.51	118	0	0				14	7	0.5				C	135171355	G	C	135171355	3	2	78	1	0	0	0	0	1	0	0	0	14194	1000	35	5	2071	5	SETX	9	135171355	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	3231198	135171355	6042076	26	5409											
C9orf172	389813	mdanderson.org	37	chr9	139741764	139741764	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcgcgcgctcgactgggtGgccagcgccaacctgctgga	15	16	0	0	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_001080482	exon1	c.G2898A	p.V966V	CTGGGTGGCCAGC		24	3	0.13	29	0	0				1	0	0				A	139741764	G	A	139741764	2	1	78	1	0	0	0	0	0	0	0	1	2489	1335	47	3		3	C9orf172	9	139741764	Silent	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	4570409	139741764	1471667	27	5410											
JMJD1C	221037	mdanderson.org	37	chr10	64946050	64946050	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gctatctttgcagttcaggaGatcagcttggtggtctccaa	11	9	4	1	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_032776	exon19	c.C6664A	p.L2222I	TCAGGAGATCAGC		41	3	0.07	72	0	0				36	0	0				T	64946050	G	T	64946050	3	4	78	1	0	0	0	0	1	0	0	0	7993	942	33	3	990	3	JMJD1C	10	64946050	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10		64946050	70588697	28	5411											
RRP12	23223	mdanderson.org	37	chr10	99126540	99126540	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctcctcctcctcctcctcCtcttcttcctcctccacggc	4	23	2	0	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_015179	exon27	c.G3174A	p.E1058E	CTCCTCCTCTTCT		64	4	0.06	63	0	0				13	0	0				T	99126540	C	T	99126540	2	4	78	1	0	0	0	0	0	0	0	1	13737	680	24	3		3	RRP12	10	99126540	Silent	SNP	C	TCGA-2G-AAM3-01A-11D-A435-10	34180490	99126540	36408207	29	5412											
NRAP	4892	mdanderson.org	37	chr10	115385817	115385817	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggactcaccccgctctgtaGctcctggctcttcttggcgt	10	15	4	0	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_001261463	exon21	c.C2233A	p.L745I	TCTGTAGCTCCTG		43	3	0.07	69	0	0				0	0					T	115385817	G	T	115385817	3	4	78	1	0	0	0	0	1	0	0	0	10685	962	34	2	3047	2	NRAP	10	115385817	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	16259277	115385817	20148930	30	5413											
MUC2	4583	hgsc.bcm.edu	37	chr11	1092602	1092619	+	In_Frame_Del	DEL	CCACCACTCCCAGCCCTC	CCACCACTCCCAGCCCTC	-													caccactcccagccctccaaCcaccactcccagccctccaa					rs201595190		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	CCACCACTCCCAGCCCTC	CCACCACTCCCAGCCCTC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	MUC2	NM_002457	exon30	c.4420_4437del	p.1474_1479del	CTCCAACCACCAC		119	21	0.18	145	0	0		614		6	0	0				-	1092619	CCACCACTCCCAGCCCTC	-	1092602	7	5	78	1	0	1	0	1	0	0	0	0	10022	507	18	0	4539	0	MUC2	11	1092602	In_Frame_Del	DEL	CCACCACTCCCAGCCCTC	TCGA-2G-AAM3-01A-11D-A435-10		1092602	133913914	31	5414											
STK33	65975	mdanderson.org	37	chr11	8474400	8474400	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagtcccacatgtggcctgCagcatggcttcactcctact	10	14	1	0	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_030906	exon9	c.G840A	p.L280L	GGCCTGCAGCATG		72	4	0.06	93	0	0				9	0	0				T	8474400	C	T	8474400	2	4	78	1	0	0	0	0	0	0	0	1	15355	697	25	2		2	STK33	11	8474400	Silent	SNP	C	TCGA-2G-AAM3-01A-11D-A435-10	7381798	8474400	126532116	32	5415											
MAP3K11	4296	mdanderson.org	37	chr11	65380520	65380520	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgagatcacggtggatgacGggcaccagggcctcgcagtg	16	10	1	2	rs144950486	bycluster;by1000genomes	TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_002419	exon1	c.C708T	p.P236P	GATGACGGGCACC		47	3	0.06	94	0	0	0			84	0	0				A	65380520	G	A	65380520	2	1	78	1	0	0	0	0	0	0	0	1	9294	1103	39	1		1	MAP3K11	11	65380520	Silent	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	56906120	65380520	69625996	33	5416											
GPR152	390212	mdanderson.org	37	chr11	67219522	67219522	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggctgcgggctgctgttggCggtggcaggtgcgacaggct	20	9	0	0	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_206997	exon1	c.G674A	p.R225H	TGTTGGCGGTGGC		33	3	0.09	28	0	0				0	0					T	67219522	C	T	67219522	3	4	78	1	0	0	0	0	1	0	0	0	6697	768	27	1	742	1	GPR152	11	67219522	Missense_Mutation	SNP	C	TCGA-2G-AAM3-01A-11D-A435-10	1839002	67219522	67786994	34	5417											
LRP5	4041	mdanderson.org	37	chr11	68192718	68192718	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgggcaagctgttctggGtggacgcggacctgaagcgc	16	11	1	1	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_002335	exon15	c.G3385T	p.V1129L	TTCTGGGTGGACG		16	2	0.13	25	0	0				66	0	0				T	68192718	G	T	68192718	3	4	78	1	0	0	0	0	1	0	0	0	9004	1261	44	3	3443	3	LRP5	11	68192718	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	973196	68192718	66813798	35	5418											
OAF	220323	bcgsc.ca	37	chr11	120082052	120082052	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgctgccgctgctcgcgcCgctgctgggaacgggtgcgc	17	15	0	0	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	OAF	NM_178507	exon1	c.C65A	p.P22Q	TCGCGCCGCTGCT		20	4	0.2	17	0	0		12		3	0	0				A	120082052	C	A	120082052	3	1	78	1	0	0	0	0	1	0	0	0	10845	652	23	1	67	1	OAF	11	120082052	Missense_Mutation	SNP	C	TCGA-2G-AAM3-01A-11D-A435-10	51889334	120082052	14924464	36	5419											
VSIG2	23584	mdanderson.org	37	chr11	124619760	124619760	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gcataagggattactgggggGaactgcaaaaaaaaaaaaaa	11	4	0	0	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_014312	exon4	c.C430A	p.P144T	TGGGGGGAACTGC		29	2	0.07	41	0	0				84	0	0				T	124619760	G	T	124619760	3	4	78	1	0	0	0	0	1	0	0	0	17283	1174	41	3	569	3	VSIG2	11	124619760	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	4537708	124619760	10386756	37	5420											
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	6127718	6127718	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaatgggcaccacctggatGtctccaggcagcctcttgat	10	14	2	1	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_000552	exon28	c.C4866T	p.D1622D	CTGGATGTCTCCA		378	39	0.1	131	0	0				194	0	0				A	6127718	G	A	6127718	2	1	78	1	0	0	0	0	0	0	0	1	17305	1368	48	3		3	VWF	12	6127718	Silent	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10		6127718	127724177	38	5421											
ATN1	1822	mdanderson.org	37	chr12	7045915	7045915	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcagcagcagcaGcagcagcagcagcagcagca	13	14	0	0	rs148885085	bycluster;byfrequency	TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	ATN1,colon,carcinoma,0,1	ATN1	NM_001007026	exon5	c.G1485A	p.Q495Q	GCAGCAGCAGCAG		180	6	0.03	75	1	0.0133333333	0	0	1	533	1	0				A	7045915	G	A	7045915	2	1	78	1	0	0	0	0	0	0	0	1	1110	962	34	2		2	ATN1	12	7045915	Silent	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	918197	7045915	126805980	39	5422											
ZDHHC17	23390	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	77209655	77209655	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtggatccaactagattGcttttaacattcaatgtttc	7	7	1	1	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	ZDHHC17	NM_015336	exon7	c.G627A	p.L209L	TAGATTGCTTTTA		333	93	0.28	339	1	0.0029498525		45		2	1	0.5				A	77209655	G	A	77209655	2	1	78	1	0	0	0	0	0	0	0	1	17664	1310	46	2		2	ZDHHC17	12	77209655	Silent	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	70163740	77209655	56642240	40	5423											
KL	9365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	33638015	33638015	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggatggtatcaatctttgcGgatactttgcttattcgttt	9	6	2	0	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_004795	exon5	c.G2731A	p.G911R	CTTTGCGGATACT		138	25	0.18	175	0	0				3	2	0.67				A	33638015	G	A	33638015	3	1	78	1	0	0	0	0	1	0	0	0	8373	1117	39	1	2749	1	KL	13	33638015	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10		33638015	81531863	41	5424											
UGGT2	55757	mdanderson.org	37	chr13	96530037	96530037	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccccgaggaggctgttctGtcactttatcaaagcattgt	10	10	3	0	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_020121	exon28	c.C3302A	p.T1101K	TGTTCTGTCACTT		36	3	0.08	73	0	0				11	0	0				T	96530037	G	T	96530037	3	4	78	1	0	0	0	0	1	0	0	0	17001	1377	48	3	1296	3	UGGT2	13	96530037	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	62892022	96530037	18639841	42	5425											
C14orf159	80017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	91655323	91655323	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctctctcgctgtcccatgCccgctcagtgctcatcacca	6	19	5	0	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_001102368	exon9	c.C1004T	p.A335V	CCCATGCCCGCTC		87	17	0.2	106	0	0				84	17	0.2				T	91655323	C	T	91655323	3	4	78	1	0	0	0	0	1	0	0	0	1761	739	26	2	1030	2	C14orf159	14	91655323	Missense_Mutation	SNP	C	TCGA-2G-AAM3-01A-11D-A435-10		91655323	15694217	43	5426											
BDKRB2	624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	96707057	96707057	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttggggagacgctctgccGcgtggtgaatgccattatct	13	10	2	2	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	BDKRB2,NS,carcinoma,0,1	BDKRB2	NM_000623	exon3	c.G392A	p.R131H	TCTGCCGCGTGGT		46	9	0.2	42	0	0		0	1	2	2	1				A	96707057	G	A	96707057	3	1	78	1	0	0	0	0	1	0	0	0	1391	1087	38	1	398	1	BDKRB2	14	96707057	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	5051734	96707057	10642483	44	5427											
LIPC	3990	mdanderson.org	37	chr15	58834136	58834136	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacccgccttgtgggcaaGgaggtcgcggctcttctccg	13	14	2	0	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_000236	exon3	c.G426T	p.K142N	GGGCAAGGAGGTC		30	3	0.1	32	0	0				4	0	0				T	58834136	G	T	58834136	3	4	78	1	0	0	0	0	1	0	0	0	8860	991	35	3	436	3	LIPC	15	58834136	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10		58834136	43697256	45	5428											
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	63935695	63935695	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aacagtccgaacaggagtgaTgtgtccccgcagctgataaa	11	10	0	2	rs375304469		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_003922	exon58	c.A11239G	p.I3747V	GAGTGATGTGTCC		295	92	0.31	358	0	0				10	4	0.4				C	63935695	T	C	63935695	3	2	78	1	0	0	0	0	1	0	0	0	7097	1464	51	4	3430	4	HERC1	15	63935695	Missense_Mutation	SNP	T	TCGA-2G-AAM3-01A-11D-A435-10	5101559	63935695	38595697	46	5429											
TBL3	10607	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	2024635	2024635	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcgatacacacggcccccGtggccaccatggccttcgac	11	17	0	0	rs138822494	alternate_allele	TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	TBL3	NM_006453	exon5	c.G334T	p.V112L	GCCCCCGTGGCCA		74	5	0.07	53	0	0		54		62	0	0				T	2024635	G	T	2024635	3	4	78	1	0	0	0	0	1	0	0	0	15702	1145	40	1	352	1	TBL3	16	2024635	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10		2024635	88330118	47	5430											
BCL7C	9274	mdanderson.org	37	chr16	30905198	30905198	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccggaccttctcgatggtcGccatcaccttcttgatgtca	8	14	4	1	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_004765	exon1	c.C68T	p.A23V	ATGGTCGCCATCA		40	3	0.08	45	0	0				297	1	0				A	30905198	G	A	30905198	3	1	78	1	0	0	0	0	1	0	0	0	1378	1087	38	1	609	1	BCL7C	16	30905198	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	28880563	30905198	59449555	48	5431											
IRX6	79190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	55363165	55363165	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactaccgctgaactgtgcGccgtgcccgcggaggagcga	16	13	0	1	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_024335	exon5	c.G1275T	p.A425A	CTGTGCGCCGTGC		65	15	0.23	60	0	0				9	2	0.22				T	55363165	G	T	55363165	2	4	78	1	0	0	0	0	0	0	0	1	7891	1074	38	1		1	IRX6	16	55363165	Silent	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	24457967	55363165	34991588	49	5432											
MTSS1L	92154	mdanderson.org	37	chr16	70698197	70698197	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgggcagccccgcggtggGcagcccagcagtggaggctg	19	13	0	0	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_138383	exon15	c.C1627T	p.P543S	CGGTGGGCAGCCC		14	2	0.14	32	0	0				31	0	0				A	70698197	G	A	70698197	3	1	78	1	0	0	0	0	1	0	0	0	10010	1203	42	2	620	2	MTSS1L	16	70698197	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	15335032	70698197	19656556	50	5433											
ANKRD11	29123	mdanderson.org	37	chr16	89346584	89346584	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcggggccggcgaaggcGtccgcccagggcaccggctc	16	17	0	0	rs202049186	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_013275	exon9	c.C6366A	p.D2122E	GAAGGCGTCCGCC		22	2	0.09	42	0	0				44	0	0				T	89346584	G	T	89346584	3	4	78	1	0	0	0	0	1	0	0	0	635	1136	40	1	1645	1	ANKRD11	16	89346584	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	18648387	89346584	1008169	51	5434											
MYBBP1A	10514	broad.mit.edu	37	chr17	4458537	4458537	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actcgcgactgtgcttcaatAggccatagcggtcggcaggc	13	12	1	0	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	MYBBP1A	NM_014520	exon1	c.T83C	p.L28P	TTCAATAGGCCAT		115	3	0.03	90	0	0		69		20	0	0				G	4458537	A	G	4458537	3	3	78	1	0	0	0	0	1	0	0	0	10055	420	15	4	4047	4	MYBBP1A	17	4458537	Missense_Mutation	SNP	A	TCGA-2G-AAM3-01A-11D-A435-10		4458537	76736673	52	5435											
CAMTA2	23125	mdanderson.org	37	chr17	4873732	4873732	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagcccctgtccgctcccGcattgaggctccagcctcgg	10	19	0	1	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_001171167	exon17	c.C2977T	p.R993W	GCTCCCGCATTGA		70	4	0.06	66	0	0				74	0	0				A	4873732	G	A	4873732	3	1	78	1	0	0	0	0	1	0	0	0	2632	1086	38	1	778	1	CAMTA2	17	4873732	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	415195	4873732	76321478	53	5436											
NLGN2	57555	mdanderson.org	37	chr17	7311738	7311738	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggcgagtgcgcggtgtgcGgcgcgagctcaacaacgaga	18	11	1	1	rs377690737		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	NLGN2,NS,lymphoid_neoplasm,+1,1	NLGN2	NM_020795	exon1	c.G164T	p.R55L	GTGTGCGGCGCGA		27	3	0.11	29	0	0		1	1	1	0	0				T	7311738	G	T	7311738	3	4	78	1	0	0	0	0	1	0	0	0	10508	1116	39	1	166	1	NLGN2	17	7311738	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	2438006	7311738	73883472	54	5437											
MAPK7	5598	broad.mit.edu	37	chr17	19285118	19285118	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagcgcacccctggaggCtcctgagcctcggaagccgg	13	18	0	1	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	MAPK7,NS,carcinoma,0,2	MAPK7	NM_002749	exon5	c.C1502A	p.A501D	TGGAGGCTCCTGA		62	6	0.1	48	1	0.0208333333		72	2	76	4	0.05				A	19285118	C	A	19285118	3	1	78	1	0	0	0	0	1	0	0	0	9331	797	28	2	1516	2	MAPK7	17	19285118	Missense_Mutation	SNP	C	TCGA-2G-AAM3-01A-11D-A435-10	11973380	19285118	61910092	55	5438											
CRLF3	51379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	29123252	29123252	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tactggtgggcgagatgctaCtgttccatgcttaaaaatgt	11	7	0	1	rs368117589	alternate_allele	TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_015986	exon4	c.G529A	p.V177I	ATGCTACTGTTCC		94	22	0.23	100	0	0				14	3	0.21				T	29123252	C	T	29123252	3	4	78	1	0	0	0	0	1	0	0	0	3911	565	20	3	819	3	CRLF3	17	29123252	Missense_Mutation	SNP	C	TCGA-2G-AAM3-01A-11D-A435-10	9838134	29123252	52071958	56	5439											
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	29162850	29162850	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagctgaatctgaagccaGcttgctaaatgtttccacgc	8	10	1	2	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_024857	exon2	c.G1751T	p.S584I	AAGCCAGCTTGCT		112	16	0.14	119	0	0				2	0	0				T	29162850	G	T	29162850	3	4	78	1	0	0	0	0	1	0	0	0	1075	971	34	2	1757	2	ATAD5	17	29162850	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	39598	29162850	52032360	57	5440											
GNA13	10672	mdanderson.org	37	chr17	63052637	63052637	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggacttgcgttgctgctcGgcctcgccactcgtcagcag	12	14	1	0	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_006572	exon1	c.C75A	p.A25A	CTGCTCGGCCTCG		41	3	0.07	45	0	0				17	0	0				T	63052637	G	T	63052637	2	4	78	1	0	0	0	0	0	0	0	1	6542	1103	39	1		1	GNA13	17	63052637	Silent	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	33889787	63052637	18142573	58	5441											
OTOP3	347741	bcgsc.ca	37	chr17	72931942	72931942	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcgcagtcccgctgggggAgggcgtcgcgggcatcggtc	19	13	0	0	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	OTOP3	NM_178233	exon1	c.A46G	p.R16G	TGGGGGAGGGCGT		35	4	0.11	31	0	0		64		0	0					G	72931942	A	G	72931942	3	3	78	1	0	0	0	0	1	0	0	0	11353	295	11	4	48	4	OTOP3	17	72931942	Missense_Mutation	SNP	A	TCGA-2G-AAM3-01A-11D-A435-10	9879305	72931942	8263268	59	5442											
ZSWIM4	65249	mdanderson.org	37	chr19	13915706	13915706	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcgctgcaagatcacgtcCgtgagctgcggctgtgacaa	13	11	1	3	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_023072	exon3	c.C456A	p.S152S	CACGTCCGTGAGC		43	3	0.07	70	0	0				5	0	0				A	13915706	C	A	13915706	2	1	78	1	0	0	0	0	0	0	0	1	18282	639	23	1		1	ZSWIM4	19	13915706	Silent	SNP	C	TCGA-2G-AAM3-01A-11D-A435-10		13915706	45213277	60	5443											
ATP1A3	478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	42474678	42474678	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaatggacttctttaggttGtcgaagatcaggcggcctgt	13	8	2	1	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_001256214	exon17	c.C2319T	p.D773D	TAGGTTGTCGAAG		91	29	0.32	104	0	0				0	0					A	42474678	G	A	42474678	2	1	78	1	0	0	0	0	0	0	0	1	1129	1368	48	3		3	ATP1A3	19	42474678	Silent	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	28558972	42474678	16654305	61	5444											
ZNF574	64763	bcgsc.ca	37	chr19	42584137	42584155	+	Frame_Shift_Del	DEL	CCGCTGCCCCAGGCACCTA	CCGCTGCCCCAGGCACCTA	-													tgaggagacctcagcagggcCcgctgccccaggcacctacc					novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	CCGCTGCCCCAGGCACCTA	CCGCTGCCCCAGGCACCTA					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	ZNF574	NM_022752	exon2	c.1379_1397del	p.460_466del	CAGGGCCCGCTGC		55	5	0.09	59	0	0		57		23	0	0				-	42584155	CCGCTGCCCCAGGCACCTA	-	42584137	7	5	78	1	0	1	0	1	0	0	0	0	18062	623	22	0	1381	0	ZNF574	19	42584137	Frame_Shift_Del	DEL	CCGCTGCCCCAGGCACCTA	TCGA-2G-AAM3-01A-11D-A435-10	109459	42584137	16544846	62	5445											
MZF1	7593	mdanderson.org	37	chr19	59074032	59074032	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcacaggcgaagggccgctCgccactgtgcacgcgccggt	16	15	0	0	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_003422	exon6	c.G1612A	p.E538K	GCCGCTCGCCACT		10	2	0.2	10	0	0				13	0	0				T	59074032	C	T	59074032	3	4	78	1	0	0	0	0	1	0	0	0	10155	893	31	1	596	1	MZF1	19	59074032	Missense_Mutation	SNP	C	TCGA-2G-AAM3-01A-11D-A435-10	16489895	59074032	54951	63	5446											
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	47588957	47588957	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagactctgacgaggatctGtgcaggtatttccacctggg	12	10	3	2	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	ARFGEF2,NS,carcinoma,0,1	ARFGEF2	NM_006420	exon11	c.G1520C	p.C507S	GGATCTGTGCAGG		96	11	0.11	85	0	0		0	1	4	1	0.25				C	47588957	G	C	47588957	3	2	78	1	0	0	0	0	1	0	0	0	850	1377	48	5	1562	5	ARFGEF2	20	47588957	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10		47588957	15436563	64	5447											
WDR4	10785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	44273835	44273835	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aactgctgtctgcgggcgtcCagctggaagatgtagaccac	13	11	1	2	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_018669	exon9	c.G819A	p.L273L	GGCGTCCAGCTGG		48	6	0.13	36	0	0				15	3	0.2				T	44273835	C	T	44273835	2	4	78	1	0	0	0	0	0	0	0	1	17352	581	21	3		3	WDR4	21	44273835	Silent	SNP	C	TCGA-2G-AAM3-01A-11D-A435-10		44273835	3856060	65	5448											
ITGB2	3689	mdanderson.org	37	chr21	46308737	46308737	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacggggttgttcgacagctGcaggcccggacacgccgcgc	15	15	0	0	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_001127491	exon14	c.C1951A	p.Q651K	ACAGCTGCAGGCC		48	3	0.06	39	0	0				71	0	0				T	46308737	G	T	46308737	3	4	78	1	0	0	0	0	1	0	0	0	7937	1328	46	2	370	2	ITGB2	21	46308737	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	2034902	46308737	1821158	66	5449											
MYO18B	84700	ucsc.edu	37	chr22	26239830	26239830	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agcccaacctctcggccctgGatgcaccccaggtcctgcac	9	19	1	0	rs377148843		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	MYO18B	NM_032608	exon18	c.G3337T	p.D1113Y	GCCCTGGATGCAC		39	4	0.1	41	0	0		322		0	0					T	26239830	G	T	26239830	3	4	78	1	0	0	0	0	1	0	0	0	10113	1174	41	3	3403	3	MYO18B	22	26239830	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10		26239830	25064736	67	5450											
GAS2L1	10634	mdanderson.org	37	chr22	29706886	29706886	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgcccaccaccagtccccGccctgctagcccagtccctg	8	22	0	0	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_152237	exon5	c.G908T	p.R303L	GTCCCCGCCCTGC		24	3	0.13	34	0	0				27	0	0				T	29706886	G	T	29706886	3	4	78	1	0	0	0	0	1	0	0	0	6285	1087	38	1	922	1	GAS2L1	22	29706886	Missense_Mutation	SNP	G	TCGA-2G-AAM3-01A-11D-A435-10	3467056	29706886	21597680	68	5451											
FBLN1	2192	mdanderson.org	37	chr22	45927186	45927186	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aggaacaagaggacccatatCtgaatgaccgctgccgaggt	12	10	1	3	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_006486	exon5	c.C526T	p.L176L	CCATATCTGAATG		44	3	0.07	39	0	0				457	0	0				T	45927186	C	T	45927186	2	4	78	1	0	0	0	0	0	0	0	1	5730	912	32	3		3	FBLN1	22	45927186	Silent	SNP	C	TCGA-2G-AAM3-01A-11D-A435-10	16220300	45927186	5377380	69	5452											
FAM47C	442444	broad.mit.edu	37	chrX	37028425	37028425	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctccgcccggagcctcccAatactggagtgtcccatctc	9	17	2	0	rs145580328		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	FAM47C	NM_001013736	exon1	c.A1942G	p.N648D	CCTCCCAATACTG		123	5	0.04	109	1	0.0091743119		267		0	0					G	37028425	A	G	37028425	3	3	78	1	0	0	0	0	1	0	0	0	5606	130	5	4	1944	4	FAM47C	23	37028425	Missense_Mutation	SNP	A	TCGA-2G-AAM3-01A-11D-A435-10		37028425	118242135	70	5453											
PHC2	1912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	33832793	33832793	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggccttccatgctccctggCacactgctgttgccatctcc	8	18	1	0	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_198040	exon6	c.G900A	p.V300V	CCCTGGCACACTG		82	23	0.28	126	0	0				2	1	0.5				T	33832793	C	T	33832793	2	4	79	1	0	0	0	0	0	0	0	1	11864	697	25	2		2	PHC2	1	33832793	Silent	SNP	C	TCGA-2G-AAM4-01A-11D-A435-10		33832793	215417828	1	5454											
ARID4B	51742	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	235345258	235345258	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tcttcaatgggtttactatcGacattgactggaggtggttt	11	6	2	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_016374	exon20	c.C2976T	p.V992V	ACTATCGACATTG		106	6	0.06	111	0	0				42	3	0.07				A	235345258	G	A	235345258	2	1	79	1	0	0	0	0	0	0	0	1	917	1045	37	1		1	ARID4B	1	235345258	Silent	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	201512465	235345258	13905363	2	5455											
LGALS8	3964	broad.mit.edu	37	chr1	236706865	236706865	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggcttcttttcagaggctGccattcgctgcaaggttgaa	12	9	2	2	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	LGALS8	NM_006499	exon10	c.G681A	p.L227L	GAGGCTGCCATTC		115	4	0.03	129	0	0		42		85	0	0				A	236706865	G	A	236706865	2	1	79	1	0	0	0	0	0	0	0	1	8786	1306	46	2		2	LGALS8	1	236706865	Silent	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	1361607	236706865	12543756	3	5456											
C2orf50	130813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	11273603	11273603	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttgctggtggctgccaggCcccccaggctctgaaggcgc	14	15	2	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_182500	exon1	c.C143A	p.A48D	GCCAGGCCCCCCA		37	14	0.38	38	0	0				6	3	0.5				A	11273603	C	A	11273603	3	1	79	1	0	0	0	0	1	0	0	0	2186	739	26	2	145	2	C2orf50	2	11273603	Missense_Mutation	SNP	C	TCGA-2G-AAM4-01A-11D-A435-10		11273603	231925770	4	5457											
DNMT3A	1788	mdanderson.org	37	chr2	25523020	25523020	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acactcaccggggggtgcttGcgcttcctcccaggccgccc	12	18	1	0	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_175630	exon3	c.C165A	p.R55R	GTGCTTGCGCTTC		33	3	0.09	27	1	0.037037037				45	0	0				T	25523020	G	T	25523020	2	4	79	1	0	0	0	0	0	0	0	1	4703	1306	46	2		2	DNMT3A	2	25523020	Silent	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	14249417	25523020	217676353	5	5458											
SLC8A1	6546	broad.mit.edu;mdanderson.org	37	chr2	40342735	40342735	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaggcgtctgcatactgGtcctgggtggctgccacttt	14	10	1	0	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	SLC8A1	NM_021097	exon10	c.C2580A	p.D860E	ATACTGGTCCTGG		29	12	0.41	25	0	0		221		1	0	0				T	40342735	G	T	40342735	3	4	79	1	0	0	0	0	1	0	0	0	14760	1252	44	3	345	3	SLC8A1	2	40342735	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	14819715	40342735	202856638	6	5459											
SRGAP3	9901	mdanderson.org	37	chr3	9036124	9036124	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgcggtggtacaggagcaGcgaggcccccttcttgaagg	17	11	1	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_014850	exon19	c.C2311A	p.L771M	GGAGCAGCGAGGC		48	3	0.06	43	0	0				9	0	0				T	9036124	G	T	9036124	3	4	79	1	0	0	0	0	1	0	0	0	15202	962	34	2	1004	2	SRGAP3	3	9036124	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10		9036124	188986306	7	5460											
ALS2CL	259173	mdanderson.org	37	chr3	46728533	46728533	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tactgttgcacgtgatgggcGagtggctggtggagggcctg	19	7	0	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001190707	exon5	c.C474A	p.L158L	ATGGGCGAGTGGC		32	3	0.09	62	0	0				16	0	0				T	46728533	G	T	46728533	2	4	79	1	0	0	0	0	0	0	0	1	547	1045	37	1		1	ALS2CL	3	46728533	Silent	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	37692409	46728533	151293897	8	5461											
KIF9	64147	broad.mit.edu	37	chr3	47312777	47312777	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgacttgtgaggtgaactgAcaagcccttaatgaagactc	10	9	0	6	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	KIF9	NM_182902	exon5	c.T541C	p.S181P	GAACTGACAAGCC		89	3	0.03	108	0	0		59		2	0	0				G	47312777	A	G	47312777	3	3	79	1	0	0	0	0	1	0	0	0	8351	275	10	4	1899	4	KIF9	3	47312777	Missense_Mutation	SNP	A	TCGA-2G-AAM4-01A-11D-A435-10	584244	47312777	150709653	9	5462											
IQCF3	401067	mdanderson.org	37	chr3	51864702	51864702	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaatgtgcaatgctctctGcttgttccaggtcccagaga	9	12	1	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001085479	exon7	c.G350T	p.C117F	CTCTCTGCTTGTT		82	4	0.05	93	0	0				0	0					T	51864702	G	T	51864702	3	4	79	1	0	0	0	0	1	0	0	0	7852	1319	46	2	360	2	IQCF3	3	51864702	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	4551925	51864702	146157728	10	5463											
CPN2	1370	mdanderson.org	37	chr3	194062273	194062273	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagggccaggttgaacaGgttgtagttggtgtcgaaga	17	5	0	2	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001080513	exon2	c.C1159A	p.L387M	TGAACAGGTTGTA		56	3	0.05	92	0	0				0	0					T	194062273	G	T	194062273	3	4	79	1	0	0	0	0	1	0	0	0	3833	991	35	3	482	3	CPN2	3	194062273	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	142197571	194062273	3960157	11	5464											
DSPP	1834	bcgsc.ca	37	chr4	88536953	88536953	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcgatagcagtgacagcagcGatagcagtgacagcagtgac	14	9	0	3	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	DSPP	NM_014208	exon5	c.G3139A	p.D1047N	AGCAGCGATAGCA		63	7	0.11	85	0	0		174		0	0					A	88536953	G	A	88536953	3	1	79	1	0	0	0	0	1	0	0	0	4808	1058	37	1	3153	1	DSPP	4	88536953	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10		88536953	102617323	12	5465											
SPOCK3	50859	broad.mit.edu	37	chr4	167656103	167656103	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catcatggtcatcaccaccaTcatcatcatccccttcatct	2	17	8	0	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	SPOCK3,NS,carcinoma,0,4	SPOCK3	NM_016950	exon12	c.A1280G	p.D427G	CCACCATCATCAT		273	4	0.01	435	0	0		90	4	0	0					C	167656103	T	C	167656103	3	2	79	1	0	0	0	0	1	0	0	0	15136	1435	50	4	34	4	SPOCK3	4	167656103	Missense_Mutation	SNP	T	TCGA-2G-AAM4-01A-11D-A435-10	79119150	167656103	23498173	13	5466											
KIAA0947	23379	mdanderson.org	37	chr5	5464352	5464352	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcctcctttgccgcctctGcttgctcctctgatagctac	9	16	2	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_015325	exon13	c.G4905T	p.L1635L	GCCTCTGCTTGCT		43	3	0.07	59	0	0				54	0	0				T	5464352	G	T	5464352	2	4	79	1	0	0	0	0	0	0	0	1	8243	1306	46	2		2	KIAA0947	5	5464352	Silent	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10		5464352	175450908	14	5467											
AMACR	23600	mdanderson.org	37	chr5	34007933	34007933	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcacagacgccgcagcacGgcggctccccgcggctgctt	13	17	0	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_203382	exon1	c.C192A	p.A64A	CAGCACGGCGGCT		12	3	0.25	10	0	0				14	0	0				T	34007933	G	T	34007933	2	4	79	1	0	0	0	0	0	0	0	1	558	1103	39	1		1	AMACR	5	34007933	Silent	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	28543581	34007933	146907327	15	5468											
TCOF1	6949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	149754707	149754707	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtgacagagaggcactggCagccatgaatgcagctcagg	14	10	1	3	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001135243	exon10	c.C1469T	p.A490V	CACTGGCAGCCAT		120	39	0.33	166	0	0				142	53	0.37				T	149754707	C	T	149754707	3	4	79	1	0	0	0	0	1	0	0	0	15767	710	25	2	1507	2	TCOF1	5	149754707	Missense_Mutation	SNP	C	TCGA-2G-AAM4-01A-11D-A435-10	115746774	149754707	31160553	16	5469											
ADAM19	8728	mdanderson.org	37	chr5	156923970	156923970	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgttgtagcagtaggcctggCcgccctcacagggggtacca	14	13	1	0	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_033274	exon14	c.G1526A	p.G509D	GCCTGGCCGCCCT		41	3	0.07	71	0	0				5	0	0				T	156923970	C	T	156923970	3	4	79	1	0	0	0	0	1	0	0	0	239	739	26	2	1270	2	ADAM19	5	156923970	Missense_Mutation	SNP	C	TCGA-2G-AAM4-01A-11D-A435-10	7169263	156923970	23991290	17	5470											
SLU7	10569	mdanderson.org	37	chr5	159831548	159831548	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcttcttttcctctttcaGtttttcttgatgcagctgaa	5	10	5	2	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_006425	exon15	c.C1480A	p.L494M	CTTTCAGTTTTTC		40	3	0.08	45	0	0				213	0	0				T	159831548	G	T	159831548	3	4	79	1	0	0	0	0	1	0	0	0	14808	1020	36	3	288	3	SLU7	5	159831548	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	2907578	159831548	21083712	18	5471											
JARID2	3720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	15497278	15497278	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaacgatgagatgcggtttGtcacgcagattcagcacatc	10	10	3	2	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_004973	exon7	c.G1822A	p.V608I	CGGTTTGTCACGC		139	23	0.17	127	0	0				614	166	0.27				A	15497278	G	A	15497278	3	1	79	1	0	0	0	0	1	0	0	0	7988	1377	48	3	1848	3	JARID2	6	15497278	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10		15497278	155617789	19	5472											
C6orf136	221545	mdanderson.org	37	chr6	30619174	30619174	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccctgcaagcccggtggcGgcttgtggggctgcccgtcc	16	15	0	0	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	C6orf136_ENST00000293604,caecum,carcinoma,0,2	C6orf136_ENST00000293604	NM_001161376	exon4	c.G1238T	p.R413L	GGTGGCGGCTTGT		56	3	0.05	50	0	0		0	2	194	0	0				T	30619174	G	T	30619174	3	4	79	1	0	0	0	0	1	0	0	0	2345	1116	39	1	1252	1	C6orf136	6	30619174	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	15121896	30619174	140495893	20	5473											
PPP2R5D	5528	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	42978951	42978951	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcggagctgccccaggacgTgtacaccatcaaggcactgg	13	13	1	0	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	PPP2R5D	NM_006245	exon16	c.T1736C	p.V579A	AGGACGTGTACAC		206	45	0.22	176	1	0.0056818182		47		186	64	0.34				C	42978951	T	C	42978951	3	2	79	1	0	0	0	0	1	0	0	0	12443	1696	59	4	1798	4	PPP2R5D	6	42978951	Missense_Mutation	SNP	T	TCGA-2G-AAM4-01A-11D-A435-10	12359777	42978951	128136116	21	5474											
FAM46A	55603	mdanderson.org	37	chr6	82461790	82461790	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgccgccgaagtcgccgccTagggggatgtaggggctgca	17	13	0	0	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_017633	exon2	c.A69C	p.L23L	GCCGCCTAGGGGG		50	5	0.1	37	1	0.027027027				0	0					G	82461790	T	G	82461790	2	3	79	1	0	0	0	0	0	0	0	1	5600	1509	53	4		4	FAM46A	6	82461790	Silent	SNP	T	TCGA-2G-AAM4-01A-11D-A435-10	39482839	82461790	88653277	22	5475											
HBS1L	10767	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	135358728	135358728	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttattcggtgttgtgcccttTatgattatggtctttaaatc	8	6	1	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	HBS1L	NM_001145207	exon5	c.A867G	p.I289M	GCCCTTTATGATT		86	31	0.36	72	1	0.0138888889		75		24	7	0.29				C	135358728	T	C	135358728	3	2	79	1	0	0	0	0	1	0	0	0	7027	1744	61	4	2716	4	HBS1L	6	135358728	Missense_Mutation	SNP	T	TCGA-2G-AAM4-01A-11D-A435-10	52896938	135358728	35756339	23	5476											
LMOD2	442721	broad.mit.edu	37	chr7	123302963	123302963	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcccaaaggctgccaccaccTcctcctcctccccctcctcc	3	25	0	0	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	LMOD2_ENST00000458573,NS,carcinoma,0,1	LMOD2	NM_207163	exon2	c.T1323A	p.P441P	ACCACCTCCTCCT		101	4	0.04	81	0	0		62	1	0	0					A	123302963	T	A	123302963	2	1	79	1	0	0	0	0	0	0	0	1	8897	1538	54	5		5	LMOD2	7	123302963	Silent	SNP	T	TCGA-2G-AAM4-01A-11D-A435-10		123302963	35835700	24	5477											
SSPO	23145	mdanderson.org	37	chr7	149522448	149522448	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgccgacctctgggaccGcgttcagtgtctgcagggac	14	13	3	0	rs376457361		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_198455	exon99	c.G14075A	p.R4692H	GGGACCGCGTTCA		46	3	0.07	43	1	0.023255814				1	0	0				A	149522448	G	A	149522448	3	1	79	1	0	0	0	0	1	0	0	0	15244	1074	38	1	14460	1	SSPO	7	149522448	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	26219485	149522448	9616215	25	5478											
TSNARE1	203062	mdanderson.org	37	chr8	143399985	143399985	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcttgttggtctcctgctGtgccgtgtgcctgggggccg	17	11	2	0	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_145003	exon7	c.C904A	p.Q302K	CCTGCTGTGCCGT		26	3	0.12	32	0	0				32	0	0				T	143399985	G	T	143399985	3	4	79	1	0	0	0	0	1	0	0	0	16690	1386	48	3	665	3	TSNARE1	8	143399985	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10		143399985	2964037	26	5479											
EPPK1	83481	mdanderson.org	37	chr8	144946691	144946691	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacctccagcagctcagctGcactcaccgccccgcccatg	7	22	2	0	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_031308	exon1	c.C731T	p.A244V	TCAGCTGCACTCA		18	2	0.11	23	0	0				2	0	0				A	144946691	G	A	144946691	3	1	79	1	0	0	0	0	1	0	0	0	5218	1319	46	2	6535	2	EPPK1	8	144946691	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	1546706	144946691	1417331	27	5480											
CDKN2A	1029	mdanderson.org	37	chr9	21994303	21994303	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgcacgcgcgccgaatccGgagggtcaccaagaacctgc	13	16	1	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_058195	exon1	c.C28A	p.R10R	GAATCCGGAGGGT		21	2	0.1	25	0	0				2	0	0				T	21994303	G	T	21994303	2	4	79	1	0	0	0	0	0	0	0	1	3183	1115	39	1		1	CDKN2A	9	21994303	Silent	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10		21994303	119219128	28	5481											
DCAF12	25853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	34089434	34089434	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcctttgccagtggttagTttcagattctcccctgctag	9	12	2	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_015397	exon8	c.A1179C	p.K393N	GGTTAGTTTCAGA		68	17	0.25	69	0	0				89	17	0.19				G	34089434	T	G	34089434	3	3	79	1	0	0	0	0	1	0	0	0	4287	1722	60	4	190	4	DCAF12	9	34089434	Missense_Mutation	SNP	T	TCGA-2G-AAM4-01A-11D-A435-10	12095131	34089434	107123997	29	5482											
C9orf114	51490	mdanderson.org	37	chr9	131589464	131589464	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctacgctcagtgtgtagGgccgccctgagcaggggagg	19	10	1	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_016390	exon4	c.C215A	p.P72H	GTGTAGGGCCGCC		51	3	0.06	29	0	0				89	0	0				T	131589464	G	T	131589464	3	4	79	1	0	0	0	0	1	0	0	0	2467	1232	43	3	951	3	C9orf114	9	131589464	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	97500030	131589464	9623967	30	5483											
PARD3	56288	broad.mit.edu;mdanderson.org	37	chr10	34408663	34408663	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctgcgtcgccggccgtgcGttcggctggaagaggaaaat	15	11	1	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	PARD3	NM_019619	exon24	c.C3555G	p.N1185K	CCGTGCGTTCGGC		50	3	0.06	76	0	0		131		80	5	0.06				C	34408663	G	C	34408663	3	2	79	1	0	0	0	0	1	0	0	0	11489	1136	40	5	523	5	PARD3	10	34408663	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10		34408663	101126084	31	5484											
TYSND1	219743	broad.mit.edu	37	chr10	71905245	71905245	+	Frame_Shift_Del	DEL	A	A	-													acgtgccgacaggtcactacAaggcggggtgccacagccac					novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	TYSND1	NM_001040273	exon1	c.1098delT	p.L366fs	CACTACAAGGCGG		19	9	0.47	16	0	0		20		27	0	0				-	71905245	A	-	71905245	7	5	79	1	0	1	0	1	0	0	0	0	16878	117	5	0	618	0	TYSND1	10	71905245	Frame_Shift_Del	DEL	A	TCGA-2G-AAM4-01A-11D-A435-10	37496582	71905245	63629502	32	5485											
CDHR1	92211	mdanderson.org	37	chr10	85965594	85965594	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgacagggaacgatggaGcctttgaaattaatgagaca	11	7	0	3	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001171971	exon10	c.G874T	p.A292S	GATGGAGCCTTTG		40	3	0.08	54	0	0				5	0	0				T	85965594	G	T	85965594	3	4	79	1	0	0	0	0	1	0	0	0	3140	971	34	2	912	2	CDHR1	10	85965594	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	14060349	85965594	49569153	33	5486											
TRPM5	29850	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr11	2436203	2436203	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccacaggaacaggtcccgCcaggggttctcgctcttctg	12	15	3	0	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_014555	exon10	c.G1554A	p.W518X	GTCCCGCCAGGGG		19	7	0.37	14	0	0				0	0					T	2436203	C	T	2436203	4	4	79	1	0	0	0	0	0	1	0	0	16649	740	26	2	2003	2	TRPM5	11	2436203	Nonsense_Mutation	SNP	C	TCGA-2G-AAM4-01A-11D-A435-10		2436203	132570313	34	5487											
SMPD1	6609	broad.mit.edu;mdanderson.org	37	chr11	6415755	6415755	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctctgcccgtgctgacaGccctgctctgtgccgccacc	10	19	2	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	SMPD1	NM_000543	exon6	c.G1814T	p.S605I	CTGACAGCCCTGC		38	3	0.08	66	0	0		108		63	0	0				T	6415755	G	T	6415755	3	4	79	1	0	0	0	0	1	0	0	0	14857	971	34	2	1876	2	SMPD1	11	6415755	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	3979552	6415755	128590761	35	5488											
ABCC8	6833	mdanderson.org	37	chr11	17452468	17452468	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggccacggagggcgagaaGtcggcctctttgaagaagct	15	9	1	3	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_000352	exon12	c.C1710A	p.D570E	CGAGAAGTCGGCC		39	3	0.08	68	0	0				0	0					T	17452468	G	T	17452468	3	4	79	1	0	0	0	0	1	0	0	0	58	1020	36	3	3147	3	ABCC8	11	17452468	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	11036713	17452468	117554048	36	5489											
PTPMT1	114971	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	47587435	47587435	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gggtctccaccgtctttgctGagccacctctttgcctcggc	10	16	3	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001143984	exon1	c.G261T	p.L87L	TTTGCTGAGCCAC		129	59	0.46	139	0	0				22	7	0.32				T	47587435	G	T	47587435	2	4	79	1	0	0	0	0	0	0	0	1	12827	1277	45	3		3	PTPMT1	11	47587435	Silent	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	30134967	47587435	87419081	37	5490											
FADS3	3995	mdanderson.org	37	chr11	61645045	61645045	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaagttcaccagggtgaGcagcggcgggccgactgcaa	14	11	2	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_021727	exon7	c.C823T	p.L275F	GGGTGAGCAGCGG		25	3	0.12	34	0	0				259	0	0				A	61645045	G	A	61645045	3	1	79	1	0	0	0	0	1	0	0	0	5398	971	34	2	538	2	FADS3	11	61645045	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	14057610	61645045	73361471	38	5491											
DPP3	10072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	66276583	66276583	+	Frame_Shift_Del	DEL	C	C	-													gcttctggaatacgaggcgtCagctgctggcctcatccgat					novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	DPP3	NM_130443	exon18	c.2074delT	p.S692fs	AGGCGTCAGCTGC		53	20	0.38	59	0	0		61		168	0	0				-	66276583	C	-	66276583	7	5	79	1	0	1	0	1	0	0	0	0	4754	838	29	0	2141	0	DPP3	11	66276583	Frame_Shift_Del	DEL	C	TCGA-2G-AAM4-01A-11D-A435-10	4631538	66276583	68729933	39	5492	15	2									
DPP3	10072	bcgsc.ca	37	chr11	66276584	66276584	+	Silent	SNP	A	A	T													cttctggaatacgaggcgtcAgctgctggcctcatccgatc					novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	DPP3	NM_130443	exon18	c.A2076T	p.S692S	GGCGTCAGCTGCT		53	21	0.4	59	0	0		61		173	6	0.03				T	66276584	A	T	66276584	2	4	79	1	0	0	0	0	0	0	0	1	4754	175	7	5		5	DPP3	11	66276584	Silent	SNP	A	TCGA-2G-AAM4-01A-11D-A435-10	1	66276584	68729932	40	5493	15	2									
CPT1A	1374	mdanderson.org	37	chr11	68530187	68530187	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcccctctcggaagagccGggtcatggaggcctcgtatg	13	14	2	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001876	exon15	c.C1783A	p.R595R	AGAGCCGGGTCAT		43	3	0.07	65	0	0				117	0	0				T	68530187	G	T	68530187	2	4	79	1	0	0	0	0	0	0	0	1	3854	1115	39	1		1	CPT1A	11	68530187	Silent	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	2253603	68530187	66476329	41	5494											
ARHGAP32	9743	mdanderson.org	37	chr11	128910825	128910825	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaaaagtgtactcacctGgttttggcactgagttggtc	11	7	1	2	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001142685	exon10	c.C1001A	p.P334Q	TCACCTGGTTTTG		48	3	0.06	59	0	0				0	0					T	128910825	G	T	128910825	3	4	79	1	0	0	0	0	1	0	0	0	878	1348	47	3	5314	3	ARHGAP32	11	128910825	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	60380638	128910825	6095691	42	5495											
ADAMTS8	11095	mdanderson.org	37	chr11	130286846	130286846	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatcttacctagttcatggGccagggtgtgggccgcctgg	14	10	2	0	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	ADAMTS8_ENST00000414575,NS,carcinoma,0,3	ADAMTS8_ENST00000414575	NM_007037	exon3	c.C1085T	p.A362V	TCATGGGCCAGGG		49	3	0.06	87	0	0		0	3	7	0	0				A	130286846	G	A	130286846	3	1	79	1	0	0	0	0	1	0	0	0	271	1203	42	2	1612	2	ADAMTS8	11	130286846	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	1376021	130286846	4719670	43	5496											
FOXM1	2305	broad.mit.edu	37	chr12	2973635	2973635	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taccaggtatgagctgacccGtggtagcagtggcttcatct	12	10	2	2	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	FOXM1	NM_021953	exon8	c.C1117A	p.R373R	TGACCCGTGGTAG		286	5	0.02	127	0	0		62		669	0	0				T	2973635	G	T	2973635	2	4	79	1	0	0	0	0	0	0	0	1	6051	1144	40	1		1	FOXM1	12	2973635	Silent	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10		2973635	130878260	44	5497											
PRH1	5554	broad.mit.edu	37	chr12	11035035	11035035	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttccttgaggaggagggggAtggcctccctgttggggtgg	19	8	0	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	PRH1	NM_006250	exon4	c.T300C	p.H100H	AGGGGGATGGCCT		1080	10	0.01	423	2	0.0047281324		17		19	0	0				G	11035035	A	G	11035035	2	3	79	1	0	0	0	0	0	0	0	1	12533	330	12	4		4	PRH1	12	11035035	Silent	SNP	A	TCGA-2G-AAM4-01A-11D-A435-10	8061400	11035035	122816860	45	5498											
PRB1	5542	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	11506146	11506146	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggggattgcctcctgctggAggtgggggaccttgaggatt	18	7	0	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	PRB1	NM_199353	exon4	c.T492C	p.P164P	TGCTGGAGGTGGG		1753	67	0.04	683	1	0.0014641288		33		0	0					G	11506146	A	G	11506146	2	3	79	1	0	0	0	0	0	0	0	1	12493	291	11	4		4	PRB1	12	11506146	Silent	SNP	A	TCGA-2G-AAM4-01A-11D-A435-10	471111	11506146	122345749	46	5499											
WBP11	51729	broad.mit.edu	37	chr12	14947586	14947586	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggaggtggaccagggggAgggccaggaggttttctgcc	21	7	1	0	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	WBP11,right_lower_lobe,carcinoma,0,2	WBP11	NM_016312	exon7	c.T606C	p.P202P	AGGGGGAGGGCCA		481	7	0.01	198	1	0.0050505051		66	2	931	1	0				G	14947586	A	G	14947586	2	3	79	1	0	0	0	0	0	0	0	1	17317	291	11	4		4	WBP11	12	14947586	Silent	SNP	A	TCGA-2G-AAM4-01A-11D-A435-10	3441440	14947586	118904309	47	5500											
BRCA2	675	ucsc.edu;bcgsc.ca	37	chr13	32920964	32920964	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaaataattgtttcctagGcacaataaaagatcgaagat	6	5	0	2	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	BRCA2	NM_000059	exon13	c.G6938T	p.G2313V	TCCTAGGCACAAT		35	4	0.11	65	0	0		812		3	0	0				T	32920964	G	T	32920964	3	4	79	1	0	0	0	0	1	0	0	0	1501	1217	42	2	6984	2	BRCA2	13	32920964	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10		32920964	82248914	48	5501											
ACIN1	22985	ucsc.edu	37	chr14	23548787	23548787	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcttgatgctgaacgagaaCgtgaacgtgaccttgatctg	12	8	1	6	rs61741619	bycluster;byfrequency	TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	ACIN1	NM_001164814	exon6	c.G1931A	p.R644H	CGAGAACGTGAAC		121	15	0.12	121	0	0		147		77	10	0.13				T	23548787	C	T	23548787	3	4	79	1	0	0	0	0	1	0	0	0	142	536	19	1	2297	1	ACIN1	14	23548787	Missense_Mutation	SNP	C	TCGA-2G-AAM4-01A-11D-A435-10		23548787	83800753	49	5502											
CD276	80381	mdanderson.org	37	chr15	74000799	74000799	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaagatcaaacagagctgtGaggaggagaatgcaggtgag	16	4	1	5	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001024736	exon7	c.G1489T	p.E497X	AGCTGTGAGGAGG		45	3	0.07	67	0	0				141	0	0				T	74000799	G	T	74000799	4	4	79	1	0	0	0	0	0	1	0	0	3014	1291	45	3	1511	3	CD276	15	74000799	Nonsense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10		74000799	28530593	50	5503											
C15orf40	123207	mdanderson.org	37	chr15	83677284	83677284	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtctcaaaaaaaaaaaaaAgagagcgagacctaccttat	6	7	1	2	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001160113	exon3	c.T382C	p.F128L	AAAAAAAGAGAGC		32	3	0.09	61	0	0				1	0	0				G	83677284	A	G	83677284	3	3	79	1	0	0	0	0	1	0	0	0	1800	72	3	4	559	4	C15orf40	15	83677284	Missense_Mutation	SNP	A	TCGA-2G-AAM4-01A-11D-A435-10	9676485	83677284	18854108	51	5504											
TMEM8A	58986	mdanderson.org	37	chr16	422655	422655	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaaagaggcagggccccaGcatgttccacatgcccctgc	12	15	0	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_021259	exon12	c.C1975A	p.L659M	GCCCCAGCATGTT		41	3	0.07	40	0	0				201	0	0				T	422655	G	T	422655	3	4	79	1	0	0	0	0	1	0	0	0	16273	962	34	2	348	2	TMEM8A	16	422655	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10		422655	89932098	52	5505											
CCDC78	124093	mdanderson.org	37	chr16	776359	776359	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggggcctgtggtggctgcGtgctccataggctagggaac	17	10	0	0	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001031737	exon1	c.C9A	p.H3Q	GGCTGCGTGCTCC		20	3	0.15	30	0	0				5	0	0				T	776359	G	T	776359	3	4	79	1	0	0	0	0	1	0	0	0	2872	1136	40	1	1363	1	CCDC78	16	776359	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	353704	776359	89578394	53	5506											
TPSG1	25823	mdanderson.org	37	chr16	1273502	1273502	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgtgcaccctccgcaggcGgaggctggcctgccatggcc	14	17	0	0	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	TPSG1,colon,carcinoma,+1,1	TPSG1	NM_012467	exon3	c.C166A	p.R56S	GCAGGCGGAGGCT		26	3	0.12	28	1	0.0357142857		1	1	19	0	0				T	1273502	G	T	1273502	3	4	79	1	0	0	0	0	1	0	0	0	16486	1116	39	1	815	1	TPSG1	16	1273502	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	497143	1273502	89081251	54	5507											
TELO2	9894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	1544544	1544544	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgcctggaggagctgtggGccagcttcttcctggagggc	17	12	1	0	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_016111	exon2	c.G262T	p.A88S	CTGTGGGCCAGCT		50	26	0.52	47	0	0				86	41	0.48				T	1544544	G	T	1544544	3	4	79	1	0	0	0	0	1	0	0	0	15815	1203	42	2	264	2	TELO2	16	1544544	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	271042	1544544	88810209	55	5508											
ABCC6	368	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	16297454	16297454	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gccgcctttccttttaaatgCtattgccttgttgtgcctga	8	11	0	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001171	exon8	c.G811C	p.A271P	TAAATGCTATTGC		141	57	0.4	207	0	0				0	0					G	16297454	C	G	16297454	3	3	79	1	0	0	0	0	1	0	0	0	57	797	28	5	3796	5	ABCC6	16	16297454	Missense_Mutation	SNP	C	TCGA-2G-AAM4-01A-11D-A435-10	14752910	16297454	74057299	56	5509											
IL21R	50615	broad.mit.edu;mdanderson.org	37	chr16	27456040	27456040	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttcagacccagtcagagGgtaggtgtgaagctgggatg	15	7	3	3	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	IL21R	NM_181079	exon7	c.G751T	p.E251X	TCAGAGGGTAGGT		48	4	0.08	71	0	0		95		2	0	0				T	27456040	G	T	27456040	5	4	79	1	0	0	0	0	0	0	1	0	7714	1246	43	3	703	3	IL21R	16	27456040	Splice_Site	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	11158586	27456040	62898713	57	5510											
CHST6	4166	mdanderson.org	37	chr16	75513051	75513051	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacgtgccgttggtgcccaGcacgatgccgttgtcacgcg	13	15	1	0	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_021615	exon3	c.C676T	p.L226L	TGCCCAGCACGAT		31	3	0.1	37	0	0				0	0					A	75513051	G	A	75513051	2	1	79	1	0	0	0	0	0	0	0	1	3430	962	34	2		2	CHST6	16	75513051	Silent	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	48057011	75513051	14841702	58	5511											
NBR1	4077	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	41345207	41345207	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actcaccttcagccaggaacCaagtttatcaaacactggag	7	12	3	0	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	NBR1	NM_031862	exon11	c.C1170T	p.T390T	AGGAACCAAGTTT		122	33	0.27	98	1	0.0102040816		55		54	14	0.26				T	41345207	C	T	41345207	2	4	79	1	0	0	0	0	0	0	0	1	10246	581	21	3		3	NBR1	17	41345207	Silent	SNP	C	TCGA-2G-AAM4-01A-11D-A435-10		41345207	39850003	59	5512											
NPC1	4864	mdanderson.org	37	chr18	21136215	21136215	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcaggttacctggtgcaGtatctgtatgtcaagcggag	13	8	2	0	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_000271	exon8	c.C1318A	p.L440M	GGTGCAGTATCTG		46	3	0.07	55	0	0				32	0	0				T	21136215	G	T	21136215	3	4	79	1	0	0	0	0	1	0	0	0	10616	1020	36	3	2590	3	NPC1	18	21136215	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10		21136215	56941033	60	5513											
C19orf26	255057	mdanderson.org	37	chr19	1236043	1236043	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgtcgtcagggctactgtGgcagtggtggtggtggtggt	20	6	1	0	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_152769	exon2	c.C57A	p.A19A	TACTGTGGCAGTG		40	3	0.08	30	0	0				18	0	0				T	1236043	G	T	1236043	2	4	79	1	0	0	0	0	0	0	0	1	1928	1335	47	3		3	C19orf26	19	1236043	Silent	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10		1236043	57892940	61	5514											
SIRT6	51548	mdanderson.org	37	chr19	4174679	4174679	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggggcagggctggtgggccGctcccgtttggggctggcgg	23	10	0	0	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_016539	exon8	c.C1003T	p.R335W	TGGGCCGCTCCCG		32	3	0.09	35	0	0				115	0	0				A	4174679	G	A	4174679	3	1	79	1	0	0	0	0	1	0	0	0	14396	1086	38	1	68	1	SIRT6	19	4174679	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	2938636	4174679	54954304	62	5515											
FCGBP	8857	mdanderson.org	37	chr19	40421236	40421236	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggcagcgctgcgttctgGccgcatgagccgaccagcag	15	14	1	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_003890	exon5	c.C2685T	p.G895G	GTTCTGGCCGCAT		44	3	0.07	51	0	0				0	0					A	40421236	G	A	40421236	2	1	79	1	0	0	0	0	0	0	0	1	5810	1190	42	2		2	FCGBP	19	40421236	Silent	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	36246557	40421236	18707747	63	5516											
RTN2	6253	mdanderson.org	37	chr19	45997951	45997951	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagagggcgctcggatggaGgcgcggtgtcaggatcaccc	17	12	2	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_206900	exon3	c.C392A	p.P131H	GATGGAGGCGCGG		45	3	0.07	56	0	0				49	0	0				T	45997951	G	T	45997951	3	4	79	1	0	0	0	0	1	0	0	0	13777	1000	35	3	1281	3	RTN2	19	45997951	Missense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	5576715	45997951	13131032	64	5517											
THBD	7056	mdanderson.org	37	chr20	23028534	23028534	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcttcttgcgcaggtggcaGaggagcgccaaaagcgccac	14	12	1	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_000361	exon1	c.C1608A	p.L536L	GTGGCAGAGGAGC		46	3	0.07	74	0	0				1	0	0				T	23028534	G	T	23028534	2	4	79	1	0	0	0	0	0	0	0	1	15911	929	33	3		3	THBD	20	23028534	Silent	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10		23028534	39996986	65	5518											
ERGIC3	51614	mdanderson.org	37	chr20	34136278	34136278	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	acaggtgctgtaacacctgtGaagatgtgcgggaggcatat	14	7	0	2	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_015966	exon6	c.G478T	p.E160X	ACCTGTGAAGATG		85	5	0.06	75	0	0				731	0	0				T	34136278	G	T	34136278	4	4	79	1	0	0	0	0	0	1	0	0	5253	1291	45	3	500	3	ERGIC3	20	34136278	Nonsense_Mutation	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10	11107744	34136278	28889242	66	5519											
SGSM1	129049	mdanderson.org	37	chr22	25255730	25255730	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctgtccctgcaccagacGgctgacgtcatgaccttgaa	9	14	1	4	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001098497	exon9	c.G849T	p.T283T	CCAGACGGCTGAC		34	3	0.09	64	0	0				7	0	0				T	25255730	G	T	25255730	2	4	79	1	0	0	0	0	0	0	0	1	14275	1103	39	1		1	SGSM1	22	25255730	Silent	SNP	G	TCGA-2G-AAM4-01A-11D-A435-10		25255730	26048836	67	5520											
MN1	4330	broad.mit.edu	37	chr22	28195494	28195494	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gggggctgctgctgagggggTggcggggcctgctggggagg	26	7	0	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	MN1	NM_002430	exon1	c.A1038C	p.P346P	AGGGGGTGGCGGG		63	21	0.33	45	10	0.2222222222		122		10	0	0				G	28195494	T	G	28195494	2	3	79	1	0	0	0	0	0	0	0	1	9721	1683	59	4		4	MN1	22	28195494	Silent	SNP	T	TCGA-2G-AAM4-01A-11D-A435-10	2939764	28195494	23109072	68	5521											
CSDC2	27254	mdanderson.org	37	chr22	41970829	41970829	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagaagttccaggccgtggAggtggtgctcactcagctgg	15	11	2	1	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_014460	exon4	c.A392G	p.E131G	CCGTGGAGGTGGT		46	3	0.07	48	0	0				1	0	0				G	41970829	A	G	41970829	3	3	79	1	0	0	0	0	1	0	0	0	3953	304	11	4	402	4	CSDC2	22	41970829	Missense_Mutation	SNP	A	TCGA-2G-AAM4-01A-11D-A435-10	13775335	41970829	9333737	69	5522											
ARHGAP36	158763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	130215791	130215791	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ccgcaggacgaagatggtatCgatacacagcctctctgagc	11	12	1	2	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_144967	exon2	c.C152G	p.S51W	TGGTATCGATACA		98	41	0.42	66	0	0				4	2	0.5				G	130215791	C	G	130215791	3	3	79	1	0	0	0	0	1	0	0	0	880	893	31	5	154	5	ARHGAP36	23	130215791	Missense_Mutation	SNP	C	TCGA-2G-AAM4-01A-11D-A435-10		130215791	25054769	70	5523											
SCNN1D	6339	broad.mit.edu	37	chr1	1222192	1222192	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagctgctggacgagtttgCcagggagaacattgactccc	14	10	0	2	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	SCNN1D	NM_001130413	exon8	c.C956T	p.A319V	AGTTTGCCAGGGA		183	4	0.02	279	0	0		60		6	0	0				T	1222192	C	T	1222192	3	4	80	1	0	0	0	0	1	0	0	0	13982	739	26	2	680	2	SCNN1D	1	1222192	Missense_Mutation	SNP	C	TCGA-2X-A9D5-01A-11D-A435-10		1222192	248028429	1	5524											
SSU72	29101	mdanderson.org	37	chr1	1477477	1477477	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agacggtgtgcagaaaggtgCggccactcttctcctcgaac	12	12	2	2	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	SSU72,caecum,carcinoma,0,1	SSU72	NM_014188	exon5	c.G554A	p.R185H	AAGGTGCGGCCAC		42	3	0.07	55	0	0		0	1	508	0	0				T	1477477	C	T	1477477	3	4	80	1	0	0	0	0	1	0	0	0	15257	768	27	1	34	1	SSU72	1	1477477	Missense_Mutation	SNP	C	TCGA-2X-A9D5-01A-11D-A435-10	255285	1477477	247773144	2	5525											
COL8A2	1296	mdanderson.org	37	chr1	36564848	36564848	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcccctcgtattcctggcTccccccgaagccccggctgc	10	20	0	0	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_005202	exon2	c.A434G	p.E145G	CCTGGCTCCCCCC		23	3	0.13	45	1	0.0222222222				5	0	0				C	36564848	T	C	36564848	3	2	80	1	0	0	0	0	1	0	0	0	3729	1551	54	4	1681	4	COL8A2	1	36564848	Missense_Mutation	SNP	T	TCGA-2X-A9D5-01A-11D-A435-10	35087371	36564848	212685773	3	5526											
ABCA4	24	mdanderson.org	37	chr1	94528293	94528293	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ttccacgggatcagctctggGaccagaatcccaatacctga	9	13	2	2	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_000350	exon13	c.C1777A	p.P593T	CTCTGGGACCAGA		27	3	0.11	47	0	0				0	0					T	94528293	G	T	94528293	3	4	80	1	0	0	0	0	1	0	0	0	34	1174	41	3	5196	3	ABCA4	1	94528293	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	57963445	94528293	154722328	4	5527											
OVGP1	5016	bcgsc.ca	37	chr1	111957533	111957533	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgactcacaggggtcacagaCtgatgacccacaggggtcag	13	11	3	4	rs112145355	bycluster	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	OVGP1	NM_002557	exon11	c.G1590A	p.Q530Q	CACAGACTGATGA		107	17	0.16	94	1	0.0106382979		177		4	0	0				T	111957533	C	T	111957533	2	4	80	1	0	0	0	0	0	0	0	1	11371	564	20	3		3	OVGP1	1	111957533	Silent	SNP	C	TCGA-2X-A9D5-01A-11D-A435-10	17429240	111957533	137293088	5	5528											
VPS45	11311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	150053547	150053547	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tatctgctgaaaatgatgaaTtctatgctaatgtaggtggt	10	4	2	3	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	VPS45,NS,carcinoma,-2,1	VPS45	NM_007259	exon8	c.T811G	p.F271V	GATGAATTCTATG		108	15	0.14	99	0	0		-2	1	27	11	0.41				G	150053547	T	G	150053547	3	3	80	1	0	0	0	0	1	0	0	0	17270	1493	52	4	841	4	VPS45	1	150053547	Missense_Mutation	SNP	T	TCGA-2X-A9D5-01A-11D-A435-10	38096014	150053547	99197074	6	5529											
IVL	3713	broad.mit.edu	37	chr1	152883285	152883285	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ggcaactggagcagctggagGagcaggaggggcagctgaag	20	7	0	1	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	IVL,NS,carcinoma,0,1	IVL	NM_005547	exon2	c.G1012C	p.E338Q	CTGGAGGAGCAGG		111	5	0.05	129	2	0.015503876		100	1	0	0					C	152883285	G	C	152883285	3	2	80	1	0	0	0	0	1	0	0	0	7972	1175	41	5	1014	5	IVL	1	152883285	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	2829738	152883285	96367336	7	5530											
CHRNB2	1141	mdanderson.org	37	chr1	154544498	154544498	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcgtcggtgcaggggttggCcggggccttcggggctgagc	21	11	0	1	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_000748	exon5	c.C1199T	p.A400V	GGTTGGCCGGGGC		12	2	0.17	15	0	0				4	0	0				T	154544498	C	T	154544498	3	4	80	1	0	0	0	0	1	0	0	0	3413	739	26	2	1217	2	CHRNB2	1	154544498	Missense_Mutation	SNP	C	TCGA-2X-A9D5-01A-11D-A435-10	1661213	154544498	94706123	8	5531											
APOA1BP	128240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	156563324	156563324	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagggactcactgtgcccaTtgccagcatcgacattccct	9	14	1	0	rs200378020	bycluster	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_144772	exon5	c.T641C	p.I214T	TGCCCATTGCCAG		107	11	0.1	110	0	0				385	116	0.3				C	156563324	T	C	156563324	3	2	80	1	0	0	0	0	1	0	0	0	778	1493	52	4	659	4	APOA1BP	1	156563324	Missense_Mutation	SNP	T	TCGA-2X-A9D5-01A-11D-A435-10	2018826	156563324	92687297	9	5532											
APOA2	336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	161193189	161193189	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	acagttgctgcgagcagcttCatgttggtaacagtggggag	15	7	1	0	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001643	exon2	c.G3T	p.M1I	CAGCTTCATGTTG		94	13	0.14	66	0	0				49	0	0				A	161193189	C	A	161193189	3	1	80	1	0	0	0	0	1	0	0	0	779	826	29	3	311	3	APOA2	1	161193189	Missense_Mutation	SNP	C	TCGA-2X-A9D5-01A-11D-A435-10	4629865	161193189	88057432	10	5533											
ATP2B4	493	mdanderson.org	37	chr1	203669390	203669390	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaatgatctgaagattgatGagagctctctgacaggggaa	14	5	2	6	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001684	exon5	c.G706T	p.E236X	ATTGATGAGAGCT		74	4	0.05	86	0	0				19	0	0				T	203669390	G	T	203669390	4	4	80	1	0	0	0	0	0	1	0	0	1141	1291	45	3	720	3	ATP2B4	1	203669390	Nonsense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	42476201	203669390	45581231	11	5534											
SRP9	6726	broad.mit.edu	37	chr1	225976948	225976948	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaatttctgacagtgtttgGtgtataaaacagaccaagct	8	6	1	2	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	SRP9	NM_003133	exon3	c.G148T	p.V50L	TGTTTGGTGTATA		445	5	0.01	445	0	0		5		78	0	0				T	225976948	G	T	225976948	3	4	80	1	0	0	0	0	1	0	0	0	15213	1261	44	3	270	3	SRP9	1	225976948	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	22307558	225976948	23273673	12	5535											
PTCD3	55037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	86361968	86361968	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cctaagcttctcagcttcagGtggcatttgctgactgtgct	10	11	2	1	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_017952	exon21	c.G1636C	p.V546L	CTTCAGGTGGCAT		201	38	0.19	210	0	0				169	15	0.09				C	86361968	G	C	86361968	3	2	80	1	0	0	0	0	1	0	0	0	12777	1261	44	5	1718	5	PTCD3	2	86361968	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10		86361968	156837405	13	5536											
FAM171B	165215	hgsc.bcm.edu	37	chr2	187559029	187559029	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccgacctcagcctcatccaAcagcagcagcagcagcagca	8	17	2	0	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_177454	exon1	c.A129G	p.Q43Q	CATCCAACAGCAG		49	4	0.08	58	0	0				2	0	0				G	187559029	A	G	187559029	2	3	80	1	0	0	0	0	0	0	0	1	5520	40	2	4		4	FAM171B	2	187559029	Silent	SNP	A	TCGA-2X-A9D5-01A-11D-A435-10	101197061	187559029	55640344	14	5537											
SCAP	22937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	47455365	47455365	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtccagcttctccagcacAgagggcacatacaccaggct	9	15	1	1	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_012235	exon23	c.T3819C	p.S1273S	CAGCACAGAGGGC		127	21	0.17	115	0	0				278	71	0.26				G	47455365	A	G	47455365	2	3	80	1	0	0	0	0	0	0	0	1	13929	175	7	4		4	SCAP	3	47455365	Silent	SNP	A	TCGA-2X-A9D5-01A-11D-A435-10		47455365	150567065	15	5538											
BSN	8927	mdanderson.org	37	chr3	49700906	49700906	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaaataccctctggggcagCatcacgccagccacagacac	9	16	2	1	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_003458	exon7	c.C11315T	p.A3772V	GGGCAGCATCACG		38	3	0.08	36	0	0				36	0	0				T	49700906	C	T	49700906	3	4	80	1	0	0	0	0	1	0	0	0	1532	710	25	2	11341	2	BSN	3	49700906	Missense_Mutation	SNP	C	TCGA-2X-A9D5-01A-11D-A435-10	2245541	49700906	148321524	16	5539											
SEMA3G	56920	mdanderson.org	37	chr3	52475647	52475647	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccgaggacctccacttcGgaagatcatggcctctcgcc	11	15	2	1	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	SEMA3G,colon,carcinoma,0,1	SEMA3G	NM_020163	exon6	c.C610A	p.R204R	CACTTCGGAAGAT		52	3	0.06	60	0	0		0	1	8	0	0				T	52475647	G	T	52475647	2	4	80	1	0	0	0	0	0	0	0	1	14083	1124	39	1		1	SEMA3G	3	52475647	Silent	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	2774741	52475647	145546783	17	5540											
MUC4	4585	broad.mit.edu	37	chr3	195507694	195507694	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaggaagcgtcggtgacaAgaagaggggtggtgtcacct	17	7	1	4	rs369368122	bycluster	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	MUC4	NM_018406	exon2	c.T10757C	p.L3586P	GTGACAAGAAGAG		70	11	0.16	75	1	0.0133333333		1505		2	0	0				G	195507694	A	G	195507694	3	3	80	1	0	0	0	0	1	0	0	0	10025	72	3	4		4	MUC4	3	195507694	Missense_Mutation	SNP	A	TCGA-2X-A9D5-01A-11D-A435-10	143032047	195507694	2514736	18	5541											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	55599340	55599340	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gacatcaagaatgattctaaTtatgtggttaaaggaaacgt	9	4	2	2	rs121913514	alternate_allele	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	KIT,NS,malignant_melanoma,+2,48	KIT	NM_000222	exon17	c.T2466G	p.N822K	TTCTAATTATGTG		89	36	0.4	68	0	0		2	48	541	410	0.76				G	55599340	T	G	55599340	3	3	80	1	0	0	0	0	1	0	0	0	8371	1490	52	4	2532	4	KIT	4	55599340	Missense_Mutation	SNP	T	TCGA-2X-A9D5-01A-11D-A435-10		55599340	135554936	19	5542											
ART3	419	mdanderson.org	37	chr4	77003112	77003112	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaccagcaattagatactGtgtgggaaaatgcaaaagcc	10	9	0	1	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001130016	exon3	c.G205T	p.V69L	GATACTGTGTGGG		52	3	0.06	56	0	0				0	0					T	77003112	G	T	77003112	3	4	80	1	0	0	0	0	1	0	0	0	997	1377	48	3	211	3	ART3	4	77003112	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	21403772	77003112	114151164	20	5543											
NR3C2	4306	mdanderson.org	37	chr4	149357077	149357077	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttattagtgttcgaaggGctggaaacagagcaccttga	12	7	0	2	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001166104	exon2	c.C936A	p.S312R	CGAAGGGCTGGAA		71	5	0.07	109	0	0				0	0					T	149357077	G	T	149357077	3	4	80	1	0	0	0	0	1	0	0	0	10678	1194	42	2	2050	2	NR3C2	4	149357077	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	72353965	149357077	41797199	21	5544											
C5orf51	285636	mdanderson.org	37	chr5	41917162	41917162	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tggctatgatgtacagtggaGaaatgtgttactggggatcg	15	4	0	2	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	C5orf51,colon,carcinoma,0,1	C5orf51	NM_175921	exon6	c.G646T	p.E216X	AGTGGAGAAATGT		50	3	0.06	63	0	0		0	1	18	0	0				T	41917162	G	T	41917162	4	4	80	1	0	0	0	0	0	1	0	0	2323	943	33	3	668	3	C5orf51	5	41917162	Nonsense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10		41917162	138998098	22	5545											
DND1	373863	mdanderson.org	37	chr5	140052386	140052386	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaggcggaactcgtagaggCggcccacgcgctggaacagc	15	13	1	1	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_194249	exon3	c.G248A	p.R83H	TAGAGGCGGCCCA		15	2	0.13	17	0	0				135	0	0				T	140052386	C	T	140052386	3	4	80	1	0	0	0	0	1	0	0	0	4693	768	27	1	821	1	DND1	5	140052386	Missense_Mutation	SNP	C	TCGA-2X-A9D5-01A-11D-A435-10	98135224	140052386	40862874	23	5546											
FOXC1	2296	mdanderson.org	37	chr6	1610746	1610746	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgccctacctcggcggcgaGcagagctactaccgcgcggc	14	16	0	1	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001453	exon1	c.G66T	p.E22D	CGGCGAGCAGAGC		42	3	0.07	56	0	0				0	0					T	1610746	G	T	1610746	3	4	80	1	0	0	0	0	1	0	0	0	6026	962	34	2	68	2	FOXC1	6	1610746	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10		1610746	169504321	24	5547											
RUNX2	860	hgsc.bcm.edu	37	chr6	45390445	45390445	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcaacagcagcagcagcaAcagcagcagcagcagcagca	11	14	0	0	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	RUNX2_ENST00000352853,lower_third,carcinoma,0,2	RUNX2_ENST00000352853	NM_001024630	exon3	c.A174G	p.Q58Q	GCAGCAACAGCAG		49	3	0.06	51	0	0		0	2	1	0	0				G	45390445	A	G	45390445	2	3	80	1	0	0	0	0	0	0	0	1	13799	40	2	4		4	RUNX2	6	45390445	Silent	SNP	A	TCGA-2X-A9D5-01A-11D-A435-10	43779699	45390445	125724622	25	5548											
LRRC1	55227	mdanderson.org	37	chr6	53660068	53660068	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcggcgatgttccactgcaTccccctgtggcggtgcaacc	13	15	0	0	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_018214	exon1	c.T14C	p.I5T	ACTGCATCCCCCT		47	3	0.06	45	0	0				5	0	0				C	53660068	T	C	53660068	3	2	80	1	0	0	0	0	1	0	0	0	9010	1435	50	4	16	4	LRRC1	6	53660068	Missense_Mutation	SNP	T	TCGA-2X-A9D5-01A-11D-A435-10	8269623	53660068	117454999	26	5549											
MRAP2	112609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	84772667	84772667	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcttcgtgatttttatgttTtttgtgctgaccttgctgac	9	7	1	3	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_138409	exon3	c.T183G	p.F61L	TATGTTTTTTGTG		146	22	0.15	121	0	0				17	7	0.41				G	84772667	T	G	84772667	3	3	80	1	0	0	0	0	1	0	0	0	9802	1838	64	4	189	4	MRAP2	6	84772667	Missense_Mutation	SNP	T	TCGA-2X-A9D5-01A-11D-A435-10	31112599	84772667	86342400	27	5550											
HSF2	3298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	122744744	122744744	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agggttgagctgttggattaTcttgacagtattgactgcag	13	5	1	3	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_004506	exon10	c.T1089C	p.Y363Y	GGATTATCTTGAC		60	12	0.2	58	0	0				65	17	0.26				C	122744744	T	C	122744744	2	2	80	1	0	0	0	0	0	0	0	1	7436	1442	50	4		4	HSF2	6	122744744	Silent	SNP	T	TCGA-2X-A9D5-01A-11D-A435-10	37972077	122744744	48370323	28	5551											
TNRC18	84629	mdanderson.org	37	chr7	5391702	5391702	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ccactcgtccttcaggaattCttcgtcttcctctgagtccg	7	15	4	1	rs3801048	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001080495	exon17	c.G5218A	p.E1740K	GGAATTCTTCGTC		127	3	0.02	125	0	0				215	0	0				T	5391702	C	T	5391702	3	4	80	1	0	0	0	0	1	0	0	0	16398	922	32	3	3744	3	TNRC18	7	5391702	Missense_Mutation	SNP	C	TCGA-2X-A9D5-01A-11D-A435-10		5391702	153746961	29	5552											
STK17A	9263	mdanderson.org	37	chr7	43635533	43635533	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gtggtgagaaaatgtataaaGaaagattctgggaaagaatt	12	1	1	4	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_004760	exon2	c.G240T	p.K80N	TATAAAGAAAGAT		52	3	0.06	65	0	0				71	0	0				T	43635533	G	T	43635533	3	4	80	1	0	0	0	0	1	0	0	0	15345	933	33	3	246	3	STK17A	7	43635533	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	38243831	43635533	115503130	30	5553											
LHFPL3	375612	hgsc.bcm.edu	37	chr7	103969251	103969251	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccggagccgccgccgctgcCgccgccgccgccgccgcgat	14	23	0	0	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	LHFPL3,NS,carcinoma,0,1	LHFPL3	NM_199000	exon1	c.C24T	p.A8A	CGCTGCCGCCGCC		49	3	0.06	46	1	0.0217391304		0	1	0	0					T	103969251	C	T	103969251	2	4	80	1	0	0	0	0	0	0	0	1	8805	639	23	1		1	LHFPL3	7	103969251	Silent	SNP	C	TCGA-2X-A9D5-01A-11D-A435-10	60333718	103969251	55169412	31	5554											
ATP6V1H	51606	broad.mit.edu	37	chr8	54742088	54742088	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atcagatttataaatgttttAgcacactaaaaaaaaaaatg	4	4	1	1	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	ATP6V1H	NM_015941	exon4	c.T222C	p.A74A	TGTTTTAGCACAC		38	4	0.11	18	0	0		66		91	0	0				G	54742088	A	G	54742088	2	3	80	1	0	0	0	0	0	0	0	1	1187	407	15	4		4	ATP6V1H	8	54742088	Silent	SNP	A	TCGA-2X-A9D5-01A-11D-A435-10		54742088	91621934	32	5555											
FAM122A	116224	broad.mit.edu	37	chr9	71395159	71395159	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggcggagggcggtggcagcGgcggcggcgggggcctcagg	25	11	1	0	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	FAM122A	NM_138333	exon1	c.G79A	p.G27S	GGCAGCGGCGGCG		81	3	0.04	66	1	0.0151515152		14		42	0	0				A	71395159	G	A	71395159	3	1	80	1	0	0	0	0	1	0	0	0	5450	1116	39	1	81	1	FAM122A	9	71395159	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10		71395159	69818272	33	5556											
ABCA1	19	mdanderson.org	37	chr9	107554227	107554227	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtctttacctcaccaggaGgaatgcccacgcaaatcctg	9	13	2	0	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_005502	exon43	c.C5810A	p.P1937H	CCAGGAGGAATGC		46	3	0.07	66	0	0				30	0	0				T	107554227	G	T	107554227	3	4	80	1	0	0	0	0	1	0	0	0	28	1000	35	3	1007	3	ABCA1	9	107554227	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	36159068	107554227	33659204	34	5557											
AK1	203	mdanderson.org	37	chr9	130635029	130635029	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttgcccctggccgagccTgagctgacctcggaccgcag	12	16	1	2	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_000476	exon4	c.A147G	p.S49S	CGAGCCTGAGCTG		50	3	0.06	83	0	0				34	0	0				C	130635029	T	C	130635029	2	2	80	1	0	0	0	0	0	0	0	1	436	1567	55	4		4	AK1	9	130635029	Silent	SNP	T	TCGA-2X-A9D5-01A-11D-A435-10	23080802	130635029	10578402	35	5558											
FRMD4A	55691	hgsc.bcm.edu;broad.mit.edu	37	chr10	13838519	13838519	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acacaaaagtataaaaccacGggtcctgactttttagggaa	8	8	0	1	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	FRMD4A,NS,malignant_melanoma,-1,1	FRMD4A	NM_018027	exon5	c.C276A	p.P92P	AACCACGGGTCCT		115	5	0.04	120	0	0		-1	1	0	0					T	13838519	G	T	13838519	2	4	80	1	0	0	0	0	0	0	0	1	6085	1103	39	1		1	FRMD4A	10	13838519	Silent	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10		13838519	121696228	36	5559											
RASSF4	83937	mdanderson.org	37	chr10	45479556	45479556	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgagagttccacagacaGctcgggtaagcggagcccgc	15	12	0	2	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_032023	exon5	c.G368T	p.S123I	CAGACAGCTCGGG		42	3	0.07	56	0	0				142	0	0				T	45479556	G	T	45479556	3	4	80	1	0	0	0	0	1	0	0	0	13139	971	34	2	382	2	RASSF4	10	45479556	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	31641037	45479556	90055191	37	5560											
GRK5	2869	mdanderson.org	37	chr10	121086095	121086095	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgaagttccctcacattagCcagtgtgaagacctccgaag	9	12	1	3	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_005308	exon2	c.C120T	p.S40S	CATTAGCCAGTGT		36	3	0.08	60	0	0				46	0	0				T	121086095	C	T	121086095	2	4	80	1	0	0	0	0	0	0	0	1	6832	738	26	2		2	GRK5	10	121086095	Silent	SNP	C	TCGA-2X-A9D5-01A-11D-A435-10	75606539	121086095	14448652	38	5561											
C10orf120	399814	hgsc.bcm.edu	37	chr10	124459132	124459132	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgcaagtcagactcaccGcaacggtgaagcagaactca	10	11	3	3	rs76198528	alternate_allele	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001010912	exon1	c.C175A	p.R59R	CTCACCGCAACGG		77	4	0.05	82	0	0				0	0					T	124459132	G	T	124459132	2	4	80	1	0	0	0	0	0	0	0	1	1594	1101	38	1		1	C10orf120	10	124459132	Silent	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	3373037	124459132	11075615	39	5562											
CCDC73	493860	mdanderson.org	37	chr11	32739669	32739669	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaataattttaccaatctGctcttcataatgaatttctg	3	9	4	1	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001008391	exon3	c.T160A	p.C54S	CAATCTGCTCTTC		22	2	0.09	41	0	0				0	0					T	32739669	G	T	32739669	3	4	80	1	0	0	0	0	1	0	0	0	2866	1328	46	2	3143	2	CCDC73	11	32739669	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10		32739669	102266847	40	5563											
MADD	8567	mdanderson.org	37	chr11	47296560	47296560	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caaggcggggagccgctcccGcaacagtactctcacgtccc	11	17	1	0	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	MADD,colon,carcinoma,+1,1	MADD	NM_001135944	exon3	c.G509T	p.R170L	GCTCCCGCAACAG		43	3	0.07	29	0	0		1	1	24	0	0				T	47296560	G	T	47296560	3	4	80	1	0	0	0	0	1	0	0	0	9197	1087	38	1	515	1	MADD	11	47296560	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	14556891	47296560	87709956	41	5564											
SPTBN2	6712	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	66461270	66461270	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcatgagaagctggacGctgggcaggtccttgccatg	13	10	2	1	rs149464236	alternate_allele	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	SPTBN2	NM_006946	exon22	c.C4566A	p.S1522R	CTGGACGCTGGGC		93	5	0.05	76	0	0		188		54	0	0				T	66461270	G	T	66461270	3	4	80	1	0	0	0	0	1	0	0	0	15175	1078	38	1	2670	1	SPTBN2	11	66461270	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	19164710	66461270	68545246	42	5565											
CHKA	1119	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	67842260	67842260	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgacctctctgcgagaatgGcaaacataacgctctccaga	9	12	2	3	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001277	exon4	c.C554T	p.A185V	AGAATGGCAAACA		67	5	0.07	100	0	0				18	0	0				A	67842260	G	A	67842260	3	1	80	1	0	0	0	0	1	0	0	0	3369	1203	42	2	855	2	CHKA	11	67842260	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	1380990	67842260	67164256	43	5566											
PDE2A	5138	mdanderson.org	37	chr11	72288535	72288535	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcgagttgttacttgggaGgccgcggatggtgaacttgt	16	7	0	1	rs17854062		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_002599	exon31	c.C2719A	p.L907I	TTGGGAGGCCGCG		25	2	0.08	50	0	0				41	0	0				T	72288535	G	T	72288535	3	4	80	1	0	0	0	0	1	0	0	0	11682	1000	35	3	110	3	PDE2A	11	72288535	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	4446275	72288535	62717981	44	5567											
CHORDC1	26973	mdanderson.org	37	chr11	89935586	89935586	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcccactcaatctgttgtgGcatctttttgtttttcctgc	6	12	3	0	rs1045861	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_012124	exon11	c.C986G	p.A329G	GTTGTGGCATCTT		74	2	0.03	116	0	0				122	0	0				C	89935586	G	C	89935586	3	2	80	1	0	0	0	0	1	0	0	0	3387	1203	42	5	16	5	CHORDC1	11	89935586	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	17647051	89935586	45070930	45	5568											
MMP3	4314	mdanderson.org	37	chr11	102711321	102711321	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaacgagaaataaattgGtccctatttaagaaattgag	8	6	0	3	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_002422	exon5	c.C629A	p.T210N	AAATTGGTCCCTA		38	3	0.08	80	0	0				0	0					T	102711321	G	T	102711321	3	4	80	1	0	0	0	0	1	0	0	0	9714	1261	44	3	828	3	MMP3	11	102711321	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	12775735	102711321	32295195	46	5569											
DYNC2H1	79659	mdanderson.org	37	chr11	103027467	103027467	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggagcattgccaaaagaacaGacacgcttcaacagagttga	10	9	1	4	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001080463	exon26	c.G4095T	p.Q1365H	AGAACAGACACGC		32	3	0.09	42	0	0				0	0					T	103027467	G	T	103027467	3	4	80	1	0	0	0	0	1	0	0	0	4872	933	33	3	4197	3	DYNC2H1	11	103027467	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	316146	103027467	31979049	47	5570											
TMEM25	84866	mdanderson.org	37	chr11	118403027	118403027	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gcaggaggccagcacctcaaGactgctgagcgtgggagggg	18	10	1	2	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001144038	exon3	c.G233T	p.R78I	CCTCAAGACTGCT		37	3	0.08	62	0	0				13	1	0.08				T	118403027	G	T	118403027	3	4	80	1	0	0	0	0	1	0	0	0	16209	942	33	3	239	3	TMEM25	11	118403027	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	15375560	118403027	16603489	48	5571											
VPS26B	112936	mdanderson.org	37	chr11	134114860	134114860	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcccgatccggctcttcctGgccgggtatgagctcacgcc	11	16	2	1	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_052875	exon5	c.G750T	p.L250L	CTTCCTGGCCGGG		26	3	0.12	45	0	0				82	0	0				T	134114860	G	T	134114860	2	4	80	1	0	0	0	0	0	0	0	1	17257	1335	47	3		3	VPS26B	11	134114860	Silent	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	15711833	134114860	891656	49	5572											
GPR162	27239	hgsc.bcm.edu	37	chr12	6935869	6935869	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agacaaacatcttctctaccCctcgggaaccaggctccttc	6	16	2	1	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	GPR162,caecum,carcinoma,0,1	GPR162	NM_019858	exon5	c.C1267T	p.P423S	TCTACCCCTCGGG		96	4	0.04	80	0	0		0	1	9	0	0				T	6935869	C	T	6935869	3	4	80	1	0	0	0	0	1	0	0	0	6705	623	22	3	1300	3	GPR162	12	6935869	Missense_Mutation	SNP	C	TCGA-2X-A9D5-01A-11D-A435-10		6935869	126916026	50	5573											
STRAP	11171	mdanderson.org	37	chr12	16036515	16036515	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cagggagatacaggagactgGattggaacatttttgggtca	14	5	1	2	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_007178	exon2	c.G153T	p.W51C	AGACTGGATTGGA		46	3	0.07	43	0	0				419	0	0				T	16036515	G	T	16036515	3	4	80	1	0	0	0	0	1	0	0	0	15381	1183	41	3	159	3	STRAP	12	16036515	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	9100646	16036515	117815380	51	5574											
MSRB3	253827	hgsc.bcm.edu;mdanderson.org	37	chr12	65672601	65672601	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcgctctgcctctccctctGcctctgcctctgcctggccg	8	21	5	0	rs377713148	alternate_allele	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_198080	exon1	c.G53C	p.C18S	CCCTCTGCCTCTG		127	6	0.05	108	0	0				5	0	0				C	65672601	G	C	65672601	3	2	80	1	0	0	0	0	1	0	0	0	9936	1319	46	5	55	5	MSRB3	12	65672601	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	49636086	65672601	68179294	52	5575											
GLTP	51228	mdanderson.org	37	chr12	110318081	110318081	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctccattccggctcaccgaaGaagggcggcaggtgggacac	14	13	1	1	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_016433	exon1	c.C99A	p.F33L	ACCGAAGAAGGGC		35	3	0.09	26	0	0				51	0	0				T	110318081	G	T	110318081	3	4	80	1	0	0	0	0	1	0	0	0	6512	933	33	3	550	3	GLTP	12	110318081	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	44645480	110318081	23533814	53	5576											
RBM19	9904	mdanderson.org	37	chr12	114374911	114374911	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagaagacgccaactggagCccactccagatagaggggga	15	10	0	4	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001146699	exon16	c.G1969A	p.A657T	CTGGAGCCCACTC		115	5	0.04	111	0	0				42	0	0				T	114374911	C	T	114374911	3	4	80	1	0	0	0	0	1	0	0	0	13172	739	26	2	949	2	RBM19	12	114374911	Missense_Mutation	SNP	C	TCGA-2X-A9D5-01A-11D-A435-10	4056830	114374911	19476984	54	5577											
RPLP0	6175	broad.mit.edu	37	chr12	120634654	120634654	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaaccttagctggggctgcAgcagcagcaggagcagctgt	14	11	1	0	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	RPLP0	NM_053275	exon8	c.T876A	p.A292A	GGCTGCAGCAGCA		313	4	0.01	263	0	0		27		11730	7	0				T	120634654	A	T	120634654	2	4	80	1	0	0	0	0	0	0	0	1	13655	175	7	5		5	RPLP0	12	120634654	Silent	SNP	A	TCGA-2X-A9D5-01A-11D-A435-10	6259743	120634654	13217241	55	5578											
PCDH8	5100	mdanderson.org	37	chr13	53420269	53420269	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcaggtggtggcgatggcgAtgatggcggccagcagcagc	19	9	0	1	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_002590	exon1	c.T2303C	p.I768T	ATGGCGATGATGG		16	3	0.19	27	0	0				0	0					G	53420269	A	G	53420269	3	3	80	1	0	0	0	0	1	0	0	0	11563	333	12	4	921	4	PCDH8	13	53420269	Missense_Mutation	SNP	A	TCGA-2X-A9D5-01A-11D-A435-10		53420269	61749609	56	5579											
FANCM	57697	mdanderson.org	37	chr14	45606273	45606273	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtcacttttattttcaggGtctacacaagcttccaccag	6	11	3	0	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_020937	exon2	c.G510T	p.G170G	TTCAGGGTCTACA		38	3	0.08	48	2	0.0416666667				13	0	0				T	45606273	G	T	45606273	2	4	80	1	0	0	0	0	0	0	0	1	5703	1275	44	3		3	FANCM	14	45606273	Silent	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10		45606273	61743267	57	5580											
PLEKHH1	57475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	68044798	68044798	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcggtggactaccatgtgtCcctggcccagaccgcactgc	11	16	0	1	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_020715	exon19	c.C2633T	p.S878F	ATGTGTCCCTGGC		150	32	0.21	116	0	0				83	21	0.25				T	68044798	C	T	68044798	3	4	80	1	0	0	0	0	1	0	0	0	12123	855	30	3	2703	3	PLEKHH1	14	68044798	Missense_Mutation	SNP	C	TCGA-2X-A9D5-01A-11D-A435-10	22438525	68044798	39304742	58	5581											
CCDC64B	146439	mdanderson.org	37	chr16	3080718	3080718	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccccctgcagactctccagCcgcgtcctcagctctgctcc	7	21	3	1	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001103175	exon3	c.G594A	p.R198R	CTCCAGCCGCGTC		46	3	0.07	56	0	0				1	0	0				T	3080718	C	T	3080718	2	4	80	1	0	0	0	0	0	0	0	1	2856	726	26	2		2	CCDC64B	16	3080718	Silent	SNP	C	TCGA-2X-A9D5-01A-11D-A435-10		3080718	87274035	59	5582											
KIAA0430	9665	broad.mit.edu;mdanderson.org	37	chr16	15719657	15719657	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atagagcagagtgtggcactGctaatacagaggaaagaagt	13	5	0	4	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	KIAA0430	NM_014647	exon8	c.C1525T	p.Q509X	GGCACTGCTAATA		37	13	0.35	36	0	0		154		20	3	0.15				A	15719657	G	A	15719657	5	1	80	1	0	0	0	0	0	0	1	0	8218	1333	46	2	3786	2	KIAA0430	16	15719657	Splice_Site	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	12638939	15719657	74635096	60	5583											
PDP2	57546	mdanderson.org	37	chr16	66918754	66918754	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgctgcccatcctgcattgGctcaagcacccaggggacag	11	14	1	0	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_020786	exon2	c.G567A	p.W189X	GCATTGGCTCAAG		46	3	0.07	82	0	0				7	0	0				A	66918754	G	A	66918754	4	1	80	1	0	0	0	0	0	1	0	0	11732	1212	42	2	569	2	PDP2	16	66918754	Nonsense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	51199097	66918754	23435999	61	5584											
SCRN2	90507	mdanderson.org	37	chr17	45915296	45915296	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggcccactcgccggccaGcagcccctgtgtggcctcga	14	17	0	0	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_138355	exon8	c.C1192T	p.L398L	CGGCCAGCAGCCC		31	3	0.1	36	0	0				36	0	0				A	45915296	G	A	45915296	2	1	80	1	0	0	0	0	0	0	0	1	13992	962	34	2		2	SCRN2	17	45915296	Silent	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10		45915296	35279914	62	5585											
HGS	9146	mdanderson.org	37	chr17	79663412	79663412	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgaggggctgcaggacaaGctggcacagatccgcgatgc	15	10	0	2	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_004712	exon16	c.G1419T	p.K473N	GGACAAGCTGGCA		46	3	0.07	50	0	0				128	0	0				T	79663412	G	T	79663412	3	4	80	1	0	0	0	0	1	0	0	0	7127	962	34	2	1481	2	HGS	17	79663412	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	33748116	79663412	1531798	63	5586											
SSBP4	170463	mdanderson.org	37	chr19	18541711	18541711	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccaggtgacacaatggccGcaggctccatggcggctggc	14	15	0	1	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	SSBP4,NS,carcinoma,0,1	SSBP4	NM_001009998	exon5	c.G340A	p.A114T	ATGGCCGCAGGCT		26	2	0.08	39	0	0		0	1	200	0	0				A	18541711	G	A	18541711	3	1	80	1	0	0	0	0	1	0	0	0	15237	1087	38	1	358	1	SSBP4	19	18541711	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10		18541711	40587272	64	5587											
LRFN1	57622	mdanderson.org	37	chr19	39805736	39805736	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttggcgaagtctcggcggcGcacggcggcgatgaagttgt	18	9	1	1	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_020862	exon1	c.C241A	p.R81S	GGCGGCGCACGGC		14	2	0.14	19	0	0				18	0	0				T	39805736	G	T	39805736	3	4	80	1	0	0	0	0	1	0	0	0	8981	1087	38	1	2082	1	LRFN1	19	39805736	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	21264025	39805736	19323247	65	5588											
ERCC1	2067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	45920093	45920093	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tctcacctccaggcgaggatCaatgtgcagtcggccaggat	12	12	2	0	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001983	exon6	c.G588T	p.L196F	GAGGATCAATGTG		71	7	0.1	71	0	0				190	48	0.25				A	45920093	C	A	45920093	3	1	80	1	0	0	0	0	1	0	0	0	5240	825	29	3	454	3	ERCC1	19	45920093	Missense_Mutation	SNP	C	TCGA-2X-A9D5-01A-11D-A435-10	6114357	45920093	13208890	66	5589											
LAIR1	3903	broad.mit.edu	37	chr19	54871676	54871676	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gggagtccgggcctccagagGtttctgtaaacaggggcagg	17	9	1	1	rs190462445	bycluster;by1000genomes	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	LAIR1	NM_002287	exon4	c.C368G	p.T123S	CCAGAGGTTTCTG		97	4	0.04	105	2	0.019047619		44		59	5	0.08				C	54871676	G	C	54871676	3	2	80	1	0	0	0	0	1	0	0	0	8640	1261	44	5	523	5	LAIR1	19	54871676	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	8951583	54871676	4257307	67	5590											
EEF1A2	1917	bcgsc.ca	37	chr20	62119705	62119705	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtgaccttgccggcgccGccgctcttcttctccacgtt	10	16	3	1	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	EEF1A2,colon,carcinoma,-1,1	EEF1A2	NM_001958	exon8	c.C1338A	p.G446G	GGCGCCGCCGCTC		39	4	0.1	56	0	0		60	1	16	0	0				T	62119705	G	T	62119705	2	4	80	1	0	0	0	0	0	0	0	1	4950	1074	38	1		1	EEF1A2	20	62119705	Silent	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10		62119705	905815	68	5591											
STMN3	50861	mdanderson.org	37	chr20	62275211	62275211	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atagggctctctggggacagGtcagaaggggacttgaggat	17	6	2	2	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	STMN3,NS,carcinoma,-2,1	STMN3	NM_015894	exon3	c.C189A	p.D63E	GGACAGGTCAGAA		35	3	0.09	43	0	0		-2	1	310	0	0				T	62275211	G	T	62275211	3	4	80	1	0	0	0	0	1	0	0	0	15365	1252	44	3	365	3	STMN3	20	62275211	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10	155506	62275211	750309	69	5592											
NIPSNAP1	8508	mdanderson.org	37	chr22	29957542	29957542	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgttgggacccattctggGctgtggctcattccagaagc	13	10	2	1	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_003634	exon6	c.C532A	p.P178T	TTCTGGGCTGTGG		51	3	0.06	74	0	0				206	0	0				T	29957542	G	T	29957542	3	4	80	1	0	0	0	0	1	0	0	0	10475	1203	42	2	342	2	NIPSNAP1	22	29957542	Missense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10		29957542	21347024	70	5593											
FAM104B	90736	mdanderson.org	37	chrX	55172630	55172630	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atacccctcatgcaagaactGgggaaagtttgcatcgggtt	11	9	1	1	rs113263757	bycluster	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001166700	exon3	c.C238T	p.Q80X	AGAACTGGGGAAA		38	5	0.13	27	1	0.037037037				109	0	0				A	55172630	G	A	55172630	4	1	80	1	0	0	0	0	0	1	0	0	5417	1357	47	3	217	3	FAM104B	23	55172630	Nonsense_Mutation	SNP	G	TCGA-2X-A9D5-01A-11D-A435-10		55172630	100097930	71	5594			1	13		2	2	16	N	G_C	3.488679e-05
FAM104B	90736	mdanderson.org	37	chrX	55172645	55172645	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gaactggggaaagtttgcatCgggttcagtaacaatctggt	13	6	2	0	rs1047042	bycluster;byfrequency;alternate_allele	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001166700	exon3	c.G223C	p.D75H	TTGCATCGGGTTC		38	3	0.08	29	1	0.0344827586				114	0	0				G	55172645	C	G	55172645	3	3	80	1	0	0	0	0	1	0	0	0	5417	884	31	5	232	5	FAM104B	23	55172645	Missense_Mutation	SNP	C	TCGA-2X-A9D5-01A-11D-A435-10	15	55172645	100097915	72	5595			1	13		2	2	16	N	G_C	3.488679e-05
CSMD2	114784	broad.mit.edu	37	chr1	34554769	34554769	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaactgtcccattgggaccGtgcagttggaacgtgcagtt	12	10	1	0	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	CSMD2	NM_052896	exon2	c.C93T	p.H31H	GGGACCGTGCAGT		141	4	0.03	151	1	0.0066225166		946		11	0	0				A	34554769	G	A	34554769	2	1	81	1	0	0	0	0	0	0	0	1	3970	1136	40	1		1	CSMD2	1	34554769	Silent	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10		34554769	214695852	1	5596											
SLC2A1	6513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	43395380	43395380	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaccttcttctcccgcatcaTctgccgactctcttccttca	4	18	6	0	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_006516	exon6	c.A751G	p.M251V	GCATCATCTGCCG		40	9	0.23	57	0	0				97	26	0.27				C	43395380	T	C	43395380	3	2	81	1	0	0	0	0	1	0	0	0	14592	1435	50	4	747	4	SLC2A1	1	43395380	Missense_Mutation	SNP	T	TCGA-2X-A9D6-01A-11D-A435-10	8840611	43395380	205855241	2	5597											
DPH2	1802	mdanderson.org	37	chr1	44437573	44437573	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgccaacttccctgaggtGgatgtctttgtgctattagc	10	10	1	1	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_001384	exon4	c.G999T	p.V333V	TGAGGTGGATGTC		45	3	0.07	80	0	0				135	0	0				T	44437573	G	T	44437573	2	4	81	1	0	0	0	0	0	0	0	1	4747	1335	47	3		3	DPH2	1	44437573	Silent	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10	1042193	44437573	204813048	3	5598											
GLIS1	148979	mdanderson.org	37	chr1	53972366	53972366	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	attggggaagaagccacagtCctcggggccgctggacacca	14	12	0	1	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_147193	exon10	c.G1789T	p.D597Y	CACAGTCCTCGGG		40	3	0.08	56	0	0				1	0	0				A	53972366	C	A	53972366	3	1	81	1	0	0	0	0	1	0	0	0	6486	855	30	3	77	3	GLIS1	1	53972366	Missense_Mutation	SNP	C	TCGA-2X-A9D6-01A-11D-A435-10	9534793	53972366	195278255	4	5599											
CLCC1	23155	broad.mit.edu	37	chr1	109492518	109492518	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acaagtcaggactgacatccTtttcccctgaaataccatat	5	12	1	2	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	CLCC1	NM_001048210	exon3	c.A155G	p.K52R	ACATCCTTTTCCC		501	4	0.01	600	0	0		55		48	0	0				C	109492518	T	C	109492518	3	2	81	1	0	0	0	0	1	0	0	0	3483	1609	56	4	1536	4	CLCC1	1	109492518	Missense_Mutation	SNP	T	TCGA-2X-A9D6-01A-11D-A435-10	55520152	109492518	139758103	5	5600											
METTL13	51603	broad.mit.edu	37	chr1	171759727	171759727	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccatgatcgctggccttgCcctgctgagaaacccagagc	11	14	0	3	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	METTL13	NM_015935	exon5	c.C1445T	p.A482V	GCCTTGCCCTGCT		254	4	0.02	289	0	0		67		65	0	0				T	171759727	C	T	171759727	3	4	81	1	0	0	0	0	1	0	0	0	9546	739	26	2	1463	2	METTL13	1	171759727	Missense_Mutation	SNP	C	TCGA-2X-A9D6-01A-11D-A435-10	62267209	171759727	77490894	6	5601											
IRF2BP2	359948	mdanderson.org	37	chr1	234745106	234745106	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgaactcgacgcggtcggcGccctcgtagttgacgcagcc	13	15	0	1	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_182972	exon1	c.C135A	p.G45G	GTCGGCGCCCTCG		43	3	0.07	51	0	0				17	0	0				T	234745106	G	T	234745106	2	4	81	1	0	0	0	0	0	0	0	1	7873	1074	38	1		1	IRF2BP2	1	234745106	Silent	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10	62985379	234745106	14505515	7	5602											
NLRP3	114548	mdanderson.org	37	chr1	247599286	247599286	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaggttggtcagctgctGcctcacatcagcatgttgtc	12	10	3	0	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_004895	exon6	c.G2513T	p.C838F	GCTGCTGCCTCAC		46	3	0.07	63	1	0.0158730159				7	0	0				T	247599286	G	T	247599286	3	4	81	1	0	0	0	0	1	0	0	0	10524	1319	46	2	2535	2	NLRP3	1	247599286	Missense_Mutation	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10	12854180	247599286	1651335	8	5603											
SNTG2	54221	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	1133331	1133331	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accagacagggatgttgttcGtaggagatgctgttctccag	13	8	1	2	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	SNTG2	NM_018968	exon5	c.G349T	p.V117L	TTGTTCGTAGGAG		102	5	0.05	128	0	0		125		0	0					T	1133331	G	T	1133331	3	4	81	1	0	0	0	0	1	0	0	0	14928	1145	40	1	367	1	SNTG2	2	1133331	Missense_Mutation	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10		1133331	242066042	9	5604											
SUCLG2	8801	mdanderson.org	37	chr3	67426205	67426205	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggccacagccttcttggctGcatcctccaggtcaatggct	10	14	2	0	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_003848	exon11	c.C1262T	p.A421V	TTGGCTGCATCCT		76	4	0.05	84	0	0				104	0	0				A	67426205	G	A	67426205	3	1	81	1	0	0	0	0	1	0	0	0	15420	1319	46	2	184	2	SUCLG2	3	67426205	Missense_Mutation	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10		67426205	130596225	10	5605											
PLXND1	23129	mdanderson.org	37	chr3	129277296	129277296	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccagctgcaggtcagagatgGagcaggcgtcgatgaaggcc	16	10	1	2	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_015103	exon33	c.C5420A	p.S1807Y	GAGATGGAGCAGG		37	3	0.08	67	0	0				315	0	0				T	129277296	G	T	129277296	3	4	81	1	0	0	0	0	1	0	0	0	12174	1174	41	3	373	3	PLXND1	3	129277296	Missense_Mutation	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10	61851091	129277296	68745134	11	5606											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	55599320	55599320	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgattttggtctagccagaGacatcaagaatgattctaat	9	6	3	4	rs121913506	bycluster	TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	KIT,colon,carcinoma,0,932	KIT	NM_000222	exon17	c.G2446T	p.D816Y	GCCAGAGACATCA		45	11	0.24	82	0	0		0	932	369	114	0.31				T	55599320	G	T	55599320	3	4	81	1	0	0	0	0	1	0	0	0	8371	942	33	3	2512	3	KIT	4	55599320	Missense_Mutation	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10		55599320	135554956	12	5607											
NUP155	9631	mdanderson.org	37	chr5	37309257	37309257	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tatactgagcacaaacattgGaaaggtccacttgattgcta	8	8	0	2	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_153485	exon24	c.C2741A	p.S914Y	ACATTGGAAAGGT		122	5	0.04	157	0	0				53	0	0				T	37309257	G	T	37309257	3	4	81	1	0	0	0	0	1	0	0	0	10803	1174	41	3	1482	3	NUP155	5	37309257	Missense_Mutation	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10		37309257	143606003	13	5608											
RIOK2	55781	broad.mit.edu	37	chr5	96504548	96504548	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taatgcatttaacatctctgTcaaaatacctgcaaaagcaa	4	9	2	0	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	RIOK2	NM_001159749	exon7	c.A788G	p.D263G	TCTCTGTCAAAAT		134	4	0.03	173	0	0		82		50	0	0				C	96504548	T	C	96504548	3	2	81	1	0	0	0	0	1	0	0	0	13429	1667	58	4	914	4	RIOK2	5	96504548	Missense_Mutation	SNP	T	TCGA-2X-A9D6-01A-11D-A435-10	59195291	96504548	84410712	14	5609											
WRNIP1	56897	broad.mit.edu	37	chr6	2766364	2766375	+	In_Frame_Del	DEL	GGCGACGGCGAT	GGCGACGGCGAT	-													aggaggaggaggaggccgtgGgcgacggcgatggcgacggg					novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	GGCGACGGCGAT	GGCGACGGCGAT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	WRNIP1	NM_130395	exon1	c.508_519del	p.170_173del	GCCGTGGGCGACG		6	3	0.5	10	0	0		39		4	0	0				-	2766375	GGCGACGGCGAT	-	2766364	7	5	81	1	0	1	0	1	0	0	0	0	17462	1232	43	0	510	0	WRNIP1	6	2766364	In_Frame_Del	DEL	GGCGACGGCGAT	TCGA-2X-A9D6-01A-11D-A435-10		2766364	168348703	15	5610											
UBD	10537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	29523770	29523770	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attgcaagtcacaatctgggTctcagggattatacccgtct	9	10	4	0	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_006398	exon2	c.A385G	p.T129A	TCTGGGTCTCAGG		301	44	0.15	257	0	0				918	4	0				C	29523770	T	C	29523770	3	2	81	1	0	0	0	0	1	0	0	0	16903	1667	58	4	116	4	UBD	6	29523770	Missense_Mutation	SNP	T	TCGA-2X-A9D6-01A-11D-A435-10	26757406	29523770	141591297	16	5611											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	152702176	152702176	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gcattccactatctcctcatCcgtgttcttgccttccagga	6	15	3	0	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_033071	exon56	c.G8995A	p.D2999N	CCTCATCCGTGTT		150	17	0.11	121	0	0				3	0	0				T	152702176	C	T	152702176	3	4	81	1	0	0	0	0	1	0	0	0	15501	855	30	3	17856	3	SYNE1	6	152702176	Missense_Mutation	SNP	C	TCGA-2X-A9D6-01A-11D-A435-10	123178406	152702176	18412891	17	5612											
ZAN	7455	broad.mit.edu	37	chr7	100365263	100365263	+	RNA	DEL	A	A	-													catgcaccacctgcacggctAattttttttttcactttttg					novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	ZAN	.	.	.	.	ACGGCTAATTTTT		8	7	0.88	7	0	0		658		0	0					-	100365263	A	-	100365263	6	5	81	0	1	1	0	1	0	0	0	0	17572	377	13	0		0	ZAN	7	100365263	RNA	DEL	A	TCGA-2X-A9D6-01A-11D-A435-10		100365263	58773400	18	5613											
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	113518539	113518539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatacagttttgtctgttgGtaacattcccaactgtaaat	6	7	1	0	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_002711	exon4	c.C2608T	p.P870S	CTGTTGGTAACAT		110	10	0.09	86	0	0				1	0	0				A	113518539	G	A	113518539	3	1	81	1	0	0	0	0	1	0	0	0	12419	1261	44	3	764	3	PPP1R3A	7	113518539	Missense_Mutation	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10	13153276	113518539	45620124	19	5614											
DLC1	10395	broad.mit.edu	37	chr8	12957624	12957624	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgactggctgctgctgctgCtggtctgcgtggagttggaa	16	10	1	0	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	DLC1,bladder,carcinoma,0,3	DLC1	NM_182643	exon9	c.G2222C	p.S741T	CTGCTGCTGGTCT		59	3	0.05	66	0	0		411	3	29	0	0				G	12957624	C	G	12957624	3	3	81	1	0	0	0	0	1	0	0	0	4578	797	28	5	2404	5	DLC1	8	12957624	Missense_Mutation	SNP	C	TCGA-2X-A9D6-01A-11D-A435-10		12957624	133406398	20	5615											
PLEC	5339	mdanderson.org	37	chr8	144992458	144992458	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggacgggtccacgtagctgCgcacctcgctgggctctgac	14	14	1	1	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_201380	exon32	c.G11942A	p.R3981H	TAGCTGCGCACCT		10	2	0.2	8	0	0				381	84	0.22				T	144992458	C	T	144992458	3	4	81	1	0	0	0	0	1	0	0	0	12099	768	27	1	2116	1	PLEC	8	144992458	Missense_Mutation	SNP	C	TCGA-2X-A9D6-01A-11D-A435-10	132034834	144992458	1371564	21	5616											
OPLAH	26873	mdanderson.org	37	chr8	145108284	145108284	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgcctggcgcccgcaggGcctccgtcaccgctggatgg	14	17	1	0	rs186909122	by1000genomes;alternate_allele	TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_017570	exon20	c.C2699A	p.A900D	CGCAGGGCCTCCG		30	4	0.13	64	1	0.015625				1	0	0				T	145108284	G	T	145108284	3	4	81	1	0	0	0	0	1	0	0	0	10923	1203	42	2	1201	2	OPLAH	8	145108284	Missense_Mutation	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10	115826	145108284	1255738	22	5617											
NDUFB6	4712	mdanderson.org	37	chr9	32558939	32558939	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggacttcttttcaactatgCcatatggtttttcctgtaat	6	8	2	0	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_002493	exon3	c.G287A	p.G96D	ACTATGCCATATG		45	3	0.07	61	0	0				149	0	0				T	32558939	C	T	32558939	3	4	81	1	0	0	0	0	1	0	0	0	10331	739	26	2	107	2	NDUFB6	9	32558939	Missense_Mutation	SNP	C	TCGA-2X-A9D6-01A-11D-A435-10		32558939	108654492	23	5618											
PHF19	26147	mdanderson.org	37	chr9	123631480	123631480	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccgggcccgccgcagtaGcagtagcattgctgctggtt	13	13	1	0	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_015651	exon6	c.C594T	p.C198C	GCAGTAGCAGTAG		47	3	0.06	80	0	0				21	0	0				A	123631480	G	A	123631480	2	1	81	1	0	0	0	0	0	0	0	1	11876	963	34	2		2	PHF19	9	123631480	Silent	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10	91072541	123631480	17581951	24	5619											
SLC2A6	11182	mdanderson.org	37	chr9	136342253	136342253	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacccgccatgagcgcataGccggccgccgacggcacagc	13	18	0	1	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_017585	exon3	c.C366A	p.G122G	CGCATAGCCGGCC		53	3	0.06	63	0	0				21	0	0				T	136342253	G	T	136342253	2	4	81	1	0	0	0	0	0	0	0	1	14603	958	34	2		2	SLC2A6	9	136342253	Silent	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10	12710773	136342253	4871178	25	5620											
RRP12	23223	mdanderson.org	37	chr10	99133626	99133626	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tagatcttagattccactgtGctgcctgcctgagccaggtc	10	12	1	3	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_015179	exon16	c.C1824T	p.S608S	CACTGTGCTGCCT		38	3	0.08	51	0	0				232	0	0				A	99133626	G	A	99133626	2	1	81	1	0	0	0	0	0	0	0	1	13737	1310	46	2		2	RRP12	10	99133626	Silent	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10		99133626	36401121	26	5621											
OR51M1	390059	mdanderson.org	37	chr11	5411095	5411095	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggccagcaagtggtcagagCaggcctaattgtcatcttcc	11	11	3	1	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_001004756	exon1	c.C467T	p.A156V	TCAGAGCAGGCCT		36	3	0.08	55	0	0				0	0					T	5411095	C	T	5411095	3	4	81	1	0	0	0	0	1	0	0	0	11150	710	25	2	469	2	OR51M1	11	5411095	Missense_Mutation	SNP	C	TCGA-2X-A9D6-01A-11D-A435-10		5411095	129595421	27	5622											
OR52D1	390066	hgsc.bcm.edu;broad.mit.edu	37	chr11	5510157	5510158	+	In_Frame_Ins	INS	-	-	GGC													cttctctcactcacagacctINSggctctcagttctaccactg					novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	OR52D1	NM_001005163	exon1	c.221_222insGGC	p.L74delinsLA	CAGACCTGGCTCT		155	14	0.09	198	0	0		66		0	0					GGC	5510158	-	GGC	5510157	7	5	81	1	0	1	1	0	0	0	0	0	11161	1580	55	0	223	0	OR52D1	11	5510157	In_Frame_Ins	INS	-	TCGA-2X-A9D6-01A-11D-A435-10	99062	5510157	129496359	28	5623											
USH1C	10083	mdanderson.org	37	chr11	17531263	17531263	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggagtcttggggggatagtaGaacatgtccaaagggatgtc	16	5	1	1	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_153676	exon18	c.C1653A	p.F551L	ATAGTAGAACATG		10	2	0.2	8	0	0				7	0	0				T	17531263	G	T	17531263	3	4	81	1	0	0	0	0	1	0	0	0	17093	933	33	3	1086	3	USH1C	11	17531263	Missense_Mutation	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10	12021106	17531263	117475253	29	5624											
BDNF	627	mdanderson.org	37	chr11	27681195	27681195	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgtgtgtgtgtgtgtgtgTgcgcgcgcgcgtgtgcgcgc	19	9	1	0	rs28405820		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	.	.	.	.	TGTGTGTGCGCGC		109	8	0.07	139	1	0.0071942446				0	0					C	27681195	T	C	27681195	1	2	81	0	1	0	0	0	0	0	0	0	1392	1710	59	4		4	BDNF	11	27681195	RNA	SNP	T	TCGA-2X-A9D6-01A-11D-A435-10	10149932	27681195	107325321	30	5625											
TUT1	0	broad.mit.edu	37	chr11	62346492	62346492	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgatggagattctggagccTttgggactggctgtggacag	17	7	1	1	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	TUT1	NM_022830	exon5	c.A815G	p.K272R	GGAGCCTTTGGGA		84	3	0.04	94	0	0		122		100	0	0				C	62346492	T	C	62346492	3	2	81	1	0	0	0	0	1	0	0	0	16841	1609	56	4	1943	4	TUT1	11	62346492	Missense_Mutation	SNP	T	TCGA-2X-A9D6-01A-11D-A435-10	34665297	62346492	72660024	31	5626											
MTA2	9219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	62367713	62367713	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	aagacagacaacctttgcctCcacatttccatttgcagtct	5	13	1	2	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_004739	exon3	c.G115C	p.E39Q	TTGCCTCCACATT		109	33	0.3	108	0	0				109	34	0.31				G	62367713	C	G	62367713	3	3	81	1	0	0	0	0	1	0	0	0	9956	864	30	5	1955	5	MTA2	11	62367713	Missense_Mutation	SNP	C	TCGA-2X-A9D6-01A-11D-A435-10	21221	62367713	72638803	32	5627											
SLC25A45	283130	mdanderson.org	37	chr11	65144435	65144435	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcccggaagatggaggctGcacagtgcacgggcccctgg	15	14	0	1	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_182556	exon6	c.C452T	p.A151V	GAGGCTGCACAGT		44	3	0.07	55	0	0				10	0	0				A	65144435	G	A	65144435	3	1	81	1	0	0	0	0	1	0	0	0	14564	1319	46	2	422	2	SLC25A45	11	65144435	Missense_Mutation	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10	2776722	65144435	69862081	33	5628											
ZDHHC24	254359	mdanderson.org	37	chr11	66313361	66313361	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcggcccgggaccgagCaccagcacgtaagccagctc	15	16	0	0	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_207340	exon1	c.G114A	p.V38V	ACCGAGCACCAGC		10	2	0.2	14	0	0				4	0	0				T	66313361	C	T	66313361	2	4	81	1	0	0	0	0	0	0	0	1	17672	697	25	2		2	ZDHHC24	11	66313361	Silent	SNP	C	TCGA-2X-A9D6-01A-11D-A435-10	1168926	66313361	68693155	34	5629											
KNTC1	9735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	123107038	123107038	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgattttgaataatatcatCaataagaaggagtttgggat	9	3	2	3	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	KNTC1,NS,carcinoma,0,1	KNTC1	NM_014708	exon62	c.C6399G	p.I2133M	TATCATCAATAAG		146	14	0.1	138	0	0		0	1	194	48	0.25				G	123107038	C	G	123107038	3	3	81	1	0	0	0	0	1	0	0	0	8470	816	29	5	6641	5	KNTC1	12	123107038	Missense_Mutation	SNP	C	TCGA-2X-A9D6-01A-11D-A435-10		123107038	10744857	35	5630											
DACH1	1602	mdanderson.org	37	chr13	72440446	72440446	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgctgctgctactactGctgctgctgctgctgctgct	11	14	0	0	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_080759	exon1	c.C462T	p.S154S	ACTACTGCTGCTG		30	4	0.13	40	1	0.025				2	0	0				A	72440446	G	A	72440446	2	1	81	1	0	0	0	0	0	0	0	1	4244	1310	46	2		2	DACH1	13	72440446	Silent	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10		72440446	42729432	36	5631											
IRS2	8660	mdanderson.org	37	chr13	110436412	110436412	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctgccgctcccactgccCgcgagggccgcgccgggcgt	15	19	0	0	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_003749	exon1	c.G1989T	p.A663A	ACTGCCCGCGAGG		10	2	0.2	17	0	0				3	0	0				A	110436412	C	A	110436412	2	1	81	1	0	0	0	0	0	0	0	1	7884	639	23	1		1	IRS2	13	110436412	Silent	SNP	C	TCGA-2X-A9D6-01A-11D-A435-10	37995966	110436412	4733466	37	5632											
SOLH	6650	mdanderson.org	37	chr16	602370	602370	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccgggccacgttcggcagCggcggccacctcagcctggg	15	16	1	0	rs75045595	bycluster;by1000genomes	TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_005632	exon11	c.C2577T	p.S859S	CGGCAGCGGCGGC		22	3	0.14	26	0	0	0			39	0	0				T	602370	C	T	602370	2	4	81	1	0	0	0	0	0	0	0	1	14978	767	27	1		1	SOLH	16	602370	Silent	SNP	C	TCGA-2X-A9D6-01A-11D-A435-10		602370	89752383	38	5633											
RSL1D1	26156	broad.mit.edu	37	chr16	11931765	11931765	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttttttggagtctgtctcGcatcttttttccccagcgaa	8	11	3	0	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	RSL1D1	NM_015659	exon9	c.C1352T	p.A451V	TGTCTCGCATCTT		165	4	0.02	161	0	0		40		793	2	0				A	11931765	G	A	11931765	3	1	81	1	0	0	0	0	1	0	0	0	13751	1087	38	1	124	1	RSL1D1	16	11931765	Missense_Mutation	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10	11329395	11931765	78422988	39	5634											
NOD2	64127	mdanderson.org	37	chr16	50733757	50733757	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggccagccattgtcaggagGctccacagccatgtggagaa	13	12	1	1	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_022162	exon2	c.G432T	p.R144S	CAGGAGGCTCCAC		32	3	0.09	44	0	0				6	0	0				T	50733757	G	T	50733757	3	4	81	1	0	0	0	0	1	0	0	0	10563	1194	42	2	438	2	NOD2	16	50733757	Missense_Mutation	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10	38801992	50733757	39620996	40	5635											
SMPD3	55512	mdanderson.org	37	chr16	68395599	68395599	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctccttccgccccttctgGcccgagctcttgctggtggg	12	16	2	0	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_018667	exon8	c.C1773A	p.G591G	CTTCTGGCCCGAG		39	3	0.08	55	0	0				15	0	0				T	68395599	G	T	68395599	2	4	81	1	0	0	0	0	0	0	0	1	14859	1190	42	2		2	SMPD3	16	68395599	Silent	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10	17661842	68395599	21959154	41	5636											
ATP2C2	9914	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	84456001	84456001	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccttgctctcctaggtcacGgacctcttggtggatgaatc	10	13	3	1	rs200504983	bycluster;by1000genomes	TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	ATP2C2	NM_014861	exon8	c.G630A	p.T210T	GGTCACGGACCTC		101	18	0.18	129	1	0.007751938		75		0	0					A	84456001	G	A	84456001	2	1	81	1	0	0	0	0	0	0	0	1	1143	1103	39	1		1	ATP2C2	16	84456001	Silent	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10	16060402	84456001	5898752	42	5637											
FAM83G	644815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	18882003	18882003	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaccacagagggcagcacaaTaggctccggctccggttcct	12	14	0	1	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_001039999	exon5	c.A976G	p.I326V	GCACAATAGGCTC		58	8	0.14	118	0	0				12	1	0.08				C	18882003	T	C	18882003	3	2	81	1	0	0	0	0	1	0	0	0	5670	1406	49	4	1503	4	FAM83G	17	18882003	Missense_Mutation	SNP	T	TCGA-2X-A9D6-01A-11D-A435-10		18882003	62313207	43	5638											
ALDH3A1	218	mdanderson.org	37	chr17	19642929	19642929	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	acgatgggcagcacaggcccGaagatctcctcttgcatcac	10	14	3	1	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_001135168	exon7	c.C1008A	p.F336L	AGGCCCGAAGATC		39	3	0.08	48	0	0				0	0					T	19642929	G	T	19642929	3	4	81	1	0	0	0	0	1	0	0	0	494	1049	37	1	369	1	ALDH3A1	17	19642929	Missense_Mutation	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10	760926	19642929	61552281	44	5639											
NF1	4763	hgsc.bcm.edu;broad.mit.edu	37	chr17	29486050	29486051	+	Frame_Shift_Del	DEL	AA	AA	-													aatatttggagaagctgctgAaaaaaatttatatctctctc					novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	AA	AA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.,1	NF1	NM_001042492	exon3	c.226_227del	p.76_76del	CTGCTGAAAAAAA		60	10	0.17	47	0	0		1586		8	0	0				-	29486051	AA	-	29486050	7	5	81	1	0	1	0	1	0	0	0	0	10402	246	9	0	237	0	NF1	17	29486050	Frame_Shift_Del	DEL	AA	TCGA-2X-A9D6-01A-11D-A435-10	9843121	29486050	51709160	45	5640											
XYLT2	64132	mdanderson.org	37	chr17	48431836	48431836	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatggatggccccccggtGcgaatcgcctacatgctggt	12	15	0	0	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_022167	exon3	c.G696T	p.V232V	CCCGGTGCGAATC		23	3	0.13	42	0	0				49	0	0				T	48431836	G	T	48431836	2	4	81	1	0	0	0	0	0	0	0	1	17523	1306	46	2		2	XYLT2	17	48431836	Silent	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10	18945786	48431836	32763374	46	5641											
BAHCC1	57597	mdanderson.org	37	chr17	79408982	79408982	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagccgggatcgagaccggGgtgaggcaggctccctgcag	18	12	0	2	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	.	.	.	.	GACCGGGGTGAGG		74	5	0.07	142	0	0				17	0	0				T	79408982	G	T	79408982	3	4	81	1	0	0	0	0	1	0	0	0	1294	1232	43	3	456	3	BAHCC1	17	79408982	Missense_Mutation	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10	30977146	79408982	1786228	47	5642											
LPHN1	22859	mdanderson.org	37	chr19	14268080	14268080	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cacctcatactgagtcttgtCgatcccgaccaggaagagca	9	13	2	2	rs370012631		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	LPHN1,NS,carcinoma,0,1	LPHN1	NM_001008701	exon15	c.G2743A	p.D915N	TCTTGTCGATCCC		40	3	0.08	35	0	0		0	1	161	1	0.01				T	14268080	C	T	14268080	3	4	81	1	0	0	0	0	1	0	0	0	8959	884	31	1	1721	1	LPHN1	19	14268080	Missense_Mutation	SNP	C	TCGA-2X-A9D6-01A-11D-A435-10		14268080	44860903	48	5643											
SIPA1L3	23094	hgsc.bcm.edu	37	chr19	38673203	38673203	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccgctcaggtttacaaaaCtgccagtgcagagactcctc	8	15	1	1	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_015073	exon16	c.C4253A	p.T1418N	ACAAAACTGCCAG		123	5	0.04	146	0	0				45	0	0				A	38673203	C	A	38673203	3	1	81	1	0	0	0	0	1	0	0	0	14385	565	20	3	4307	3	SIPA1L3	19	38673203	Missense_Mutation	SNP	C	TCGA-2X-A9D6-01A-11D-A435-10	24405123	38673203	20455780	49	5644											
NKPD1	284353	mdanderson.org	37	chr19	45656858	45656858	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tactgccaggcgctaaagcgGatgaaaaggaactgcacgtt	12	9	0	1	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_198478	exon4	c.C837A	p.I279I	AAAGCGGATGAAA		14	2	0.14	21	0	0				13	0	0				T	45656858	G	T	45656858	2	4	81	1	0	0	0	0	0	0	0	1	10492	1164	41	3		3	NKPD1	19	45656858	Silent	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10	6983655	45656858	13472125	50	5645											
TRIM28	10155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	59060468	59060468	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagccacccgtcttcaaggTcttcccaggcagtaccactg	8	17	3	0	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	TRIM28,NS,carcinoma,+1,1	TRIM28	NM_005762	exon12	c.T1523A	p.V508D	TCAAGGTCTTCCC		244	48	0.2	307	0	0		1	1	2245	977	0.44				A	59060468	T	A	59060468	3	1	81	1	0	0	0	0	1	0	0	0	16562	1667	58	5	1569	5	TRIM28	19	59060468	Missense_Mutation	SNP	T	TCGA-2X-A9D6-01A-11D-A435-10	13403610	59060468	68515	51	5646											
CPXM1	56265	mdanderson.org	37	chr20	2778886	2778886	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaccatggatcggcgtcctGctcctcagcacaccaggctc	9	16	1	0	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	CPXM1,NS,carcinoma,0,1	CPXM1	NM_001184699	exon4	c.C502A	p.Q168K	CGTCCTGCTCCTC		47	3	0.06	39	0	0		0	1	147	0	0				T	2778886	G	T	2778886	3	4	81	1	0	0	0	0	1	0	0	0	3860	1328	46	2	1746	2	CPXM1	20	2778886	Missense_Mutation	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10		2778886	60246634	52	5647											
OVOL2	58495	mdanderson.org	37	chr20	18037394	18037394	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgggggtttcgctctcgggGgcgtgcggggacgagctgct	20	10	1	0	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_021220	exon2	c.C228A	p.A76A	CTCGGGGGCGTGC		11	2	0.18	26	0	0				5	0	0				T	18037394	G	T	18037394	2	4	81	1	0	0	0	0	0	0	0	1	11373	1219	43	3		3	OVOL2	20	18037394	Silent	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10	15258508	18037394	44988126	53	5648											
CSRP2BP	57325	mdanderson.org	37	chr20	18139746	18139746	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaaaagacgtctacctgGtggagcaccgtggcaggttg	15	8	1	1	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_020536	exon4	c.G519T	p.W173C	TACCTGGTGGAGC		78	4	0.05	100	0	0				89	0	0				T	18139746	G	T	18139746	3	4	81	1	0	0	0	0	1	0	0	0	3993	1270	44	3	533	3	CSRP2BP	20	18139746	Missense_Mutation	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10	102352	18139746	44885774	54	5649											
RALY	22913	broad.mit.edu	37	chr20	32664877	32664877	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggcgccggcggcggcggCggtggtggtggcagcggtgg	26	9	0	0	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	RALY	NM_016732	exon8	c.C702T	p.G234G	CGGCGGCGGTGGT		75	4	0.05	96	1	0.0104166667		44		170	0	0				T	32664877	C	T	32664877	2	4	81	1	0	0	0	0	0	0	0	1	13070	755	27	1		1	RALY	20	32664877	Silent	SNP	C	TCGA-2X-A9D6-01A-11D-A435-10	14525131	32664877	30360643	55	5650											
MRPL40	64976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	19422334	19422334	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aaggagcgcttgaaaaggaaGatccgaaaactggaaaaggc	13	6	0	2	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_003776	exon3	c.G213C	p.K71N	AAGGAAGATCCGA		115	12	0.1	133	0	0				181	36	0.2				C	19422334	G	C	19422334	3	2	81	1	0	0	0	0	1	0	0	0	9852	933	33	5	223	5	MRPL40	22	19422334	Missense_Mutation	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10		19422334	31882232	56	5651											
SLC35E4	339665	mdanderson.org	37	chr22	31042971	31042971	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agttcgtggcctcctgggctGcccgtcgggggctgtggcgg	19	12	0	0	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_001001479	exon2	c.G1006T	p.A336S	TGGGCTGCCCGTC		34	3	0.09	53	0	0				20	0	0				T	31042971	G	T	31042971	3	4	81	1	0	0	0	0	1	0	0	0	14641	1319	46	2	1012	2	SLC35E4	22	31042971	Missense_Mutation	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10	11620637	31042971	20261595	57	5652											
CDC42EP1	11135	broad.mit.edu	37	chr22	37964340	37964340	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gactccagcccccgctgcaaAccccccagcccctactgcaa	6	22	0	0	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	CDC42EP1,middle_lobe,carcinoma,0,1	CDC42EP1	NM_152243	exon3	c.A689C	p.N230T	CTGCAAACCCCCC		46	7	0.15	51	5	0.0980392157		53	1	112	2	0.02				C	37964340	A	C	37964340	3	2	81	1	0	0	0	0	1	0	0	0	3097	43	2	4	695	4	CDC42EP1	22	37964340	Missense_Mutation	SNP	A	TCGA-2X-A9D6-01A-11D-A435-10	6921369	37964340	13340226	58	5653											
TYMP	1890	mdanderson.org	37	chr22	50965054	50965054	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgggcctgcgccgtccatGcagagcagcgcctcctccac	13	18	0	1	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_001113756	exon6	c.C879T	p.C293C	GTCCATGCAGAGC		29	3	0.1	33	0	0				261	0	0				A	50965054	G	A	50965054	2	1	81	1	0	0	0	0	0	0	0	1	16872	1311	46	2		2	TYMP	22	50965054	Silent	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10	13000714	50965054	339512	59	5654											
CLDN2	9075	mdanderson.org	37	chrX	106172012	106172012	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcatcctctgcttttcctGctcatcccagagaaatcgct	5	14	3	1	novel		TCGA-2X-A9D6-01A-11D-A435-10	TCGA-2X-A9D6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b979e342-5eb9-45ee-a81e-0e39fb7ad8d8	a1cea35c-93b2-46a3-88f0-2115e5c0e5ed	.	.	NM_001171092	exon2	c.G554T	p.C185F	TTTCCTGCTCATC		39	3	0.08	35	0	0				0	0					T	106172012	G	T	106172012	3	4	81	1	0	0	0	0	1	0	0	0	3504	1319	46	2	556	2	CLDN2	23	106172012	Missense_Mutation	SNP	G	TCGA-2X-A9D6-01A-11D-A435-10		106172012	49098548	60	5655											
FBXO2	26232	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	11709267	11709267	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcgtagaggcaaccagcgtcGctgcggcccgagtacctgct	13	14	0	1	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_012168	exon5	c.C633G	p.S211R	AGCGTCGCTGCGG		72	14	0.19	84	0	0				21	8	0.38				C	11709267	G	C	11709267	3	2	82	1	0	0	0	0	1	0	0	0	5764	1078	38	5	265	5	FBXO2	1	11709267	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10		11709267	237541354	1	5656											
AKIRIN1	79647	mdanderson.org	37	chr1	39469060	39469060	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aattcacacatgatcagattAtgcgacggtatgggacaagg	11	7	2	2	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_024595	exon4	c.A538G	p.M180V	CAGATTATGCGAC		48	3	0.06	57	0	0				232	0	0				G	39469060	A	G	39469060	3	3	82	1	0	0	0	0	1	0	0	0	458	449	16	4	552	4	AKIRIN1	1	39469060	Missense_Mutation	SNP	A	TCGA-4K-AA1G-01A-11D-A435-10	27759793	39469060	209781561	2	5657											
PABPC4	8761	mdanderson.org	37	chr1	40030789	40030789	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cacacccacctgtgggactgCtggcacaaagtagccacccg	10	16	0	0	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_003819	exon8	c.G1234T	p.A412S	GGACTGCTGGCAC		40	3	0.08	62	0	0				360	0	0				A	40030789	C	A	40030789	3	1	82	1	0	0	0	0	1	0	0	0	11412	797	28	2	780	2	PABPC4	1	40030789	Missense_Mutation	SNP	C	TCGA-4K-AA1G-01A-11D-A435-10	561729	40030789	209219832	3	5658											
DPH2	1802	mdanderson.org	37	chr1	44438207	44438207	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatgaggatgagggaagcgGctgataccatgtggggctgg	18	6	0	3	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_001384	exon6	c.G1466T	p.G489V	GAAGCGGCTGATA		49	3	0.06	83	0	0				115	0	0				T	44438207	G	T	44438207	3	4	82	1	0	0	0	0	1	0	0	0	4747	1203	42	2	1488	2	DPH2	1	44438207	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	4407418	44438207	204812414	4	5659											
PLK3	1263	mdanderson.org	37	chr1	45266604	45266604	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagccgcgtcgccaagccGcatcagcgcgagaaggtggg	16	13	1	2	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_004073	exon2	c.G303A	p.P101P	CAAGCCGCATCAG		67	4	0.06	94	0	0				7	0	0				A	45266604	G	A	45266604	2	1	82	1	0	0	0	0	0	0	0	1	12144	1074	38	1		1	PLK3	1	45266604	Silent	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	828397	45266604	203984017	5	5660											
FGGY	55277	broad.mit.edu	37	chr1	59811958	59811958	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	catcatgtggctggaccatcGagcagtcagtcaagttaaca	10	10	3	0	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	FGGY_ENST00000303721,colon,carcinoma,+1,2	FGGY	NM_001113411	exon4	c.G353T	p.R118L	ACCATCGAGCAGT		100	3	0.03	154	0	0		99	2	16	0	0				T	59811958	G	T	59811958	3	4	82	1	0	0	0	0	1	0	0	0	5903	1058	37	1	363	1	FGGY	1	59811958	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	14545354	59811958	189438663	6	5661											
LMO4	8543	broad.mit.edu;mdanderson.org	37	chr1	87797776	87797776	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaagcggtgcgcaggctgCgggggcaagattgcggaccg	20	9	0	1	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	LMO4	NM_006769	exon2	c.C78T	p.C26C	AGGCTGCGGGGGC		74	4	0.05	109	0	0		21		172	0	0				T	87797776	C	T	87797776	2	4	82	1	0	0	0	0	0	0	0	1	8894	776	27	1		1	LMO4	1	87797776	Silent	SNP	C	TCGA-4K-AA1G-01A-11D-A435-10	27985818	87797776	161452845	7	5662											
CD46	4179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	207941164	207941164	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatctccagcgtccagtgcCtcaggtttagtaatttcctg	8	11	2	0	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_172359	exon8	c.C942T	p.A314A	CAGTGCCTCAGGT		109	31	0.28	110	0	0				74	19	0.26				T	207941164	C	T	207941164	2	4	82	1	0	0	0	0	0	0	0	1	3040	668	24	3		3	CD46	1	207941164	Silent	SNP	C	TCGA-4K-AA1G-01A-11D-A435-10	120143388	207941164	41309457	8	5663											
EPT1	85465	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	26596369	26596369	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatctttggaagaggatcaActggtgtcagtgtttttgtt	11	6	3	1	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	.	.	.	.	GGATCAACTGGTG		167	39	0.23	162	1	0.0061728395				23	10	0.43				G	26596369	A	G	26596369	3	3	82	1	0	0	0	0	1	0	0	0	5227	43	2	4	463	4	EPT1	2	26596369	Missense_Mutation	SNP	A	TCGA-4K-AA1G-01A-11D-A435-10		26596369	216603004	9	5664											
TLX2	3196	mdanderson.org	37	chr2	74743244	74743244	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaactcgtcgctcttcgcGctgcagaacctgcagccctg	9	17	1	1	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_016170	exon3	c.G783T	p.A261A	CTTCGCGCTGCAG		50	3	0.06	66	0	0				4	0	0				T	74743244	G	T	74743244	2	4	82	1	0	0	0	0	0	0	0	1	16020	1074	38	1		1	TLX2	2	74743244	Silent	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	48146875	74743244	168456129	10	5665											
GLS	2744	mdanderson.org	37	chr2	191746158	191746158	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggagacggacgcgtttggCaacagcgagggcaaagagct	18	8	0	2	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_014905	exon1	c.C348T	p.G116G	GTTTGGCAACAGC		55	4	0.07	61	0	0				8	0	0				T	191746158	C	T	191746158	2	4	82	1	0	0	0	0	0	0	0	1	6504	697	25	2		2	GLS	2	191746158	Silent	SNP	C	TCGA-4K-AA1G-01A-11D-A435-10	117002914	191746158	51453215	11	5666											
COLQ	8292	mdanderson.org	37	chr3	15516961	15516961	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cattggtcctcttgaccctgGcaagcccatcatacccaggt	8	15	2	1	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_005677	exon7	c.C499A	p.P167T	ACCCTGGCAAGCC		48	3	0.06	103	0	0				0	0					T	15516961	G	T	15516961	3	4	82	1	0	0	0	0	1	0	0	0	3736	1203	42	2	912	2	COLQ	3	15516961	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10		15516961	182505469	12	5667											
DYNC1LI1	51143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr3	32578558	32578558	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aaatcaaaatgttcatctctGtagtcatgttctttctccaa	4	9	6	0	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_016141	exon6	c.C777G	p.Y259X	ATCTCTGTAGTCA		249	54	0.22	300	0	0				103	3	0.03				C	32578558	G	C	32578558	4	2	82	1	0	0	0	0	0	1	0	0	4870	1372	48	5	826	5	DYNC1LI1	3	32578558	Nonsense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	17061597	32578558	165443872	13	5668											
DLEC1	9940	mdanderson.org	37	chr3	38103775	38103775	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	aggaagaagcttgctgagttCgaagatgagttagaccacac	12	7	0	5	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	DLEC1_ENST00000346219,NS,carcinoma,0,6	DLEC1_ENST00000346219	NM_007335	exon4	c.C789A	p.F263L	TGAGTTCGAAGAT		29	3	0.1	65	0	0		0	6	0	0					A	38103775	C	A	38103775	3	1	82	1	0	0	0	0	1	0	0	0	4580	883	31	1	803	1	DLEC1	3	38103775	Missense_Mutation	SNP	C	TCGA-4K-AA1G-01A-11D-A435-10	5525217	38103775	159918655	14	5669											
MUC13	56667	mdanderson.org	37	chr3	124646755	124646755	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagggaaattagtttcagtGgtatcagctgcagctactgt	11	7	3	0	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_033049	exon2	c.C135A	p.T45T	TTCAGTGGTATCA		24	2	0.08	37	0	0				0	0					T	124646755	G	T	124646755	2	4	82	1	0	0	0	0	0	0	0	1	10018	1335	47	3		3	MUC13	3	124646755	Silent	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	86542980	124646755	73375675	15	5670											
MUC4	4585	hgsc.bcm.edu	37	chr3	195505828	195505828	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aagtgtcggtgacaggaagaGgggtggcgtgacctgtggat	19	5	0	3	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	MUC4_ENST00000463781,NS,carcinoma,-1,3	MUC4_ENST00000463781	NM_018406	exon2	c.C12623G	p.P4208R	GGAAGAGGGGTGG		101	5	0.05	103	0	0		-1	3	1	0	0				C	195505828	G	C	195505828	3	2	82	1	0	0	0	0	1	0	0	0	10025	1000	35	5		5	MUC4	3	195505828	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	70859073	195505828	2516602	16	5671											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	55599320	55599320	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgattttggtctagccagaGacatcaagaatgattctaat	9	6	3	4	rs121913506	bycluster	TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	KIT,colon,carcinoma,0,932	KIT	NM_000222	exon17	c.G2446C	p.D816H	GCCAGAGACATCA		55	39	0.71	74	0	0		0	932	242	241	1				C	55599320	G	C	55599320	3	2	82	1	0	0	0	0	1	0	0	0	8371	942	33	5	2512	5	KIT	4	55599320	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10		55599320	135554956	17	5672											
NPY1R	4886	mdanderson.org	37	chr4	164247178	164247178	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggctcatcagtcattacttGgtagatcaggaaaggcaaag	11	8	4	1	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	NPY1R,colon,carcinoma,+2,2	NPY1R	NM_000909	exon2	c.C529A	p.Q177K	TTACTTGGTAGAT		92	5	0.05	148	0	0		2	2	3	0	0				T	164247178	G	T	164247178	3	4	82	1	0	0	0	0	1	0	0	0	10655	1357	47	3	633	3	NPY1R	4	164247178	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	108647858	164247178	26907098	18	5673											
PCDHGB2	56103	mdanderson.org	37	chr5	140740430	140740430	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgataaccctccagtgttcaGccaggacgtgtacagggtca	11	12	2	0	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_032096	exon1	c.G728T	p.S243I	TGTTCAGCCAGGA		49	3	0.06	99	0	0				3	0	0				T	140740430	G	T	140740430	3	4	82	1	0	0	0	0	1	0	0	0	11609	971	34	2	730	2	PCDHGB2	5	140740430	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10		140740430	40174830	19	5674											
GLRA1	2741	mdanderson.org	37	chr5	151239421	151239421	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtgatctcatggaagtggGcccccttctcgttggcaaag	13	10	2	1	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_000171	exon4	c.C401T	p.A134V	AAGTGGGCCCCCT		75	4	0.05	122	0	0				0	0					A	151239421	G	A	151239421	3	1	82	1	0	0	0	0	1	0	0	0	6495	1203	42	2	996	2	GLRA1	5	151239421	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	10498991	151239421	29675839	20	5675											
ADAMTS2	9509	mdanderson.org	37	chr5	178581103	178581103	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cgggaccagtggaagcggtgGaaggcggcctgcaccagggg	20	10	0	0	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_014244	exon8	c.C1329A	p.F443L	GCGGTGGAAGGCG		23	3	0.13	29	0	0				5	0	0				T	178581103	G	T	178581103	3	4	82	1	0	0	0	0	1	0	0	0	264	1165	41	3	2441	3	ADAMTS2	5	178581103	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	27341682	178581103	2334157	21	5676											
LRRC61	65999	mdanderson.org	37	chr7	150034292	150034292	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctactggccaccccgggccaGctgcagtgtctggctgggct	14	15	1	0	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_023942	exon2	c.G342T	p.Q114H	GGGCCAGCTGCAG		20	3	0.15	28	0	0				28	0	0				T	150034292	G	T	150034292	3	4	82	1	0	0	0	0	1	0	0	0	9061	962	34	2	344	2	LRRC61	7	150034292	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10		150034292	9104371	22	5677											
FBXO16	157574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr8	28304723	28304723	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttagcctagttctgtcctGcaatttatttttcttatcat	4	9	4	0	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_172366	exon7	c.C808T	p.Q270X	TGTCCTGCAATTT		60	12	0.2	59	0	0				13	3	0.23				A	28304723	G	A	28304723	4	1	82	1	0	0	0	0	0	1	0	0	5761	1328	46	2	82	2	FBXO16	8	28304723	Nonsense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10		28304723	118059299	23	5678											
ZBTB10	65986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	81426189	81426189	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccagatggtgataggaatGtgaatgcaaatttattggct	13	4	0	3	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_023929	exon3	c.G1906A	p.V636M	AGGAATGTGAATG		92	17	0.18	100	0	0				48	20	0.42				A	81426189	G	A	81426189	3	1	82	1	0	0	0	0	1	0	0	0	17581	1377	48	3	1916	3	ZBTB10	8	81426189	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	53121466	81426189	64937833	24	5679											
NDRG1	10397	mdanderson.org	37	chr8	134274318	134274318	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggaggctgcgccgtcctGctggccaggggcgtccacgt	17	13	0	0	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_001135242	exon5	c.C298A	p.Q100K	CGTCCTGCTGGCC		31	3	0.1	81	0	0				33	0	0				T	134274318	G	T	134274318	3	4	82	1	0	0	0	0	1	0	0	0	10297	1328	46	2	934	2	NDRG1	8	134274318	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	52848129	134274318	12089704	25	5680											
RUSC2	9853	mdanderson.org	37	chr9	35548378	35548378	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtccaccctggtccacccaGgtctgtcagggaccccactc	9	18	2	0	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_014806	exon2	c.G1860T	p.Q620H	CACCCAGGTCTGT		34	3	0.09	40	0	0				41	0	0				T	35548378	G	T	35548378	3	4	82	1	0	0	0	0	1	0	0	0	13802	991	35	3	1862	3	RUSC2	9	35548378	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10		35548378	105665053	26	5681											
TJP2	9414	mdanderson.org	37	chr9	71840238	71840238	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtatggtctccggcttgGgagtcagatcttcgtaaagg	14	7	3	2	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_001170416	exon6	c.G1064T	p.G355V	GGCTTGGGAGTCA		46	3	0.07	45	0	0				24	0	0				T	71840238	G	T	71840238	3	4	82	1	0	0	0	0	1	0	0	0	15989	1232	43	3	1150	3	TJP2	9	71840238	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	36291860	71840238	69373193	27	5682											
NCOA4	8031	mdanderson.org	37	chr10	51585077	51585077	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	acagaggattggcttgtccaGaaccatcaggacccatgtaa	10	10	1	2	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_001145260	exon9	c.G1224T	p.Q408H	TGTCCAGAACCAT		33	3	0.09	50	0	0				151	1	0.01				T	51585077	G	T	51585077	3	4	82	1	0	0	0	0	1	0	0	0	10277	933	33	3	1254	3	NCOA4	10	51585077	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10		51585077	83949670	28	5683											
ALDH18A1	5832	mdanderson.org	37	chr10	97397134	97397134	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcaagcgttgtttgccaaaGgctacggctccactggtcac	11	13	1	0	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_001017423	exon4	c.C363A	p.A121A	GCCAAAGGCTACG		44	3	0.07	61	0	0				34	0	0				T	97397134	G	T	97397134	2	4	82	1	0	0	0	0	0	0	0	1	486	987	35	3		3	ALDH18A1	10	97397134	Silent	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	45812057	97397134	38137613	29	5684											
PI4K2A	55361	mdanderson.org	37	chr10	99400600	99400600	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttccgcaggtgcccggggGcgcggtccgagtggcggcgg	20	13	0	0	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_018425	exon1	c.G101T	p.G34V	CCGGGGGCGCGGT		34	3	0.09	46	0	0				12	0	0				T	99400600	G	T	99400600	3	4	82	1	0	0	0	0	1	0	0	0	11918	1203	42	2	103	2	PI4K2A	10	99400600	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	2003466	99400600	36134147	30	5685											
KRTAP5-3	387266	broad.mit.edu	37	chr11	1629385	1629385	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggagcctccacaggagccAcagccccccttgcagccccc	9	20	0	0	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	KRTAP5-3	NM_001012708	exon1	c.T231C	p.C77C	GGAGCCACAGCCC		102	8	0.08	132	2	0.0151515152		33		0	0					G	1629385	A	G	1629385	2	3	82	1	0	0	0	0	0	0	0	1	8601	157	6	4		4	KRTAP5-3	11	1629385	Silent	SNP	A	TCGA-4K-AA1G-01A-11D-A435-10		1629385	133377131	31	5686											
FAM160A2	84067	mdanderson.org	37	chr11	6239143	6239143	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcggtccacaccacgacgtGcctcacgcagatactccagg	10	16	1	1	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_032127	exon9	c.C1715A	p.A572E	CGACGTGCCTCAC		20	2	0.1	24	0	0				21	0	0				T	6239143	G	T	6239143	3	4	82	1	0	0	0	0	1	0	0	0	5499	1319	46	2	1261	2	FAM160A2	11	6239143	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	4609758	6239143	128767373	32	5687											
PIK3C2A	5286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	17121444	17121444	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agcttctgcgtctgtagtttGgggttgaagtgcatctctaa	12	7	3	1	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_002645	exon25	c.C4081G	p.Q1361E	TAGTTTGGGGTTG		70	21	0.3	104	0	0				40	23	0.58				C	17121444	G	C	17121444	3	2	82	1	0	0	0	0	1	0	0	0	11956	1357	47	5	1011	5	PIK3C2A	11	17121444	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	10882301	17121444	117885072	33	5688											
SIAE	54414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	124517336	124517336	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aaggtttcacgccagtcttcGatgagtgcagggaatgtgca	13	8	2	1	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_170601	exon7	c.C891T	p.I297I	GTCTTCGATGAGT		39	17	0.44	64	0	0				38	36	0.95				A	124517336	G	A	124517336	2	1	82	1	0	0	0	0	0	0	0	1	14352	1048	37	1		1	SIAE	11	124517336	Silent	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	107395892	124517336	10489180	34	5689											
PRDM10	56980	mdanderson.org	37	chr11	129772250	129772250	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgctgcttccgttcccgttGgtggtggtggtgatgatgta	15	8	0	2	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_020228	exon22	c.C3441A	p.T1147T	CCCGTTGGTGGTG		35	3	0.09	88	0	0				9	0	0				T	129772250	G	T	129772250	2	4	82	1	0	0	0	0	0	0	0	1	12502	1335	47	3		3	PRDM10	11	129772250	Silent	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	5254914	129772250	5234266	35	5690											
MRPS35	0	broad.mit.edu	37	chr12	27863571	27863572	+	RNA	INS	-	-	T													attcactcgatttttaaggaINSttttttttgttttcttttca					rs11324548	bycluster;by1000genomes	TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	MRPS35	.	.	.	.	TTAAGGATTTTTT		6	2	0.33	9	0	0		26		0	0					T	27863572	-	T	27863571	6	5	82	0	1	1	1	0	0	0	0	0	9892	348	12	0		0	MRPS35	12	27863571	RNA	INS	-	TCGA-4K-AA1G-01A-11D-A435-10		27863571	105988324	36	5691											
KCNH3	23416	ucsc.edu	37	chr12	49937278	49937278	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccagcgtctgtgacctggCcgtggaggtcctcttcatcc	12	15	3	1	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	KCNH3	NM_012284	exon5	c.C800A	p.A267D	ACCTGGCCGTGGA		13	4	0.31	14	0	0		88		20	0	0				A	49937278	C	A	49937278	3	1	82	1	0	0	0	0	1	0	0	0	8076	739	26	2	818	2	KCNH3	12	49937278	Missense_Mutation	SNP	C	TCGA-4K-AA1G-01A-11D-A435-10	22073707	49937278	83914617	37	5692											
SLC35E3	55508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	69140302	69140302	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaacatgagcctgaccctgGtgcacttcgtggtcacctgg	11	14	1	2	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_018656	exon1	c.G145C	p.V49L	ACCCTGGTGCACT		139	37	0.27	120	0	0				31	11	0.35				C	69140302	G	C	69140302	3	2	82	1	0	0	0	0	1	0	0	0	14640	1261	44	5	147	5	SLC35E3	12	69140302	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	19203024	69140302	64711593	38	5693											
CAPS2	84698	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	75716837	75716837	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agatgaatttggcaggtttgCtgtactaagtggaatatatg	12	3	0	2	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	CAPS2	NM_032606	exon5	c.G265C	p.A89P	GGTTTGCTGTACT		421	77	0.18	332	1	0.0030120482		96		0	0					G	75716837	C	G	75716837	3	3	82	1	0	0	0	0	1	0	0	0	2656	797	28	5	1464	5	CAPS2	12	75716837	Missense_Mutation	SNP	C	TCGA-4K-AA1G-01A-11D-A435-10	6576535	75716837	58135058	39	5694											
HVCN1	84329	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	111099034	111099034	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcaaggggggccctgggtgCggggccaggggcaggggcaa	23	9	1	0	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	HVCN1	NM_032369	exon4	c.G241A	p.A81T	TGGGTGCGGGGCC		215	8	0.04	226	0	0		38		111	0	0				T	111099034	C	T	111099034	3	4	82	1	0	0	0	0	1	0	0	0	7505	768	27	1	600	1	HVCN1	12	111099034	Missense_Mutation	SNP	C	TCGA-4K-AA1G-01A-11D-A435-10	35382197	111099034	22752861	40	5695											
RBM23	55147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	23374412	23374412	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccacgtaggcaatgcccttaGaacgacgtgagttccgatct	10	12	1	2	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_001077351	exon8	c.C617A	p.S206Y	CCCTTAGAACGAC		95	17	0.18	109	0	0				132	46	0.35				T	23374412	G	T	23374412	3	4	82	1	0	0	0	0	1	0	0	0	13174	942	33	3	730	3	RBM23	14	23374412	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10		23374412	83975128	41	5696											
NRL	4901	mdanderson.org	37	chr14	24550449	24550449	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtgctctgaacggctcagAggaagaggtgggaggggtcc	19	7	2	3	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_006177	exon3	c.T710A	p.L237H	GCTCAGAGGAAGA		29	3	0.1	49	0	0				3	0	0				T	24550449	A	T	24550449	3	4	82	1	0	0	0	0	1	0	0	0	10703	304	11	5	7	5	NRL	14	24550449	Missense_Mutation	SNP	A	TCGA-4K-AA1G-01A-11D-A435-10	1176037	24550449	82799091	42	5697											
NR2E3	10002	mdanderson.org	37	chr15	72106456	72106456	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	caccaccccagccagcccgtGaggtgacctgagcatgcgcc	11	18	0	3	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	NR2E3_ENST00000398840,NS,carcinoma,+2,3	NR2E3_ENST00000398840	NM_014249	exon8	c.G1098T	p.V366V	GCCCGTGAGGTGA		27	3	0.11	23	0	0		2	3	0	0					T	72106456	G	T	72106456	2	4	82	1	0	0	0	0	0	0	0	1	10673	1277	45	3		3	NR2E3	15	72106456	Silent	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10		72106456	30424936	43	5698											
SETD1A	9739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	30974776	30974776	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caacaacgaatgaaatactaTgaactaattgtcaatggctc	6	8	1	2	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_014712	exon5	c.T540C	p.Y180Y	ATACTATGAACTA		75	15	0.2	103	0	0				67	19	0.28				C	30974776	T	C	30974776	2	2	82	1	0	0	0	0	0	0	0	1	14183	1471	51	4		4	SETD1A	16	30974776	Silent	SNP	T	TCGA-4K-AA1G-01A-11D-A435-10		30974776	59379977	44	5699											
ELMO3	79767	mdanderson.org	37	chr16	67235503	67235503	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggctctcatgctggggctGctggagccgcgcatgcggac	16	13	1	0	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_024712	exon10	c.G1035A	p.L345L	GGGGCTGCTGGAG		31	3	0.1	55	0	0				5	0	0				A	67235503	G	A	67235503	2	1	82	1	0	0	0	0	0	0	0	1	5095	1306	46	2		2	ELMO3	16	67235503	Silent	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	36260727	67235503	23119250	45	5700											
CNTNAP4	85445	mdanderson.org	37	chr16	76496003	76496003	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcacctattattttggagGtaagaataggtgccaggctc	12	7	0	1	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_033401	exon9	c.1482+1G>T	.	TTGGAGGTAAGAA		41	3	0.07	90	0	0				0	0					T	76496003	G	T	76496003	5	4	82	1	0	0	0	0	0	0	1	0	3672	1275	44	3	1531	3	CNTNAP4	16	76496003	Splice_Site	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	9260500	76496003	13858750	46	5701											
RPL19	6143	hgsc.bcm.edu	37	chr17	37360424	37360424	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agctgaaggcagacaaggccCgcaagaagctcctggcgtaa	13	11	0	3	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	RPL19,NS,carcinoma,-1,1	RPL19	NM_000981	exon5	c.C451T	p.R151C	AAGGCCCGCAAGA		27	3	0.11	42	1	0.0238095238		-1	1	6239	7	0				T	37360424	C	T	37360424	3	4	82	1	0	0	0	0	1	0	0	0	13617	652	23	1	469	1	RPL19	17	37360424	Missense_Mutation	SNP	C	TCGA-4K-AA1G-01A-11D-A435-10		37360424	43834786	47	5702											
SRP68	6730	mdanderson.org	37	chr17	74037023	74037023	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggagcacttctctgaccGcacttgagtgatgagctctt	11	11	2	4	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	SRP68,caecum,carcinoma,0,3	SRP68	NM_014230	exon14	c.C1561A	p.R521R	CTGACCGCACTTG		52	3	0.06	42	0	0		0	3	164	0	0				T	74037023	G	T	74037023	2	4	82	1	0	0	0	0	0	0	0	1	15211	1086	38	1		1	SRP68	17	74037023	Silent	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	36676599	74037023	7158187	48	5703											
NDUFS7	374291	mdanderson.org	37	chr19	1393300	1393300	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtggtgaggggctgcgaccGcatcgtgcccgtggacatct	17	11	1	1	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_024407	exon7	c.G515A	p.R172H	GCGACCGCATCGT		45	3	0.07	35	0	0				151	0	0				A	1393300	G	A	1393300	3	1	82	1	0	0	0	0	1	0	0	0	10343	1087	38	1	541	1	NDUFS7	19	1393300	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10		1393300	57735683	49	5704											
TJP3	27134	mdanderson.org	37	chr19	3747807	3747807	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cacagctggatggctccttgGaggacaacctagacctccct	10	14	0	1	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_001267561	exon19	c.G2365T	p.E789X	TCCTTGGAGGACA		13	2	0.15	11	0	0				210	0	0				T	3747807	G	T	3747807	4	4	82	1	0	0	0	0	0	1	0	0	15990	1175	41	3	2507	3	TJP3	19	3747807	Nonsense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	2354507	3747807	55381176	50	5705											
LDLR	3949	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	11210902	11210902	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttcctctctctcagtggGcgacagatgcgaaagaaacg	10	11	2	2	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	LDLR	NM_001195800	exon2	c.G71T	p.G24V	CAGTGGGCGACAG		41	5	0.12	52	0	0		72		4	0	0				T	11210902	G	T	11210902	3	4	82	1	0	0	0	0	1	0	0	0	8742	1203	42	2	77	2	LDLR	19	11210902	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	7463095	11210902	47918081	51	5706											
CILP2	148113	mdanderson.org	37	chr19	19656103	19656103	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtggtccccttccgagagGgcacacctgcctcctggact	11	16	0	1	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_153221	exon8	c.G2749T	p.G917C	CGAGAGGGCACAC		45	3	0.07	86	0	0				8	0	0				T	19656103	G	T	19656103	3	4	82	1	0	0	0	0	1	0	0	0	3452	1232	43	3	2779	3	CILP2	19	19656103	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	8445201	19656103	39472880	52	5707											
FAM187B	148109	bcgsc.ca	37	chr19	35715837	35715837	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacgagcagcaccagcttcAgccccttgagcacggagtcc	10	17	1	1	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	FAM187B	NM_152481	exon2	c.T1001C	p.L334P	AGCTTCAGCCCCT		45	4	0.09	57	1	0.0175438596		28		0	0					G	35715837	A	G	35715837	3	3	82	1	0	0	0	0	1	0	0	0	5543	188	7	4	112	4	FAM187B	19	35715837	Missense_Mutation	SNP	A	TCGA-4K-AA1G-01A-11D-A435-10	16059734	35715837	23413146	53	5708											
GAPDHS	26330	broad.mit.edu	37	chr19	36033899	36033899	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccctcgccaaagtcatccacGagcgatttgggatcgtggaa	11	12	1	0	rs150710154	bycluster;alternate_allele	TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	GAPDHS	NM_014364	exon7	c.G712T	p.E238X	ATCCACGAGCGAT		94	3	0.03	129	0	0		34		6	0	0				T	36033899	G	T	36033899	4	4	82	1	0	0	0	0	0	1	0	0	6276	1059	37	1	738	1	GAPDHS	19	36033899	Nonsense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	318062	36033899	23095084	54	5709											
ZNF234	10780	broad.mit.edu	37	chr19	44661286	44661286	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acactggagagaaaccatacGtatgtaaagtgtgtggtaag	12	5	0	1	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	ZNF234	NM_006630	exon6	c.G1117T	p.V373L	CCATACGTATGTA		78	3	0.04	103	0	0		132		6	0	0				T	44661286	G	T	44661286	3	4	82	1	0	0	0	0	1	0	0	0	17844	1145	40	1	1131	1	ZNF234	19	44661286	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	8627387	44661286	14467697	55	5710											
GYS1	2997	mdanderson.org	37	chr19	49473877	49473877	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggatgatacgctgccgccGgctctgctgacagaaactgt	12	12	1	3	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_002103	exon14	c.C1735A	p.R579R	GCCGCCGGCTCTG		55	3	0.05	54	0	0				36	0	0				T	49473877	G	T	49473877	2	4	82	1	0	0	0	0	0	0	0	1	6952	1115	39	1		1	GYS1	19	49473877	Silent	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	4812591	49473877	9655106	56	5711											
CACNG8	59283	mdanderson.org	37	chr19	54466566	54466566	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catctgcaacaccaccaaccTcacggccggcggcgacgacg	10	18	2	0	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_031895	exon1	c.T170C	p.L57P	CCAACCTCACGGC		20	2	0.1	42	0	0				0	0					C	54466566	T	C	54466566	3	2	82	1	0	0	0	0	1	0	0	0	2581	1551	54	4	172	4	CACNG8	19	54466566	Missense_Mutation	SNP	T	TCGA-4K-AA1G-01A-11D-A435-10	4992689	54466566	4662417	57	5712											
ZNF8	7554	broad.mit.edu	37	chr19	58805784	58805784	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gggagtatttgtatacttacGactcacagattacagactca	8	8	2	2	rs147895869	bycluster;alternate_allele	TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	ZNF8	NM_021089	exon4	c.G610T	p.D204Y	ACTTACGACTCAC		148	4	0.03	180	0	0		60		14	0	0				T	58805784	G	T	58805784	3	4	82	1	0	0	0	0	1	0	0	0	18215	1058	37	1	624	1	ZNF8	19	58805784	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	4339218	58805784	323199	58	5713											
ATRN	8455	mdanderson.org	37	chr20	3557613	3557613	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccagaactgccagtgggaGccccggaatcaggagtgcat	14	11	1	1	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_139322	exon14	c.G2322T	p.E774D	GTGGGAGCCCCGG		37	3	0.08	61	0	0				112	0	0				T	3557613	G	T	3557613	3	4	82	1	0	0	0	0	1	0	0	0	1204	962	34	2	2376	2	ATRN	20	3557613	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10		3557613	59467907	59	5714											
XBP1	7494	mdanderson.org	37	chr22	29192120	29192120	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctgcacctgctgcagagGtgcacgtagtctgagtgctg	15	11	1	2	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_005080	exon4	c.C514A	p.P172T	GCAGAGGTGCACG		28	3	0.11	48	0	0				326	0	0				T	29192120	G	T	29192120	3	4	82	1	0	0	0	0	1	0	0	0	17481	1261	44	3	650	3	XBP1	22	29192120	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10		29192120	22112446	60	5715											
STARD8	9754	bcgsc.ca	37	chrX	67940201	67940201	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	catccacgtgcagcgcacggGccagccactgccacagagca	11	17	0	1	rs201883068		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	STARD8	NM_001142503	exon8	c.G1985C	p.G662A	GCACGGGCCAGCC		105	34	0.32	123	13	0.1056910569		282		81	0	0				C	67940201	G	C	67940201	3	2	82	1	0	0	0	0	1	0	0	0	15318	1203	42	5	2015	5	STARD8	23	67940201	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10		67940201	87330359	61	5716											
BTK	695	mdanderson.org	37	chrX	100625019	100625019	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaatccaccgcttccttaGttcttcagttggggagaaga	11	9	2	3	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_000061	exon5	c.C358A	p.L120I	TCCTTAGTTCTTC		42	3	0.07	62	0	0				3	0	0				T	100625019	G	T	100625019	3	4	82	1	0	0	0	0	1	0	0	0	1560	1020	36	3	1681	3	BTK	23	100625019	Missense_Mutation	SNP	G	TCGA-4K-AA1G-01A-11D-A435-10	32684818	100625019	54645541	62	5717											
PGD	5226	mdanderson.org	37	chr1	10479496	10479496	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctggcggcgggcagtcaGcactggggtccaggctggca	17	13	1	0	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_002631	exon12	c.G1232T	p.S411I	CAGTCAGCACTGG		37	3	0.08	29	0	0				376	0	0				T	10479496	G	T	10479496	3	4	83	1	0	0	0	0	1	0	0	0	11834	971	34	2	1278	2	PGD	1	10479496	Missense_Mutation	SNP	G	TCGA-4K-AA1H-01A-11D-A435-10		10479496	238771125	1	5718											
SLC26A9	115019	mdanderson.org	37	chr1	205890930	205890930	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgttgttggggtcggtggGgggcgcattctcaaagtcct	17	7	1	0	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_134325	exon17	c.C1819A	p.P607T	CGGTGGGGGGCGC		39	3	0.08	40	0	0				0	0					T	205890930	G	T	205890930	3	4	83	1	0	0	0	0	1	0	0	0	14578	1232	43	3	872	3	SLC26A9	1	205890930	Missense_Mutation	SNP	G	TCGA-4K-AA1H-01A-11D-A435-10	195411434	205890930	43359691	2	5719											
EPHX1	2052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	226019577	226019577	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caactacctgaagaaagtcaTctcctactggcggaatgaat	8	10	2	3	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_001136018	exon3	c.T281C	p.I94T	AAGTCATCTCCTA		125	7	0.06	106	0	0				267	8	0.03				C	226019577	T	C	226019577	3	2	83	1	0	0	0	0	1	0	0	0	5207	1435	50	4	287	4	EPHX1	1	226019577	Missense_Mutation	SNP	T	TCGA-4K-AA1H-01A-11D-A435-10	20128647	226019577	23231044	3	5720											
OBSCN	84033	mdanderson.org	37	chr1	228529235	228529235	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgcgcaagtacctgctgcAggcacggacagccattatca	12	12	1	0	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_001271223	exon85	c.A20825G	p.Q6942R	TGCTGCAGGCACG		33	3	0.09	29	0	0				5	0	0				G	228529235	A	G	228529235	3	3	83	1	0	0	0	0	1	0	0	0	10859	188	7	4	18244	4	OBSCN	1	228529235	Missense_Mutation	SNP	A	TCGA-4K-AA1H-01A-11D-A435-10	2509658	228529235	20721386	4	5721											
FMN2	56776	broad.mit.edu;mdanderson.org	37	chr1	240371502	240371502	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacccggagcgggcataccCcctcctccccctcttcccgg	8	22	1	0	rs200984130		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	FMN2	NM_020066	exon5	c.C3390T	p.P1130P	CATACCCCCTCCT		55	6	0.11	35	0	0		451		0	0					T	240371502	C	T	240371502	2	4	83	1	0	0	0	0	0	0	0	1	5982	610	22	3		3	FMN2	1	240371502	Silent	SNP	C	TCGA-4K-AA1H-01A-11D-A435-10	11842267	240371502	8879119	5	5722											
ZNF692	55657	mdanderson.org	37	chr1	249148143	249148143	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccaccactcaccactgtgCagcttcatgtgctccttcag	6	16	3	0	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_001136036	exon10	c.G1161A	p.L387L	ACTGTGCAGCTTC		68	4	0.06	57	0	0				43	0	0				T	249148143	C	T	249148143	2	4	83	1	0	0	0	0	0	0	0	1	18152	697	25	2		2	ZNF692	1	249148143	Silent	SNP	C	TCGA-4K-AA1H-01A-11D-A435-10	8776641	249148143	102478	6	5723											
MCM6	4175	mdanderson.org	37	chr2	136615517	136615517	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgctgttccatagcttcatGaatagcaacttgatcccgca	7	12	1	2	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_005915	exon10	c.C1420A	p.H474N	CTTCATGAATAGC		121	5	0.04	96	0	0				122	0	0				T	136615517	G	T	136615517	3	4	83	1	0	0	0	0	1	0	0	0	9440	1290	45	3	1077	3	MCM6	2	136615517	Missense_Mutation	SNP	G	TCGA-4K-AA1H-01A-11D-A435-10		136615517	106583856	7	5724											
STAB1	23166	mdanderson.org	37	chr3	52552811	52552811	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggttggctgtcggcggctgCggagcgaggacctgctggag	20	9	0	0	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_015136	exon48	c.C4960T	p.R1654W	CGGCTGCGGAGCG		75	4	0.05	40	0	0				25	0	0				T	52552811	C	T	52552811	3	4	83	1	0	0	0	0	1	0	0	0	15292	759	27	1	5150	1	STAB1	3	52552811	Missense_Mutation	SNP	C	TCGA-4K-AA1H-01A-11D-A435-10		52552811	145469619	8	5725											
KIT	3815	broad.mit.edu	37	chr4	55593613	55593613	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaagtacagtggaaggttgTtgaggagataaatggaaaca	14	2	0	3	rs121913521	bycluster	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	KIT,NS,carcinoma,-1,66	KIT	NM_000222	exon11	c.T1679G	p.V560G	AGGTTGTTGAGGA		113	4	0.04	79	0	0		7396	66	29	18	0.62	rescued with RNA-seq			G	55593613	T	G	55593613	3	3	83	1	0	0	0	0	1	0	0	0	8371	1725	60	4	1721	4	KIT	4	55593613	Missense_Mutation	SNP	T	TCGA-4K-AA1H-01A-11D-A435-10		55593613	135560663	9	5726											
ANK2	287	mdanderson.org	37	chr4	114263059	114263059	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgctgaggtggccagaaGcagggatgtggaggtactgt	17	5	0	2	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_001148	exon33	c.G4109T	p.S1370I	CCAGAAGCAGGGA		40	3	0.08	39	0	0				18	0	0				T	114263059	G	T	114263059	3	4	83	1	0	0	0	0	1	0	0	0	617	971	34	2	4304	2	ANK2	4	114263059	Missense_Mutation	SNP	G	TCGA-4K-AA1H-01A-11D-A435-10	58669446	114263059	76891217	10	5727											
IRX2	153572	mdanderson.org	37	chr5	2749899	2749899	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgcgcgtcgtagggtgcGccctggaaccaacaagagcc	15	12	0	1	rs149245392	bycluster;byfrequency;by1000genomes	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_001134222	exon2	c.C252A	p.G84G	GGGTGCGCCCTGG		23	3	0.13	18	0	0	0.004			0	0					T	2749899	G	T	2749899	2	4	83	1	0	0	0	0	0	0	0	1	7887	1074	38	1		1	IRX2	5	2749899	Silent	SNP	G	TCGA-4K-AA1H-01A-11D-A435-10		2749899	178165361	11	5728											
IL7R	3575	broad.mit.edu	37	chr5	35875632	35875632	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aggattaagcctatcgtatgGcccagtctccccgatcataa	8	12	2	0	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	IL7R	NM_002185	exon7	c.G819C	p.W273C	CGTATGGCCCAGT		133	9	0.07	77	0	0		200		223	0	0				C	35875632	G	C	35875632	3	2	83	1	0	0	0	0	1	0	0	0	7748	1212	42	5	845	5	IL7R	5	35875632	Missense_Mutation	SNP	G	TCGA-4K-AA1H-01A-11D-A435-10	33125733	35875632	145039628	12	5729											
NIPBL	25836	mdanderson.org	37	chr5	36986049	36986049	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatgacaaaaggacagagGgtaacaagagtaaagtagac	12	4	0	5	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_015384	exon10	c.G2767T	p.G923C	ACAGAGGGTAACA		42	3	0.07	58	0	0				17	0	0				T	36986049	G	T	36986049	3	4	83	1	0	0	0	0	1	0	0	0	10474	1232	43	3	2801	3	NIPBL	5	36986049	Missense_Mutation	SNP	G	TCGA-4K-AA1H-01A-11D-A435-10	1110417	36986049	143929211	13	5730											
SLC22A16	85413	mdanderson.org	37	chr6	110768107	110768107	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaagcgagcagccatgaagGtgtaataatcaactgcaaac	9	8	1	1	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_033125	exon3	c.C620A	p.T207N	ATGAAGGTGTAAT		47	3	0.06	59	0	0				0	0					T	110768107	G	T	110768107	3	4	83	1	0	0	0	0	1	0	0	0	14501	1261	44	3	1137	3	SLC22A16	6	110768107	Missense_Mutation	SNP	G	TCGA-4K-AA1H-01A-11D-A435-10		110768107	60346960	14	5731											
ARID1B	57492	broad.mit.edu;mdanderson.org	37	chr6	157100005	157100005	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcggcggcggcggcggCggaggaggaggaggcagcgg	27	9	0	0	rs184815562	bycluster;by1000genomes	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	ARID1B	NM_017519	exon1	c.C942A	p.G314G	CGGCGGCGGAGGA		45	6	0.13	36	0	0		320		0	0					A	157100005	C	A	157100005	2	1	83	1	0	0	0	0	0	0	0	1	911	755	27	1		1	ARID1B	6	157100005	Silent	SNP	C	TCGA-4K-AA1H-01A-11D-A435-10	46331898	157100005	14015062	15	5732											
ARPC1B	10095	mdanderson.org	37	chr7	98988687	98988687	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgggtaagccacgacagCaccgtctgcctggctgatgc	13	14	1	1	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_005720	exon6	c.C672A	p.S224R	CGACAGCACCGTC		41	3	0.07	28	0	0				1230	0	0				A	98988687	C	A	98988687	3	1	83	1	0	0	0	0	1	0	0	0	969	709	25	2	690	2	ARPC1B	7	98988687	Missense_Mutation	SNP	C	TCGA-4K-AA1H-01A-11D-A435-10		98988687	60149976	16	5733											
ZNF786	136051	mdanderson.org	37	chr7	148769129	148769129	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccggcggaagctcttaccGcacacgccacaccggaagtg	11	15	1	0	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_152411	exon4	c.C735T	p.C245C	CTTACCGCACACG		44	3	0.07	46	0	0				3	0	0				A	148769129	G	A	148769129	2	1	83	1	0	0	0	0	0	0	0	1	18206	1079	38	1		1	ZNF786	7	148769129	Silent	SNP	G	TCGA-4K-AA1H-01A-11D-A435-10	49780442	148769129	10369534	17	5734											
REPIN1	29803	mdanderson.org	37	chr7	150069137	150069137	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccaccagtgccccgagtgCgggaagcgctttaccaataa	10	15	0	0	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_001099695	exon3	c.C978T	p.C326C	CGAGTGCGGGAAG		38	3	0.08	28	0	0				49	0	0				T	150069137	C	T	150069137	2	4	83	1	0	0	0	0	0	0	0	1	13278	776	27	1		1	REPIN1	7	150069137	Silent	SNP	C	TCGA-4K-AA1H-01A-11D-A435-10	1300008	150069137	9069526	18	5735											
SGK223	0	mdanderson.org	37	chr8	8176578	8176578	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggctggccgccgagtcccGcacgaagtcggaggcggtct	17	13	1	0	rs200725218	bycluster;by1000genomes	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_001080826	exon5	c.C3307T	p.R1103W	AGTCCCGCACGAA		36	3	0.08	27	0	0	0.002			31	0	0				A	8176578	G	A	8176578	3	1	83	1	0	0	0	0	1	0	0	0	14263	1086	38	1	905	1	SGK223	8	8176578	Missense_Mutation	SNP	G	TCGA-4K-AA1H-01A-11D-A435-10		8176578	138187444	19	5736											
PLEC	5339	mdanderson.org	37	chr8	144992667	144992667	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatggtctgctcggtgtaGgggtcacggtagccggtgac	18	8	2	2	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_201380	exon32	c.C11733A	p.P3911P	GGTGTAGGGGTCA		35	3	0.09	28	0	0				110	0	0				T	144992667	G	T	144992667	2	4	83	1	0	0	0	0	0	0	0	1	12099	987	35	3		3	PLEC	8	144992667	Silent	SNP	G	TCGA-4K-AA1H-01A-11D-A435-10	136816089	144992667	1371355	20	5737											
CPSF1	29894	mdanderson.org	37	chr8	145622455	145622455	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctctggcggctgcccagCgccaccagcagcacctcctt	10	19	1	0	rs113296524	bycluster;byfrequency;by1000genomes	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_013291	exon23	c.G2559A	p.A853A	GCCCAGCGCCACC		13	2	0.15	21	0	0	0.009			46	0	0				T	145622455	C	T	145622455	2	4	83	1	0	0	0	0	0	0	0	1	3847	755	27	1		1	CPSF1	8	145622455	Silent	SNP	C	TCGA-4K-AA1H-01A-11D-A435-10	629788	145622455	741567	21	5738											
OR51B4	79339	hgsc.bcm.edu	37	chr11	5322649	5322649	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttatgacatcttgatggagGcaaaatgtgtgcaagagggc	13	5	1	3	rs377539411		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_033179	exon1	c.C528T	p.C176C	ATGGAGGCAAAAT		94	4	0.04	105	0	0				0	0					A	5322649	G	A	5322649	2	1	83	1	0	0	0	0	0	0	0	1	11137	1195	42	2		2	OR51B4	11	5322649	Silent	SNP	G	TCGA-4K-AA1H-01A-11D-A435-10		5322649	129683867	22	5739											
OR5M3	219482	ucsc.edu	37	chr11	56237578	56237578	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagacaacccttgacattttActgccataaagcagaggatt	7	10	0	3	rs61902881	bycluster	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	OR5M3	NM_001004742	exon1	c.T396C	p.S132S	CATTTTACTGCCA		44	6	0.14	57	2	0.0350877193		103		0	0					G	56237578	A	G	56237578	2	3	83	1	0	0	0	0	0	0	0	1	11221	388	14	4		4	OR5M3	11	56237578	Silent	SNP	A	TCGA-4K-AA1H-01A-11D-A435-10	50914929	56237578	78768938	23	5740											
WDR74	54663	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	62601760	62601760	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ccactcaccttgccgaaggtCaatttctgccagctgcccat	7	16	3	0	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	WDR74	NM_018093	exon9	c.G763T	p.D255Y	GAAGGTCAATTTC		107	7	0.07	105	0	0		36		190	44	0.23				A	62601760	C	A	62601760	3	1	83	1	0	0	0	0	1	0	0	0	17383	826	29	3	410	3	WDR74	11	62601760	Missense_Mutation	SNP	C	TCGA-4K-AA1H-01A-11D-A435-10	6364182	62601760	72404756	24	5741											
RELA	5970	mdanderson.org	37	chr11	65425788	65425788	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtactggaattccatggGctcactgagctcccggtcgg	13	12	1	1	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_001243985	exon8	c.C847A	p.P283T	CCATGGGCTCACT		39	3	0.08	64	0	0				146	0	0				T	65425788	G	T	65425788	3	4	83	1	0	0	0	0	1	0	0	0	13267	1203	42	2	824	2	RELA	11	65425788	Missense_Mutation	SNP	G	TCGA-4K-AA1H-01A-11D-A435-10	2824028	65425788	69580728	25	5742											
UVRAG	7405	broad.mit.edu	37	chr11	75852423	75852423	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actgaatgaaaacgtatccaGcttccgccggccgcgcagga	11	13	0	2	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	UVRAG	NM_003369	exon15	c.G2066T	p.S689I	TATCCAGCTTCCG		48	3	0.06	24	0	0		69		58	0	0				T	75852423	G	T	75852423	3	4	83	1	0	0	0	0	1	0	0	0	17167	971	34	2	2124	2	UVRAG	11	75852423	Missense_Mutation	SNP	G	TCGA-4K-AA1H-01A-11D-A435-10	10426635	75852423	59154093	26	5743											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530	bycluster	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	KRAS_ENST00000256078,NS,adenocarcinoma,+1,25136	KRAS_ENST00000256078	NM_004985	exon2	c.G34A	p.G12S	CGCCACCAGCTCC		188	23	0.12	143	0	0		1	25136	25	3	0.12				T	25398285	C	T	25398285	3	4	83	1	0	0	0	0	1	0	0	0	8480	594	21	3	672	3	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-4K-AA1H-01A-11D-A435-10		25398285	108453610	27	5744											
LTA4H	4048	hgsc.bcm.edu	37	chr12	96400148	96400148	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagaagagagatccttcaGgtctgtggcattgaatgaat	12	5	2	5	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_000895	exon16	c.C1474A	p.L492M	CCTTCAGGTCTGT		87	4	0.05	45	0	0				247	0	0				T	96400148	G	T	96400148	3	4	83	1	0	0	0	0	1	0	0	0	9113	991	35	3	377	3	LTA4H	12	96400148	Missense_Mutation	SNP	G	TCGA-4K-AA1H-01A-11D-A435-10	71001863	96400148	37451747	28	5745											
SMAD9	4093	mdanderson.org	37	chr13	37453517	37453517	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcggcttcagctcgtggtGggactgcagatccggccagc	15	13	1	1	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_005905	exon2	c.C310A	p.H104N	CGTGGTGGGACTG		41	3	0.07	36	0	0				3	0	0				T	37453517	G	T	37453517	3	4	83	1	0	0	0	0	1	0	0	0	14817	1348	47	3	1117	3	SMAD9	13	37453517	Missense_Mutation	SNP	G	TCGA-4K-AA1H-01A-11D-A435-10		37453517	77716361	29	5746											
SLTM	79811	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr15	59192108	59192108	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaagaggtttagatacttcTtgtgtaccatcaccagaacc	9	9	2	3	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_024755	exon7	c.A618G	p.Q206Q	TACTTCTTGTGTA		78	6	0.08	52	0	0				41	1	0.02				C	59192108	T	C	59192108	2	2	83	1	0	0	0	0	0	0	0	1	14807	1606	56	4		4	SLTM	15	59192108	Silent	SNP	T	TCGA-4K-AA1H-01A-11D-A435-10		59192108	43339284	30	5747											
HCN4	10021	mdanderson.org	37	chr15	73660493	73660493	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgcggctggggtcttggCggcccccggccccctcctcc	13	20	1	0	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_005477	exon1	c.G119A	p.R40H	TCTTGGCGGCCCC		37	3	0.08	22	0	0				1	0	0				T	73660493	C	T	73660493	3	4	83	1	0	0	0	0	1	0	0	0	7039	768	27	1	3524	1	HCN4	15	73660493	Missense_Mutation	SNP	C	TCGA-4K-AA1H-01A-11D-A435-10	14468385	73660493	28870899	31	5748											
SLCO3A1	28232	hgsc.bcm.edu	37	chr15	92694221	92694221	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcttacgctttgggagttcTttttctcctccttcgtttgt	8	10	3	0	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_013272	exon9	c.T1730C	p.L577P	GAGTTCTTTTTCT		92	4	0.04	45	0	0				42	1	0.02				C	92694221	T	C	92694221	3	2	83	1	0	0	0	0	1	0	0	0	14782	1609	56	4	1764	4	SLCO3A1	15	92694221	Missense_Mutation	SNP	T	TCGA-4K-AA1H-01A-11D-A435-10	19033728	92694221	9837171	32	5749											
FLYWCH1	84256	mdanderson.org	37	chr16	2987340	2987340	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggcggcctggaggccctgCggcagcgggagcacttcccc	17	15	0	0	rs370316946		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_020912	exon7	c.C1729T	p.R577W	GCCCTGCGGCAGC		13	2	0.15	17	0	0				22	0	0				T	2987340	C	T	2987340	3	4	83	1	0	0	0	0	1	0	0	0	5979	759	27	1	1747	1	FLYWCH1	16	2987340	Missense_Mutation	SNP	C	TCGA-4K-AA1H-01A-11D-A435-10		2987340	87367413	33	5750											
IL34	146433	mdanderson.org	37	chr16	70690989	70690989	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaagtacctgcaggaggtgGagacgctgctgctgaatgtc	16	8	0	2	rs8046424	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_001172772	exon5	c.G367T	p.E123X	GAGGTGGAGACGC		56	3	0.05	57	0	0				45	0	0				T	70690989	G	T	70690989	4	4	83	1	0	0	0	0	0	1	0	0	7737	1175	41	3	381	3	IL34	16	70690989	Nonsense_Mutation	SNP	G	TCGA-4K-AA1H-01A-11D-A435-10	67703649	70690989	19663764	34	5751											
RARA	0	broad.mit.edu	37	chr17	38510615	38510615	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catgaccttctcggacgggcTgaccctgaaccggacccaga	11	15	1	4	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	RARA	NM_000964	exon7	c.T869C	p.L290P	ACGGGCTGACCCT		136	5	0.04	104	0	0		52		94	4	0.04	rescued with RNA-seq			C	38510615	T	C	38510615	3	2	83	1	0	0	0	0	1	0	0	0	13103	1580	55	4	1058	4	RARA	17	38510615	Missense_Mutation	SNP	T	TCGA-4K-AA1H-01A-11D-A435-10		38510615	42684595	35	5752											
NOTCH3	4854	bcgsc.ca	37	chr19	15291593	15291593	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggccccagtctggacgcagCgacccccgttttgacaaggc	12	15	1	1	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	NOTCH3	NM_000435	exon19	c.G3041A	p.R1014H	ACGCAGCGACCCC		43	4	0.09	46	0	0		340		31	0	0				T	15291593	C	T	15291593	3	4	83	1	0	0	0	0	1	0	0	0	10596	768	27	1	3984	1	NOTCH3	19	15291593	Missense_Mutation	SNP	C	TCGA-4K-AA1H-01A-11D-A435-10		15291593	43837390	36	5753											
CEACAM7	1087	bcgsc.ca	37	chr19	42190800	42190800	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tatcactcacagaatacgtaGaattgtctggttacttcttc	6	9	4	2	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	CEACAM7	NM_006890	exon2	c.C417A	p.F139L	TACGTAGAATTGT		167	7	0.04	109	1	0.0091743119		33		0	0					T	42190800	G	T	42190800	3	4	83	1	0	0	0	0	1	0	0	0	3219	933	33	3	392	3	CEACAM7	19	42190800	Missense_Mutation	SNP	G	TCGA-4K-AA1H-01A-11D-A435-10	26899207	42190800	16938183	37	5754											
ZNF526	116115	ucsc.edu	37	chr19	42729230	42729230	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cactttgactccctagagaaAgaggagcgcaatgggttgga	13	8	0	3	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	ZNF526	NM_133444	exon3	c.A675G	p.K225K	AGAGAAAGAGGAG		94	1	0.01	87	0	0		51		40	5	0.13				G	42729230	A	G	42729230	3	3	83	1	0	0	0	0	1	0	0	0	18023	69	3	4	677	4	ZNF526	19	42729230	Missense_Mutation	SNP	A	TCGA-4K-AA1H-01A-11D-A435-10	538430	42729230	16399753	38	5755											
ZNF28	7576	ucsc.edu	37	chr19	53304611	53304611	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gttgatagacttctcaacttGattaccaattttcccttcag	5	10	2	3	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	ZNF28	NM_006969	exon4	c.C487G	p.Q163E	CAACTTGATTACC		107	5	0.05	69	2	0.0289855072		191		14	4	0.29				C	53304611	G	C	53304611	3	2	83	1	0	0	0	0	1	0	0	0	17870	1299	45	5	1673	5	ZNF28	19	53304611	Missense_Mutation	SNP	G	TCGA-4K-AA1H-01A-11D-A435-10	10575381	53304611	5824372	39	5756											
ZNF264	9422	mdanderson.org	37	chr19	57723163	57723163	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagttaagccctatgaatGcacagaatgtgggaaaacct	11	7	0	2	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_003417	exon4	c.G698T	p.C233F	ATGAATGCACAGA		54	3	0.06	56	0	0				9	0	0				T	57723163	G	T	57723163	3	4	83	1	0	0	0	0	1	0	0	0	17861	1319	46	2	712	2	ZNF264	19	57723163	Missense_Mutation	SNP	G	TCGA-4K-AA1H-01A-11D-A435-10	4418552	57723163	1405820	40	5757											
NCOA3	8202	hgsc.bcm.edu;mdanderson.org	37	chr20	46279845	46279845	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcaacagcagcaGcagcagcagcagcagcagca	12	14	0	0	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	NCOA3,NS,carcinoma,0,1	NCOA3	NM_181659	exon20	c.G3771A	p.Q1257Q	GCAGCAGCAGCAG		81	14	0.17	76	0	0		0	1	33	0	0				A	46279845	G	A	46279845	2	1	83	1	0	0	0	0	0	0	0	1	10276	962	34	2		2	NCOA3	20	46279845	Silent	SNP	G	TCGA-4K-AA1H-01A-11D-A435-10		46279845	16745675	41	5758											
DIP2A	23181	mdanderson.org	37	chr21	47969714	47969714	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctctgtgaccgtgctgcaCgacgaccggattgtcctggt	12	12	1	1	rs199823306	bycluster;by1000genomes	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_206889	exon22	c.C2553T	p.H851H	GCTGCACGACGAC		47	3	0.06	36	0	0	0			18	0	0				T	47969714	C	T	47969714	2	4	83	1	0	0	0	0	0	0	0	1	4555	535	19	1		1	DIP2A	21	47969714	Silent	SNP	C	TCGA-4K-AA1H-01A-11D-A435-10		47969714	160181	42	5759											
CRELD2	79174	mdanderson.org	37	chr22	50319192	50319192	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acggaagatgcctgtgtgccGccggcagaggctggtgagtg	18	9	0	3	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	CRELD2_ENST00000404488,NS,malignant_melanoma,+2,2	CRELD2_ENST00000404488	NM_001135101	exon10	c.G1143T	p.P381P	TGTGCCGCCGGCA		40	3	0.08	43	0	0		2	2	195	0	0				T	50319192	G	T	50319192	2	4	83	1	0	0	0	0	0	0	0	1	3890	1074	38	1		1	CRELD2	22	50319192	Silent	SNP	G	TCGA-4K-AA1H-01A-11D-A435-10		50319192	985374	43	5760											
WNK3	65267	mdanderson.org	37	chrX	54263899	54263899	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	taataaaggcttcttcactaGaatggtttgtctcactgaac	7	8	3	2	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_020922	exon20	c.C4100A	p.S1367Y	TCACTAGAATGGT		16	2	0.13	18	0	0				3	0	0				T	54263899	G	T	54263899	3	4	83	1	0	0	0	0	1	0	0	0	17438	942	33	3	1322	3	WNK3	23	54263899	Missense_Mutation	SNP	G	TCGA-4K-AA1H-01A-11D-A435-10		54263899	101006661	44	5761											
TAS1R3	83756	mdanderson.org	37	chr1	1269228	1269228	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcccgctcacgggctgccTgagcacactcttcctgcagg	10	18	2	1	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_152228	exon6	c.T1943C	p.L648P	GCTGCCTGAGCAC		24	3	0.13	32	0	0				2	0	0				C	1269228	T	C	1269228	3	2	84	1	0	0	0	0	1	0	0	0	15620	1580	55	4	1965	4	TAS1R3	1	1269228	Missense_Mutation	SNP	T	TCGA-4K-AA1I-01A-11D-A435-10		1269228	247981393	1	5762											
MMP23B	8510	mdanderson.org	37	chr1	1569981	1569981	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgaccacctactcctggCgagtccgtgtgcggggctga	14	13	0	2	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_006983	exon8	c.C1153T	p.R385X	TCCTGGCGAGTCC		68	3	0.04	85	0	0				3	0	0				T	1569981	C	T	1569981	4	4	84	1	0	0	0	0	0	1	0	0	9708	760	27	1	1183	1	MMP23B	1	1569981	Nonsense_Mutation	SNP	C	TCGA-4K-AA1I-01A-11D-A435-10	300753	1569981	247680640	2	5763											
PRAMEF2	65122	hgsc.bcm.edu	37	chr1	12921136	12921136	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaacctattagaagaggaCttgaagtgtctctcccagtt	10	9	1	3	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	PRAMEF2,pharynx,carcinoma,0,1	PRAMEF2	NM_023014	exon4	c.C927T	p.D309D	AGAGGACTTGAAG		81	6	0.07	103	1	0.0097087379		0	1	0	0					T	12921136	C	T	12921136	2	4	84	1	0	0	0	0	0	0	0	1	12483	564	20	3		3	PRAMEF2	1	12921136	Silent	SNP	C	TCGA-4K-AA1I-01A-11D-A435-10	11351155	12921136	236329485	3	5764											
PRAMEF4	400735	ucsc.edu	37	chr1	12939904	12939904	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acagttagttattgtgaggaActttaacgaggtcttcagac	10	6	2	2	rs77146569	byfrequency	TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	PRAMEF4	NM_001009611	exon4	c.T898G	p.F300V	TGAGGAACTTTAA		17	6	0.35	25	5	0.2		62		0	0					C	12939904	A	C	12939904	3	2	84	1	0	0	0	0	1	0	0	0	12487	43	2	4	542	4	PRAMEF4	1	12939904	Missense_Mutation	SNP	A	TCGA-4K-AA1I-01A-11D-A435-10	18768	12939904	236310717	4	5765											
ASB17	127247	mdanderson.org	37	chr1	76388026	76388026	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacttaatgggcttggacaGtatactggtgtgaaagttct	11	7	1	1	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_080868	exon2	c.C420A	p.Y140X	TGGACAGTATACT		39	3	0.08	42	0	0				0	0					T	76388026	G	T	76388026	4	4	84	1	0	0	0	0	0	1	0	0	1020	1024	36	3	475	3	ASB17	1	76388026	Nonsense_Mutation	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10	63448122	76388026	172862595	5	5766											
DNASE2B	58511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	84880280	84880280	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	agaaacctggcagcgaaaaaGacaagagcttccttcaaact	8	10	1	3	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_021233	exon6	c.G815C	p.R272T	GAAAAAGACAAGA		159	19	0.12	160	0	0				6	0	0				C	84880280	G	C	84880280	3	2	84	1	0	0	0	0	1	0	0	0	4692	942	33	5	837	5	DNASE2B	1	84880280	Missense_Mutation	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10	8492254	84880280	164370341	6	5767											
AKNAD1	254268	mdanderson.org	37	chr1	109391643	109391643	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaagtgcctttctgagagGttggtgacaacttagagaga	14	5	1	4	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_152763	exon4	c.C1073T	p.T358I	TGAGAGGTTGGTG		31	3	0.1	46	0	0				0	0					A	109391643	G	A	109391643	3	1	84	1	0	0	0	0	1	0	0	0	461	1261	44	3	1489	3	AKNAD1	1	109391643	Missense_Mutation	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10	24511363	109391643	139858978	7	5768											
DENND4B	9909	mdanderson.org	37	chr1	153914440	153914440	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggcaggccagcgggacagCacagcgatggcacgccggct	16	13	0	0	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	DENND4B_ENST00000361217,NS,carcinoma,-1,2	DENND4B_ENST00000361217	NM_014856	exon6	c.G960A	p.V320V	GGACAGCACAGCG		20	2	0.1	18	0	0		-1	2	35	0	0				T	153914440	C	T	153914440	2	4	84	1	0	0	0	0	0	0	0	1	4462	697	25	2		2	DENND4B	1	153914440	Silent	SNP	C	TCGA-4K-AA1I-01A-11D-A435-10	44522797	153914440	95336181	8	5769											
SOX13	9580	mdanderson.org	37	chr1	204092289	204092289	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caaggagcggctggaggacgGctgtgtgcacccactggagg	18	10	0	0	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_005686	exon11	c.G1184A	p.G395D	AGGACGGCTGTGT		115	5	0.04	132	0	0				142	0	0				A	204092289	G	A	204092289	3	1	84	1	0	0	0	0	1	0	0	0	14997	1203	42	2	1222	2	SOX13	1	204092289	Missense_Mutation	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10	50177849	204092289	45158332	9	5770											
EPAS1	2034	broad.mit.edu	37	chr2	46605204	46605204	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	caccacccccagtgccaccaGcagcagcagcagctgctcca	8	20	0	0	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	EPAS1	NM_001430	exon10	c.G1421C	p.S474T	CCACCAGCAGCAG		83	3	0.04	86	0	0		83		91	0	0				C	46605204	G	C	46605204	3	2	84	1	0	0	0	0	1	0	0	0	5178	971	34	5	1459	5	EPAS1	2	46605204	Missense_Mutation	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10		46605204	196594169	10	5771											
PUS10	150962	broad.mit.edu	37	chr2	61238921	61238921	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtatggaagtttgtaaggTgcatgaaaatccacaccaca	9	7	0	1	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	PUS10	NM_144709	exon2	c.A105C	p.A35A	GTAAGGTGCATGA		73	15	0.21	53	5	0.0943396226		49		15	0	0				G	61238921	T	G	61238921	2	3	84	1	0	0	0	0	0	0	0	1	12882	1683	59	4		4	PUS10	2	61238921	Silent	SNP	T	TCGA-4K-AA1I-01A-11D-A435-10	14633717	61238921	181960452	11	5772											
TBC1D8	11138	mdanderson.org	37	chr2	101643904	101643904	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aattgagacttccgggataaCgactcgaagcttgaggaaag	12	7	0	2	rs201720097	bycluster;by1000genomes;alternate_allele	TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_001102426	exon15	c.G2416A	p.V806I	GGATAACGACTCG		38	3	0.08	58	0	0				29	0	0				T	101643904	C	T	101643904	3	4	84	1	0	0	0	0	1	0	0	0	15684	536	19	1	1030	1	TBC1D8	2	101643904	Missense_Mutation	SNP	C	TCGA-4K-AA1I-01A-11D-A435-10	40404983	101643904	141555469	12	5773											
KLHL30	377007	broad.mit.edu	37	chr2	239059588	239059588	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggcctacgacacggttcGggacacctggacccgccacg	14	15	0	0	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	KLHL30	NM_198582	exon8	c.G1619T	p.R540L	CGGTTCGGGACAC		117	3	0.03	143	1	0.006993007		79		0	0					T	239059588	G	T	239059588	3	4	84	1	0	0	0	0	1	0	0	0	8426	1116	39	1	1645	1	KLHL30	2	239059588	Missense_Mutation	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10	137415684	239059588	4139785	13	5774											
AMOTL2	51421	mdanderson.org	37	chr3	134084676	134084676	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cactctgagcaagcagcttgGccaccatgtcctgactgccg	10	15	1	2	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_016201	exon5	c.C1262T	p.A421V	AGCTTGGCCACCA		47	3	0.06	49	0	0				15	0	0				A	134084676	G	A	134084676	3	1	84	1	0	0	0	0	1	0	0	0	580	1203	42	2	1104	2	AMOTL2	3	134084676	Missense_Mutation	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10		134084676	63937754	14	5775											
NKD2	85409	broad.mit.edu	37	chr5	1038447	1038449	+	In_Frame_Del	DEL	CAC	CAC	-													agcaccaccaccaccacgagCaccaccaccaccaccaccac					rs75431263	alternate_allele	TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	CAC	CAC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	NKD2	NM_033120	exon10	c.1315_1317del	p.439_439del	CACGAGCACCACC		8	3	0.38	7	0	0		39		62	0	0				-	1038449	CAC	-	1038447	7	5	84	1	0	1	0	1	0	0	0	0	10488	710	25	0	1353	0	NKD2	5	1038447	In_Frame_Del	DEL	CAC	TCGA-4K-AA1I-01A-11D-A435-10		1038447	179876813	15	5776											
CEP120	153241	mdanderson.org	37	chr5	122729128	122729128	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgtaacatcatttcccaGtaaagagtagtaaaagaaaa	6	5	1	2	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_153223	exon7	c.C676A	p.L226M	TTCCCAGTAAAGA		87	4	0.05	77	0	0				20	0	0				T	122729128	G	T	122729128	3	4	84	1	0	0	0	0	1	0	0	0	3268	1020	36	3	2344	3	CEP120	5	122729128	Missense_Mutation	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10	121690681	122729128	58186132	16	5777											
AARS2	57505	broad.mit.edu;mdanderson.org	37	chr6	44268395	44268395	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccacgccttgccccccatGtggctgcacactgccagtgc	9	20	0	0	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	AARS2	NM_020745	exon22	c.C2847T	p.H949H	CCCCATGTGGCTG		55	8	0.15	51	0	0		77		114	26	0.23				A	44268395	G	A	44268395	2	1	84	1	0	0	0	0	0	0	0	1	20	1368	48	3		3	AARS2	6	44268395	Silent	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10		44268395	126846672	17	5778											
LPA	4018	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	160958956	160958956	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	catgtagtctggggatggcaGacaagctggcattactttgt	13	7	1	1	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	LPA	NM_005577	exon38	c.C5773T	p.L1925L	ATGGCAGACAAGC		127	6	0.05	161	0	0		237		0	0					A	160958956	G	A	160958956	2	1	84	1	0	0	0	0	0	0	0	1	8947	933	33	3		3	LPA	6	160958956	Silent	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10	116690561	160958956	10156111	18	5779											
ADCY1	107	mdanderson.org	37	chr7	45614334	45614334	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggcggccacgctgaaggcGctggccgttctcagcctgct	14	15	1	1	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_021116	exon1	c.G192A	p.A64A	GAAGGCGCTGGCC		13	2	0.15	16	0	0				0	0					A	45614334	G	A	45614334	2	1	84	1	0	0	0	0	0	0	0	1	291	1074	38	1		1	ADCY1	7	45614334	Silent	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10		45614334	113524329	19	5780											
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	110509211	110509211	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggaggtttatatgggatctAtatgaaccaagatggccttc	11	6	1	2	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	PKHD1L1,NS,carcinoma,+1,1	PKHD1L1	NM_177531	exon64	c.A10391G	p.Y3464C	GGATCTATATGAA		163	8	0.05	138	0	0		1	1	0	0					G	110509211	A	G	110509211	3	3	84	1	0	0	0	0	1	0	0	0	12019	449	16	4	10645	4	PKHD1L1	8	110509211	Missense_Mutation	SNP	A	TCGA-4K-AA1I-01A-11D-A435-10		110509211	35854811	20	5781											
COL14A1	7373	bcgsc.ca	37	chr8	121344415	121344415	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatggatcctcgggacctccAggaccaccagggccaatagt	12	13	0	0	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	COL14A1	NM_021110	exon41	c.A4695G	p.P1565P	ACCTCCAGGACCA		156	6	0.04	150	0	0		292		71	0	0				G	121344415	A	G	121344415	2	3	84	1	0	0	0	0	0	0	0	1	3694	175	7	4		4	COL14A1	8	121344415	Silent	SNP	A	TCGA-4K-AA1I-01A-11D-A435-10	10835204	121344415	25019607	21	5782											
CPSF1	29894	mdanderson.org	37	chr8	145623295	145623295	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acataggggtcggccacggcGcactgcacgatgggggcgcc	17	13	0	0	rs150747740	byfrequency	TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_013291	exon20	c.C1947T	p.C649C	CACGGCGCACTGC		50	3	0.06	74	0	0	0.001			93	0	0				A	145623295	G	A	145623295	2	1	84	1	0	0	0	0	0	0	0	1	3847	1079	38	1		1	CPSF1	8	145623295	Silent	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10	24278880	145623295	740727	22	5783											
PCSK5	5125	mdanderson.org	37	chr9	78936532	78936532	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagagatgtgtcaggactGcatccatgagaaaacatgca	10	10	1	2	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_001190482	exon30	c.G3998A	p.C1333Y	AGGACTGCATCCA		39	3	0.08	42	0	0				0	0					A	78936532	G	A	78936532	3	1	84	1	0	0	0	0	1	0	0	0	11649	1334	46	2		2	PCSK5	9	78936532	Missense_Mutation	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10		78936532	62276899	23	5784											
ALDOB	229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	104187142	104187142	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	taccatggcccgcttcataaAagcctcctgggttgcctcct	8	15	1	0	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_000035	exon8	c.T982G	p.F328V	TCATAAAAGCCTC		188	32	0.17	192	0	0				0	0					C	104187142	A	C	104187142	3	2	84	1	0	0	0	0	1	0	0	0	505	14	1	4	120	4	ALDOB	9	104187142	Missense_Mutation	SNP	A	TCGA-4K-AA1I-01A-11D-A435-10	25250610	104187142	37026289	24	5785											
DDIT4	54541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	74034751	74034751	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctggcactcgaccccagCctggtgcccaccttccagct	9	19	0	0	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_019058	exon3	c.C504T	p.S168S	CCCCAGCCTGGTG		66	7	0.11	72	0	0				401	78	0.19				T	74034751	C	T	74034751	2	4	84	1	0	0	0	0	0	0	0	1	4354	738	26	2		2	DDIT4	10	74034751	Silent	SNP	C	TCGA-4K-AA1I-01A-11D-A435-10		74034751	61499996	25	5786											
AP2A2	161	mdanderson.org	37	chr11	988573	988573	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagcgggacgtgagcgtgCggcagcgggccgtggacctc	19	12	0	2	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_001242837	exon10	c.C1156T	p.R386W	AGCGTGCGGCAGC		35	3	0.09	43	0	0				61	0	0				T	988573	C	T	988573	3	4	84	1	0	0	0	0	1	0	0	0	736	759	27	1	1191	1	AP2A2	11	988573	Missense_Mutation	SNP	C	TCGA-4K-AA1I-01A-11D-A435-10		988573	134017943	26	5787											
MTL5	9633	mdanderson.org	37	chr11	68483337	68483337	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaccgttcaatatcatgatGcaagttgttgcaacaattat	6	7	2	1	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_004923	exon7	c.C988A	p.H330N	CATGATGCAAGTT		52	3	0.06	65	1	0.0153846154				2	0	0				T	68483337	G	T	68483337	3	4	84	1	0	0	0	0	1	0	0	0	9983	1319	46	2	554	2	MTL5	11	68483337	Missense_Mutation	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10	67494764	68483337	66523179	27	5788											
MYO7A	4647	mdanderson.org	37	chr11	76867113	76867113	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcaacatgaaacgcaacaGccgagaccagtgctgcatca	8	13	2	2	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	MYO7A,NS,carcinoma,+1,1	MYO7A	NM_001127180	exon5	c.G446T	p.S149I	GCAACAGCCGAGA		47	3	0.06	71	0	0		1	1	3	0	0				T	76867113	G	T	76867113	3	4	84	1	0	0	0	0	1	0	0	0	10129	971	34	2	460	2	MYO7A	11	76867113	Missense_Mutation	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10	8383776	76867113	58139403	28	5789											
ERC1	23085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	1291122	1291122	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaacgcttaaaggagcagaGggacagagatgagcgagaga	16	5	0	5	rs200296939	by1000genomes;alternate_allele	TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_178040	exon10	c.G1907C	p.R636T	AGCAGAGGGACAG		184	13	0.07	166	0	0				35	9	0.26				C	1291122	G	C	1291122	3	2	84	1	0	0	0	0	1	0	0	0	5238	1000	35	5	1941	5	ERC1	12	1291122	Missense_Mutation	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10		1291122	132560773	29	5790											
PABPC3	5042	hgsc.bcm.edu	37	chr13	25671967	25671967	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaactttgactgcctccaGgttggcatctgcccctcctc	9	15	1	1	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_030979	exon1	c.G1631T	p.R544M	CCTCCAGGTTGGC		82	4	0.05	78	0	0				3	3	1				T	25671967	G	T	25671967	3	4	84	1	0	0	0	0	1	0	0	0	11411	1000	35	3	1633	3	PABPC3	13	25671967	Missense_Mutation	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10		25671967	89497911	30	5791											
POTEG	404785	broad.mit.edu	37	chr14	19553750	19553750	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttcccctgctgcagggggAgcggcaagagcaaagtgggc	17	11	0	1	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	POTEG	NM_001005356	exon1	c.A334G	p.S112G	AGGGGGAGCGGCA		1187	6	0.01	1172	3	0.002559727		118		0	0					G	19553750	A	G	19553750	3	3	84	1	0	0	0	0	1	0	0	0	12312	304	11	4	336	4	POTEG	14	19553750	Missense_Mutation	SNP	A	TCGA-4K-AA1I-01A-11D-A435-10		19553750	87795790	31	5792											
CHGA	1113	broad.mit.edu;mdanderson.org	37	chr14	93398975	93398975	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggagctgacggctgagaagCggctggaggggcaggaggag	22	6	0	2	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	CHGA	NM_001275	exon7	c.C1069T	p.R357W	GAGAAGCGGCTGG		23	3	0.13	40	0	0		32		25	0	0				T	93398975	C	T	93398975	3	4	84	1	0	0	0	0	1	0	0	0	3360	759	27	1	1095	1	CHGA	14	93398975	Missense_Mutation	SNP	C	TCGA-4K-AA1I-01A-11D-A435-10	73845225	93398975	13950565	32	5793											
EVL	51466	mdanderson.org	37	chr14	100593108	100593108	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagaagaacctcggccacaGgtgagagccctcctccccta	9	15	0	3	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_016337	exon5	c.G487T	p.G163W	GCCACAGGTGAGA		45	3	0.07	27	0	0				130	0	0				T	100593108	G	T	100593108	3	4	84	1	0	0	0	0	1	0	0	0	5319	1014	35	3	505	3	EVL	14	100593108	Missense_Mutation	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10	7194133	100593108	6756432	33	5794											
MYO5A	4644	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr15	52671830	52671830	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatcattctcaccagtatcaGtttctctaacacattcttgc	3	12	5	0	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_000259	exon18	c.C2200T	p.L734L	GTATCAGTTTCTC		138	9	0.07	106	0	0				50	8	0.16				A	52671830	G	A	52671830	2	1	84	1	0	0	0	0	0	0	0	1	10125	1020	36	3		3	MYO5A	15	52671830	Silent	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10		52671830	49859562	34	5795											
ADPGK	83440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	73044820	73044820	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctctctgtgccattctacTactggcttgtttgggtttaa	8	11	2	0	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_031284	exon7	c.A1353G	p.V451V	TTCTACTACTGGC		164	17	0.1	156	0	0				154	26	0.17				C	73044820	T	C	73044820	2	2	84	1	0	0	0	0	0	0	0	1	329	1509	53	4		4	ADPGK	15	73044820	Silent	SNP	T	TCGA-4K-AA1I-01A-11D-A435-10	20372990	73044820	29486572	35	5796											
C16orf89	146556	mdanderson.org	37	chr16	5112523	5112523	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atccccacgcgcaggctcagCggctgcagcaggggctcctg	14	16	1	0	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	C16orf89_ENST00000422873,NS,carcinoma,-1,3	C16orf89_ENST00000422873	NM_001098514	exon2	c.G261A	p.P87P	GCTCAGCGGCTGC		83	4	0.05	92	0	0		-1	3	1	0	0				T	5112523	C	T	5112523	2	4	84	1	0	0	0	0	0	0	0	1	1849	755	27	1		1	C16orf89	16	5112523	Silent	SNP	C	TCGA-4K-AA1I-01A-11D-A435-10		5112523	85242230	36	5797											
SLC12A3	6559	mdanderson.org	37	chr16	56906331	56906331	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagtggggacgctgatcccCccatctgaggacaaggcctc	12	13	1	2	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_001126108	exon7	c.C921A	p.P307P	GATCCCCCCATCT		40	3	0.08	59	0	0				8	0	0				A	56906331	C	A	56906331	2	1	84	1	0	0	0	0	0	0	0	1	14438	610	22	3		3	SLC12A3	16	56906331	Silent	SNP	C	TCGA-4K-AA1I-01A-11D-A435-10	51793808	56906331	33448422	37	5798											
TSNAXIP1	55815	mdanderson.org	37	chr16	67860079	67860079	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtggctgggggcccagagcGctggcagatgctggctgagg	21	9	0	3	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_018430	exon10	c.G1007A	p.R336H	CAGAGCGCTGGCA		42	3	0.07	46	0	0				1	0	0				A	67860079	G	A	67860079	3	1	84	1	0	0	0	0	1	0	0	0	16692	1087	38	1	1037	1	TSNAXIP1	16	67860079	Missense_Mutation	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10	10953748	67860079	22494674	38	5799											
CDC27	996	mdanderson.org	37	chr17	45234325	45234325	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tggtcctcctaataaacttcGaccagtttttggtttatttt	6	8	0	0	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_001114091	exon7	c.C796T	p.R266X	AACTTCGACCAGT		47	3	0.06	48	1	0.0208333333				63	0	0				A	45234325	G	A	45234325	4	1	84	1	0	0	0	0	0	1	0	0	3088	1066	37	1	1748	1	CDC27	17	45234325	Nonsense_Mutation	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10		45234325	35960885	39	5800											
CANT1	124583	broad.mit.edu	37	chr17	76993313	76993313	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgacagggtcaggtagcccTttttcaggtaactgaaccag	11	10	2	2	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	CANT1,NS,carcinoma,0,1	CANT1	NM_001159772	exon4	c.A392G	p.K131R	TAGCCCTTTTTCA		119	3	0.03	139	0	0		39	1	50	0	0				C	76993313	T	C	76993313	3	2	84	1	0	0	0	0	1	0	0	0	2635	1609	56	4	825	4	CANT1	17	76993313	Missense_Mutation	SNP	T	TCGA-4K-AA1I-01A-11D-A435-10	31758988	76993313	4201897	40	5801											
ENOSF1	55556	broad.mit.edu	37	chr18	712489	712497	+	In_Frame_Del	DEL	GGCGTCCGC	GGCGTCCGC	-													atggcgtccgcgcttaccatGgcgtccgcgcttaccatggc					novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	GGCGTCCGC	GGCGTCCGC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	ENOSF1	NM_202758	exon1	c.10_18del	p.4_6del	TACCATGGCGTCC		8	4	0.5	10	0	0		44		1	0	0				-	712497	GGCGTCCGC	-	712489	7	5	84	1	0	1	0	1	0	0	0	0	5153	1335	47	0	1440	0	ENOSF1	18	712489	In_Frame_Del	DEL	GGCGTCCGC	TCGA-4K-AA1I-01A-11D-A435-10		712489	77364759	41	5802											
KLHL14	57565	mdanderson.org	37	chr18	30260557	30260557	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accgacatgcatagaaactgGctcttctacaatgaaaagaa	7	9	2	3	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_020805	exon6	c.C1244A	p.A415D	AAACTGGCTCTTC		50	3	0.06	50	0	0				0	0					T	30260557	G	T	30260557	3	4	84	1	0	0	0	0	1	0	0	0	8412	1203	42	2	658	2	KLHL14	18	30260557	Missense_Mutation	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10	29548068	30260557	47816691	42	5803											
FZR1	51343	mdanderson.org	37	chr19	3525890	3525890	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagagatgcggcggaccctgAcgcctgccagctccccagtg	13	16	0	2	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_016263	exon3	c.A94G	p.T32A	ACCCTGACGCCTG		60	3	0.05	59	0	0				87	0	0				G	3525890	A	G	3525890	3	3	84	1	0	0	0	0	1	0	0	0	6172	275	10	4	100	4	FZR1	19	3525890	Missense_Mutation	SNP	A	TCGA-4K-AA1I-01A-11D-A435-10		3525890	55603093	43	5804											
MAG	4099	mdanderson.org	37	chr19	35800791	35800791	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagtcgcccctgtgctcCtcctggagtcccactgcgcg	11	18	0	0	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_080600	exon8	c.C1246T	p.L416F	GTGCTCCTCCTGG		25	2	0.08	36	0	0				1	0	0				T	35800791	C	T	35800791	3	4	84	1	0	0	0	0	1	0	0	0	9207	681	24	3	1268	3	MAG	19	35800791	Missense_Mutation	SNP	C	TCGA-4K-AA1I-01A-11D-A435-10	32274901	35800791	23328192	44	5805											
NR1H2	7376	mdanderson.org	37	chr19	50881647	50881647	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctttcatgcggcgcaagtgCcagcagtgccggctgcgcaa	14	13	1	0	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_007121	exon5	c.C423T	p.C141C	CAAGTGCCAGCAG		38	3	0.08	34	0	0				112	0	0				T	50881647	C	T	50881647	2	4	84	1	0	0	0	0	0	0	0	1	10664	747	26	2		2	NR1H2	19	50881647	Silent	SNP	C	TCGA-4K-AA1I-01A-11D-A435-10	15080856	50881647	8247336	45	5806											
NLRP5	126206	mdanderson.org	37	chr19	56515190	56515190	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagatggaaggagacaaatcGctcaccttttccagctacgg	10	10	1	2	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	NLRP5_ENST00000390649,NS,carcinoma,0,2	NLRP5_ENST00000390649	NM_153447	exon2	c.G171A	p.S57S	CAAATCGCTCACC		46	3	0.07	71	0	0		0	2	0	0					A	56515190	G	A	56515190	2	1	84	1	0	0	0	0	0	0	0	1	10526	1074	38	1		1	NLRP5	19	56515190	Silent	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10	5633543	56515190	2613793	46	5807											
RALY	22913	bcgsc.ca;mdanderson.org	37	chr20	32664877	32664877	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggcgccggcggcggcggCggtggtggtggcagcggtgg	26	9	0	0	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	RALY	NM_016732	exon8	c.C702T	p.G234G	CGGCGGCGGTGGT		83	6	0.07	97	1	0.0103092784		44		127	0	0				T	32664877	C	T	32664877	2	4	84	1	0	0	0	0	0	0	0	1	13070	755	27	1		1	RALY	20	32664877	Silent	SNP	C	TCGA-4K-AA1I-01A-11D-A435-10		32664877	30360643	47	5808											
HAUS7	55559	mdanderson.org	37	chrX	152722099	152722099	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccctggtgtcctcgaagtGctccatcaggctgcaaaggc	11	14	1	0	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_017518	exon6	c.C487A	p.H163N	CGAAGTGCTCCAT		42	3	0.07	61	0	0				118	0	0				T	152722099	G	T	152722099	3	4	84	1	0	0	0	0	1	0	0	0	7011	1319	46	2	639	2	HAUS7	23	152722099	Missense_Mutation	SNP	G	TCGA-4K-AA1I-01A-11D-A435-10		152722099	2548461	48	5809											
NOL9	79707	mdanderson.org	37	chr1	6614471	6614471	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgagccggcggcggggccggCggctgaggatgagctggggc	23	11	0	2	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_024654	exon1	c.G92A	p.R31H	GGCCGGCGGCTGA		23	2	0.09	21	0	0				0	0					T	6614471	C	T	6614471	3	4	85	1	0	0	0	0	1	0	0	0	10574	768	27	1	2064	1	NOL9	1	6614471	Missense_Mutation	SNP	C	TCGA-4K-AAAL-01A-11D-A435-10		6614471	242636150	1	5810											
PADI6	353238	broad.mit.edu	37	chr1	17706676	17706676	+	RNA	DEL	G	G	-													ttaaattccttttcttttgtGgggtatttttttgttttttt					novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	PADI6	.	.	.	.	TTTTGTGGGGTAT		6	2	0.33	8	0	0		51		0	0					-	17706676	G	-	17706676	6	5	85	0	1	1	0	1	0	0	0	0	11427	1363	47	0		0	PADI6	1	17706676	RNA	DEL	G	TCGA-4K-AAAL-01A-11D-A435-10	11092205	17706676	231543945	2	5811											
RLF	6018	mdanderson.org	37	chr1	40661433	40661433	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	aacagccagtagaaacggagGaaggtaagtcttaagactat	11	6	1	2	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_012421	exon4	c.G604T	p.E202X	ACGGAGGAAGGTA		43	3	0.07	55	0	0				0	0					T	40661433	G	T	40661433	4	4	85	1	0	0	0	0	0	1	0	0	13440	1175	41	3	618	3	RLF	1	40661433	Nonsense_Mutation	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10	22954757	40661433	208589188	3	5812											
KIF26B	55083	mdanderson.org	37	chr1	245861584	245861584	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgatgacgtggagcgcctgCagcggcgacgagggggtgcc	19	11	0	1	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_018012	exon13	c.C6001T	p.Q2001X	CGCCTGCAGCGGC		37	3	0.08	29	0	0				0	0					T	245861584	C	T	245861584	4	4	85	1	0	0	0	0	0	1	0	0	8336	711	25	2	6051	2	KIF26B	1	245861584	Nonsense_Mutation	SNP	C	TCGA-4K-AAAL-01A-11D-A435-10	205200151	245861584	3389037	4	5813											
ALMS1	7840	broad.mit.edu	37	chr2	73829423	73829423	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agagcatgttacagaccgagCgggatgcactattcaacatt	10	9	1	2	rs368113488		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	ALMS1	NM_015120	exon20	c.C12223T	p.R4075W	ACCGAGCGGGATG		255	5	0.02	276	0	0		384		41	0	0				T	73829423	C	T	73829423	3	4	85	1	0	0	0	0	1	0	0	0	531	759	27	1	12301	1	ALMS1	2	73829423	Missense_Mutation	SNP	C	TCGA-4K-AAAL-01A-11D-A435-10		73829423	169369950	5	5814											
ADRA2B	151	mdanderson.org	37	chr2	96781577	96781577	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tagcggtccaggctgatggcGcacaggtgcacgatggacga	16	10	0	1	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_000682	exon1	c.C312T	p.C104C	GATGGCGCACAGG		55	4	0.07	76	0	0				1	0	0				A	96781577	G	A	96781577	2	1	85	1	0	0	0	0	0	0	0	1	337	1079	38	1		1	ADRA2B	2	96781577	Silent	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10	22952154	96781577	146417796	6	5815											
PTMA	5757	mdanderson.org	37	chr2	232577532	232577532	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aggatgacgatgtcgataccAagaagcagaagaccgacgag	13	8	0	4	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001099285	exon5	c.A307C	p.K103Q	GATACCAAGAAGC		63	5	0.08	49	0	0				1382	0	0				C	232577532	A	C	232577532	3	2	85	1	0	0	0	0	1	0	0	0	12815	131	5	4	325	4	PTMA	2	232577532	Missense_Mutation	SNP	A	TCGA-4K-AAAL-01A-11D-A435-10	135795955	232577532	10621841	7	5816											
WDR52	55779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	113115371	113115371	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgtactgcttacccctgtGgctagaatttccccatcacg	7	13	1	1	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001164496	exon14	c.C1773T	p.A591A	CCCTGTGGCTAGA		77	28	0.36	55	0	0				0	0					A	113115371	G	A	113115371	2	1	85	1	0	0	0	0	0	0	0	1	17363	1335	47	3		3	WDR52	3	113115371	Silent	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10		113115371	84907059	8	5817											
FAM131A	131408	broad.mit.edu	37	chr3	184059803	184059803	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccacctccctgcacctgtGctccctggcctggtccttta	7	18	0	0	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	FAM131A	.	.	.	.	ACCTGTGCTCCCT		228	5	0.02	173	0	0		37		0	0					T	184059803	G	T	184059803	3	4	85	1	0	0	0	0	1	0	0	0	5470	1334	46	2		2	FAM131A	3	184059803	Missense_Mutation	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10	70944432	184059803	13962627	9	5818											
GK2	2712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	80328968	80328968	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aagttactatttcctggaatTtttttactaagatcctcaac	4	8	1	1	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_033214	exon1	c.A387T	p.K129N	TGGAATTTTTTTA		97	15	0.15	140	0	0				0	0					A	80328968	T	A	80328968	3	1	85	1	0	0	0	0	1	0	0	0	6462	1838	64	5	1278	5	GK2	4	80328968	Missense_Mutation	SNP	T	TCGA-4K-AAAL-01A-11D-A435-10		80328968	110825308	10	5819											
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	125590598	125590598	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tttttcccagctgatccagaCttggcagaattttctgattt	7	9	1	4	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_020337	exon4	c.G3834C	p.K1278N	TCCAGACTTGGCA		95	20	0.21	110	0	0				11	6	0.55				G	125590598	C	G	125590598	3	3	85	1	0	0	0	0	1	0	0	0	671	564	20	5	459	5	ANKRD50	4	125590598	Missense_Mutation	SNP	C	TCGA-4K-AAAL-01A-11D-A435-10	45261630	125590598	65563678	11	5820											
ADAMTS19	171019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	128984530	128984530	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gattgtaatggtcccagaaaAcaatacagaatatgtgagaa	9	5	0	3	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_133638	exon13	c.A2025G	p.K675K	CAGAAAACAATAC		147	20	0.14	213	0	0				2	1	0.5				G	128984530	A	G	128984530	2	3	85	1	0	0	0	0	0	0	0	1	263	40	2	4		4	ADAMTS19	5	128984530	Silent	SNP	A	TCGA-4K-AAAL-01A-11D-A435-10		128984530	51930730	12	5821											
FAM8A1	51439	hgsc.bcm.edu	37	chr6	17602826	17602826	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttttaatttacaggcagaGaatatgttattccatccttg	6	6	0	1	rs74444948	bycluster;byfrequency	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	FAM8A1,NS,carcinoma,-1,2	FAM8A1	NM_016255	exon2	c.G718T	p.E240X	GGCAGAGAATATG		42	6	0.14	36	0	0	0.008	-1	2	0	0					T	17602826	G	T	17602826	4	4	85	1	0	0	0	0	0	1	0	0	5679	943	33	3	724	3	FAM8A1	6	17602826	Nonsense_Mutation	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10		17602826	153512241	13	5822											
MUC21	394263	bcgsc.ca	37	chr6	30954559	30954560	+	Missense_Mutation	DNP	AC	AC	CT													ccaactctgagtccagcacaAcctccagtggggccagcaca					novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	AC	AC					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	MUC21	NM_001010909	exon2	c.C608T	p.T203L	AGCACAACCTCCA		58	7	0.12	83	2	0.0240963855		98		5	0	0				CT	30954560	AC	CT	30954559	3	2	85	1	0	0	0	0	1	0	0	0	10024	43	2	4	613	4	MUC21	6	30954559	Missense_Mutation	DNP	AC	TCGA-4K-AAAL-01A-11D-A435-10	13351733	30954559	140160508	14	5823											
TAP2	6891	mdanderson.org	37	chr6	32796783	32796783	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcaatcaccagcactgtgCgatccccacgggaattccag	10	14	1	0	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	.	.	.	.	ACTGTGCGATCCC		42	3	0.07	48	0	0				67	0	0				T	32796783	C	T	32796783	3	4	85	1	0	0	0	0	1	0	0	0	15607	768	27	1	188	1	TAP2	6	32796783	Missense_Mutation	SNP	C	TCGA-4K-AAAL-01A-11D-A435-10	1842224	32796783	138318284	15	5824											
TDRD6	221400	mdanderson.org	37	chr6	46656464	46656464	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgggcctggctcggcgggTgcccgacagcctcttccgtt	15	15	1	0	rs200156736	bycluster	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001168359	exon1	c.T599G	p.V200G	GGCGGGTGCCCGA		11	8	0.73	18	7	0.3888888889	0.004			0	0					G	46656464	T	G	46656464	3	3	85	1	0	0	0	0	1	0	0	0	15792	1696	59	4	601	4	TDRD6	6	46656464	Missense_Mutation	SNP	T	TCGA-4K-AAAL-01A-11D-A435-10	13859681	46656464	124458603	16	5825											
RAC1	5879	mdanderson.org	37	chr7	6414400	6414400	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtgtggtggtgggagacGggtgagtgcgcggccggggc	24	6	0	2	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_006908	exon1	c.G34A	p.G12R	GGAGACGGGTGAG		12	4	0.33	9	0	0				72	9	0.13				A	6414400	G	A	6414400	3	1	85	1	0	0	0	0	1	0	0	0	13025	1130	39	1	36	1	RAC1	7	6414400	Missense_Mutation	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10		6414400	152724263	17	5826											
WBSCR22	114049	broad.mit.edu	37	chr7	73111840	73111840	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcatccgaggccaccagaCtcggaggtaagcttgccatg	14	12	0	1	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	WBSCR22	NM_001202560	exon11	c.C746T	p.T249I	ACCAGACTCGGAG		30	6	0.2	20	0	0		27		76	33	0.43				T	73111840	C	T	73111840	3	4	85	1	0	0	0	0	1	0	0	0	17324	580	20	3		3	WBSCR22	7	73111840	Missense_Mutation	SNP	C	TCGA-4K-AAAL-01A-11D-A435-10	66697440	73111840	86026823	18	5827											
SLC25A13	10165	hgsc.bcm.edu;broad.mit.edu	37	chr7	95822404	95822406	+	In_Frame_Del	DEL	ATG	ATG	-													catgggggcggatggtgaccAtgatgtctcggaagtcgatg					novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	ATG	ATG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	SLC25A13	NM_001160210	exon6	c.559_561del	p.187_187del	GTGACCATGATGT		169	16	0.09	130	0	0		131		12	0	0				-	95822406	ATG	-	95822404	7	5	85	1	0	1	0	1	0	0	0	0	14529	217	8	0	1522	0	SLC25A13	7	95822404	In_Frame_Del	DEL	ATG	TCGA-4K-AAAL-01A-11D-A435-10	22710564	95822404	63316259	19	5828											
EPO	2056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	100320334	100320334	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggcctggccctgctgtcGgaagctgtcctgcggggcca	16	14	0	0	rs374875798		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_000799	exon4	c.G294A	p.S98S	GCTGTCGGAAGCT		128	11	0.09	104	0	0				2	0	0				A	100320334	G	A	100320334	2	1	85	1	0	0	0	0	0	0	0	1	5216	1103	39	1		1	EPO	7	100320334	Silent	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10	4497930	100320334	58818329	20	5829											
PEBP4	157310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	22582428	22582428	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	atagacaaagaactggtagcGatggaagccactgtgtgccg	13	8	0	2	rs201433464	bycluster;alternate_allele	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	PEBP4,colon,carcinoma,+1,3	PEBP4	NM_144962	exon6	c.C445T	p.R149C	GGTAGCGATGGAA		273	32	0.12	199	0	0		1	3	2	0	0				A	22582428	G	A	22582428	3	1	85	1	0	0	0	0	1	0	0	0	11760	1058	37	1	246	1	PEBP4	8	22582428	Missense_Mutation	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10		22582428	123781594	21	5830											
SNTG1	54212	broad.mit.edu	37	chr8	51449300	51449300	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtgggagaagcgatggtgCgacctcagactgatccctct	14	10	2	3	rs35419988		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	SNTG1_ENST00000518864,NS,carcinoma,0,2	SNTG1	NM_018967	exon11	c.C612T	p.C204C	ATGGTGCGACCTC		177	7	0.04	122	1	0.0081967213		304	2	0	0					T	51449300	C	T	51449300	2	4	85	1	0	0	0	0	0	0	0	1	14927	776	27	1		1	SNTG1	8	51449300	Silent	SNP	C	TCGA-4K-AAAL-01A-11D-A435-10	28866872	51449300	94914722	22	5831											
GABBR2	9568	mdanderson.org	37	chr9	101470851	101470851	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cggcatgaggcccatgatggAgagcggcgggctgctgggcg	20	10	0	3	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_005458	exon1	c.T169C	p.S57P	TGATGGAGAGCGG		13	3	0.23	15	0	0				0	0					G	101470851	A	G	101470851	3	3	85	1	0	0	0	0	1	0	0	0	6190	304	11	4	2732	4	GABBR2	9	101470851	Missense_Mutation	SNP	A	TCGA-4K-AAAL-01A-11D-A435-10		101470851	39742580	23	5832											
ZBTB43	23099	mdanderson.org	37	chr9	129595247	129595247	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agttataatggcctggtagaGagctttgagctgggctctgg	15	6	1	2	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001135776	exon2	c.G459T	p.E153D	GGTAGAGAGCTTT		49	3	0.06	83	0	0				0	0					T	129595247	G	T	129595247	3	4	85	1	0	0	0	0	1	0	0	0	17602	933	33	3	461	3	ZBTB43	9	129595247	Missense_Mutation	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10	28124396	129595247	11618184	24	5833											
ABO	28	broad.mit.edu;mdanderson.org	37	chr9	136131248	136131248	+	RNA	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tcgatgccgttggcctggtcGaccatcatggcctggtggca	14	12	1	0	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	ABO	.	.	.	.	CTGGTCGACCATC		66	4	0.06	107	0	0		30		2	0	0				T	136131248	G	T	136131248	1	4	85	0	1	0	0	0	0	0	0	0	97	1045	37	1		1	ABO	9	136131248	RNA	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10	6536001	136131248	5082183	25	5834											
LCN1	3933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	138415793	138415793	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cactacatcttttactgtgaGggcgagctgcacgggaagcc	12	11	1	1	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001252617	exon4	c.G360T	p.E120D	CTGTGAGGGCGAG		29	10	0.34	51	0	0				0	0					T	138415793	G	T	138415793	3	4	85	1	0	0	0	0	1	0	0	0	8718	991	35	3	374	3	LCN1	9	138415793	Missense_Mutation	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10	2284545	138415793	2797638	26	5835											
ZEB1	6935	mdanderson.org	37	chr10	31803542	31803542	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttacagagacatgtgacGcagtctgggtgtaatcgtaa	11	7	2	2	rs149166539	alternate_allele	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001174096	exon6	c.G699T	p.T233T	TGTGACGCAGTCT		49	3	0.06	52	0	0				2	0	0				T	31803542	G	T	31803542	2	4	85	1	0	0	0	0	0	0	0	1	17680	1074	38	1		1	ZEB1	10	31803542	Silent	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10		31803542	103731205	27	5836											
ZNF33A	7581	mdanderson.org	37	chr10	38343734	38343734	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtatatgtcaggaaaccCtccttgaaaaggcagtattc	8	9	1	1	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_006954	exon5	c.C682A	p.L228I	GAAACCCTCCTTG		46	3	0.07	62	0	0				7	0	0				A	38343734	C	A	38343734	3	1	85	1	0	0	0	0	1	0	0	0	17910	681	24	3	696	3	ZNF33A	10	38343734	Missense_Mutation	SNP	C	TCGA-4K-AAAL-01A-11D-A435-10	6540192	38343734	97191013	28	5837											
PACSIN3	29763	mdanderson.org	37	chr11	47202203	47202203	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgctcagccgccgtgaaaaAggcatgccaggccttctcca	10	16	2	1	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001184975	exon5	c.T250C	p.F84L	TGAAAAAGGCATG		16	2	0.13	18	0	0				41	0	0				G	47202203	A	G	47202203	3	3	85	1	0	0	0	0	1	0	0	0	11422	72	3	4	1052	4	PACSIN3	11	47202203	Missense_Mutation	SNP	A	TCGA-4K-AAAL-01A-11D-A435-10		47202203	87804313	29	5838											
OR4C3	256144	broad.mit.edu	37	chr11	48346502	48346502	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttttcccccatgcaattaGttctattacttatgtttctc	4	10	2	0	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	OR4C3	NM_001004702	exon1	c.G10T	p.V4F	CAATTAGTTCTAT		93	4	0.04	101	0	0		75		0	0					T	48346502	G	T	48346502	3	4	85	1	0	0	0	0	1	0	0	0	11097	1029	36	3	12	3	OR4C3	11	48346502	Missense_Mutation	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10	1144299	48346502	86660014	30	5839											
CD248	57124	mdanderson.org	37	chr11	66083957	66083957	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagaccaggtggaagggcGtggtatacacggctgggccg	19	8	0	1	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_020404	exon1	c.C542T	p.T181M	AAGGGCGTGGTAT		11	2	0.18	19	0	0				17	0	0				A	66083957	G	A	66083957	3	1	85	1	0	0	0	0	1	0	0	0	3011	1145	40	1	1735	1	CD248	11	66083957	Missense_Mutation	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10	17737455	66083957	68922559	31	5840											
HEPACAM	220296	mdanderson.org	37	chr11	124805885	124805885	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggaggctctggacagggcTcccctttctctcttcatttt	9	13	4	0	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_152722	exon1	c.A18G	p.G6G	CAGGGCTCCCCTT		52	3	0.06	81	0	0				0	0					C	124805885	T	C	124805885	2	2	85	1	0	0	0	0	0	0	0	1	7092	1538	54	4		4	HEPACAM	11	124805885	Silent	SNP	T	TCGA-4K-AAAL-01A-11D-A435-10	58721928	124805885	10200631	32	5841											
NCAPD3	23310	bcgsc.ca	37	chr11	134027845	134027845	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgactgcacgttttttctggGcttccagaatttaaagtgaa	9	7	1	3	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	NCAPD3	NM_015261	exon31	c.C4152T	p.S1384S	TTCTGGGCTTCCA		45	4	0.09	74	0	0		141		28	0	0				A	134027845	G	A	134027845	2	1	85	1	0	0	0	0	0	0	0	1	10252	1194	42	2		2	NCAPD3	11	134027845	Silent	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10	9221960	134027845	978671	33	5842											
FGF6	2251	mdanderson.org	37	chr12	4554548	4554548	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaatctctccagctagcccGgcgcgagacctggacagcag	12	15	1	1	rs7358740	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	FGF6,colon,carcinoma,-2,2	FGF6	NM_020996	exon1	c.C189A	p.A63A	TAGCCCGGCGCGA		67	3	0.04	46	0	0	0	-2	2	0	0					T	4554548	G	T	4554548	2	4	85	1	0	0	0	0	0	0	0	1	5888	1103	39	1		1	FGF6	12	4554548	Silent	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10		4554548	129297347	34	5843											
RBP5	0	broad.mit.edu	37	chr12	7281645	7281674	+	RNA	DEL	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	-													gttgcgcctgaccttggcttTtcctgaggaaggaacctgga					novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	RBP5	.	.	.	.	TGGCTTTTCCTGA		13	4	0.31	6	0	0		20		6	0	0				-	7281674	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	-	7281645	6	5	85	0	1	1	0	1	0	0	0	0	13210	1856	64	0		0	RBP5	12	7281645	RNA	DEL	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TCGA-4K-AAAL-01A-11D-A435-10	2727097	7281645	126570250	35	5844											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu	37	chr12	25378562	25378562	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acttacctgtcttgtctttgCtgatgtttcaataaaaggaa	7	7	3	1	rs121913527	alternate_allele	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	KRAS_ENST00000256078,colon,carcinoma,+1,137	KRAS_ENST00000256078	NM_004985	exon4	c.G436C	p.A146P	TCTTTGCTGATGT		118	9	0.08	54	1	0.0185185185		1	137	34	3	0.09				G	25378562	C	G	25378562	3	3	85	1	0	0	0	0	1	0	0	0	8480	797	28	5	262	5	KRAS	12	25378562	Missense_Mutation	SNP	C	TCGA-4K-AAAL-01A-11D-A435-10	18096917	25378562	108473333	36	5845											
APAF1	317	broad.mit.edu	37	chr12	99052954	99052954	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaggttgtttcccagggggAgtgcattgggtttcagttgg	16	6	1	0	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	APAF1	NM_181868	exon5	c.A543G	p.G181G	AGGGGGAGTGCAT		153	4	0.03	121	0	0		111		1	0	0				G	99052954	A	G	99052954	2	3	85	1	0	0	0	0	0	0	0	1	751	291	11	4		4	APAF1	12	99052954	Silent	SNP	A	TCGA-4K-AAAL-01A-11D-A435-10	73674392	99052954	34798941	37	5846											
PABPC3	5042	bcgsc.ca	37	chr13	25671027	25671027	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgatgaaagtggaaaatccAaaggatttggatttgtaagc	11	5	0	1	rs78826513	bycluster;byfrequency	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	PABPC3	NM_030979	exon1	c.A691G	p.K231E	AAATCCAAAGGAT		74	9	0.12	109	1	0.0091743119		129		29	0	0				G	25671027	A	G	25671027	3	3	85	1	0	0	0	0	1	0	0	0	11411	131	5	4	693	4	PABPC3	13	25671027	Missense_Mutation	SNP	A	TCGA-4K-AAAL-01A-11D-A435-10		25671027	89498851	38	5847											
NKX2-1	7080	mdanderson.org	37	chr14	36988207	36988207	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tactggcggggaagcgcgggTctgggttggcgccgtaccat	18	10	1	0	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001079668	exon2	c.A446C	p.D149A	CGCGGGTCTGGGT		17	7	0.41	13	3	0.2307692308				0	0					G	36988207	T	G	36988207	3	3	85	1	0	0	0	0	1	0	0	0	10495	1667	58	4	767	4	NKX2-1	14	36988207	Missense_Mutation	SNP	T	TCGA-4K-AAAL-01A-11D-A435-10		36988207	70361333	39	5848											
INO80	54617	broad.mit.edu	37	chr15	41277616	41277616	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgccgtttctcttcctgccGcagcctcactatcaagaaaa	6	14	3	1	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	INOC1,NS,carcinoma,0,2	INO80	NM_017553	exon32	c.C3841T	p.R1281W	CCTGCCGCAGCCT		131	5	0.04	139	1	0.0071942446		122	2	14	0	0				A	41277616	G	A	41277616	3	1	85	1	0	0	0	0	1	0	0	0	7789	1086	38	1	849	1	INO80	15	41277616	Missense_Mutation	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10		41277616	61253776	40	5849											
VPS13C	54832	hgsc.bcm.edu;mdanderson.org	37	chr15	62199517	62199517	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtccatgtaagttttctGgtaccagtaggatctgccca	9	9	2	0	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	VPS13C,NS,carcinoma,-1,1	VPS13C	NM_020821	exon66	c.C9051A	p.T3017T	TTTTCTGGTACCA		119	6	0.05	122	0	0		-1	1	5	0	0				T	62199517	G	T	62199517	2	4	85	1	0	0	0	0	0	0	0	1	17250	1335	47	3		3	VPS13C	15	62199517	Silent	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10	20921901	62199517	40331875	41	5850											
ZNF213	7760	mdanderson.org	37	chr16	3191015	3191015	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagccacacaagtgccctgaGtgcgacaagagcttccgcag	11	13	0	2	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001134655	exon6	c.G1047T	p.E349D	CCCTGAGTGCGAC		32	3	0.09	28	0	0				1	0	0				T	3191015	G	T	3191015	3	4	85	1	0	0	0	0	1	0	0	0	17826	1020	36	3	1065	3	ZNF213	16	3191015	Missense_Mutation	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10		3191015	87163738	42	5851											
ITGAL	3683	mdanderson.org	37	chr16	30531261	30531261	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcggggggctgctgctgctGctgctcattttcatagtgct	13	10	2	0	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_002209	exon30	c.G3312T	p.L1104L	GCTGCTGCTGCTC		24	3	0.13	29	0	0				15	0	0				T	30531261	G	T	30531261	2	4	85	1	0	0	0	0	0	0	0	1	7929	1306	46	2		2	ITGAL	16	30531261	Silent	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10	27340246	30531261	59823492	43	5852											
TEPP	374739	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	58011892	58011892	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acatggacagggacaccgtcAaggcctgccttcctgatgag	12	12	1	2	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_199046	exon2	c.A337C	p.K113Q	ACCGTCAAGGCCT		72	5	0.07	95	0	0				0	0					C	58011892	A	C	58011892	3	2	85	1	0	0	0	0	1	0	0	0	15818	131	5	4	343	4	TEPP	16	58011892	Missense_Mutation	SNP	A	TCGA-4K-AAAL-01A-11D-A435-10	27480631	58011892	32342861	44	5853											
C16orf70	80262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	67165195	67165195	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	aaacttttttttaggtgatcGaagtatgtgatttgactaaa	8	3	0	3	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_025187	exon4	c.G238C	p.E80Q	GTGATCGAAGTAT		182	20	0.11	215	0	0				10	0	0				C	67165195	G	C	67165195	3	2	85	1	0	0	0	0	1	0	0	0	1836	1059	37	5	252	5	C16orf70	16	67165195	Missense_Mutation	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10	9153303	67165195	23189558	45	5854											
ST3GAL2	6483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	70415679	70415679	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tccgcgtcgtgcacgccagtCttccggaactcgcccgcgta	11	17	1	0	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_006927	exon7	c.G966C	p.K322N	GCCAGTCTTCCGG		141	23	0.16	126	0	0				26	5	0.19				G	70415679	C	G	70415679	3	3	85	1	0	0	0	0	1	0	0	0	15270	912	32	5	90	5	ST3GAL2	16	70415679	Missense_Mutation	SNP	C	TCGA-4K-AAAL-01A-11D-A435-10	3250484	70415679	19939074	46	5855											
CDYL2	124359	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	80718479	80718479	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtgattcacgtcacattcaCccatatcttgctctccaaca	4	15	5	1	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_152342	exon2	c.G572A	p.G191D	CATTCACCCATAT		115	7	0.06	121	0	0				1	0	0				T	80718479	C	T	80718479	3	4	85	1	0	0	0	0	1	0	0	0	3208	507	18	3	972	3	CDYL2	16	80718479	Missense_Mutation	SNP	C	TCGA-4K-AAAL-01A-11D-A435-10	10302800	80718479	9636274	47	5856											
NLRP1	22861	mdanderson.org	37	chr17	5440172	5440172	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctgggtccccccttaccGtctgctgaagatgagcagct	11	13	2	3	rs199748129	alternate_allele	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	NLRP1,colon,carcinoma,0,1	NLRP1	NM_014922	exon8	c.C2959A	p.R987R	CTTACCGTCTGCT		38	3	0.08	67	0	0		0	1	2	0	0				T	5440172	G	T	5440172	2	4	85	1	0	0	0	0	0	0	0	1	10517	1159	40	1		1	NLRP1	17	5440172	Silent	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10		5440172	75755038	48	5857											
ALOX12B	242	mdanderson.org	37	chr17	7984268	7984268	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggaatgtgcacatagctgGgcaggccaggaagaaagact	15	7	0	2	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001139	exon4	c.C461A	p.P154H	TAGCTGGGCAGGC		42	3	0.07	60	0	0				0	0					T	7984268	G	T	7984268	3	4	85	1	0	0	0	0	1	0	0	0	533	1232	43	3	1692	3	ALOX12B	17	7984268	Missense_Mutation	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10	2544096	7984268	73210942	49	5858											
TBC1D29	26083	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	28887161	28887161	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaggtctatgcacacagggTtcctcattcagctggcttct	10	11	4	0	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	TBC1D29	NM_015594	exon2	c.T39C	p.G13G	ACAGGGTTCCTCA		206	47	0.23	237	1	0.0042194093		19		0	0					C	28887161	T	C	28887161	2	2	85	1	0	0	0	0	0	0	0	1	15674	1712	60	4		4	TBC1D29	17	28887161	Silent	SNP	T	TCGA-4K-AAAL-01A-11D-A435-10	20902893	28887161	52308049	50	5859											
MAP3K3	4215	mdanderson.org	37	chr17	61729923	61729923	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtttcttttcagaattatAgcgttcagccggcctgtgaa	9	9	3	2	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_203351	exon5	c.A267G	p.I89M	AATTATAGCGTTC		45	3	0.07	63	0	0				4	0	0				G	61729923	A	G	61729923	3	3	85	1	0	0	0	0	1	0	0	0	9300	410	15	4	285	4	MAP3K3	17	61729923	Missense_Mutation	SNP	A	TCGA-4K-AAAL-01A-11D-A435-10	32842762	61729923	19465287	51	5860											
TNRC6C	57690	mdanderson.org	37	chr17	76063992	76063992	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggggaacgcccccaaaaaAggacttcaaaaggtaagtac	11	9	1	0	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_018996	exon6	c.A2766G	p.K922K	CAAAAAAGGACTT		54	3	0.06	59	0	0				12	0	0				G	76063992	A	G	76063992	2	3	85	1	0	0	0	0	0	0	0	1	16401	69	3	4		4	TNRC6C	17	76063992	Silent	SNP	A	TCGA-4K-AAAL-01A-11D-A435-10	14334069	76063992	5131218	52	5861											
PGS1	9489	mdanderson.org	37	chr17	76396833	76396833	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	caggactgtgcggagattgcCgacttcttcacggagctggt	14	10	2	1	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_024419	exon6	c.C777A	p.A259A	GATTGCCGACTTC		51	3	0.06	64	0	0				26	0	0				A	76396833	C	A	76396833	2	1	85	1	0	0	0	0	0	0	0	1	11855	639	23	1		1	PGS1	17	76396833	Silent	SNP	C	TCGA-4K-AAAL-01A-11D-A435-10	332841	76396833	4798377	53	5862											
CHAF1A	10036	broad.mit.edu	37	chr19	4422659	4422661	+	In_Frame_Del	DEL	AAG	AAG	-													agcgggccaaggaggaggccAagaagaagaaggaggaagag					novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	AAG	AAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	CHAF1A	NM_005483	exon5	c.1114_1116del	p.372_372del	GAGGCCAAGAAGA		130	7	0.05	118	0	0		69		33	0	0				-	4422661	AAG	-	4422659	7	5	85	1	0	1	0	1	0	0	0	0	3333	131	5	0	1132	0	CHAF1A	19	4422659	In_Frame_Del	DEL	AAG	TCGA-4K-AAAL-01A-11D-A435-10		4422659	54706324	54	5863											
EMR1	2015	broad.mit.edu	37	chr19	6904062	6904062	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagatattgatgagtgccGccaagatccatcaacctgtg	10	10	1	4	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	EMR1	NM_001256253	exon8	c.G818A	p.R273H	AGTGCCGCCAAGA		126	4	0.03	98	0	0		153		0	0					A	6904062	G	A	6904062	3	1	85	1	0	0	0	0	1	0	0	0	5132	1087	38	1	848	1	EMR1	19	6904062	Missense_Mutation	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10	2481403	6904062	52224921	55	5864											
MAG	4099	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	35790581	35790581	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctgggccacgaggggctGggggagcccgctgtgctggg	22	10	0	0	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_080600	exon5	c.G540T	p.L180L	GGGGCTGGGGGAG		46	7	0.15	43	0	0				0	0					T	35790581	G	T	35790581	2	4	85	1	0	0	0	0	0	0	0	1	9207	1335	47	3		3	MAG	19	35790581	Silent	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10	28886519	35790581	23338402	56	5865											
LMTK3	114783	broad.mit.edu	37	chr19	49001926	49001926	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggctccctctggggaaaaAggggtctcggtctcgtagcc	14	11	3	0	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	LMTK3	NM_001080434	exon12	c.T2487C	p.P829P	GGAAAAAGGGGTC		53	3	0.06	63	1	0.0158730159		125		4	0	0				G	49001926	A	G	49001926	2	3	85	1	0	0	0	0	0	0	0	1	8900	59	3	4		4	LMTK3	19	49001926	Silent	SNP	A	TCGA-4K-AAAL-01A-11D-A435-10	13211345	49001926	10127057	57	5866											
SPACA4	171169	broad.mit.edu;mdanderson.org	37	chr19	49110410	49110410	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gggtcgccccgggcactggtCcggtcatcaacaaaggctgc	14	14	2	0	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	SPACA4	NM_133498	exon1	c.C175T	p.P59S	ACTGGTCCGGTCA		46	4	0.09	51	0	0		9		0	0					T	49110410	C	T	49110410	3	4	85	1	0	0	0	0	1	0	0	0	15027	855	30	3	177	3	SPACA4	19	49110410	Missense_Mutation	SNP	C	TCGA-4K-AAAL-01A-11D-A435-10	108484	49110410	10018573	58	5867											
TULP2	7288	mdanderson.org	37	chr19	49399726	49399726	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctcccgcagacaagagcGccaaagccacggggaagcgt	12	15	0	2	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_003323	exon4	c.C172T	p.R58C	AAGAGCGCCAAAG		48	3	0.06	56	0	0				0	0					A	49399726	G	A	49399726	3	1	85	1	0	0	0	0	1	0	0	0	16835	1087	38	1	1430	1	TULP2	19	49399726	Missense_Mutation	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10	289316	49399726	9729257	59	5868											
POLD1	5424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	50918215	50918215	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cccctcgtggccaacctggtCactgcctcactgcgccgcct	9	20	2	0	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_002691	exon20	c.C2532T	p.V844V	CCTGGTCACTGCC		44	6	0.14	42	0	0				120	14	0.12				T	50918215	C	T	50918215	2	4	85	1	0	0	0	0	0	0	0	1	12237	813	29	3		3	POLD1	19	50918215	Silent	SNP	C	TCGA-4K-AAAL-01A-11D-A435-10	1518489	50918215	8210768	60	5869											
ZNF343	79175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	2464083	2464083	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcgtcctctggtgtctgatGagatttgacttctggctaaa	11	8	3	3	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_024325	exon6	c.C1524T	p.L508L	TCTGATGAGATTT		127	21	0.17	101	0	0				13	0	0				A	2464083	G	A	2464083	2	1	85	1	0	0	0	0	0	0	0	1	17914	1277	45	3		3	ZNF343	20	2464083	Silent	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10		2464083	60561437	61	5870											
DUSP15	128853	ucsc.edu	37	chr20	30454893	30454893	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cctgcagcagaggctggggtGactcatggatagagatgatg	16	7	1	4	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	DUSP15	NM_080611	exon3	c.C119A	p.S40X	TGGGGTGACTCAT		38	4	0.11	39	0	0		28		26	0	0				T	30454893	G	T	30454893	3	4	85	1	0	0	0	0	1	0	0	0	4841	1294	45	3	608	3	DUSP15	20	30454893	Missense_Mutation	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10	27990810	30454893	32570627	62	5871											
MYH7B	57644	mdanderson.org	37	chr20	33589862	33589862	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggccaacaagctgcgggcaCggacccgggacgccctgggc	16	15	0	0	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_020884	exon44	c.C5914T	p.R1972W	CGGGCACGGACCC		46	3	0.07	43	0	0				9	0	0				T	33589862	C	T	33589862	3	4	85	1	0	0	0	0	1	0	0	0	10087	527	19	1	6080	1	MYH7B	20	33589862	Missense_Mutation	SNP	C	TCGA-4K-AAAL-01A-11D-A435-10	3134969	33589862	29435658	63	5872											
LAMA5	3911	mdanderson.org	37	chr20	60893995	60893995	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccgctccacctcggccaGtgtccggagcagctgctcac	11	18	1	0	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_005560	exon52	c.C6946A	p.L2316M	CGGCCAGTGTCCG		29	3	0.1	37	0	0				16	0	0				T	60893995	G	T	60893995	3	4	85	1	0	0	0	0	1	0	0	0	8647	1020	36	3	4257	3	LAMA5	20	60893995	Missense_Mutation	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10	27304133	60893995	2131525	64	5873											
KRTAP10-6	386674	ucsc.edu	37	chr21	46011987	46011987	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agaatccccacagcagacggAcacacagcacacaggcttgc	9	15	0	2	rs201334923	bycluster	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	KRTAP10-6	NM_198688	exon1	c.T379C	p.S127P	AGACGGACACACA		72	28	0.39	74	20	0.2702702703		57		0	0					G	46011987	A	G	46011987	3	3	85	1	0	0	0	0	1	0	0	0	8555	275	10	4	722	4	KRTAP10-6	21	46011987	Missense_Mutation	SNP	A	TCGA-4K-AAAL-01A-11D-A435-10		46011987	2117908	65	5874											
PLXNB2	23654	mdanderson.org	37	chr22	50727515	50727515	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcctctgagcccgtcgcgGctgcccagcgggtagggcag	17	14	1	1	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_012401	exon4	c.C1125T	p.S375S	GTCGCGGCTGCCC		31	3	0.1	30	0	0				3	0	0				A	50727515	G	A	50727515	2	1	85	1	0	0	0	0	0	0	0	1	12171	1194	42	2		2	PLXNB2	22	50727515	Silent	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10		50727515	577051	66	5875											
AR	367	hgsc.bcm.edu;broad.mit.edu	37	chrX	66766356	66766356	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtggtggtggtgggggtggTggcggcggcggcggcggcgg	28	6	0	0	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_000044	exon1	c.T1368C	p.G456G	GGGTGGTGGCGGC		21	4	0.19	9	0	0				0	0					C	66766356	T	C	66766356	2	2	85	1	0	0	0	0	0	0	0	1	833	1683	59	4		4	AR	23	66766356	Silent	SNP	T	TCGA-4K-AAAL-01A-11D-A435-10		66766356	88504204	67	5876											
MAGEC1	9947	broad.mit.edu	37	chrX	140994163	140994163	+	Nonsense_Mutation	SNP	A	A	T													ttttccagagttcccctgagAgaactcacagtacttttgag					novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	MAGEC1	NM_005462	exon4	c.A973T	p.R325X	CCTGAGAGAACTC		174	4	0.02	109	0	0		317		0	0					T	140994163	A	T	140994163	4	4	85	1	0	0	0	0	0	1	0	0	9229	296	11	5	979	5	MAGEC1	23	140994163	Nonsense_Mutation	SNP	A	TCGA-4K-AAAL-01A-11D-A435-10	74227807	140994163	14276397	68	5877	16	2									
MAGEC1	9947	broad.mit.edu	37	chrX	140994165	140994165	+	Missense_Mutation	SNP	A	A	T													ttccagagttcccctgagagAactcacagtacttttgaggg					novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	MAGEC1	NM_005462	exon4	c.A975T	p.R325S	TGAGAGAACTCAC		181	5	0.03	112	1	0.0089285714		317		0	0					T	140994165	A	T	140994165	3	4	85	1	0	0	0	0	1	0	0	0	9229	243	9	5	981	5	MAGEC1	23	140994165	Missense_Mutation	SNP	A	TCGA-4K-AAAL-01A-11D-A435-10	2	140994165	14276395	69	5878	16	2									
MAGEA11	4110	mdanderson.org	37	chrX	148794834	148794834	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	tgagggatggagactcagttCcgcagagggggtctggggtg	20	6	2	3	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_005366	exon2	c.C15A	p.F5L	TCAGTTCCGCAGA		34	3	0.09	34	0	0				2	0	0				A	148794834	C	A	148794834	3	1	85	1	0	0	0	0	1	0	0	0	9210	854	30	3	30	3	MAGEA11	23	148794834	Missense_Mutation	SNP	C	TCGA-4K-AAAL-01A-11D-A435-10	7800669	148794834	6475726	70	5879											
HMGB3	3149	mdanderson.org	37	chrX	150156360	150156360	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagaggaggaggaagaagaGgaggaggaggaggaggagga	24	0	0	3	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_005342	exon5	c.G576A	p.E192E	AGAAGAGGAGGAG		21	2	0.1	9	0	0				91	4	0.04				A	150156360	G	A	150156360	2	1	85	1	0	0	0	0	0	0	0	1	7267	991	35	3		3	HMGB3	23	150156360	Silent	SNP	G	TCGA-4K-AAAL-01A-11D-A435-10	1361526	150156360	5114200	71	5880											
BCAN	63827	mdanderson.org	37	chr1	156617454	156617454	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcaatgtgatgctggctgGctgtcggatcagaccgtgag	16	8	1	3	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_021948	exon4	c.G621A	p.W207X	TGGCTGGCTGTCG		50	3	0.06	44	0	0				3	0	0				A	156617454	G	A	156617454	4	1	86	1	0	0	0	0	0	1	0	0	1343	1212	42	2	631	2	BCAN	1	156617454	Nonsense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10		156617454	92633167	1	5881											
ADAM17	6868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	9661415	9661415	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagtgcttttcaccaggttTtacctcttgtggagacttga	10	8	2	2	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_003183	exon8	c.A874C	p.K292Q	CAGGTTTTACCTC		141	41	0.29	121	0	0				73	29	0.4				G	9661415	T	G	9661415	3	3	86	1	0	0	0	0	1	0	0	0	237	1850	64	4	1648	4	ADAM17	2	9661415	Missense_Mutation	SNP	T	TCGA-S6-A8JW-01A-11D-A435-10		9661415	233537958	2	5882											
LPIN1	23175	broad.mit.edu	37	chr2	11935590	11935590	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catagcaccggagagcaaccGccgcagctcagcttggccac	11	16	1	1	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	LPIN1	NM_001261428	exon15	c.G2010T	p.P670P	GCAACCGCCGCAG		250	6	0.02	294	0	0		99		83	0	0				T	11935590	G	T	11935590	2	4	86	1	0	0	0	0	0	0	0	1	8962	1074	38	1		1	LPIN1	2	11935590	Silent	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10	2274175	11935590	231263783	3	5883											
CAD	790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	27455982	27455982	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	actatgacatgtgtgatcgaCtctactttgatgagatctct	8	8	2	4	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_004341	exon19	c.C2965G	p.L989V	GATCGACTCTACT		98	27	0.28	97	0	0				165	61	0.37				G	27455982	C	G	27455982	3	3	86	1	0	0	0	0	1	0	0	0	2583	565	20	5	3039	5	CAD	2	27455982	Missense_Mutation	SNP	C	TCGA-S6-A8JW-01A-11D-A435-10	15520392	27455982	215743391	4	5884											
MST1R	4486	mdanderson.org	37	chr3	49940406	49940406	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgatagacactgagcgtgGgctgaagctggcagccacgg	15	11	0	4	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_001244937	exon1	c.C637A	p.P213T	AGCGTGGGCTGAA		32	3	0.09	49	0	0				21	0	0				T	49940406	G	T	49940406	3	4	86	1	0	0	0	0	1	0	0	0	9938	1232	43	3	3645	3	MST1R	3	49940406	Missense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10		49940406	148082024	5	5885											
HYAL2	8692	bcgsc.ca	37	chr3	50357082	50357082	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catggttggcatggtgggtgCgagccacacgaagggcctcc	16	11	0	0	rs367865916		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	HYAL2	NM_033158	exon3	c.G839A	p.R280H	TGGGTGCGAGCCA		50	4	0.08	76	0	0		31		267	1	0				T	50357082	C	T	50357082	3	4	86	1	0	0	0	0	1	0	0	0	7507	768	27	1	594	1	HYAL2	3	50357082	Missense_Mutation	SNP	C	TCGA-S6-A8JW-01A-11D-A435-10	416676	50357082	147665348	6	5886											
MRPL3	11222	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	131220418	131220419	+	Frame_Shift_Del	DEL	AC	AC	-													catggttcatctttcagaggAcacagtttacttgctaattg					novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	AC	AC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	MRPL3	NM_007208	exon2	c.234_235del	p.78_79del	CAGAGGACACAGT		184	47	0.26	212	0	0		32		192	0	0				-	131220419	AC	-	131220418	7	5	86	1	0	1	0	1	0	0	0	0	9841	273	10	0	848	0	MRPL3	3	131220418	Frame_Shift_Del	DEL	AC	TCGA-S6-A8JW-01A-11D-A435-10	80863336	131220418	66802012	7	5887											
HERC6	55008	hgsc.bcm.edu	37	chr4	89304513	89304513	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tggggattggagaattcaagGaaataagtttcacacctaag	11	5	2	1	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	HERC6_ENST00000264346,NS,carcinoma,0,2	HERC6_ENST00000264346	NM_017912	exon2	c.G340T	p.E114X	TTCAAGGAAATAA		80	4	0.05	109	0	0		0	2	31	0	0				T	89304513	G	T	89304513	4	4	86	1	0	0	0	0	0	1	0	0	7102	1175	41	3	143	3	HERC6	4	89304513	Nonsense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10		89304513	101849763	8	5888											
ENPEP	2028	mdanderson.org	37	chr4	111397903	111397903	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgtgaagcccctgttggaGgaggacacctacacgggcac	13	13	0	1	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_001977	exon1	c.G333T	p.E111D	GTTGGAGGAGGAC		49	3	0.06	75	0	0				12	0	0				T	111397903	G	T	111397903	3	4	86	1	0	0	0	0	1	0	0	0	5156	991	35	3	335	3	ENPEP	4	111397903	Missense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10	22093390	111397903	79756373	9	5889											
CDH18	1016	broad.mit.edu	37	chr5	19838939	19838939	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgattccatacccatccccTtttgggacgatgatggactt	8	12	0	2	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	CDH18	NM_001167667	exon3	c.A157G	p.R53G	ATCCCCTTTTGGG		73	3	0.04	96	0	0		561		2	0	0				C	19838939	T	C	19838939	3	2	86	1	0	0	0	0	1	0	0	0	3125	1608	56	4	2259	4	CDH18	5	19838939	Missense_Mutation	SNP	T	TCGA-S6-A8JW-01A-11D-A435-10		19838939	161076321	10	5890											
PHF3	23469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr6	64423074	64423074	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgttgttcatctcccaggtCagccacagcgtatgatgggt	11	11	3	1	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_015153	exon15	c.C5590T	p.Q1864X	CCAGGTCAGCCAC		71	14	0.2	83	0	0				117	32	0.27				T	64423074	C	T	64423074	4	4	86	1	0	0	0	0	0	1	0	0	11883	827	29	3	5648	3	PHF3	6	64423074	Nonsense_Mutation	SNP	C	TCGA-S6-A8JW-01A-11D-A435-10		64423074	106691993	11	5891											
PRKAR2B	5577	mdanderson.org	37	chr7	106685519	106685519	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcttcggccatgagggcaGgacctggggggacctgggcg	20	11	0	1	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_002736	exon1	c.G167T	p.R56M	AGGGCAGGACCTG		13	2	0.15	9	0	0				52	0	0				T	106685519	G	T	106685519	3	4	86	1	0	0	0	0	1	0	0	0	12557	1000	35	3	169	3	PRKAR2B	7	106685519	Missense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10		106685519	52453144	12	5892											
MOS	4342	bcgsc.ca;mdanderson.org	37	chr8	57025695	57025695	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcgtacagtatgtgctgccGctcccccgaatacggcgcct	11	16	0	0	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	MOS	NM_005372	exon1	c.C847T	p.R283W	GCTGCCGCTCCCC		87	5	0.06	106	0	0		63		0	0					A	57025695	G	A	57025695	3	1	86	1	0	0	0	0	1	0	0	0	9760	1086	38	1	196	1	MOS	8	57025695	Missense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10		57025695	89338327	13	5893											
KIAA1429	25962	ucsc.edu	37	chr8	95538916	95538916	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgcctacctcttaaaaaaGcttccattccttctgtcata	3	13	4	0	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	KIAA1429	NM_015496	exon8	c.C1556T	p.A519V	AAAAAAGCTTCCA		86	1	0.01	86	0	0		176		94	11	0.12				A	95538916	G	A	95538916	3	1	86	1	0	0	0	0	1	0	0	0	8272	971	34	2	4004	2	KIAA1429	8	95538916	Missense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10	38513221	95538916	50825106	14	5894											
PHF2	5253	mdanderson.org	37	chr9	96438062	96438062	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggctgctgcagctaagttGtcccagcaggtgaggagggg	18	9	0	1	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_005392	exon20	c.G2823T	p.L941F	TAAGTTGTCCCAG		20	2	0.1	28	0	0				75	0	0				T	96438062	G	T	96438062	3	4	86	1	0	0	0	0	1	0	0	0	11877	1368	48	3	2901	3	PHF2	9	96438062	Missense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10		96438062	44775369	15	5895											
DNAJC1	64215	mdanderson.org	37	chr10	22292356	22292356	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgccggctgggagcaaggaGccgtcatcgcgctgggctcg	18	13	1	0	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_022365	exon1	c.C8A	p.A3D	CAAGGAGCCGTCA		11	2	0.18	17	0	0				2	0	0				T	22292356	G	T	22292356	3	4	86	1	0	0	0	0	1	0	0	0	4655	971	34	2	1704	2	DNAJC1	10	22292356	Missense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10		22292356	113242391	16	5896											
CDH23	64072	mdanderson.org	37	chr10	73558990	73558990	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccctgtctacctggaaatcGtggacatcaatgacaacaac	7	12	2	1	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	CDH23,rectum,carcinoma,-2,1	CDH23	NM_022124	exon49	c.G7177A	p.V2393M	GAAATCGTGGACA		45	3	0.07	93	0	0		-2	1	0	0					A	73558990	G	A	73558990	3	1	86	1	0	0	0	0	1	0	0	0	3130	1145	40	1	7720	1	CDH23	10	73558990	Missense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10	51266634	73558990	61975757	17	5897											
USP54	159195	mdanderson.org	37	chr10	75276934	75276934	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaggatcaggacagtgaaGcacaaatgaagaagcaacag	11	8	1	3	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_152586	exon18	c.C3250A	p.L1084I	AGTGAAGCACAAA		46	3	0.07	65	0	0				72	0	0				T	75276934	G	T	75276934	3	4	86	1	0	0	0	0	1	0	0	0	17144	971	34	2	1824	2	USP54	10	75276934	Missense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10	1717944	75276934	60257813	18	5898											
SLIT1	6585	mdanderson.org	37	chr10	98781159	98781159	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcacagtatagggggttgGcaccaatggccctgagcaga	14	9	1	2	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_003061	exon26	c.C2594T	p.A865V	GGGTTGGCACCAA		82	4	0.05	102	1	0.0098039216				0	0					A	98781159	G	A	98781159	3	1	86	1	0	0	0	0	1	0	0	0	14792	1203	42	2	2058	2	SLIT1	10	98781159	Missense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10	23504225	98781159	36753588	19	5899											
CPXM2	119587	mdanderson.org	37	chr10	125528156	125528156	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gccaagtactcctgacacacGaactgcaccagcagcagcag	9	15	0	1	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_198148	exon9	c.C1185A	p.F395L	ACACACGAACTGC		20	2	0.1	36	0	0				12	0	0				T	125528156	G	T	125528156	3	4	86	1	0	0	0	0	1	0	0	0	3861	1049	37	1	1109	1	CPXM2	10	125528156	Missense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10	26746997	125528156	10006591	20	5900											
MUC6	4588	mdanderson.org	37	chr11	1017211	1017211	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggatggaggcagaagtggCcatctgtgtgtgggtaggga	20	4	1	1	rs36128067		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_005961	exon31	c.G5590A	p.A1864T	AAGTGGCCATCTG		108	12	0.11	148	2	0.0135135135				0	0					T	1017211	C	T	1017211	3	4	86	1	0	0	0	0	1	0	0	0	10027	739	26	2	1741	2	MUC6	11	1017211	Missense_Mutation	SNP	C	TCGA-S6-A8JW-01A-11D-A435-10		1017211	133989305	21	5901											
OR52L1	338751	mdanderson.org	37	chr11	6007599	6007599	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcctatgatggtggcttGgcagaagataagttttccca	12	7	0	3	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_001005173	exon1	c.C562A	p.Q188K	TGGCTTGGCAGAA		53	3	0.06	67	0	0				0	0					T	6007599	G	T	6007599	3	4	86	1	0	0	0	0	1	0	0	0	11172	1357	47	3	431	3	OR52L1	11	6007599	Missense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10	4990388	6007599	128998917	22	5902											
DGKZ	8525	broad.mit.edu	37	chr11	46391504	46391504	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccagccaacctttgtacGgcaccactgggtacacagac	8	17	0	1	rs373801182	alternate_allele	TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	DGKZ	NM_001105540	exon7	c.G1079T	p.R360L	TTGTACGGCACCA		238	5	0.02	364	0	0		199		204	0	0				T	46391504	G	T	46391504	3	4	86	1	0	0	0	0	1	0	0	0	4502	1116	39	1	1548	1	DGKZ	11	46391504	Missense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10	40383905	46391504	88615012	23	5903											
VPS37C	55048	mdanderson.org	37	chr11	60901523	60901523	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctacccagctttgccttctGctcctggcaccgctccacga	7	19	1	0	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_017966	exon3	c.C250A	p.Q84K	CCTTCTGCTCCTG		39	3	0.08	56	0	0				120	0	0				T	60901523	G	T	60901523	3	4	86	1	0	0	0	0	1	0	0	0	17266	1328	46	2	829	2	VPS37C	11	60901523	Missense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10	14510019	60901523	74104993	24	5904											
EHBP1L1	254102	mdanderson.org	37	chr11	65350066	65350066	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaacagaggtgggggtcatAgagaccccagggacagagac	16	8	1	3	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_001099409	exon9	c.A1923G	p.I641M	GGTCATAGAGACC		32	3	0.09	49	0	0				40	0	0				G	65350066	A	G	65350066	3	3	86	1	0	0	0	0	1	0	0	0	5002	410	15	4	1957	4	EHBP1L1	11	65350066	Missense_Mutation	SNP	A	TCGA-S6-A8JW-01A-11D-A435-10	4448543	65350066	69656450	25	5905											
ALDH3B2	222	mdanderson.org	37	chr11	67434105	67434105	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtgggtagttccagggtgCgatgatgaggaccaggccaa	16	8	0	2	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	ALDH3B2,NS,carcinoma,0,1	ALDH3B2	NM_001031615	exon4	c.G91A	p.A31T	AGGGTGCGATGAT		48	3	0.06	61	0	0		0	1	0	0					T	67434105	C	T	67434105	3	4	86	1	0	0	0	0	1	0	0	0	497	768	27	1	1094	1	ALDH3B2	11	67434105	Missense_Mutation	SNP	C	TCGA-S6-A8JW-01A-11D-A435-10	2084039	67434105	67572411	26	5906											
ATM	472	mdanderson.org	37	chr11	108121539	108121539	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaccccaacagcgacatggGgaacgtacaccatatgtgtt	9	12	0	0	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	ATM_ENST00000278616,colon,carcinoma,+1,2	ATM_ENST00000278616	NM_000051	exon10	c.G1347T	p.G449G	ACATGGGGAACGT		24	3	0.13	53	0	0		1	2	11	0	0				T	108121539	G	T	108121539	2	4	86	1	0	0	0	0	0	0	0	1	1108	1219	43	3		3	ATM	11	108121539	Silent	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10	40687434	108121539	26884977	27	5907											
TBCEL	219899	mdanderson.org	37	chr11	120925820	120925820	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtcttgtccttctatttGctgtcattctcttaagctac	6	10	4	0	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_001130047	exon5	c.G515T	p.C172F	CTATTTGCTGTCA		51	4	0.08	99	0	0				24	0	0				T	120925820	G	T	120925820	3	4	86	1	0	0	0	0	1	0	0	0	15694	1319	46	2	529	2	TBCEL	11	120925820	Missense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10	12804281	120925820	14080696	28	5908											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	25380276	25380276	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcattgcactgtactcctctTgacctgctgtgtcgagaata	8	11	2	2	rs121913240	bycluster	TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	KRAS_ENST00000256078,colon,carcinoma,+1,429	KRAS_ENST00000256078	NM_004985	exon3	c.A182G	p.Q61R	TCCTCTTGACCTG		185	55	0.3	107	0	0		1	429	142	33	0.23				C	25380276	T	C	25380276	3	2	86	1	0	0	0	0	1	0	0	0	8480	1812	63	4	520	4	KRAS	12	25380276	Missense_Mutation	SNP	T	TCGA-S6-A8JW-01A-11D-A435-10		25380276	108471619	29	5909											
KRT79	338785	broad.mit.edu	37	chr12	53217693	53217693	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttcttggctgcatcagccTccccctgcagcctctggata	9	16	3	0	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	KRT79	NM_175834	exon6	c.A1124G	p.E375G	TCAGCCTCCCCCT		69	3	0.04	62	0	0		78		0	0					C	53217693	T	C	53217693	3	2	86	1	0	0	0	0	1	0	0	0	8534	1551	54	4	499	4	KRT79	12	53217693	Missense_Mutation	SNP	T	TCGA-S6-A8JW-01A-11D-A435-10	27837417	53217693	80634202	30	5910											
COL4A1	1282	mdanderson.org	37	chr13	110835421	110835421	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcaggcctggccttcctgGggttccgggaaagcctcggt	16	12	0	0	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_001845	exon28	c.C2014A	p.P672T	TTCCTGGGGTTCC		54	3	0.06	77	0	0				492	0	0				T	110835421	G	T	110835421	3	4	86	1	0	0	0	0	1	0	0	0	3712	1232	43	3	3095	3	COL4A1	13	110835421	Missense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10		110835421	4334457	31	5911											
PIGH	5283	mdanderson.org	37	chr14	68066816	68066816	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgagcgaacgcagcgagagCcgagggcagctgaggcagaa	18	9	0	4	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_004569	exon1	c.G105A	p.R35R	CGAGAGCCGAGGG		61	4	0.07	50	0	0				41	0	0				T	68066816	C	T	68066816	2	4	86	1	0	0	0	0	0	0	0	1	11936	726	26	2		2	PIGH	14	68066816	Silent	SNP	C	TCGA-S6-A8JW-01A-11D-A435-10		68066816	39282724	32	5912											
C15orf60	283677	mdanderson.org	37	chr15	73735668	73735668	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctggaagctgggacagccCcctgccccacatggaaggtg	14	14	0	0	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_001042367	exon1	c.C142T	p.P48S	ACAGCCCCCTGCC		23	3	0.13	20	0	0				0	0					T	73735668	C	T	73735668	3	4	86	1	0	0	0	0	1	0	0	0	1814	623	22	3	144	3	C15orf60	15	73735668	Missense_Mutation	SNP	C	TCGA-S6-A8JW-01A-11D-A435-10		73735668	28795724	33	5913											
ZNF592	9640	mdanderson.org	37	chr15	85341275	85341275	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagccccacagaccctccCagtgagtgcagctccagggc	10	19	0	2	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_014630	exon6	c.C2575A	p.Q859K	CCCTCCCAGTGAG		43	3	0.07	43	0	0				50	0	0				A	85341275	C	A	85341275	3	1	86	1	0	0	0	0	1	0	0	0	18078	608	21	3	2585	3	ZNF592	15	85341275	Missense_Mutation	SNP	C	TCGA-S6-A8JW-01A-11D-A435-10	11605607	85341275	17190117	34	5914											
MAPK8IP3	23162	mdanderson.org	37	chr16	1812424	1812424	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgctcatggagcggaacCagtacaaggagcggctgatg	16	8	1	1	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_015133	exon14	c.C1609A	p.Q537K	CGGAACCAGTACA		51	3	0.06	42	0	0				13	0	0				A	1812424	C	A	1812424	3	1	86	1	0	0	0	0	1	0	0	0	9335	595	21	3	1679	3	MAPK8IP3	16	1812424	Missense_Mutation	SNP	C	TCGA-S6-A8JW-01A-11D-A435-10		1812424	88542329	35	5915											
CLN3	1201	mdanderson.org	37	chr16	28495343	28495343	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacctggcttcgactccggGgcctcggttcttatgagggg	14	12	1	1	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_001042432	exon10	c.C774A	p.A258A	CTCCGGGGCCTCG		48	3	0.06	67	0	0				105	0	0				T	28495343	G	T	28495343	2	4	86	1	0	0	0	0	0	0	0	1	3566	1219	43	3		3	CLN3	16	28495343	Silent	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10	26682919	28495343	61859410	36	5916											
ITGAX	3687	mdanderson.org	37	chr16	31371771	31371771	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgcagcaggcatcatccGctatgcaattggggtagggc	14	9	1	1	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	ITGAX,NS,carcinoma,0,2	ITGAX	NM_000887	exon8	c.G848T	p.R283L	TCATCCGCTATGC		49	3	0.06	47	0	0		0	2	8	0	0				T	31371771	G	T	31371771	3	4	86	1	0	0	0	0	1	0	0	0	7932	1087	38	1	878	1	ITGAX	16	31371771	Missense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10	2876428	31371771	58982982	37	5917											
ARHGEF15	22899	mdanderson.org	37	chr17	8215854	8215854	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtgctgaaggccgggctcAggatgcagatgccccggagc	18	11	1	2	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_025014	exon2	c.A497G	p.Q166R	GGGCTCAGGATGC		39	3	0.08	32	0	0				24	0	0				G	8215854	A	G	8215854	3	3	86	1	0	0	0	0	1	0	0	0	895	188	7	4	499	4	ARHGEF15	17	8215854	Missense_Mutation	SNP	A	TCGA-S6-A8JW-01A-11D-A435-10		8215854	72979356	38	5918											
MYH2	4620	mdanderson.org	37	chr17	10428649	10428649	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccttctgcaatctgttccgtGaggtcagaaatctcctctgt	8	12	5	2	rs375114012	alternate_allele	TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_001100112	exon33	c.C4554A	p.L1518L	TTCCGTGAGGTCA		77	4	0.05	83	0	0				0	0					T	10428649	G	T	10428649	2	4	86	1	0	0	0	0	0	0	0	1	10082	1277	45	3		3	MYH2	17	10428649	Silent	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10	2212795	10428649	70766561	39	5919											
GPR179	440435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	36485919	36485921	+	In_Frame_Del	DEL	TCT	TCT	-													gggtcatcctcctgcctctgTcttcttgttccctgctgccc					novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	TCT	TCT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	GPR179	NM_001004334	exon11	c.3532_3534del	p.1178_1178del	CCTCTGTCTTCTT		86	12	0.14	123	0	0		170		0	0					-	36485921	TCT	-	36485919	7	5	86	1	0	1	0	1	0	0	0	0	6713	1667	58	0	3574	0	GPR179	17	36485919	In_Frame_Del	DEL	TCT	TCGA-S6-A8JW-01A-11D-A435-10	26057270	36485919	44709291	40	5920											
KRT32	3882	mdanderson.org	37	chr17	39623426	39623426	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccggaaggtggtgggcaggCagaccgaaggcaggcatgcc	19	10	0	1	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_002278	exon1	c.G152A	p.C51Y	GGCAGGCAGACCG		49	3	0.06	57	0	0				0	0					T	39623426	C	T	39623426	3	4	86	1	0	0	0	0	1	0	0	0	8510	710	25	2	1222	2	KRT32	17	39623426	Missense_Mutation	SNP	C	TCGA-S6-A8JW-01A-11D-A435-10	3137507	39623426	41571784	41	5921											
LSM12	124801	broad.mit.edu	37	chr17	42143886	42143886	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taccacctcgccctgcagccGctgctcctggcacgtccggc	10	20	0	0	rs374081346	alternate_allele	TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	LSM12	NM_152344	exon2	c.C70T	p.R24W	GCAGCCGCTGCTC		165	6	0.04	168	1	0.005952381		16		44	0	0				A	42143886	G	A	42143886	3	1	86	1	0	0	0	0	1	0	0	0	9097	1086	38	1	537	1	LSM12	17	42143886	Missense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10	2520460	42143886	39051324	42	5922											
VPS4B	9525	mdanderson.org	37	chr18	61077568	61077568	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtccttctttcactggcttcTgtgcttttttctctttattt	5	10	4	0	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_004869	exon3	c.A251T	p.Q84L	GGCTTCTGTGCTT		48	3	0.06	81	0	0				48	0	0				A	61077568	T	A	61077568	3	1	86	1	0	0	0	0	1	0	0	0	17272	1580	55	5	1119	5	VPS4B	18	61077568	Missense_Mutation	SNP	T	TCGA-S6-A8JW-01A-11D-A435-10		61077568	16999680	43	5923											
CYP4F8	11283	broad.mit.edu	37	chr19	15726757	15726758	+	RNA	INS	-	-	GA													gatcactcactcattcctctINStcccactcattcctctcctc					novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	CYP4F8	.	.	.	.	TTCCTCTTCCCAC		19	7	0.37	12	0	0		64		0	0					GA	15726758	-	GA	15726757	6	5	86	0	1	1	1	0	0	0	0	0	4214	1624	56	0		0	CYP4F8	19	15726757	RNA	INS	-	TCGA-S6-A8JW-01A-11D-A435-10		15726757	43402226	44	5924	17	3									
CYP4F8	11283	broad.mit.edu	37	chr19	15726759	15726760	+	RNA	INS	-	-	A													tcactcactcattcctcttcINSccactcattcctctcctcac					novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	CYP4F8	.	.	.	.	CCTCTTCCCACTC		18	7	0.39	12	0	0		64		0	0					A	15726760	-	A	15726759	6	5	86	0	1	1	1	0	0	0	0	0	4214	870	30	0		0	CYP4F8	19	15726759	RNA	INS	-	TCGA-S6-A8JW-01A-11D-A435-10	2	15726759	43402224	45	5925	17	3									
CYP4F8	11283	broad.mit.edu	37	chr19	15726760	15726761	+	RNA	INS	-	-	T													cactcactcattcctcttccINScactcattcctctcctcact					novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	CYP4F8	.	.	.	.	CTCTTCCCACTCA		17	7	0.41	12	0	0		64		0	0					T	15726761	-	T	15726760	6	5	86	0	1	1	1	0	0	0	0	0	4214	638	22	0		0	CYP4F8	19	15726760	RNA	INS	-	TCGA-S6-A8JW-01A-11D-A435-10	1	15726760	43402223	46	5926	17	3									
ZNF296	162979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	45575017	45575017	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gttgagcttactgctctgggCgcaggcgtagttgcagaact	14	9	1	2	rs368413069	alternate_allele	TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_145288	exon3	c.G1270C	p.A424P	TCTGGGCGCAGGC		47	11	0.23	49	0	0				86	22	0.26				G	45575017	C	G	45575017	3	3	86	1	0	0	0	0	1	0	0	0	17884	768	27	5	161	5	ZNF296	19	45575017	Missense_Mutation	SNP	C	TCGA-S6-A8JW-01A-11D-A435-10	29848257	45575017	13553966	47	5927											
CD3EAP	10849	mdanderson.org	37	chr19	45911458	45911458	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaaattggcaggcaagcggCaccgctatcgagtcctcagc	12	13	1	0	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_012099	exon3	c.C232T	p.H78Y	AAGCGGCACCGCT		41	3	0.07	43	0	0				102	1	0.01				T	45911458	C	T	45911458	3	4	86	1	0	0	0	0	1	0	0	0	3034	710	25	2	242	2	CD3EAP	19	45911458	Missense_Mutation	SNP	C	TCGA-S6-A8JW-01A-11D-A435-10	336441	45911458	13217525	48	5928											
TULP2	7288	mdanderson.org	37	chr19	49398749	49398749	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cactttcttccggaggaaagGgttcccaaggcctgggagaa	13	10	1	1	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_003323	exon5	c.C223A	p.P75T	GGAAAGGGTTCCC		45	3	0.07	37	0	0				5	0	0				T	49398749	G	T	49398749	3	4	86	1	0	0	0	0	1	0	0	0	16835	1232	43	3	1375	3	TULP2	19	49398749	Missense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10	3487291	49398749	9730234	49	5929											
SCAF1	58506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	50149824	50149824	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agcttcctcgcagggctggtGagtgtcctggatcccccgga	14	13	0	1	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_021228	exon5	c.G303A	p.V101V	GCTGGTGAGTGTC		55	13	0.24	63	0	0				118	11	0.09				A	50149824	G	A	50149824	2	1	86	1	0	0	0	0	0	0	0	1	13920	1277	45	3		3	SCAF1	19	50149824	Silent	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10	751075	50149824	8979159	50	5930											
GFRA4	64096	mdanderson.org	37	chr20	3644039	3644039	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagcgcaggccccaggcagCggaccatgctggaccttcaa	13	15	1	0	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_145762	exon1	c.G8A	p.R3H	AGGCAGCGGACCA		31	3	0.1	33	0	0				0	0					T	3644039	C	T	3644039	3	4	86	1	0	0	0	0	1	0	0	0	6391	768	27	1	911	1	GFRA4	20	3644039	Missense_Mutation	SNP	C	TCGA-S6-A8JW-01A-11D-A435-10		3644039	59381481	51	5931											
DTD1	92675	mdanderson.org	37	chr20	18724893	18724893	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcctctgaacgggagccGtagctcaggaggcagaattc	14	10	2	2	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	DTD1,caecum,carcinoma,+2,2	DTD1	NM_080820	exon5	c.G627A	p.P209P	GGAGCCGTAGCTC		40	3	0.08	40	0	0		2	2	82	0	0				A	18724893	G	A	18724893	2	1	86	1	0	0	0	0	0	0	0	1	4812	1132	40	1		1	DTD1	20	18724893	Silent	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10	15080854	18724893	44300627	52	5932											
CLDN14	23562	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr21	37833709	37833709	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcccgatgacggcgcaggcGcaggctatgcccgagagcag	15	13	0	2	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	CLDN14,NS,carcinoma,0,1	CLDN14	NM_144492	exon3	c.C285T	p.C95C	GCAGGCGCAGGCT		63	5	0.08	49	1	0.0204081633		0	1	0	0					A	37833709	G	A	37833709	2	1	86	1	0	0	0	0	0	0	0	1	3498	1079	38	1		1	CLDN14	21	37833709	Silent	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10		37833709	10296186	53	5933											
PIK3IP1	113791	broad.mit.edu	37	chr22	31685584	31685584	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcctcactccgagcgggcaGggcgttggcaggagcgaaca	16	13	1	0	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	PIK3IP1	NM_001135911	exon4	c.C409A	p.L137M	CGGGCAGGGCGTT		95	4	0.04	79	0	0		20		24	0	0				T	31685584	G	T	31685584	3	4	86	1	0	0	0	0	1	0	0	0	11964	991	35	3	394	3	PIK3IP1	22	31685584	Missense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10		31685584	19618982	54	5934											
IL2RB	3560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	37540125	37540125	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagatgtcagggtcctcacCattcaccgctgcagatgccc	9	15	4	2	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_000878	exon2	c.G88A	p.G30S	CCTCACCATTCAC		131	45	0.34	108	0	0				63	2	0.03				T	37540125	C	T	37540125	3	4	86	1	0	0	0	0	1	0	0	0	7730	608	21	3	1603	3	IL2RB	22	37540125	Missense_Mutation	SNP	C	TCGA-S6-A8JW-01A-11D-A435-10	5854541	37540125	13764441	55	5935											
SYTL5	94122	mdanderson.org	37	chrX	37966002	37966002	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gaaatctggccataggagatGaaaagaaacagaggacagat	12	5	1	5	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_001163334	exon11	c.G1378T	p.E460X	GGAGATGAAAAGA		113	5	0.04	91	0	0				56	0	0				T	37966002	G	T	37966002	4	4	86	1	0	0	0	0	0	1	0	0	15542	1291	45	3	1420	3	SYTL5	23	37966002	Nonsense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10		37966002	117304558	56	5936											
ARHGAP4	393	mdanderson.org	37	chrX	153173197	153173197	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacctcagtgtggcttggGggtcgtgtctaggccctggg	18	10	2	0	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_001164741	exon23	c.C2947A	p.P983T	GCTTGGGGGTCGT		32	3	0.09	37	0	0				104	0	0				T	153173197	G	T	153173197	3	4	86	1	0	0	0	0	1	0	0	0	882	1232	43	3	17	3	ARHGAP4	23	153173197	Missense_Mutation	SNP	G	TCGA-S6-A8JW-01A-11D-A435-10	115207195	153173197	2097363	57	5937											
CDA	978	mdanderson.org	37	chr1	20931514	20931514	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagggtacaaggatttcaGggcaattgctatcgccaggt	13	7	1	1	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_001785	exon2	c.G248T	p.R83M	ATTTCAGGGCAAT		55	3	0.05	52	0	0				45	0	0				T	20931514	G	T	20931514	3	4	87	1	0	0	0	0	1	0	0	0	3074	1000	35	3	254	3	CDA	1	20931514	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10		20931514	228319107	1	5938											
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	21205927	21205927	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agccgctcctctgtgtcaacAgtaagtcctgacacttgctt	8	13	2	1	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_001198801	exon18	c.T2451C	p.T817T	GTCAACAGTAAGT		106	33	0.31	110	0	0				61	25	0.41				G	21205927	A	G	21205927	2	3	87	1	0	0	0	0	0	0	0	1	5066	175	7	4		4	EIF4G3	1	21205927	Silent	SNP	A	TCGA-S6-A8JX-01A-11D-A435-10	274413	21205927	228044694	2	5939											
CSMD2	114784	ucsc.edu;bcgsc.ca	37	chr1	34192157	34192157	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcacaagcacctgtcgaagGtgattttgatggggtagcct	13	8	1	2	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	CSMD2	NM_052896	exon16	c.C2378A	p.T793N	TCGAAGGTGATTT		32	4	0.13	47	0	0		946		6	0	0				T	34192157	G	T	34192157	3	4	87	1	0	0	0	0	1	0	0	0	3970	1261	44	3	8301	3	CSMD2	1	34192157	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	12986230	34192157	215058464	3	5940											
LRRN2	10446	hgsc.bcm.edu;bcgsc.ca	37	chr1	204587180	204587181	+	Frame_Shift_Ins	INS	-	-	A													ggcctgtgccaaggtgggccINSgctagcccagctgccaggag					novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	LRRN2	NM_006338	exon3	c.1941_1942insT	p.A647fs	GTGGGCCGCTAGC		59	10	0.17	66	0	0		81		3	0	0				A	204587181	-	A	204587180	7	5	87	1	0	1	1	0	0	0	0	0	9079	639	23	0	204	0	LRRN2	1	204587180	Frame_Shift_Ins	INS	-	TCGA-S6-A8JX-01A-11D-A435-10	170395023	204587180	44663441	4	5941											
USH2A	7399	mdanderson.org	37	chr1	215814071	215814071	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cgaaaatggggctcggtactGaggcactgtggggagaaagt	17	6	0	2	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_206933	exon68	c.C14797A	p.Q4933K	GGTACTGAGGCAC		49	3	0.06	65	0	0				0	0					T	215814071	G	T	215814071	3	4	87	1	0	0	0	0	1	0	0	0	17095	1299	45	3	831	3	USH2A	1	215814071	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	11226891	215814071	33436550	5	5942											
TTC13	79573	mdanderson.org	37	chr1	231075185	231075185	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtatagcatagctatagGctggtttttgttcagttcta	9	5	2	0	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_024525	exon8	c.C847A	p.P283T	CTATAGGCTGGTT		37	3	0.08	37	0	0				6	0	0				T	231075185	G	T	231075185	3	4	87	1	0	0	0	0	1	0	0	0	16741	1203	42	2	1799	2	TTC13	1	231075185	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	15261114	231075185	18175436	6	5943											
MAP1LC3C	440738	mdanderson.org	37	chr1	242162272	242162272	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cccaagcttttcctctgcttGaagggtctgacgcttgggat	11	11	2	2	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_001004343	exon1	c.C39A	p.F13L	CTGCTTGAAGGGT		39	3	0.08	63	0	0				0	0					T	242162272	G	T	242162272	3	4	87	1	0	0	0	0	1	0	0	0	9282	1281	45	3	420	3	MAP1LC3C	1	242162272	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	11087087	242162272	7088349	7	5944											
MATN3	4148	broad.mit.edu	37	chr2	20202975	20202975	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atccttggctacactcacagTggtgcttgccttccccatca	7	15	2	0	rs373579350	alternate_allele	TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	MATN3	NM_002381	exon3	c.A863G	p.H288R	TCACAGTGGTGCT		141	4	0.03	55	0	0		28		25	2	0.08	rescued with RNA-seq			C	20202975	T	C	20202975	3	2	87	1	0	0	0	0	1	0	0	0	9384	1696	59	4	621	4	MATN3	2	20202975	Missense_Mutation	SNP	T	TCGA-S6-A8JX-01A-11D-A435-10		20202975	222996398	8	5945											
DYNC2LI1	51626	hgsc.bcm.edu	37	chr2	44021861	44021861	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acatcacaaacaacttctttAgatttttatgcatgacttga	4	8	2	3	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_015522	exon6	c.A586C	p.R196R	TTCTTTAGATTTT		170	7	0.04	130	0	0				3	0	0				C	44021861	A	C	44021861	2	2	87	1	0	0	0	0	0	0	0	1	4873	412	15	4		4	DYNC2LI1	2	44021861	Silent	SNP	A	TCGA-S6-A8JX-01A-11D-A435-10	23818886	44021861	199177512	9	5946											
SPHKAP	80309	mdanderson.org	37	chr2	228996729	228996729	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatggagttccccgggccGcttcctgagctgccacagcc	13	15	0	2	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	SPHKAP_ENST00000392056,NS,carcinoma,0,2	SPHKAP_ENST00000392056	NM_030623	exon2	c.C105A	p.S35R	CGGGCCGCTTCCT		40	3	0.08	34	0	0		0	2	0	0					T	228996729	G	T	228996729	3	4	87	1	0	0	0	0	1	0	0	0	15103	1078	38	1	5041	1	SPHKAP	2	228996729	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	184974868	228996729	14202644	10	5947											
ARPP21	10777	ucsc.edu	37	chr3	35724364	35724364	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggctggaggctcagaatcaaGaaagaagaaaatccaaggta	12	6	2	4	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	ARPP21	NM_001267618	exon3	c.G154T	p.E52X	AATCAAGAAAGAA		34	4	0.12	60	0	0		153		0	0					T	35724364	G	T	35724364	4	4	87	1	0	0	0	0	0	1	0	0	977	943	33	3	160	3	ARPP21	3	35724364	Nonsense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10		35724364	162298066	11	5948											
LRRFIP2	9209	bcgsc.ca	37	chr3	37100309	37100309	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgatgaactgcaagtctgaGccattctgcagtcctgccag	10	12	2	2	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	LRRFIP2	NM_006309	exon26	c.C1842A	p.G614G	GTCTGAGCCATTC		48	4	0.08	46	0	0		71		113	0	0				T	37100309	G	T	37100309	2	4	87	1	0	0	0	0	0	0	0	1	9072	958	34	2		2	LRRFIP2	3	37100309	Silent	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	1375945	37100309	160922121	12	5949											
ULK4	54986	mdanderson.org	37	chr3	41497052	41497052	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcagcaggtcttctgcaGcctgagggtcctctcctgag	13	13	3	2	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_017886	exon34	c.C3428A	p.A1143D	TCTGCAGCCTGAG		19	2	0.11	26	0	0				14	0	0				T	41497052	G	T	41497052	3	4	87	1	0	0	0	0	1	0	0	0	17037	971	34	2	415	2	ULK4	3	41497052	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	4396743	41497052	156525378	13	5950											
DHX30	22907	mdanderson.org	37	chr3	47891550	47891550	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcagctgcttgcgctactGgcagagctgctgcgaggacc	16	12	0	1	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_138615	exon22	c.G3525T	p.L1175L	GCTACTGGCAGAG		45	3	0.07	37	0	0				68	0	0				T	47891550	G	T	47891550	2	4	87	1	0	0	0	0	0	0	0	1	4532	1335	47	3		3	DHX30	3	47891550	Silent	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	6394498	47891550	150130880	14	5951											
MAGI1	9223	mdanderson.org	37	chr3	65425585	65425585	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgctgCtgctgttgctgctgctgttg	14	11	0	0	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_001033057	exon9	c.G1239A	p.Q413Q	CTGCTGCTGCTGT		40	3	0.08	26	0	0				10	0	0				T	65425585	C	T	65425585	2	4	87	1	0	0	0	0	0	0	0	1	9239	796	28	2		2	MAGI1	3	65425585	Silent	SNP	C	TCGA-S6-A8JX-01A-11D-A435-10	17534035	65425585	132596845	15	5952											
MUC4	4585	mdanderson.org	37	chr3	195509308	195509308	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tggcgtgacctgtggatgctGaggaagtgtcggtgacagga	18	6	0	3	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_018406	exon2	c.C9143T	p.S3048L	GATGCTGAGGAAG		44	3	0.07	32	1	0.03125				3	1	0.33				A	195509308	G	A	195509308	3	1	87	1	0	0	0	0	1	0	0	0	10025	1294	45	3		3	MUC4	3	195509308	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	130083723	195509308	2513122	16	5953											
CXCL6	6372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	74702735	74702735	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgcacttgtttacgcgttaCgctgagagtaaaccccaaaa	8	10	0	1	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	CXCL6,NS,carcinoma,0,1	CXCL6	NM_002993	exon2	c.C164G	p.T55R	GCGTTACGCTGAG		65	33	0.51	94	0	0		0	1	0	0					G	74702735	C	G	74702735	3	3	87	1	0	0	0	0	1	0	0	0	4111	536	19	5	170	5	CXCL6	4	74702735	Missense_Mutation	SNP	C	TCGA-S6-A8JX-01A-11D-A435-10		74702735	116451541	17	5954											
PDE6A	5145	mdanderson.org	37	chr5	149265907	149265907	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccatggccaaggcctctaGgtccgtgaagtagcgcttca	12	12	2	1	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_000440	exon14	c.C1759A	p.L587I	CCTCTAGGTCCGT		49	3	0.06	63	0	0				0	0					T	149265907	G	T	149265907	3	4	87	1	0	0	0	0	1	0	0	0	11691	991	35	3	859	3	PDE6A	5	149265907	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10		149265907	31649353	18	5955											
NOL7	51406	broad.mit.edu	37	chr6	13621014	13621014	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaacaaaatgccaagagGtttaaaagacggtggatggt	11	4	0	2	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	NOL7	NM_016167	exon8	c.G729T	p.R243S	CAAGAGGTTTAAA		150	4	0.03	142	0	0		18		577	0	0				T	13621014	G	T	13621014	3	4	87	1	0	0	0	0	1	0	0	0	10572	1252	44	3	759	3	NOL7	6	13621014	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10		13621014	157494053	19	5956											
ITPR3	3710	mdanderson.org	37	chr6	33639004	33639004	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcttcagcgagctgctgcgGctcactcgcacactgctggg	13	14	2	0	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_002224	exon21	c.G2649A	p.R883R	GCTGCGGCTCACT		84	4	0.05	79	0	0				46	0	0				A	33639004	G	A	33639004	2	1	87	1	0	0	0	0	0	0	0	1	7965	1190	42	2		2	ITPR3	6	33639004	Silent	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	20017990	33639004	137476063	20	5957											
ABCC10	89845	mdanderson.org	37	chr6	43406411	43406411	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtccaagggctttggcctgGccacccaggaaccctggatc	12	14	0	0	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_001198934	exon8	c.G2005A	p.A669T	GGCCTGGCCACCC		86	5	0.06	100	0	0				142	0	0				A	43406411	G	A	43406411	3	1	87	1	0	0	0	0	1	0	0	0	50	1203	42	2	1943	2	ABCC10	6	43406411	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	9767407	43406411	127708656	21	5958											
TRAM2	9697	broad.mit.edu;mdanderson.org	37	chr6	52372382	52372382	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctccagctatatgcaccaGgtacaggcaaatatactgga	9	10	0	0	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	TRAM2	NM_012288	exon7	c.C595A	p.L199M	GCACCAGGTACAG		74	4	0.05	56	0	0		27		139	0	0				T	52372382	G	T	52372382	3	4	87	1	0	0	0	0	1	0	0	0	16513	991	35	3	537	3	TRAM2	6	52372382	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	8965971	52372382	118742685	22	5959											
AKR1B1	231	mdanderson.org	37	chr7	134135644	134135644	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggcccttctcatggtacGtgcaccacagctaagccagc	9	16	1	0	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_001628	exon3	c.C245A	p.T82K	TGGTACGTGCACC		43	3	0.07	49	0	0				212	0	0				T	134135644	G	T	134135644	3	4	87	1	0	0	0	0	1	0	0	0	463	1145	40	1	737	1	AKR1B1	7	134135644	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10		134135644	25003019	23	5960											
SLC4A2	6522	mdanderson.org	37	chr7	150772534	150772534	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtggcacctggggacaaGcccaagattcaggaagtcaa	13	10	2	1	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_001199692	exon20	c.G3240T	p.K1080N	GGACAAGCCCAAG		18	2	0.11	21	0	0				215	0	0				T	150772534	G	T	150772534	3	4	87	1	0	0	0	0	1	0	0	0	14708	962	34	2	3314	2	SLC4A2	7	150772534	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	16636890	150772534	8366129	24	5961											
DOCK5	80005	mdanderson.org	37	chr8	25203062	25203062	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tagatgacaactccaacaagCctgaccacgaggcaagctcg	9	13	0	3	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_024940	exon26	c.C2689T	p.P897S	AACAAGCCTGACC		64	4	0.06	36	0	0				7	0	0				T	25203062	C	T	25203062	3	4	87	1	0	0	0	0	1	0	0	0	4717	739	26	2	2791	2	DOCK5	8	25203062	Missense_Mutation	SNP	C	TCGA-S6-A8JX-01A-11D-A435-10		25203062	121160960	25	5962											
FBXW2	26190	bcgsc.ca	37	chr9	123527003	123527003	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtactctggcagaggccagCgactaatcaggctctctgtc	11	12	3	1	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	FBXW2_ENST00000373926,colon,carcinoma,-1,1	FBXW2	NM_012164	exon8	c.G1199A	p.R400H	GGCCAGCGACTAA		92	6	0.07	60	0	0		34	1	139	0	0				T	123527003	C	T	123527003	3	4	87	1	0	0	0	0	1	0	0	0	5798	768	27	1	169	1	FBXW2	9	123527003	Missense_Mutation	SNP	C	TCGA-S6-A8JX-01A-11D-A435-10		123527003	17686428	26	5963											
DPP7	29952	mdanderson.org	37	chr9	140005139	140005139	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccccacgcagagctggctgCtgctcacgcctggctgcctt	11	18	1	1	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_013379	exon13	c.G1440A	p.Q480Q	TGGCTGCTGCTCA		38	3	0.08	21	0	0				51	0	0				T	140005139	C	T	140005139	2	4	87	1	0	0	0	0	0	0	0	1	4757	796	28	2		2	DPP7	9	140005139	Silent	SNP	C	TCGA-S6-A8JX-01A-11D-A435-10	16478136	140005139	1208292	27	5964											
PCBD1	5092	mdanderson.org	37	chr10	72643793	72643793	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacactcatgggtgctcaGcgtgatgtggacctgaaatg	14	9	2	2	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_000281	exon4	c.C229A	p.L77M	TGCTCAGCGTGAT		47	3	0.06	50	0	0				203	0	0				T	72643793	G	T	72643793	3	4	87	1	0	0	0	0	1	0	0	0	11544	962	34	2	89	2	PCBD1	10	72643793	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10		72643793	62890954	28	5965											
EBF3	253738	mdanderson.org	37	chr10	131761739	131761739	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaattggatttccggagGttggaaggcggctgcttctc	14	7	1	1	rs143335830	alternate_allele	TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_001005463	exon2	c.C183A	p.N61K	CCGGAGGTTGGAA		41	3	0.07	51	0	0				0	0					T	131761739	G	T	131761739	3	4	87	1	0	0	0	0	1	0	0	0	4908	1252	44	3	1532	3	EBF3	10	131761739	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	59117946	131761739	3773008	29	5966											
TCERG1L	256536	mdanderson.org	37	chr10	133058643	133058643	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccacggagaccatggcagcGgcggcggcggtggcgatggc	19	12	0	1	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_174937	exon4	c.C735T	p.A245A	GGCAGCGGCGGCG		41	3	0.07	19	0	0				88	0	0				A	133058643	G	A	133058643	2	1	87	1	0	0	0	0	0	0	0	1	15745	1103	39	1		1	TCERG1L	10	133058643	Silent	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	1296904	133058643	2476104	30	5967											
FAM111B	374393	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	58892877	58892877	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaattcaacatatataaaaAggacttcggaaaaatgactg	7	6	1	1	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_198947	exon4	c.A1307G	p.K436R	ATAAAAAGGACTT		71	5	0.07	84	0	0				3	0	0				G	58892877	A	G	58892877	3	3	87	1	0	0	0	0	1	0	0	0	5431	72	3	4	1313	4	FAM111B	11	58892877	Missense_Mutation	SNP	A	TCGA-S6-A8JX-01A-11D-A435-10		58892877	76113639	31	5968											
NUDT22	84304	mdanderson.org	37	chr11	63995082	63995082	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagcaccaggacctcgctGggcagctggtggtacatgaa	13	13	0	1	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_001128612	exon3	c.G523T	p.G175W	CTCGCTGGGCAGC		48	3	0.06	81	0	0				20	0	0				T	63995082	G	T	63995082	3	4	87	1	0	0	0	0	1	0	0	0	10786	1348	47	3	529	3	NUDT22	11	63995082	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	5102205	63995082	71011434	32	5969											
DPP3	10072	mdanderson.org	37	chr11	66272124	66272124	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggccggagggcgggccctGtacgaggggtatgcaacagt	19	9	0	0	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_005700	exon17	c.G1920T	p.L640L	GGCCCTGTACGAG		39	3	0.08	51	0	0				81	0	0				T	66272124	G	T	66272124	2	4	87	1	0	0	0	0	0	0	0	1	4754	1364	48	3		3	DPP3	11	66272124	Silent	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	2277042	66272124	68734392	33	5970											
CCDC87	55231	mdanderson.org	37	chr11	66360429	66360429	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaagagcgacagcggacGcagcagccggtggtaaaacc	17	10	0	1	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_018219	exon1	c.C58A	p.R20S	GCGGACGCAGCAG		45	3	0.07	42	0	0				26	0	0				T	66360429	G	T	66360429	3	4	87	1	0	0	0	0	1	0	0	0	2882	1087	38	1	2495	1	CCDC87	11	66360429	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	88305	66360429	68646087	34	5971											
CCDC89	220388	mdanderson.org	37	chr11	85397036	85397036	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cggaggtttgccaaggcttcCctcagaccgtccagttcctt	10	14	1	1	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	CCDC89,NS,carcinoma,-1,1	CCDC89	NM_152723	exon1	c.G138T	p.R46S	GGCTTCCCTCAGA		50	3	0.06	125	0	0		-1	1	0	0					A	85397036	C	A	85397036	3	1	87	1	0	0	0	0	1	0	0	0	2886	622	22	3	990	3	CCDC89	11	85397036	Missense_Mutation	SNP	C	TCGA-S6-A8JX-01A-11D-A435-10	19036607	85397036	49609480	35	5972											
BCO2	83875	mdanderson.org	37	chr11	112071399	112071399	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgaacctgtggaaaattgCcacttctaaaattcggggaa	10	7	1	1	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_031938	exon7	c.C929T	p.A310V	AAATTGCCACTTC		41	3	0.07	77	1	0.012987013				2	0	0				T	112071399	C	T	112071399	3	4	87	1	0	0	0	0	1	0	0	0	1383	739	26	2	955	2	BCO2	11	112071399	Missense_Mutation	SNP	C	TCGA-S6-A8JX-01A-11D-A435-10	26674363	112071399	22935117	36	5973											
APOA5	116519	mdanderson.org	37	chr11	116661290	116661290	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actgaggcgcgcggggctggCgggggcgtgcggagccacac	21	12	0	1	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_052968	exon4	c.G655A	p.A219T	GGCTGGCGGGGGC		10	2	0.2	26	0	0				0	0					T	116661290	C	T	116661290	3	4	87	1	0	0	0	0	1	0	0	0	781	768	27	1	449	1	APOA5	11	116661290	Missense_Mutation	SNP	C	TCGA-S6-A8JX-01A-11D-A435-10	4589891	116661290	18345226	37	5974											
STT3A	3703	mdanderson.org	37	chr11	125484020	125484020	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tggtgggattatggctatcaGattacagctatggcaaaccg	12	7	1	1	rs113399395	alternate_allele	TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_152713	exon14	c.G1593T	p.Q531H	CTATCAGATTACA		40	3	0.08	113	0	0				91	0	0				T	125484020	G	T	125484020	3	4	87	1	0	0	0	0	1	0	0	0	15388	933	33	3	1643	3	STT3A	11	125484020	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	8822730	125484020	9522496	38	5975											
ACVR1B	91	mdanderson.org	37	chr12	52369070	52369070	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgctgtgtgcgtgcaccaGctgcctccaggccaactaca	10	15	1	0	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_004302	exon2	c.G113A	p.S38N	GCACCAGCTGCCT		47	3	0.06	34	0	0				245	0	0				A	52369070	G	A	52369070	3	1	87	1	0	0	0	0	1	0	0	0	220	971	34	2	119	2	ACVR1B	12	52369070	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10		52369070	81482825	39	5976											
HOXC11	3227	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	54367505	54367505	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcgacaacgcctactgCggtggcggcgacccgcccgc	12	17	1	0	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	HOXC11	NM_014212	exon1	c.C480T	p.C160C	CTACTGCGGTGGC		183	39	0.21	94	1	0.0106382979		32		0	0					T	54367505	C	T	54367505	2	4	87	1	0	0	0	0	0	0	0	1	7350	776	27	1		1	HOXC11	12	54367505	Silent	SNP	C	TCGA-S6-A8JX-01A-11D-A435-10	1998435	54367505	79484390	40	5977											
EP400	57634	broad.mit.edu;mdanderson.org	37	chr12	132551433	132551433	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccgtcccggcagctgtgGtctcctcaccgggagtcacc	12	16	3	0	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	EP400	NM_015409	exon49	c.G8668T	p.V2890F	GCTGTGGTCTCCT		82	5	0.06	58	0	0		370		150	0	0				T	132551433	G	T	132551433	3	4	87	1	0	0	0	0	1	0	0	0	5177	1261	44	3	8855	3	EP400	12	132551433	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	78183928	132551433	1300462	41	5978											
PROZ	8858	mdanderson.org	37	chr13	113826050	113826050	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	cagtgcccaggtgcggggctCcccgtgtgcacccctgagaa	14	15	0	1	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_001256134	exon9	c.C900A	p.L300L	GGGGCTCCCCGTG		37	3	0.08	36	0	0				8	0	0				A	113826050	C	A	113826050	2	1	87	1	0	0	0	0	0	0	0	1	12613	842	30	3		3	PROZ	13	113826050	Silent	SNP	C	TCGA-S6-A8JX-01A-11D-A435-10		113826050	1343828	42	5979											
UNKL	64718	mdanderson.org	37	chr16	1447227	1447227	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtggcaatactggcagccGtcgccgccatcgcagcgtga	14	13	0	1	rs144818814	bycluster;by1000genomes;alternate_allele	TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_001193388	exon6	c.C804A	p.D268E	GCAGCCGTCGCCG		19	3	0.16	20	0	0				10	0	0				T	1447227	G	T	1447227	3	4	87	1	0	0	0	0	1	0	0	0	17060	1160	40	1		1	UNKL	16	1447227	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10		1447227	88907526	43	5980											
SPG7	6687	mdanderson.org	37	chr16	89616973	89616973	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtttcatgagtcgggccacGccttggtgggctggatgctg	16	10	1	1	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_003119	exon13	c.G1735T	p.A579S	GGCCACGCCTTGG		55	3	0.05	47	0	0				290	0	0				T	89616973	G	T	89616973	3	4	87	1	0	0	0	0	1	0	0	0	15099	1087	38	1	1935	1	SPG7	16	89616973	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	88169746	89616973	737780	44	5981											
FGF11	2256	mdanderson.org	37	chr17	7343090	7343090	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatcctgctgtccaaggtgCgactgtgcggggggcggccc	16	13	1	0	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_004112	exon1	c.C151T	p.R51X	AAGGTGCGACTGT		28	3	0.11	32	0	0				0	0					T	7343090	C	T	7343090	4	4	87	1	0	0	0	0	0	1	0	0	5872	760	27	1	153	1	FGF11	17	7343090	Nonsense_Mutation	SNP	C	TCGA-S6-A8JX-01A-11D-A435-10		7343090	73852120	45	5982											
SOCS7	30837	broad.mit.edu	37	chr17	36508345	36508345	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagccggcggggccgggggTcaagacagtcggtgggggtt	22	9	1	1	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	SOCS7	NM_014598	exon1	c.T218G	p.V73G	CGGGGGTCAAGAC		29	3	0.1	29	4	0.1379310345		22		13	0	0				G	36508345	T	G	36508345	3	3	87	1	0	0	0	0	1	0	0	0	14972	1667	58	4	220	4	SOCS7	17	36508345	Missense_Mutation	SNP	T	TCGA-S6-A8JX-01A-11D-A435-10	29165255	36508345	44686865	46	5983											
MLX	6945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	40720884	40720884	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtgattaccaccaggagGcctacaaggagtcctacaaa	9	11	0	1	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_170607	exon4	c.G361T	p.A121S	CAGGAGGCCTACA		80	18	0.23	112	0	0				133	51	0.38				T	40720884	G	T	40720884	3	4	87	1	0	0	0	0	1	0	0	0	9682	1203	42	2	375	2	MLX	17	40720884	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	4212539	40720884	40474326	47	5984											
CA10	56934	mdanderson.org	37	chr17	49726574	49726574	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attcttgtgatagtatctctGttgagcattcgattaagaaa	8	5	2	3	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_020178	exon6	c.C603A	p.N201K	ATCTCTGTTGAGC		43	3	0.07	63	0	0				0	0					T	49726574	G	T	49726574	3	4	87	1	0	0	0	0	1	0	0	0	2529	1368	48	3	399	3	CA10	17	49726574	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	9005690	49726574	31468636	48	5985											
C17orf64	124773	mdanderson.org	37	chr17	58503678	58503678	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agcattactgccaagcctggGaaatcaaacactggagaaag	10	9	1	1	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_181707	exon3	c.G310T	p.E104X	GCCTGGGAAATCA		45	3	0.07	53	0	0				0	0					T	58503678	G	T	58503678	4	4	87	1	0	0	0	0	0	1	0	0	1881	1175	41	3	320	3	C17orf64	17	58503678	Nonsense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	8777104	58503678	22691532	49	5986											
KCNH6	81033	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	61619790	61619790	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaggtcaccttcaacctgCgggacgtgagtcagggccag	15	11	3	1	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	KCNH6	NM_030779	exon9	c.C2143T	p.R715W	AACCTGCGGGACG		34	6	0.18	60	0	0		122		1	0	0				T	61619790	C	T	61619790	3	4	87	1	0	0	0	0	1	0	0	0	8079	759	27	1	2177	1	KCNH6	17	61619790	Missense_Mutation	SNP	C	TCGA-S6-A8JX-01A-11D-A435-10	3116112	61619790	19575420	50	5987											
USP36	57602	mdanderson.org	37	chr17	76799994	76799994	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcttgggggtactggacagCaatgtggggtgggggctgaa	21	5	0	1	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_025090	exon16	c.G2283A	p.L761L	GGACAGCAATGTG		33	3	0.09	30	0	0				120	0	0				T	76799994	C	T	76799994	2	4	87	1	0	0	0	0	0	0	0	1	17126	709	25	2		2	USP36	17	76799994	Silent	SNP	C	TCGA-S6-A8JX-01A-11D-A435-10	15180204	76799994	4395216	51	5988											
SIRT7	51547	ucsc.edu;bcgsc.ca	37	chr17	79873553	79873553	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccggtagtctgggatagacGctgcctgcatgtcgagaaaa	13	10	1	2	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	SIRT7	NM_016538	exon4	c.C341T	p.A114V	ATAGACGCTGCCT		42	4	0.1	43	0	0		37		58	0	0				A	79873553	G	A	79873553	3	1	87	1	0	0	0	0	1	0	0	0	14397	1087	38	1	889	1	SIRT7	17	79873553	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	3073559	79873553	1321657	52	5989											
EPB41L3	23136	mdanderson.org	37	chr18	5397245	5397245	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctttaatgcctgtgaatgCgggctgtgctgcagcatccc	11	13	0	1	rs147247153	bycluster	TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_012307	exon18	c.G2653A	p.A885T	TGAATGCGGGCTG		53	3	0.06	60	0	0	0			1	0	0				T	5397245	C	T	5397245	3	4	87	1	0	0	0	0	1	0	0	0	5182	768	27	1	630	1	EPB41L3	18	5397245	Missense_Mutation	SNP	C	TCGA-S6-A8JX-01A-11D-A435-10		5397245	72680003	53	5990											
ONECUT2	9480	mdanderson.org	37	chr18	55103949	55103949	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggccagctggaagaaatcaAcaccaaagaggtggcccagc	13	11	1	2	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_004852	exon1	c.A1001G	p.N334S	AAATCAACACCAA		40	3	0.08	54	0	0				0	0					G	55103949	A	G	55103949	3	3	87	1	0	0	0	0	1	0	0	0	10916	43	2	4	1003	4	ONECUT2	18	55103949	Missense_Mutation	SNP	A	TCGA-S6-A8JX-01A-11D-A435-10	49706704	55103949	22973299	54	5991											
VPS4B	9525	mdanderson.org	37	chr18	61064290	61064290	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaaaatgagtagctgactGtactttcctaacaggctgca	8	8	0	2	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_004869	exon9	c.C1069A	p.Q357K	CTGACTGTACTTT		44	3	0.07	84	1	0.0119047619				36	0	0				T	61064290	G	T	61064290	3	4	87	1	0	0	0	0	1	0	0	0	17272	1386	48	3	277	3	VPS4B	18	61064290	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	5960341	61064290	17012958	55	5992											
MUC16	94025	broad.mit.edu	37	chr19	9046934	9046934	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctggttcatatggggtcTcactcaatgttgggaaggtt	12	7	4	0	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	MUC16	NM_024690	exon5	c.A34697G	p.E11566G	GGGGTCTCACTCA		99	4	0.04	105	0	0		4315		4	0	0				C	9046934	T	C	9046934	3	2	87	1	0	0	0	0	1	0	0	0	10020	1551	54	4	9146	4	MUC16	19	9046934	Missense_Mutation	SNP	T	TCGA-S6-A8JX-01A-11D-A435-10		9046934	50082049	56	5993											
ZNF85	7639	mdanderson.org	37	chr19	21132802	21132802	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaaaggttttaaatggccCtcaacccttactatccataa	6	11	1	0	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_001256171	exon5	c.C1572A	p.P524P	ATGGCCCTCAACC		47	3	0.06	24	0	0				25	0	0				A	21132802	C	A	21132802	2	1	87	1	0	0	0	0	0	0	0	1	18236	668	24	3		3	ZNF85	19	21132802	Silent	SNP	C	TCGA-S6-A8JX-01A-11D-A435-10	12085868	21132802	37996181	57	5994											
FBXO46	23403	mdanderson.org	37	chr19	46215771	46215771	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cactggcctcatccgccctgGccagcaggaactccacgttg	10	17	1	0	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_001080469	exon2	c.C983T	p.A328V	GCCCTGGCCAGCA		42	3	0.07	56	0	0				39	0	0				A	46215771	G	A	46215771	3	1	87	1	0	0	0	0	1	0	0	0	5787	1203	42	2	832	2	FBXO46	19	46215771	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	25082969	46215771	12913212	58	5995											
CCDC8	83987	hgsc.bcm.edu	37	chr19	46914867	46914867	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgattatctgtaacctctgAcccctggtcagctggggcct	10	12	3	2	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	CCDC8,NS,carcinoma,+2,1	CCDC8	NM_032040	exon1	c.T1201C	p.S401P	CCTCTGACCCCTG		66	3	0.05	56	0	0		2	1	27	0	0				G	46914867	A	G	46914867	3	3	87	1	0	0	0	0	1	0	0	0	2873	275	10	4	419	4	CCDC8	19	46914867	Missense_Mutation	SNP	A	TCGA-S6-A8JX-01A-11D-A435-10	699096	46914867	12214116	59	5996											
EPB41L1	2036	mdanderson.org	37	chr20	34809815	34809815	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ggagggttttctgagacaagGatcgagaagcgaatcatcat	13	6	3	2	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_012156	exon20	c.G2469T	p.R823S	GACAAGGATCGAG		43	3	0.07	29	0	0				46	0	0				T	34809815	G	T	34809815	3	4	87	1	0	0	0	0	1	0	0	0	5180	1165	41	3	2543	3	EPB41L1	20	34809815	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10		34809815	28215705	60	5997											
KRTAP10-5	386680	broad.mit.edu	37	chr21	45999711	45999711	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggccgggcggcagcagctggCctggtaggaggaggcagggg	23	9	0	0	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	KRTAP10-5	NM_198694	exon1	c.G745C	p.A249P	AGCTGGCCTGGTA		26	3	0.12	17	0	0		43		0	0					G	45999711	C	G	45999711	3	3	87	1	0	0	0	0	1	0	0	0	8554	739	26	5	74	5	KRTAP10-5	21	45999711	Missense_Mutation	SNP	C	TCGA-S6-A8JX-01A-11D-A435-10		45999711	2130184	61	5998											
ITGB2	3689	mdanderson.org	37	chr21	46308803	46308803	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcgaacttcaggcactcggCgcaggagctgcggggagcca	15	12	1	0	rs200894474	by1000genomes	TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_001127491	exon14	c.G1885A	p.A629T	ACTCGGCGCAGGA		25	2	0.08	19	0	0	0			34	0	0				T	46308803	C	T	46308803	3	4	87	1	0	0	0	0	1	0	0	0	7937	768	27	1	436	1	ITGB2	21	46308803	Missense_Mutation	SNP	C	TCGA-S6-A8JX-01A-11D-A435-10	309092	46308803	1821092	62	5999											
NUDT10	170685	mdanderson.org	37	chrX	51076024	51076024	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccgagaggtgtacgaagaGgcgggagtcaaggggaagtt	19	5	1	2	rs2801626		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_153183	exon2	c.G207A	p.E69E	CGAAGAGGCGGGA		276	17	0.06	189	1	0.0052910053				61	0	0				A	51076024	G	A	51076024	2	1	87	1	0	0	0	0	0	0	0	1	10773	991	35	3		3	NUDT10	23	51076024	Silent	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10		51076024	104194536	63	6000											
TAZ	6901	mdanderson.org	37	chrX	153640238	153640238	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccgctcacctggaccctgGccagcagcgtcgtcatgggc	13	17	2	0	novel		TCGA-S6-A8JX-01A-11D-A435-10	TCGA-S6-A8JX-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9db7d878-2bc2-4a70-aaa0-3b5faa979a17	49af4ca0-0413-4aa6-9eff-cce3c2f799f2	.	.	NM_181312	exon1	c.G58T	p.A20S	ACCCTGGCCAGCA		48	3	0.06	23	0	0				13	0	0				T	153640238	G	T	153640238	3	4	87	1	0	0	0	0	1	0	0	0	15652	1203	42	2	60	2	TAZ	23	153640238	Missense_Mutation	SNP	G	TCGA-S6-A8JX-01A-11D-A435-10	102564214	153640238	1630322	64	6001											
AGRN	375790	mdanderson.org	37	chr1	984809	984809	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagacctctttgtgggcggcGtacccgaggaccaggctgcc	14	14	1	1	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_198576	exon25	c.G4492A	p.V1498I	GGCGGCGTACCCG		17	2	0.12	15	0	0				30	0	0				A	984809	G	A	984809	3	1	88	1	0	0	0	0	1	0	0	0	394	1145	40	1	4590	1	AGRN	1	984809	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10		984809	248265812	1	6002											
PER3	8863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	7870564	7870564	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tgggtcagcagctctacattGagtcaatgaccaaatcatca	8	10	5	2	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_016831	exon12	c.G1435C	p.E479Q	TACATTGAGTCAA		122	39	0.32	111	0	0				14	4	0.29				C	7870564	G	C	7870564	3	2	88	1	0	0	0	0	1	0	0	0	11777	1291	45	5	1481	5	PER3	1	7870564	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	6885755	7870564	241380057	2	6003											
CLDN19	149461	mdanderson.org	37	chr1	43201580	43201580	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagagggtccaggccgatAgggctgtgggctgctgttgg	19	8	0	1	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001123395	exon4	c.T595C	p.Y199H	GCCGATAGGGCTG		44	3	0.07	69	0	0				26	0	0				G	43201580	A	G	43201580	3	3	88	1	0	0	0	0	1	0	0	0	3503	420	15	4	203	4	CLDN19	1	43201580	Missense_Mutation	SNP	A	TCGA-S6-A8JY-01A-11D-A435-10	35331016	43201580	206049041	3	6004											
LPHN2	23266	broad.mit.edu	37	chr1	82433827	82433827	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaataaaactcgaacaacgTgtgcatgcagccacctaacc	6	13	0	0	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	LPHN2_ENST00000370725,NS,carcinoma,0,2	LPHN2	NM_012302	exon12	c.T2416C	p.C806R	ACAACGTGTGCAT		132	5	0.04	149	0	0		464	2	18	2	0.11	rescued with RNA-seq			C	82433827	T	C	82433827	3	2	88	1	0	0	0	0	1	0	0	0	8960	1696	59	4	2458	4	LPHN2	1	82433827	Missense_Mutation	SNP	T	TCGA-S6-A8JY-01A-11D-A435-10	39232247	82433827	166816794	4	6005											
HRNR	388697	broad.mit.edu	37	chr1	152188602	152188604	+	In_Frame_Del	DEL	GTC	GTC	-													gtgcccggaaccggacccatGtcggccgcgactaggagact					novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	GTC	GTC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	HRNR	NM_001009931	exon3	c.5501_5503del	p.1834_1835del	ACCCATGTCGGCC		553	12	0.02	592	0	0		403		2	0	0				-	152188604	GTC	-	152188602	7	5	88	1	0	1	0	1	0	0	0	0	7399	1377	48	0	3053	0	HRNR	1	152188602	In_Frame_Del	DEL	GTC	TCGA-S6-A8JY-01A-11D-A435-10	69754775	152188602	97062019	5	6006											
PEX19	5824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	160254906	160254906	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acactacagccttcctcagcGgcggccatcttgctacctcc	7	18	2	0	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_002857	exon1	c.C9A	p.A3A	CTCAGCGGCGGCC		53	14	0.26	69	0	0				34	7	0.21				T	160254906	G	T	160254906	2	4	88	1	0	0	0	0	0	0	0	1	11791	1103	39	1		1	PEX19	1	160254906	Silent	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	8066304	160254906	88995715	6	6007											
RGS1	5996	mdanderson.org	37	chr1	192544965	192544965	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccaaagttagacaaaatgCcaggaatgttcttctctgct	7	10	2	1	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	RGS1_ENST00000367459,NS,carcinoma,-1,2	RGS1_ENST00000367459	NM_002922	exon1	c.C43T	p.P15S	AAAATGCCAGGAA		113	5	0.04	107	0	0		-1	2	28	0	0				T	192544965	C	T	192544965	3	4	88	1	0	0	0	0	1	0	0	0	13341	739	26	2	45	2	RGS1	1	192544965	Missense_Mutation	SNP	C	TCGA-S6-A8JY-01A-11D-A435-10	32290059	192544965	56705656	7	6008											
SIPA1L2	57568	mdanderson.org	37	chr1	232561342	232561342	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccctcacttacttctcagGctccccatgctgggtgcggg	11	16	2	0	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_020808	exon16	c.C4623A	p.S1541R	TCTCAGGCTCCCC		37	3	0.08	36	0	0				188	0	0				T	232561342	G	T	232561342	3	4	88	1	0	0	0	0	1	0	0	0	14384	1194	42	2	569	2	SIPA1L2	1	232561342	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	40016377	232561342	16689279	8	6009											
NMS	129521	bcgsc.ca;mdanderson.org	37	chr2	101095866	101095866	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgccaagctcgccaacaggCggatgaagagaattctgcag	12	11	1	2	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	NMS	NM_001011717	exon6	c.C313T	p.R105W	AACAGGCGGATGA		102	5	0.05	93	0	0		26		0	0					T	101095866	C	T	101095866	3	4	88	1	0	0	0	0	1	0	0	0	10548	759	27	1	335	1	NMS	2	101095866	Missense_Mutation	SNP	C	TCGA-S6-A8JY-01A-11D-A435-10		101095866	142103507	9	6010											
INHBB	3625	broad.mit.edu	37	chr2	121106822	121106822	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagccggcggaaggtgcgggTcaaagtgtacttccaggagc	16	10	1	0	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	INHBB	NM_002193	exon2	c.T596C	p.V199A	TGCGGGTCAAAGT		134	5	0.04	154	0	0		29		1	0	0				C	121106822	T	C	121106822	3	2	88	1	0	0	0	0	1	0	0	0	7785	1667	58	4	602	4	INHBB	2	121106822	Missense_Mutation	SNP	T	TCGA-S6-A8JY-01A-11D-A435-10	20010956	121106822	122092551	10	6011											
USP40	55230	hgsc.bcm.edu	37	chr2	234394246	234394246	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aaataatcttgtttttttttCtttttcctcttggttatttg	4	5	3	0	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	USP40_ENST00000450966,NS,carcinoma,0,2	USP40_ENST00000450966	NM_018218	exon29	c.G3468A	p.K1156K	TTTTTTCTTTTTC		183	9	0.05	161	1	0.0062111801		0	2	26	0	0				T	234394246	C	T	234394246	2	4	88	1	0	0	0	0	0	0	0	1	17131	912	32	3		3	USP40	2	234394246	Silent	SNP	C	TCGA-S6-A8JY-01A-11D-A435-10	113287424	234394246	8805127	11	6012											
MST1	4485	ucsc.edu	37	chr3	49725038	49725038	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaacgccgcagcctcgtgtgGggcgagtgttgagtccatgg	17	10	0	1	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	MST1	NM_020998	exon3	c.C306G	p.P102P	CGTGTGGGGCGAG		86	16	0.19	100	3	0.03		84		24	0	0				C	49725038	G	C	49725038	2	2	88	1	0	0	0	0	0	0	0	1	9937	1219	43	5		5	MST1	3	49725038	Silent	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10		49725038	148297392	12	6013											
MST1	4485	ucsc.edu;bcgsc.ca	37	chr3	49725086	49725086	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcaaccatggctgctcacGttgtagtggaaggccctgga	14	10	1	0	rs201833731	bycluster;byfrequency	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	MST1	NM_020998	exon3	c.C258T	p.N86N	GCTCACGTTGTAG		74	13	0.18	87	2	0.0229885057		84		31	0	0				A	49725086	G	A	49725086	2	1	88	1	0	0	0	0	0	0	0	1	9937	1136	40	1		1	MST1	3	49725086	Silent	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	48	49725086	148297344	13	6014											
SLC12A8	84561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	124909295	124909295	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atgtgaacacaccatcccagGtcccaaacagcacaggctcc	7	16	0	1	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_024628	exon3	c.C122G	p.T41S	TCCCAGGTCCCAA		223	54	0.24	255	0	0				12	3	0.25				C	124909295	G	C	124909295	3	2	88	1	0	0	0	0	1	0	0	0	14443	1261	44	5	2070	5	SLC12A8	3	124909295	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	75184209	124909295	73113135	14	6015											
AMOTL2	51421	ucsc.edu;bcgsc.ca	37	chr3	134080365	134080365	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagctcacctgctgtgcacGcagggccttgagttcctgct	11	14	2	1	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	AMOTL2	NM_016201	exon6	c.C1564A	p.R522S	GTGCACGCAGGGC		37	4	0.11	55	0	0		52		16	0	0				T	134080365	G	T	134080365	3	4	88	1	0	0	0	0	1	0	0	0	580	1087	38	1	798	1	AMOTL2	3	134080365	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	9171070	134080365	63942065	15	6016											
MUC4	4585	mdanderson.org	37	chr3	195509071	195509071	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cctgacctgtggatgctgagGaagtgtcggtgacaggaaga	16	7	0	4	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_018406	exon2	c.C9380A	p.S3127Y	GCTGAGGAAGTGT		43	7	0.16	54	2	0.037037037				1	0	0				T	195509071	G	T	195509071	3	4	88	1	0	0	0	0	1	0	0	0	10025	1174	41	3		3	MUC4	3	195509071	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	61428706	195509071	2513359	16	6017											
FIP1L1	81608	hgsc.bcm.edu	37	chr4	54257228	54257228	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaatgaagatacctggaaAgcttactgtgaaaaacaaaa	7	5	0	3	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_030917	exon8	c.A558G	p.K186K	CTGGAAAGCTTAC		365	85	0.23	186	0	0				224	0	0				G	54257228	A	G	54257228	2	3	88	1	0	0	0	0	0	0	0	1	5928	69	3	4		4	FIP1L1	4	54257228	Silent	SNP	A	TCGA-S6-A8JY-01A-11D-A435-10		54257228	136897048	17	6018											
BMP3	651	mdanderson.org	37	chr4	81967030	81967030	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtccagtgtctggaggatGctcccatcatgctcagagga	12	10	3	1	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001201	exon2	c.G455T	p.C152F	GAGGATGCTCCCA		49	3	0.06	60	0	0				0	0					T	81967030	G	T	81967030	3	4	88	1	0	0	0	0	1	0	0	0	1460	1319	46	2	461	2	BMP3	4	81967030	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	27709802	81967030	109187246	18	6019											
LECT2	3950	mdanderson.org	37	chr5	135287021	135287021	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacacagtagatccagcagaGcacaagatgtccacaccctg	8	13	0	3	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_002302	exon3	c.C180A	p.C60X	AGCAGAGCACAAG		51	3	0.06	71	0	0				9	0	0				T	135287021	G	T	135287021	4	4	88	1	0	0	0	0	0	1	0	0	8751	963	34	2	283	2	LECT2	5	135287021	Nonsense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10		135287021	45628239	19	6020											
PCDHGA2	56113	mdanderson.org	37	chr5	140720516	140720516	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctctccgccactgtcacgCtcaccgtggccgtggccgac	10	19	3	0	rs61742830	byfrequency;alternate_allele	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_032009	exon1	c.C1978T	p.L660F	GTCACGCTCACCG		49	2	0.04	76	0	0				12	0	0				T	140720516	C	T	140720516	3	4	88	1	0	0	0	0	1	0	0	0	11600	797	28	2	1980	2	PCDHGA2	5	140720516	Missense_Mutation	SNP	C	TCGA-S6-A8JY-01A-11D-A435-10	5433495	140720516	40194744	20	6021											
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	12121882	12121883	+	Frame_Shift_Del	DEL	TA	TA	-													ggagtctccaggttggagacTaatgagaattcccaccagaa					novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	TA	TA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	HIVEP1,NS,carcinoma,0,1	HIVEP1	NM_002114	exon4	c.1853_1854del	p.618_618del	GGAGACTAATGAG		90	26	0.29	80	0	0		242		10	1	0.1				-	12121883	TA	-	12121882	7	5	88	1	0	1	0	1	0	0	0	0	7226	1509	53	0	1864	0	HIVEP1	6	12121882	Frame_Shift_Del	DEL	TA	TCGA-S6-A8JY-01A-11D-A435-10		12121882	158993185	21	6022											
SIRT5	23408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	13588626	13588626	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcatcatctcaggagctgGtgttagtgcagaaagtggtg	14	6	3	1	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_012241	exon4	c.G179T	p.G60V	GAGCTGGTGTTAG		152	43	0.28	146	0	0				83	23	0.28				T	13588626	G	T	13588626	3	4	88	1	0	0	0	0	1	0	0	0	14395	1261	44	3	185	3	SIRT5	6	13588626	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	1466744	13588626	157526441	22	6023											
SLC17A4	10050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	25777039	25777039	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtttgtcctcctaccccaGgggttctcttcccatccgtg	9	15	1	0	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	SLC17A4,NS,carcinoma,-1,1	SLC17A4	NM_005495	exon10	c.1121-1G>A	.	ACCCCAGGGGTTC		104	31	0.3	116	0	0		-1	1	0	0					A	25777039	G	A	25777039	5	1	88	1	0	0	0	0	0	0	1	0	14473	1014	35	3	1154	3	SLC17A4	6	25777039	Splice_Site	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	12188413	25777039	145338028	23	6024											
GTPBP2	54676	mdanderson.org	37	chr6	43592665	43592665	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgaggagcagggcgcagtcGgggcagtatgatgtgaggcc	19	8	0	2	rs143185915	alternate_allele	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_019096	exon6	c.C840A	p.P280P	GCAGTCGGGGCAG		48	3	0.06	81	0	0				224	0	0				T	43592665	G	T	43592665	2	4	88	1	0	0	0	0	0	0	0	1	6920	1103	39	1		1	GTPBP2	6	43592665	Silent	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	17815626	43592665	127522402	24	6025											
RELN	5649	mdanderson.org	37	chr7	103275912	103275912	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atatgaataatgctccaggaGtttccaagttatcccattat	6	8	0	1	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_005045	exon19	c.C2425A	p.L809I	CCAGGAGTTTCCA		43	3	0.07	31	0	0				1	0	0				T	103275912	G	T	103275912	3	4	88	1	0	0	0	0	1	0	0	0	13271	1029	36	3	8145	3	RELN	7	103275912	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10		103275912	55862751	25	6026											
CPSF1	29894	mdanderson.org	37	chr8	145622524	145622524	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcctccctgcgggcctcGccctgtgtagtgggctgtcc	13	17	0	0	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_013291	exon23	c.C2490A	p.G830G	GGCCTCGCCCTGT		38	4	0.11	51	0	0				229	0	0				T	145622524	G	T	145622524	2	4	88	1	0	0	0	0	0	0	0	1	3847	1074	38	1		1	CPSF1	8	145622524	Silent	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10		145622524	741498	26	6027											
CRB2	286204	mdanderson.org	37	chr9	126125220	126125220	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	accgagtgccaggctaccgaGagtggtggctatacctgtgg	15	10	0	1	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_173689	exon2	c.G171T	p.E57D	TACCGAGAGTGGT		38	3	0.08	57	0	0				0	0					T	126125220	G	T	126125220	3	4	88	1	0	0	0	0	1	0	0	0	3872	933	33	3	177	3	CRB2	9	126125220	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10		126125220	15088211	27	6028											
TRUB2	26995	mdanderson.org	37	chr9	131073824	131073824	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tcacatcaccagggccttctGatgggagccttggataacgg	12	11	3	1	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_015679	exon6	c.C517A	p.Q173K	CCTTCTGATGGGA		49	3	0.06	99	0	0				120	0	0				T	131073824	G	T	131073824	3	4	88	1	0	0	0	0	1	0	0	0	16663	1299	45	3	490	3	TRUB2	9	131073824	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	4948604	131073824	10139607	28	6029											
RAPGEF1	2889	mdanderson.org	37	chr9	134503405	134503405	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctatgctgctgcagggggAgaggcggggcgactctccac	17	12	1	1	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_198679	exon9	c.T1099C	p.S367P	AGGGGGAGAGGCG		23	2	0.09	34	0	0				122	0	0				G	134503405	A	G	134503405	3	3	88	1	0	0	0	0	1	0	0	0	13094	304	11	4	2252	4	RAPGEF1	9	134503405	Missense_Mutation	SNP	A	TCGA-S6-A8JY-01A-11D-A435-10	3429581	134503405	6710026	29	6030											
AKR1C4	1109	hgsc.bcm.edu	37	chr10	5242213	5242213	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttccgccatattgattctGcttatttatacaataatgag	6	8	1	2	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001818	exon2	c.G154T	p.A52S	GATTCTGCTTATT		105	5	0.05	105	0	0				0	0					T	5242213	G	T	5242213	3	4	88	1	0	0	0	0	1	0	0	0	469	1319	46	2	160	2	AKR1C4	10	5242213	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10		5242213	130292534	30	6031											
ABCC2	1244	hgsc.bcm.edu;mdanderson.org	37	chr10	101563999	101563999	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttgtaatcccaattaatgCgatactgtccaccaagagta	7	10	0	1	rs201399138		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	ABCC2,NS,carcinoma,0,2	ABCC2	NM_000392	exon10	c.C1433T	p.A478V	TTAATGCGATACT		80	4	0.05	102	0	0	0.001	0	2	1	0	0				T	101563999	C	T	101563999	3	4	88	1	0	0	0	0	1	0	0	0	53	768	27	1	1471	1	ABCC2	10	101563999	Missense_Mutation	SNP	C	TCGA-S6-A8JY-01A-11D-A435-10	96321786	101563999	33970748	31	6032											
C10orf2	56652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	102753124	102753124	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	caccaaagaacaaggcccggCtcaagaagatcaaggatgac	10	11	2	4	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_021830	exon5	c.C1912G	p.L638V	GCCCGGCTCAAGA		134	46	0.34	111	0	0				203	70	0.34				G	102753124	C	G	102753124	3	3	88	1	0	0	0	0	1	0	0	0	1601	797	28	5	1945	5	C10orf2	10	102753124	Missense_Mutation	SNP	C	TCGA-S6-A8JY-01A-11D-A435-10	1189125	102753124	32781623	32	6033											
OR52I2	143502	broad.mit.edu;mdanderson.org	37	chr11	4608061	4608061	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acatgtgtcaacaaatcttaCgggattgcattcttctcata	6	9	4	0	rs200571706	bycluster	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	OR52I2,caecum,carcinoma,0,1	OR52I2	NM_001005170	exon1	c.C19T	p.R7W	ATCTTACGGGATT		68	4	0.06	94	0	0		50	1	0	0					T	4608061	C	T	4608061	3	4	88	1	0	0	0	0	1	0	0	0	11168	527	19	1	21	1	OR52I2	11	4608061	Missense_Mutation	SNP	C	TCGA-S6-A8JY-01A-11D-A435-10		4608061	130398455	33	6034											
ABTB2	25841	mdanderson.org	37	chr11	34186251	34186251	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	acctgtggccgtgggcagctGagtggctgaagcagttcatg	16	9	1	2	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_145804	exon9	c.C1970A	p.S657X	GCAGCTGAGTGGC		47	3	0.06	70	0	0				1	0	0				T	34186251	G	T	34186251	4	4	88	1	0	0	0	0	0	1	0	0	103	1294	45	3	1143	3	ABTB2	11	34186251	Nonsense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	29578190	34186251	100820265	34	6035											
PHF21A	51317	mdanderson.org	37	chr11	45955621	45955621	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggcagggggggtgcagtcCgggccattggagatggcccc	19	10	0	1	rs199802844	bycluster;by1000genomes	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001101802	exon18	c.G1941A	p.P647P	GCAGTCCGGGCCA		42	3	0.07	61	0	0	0.001			93	0	0				T	45955621	C	T	45955621	2	4	88	1	0	0	0	0	0	0	0	1	11880	639	23	1		1	PHF21A	11	45955621	Silent	SNP	C	TCGA-S6-A8JY-01A-11D-A435-10	11769370	45955621	89050895	35	6036											
MAP3K11	4296	mdanderson.org	37	chr11	65380778	65380778	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcacactgatgtcctcatcGgggtcctggcgagctgcctt	12	13	2	1	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_002419	exon1	c.C450A	p.P150P	CTCATCGGGGTCC		42	3	0.07	72	0	0				60	0	0				T	65380778	G	T	65380778	2	4	88	1	0	0	0	0	0	0	0	1	9294	1103	39	1		1	MAP3K11	11	65380778	Silent	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	19425157	65380778	69625738	36	6037											
KRTAP5-7	440050	ucsc.edu	37	chr11	71238418	71238418	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctccggctgtgggggctgTggctctggctgtgggggatg	22	8	1	0	rs201675734	bycluster;byfrequency	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	KRTAP5-7	NM_001012503	exon1	c.T72C	p.C24C	GGGCTGTGGCTCT		118	25	0.21	156	13	0.0833333333		23		0	0					C	71238418	T	C	71238418	2	2	88	1	0	0	0	0	0	0	0	1	8604	1702	59	4		4	KRTAP5-7	11	71238418	Silent	SNP	T	TCGA-S6-A8JY-01A-11D-A435-10	5857640	71238418	63768098	37	6038											
BUD13	84811	mdanderson.org	37	chr11	116633328	116633328	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcttgcttttttcgtggaGgagagatgtcagggtcatac	13	6	2	1	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_032725	exon4	c.C977A	p.P326H	CGTGGAGGAGAGA		48	3	0.06	111	0	0				32	0	0				T	116633328	G	T	116633328	3	4	88	1	0	0	0	0	1	0	0	0	1576	1000	35	3	910	3	BUD13	11	116633328	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	45394910	116633328	18373188	38	6039											
VWA5A	4013	mdanderson.org	37	chr11	123988930	123988930	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagaaagccatctcccaggGccaccaggccttcttattgg	10	13	2	1	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_014622	exon4	c.G281T	p.G94V	CCCAGGGCCACCA		69	5	0.07	171	0	0				5	0	0				T	123988930	G	T	123988930	3	4	88	1	0	0	0	0	1	0	0	0	17301	1203	42	2	291	2	VWA5A	11	123988930	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	7355602	123988930	11017586	39	6040											
GLB1L2	89944	mdanderson.org	37	chr11	134238570	134238570	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgtctgccattgtggacGccggctcctccatcaacctc	9	17	2	0	rs148929536	byfrequency;alternate_allele	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_138342	exon10	c.G922T	p.A308S	GTGGACGCCGGCT		17	2	0.12	68	0	0				11	0	0				T	134238570	G	T	134238570	3	4	88	1	0	0	0	0	1	0	0	0	6470	1087	38	1	960	1	GLB1L2	11	134238570	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	10249640	134238570	767946	40	6041											
ITPR2	3709	broad.mit.edu	37	chr12	26640046	26640046	+	Frame_Shift_Del	DEL	T	T	-													caattcattgtcatcgtcccTttttttgttacctaaatcta					novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	ITPR2	NM_002223	exon40	c.5509delA	p.R1837fs	CGTCCCTTTTTTT		1267	7	0.01	140	0	0		270		94	0	0				-	26640046	T	-	26640046	7	5	88	1	0	1	0	1	0	0	0	0	7964	1608	56	0	2668	0	ITPR2	12	26640046	Frame_Shift_Del	DEL	T	TCGA-S6-A8JY-01A-11D-A435-10		26640046	107211849	41	6042											
ARNTL2	56938	broad.mit.edu	37	chr12	27543058	27543058	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagttcacagtaatctccacGctggaaggacacgtgtgtat	10	9	2	0	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	ARNTL2	NM_020183	exon9	c.G805T	p.A269S	CTCCACGCTGGAA		1142	6	0.01	125	0	0		54		422	0	0				T	27543058	G	T	27543058	3	4	88	1	0	0	0	0	1	0	0	0	967	1087	38	1	839	1	ARNTL2	12	27543058	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	903012	27543058	106308837	42	6043											
DDX11	1663	broad.mit.edu	37	chr12	31238044	31238044	+	Frame_Shift_Del	DEL	A	A	-													aatacgagagtgatgaggagAaaaaggtggcgagcaggtga					novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	DDX11	NM_030653	exon5	c.622delA	p.K208fs	GAGGAGAAAAAGG		1932	8	0	307	0	0		188		1067	0	0				-	31238044	A	-	31238044	7	5	88	1	0	1	0	1	0	0	0	0	4366	247	9	0	636	0	DDX11	12	31238044	Frame_Shift_Del	DEL	A	TCGA-S6-A8JY-01A-11D-A435-10	3694986	31238044	102613851	43	6044											
CPSF6	11052	mdanderson.org	37	chr12	69653285	69653285	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaaatagggcaatctcaaGcagtgctatttcgagagctg	11	7	1	2	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_007007	exon7	c.G1277T	p.S426I	TCTCAAGCAGTGC		49	3	0.06	50	0	0				339	0	0				T	69653285	G	T	69653285	3	4	88	1	0	0	0	0	1	0	0	0	3852	971	34	2	1303	2	CPSF6	12	69653285	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	38415241	69653285	64198610	44	6045											
DDX54	79039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	113617043	113617043	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcactgtgggtcttgagccGctcgaacattgggaggagga	17	8	1	1	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	DDX54,NS,carcinoma,0,1	DDX54	NM_024072	exon4	c.C469T	p.R157W	TGAGCCGCTCGAA		66	19	0.29	68	0	0		0	1	231	83	0.36				A	113617043	G	A	113617043	3	1	88	1	0	0	0	0	1	0	0	0	4395	1086	38	1	2247	1	DDX54	12	113617043	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	43963758	113617043	20234852	45	6046											
FKBP3	2287	bcgsc.ca	37	chr14	45590789	45590789	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagttggttttatctcccTttttcagaacagatttagta	7	6	2	2	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	FKBP3	NM_002013	exon4	c.A353G	p.K118R	TCTCCCTTTTTCA		40	4	0.1	71	0	0		21		301	0	0				C	45590789	T	C	45590789	3	2	88	1	0	0	0	0	1	0	0	0	5941	1609	56	4	337	4	FKBP3	14	45590789	Missense_Mutation	SNP	T	TCGA-S6-A8JY-01A-11D-A435-10		45590789	61758751	46	6047											
ZFYVE26	23503	mdanderson.org	37	chr14	68221866	68221866	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtagatcttcaggtggtcCttggccttaagtagccatga	12	8	2	2	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_015346	exon37	c.G6888T	p.K2296N	GTGGTCCTTGGCC		60	5	0.08	119	1	0.0084033613				83	0	0				A	68221866	C	A	68221866	3	1	88	1	0	0	0	0	1	0	0	0	17725	680	24	3	755	3	ZFYVE26	14	68221866	Missense_Mutation	SNP	C	TCGA-S6-A8JY-01A-11D-A435-10	22631077	68221866	39127674	47	6048											
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	42003218	42003218	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcatcttataaatccattTtaccataccctgtttcacca	1	12	3	0	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001080541	exon8	c.T2755G	p.L919V	TCCATTTTACCAT		117	28	0.24	86	0	0				28	6	0.21				G	42003218	T	G	42003218	3	3	88	1	0	0	0	0	1	0	0	0	9589	1838	64	4	2781	4	MGA	15	42003218	Missense_Mutation	SNP	T	TCGA-S6-A8JY-01A-11D-A435-10		42003218	60528174	48	6049											
KIAA1199	57214	broad.mit.edu	37	chr15	81217004	81217004	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagtcaaaaccaccgaggccTctgccaaggacaagcggccg	12	14	2	0	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	KIAA1199	NM_018689	exon17	c.T2245C	p.S749P	GAGGCCTCTGCCA		125	5	0.04	92	0	0		118		0	0					C	81217004	T	C	81217004	3	2	88	1	0	0	0	0	1	0	0	0	8254	1551	54	4	2307	4	KIAA1199	15	81217004	Missense_Mutation	SNP	T	TCGA-S6-A8JY-01A-11D-A435-10	39213786	81217004	21314388	49	6050											
RHBDF1	64285	mdanderson.org	37	chr16	109430	109430	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacctacctgagagcagagcGtggcctcctcatggaagtag	13	11	1	2	rs375953787		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_022450	exon15	c.C1880T	p.T627M	CAGAGCGTGGCCT		48	3	0.06	62	0	0				56	0	0				A	109430	G	A	109430	3	1	88	1	0	0	0	0	1	0	0	0	13368	1145	40	1	703	1	RHBDF1	16	109430	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10		109430	90245323	50	6051											
HAGH	3029	mdanderson.org	37	chr16	1859331	1859331	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctccctgcgcacggcccGcatggtggtcaccgggtccg	13	17	2	0	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	HAGH,bladder,carcinoma,+1,1	HAGH	NM_005326	exon9	c.C880T	p.R294W	CGGCCCGCATGGT		36	3	0.08	32	0	0		1	1	149	0	0				A	1859331	G	A	1859331	3	1	88	1	0	0	0	0	1	0	0	0	6985	1086	38	1	50	1	HAGH	16	1859331	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	1749901	1859331	88495422	51	6052											
CASKIN1	57524	mdanderson.org	37	chr16	2231335	2231335	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggtggcaggtggctggaGggcttctcagtggtgggccc	21	8	1	0	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_020764	exon18	c.C2034A	p.P678P	GCTGGAGGGCTTC		26	3	0.12	29	0	0				28	0	0				T	2231335	G	T	2231335	2	4	88	1	0	0	0	0	0	0	0	1	2684	987	35	3		3	CASKIN1	16	2231335	Silent	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	372004	2231335	88123418	52	6053											
ATXN2L	11273	mdanderson.org	37	chr16	28846413	28846413	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catgcttcagagcaacccacGcatgctgacgtcgggcagcc	11	15	1	2	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_148416	exon19	c.G2468T	p.R823L	ACCCACGCATGCT		55	3	0.05	51	0	0				846	0	0				T	28846413	G	T	28846413	3	4	88	1	0	0	0	0	1	0	0	0	1210	1087	38	1	2542	1	ATXN2L	16	28846413	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	26615078	28846413	61508340	53	6054											
ANKRD11	29123	mdanderson.org	37	chr16	89341536	89341536	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtagacgcagctttccccGgacggcctcctgctgcctga	11	16	0	2	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_013275	exon10	c.C7534A	p.R2512R	TTCCCCGGACGGC		43	3	0.07	44	0	0				277	0	0				T	89341536	G	T	89341536	2	4	88	1	0	0	0	0	0	0	0	1	635	1115	39	1		1	ANKRD11	16	89341536	Silent	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	60495123	89341536	1013217	54	6055											
NLRP1	22861	mdanderson.org	37	chr17	5436697	5436697	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgagcaacatgggaagcCgccctctctacagaaaaaag	10	12	1	2	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_014922	exon10	c.G3060T	p.A1020A	GGAAGCCGCCCTC		34	3	0.09	30	0	0				20	0	0				A	5436697	C	A	5436697	2	1	88	1	0	0	0	0	0	0	0	1	10517	639	23	1		1	NLRP1	17	5436697	Silent	SNP	C	TCGA-S6-A8JY-01A-11D-A435-10		5436697	75758513	55	6056											
MPRIP	23164	mdanderson.org	37	chr17	17079783	17079783	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaatacagtacctgaaacAggagattagctccctcaagg	10	9	1	2	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_015134	exon20	c.A2753G	p.Q918R	TGAAACAGGAGAT		33	3	0.09	35	0	0				163	0	0				G	17079783	A	G	17079783	3	3	88	1	0	0	0	0	1	0	0	0	9791	188	7	4	2831	4	MPRIP	17	17079783	Missense_Mutation	SNP	A	TCGA-S6-A8JY-01A-11D-A435-10	11643086	17079783	64115427	56	6057											
LRRC37B	114659	mdanderson.org	37	chr17	30349013	30349013	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcctcttcactccaggaagAagccccagcgcagcttctac	8	16	3	1	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_052888	exon1	c.A848G	p.E283G	AGGAAGAAGCCCC		42	3	0.07	51	0	0				22	0	0				G	30349013	A	G	30349013	3	3	88	1	0	0	0	0	1	0	0	0	9038	246	9	4	850	4	LRRC37B	17	30349013	Missense_Mutation	SNP	A	TCGA-S6-A8JY-01A-11D-A435-10	13269230	30349013	50846197	57	6058											
TCF3	6929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	1612333	1612333	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agctcccggaaggcctcgttAatatcccgcacgcgcacccg	10	17	0	0	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001136139	exon17	c.T1686G	p.I562M	CTCGTTAATATCC		145	39	0.27	157	0	0				124	68	0.55				C	1612333	A	C	1612333	3	2	88	1	0	0	0	0	1	0	0	0	15753	358	13	4	277	4	TCF3	19	1612333	Missense_Mutation	SNP	A	TCGA-S6-A8JY-01A-11D-A435-10		1612333	57516650	58	6059											
MYO9B	4650	mdanderson.org	37	chr19	17316915	17316915	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggcctctaccgcaagtcGggtgctgccaaccgcactcg	13	15	1	0	rs367648233	alternate_allele	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001130065	exon32	c.G5211T	p.S1737S	CAAGTCGGGTGCT		43	3	0.07	50	0	0				112	0	0				T	17316915	G	T	17316915	2	4	88	1	0	0	0	0	0	0	0	1	10132	1103	39	1		1	MYO9B	19	17316915	Silent	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	15704582	17316915	41812068	59	6060											
ANKLE1	126549	broad.mit.edu	37	chr19	17397500	17397501	+	Frame_Shift_Del	DEL	TT	TT	-													tgtgtgtgtgtgtgtgtgtgTttgtgtgtgtgtgtgtgtgt					rs10606406	alternate_allele	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	TT	TT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	ANKLE1	.	.	.	.	TGTGTGTTTGTGT		14	13	0.93	13	0	0		27		4	0	0				-	17397501	TT	-	17397500	7	5	88	1	0	1	0	1	0	0	0	0	628	1740	60	0		0	ANKLE1	19	17397500	Frame_Shift_Del	DEL	TT	TCGA-S6-A8JY-01A-11D-A435-10	80585	17397500	41731483	60	6061											
C19orf54	284325	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	41250532	41250532	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtatgagtctctccagggggAcgccactggggggcgacagg	18	10	1	1	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	C19orf54	NM_198476	exon3	c.T449C	p.V150A	AGGGGGACGCCAC		74	4	0.05	77	1	0.012987013		13		91	0	0				G	41250532	A	G	41250532	3	3	88	1	0	0	0	0	1	0	0	0	1948	275	10	4	622	4	C19orf54	19	41250532	Missense_Mutation	SNP	A	TCGA-S6-A8JY-01A-11D-A435-10	23853032	41250532	17878451	61	6062											
MYH14	79784	mdanderson.org	37	chr19	50760599	50760599	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtgagcagcctgggcgaCggcccaccaggtggccgccc	16	16	0	1	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001145809	exon18	c.C2088T	p.D696D	GGGCGACGGCCCA		44	3	0.07	44	0	0				36	0	0				T	50760599	C	T	50760599	2	4	88	1	0	0	0	0	0	0	0	1	10080	535	19	1		1	MYH14	19	50760599	Silent	SNP	C	TCGA-S6-A8JY-01A-11D-A435-10	9510067	50760599	8368384	62	6063											
SHANK1	50944	mdanderson.org	37	chr19	51172415	51172415	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggggactggaggtgtGctgtagggaggctccggtgg	23	5	0	0	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	SHANK1,NS,carcinoma,-1,1	SHANK1	NM_016148	exon22	c.C2802A	p.S934R	AGGTGTGCTGTAG		19	2	0.11	35	0	0		-1	1	2	0	0				T	51172415	G	T	51172415	3	4	88	1	0	0	0	0	1	0	0	0	14318	1310	46	2	3691	2	SHANK1	19	51172415	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	411816	51172415	7956568	63	6064											
ZNF606	80095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	58490600	58490600	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cacactcattacaaacataaGgtttttctcctgtatgaatt	4	9	2	1	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_025027	exon7	c.C1448G	p.P483R	ACATAAGGTTTTT		71	11	0.15	79	0	0				43	19	0.44				C	58490600	G	C	58490600	3	2	88	1	0	0	0	0	1	0	0	0	18088	1000	35	5	934	5	ZNF606	19	58490600	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	7318185	58490600	638383	64	6065											
PYGB	5834	mdanderson.org	37	chr20	25277029	25277029	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaaggagtggaccaagaaGgtcatcaggaacatcgcctg	12	11	2	1	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_002862	exon20	c.G2403T	p.K801N	CAAGAAGGTCATC		49	3	0.06	66	0	0				934	1	0				T	25277029	G	T	25277029	3	4	88	1	0	0	0	0	1	0	0	0	12911	991	35	3	2481	3	PYGB	20	25277029	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10		25277029	37748491	65	6066											
CDH22	64405	mdanderson.org	37	chr20	44815231	44815231	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gggtttggaggctcaccttgGatgtcaagcagagagaaatg	15	6	2	2	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	CDH22,NS,carcinoma,0,1	CDH22	NM_021248	exon10	c.C1659A	p.I553I	ACCTTGGATGTCA		44	3	0.07	63	0	0		0	1	0	0					T	44815231	G	T	44815231	2	4	88	1	0	0	0	0	0	0	0	1	3129	1164	41	3		3	CDH22	20	44815231	Silent	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	19538202	44815231	18210289	66	6067											
APCDD1L	164284	mdanderson.org	37	chr20	57042182	57042182	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtgcgctctgcagcgggcGctggtagcccgtgggccggt	18	13	1	0	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_153360	exon3	c.C721T	p.R241C	GCGGGCGCTGGTA		29	3	0.1	29	0	0				0	0					A	57042182	G	A	57042182	3	1	88	1	0	0	0	0	1	0	0	0	762	1087	38	1	792	1	APCDD1L	20	57042182	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	12226951	57042182	5983338	67	6068											
NEFH	4744	hgsc.bcm.edu	37	chr22	29885638	29885638	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagaaggccaagtccccagTgaaggcagaagcaaagtccc	12	11	0	3	rs190692435	bycluster	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	NEFH,NS,lymphoid_neoplasm,0,1	NEFH	NM_021076	exon4	c.T2009A	p.V670E	CCCCAGTGAAGGC		229	12	0.05	169	0	0		0	1	727	18	0.02				A	29885638	T	A	29885638	3	1	88	1	0	0	0	0	1	0	0	0	10360	1696	59	5	2023	5	NEFH	22	29885638	Missense_Mutation	SNP	T	TCGA-S6-A8JY-01A-11D-A435-10		29885638	21418928	68	6069											
DEPDC5	9681	bcgsc.ca;mdanderson.org	37	chr22	32193622	32193622	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagagaagagaagaatggacTtcacttctcgtaaccattaa	9	7	2	3	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	DEPDC5	NM_001242897	exon13	c.T804C	p.T268T	ATGGACTTCACTT		94	5	0.05	92	0	0		266		22	0	0				C	32193622	T	C	32193622	2	2	88	1	0	0	0	0	0	0	0	1	4470	1596	56	4		4	DEPDC5	22	32193622	Silent	SNP	T	TCGA-S6-A8JY-01A-11D-A435-10	2307984	32193622	19110944	69	6070											
IL17REL	400935	broad.mit.edu;mdanderson.org	37	chr22	50438258	50438258	+	Splice_Site	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ccggggcgcgggcgctcactCgcacaggggcgccggcgtcc	18	17	1	0	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	IL17REL	NM_001001694	exon7	c.G473A	p.R158Q	CTCACTCGCACAG		33	5	0.15	34	0	0		21		0	0					T	50438258	C	T	50438258	5	4	88	1	0	0	0	0	0	0	1	0	7687	898	31	1	569	1	IL17REL	22	50438258	Splice_Site	SNP	C	TCGA-S6-A8JY-01A-11D-A435-10	18244636	50438258	866308	70	6071											
TLR7	51284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	12904184	12904184	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gggccaaaactgttattatcGaaatccttgttatgtttcat	7	7	1	0	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_016562	exon3	c.G557T	p.R186L	ATTATCGAAATCC		92	40	0.43	82	0	0				2	0	0				T	12904184	G	T	12904184	3	4	88	1	0	0	0	0	1	0	0	0	16015	1058	37	1	563	1	TLR7	23	12904184	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10		12904184	142366376	71	6072											
GNL3L	54552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	54584946	54584946	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacgcaatgtggaccaccgCcctaagagcaacagtatggt	10	11	0	1	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001184819	exon15	c.C1524T	p.R508R	CCACCGCCCTAAG		111	36	0.32	80	0	0				55	24	0.44				T	54584946	C	T	54584946	2	4	88	1	0	0	0	0	0	0	0	1	6579	726	26	2		2	GNL3L	23	54584946	Silent	SNP	C	TCGA-S6-A8JY-01A-11D-A435-10	41680762	54584946	100685614	72	6073											
TAF7L	54457	mdanderson.org	37	chrX	100533046	100533046	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ataaaggatacgggtacttaCggcttcagcatccgaacgca	10	10	1	0	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_024885	exon8	c.G826A	p.V276I	TACTTACGGCTTC		41	3	0.07	29	0	0				0	0					T	100533046	C	T	100533046	3	4	88	1	0	0	0	0	1	0	0	0	15589	536	19	1	586	1	TAF7L	23	100533046	Missense_Mutation	SNP	C	TCGA-S6-A8JY-01A-11D-A435-10	45948100	100533046	54737514	73	6074											
GLA	2717	broad.mit.edu;mdanderson.org	37	chrX	100653456	100653456	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcttgagggctgatgtgtcGgaggtcattagacatgaata	15	5	1	4	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	GLA	NM_000169	exon6	c.C901G	p.R301G	TGTGTCGGAGGTC		54	4	0.07	52	0	0		43		97	4	0.04				C	100653456	G	C	100653456	3	2	88	1	0	0	0	0	1	0	0	0	6467	1124	39	5	396	5	GLA	23	100653456	Missense_Mutation	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	120410	100653456	54617104	74	6075											
BRS3	680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	135572573	135572573	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tatctctgtctactattcctTgattgctaggaccctttaca	5	11	2	1	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001727	exon2	c.T716G	p.L239W	ATTCCTTGATTGC		64	21	0.33	55	0	0				0	0					G	135572573	T	G	135572573	3	3	88	1	0	0	0	0	1	0	0	0	1524	1821	63	4	722	4	BRS3	23	135572573	Missense_Mutation	SNP	T	TCGA-S6-A8JY-01A-11D-A435-10	34919117	135572573	19697987	75	6076											
GABRE	2564	mdanderson.org	37	chrX	151123960	151123960	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcgatatagaaatccaaGgctgtgatataggagacacg	12	6	0	3	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_004961	exon8	c.C1017A	p.A339A	ATCCAAGGCTGTG		39	3	0.08	34	0	0				5	0	0				T	151123960	G	T	151123960	2	4	88	1	0	0	0	0	0	0	0	1	6204	987	35	3		3	GABRE	23	151123960	Silent	SNP	G	TCGA-S6-A8JY-01A-11D-A435-10	15551387	151123960	4146600	76	6077											
RUNX3	864	mdanderson.org	37	chr1	25228682	25228682	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtgggtgagttgctgtgGctgccgtcggcctccacgcc	16	14	0	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001031680	exon6	c.C1221A	p.S407R	GCTGTGGCTGCCG		42	3	0.07	40	0	0				43	0	0				T	25228682	G	T	25228682	3	4	89	1	0	0	0	0	1	0	0	0	13800	1194	42	2	72	2	RUNX3	1	25228682	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10		25228682	224021939	1	6078											
IVL	3713	broad.mit.edu	37	chr1	152883011	152883011	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggggcagctggagctctcTgagcagcaggaggggcagct	19	9	1	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	IVL	NM_005547	exon2	c.T738A	p.S246S	GCTCTCTGAGCAG		76	5	0.07	65	0	0		100		0	0					A	152883011	T	A	152883011	2	1	89	1	0	0	0	0	0	0	0	1	7972	1567	55	5		5	IVL	1	152883011	Silent	SNP	T	TCGA-SB-A6J6-01A-11D-A435-10	127654329	152883011	96367610	2	6079											
THBS3	7059	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	155172077	155172077	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctggcccgggcatagtcaAtgcccacaccagacacctgt	10	15	1	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	THBS3	NM_007112	exon9	c.T1073C	p.I358T	TAGTCAATGCCCA		117	18	0.15	58	1	0.0172413793		70		18	4	0.22				G	155172077	A	G	155172077	3	3	89	1	0	0	0	0	1	0	0	0	15914	101	4	4	1857	4	THBS3	1	155172077	Missense_Mutation	SNP	A	TCGA-SB-A6J6-01A-11D-A435-10	2289066	155172077	94078544	3	6080											
GPATCH4	54865	hgsc.bcm.edu	37	chr1	156568272	156568272	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgataccattctccttccGgccgaggcctttgcctgcag	10	14	1	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_015590	exon3	c.C109A	p.R37R	CCTTCCGGCCGAG		92	4	0.04	83	0	0				212	0	0				T	156568272	G	T	156568272	2	4	89	1	0	0	0	0	0	0	0	1	6632	1115	39	1		1	GPATCH4	1	156568272	Silent	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	1396195	156568272	92682349	4	6081											
SMG7	9887	broad.mit.edu	37	chr1	183514071	183514071	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctgttttgaagggtttcCgcccccaacatatgttatcc	7	12	1	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	SMG7,colon,carcinoma,0,1	SMG7	NM_173156	exon16	c.C1994T	p.P665L	GGTTTCCGCCCCC		129	3	0.02	117	0	0		165	1	210	1	0				T	183514071	C	T	183514071	3	4	89	1	0	0	0	0	1	0	0	0	14851	652	23	1	2056	1	SMG7	1	183514071	Missense_Mutation	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10	26945799	183514071	65736550	5	6082											
C1orf65	164127	mdanderson.org	37	chr1	223566845	223566845	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttcagccacttctcccagCcgccctaccgggatctctgg	9	18	3	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_152610	exon1	c.C28T	p.P10S	TCCCAGCCGCCCT		47	3	0.06	34	0	0				0	0					T	223566845	C	T	223566845	3	4	89	1	0	0	0	0	1	0	0	0	2069	739	26	2	30	2	C1orf65	1	223566845	Missense_Mutation	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10	40052774	223566845	25683776	6	6083											
BIRC6	57448	broad.mit.edu;mdanderson.org	37	chr2	32718725	32718725	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	caagctaattcatatactttCaactgaaaggtaaatttttg	5	6	2	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	BIRC6	NM_016252	exon45	c.C8459G	p.S2820X	TACTTTCAACTGA		63	6	0.1	47	0	0		838		100	24	0.24				G	32718725	C	G	32718725	4	3	89	1	0	0	0	0	0	1	0	0	1437	838	29	5	8637	5	BIRC6	2	32718725	Nonsense_Mutation	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10		32718725	210480648	7	6084											
FASTKD1	79675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	170403079	170403079	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgtggcaaaactactcagGttatttaggtcacactgtgg	11	7	2	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_024622	exon8	c.C1350T	p.N450N	ACTCAGGTTATTT		348	44	0.13	266	0	0				70	11	0.16				A	170403079	G	A	170403079	2	1	89	1	0	0	0	0	0	0	0	1	5717	1252	44	3		3	FASTKD1	2	170403079	Silent	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	137684354	170403079	72796294	8	6085											
GAD1	2571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	171687483	171687483	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcttccggctaagaacggtGaggagcaaaccgtgcaattc	12	10	0	2	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_000817	exon5	c.G328A	p.E110K	AACGGTGAGGAGC		121	12	0.1	87	0	0				0	0					A	171687483	G	A	171687483	3	1	89	1	0	0	0	0	1	0	0	0	6213	1291	45	3	342	3	GAD1	2	171687483	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	1284404	171687483	71511890	9	6086											
STK11IP	114790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	220467428	220467428	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctccccgtctctctcagcGcctcttgtcagctctgcgtt	7	18	5	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_052902	exon7	c.G581A	p.R194H	CTCAGCGCCTCTT		195	14	0.07	118	0	0				64	8	0.13				A	220467428	G	A	220467428	3	1	89	1	0	0	0	0	1	0	0	0	15343	1101	38	1	607	1	STK11IP	2	220467428	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	48779945	220467428	22731945	10	6087											
PHLDB2	90102	broad.mit.edu	37	chr3	111603922	111603922	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctaccctcagtgtccctgCcagtccacgagtggctcgga	10	15	2	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	PHLDB2	NM_001134437	exon3	c.C1079T	p.A360V	TCCCTGCCAGTCC		158	4	0.03	102	0	0		449		10	0	0				T	111603922	C	T	111603922	3	4	89	1	0	0	0	0	1	0	0	0	11899	739	26	2	1085	2	PHLDB2	3	111603922	Missense_Mutation	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10		111603922	86418508	11	6088											
DGKQ	1609	mdanderson.org	37	chr4	961070	961070	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccagcccaggcgtcacagGcctgagaggaagggggcagc	16	14	1	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001347	exon9	c.C1067A	p.A356D	TCACAGGCCTGAG		19	2	0.11	8	0	0				6	0	0				T	961070	G	T	961070	3	4	89	1	0	0	0	0	1	0	0	0	4501	1203	42	2	1821	2	DGKQ	4	961070	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10		961070	190193206	12	6089											
RUFY3	22902	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr4	71659590	71659590	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagacaagatcaacagtctgCagctggaagtcgaggagctc	13	9	2	2	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001037442	exon13	c.C1426T	p.Q476X	AGTCTGCAGCTGG		226	23	0.1	153	0	0				42	5	0.12				T	71659590	C	T	71659590	4	4	89	1	0	0	0	0	0	1	0	0	13791	711	25	2	1919	2	RUFY3	4	71659590	Nonsense_Mutation	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10	70698520	71659590	119494686	13	6090											
ATOH1	474	broad.mit.edu	37	chr4	94750181	94750181	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgcaaccgccgccgccgcCgcagccacctgcaactttgc	9	22	0	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	ATOH1,rectum,carcinoma,0,1	ATOH1	NM_005172	exon1	c.C104A	p.P35Q	CGCCGCCGCAGCC		172	4	0.02	156	1	0.0064102564		40	1	0	0					A	94750181	C	A	94750181	3	1	89	1	0	0	0	0	1	0	0	0	1111	652	23	1	106	1	ATOH1	4	94750181	Missense_Mutation	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10	23090591	94750181	96404095	14	6091											
POU4F2	5458	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	147560512	147560512	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gaggccgaagcagcagctccAgcagcagtggcagcagcggc	16	13	0	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	POU4F2,NS,carcinoma,0,1	POU4F2	NM_004575	exon1	c.A220T	p.S74C	AGCTCCAGCAGCA		75	8	0.11	70	0	0		0	1	0	0					T	147560512	A	T	147560512	3	4	89	1	0	0	0	0	1	0	0	0	12324	188	7	5	222	5	POU4F2	4	147560512	Missense_Mutation	SNP	A	TCGA-SB-A6J6-01A-11D-A435-10	52810331	147560512	43593764	15	6092											
SRP19	7905	ucsc.edu	37	chr5	112228215	112228215	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagccctttctctgtttaaCggacgatggtatgcaggacg	12	10	1	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	SRP19	.	.	.	.	GTTTAACGGACGA		282	2	0.01	242	0	0		12		24	16	0.67	rescued with RNA-seq			T	112228215	C	T	112228215	2	4	89	1	0	0	0	0	0	0	0	1	15209	551	19	1		1	SRP19	5	112228215	Silent	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10		112228215	68687045	16	6093											
IK	3550	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140032730	140032730	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttggccccactgctgaggcGtgagtactgagggaacaggg	17	9	0	3	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	IK_ENST00000417647,NS,carcinoma,0,1	IK	NM_006083	exon5	c.404+1G>A	.	TGAGGCGTGAGTA		34	4	0.12	30	0	0		46	1	22	2	0.09				A	140032730	G	A	140032730	5	1	89	1	0	0	0	0	0	0	1	0	7651	1159	40	1	423	1	IK	5	140032730	Splice_Site	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	27804515	140032730	40882530	17	6094											
RGS14	10636	mdanderson.org	37	chr5	176793307	176793307	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctgtggccagctgggcccTgtccttcgagcggctgttgc	15	14	0	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_006480	exon3	c.T197C	p.L66P	GGGCCCTGTCCTT		49	3	0.06	59	0	0				28	0	0				C	176793307	T	C	176793307	3	2	89	1	0	0	0	0	1	0	0	0	13346	1580	55	4	207	4	RGS14	5	176793307	Missense_Mutation	SNP	T	TCGA-SB-A6J6-01A-11D-A435-10	36760577	176793307	4121953	18	6095											
TTBK1	84630	mdanderson.org	37	chr6	43251731	43251731	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggagcaagcgggctcggCcgcagcaggacctggcgcgg	20	12	0	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_032538	exon14	c.C3253T	p.P1085S	GCTCGGCCGCAGC		33	3	0.09	36	0	0				2	0	0				T	43251731	C	T	43251731	3	4	89	1	0	0	0	0	1	0	0	0	16737	739	26	2	3303	2	TTBK1	6	43251731	Missense_Mutation	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10		43251731	127863336	19	6096											
RUNX2	860	hgsc.bcm.edu	37	chr6	45390482	45390482	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agcaacagcagcagcagcagCaggaggcggcggcggcggct	18	12	0	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	RUNX2_ENST00000352853,NS,carcinoma,0,2	RUNX2_ENST00000352853	NM_001024630	exon3	c.C211G	p.Q71E	CAGCAGCAGGAGG		26	4	0.15	18	1	0.0555555556		0	2	1	0	0				G	45390482	C	G	45390482	3	3	89	1	0	0	0	0	1	0	0	0	13799	711	25	5	233	5	RUNX2	6	45390482	Missense_Mutation	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10	2138751	45390482	125724585	20	6097											
BAI3	577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	69723993	69723993	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaaaaatgggaagatgcaCaacaggtaaggttagggtta	14	3	0	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001704	exon12	c.C1993A	p.Q665K	GATGCACAACAGG		369	80	0.22	273	0	0				0	0					A	69723993	C	A	69723993	3	1	89	1	0	0	0	0	1	0	0	0	1298	479	17	3	2031	3	BAI3	6	69723993	Missense_Mutation	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10	24333511	69723993	101391074	21	6098											
COL9A1	1297	mdanderson.org	37	chr6	70978539	70978539	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	taggcctggatatcctgagcGacctggtggacaggcattgg	15	9	0	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	COL9A1_ENST00000320755,NS,carcinoma,0,2	COL9A1_ENST00000320755	NM_001851	exon17	c.C1255A	p.R419S	CTGAGCGACCTGG		47	3	0.06	36	0	0		0	2	0	0					T	70978539	G	T	70978539	3	4	89	1	0	0	0	0	1	0	0	0	3730	1058	37	1	1598	1	COL9A1	6	70978539	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	1254546	70978539	100136528	22	6099											
SLC22A16	85413	ucsc.edu	37	chr6	110752416	110752416	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgaggtccacagagaaCggcgccaggatgctggccag	15	12	0	2	rs142454497		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	SLC22A16	NM_033125	exon7	c.G1479A	p.P493P	AGAGAACGGCGCC		37	4	0.11	32	0	0		81		0	0					T	110752416	C	T	110752416	2	4	89	1	0	0	0	0	0	0	0	1	14501	523	19	1		1	SLC22A16	6	110752416	Silent	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10	39773877	110752416	60362651	23	6100											
SHPRH	257218	mdanderson.org	37	chr6	146248330	146248330	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagtctttacttacttgaaGtgaatcagttttgagttttc	7	5	2	3	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_173082	exon15	c.C3223A	p.L1075I	CTTGAAGTGAATC		47	3	0.06	29	0	0				11	0	0				T	146248330	G	T	146248330	3	4	89	1	0	0	0	0	1	0	0	0	14345	1029	36	3	1936	3	SHPRH	6	146248330	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	35495914	146248330	24866737	24	6101											
CDK14	5218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	90585027	90585027	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cacaggtcttgcaagagcaaAatccgtccctagccacacat	7	14	1	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_012395	exon8	c.A788T	p.K263I	GAGCAAAATCCGT		99	11	0.11	59	0	0				6	0	0				T	90585027	A	T	90585027	3	4	89	1	0	0	0	0	1	0	0	0	3152	14	1	5	818	5	CDK14	7	90585027	Missense_Mutation	SNP	A	TCGA-SB-A6J6-01A-11D-A435-10		90585027	68553636	25	6102											
LAMB4	22798	mdanderson.org	37	chr7	107717416	107717416	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accaggacatgtgaatgagcGtgggactctccttgcaaagg	13	9	1	2	rs144579218	alternate_allele	TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_007356	exon17	c.C2097A	p.H699Q	ATGAGCGTGGGAC		49	3	0.06	18	0	0				2	0	0				T	107717416	G	T	107717416	3	4	89	1	0	0	0	0	1	0	0	0	8651	1136	40	1	3260	1	LAMB4	7	107717416	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	17132389	107717416	51421247	26	6103											
C7orf29	113763	mdanderson.org	37	chr7	150027654	150027654	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggctgaggggttggcccGgcagctctgcaccgactgtc	16	13	1	1	rs371078860		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_138434	exon1	c.G161A	p.R54Q	TGGCCCGGCAGCT		50	3	0.06	40	0	0				29	0	0				A	150027654	G	A	150027654	3	1	89	1	0	0	0	0	1	0	0	0	2401	1116	39	1	163	1	C7orf29	7	150027654	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	42310238	150027654	9111009	27	6104											
XKR9	389668	mdanderson.org	37	chr8	71646627	71646627	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atggaaaaccagttctaagaGaatgtagaatgagatatttc	9	4	1	3	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001011720	exon5	c.G1090T	p.E364X	CTAAGAGAATGTA		49	3	0.06	29	0	0				3	0	0				T	71646627	G	T	71646627	4	4	89	1	0	0	0	0	0	1	0	0	17497	943	33	3	1100	3	XKR9	8	71646627	Nonsense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10		71646627	74717395	28	6105											
SCRIB	23513	mdanderson.org	37	chr8	144886905	144886905	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagagggcccccagcctcccGctccaacagcagggcgatgg	13	16	0	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_182706	exon21	c.C2842T	p.R948W	CCTCCCGCTCCAA		27	3	0.11	25	0	0				228	0	0				A	144886905	G	A	144886905	3	1	89	1	0	0	0	0	1	0	0	0	13990	1086	38	1	2193	1	SCRIB	8	144886905	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	73240278	144886905	1477117	29	6106											
EPPK1	83481	broad.mit.edu	37	chr8	144940690	144940690	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccacatggcctggtagatGctcatcttctcctggcggcc	10	14	3	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	EPPK1	NM_031308	exon1	c.C6732T	p.S2244S	GTAGATGCTCATC		58	4	0.07	41	1	0.0243902439		199		103	12	0.12				A	144940690	G	A	144940690	2	1	89	1	0	0	0	0	0	0	0	1	5218	1310	46	2		2	EPPK1	8	144940690	Silent	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	53785	144940690	1423332	30	6107											
OPLAH	26873	broad.mit.edu	37	chr8	145108284	145108284	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgcctggcgcccgcaggGcctccgtcaccgctggatgg	14	17	1	0	rs186909122	by1000genomes;alternate_allele	TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	OPLAH	NM_017570	exon20	c.C2699A	p.A900D	CGCAGGGCCTCCG		70	6	0.09	38	0	0		78		14	0	0				T	145108284	G	T	145108284	3	4	89	1	0	0	0	0	1	0	0	0	10923	1203	42	2	1201	2	OPLAH	8	145108284	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	167594	145108284	1255738	31	6108											
JAK2	3717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	5080316	5080316	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagacaaatggagttttgGtaccactttgtgggaaatct	10	6	1	1	rs368219482	alternate_allele	TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_004972	exon17	c.G2219T	p.G740V	GTTTTGGTACCAC		151	32	0.21	145	0	0				8	4	0.5				T	5080316	G	T	5080316	3	4	89	1	0	0	0	0	1	0	0	0	7981	1261	44	3	2277	3	JAK2	9	5080316	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10		5080316	136133115	32	6109											
GAS1	2619	mdanderson.org	37	chr9	89560990	89560990	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aggcgggccatgttctccttGaccgactcgcagatgggccg	14	13	1	2	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_002048	exon1	c.C705A	p.V235V	CTCCTTGACCGAC		17	3	0.18	17	0	0				13	0	0				T	89560990	G	T	89560990	2	4	89	1	0	0	0	0	0	0	0	1	6283	1277	45	3		3	GAS1	9	89560990	Silent	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	84480674	89560990	51652441	33	6110											
C5	727	hgsc.bcm.edu;mdanderson.org	37	chr9	123751989	123751989	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcctctgcactccctttgGggaggtgggttaggatattg	14	10	1	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001735	exon24	c.C3011A	p.P1004H	CCTTTGGGGAGGT		79	4	0.05	53	0	0				4	0	0				T	123751989	G	T	123751989	3	4	89	1	0	0	0	0	1	0	0	0	2295	1232	43	3	2091	3	C5	9	123751989	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	34190999	123751989	17461442	34	6111											
DNAJC12	56521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	69571358	69571358	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccttcgccagtggtcatagCgggctcgactctcttcattg	10	13	3	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_021800	exon3	c.G221A	p.R74H	TCATAGCGGGCTC		173	19	0.11	140	0	0				5	0	0				T	69571358	C	T	69571358	3	4	89	1	0	0	0	0	1	0	0	0	4658	768	27	1	414	1	DNAJC12	10	69571358	Missense_Mutation	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10		69571358	65963389	35	6112											
VENTX	27287	mdanderson.org	37	chr10	135051634	135051634	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgccgggtcctcaaatctGcctgcgccggagaggaccat	13	15	2	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_014468	exon1	c.G216T	p.L72L	AAATCTGCCTGCG		44	3	0.07	50	0	0				439	2	0				T	135051634	G	T	135051634	2	4	89	1	0	0	0	0	0	0	0	1	17212	1306	46	2		2	VENTX	10	135051634	Silent	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	65480276	135051634	483113	36	6113											
CHID1	66005	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	903029	903029	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctttgccgagcagtagctgCgatgctcaagaaccacactc	9	14	1	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	CHID1	NM_001142676	exon4	c.G269A	p.R90H	TAGCTGCGATGCT		52	5	0.1	40	0	0		29		227	0	0				T	903029	C	T	903029	3	4	89	1	0	0	0	0	1	0	0	0	3367	768	27	1	1031	1	CHID1	11	903029	Missense_Mutation	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10		903029	134103487	37	6114											
NAT10	55226	broad.mit.edu	37	chr11	34149080	34149080	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gattgatgaagctgccgccaTccccctccccttggtgaaga	10	14	0	4	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	NAT10	NM_024662	exon12	c.T1178C	p.I393T	CCGCCATCCCCCT		174	3	0.02	135	3	0.0222222222		78		92	0	0				C	34149080	T	C	34149080	3	2	89	1	0	0	0	0	1	0	0	0	10221	1435	50	4	1220	4	NAT10	11	34149080	Missense_Mutation	SNP	T	TCGA-SB-A6J6-01A-11D-A435-10	33246051	34149080	100857436	38	6115											
RAPSN	5913	mdanderson.org	37	chr11	47469559	47469559	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacctgccctggtaccaggCagcccaaggcaggtcttgca	12	15	1	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_005055	exon2	c.G336A	p.L112L	ACCAGGCAGCCCA		55	3	0.05	43	0	0				0	0					T	47469559	C	T	47469559	2	4	89	1	0	0	0	0	0	0	0	1	13102	697	25	2		2	RAPSN	11	47469559	Silent	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10	13320479	47469559	87536957	39	6116											
TBX10	347853	mdanderson.org	37	chr11	67399845	67399845	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gactgaggctgctgtgactcCgggctgggacactgagcagg	17	10	0	3	rs146079895		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_005995	exon7	c.G812A	p.R271Q	TGACTCCGGGCTG		38	3	0.08	35	0	0	0			2	0	0				T	67399845	C	T	67399845	3	4	89	1	0	0	0	0	1	0	0	0	15710	652	23	1	353	1	TBX10	11	67399845	Missense_Mutation	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10	19930286	67399845	67606671	40	6117											
MLL2	8085	broad.mit.edu	37	chr12	49435162	49435162	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtagacaagccggcgggggTagtggggctgccaatgaaaa	18	7	0	2	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	MLL2	NM_003482	exon31	c.A6391C	p.T2131P	CGGGGGTAGTGGG		82	16	0.2	50	12	0.24		1173		25	3	0.12				G	49435162	T	G	49435162	3	3	89	1	0	0	0	0	1	0	0	0	9668	1638	57	4	10318	4	MLL2	12	49435162	Missense_Mutation	SNP	T	TCGA-SB-A6J6-01A-11D-A435-10		49435162	84416733	41	6118											
KRT79	338785	mdanderson.org	37	chr12	53227722	53227722	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatccccccaggaggacaaGcaggcccaaacgtctgcctg	12	15	1	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_175834	exon1	c.C323A	p.A108D	GGACAAGCAGGCC		108	5	0.05	69	0	0				0	0					T	53227722	G	T	53227722	3	4	89	1	0	0	0	0	1	0	0	0	8534	971	34	2	1320	2	KRT79	12	53227722	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	3792560	53227722	80624173	42	6119											
CKAP4	10970	broad.mit.edu;mdanderson.org	37	chr12	106641269	106641269	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacgcaccagcccgagaaagCggccgccgccaccagggcga	14	17	0	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	CKAP4	NM_006825	exon1	c.G361A	p.A121T	AGAAAGCGGCCGC		22	4	0.18	13	0	0		49		111	1	0.01				T	106641269	C	T	106641269	3	4	89	1	0	0	0	0	1	0	0	0	3467	768	27	1	1455	1	CKAP4	12	106641269	Missense_Mutation	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10	53413547	106641269	27210626	43	6120											
SPERT	220082	broad.mit.edu;mdanderson.org	37	chr13	46288213	46288213	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggcccgggcctgcccgaCggctgccagcccctgcagct	15	18	0	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	SPERT	NM_152719	exon3	c.C1053T	p.D351D	GCCCGACGGCTGC		25	3	0.12	33	0	0		54		0	0					T	46288213	C	T	46288213	2	4	89	1	0	0	0	0	0	0	0	1	15094	535	19	1		1	SPERT	13	46288213	Silent	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10		46288213	68881665	44	6121											
NYNRIN	57523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	24878059	24878059	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaaggcctggaccccgggGccagcctttgggccattgtg	16	12	0	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_025081	exon4	c.G1059A	p.G353G	CCCGGGGCCAGCC		130	23	0.18	104	0	0				15	5	0.33				A	24878059	G	A	24878059	2	1	89	1	0	0	0	0	0	0	0	1	10843	1190	42	2		2	NYNRIN	14	24878059	Silent	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10		24878059	82471481	45	6122											
FOXA1	3169	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr14	38060906	38060906	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagcgccccgggcccggaGcttatggggggcgcagttga	18	13	0	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_004496	exon2	c.C1083A	p.S361R	CCCGGAGCTTATG		53	10	0.19	24	0	0				0	0					T	38060906	G	T	38060906	3	4	89	1	0	0	0	0	1	0	0	0	6021	962	34	2	339	2	FOXA1	14	38060906	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	13182847	38060906	69288634	46	6123											
SEL1L	6400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	81969081	81969081	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ttacagtctgtcccttgggaGagccttcctcagtcagcttc	9	13	3	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001244984	exon6	c.C761G	p.S254C	TTGGGAGAGCCTT		102	12	0.12	48	0	0				25	2	0.08				C	81969081	G	C	81969081	3	2	89	1	0	0	0	0	1	0	0	0	14063	942	33	5	1687	5	SEL1L	14	81969081	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	43908175	81969081	25380459	47	6124											
MEF2A	4205	hgsc.bcm.edu	37	chr15	100211846	100211846	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaatttgataatatgatgcGgaatcataaaatcgcagtga	10	4	1	3	rs75705863	bycluster	TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	MEF2A_ENST00000354410,NS,carcinoma,+1,1	MEF2A_ENST00000354410	NM_005587	exon5	c.G380A	p.R127Q	TGATGCGGAATCA		40	4	0.1	20	0	0		1	1	5	0	0				A	100211846	G	A	100211846	3	1	89	1	0	0	0	0	1	0	0	0	9504	1116	39	1	526	1	MEF2A	15	100211846	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10		100211846	2319546	48	6125											
NPW	283869	mdanderson.org	37	chr16	2070149	2070149	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acaccctctcccccgaacccGcagcccgcgaggctcctctc	7	23	2	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001099456	exon1	c.G247A	p.A83T	GAACCCGCAGCCC		16	2	0.13	9	0	0				3	0	0				A	2070149	G	A	2070149	3	1	89	1	0	0	0	0	1	0	0	0	10653	1087	38	1	249	1	NPW	16	2070149	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10		2070149	88284604	49	6126											
PKD1	5310	mdanderson.org	37	chr16	2160443	2160443	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaatagcgcacatcactGccggcctccagcgacgtgct	11	15	1	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001009944	exon15	c.C4725A	p.G1575G	ATCACTGCCGGCC		51	3	0.06	51	0	0				25	0	0				T	2160443	G	T	2160443	2	4	89	1	0	0	0	0	0	0	0	1	12010	1306	46	2		2	PKD1	16	2160443	Silent	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	90294	2160443	88194310	50	6127											
ZNF205	7755	mdanderson.org	37	chr16	3169513	3169513	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcccggagaagcccaacgaGgaggagaagggcgccccgga	17	12	0	2	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	ZNF205,NS,carcinoma,0,1	ZNF205	NM_001042428	exon7	c.G852T	p.E284D	CAACGAGGAGGAG		20	2	0.1	33	0	0		0	1	54	0	0				T	3169513	G	T	3169513	3	4	89	1	0	0	0	0	1	0	0	0	17821	991	35	3	874	3	ZNF205	16	3169513	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	1009070	3169513	87185240	51	6128											
ITPRIPL2	162073	mdanderson.org	37	chr16	19127279	19127279	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagcgcggttgctgtccaCgtggcaaaggctgccccagc	14	14	0	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001034841	exon1	c.C1496T	p.T499M	TGTCCACGTGGCA		46	3	0.07	31	0	0				29	0	0				T	19127279	C	T	19127279	3	4	89	1	0	0	0	0	1	0	0	0	7968	536	19	1	1498	1	ITPRIPL2	16	19127279	Missense_Mutation	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10	15957766	19127279	71227474	52	6129											
MYLPF	29895	broad.mit.edu	37	chr16	30389139	30389139	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caagaacatgtgggcggcctTcccccccgacgtgggcggca	14	15	0	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	MYLPF	NM_013292	exon7	c.T428C	p.F143S	CGGCCTTCCCCCC		172	5	0.03	142	0	0		12		2	0	0				C	30389139	T	C	30389139	3	2	89	1	0	0	0	0	1	0	0	0	10107	1783	62	4	454	4	MYLPF	16	30389139	Missense_Mutation	SNP	T	TCGA-SB-A6J6-01A-11D-A435-10	11261860	30389139	59965614	53	6130											
RNF40	9810	ucsc.edu	37	chr16	30778100	30778100	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaagaagctacgcacagaGgtcattcagctggaggacac	12	10	2	3	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	RNF40	NM_014771	exon11	c.G1332T	p.E444D	CACAGAGGTCATT		41	4	0.1	29	0	0		83		130	0	0				T	30778100	G	T	30778100	3	4	89	1	0	0	0	0	1	0	0	0	13544	991	35	3	1370	3	RNF40	16	30778100	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	388961	30778100	59576653	54	6131											
GFOD2	81577	mdanderson.org	37	chr16	67709571	67709571	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtcatcgctagtgacgtgCcggatgccacggatggcagc	14	11	1	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_030819	exon3	c.G645A	p.R215R	GACGTGCCGGATG		30	3	0.1	23	0	0				24	0	0				T	67709571	C	T	67709571	2	4	89	1	0	0	0	0	0	0	0	1	6385	726	26	2		2	GFOD2	16	67709571	Silent	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10	36931471	67709571	22645182	55	6132											
PRMT7	54496	broad.mit.edu	37	chr16	68358698	68358698	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggactcttgtcaatgatggCggtcacagcaggtgccgact	14	10	3	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	PRMT7,colon,carcinoma,0,1	PRMT7	NM_019023	exon5	c.C245T	p.A82V	TGATGGCGGTCAC		188	4	0.02	153	0	0		51	1	67	1	0.01				T	68358698	C	T	68358698	3	4	89	1	0	0	0	0	1	0	0	0	12592	768	27	1	255	1	PRMT7	16	68358698	Missense_Mutation	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10	649127	68358698	21996055	56	6133											
CAMKK1	84254	ucsc.edu	37	chr17	3788920	3788920	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgagtcacatcgatggctGccacccgttctaccagctct	9	14	3	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	CAMKK1	NM_032294	exon2	c.C62T	p.A21V	ATGGCTGCCACCC		43	4	0.09	33	0	0		70		6	0	0				A	3788920	G	A	3788920	3	1	89	1	0	0	0	0	1	0	0	0	2624	1319	46	2	1637	2	CAMKK1	17	3788920	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10		3788920	77406290	57	6134											
DLG4	1742	mdanderson.org	37	chr17	7100103	7100103	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atctggtcccccttccgcagCtccccactgaggtctgcagg	10	17	2	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001365	exon11	c.G1185A	p.E395E	CCGCAGCTCCCCA		38	3	0.08	41	0	0				16	0	0				T	7100103	C	T	7100103	2	4	89	1	0	0	0	0	0	0	0	1	4585	796	28	2		2	DLG4	17	7100103	Silent	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10	3311183	7100103	74095107	58	6135											
SENP3	26168	broad.mit.edu;mdanderson.org	37	chr17	7466636	7466636	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgaagaggaggaagaagaGgaggaggaggaggatgaaga	21	0	0	6	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	SENP3	NM_015670	exon2	c.G243A	p.E81E	AGAAGAGGAGGAG		94	4	0.04	75	0	0		18		124	0	0				A	7466636	G	A	7466636	2	1	89	1	0	0	0	0	0	0	0	1	14101	991	35	3		3	SENP3	17	7466636	Silent	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	366533	7466636	73728574	59	6136											
RAB34	83871	hgsc.bcm.edu	37	chr17	27041699	27041699	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcttcttgctggcagttaGgtagaggttgctgtcatcac	11	9	4	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	RAB34,NS,carcinoma,0,1	RAB34	NM_001144943	exon11	c.C913A	p.L305I	CAGTTAGGTAGAG		74	3	0.04	80	0	0		0	1	137	0	0				T	27041699	G	T	27041699	3	4	89	1	0	0	0	0	1	0	0	0	12975	991	35	3	105	3	RAB34	17	27041699	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	19575063	27041699	54153511	60	6137											
GFAP	2670	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr17	42989136	42989136	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcggagcagctccgcgttGcgggcagcagcgtctgtcag	17	12	2	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	GFAP	NM_001131019	exon5	c.C810A	p.R270R	CGCGTTGCGGGCA		41	4	0.1	33	0	0		88		0	0					T	42989136	G	T	42989136	2	4	89	1	0	0	0	0	0	0	0	1	6378	1306	46	2		2	GFAP	17	42989136	Silent	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	15947437	42989136	38206074	61	6138											
COG1	9382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	71193472	71193472	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cagaaggactgctgccagatCcagccctgccatgtggcttg	12	13	0	2	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_018714	exon4	c.C850T	p.P284S	CCAGATCCAGCCC		66	22	0.33	55	0	0				80	50	0.63				T	71193472	C	T	71193472	3	4	89	1	0	0	0	0	1	0	0	0	3680	855	30	3	864	3	COG1	17	71193472	Missense_Mutation	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10	28204336	71193472	10001738	62	6139											
KIF19	124602	mdanderson.org	37	chr17	72350514	72350514	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccacactacagcatgctgCcagtgaggacaacctgtcca	8	16	0	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_153209	exon18	c.C2522T	p.A841V	ATGCTGCCAGTGA		35	3	0.09	27	0	0				3	0	0				T	72350514	C	T	72350514	3	4	89	1	0	0	0	0	1	0	0	0	8323	739	26	2	2592	2	KIF19	17	72350514	Missense_Mutation	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10	1157042	72350514	8844696	63	6140											
UNK	85451	mdanderson.org	37	chr17	73808667	73808667	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaggagcctcggtggcaagGtacaggcatccacacctcgg	14	13	0	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001080419	exon4	c.622+1G>T	.	GGCAAGGTACAGG		50	3	0.06	43	0	0				0	0					T	73808667	G	T	73808667	5	4	89	1	0	0	0	0	0	0	1	0	17059	1275	44	3	869	3	UNK	17	73808667	Splice_Site	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	1458153	73808667	7386543	64	6141											
MBD1	4152	mdanderson.org	37	chr18	47800070	47800070	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcttcctgcttcgttggaGcctgggtatggtctggttgg	15	9	1	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001204137	exon13	c.C1385A	p.A462D	GTTGGAGCCTGGG		33	3	0.09	52	0	0				106	0	0				T	47800070	G	T	47800070	3	4	89	1	0	0	0	0	1	0	0	0	9391	971	34	2	721	2	MBD1	18	47800070	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10		47800070	30277178	65	6142											
ZNRF4	148066	mdanderson.org	37	chr19	5455516	5455516	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgacgcatgccgctctgccGtccggagcacttaatgccta	10	15	1	0	rs375127837	alternate_allele	TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_181710	exon1	c.G14T	p.R5L	TCTGCCGTCCGGA		42	3	0.07	40	0	0				0	0					T	5455516	G	T	5455516	3	4	89	1	0	0	0	0	1	0	0	0	18255	1145	40	1	16	1	ZNRF4	19	5455516	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10		5455516	53673467	66	6143											
CCDC155	147872	mdanderson.org	37	chr19	49920743	49920743	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggccccacctccagctctgCtacctccagccccctccagt	6	22	1	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_144688	exon20	c.C1665T	p.C555C	GCTCTGCTACCTC		37	3	0.08	27	0	0				10	0	0				T	49920743	C	T	49920743	2	4	89	1	0	0	0	0	0	0	0	1	2807	805	28	2		2	CCDC155	19	49920743	Silent	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10	44465227	49920743	9208240	67	6144											
SLC2A10	81031	ucsc.edu;bcgsc.ca	37	chr20	45362413	45362413	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggttcaccctgagctttggCcacaggcagaactccactgg	11	13	1	2	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	SLC2A10	NM_030777	exon5	c.C1566T	p.G522G	CTTTGGCCACAGG		37	4	0.11	53	0	0		75		28	0	0				T	45362413	C	T	45362413	2	4	89	1	0	0	0	0	0	0	0	1	14593	726	26	2		2	SLC2A10	20	45362413	Silent	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10		45362413	17663107	68	6145											
LAMA5	3911	mdanderson.org	37	chr20	60922017	60922017	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cgcaggcttccacggctgctGattgaagccggggcagcagc	15	13	0	2	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_005560	exon7	c.C1024A	p.Q342K	GCTGCTGATTGAA		39	3	0.08	58	0	0				22	0	0				T	60922017	G	T	60922017	3	4	89	1	0	0	0	0	1	0	0	0	8647	1299	45	3	10359	3	LAMA5	20	60922017	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10	15559604	60922017	2103503	69	6146											
KRTAP10-4	386672	ucsc.edu	37	chr21	45993851	45993851	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgctgcccagtgacctgCgagcccagcccctgccaatc	9	20	0	1	rs543299		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	KRTAP10-4	NM_198687	exon1	c.C216T	p.C72C	GACCTGCGAGCCC		33	9	0.27	13	2	0.1538461538		44		0	0					T	45993851	C	T	45993851	2	4	89	1	0	0	0	0	0	0	0	1	8553	776	27	1		1	KRTAP10-4	21	45993851	Silent	SNP	C	TCGA-SB-A6J6-01A-11D-A435-10		45993851	2136044	70	6147											
CARD10	29775	mdanderson.org	37	chr22	37887324	37887324	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgtgtccccactcatggGcgggcacctgcacccaggag	13	16	1	0	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_014550	exon20	c.C2972A	p.A991D	TCATGGGCGGGCA		13	2	0.15	14	0	0				94	0	0				T	37887324	G	T	37887324	3	4	89	1	0	0	0	0	1	0	0	0	2662	1203	42	2	130	2	CARD10	22	37887324	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10		37887324	13417242	71	6148											
PDHA1	5160	broad.mit.edu	37	chrX	19369427	19369427	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtgggcctggaggccgGcatcaaccccacagaccatc	12	15	1	1	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	PDHA1	NM_001173454	exon5	c.G434A	p.G145D	AGGCCGGCATCAA		429	6	0.01	265	0	0		85		171	0	0				A	19369427	G	A	19369427	3	1	89	1	0	0	0	0	1	0	0	0	11710	1203	42	2	473	2	PDHA1	23	19369427	Missense_Mutation	SNP	G	TCGA-SB-A6J6-01A-11D-A435-10		19369427	135901133	72	6149											
PARK7	11315	mdanderson.org	37	chr1	8037729	8037729	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taggtcctactgctctgttgGctcatgaaataggttttgga	11	7	2	1	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_001123377	exon6	c.G340T	p.A114S	CTGTTGGCTCATG		40	3	0.08	65	0	0				950	0	0				T	8037729	G	T	8037729	3	4	90	1	0	0	0	0	1	0	0	0	11496	1203	42	2	358	2	PARK7	1	8037729	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10		8037729	241212892	1	6150											
TMEM201	199953	mdanderson.org	37	chr1	9656058	9656058	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccactgcgagcagtacaacgGcttccaggaggtgtgggtca	14	11	1	0	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_001010866	exon2	c.G224A	p.G75D	ACAACGGCTTCCA		32	3	0.09	68	0	0				12	0	0				A	9656058	G	A	9656058	3	1	90	1	0	0	0	0	1	0	0	0	16185	1203	42	2	230	2	TMEM201	1	9656058	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	1618329	9656058	239594563	2	6151											
EPHB2	2048	mdanderson.org	37	chr1	23111037	23111037	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgtggagatgaagttttcGgtgcgtgactgcagcagcat	14	8	0	3	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_004442	exon3	c.G279T	p.S93S	GTTTTCGGTGCGT		52	3	0.06	80	0	0				5	0	0				T	23111037	G	T	23111037	2	4	90	1	0	0	0	0	0	0	0	1	5203	1103	39	1		1	EPHB2	1	23111037	Silent	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	13454979	23111037	226139584	3	6152											
PHC2	1912	mdanderson.org	37	chr1	33796984	33796984	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atggaacagaagcgcttggaAcgcttgaacttataggcaaa	11	7	0	2	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	PHC2,colon,carcinoma,-2,1	PHC2	NM_198040	exon11	c.T1968C	p.R656R	CTTGGAACGCTTG		43	3	0.07	76	0	0		-2	1	29	0	0				G	33796984	A	G	33796984	2	3	90	1	0	0	0	0	0	0	0	1	11864	30	2	4		4	PHC2	1	33796984	Silent	SNP	A	TCGA-SB-A76C-01A-11D-A435-10	10685947	33796984	215453637	4	6153											
HIAT1	64645	broad.mit.edu	37	chr1	100525455	100525455	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgttgtcattccttagtGccccgcttattggtgctctt	9	10	2	0	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	HIAT1,colon,carcinoma,-1,1	HIAT1	NM_033055	exon4	c.G265T	p.A89S	CTTAGTGCCCCGC		303	6	0.02	310	0	0		46	1	206	0	0				T	100525455	G	T	100525455	3	4	90	1	0	0	0	0	1	0	0	0	7137	1319	46	2	279	2	HIAT1	1	100525455	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	66728471	100525455	148725166	5	6154											
NRAS	4893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	115258747	115258747	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcgcttttcccaacaccaCctgctccaaccaccaccagt	5	19	0	0	rs121913237	bycluster	TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	NRAS,NS,haematopoietic_neoplasm,0,861	NRAS	NM_002524	exon2	c.G35A	p.G12D	ACACCACCTGCTC		222	38	0.17	281	0	0		0	861	64	16	0.25				T	115258747	C	T	115258747	3	4	90	1	0	0	0	0	1	0	0	0	10687	507	18	3	550	3	NRAS	1	115258747	Missense_Mutation	SNP	C	TCGA-SB-A76C-01A-11D-A435-10	14733292	115258747	133991874	6	6155											
CFHR3	10878	hgsc.bcm.edu	37	chr1	196759345	196759345	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atggagagtggtcggaaccaCcaagatgcatacgtaagttc	12	8	0	2	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	CFHR3,brain,primitive_neuroectodermal_tumour-medulloblastoma,-2,1	CFHR3	NM_021023	exon5	c.C784A	p.P262T	GAACCACCAAGAT		345	17	0.05	466	0	0		-2	1	0	0					A	196759345	C	A	196759345	3	1	90	1	0	0	0	0	1	0	0	0	3308	507	18	3	802	3	CFHR3	1	196759345	Missense_Mutation	SNP	C	TCGA-SB-A76C-01A-11D-A435-10	81500598	196759345	52491276	7	6156											
CFHR4	10877	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	196884256	196884256	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atggagagtggtcggaaccaCcaagatgcatacgtaagttc	12	8	0	2	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	CFHR4_ENST00000367416,right_lower_lobe,carcinoma,-1,2	CFHR4_ENST00000367416	NM_001201550	exon9	c.C1528A	p.P510T	GAACCACCAAGAT		699	93	0.13	881	0	0		-1	2	0	0					A	196884256	C	A	196884256	3	1	90	1	0	0	0	0	1	0	0	0	3309	507	18	3	805	3	CFHR4	1	196884256	Missense_Mutation	SNP	C	TCGA-SB-A76C-01A-11D-A435-10	124911	196884256	52366365	8	6157											
PIK3C2B	5287	broad.mit.edu	37	chr1	204401431	204401431	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgggaggcaaaggagaggGtcagccggtcatctgagccc	16	10	3	2	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	PIK3C2B	NM_002646	exon28	c.C4052A	p.T1351N	GAGAGGGTCAGCC		154	6	0.04	178	0	0		142		43	0	0				T	204401431	G	T	204401431	3	4	90	1	0	0	0	0	1	0	0	0	11957	1261	44	3	880	3	PIK3C2B	1	204401431	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	7517175	204401431	44849190	9	6158											
NUCKS1	64710	bcgsc.ca	37	chr1	205688682	205688686	+	Frame_Shift_Del	DEL	TTTTC	TTTTC	-													ctttagtctgggtttgggcaTtttcttttcttttctttcag					novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	TTTTC	TTTTC					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	NUCKS1	NM_022731	exon6	c.501_505del	p.167_169del	TGGGCATTTTCTT		244	5	0.02	276	1	0.0036231884		28		311	0	0				-	205688686	TTTTC	-	205688682	7	5	90	1	0	1	0	1	0	0	0	0	10767	1493	52	0	234	0	NUCKS1	1	205688682	Frame_Shift_Del	DEL	TTTTC	TCGA-SB-A76C-01A-11D-A435-10	1287251	205688682	43561939	10	6159											
SMYD2	56950	mdanderson.org	37	chr1	214491483	214491483	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgaaggagtttgaatcacGtaagtctttctgtgaccagc	11	7	3	3	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_020197	exon4	c.409+1G>T	.	AATCACGTAAGTC		51	3	0.06	62	0	0				0	0					T	214491483	G	T	214491483	5	4	90	1	0	0	0	0	0	0	1	0	14875	1159	40	1	424	1	SMYD2	1	214491483	Splice_Site	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	8802801	214491483	34759138	11	6160											
OTOF	9381	mdanderson.org	37	chr2	26690000	26690000	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatgcgctcctcctcggtGgagccatcctcatcatcccc	7	18	2	0	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_194248	exon35	c.C4329A	p.S1443S	CTCGGTGGAGCCA		35	3	0.09	30	1	0.0333333333				4	0	0				T	26690000	G	T	26690000	2	4	90	1	0	0	0	0	0	0	0	1	11349	1335	47	3		3	OTOF	2	26690000	Silent	SNP	G	TCGA-SB-A76C-01A-11D-A435-10		26690000	216509373	12	6161											
COL5A2	1290	mdanderson.org	37	chr2	189927992	189927992	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacggccatcttcccctggcGcaccctatagaattgacagg	10	14	1	2	rs145169816	bycluster;by1000genomes;alternate_allele	TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	COL5A2,NS,carcinoma,+1,2	COL5A2	NM_000393	exon27	c.C1775T	p.A592V	CCTGGCGCACCCT		38	3	0.08	32	0	0		1	2	14	0	0				A	189927992	G	A	189927992	3	1	90	1	0	0	0	0	1	0	0	0	3720	1087	38	1	2836	1	COL5A2	2	189927992	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	163237992	189927992	53271381	13	6162											
ADAMTS9	56999	mdanderson.org	37	chr3	64633628	64633628	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacttgcctttccaggctcGcactccgtcccatcggccca	7	18	0	0	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_182920	exon11	c.C1698T	p.C566C	AGGCTCGCACTCC		41	3	0.07	64	0	0				0	0					A	64633628	G	A	64633628	2	1	90	1	0	0	0	0	0	0	0	1	272	1079	38	1		1	ADAMTS9	3	64633628	Silent	SNP	G	TCGA-SB-A76C-01A-11D-A435-10		64633628	133388802	14	6163											
LRIT3	345193	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	110788886	110788886	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	accctgctatagtgcttctgGatccactgatgacttgcagt	9	11	1	2	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_198506	exon3	c.G679T	p.D227Y	CTTCTGGATCCAC		82	6	0.07	157	0	0				0	0					T	110788886	G	T	110788886	3	4	90	1	0	0	0	0	1	0	0	0	8993	1174	41	3	550	3	LRIT3	4	110788886	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10		110788886	80365390	15	6164											
PCDHA6	56142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140208298	140208298	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acagagaggaagctcctgcaCacaacttattcctgacagcc	8	13	0	2	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_018909	exon1	c.C622T	p.H208Y	CCTGCACACAACT		119	26	0.22	161	0	0				1	1	1				T	140208298	C	T	140208298	3	4	90	1	0	0	0	0	1	0	0	0	11574	478	17	3	624	3	PCDHA6	5	140208298	Missense_Mutation	SNP	C	TCGA-SB-A76C-01A-11D-A435-10		140208298	40706962	16	6165											
PPP2R2B	5521	hgsc.bcm.edu	37	chr5	146017851	146017851	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagggcagatgcccgcatGtcacacagccggattgtccc	11	15	1	1	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_181675	exon7	c.C1071A	p.D357E	CCGCATGTCACAC		89	4	0.04	117	0	0				2	0	0				T	146017851	G	T	146017851	3	4	90	1	0	0	0	0	1	0	0	0	12433	1368	48	3	594	3	PPP2R2B	5	146017851	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	5809553	146017851	34897409	17	6166											
F12	2161	bcgsc.ca;mdanderson.org	37	chr5	176836088	176836088	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtacttatgctccttggggGcttcccaaggtggaatctac	11	10	1	0	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	F12	NM_000505	exon2	c.C74A	p.A25D	TTGGGGGCTTCCC		65	5	0.08	110	0	0		35		0	0					T	176836088	G	T	176836088	3	4	90	1	0	0	0	0	1	0	0	0	5367	1203	42	2	1825	2	F12	5	176836088	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	30818237	176836088	4079172	18	6167											
BTN2A2	10385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	26385530	26385530	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggagaatgggatctacCgctgttacttccaagaaggc	11	11	1	2	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	BTN2A2_ENST00000432533,colon,carcinoma,-1,2	BTN2A2_ENST00000432533	NM_001197238	exon3	c.C382A	p.R128S	ATCTACCGCTGTT		117	22	0.19	128	0	0		-1	2	6	1	0.17				A	26385530	C	A	26385530	3	1	90	1	0	0	0	0	1	0	0	0	1564	652	23	1	388	1	BTN2A2	6	26385530	Missense_Mutation	SNP	C	TCGA-SB-A76C-01A-11D-A435-10		26385530	144729537	19	6168											
PPP2R5D	5528	broad.mit.edu	37	chr6	42974822	42974822	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtgatgttgtcactgagGccatttaccctgaggctgtc	12	11	1	3	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	PPP2R5D	NM_006245	exon4	c.G496T	p.A166S	ACTGAGGCCATTT		91	4	0.04	137	0	0		47		100	0	0				T	42974822	G	T	42974822	3	4	90	1	0	0	0	0	1	0	0	0	12443	1203	42	2	510	2	PPP2R5D	6	42974822	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	16589292	42974822	128140245	20	6169											
MTO1	25821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	74171583	74171583	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gatttttctcccagcatgttCtacttccgaggctgtggccg	10	12	2	0	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_133645	exon1	c.C6G	p.F2L	CATGTTCTACTTC		181	43	0.24	242	0	0				48	18	0.38				G	74171583	C	G	74171583	3	3	90	1	0	0	0	0	1	0	0	0	10000	912	32	5	8	5	MTO1	6	74171583	Missense_Mutation	SNP	C	TCGA-SB-A76C-01A-11D-A435-10	31196761	74171583	96943484	21	6170											
AQP1	358	broad.mit.edu	37	chr7	30963100	30963100	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattcatcgggggagccctGgctgtactcatctacgactt	10	13	3	0	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	AQP1	NM_198098	exon4	c.G666T	p.L222L	AGCCCTGGCTGTA		213	4	0.02	154	0	0		38		94	0	0				T	30963100	G	T	30963100	2	4	90	1	0	0	0	0	0	0	0	1	818	1335	47	3		3	AQP1	7	30963100	Silent	SNP	G	TCGA-SB-A76C-01A-11D-A435-10		30963100	128175563	22	6171											
DDC	1644	mdanderson.org	37	chr7	50544328	50544328	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatctcccacttacccggtaGtcagtgataagccctggaga	9	12	2	2	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_001082971	exon11	c.C1035A	p.D345E	CCGGTAGTCAGTG		40	3	0.08	31	0	0				0	0					T	50544328	G	T	50544328	3	4	90	1	0	0	0	0	1	0	0	0	4348	1020	36	3	423	3	DDC	7	50544328	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	19581228	50544328	108594335	23	6172											
SCARA5	286133	mdanderson.org	37	chr8	27779486	27779486	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcgctctgctggcccgtgCggtcccgcagcagggccacc	14	17	1	0	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_173833	exon4	c.G518A	p.R173H	CCCGTGCGGTCCC		17	3	0.18	22	0	0				0	0					T	27779486	C	T	27779486	3	4	90	1	0	0	0	0	1	0	0	0	13932	768	27	1	993	1	SCARA5	8	27779486	Missense_Mutation	SNP	C	TCGA-SB-A76C-01A-11D-A435-10		27779486	118584536	24	6173											
OTUD6B	51633	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	92096281	92096284	+	Frame_Shift_Del	DEL	CAGG	CAGG	-													aaacaccaatagagataataCaggcagattctcctcccatt					novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	CAGG	CAGG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	OTUD6B	NM_016023	exon6	c.825_828del	p.275_276del	ATAATACAGGCAG		320	0	0	332	0	0		28		36	0	0				-	92096284	CAGG	-	92096281	7	5	90	1	0	1	0	1	0	0	0	0	11363	479	17	0	848	0	OTUD6B	8	92096281	Frame_Shift_Del	DEL	CAGG	TCGA-SB-A76C-01A-11D-A435-10	64316795	92096281	54267741	25	6174											
RBM12B	389677	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	94746362	94746362	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccgcctgaagtgctctggGggtggccgccggaagtgctc	18	12	1	1	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	RBM12B	NM_203390	exon3	c.C2277A	p.P759P	CTCTGGGGGTGGC		76	5	0.07	93	0	0		78		67	0	0				T	94746362	G	T	94746362	2	4	90	1	0	0	0	0	0	0	0	1	13165	1219	43	3		3	RBM12B	8	94746362	Silent	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	2650081	94746362	51617660	26	6175											
COL14A1	7373	broad.mit.edu	37	chr8	121219207	121219207	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccatgccatcactgggccGcctacggagttgattacttc	10	14	1	1	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	COL14A1	NM_021110	exon10	c.G1065T	p.P355P	TGGGCCGCCTACG		130	5	0.04	116	0	0		292		5	0	0				T	121219207	G	T	121219207	2	4	90	1	0	0	0	0	0	0	0	1	3694	1074	38	1		1	COL14A1	8	121219207	Silent	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	26472845	121219207	25144815	27	6176											
PCSK5	5125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr9	78973480	78973480	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctgcaactgagcatttcaAgacagctctgttcatcacct	7	13	4	2	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_001190482	exon37	c.A5225G	p.K1742R	ATTTCAAGACAGC		259	12	0.05	301	0	0				4	0	0				G	78973480	A	G	78973480	3	3	90	1	0	0	0	0	1	0	0	0	11649	87	3	4		4	PCSK5	9	78973480	Missense_Mutation	SNP	A	TCGA-SB-A76C-01A-11D-A435-10		78973480	62239951	28	6177											
CENPP	401541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	95094481	95094481	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaagccatacaccaattcaAtttggaaggatggaagtctt	8	8	3	0	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_001012267	exon2	c.A137G	p.N46S	AATTCAATTTGGA		165	27	0.16	202	0	0				23	8	0.35				G	95094481	A	G	95094481	3	3	90	1	0	0	0	0	1	0	0	0	3262	101	4	4	143	4	CENPP	9	95094481	Missense_Mutation	SNP	A	TCGA-SB-A76C-01A-11D-A435-10	16121001	95094481	46118950	29	6178											
DNM1	1759	mdanderson.org	37	chr9	130965862	130965862	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgcagatcgctgtggtggGcggccagagcgccggcaaga	18	12	0	3	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	.	.	.	.	TGGTGGGCGGCCA		29	3	0.1	31	0	0				8	0	0				T	130965862	G	T	130965862	3	4	90	1	0	0	0	0	1	0	0	0	4697	1203	42	2	115	2	DNM1	9	130965862	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	35871381	130965862	10247569	30	6179											
CARD9	64170	mdanderson.org	37	chr9	139262098	139262098	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaggcccaccaggacgagCgtctccagctgctgccgcct	11	19	1	0	rs142757984		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_052813	exon8	c.G1260A	p.T420T	GACGAGCGTCTCC		30	3	0.1	17	0	0	0			1	0	0				T	139262098	C	T	139262098	2	4	90	1	0	0	0	0	0	0	0	1	2670	755	27	1		1	CARD9	9	139262098	Silent	SNP	C	TCGA-SB-A76C-01A-11D-A435-10	8296236	139262098	1951333	31	6180											
MCM10	55388	mdanderson.org	37	chr10	13240709	13240709	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggatgaattggagcctGccaggaaaaaaaggagagaa	14	5	0	3	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_182751	exon16	c.G2143T	p.A715S	GAGCCTGCCAGGA		29	3	0.1	43	0	0				34	0	0				T	13240709	G	T	13240709	3	4	90	1	0	0	0	0	1	0	0	0	9434	1319	46	2	2201	2	MCM10	10	13240709	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10		13240709	122294038	32	6181											
FRMPD2	143162	mdanderson.org	37	chr10	49409307	49409307	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctgcccagagcccatctGtgcattaaacccatgctggg	11	13	1	1	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_001018071	exon15	c.C1918A	p.Q640K	CCATCTGTGCATT		63	4	0.06	99	0	0				0	0					T	49409307	G	T	49409307	3	4	90	1	0	0	0	0	1	0	0	0	6092	1386	48	3	2071	3	FRMPD2	10	49409307	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	36168598	49409307	86125440	33	6182											
BTRC	8945	broad.mit.edu	37	chr10	103221770	103221770	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agagaagactgtaataatggCgaaccccctaggaagataat	10	7	0	3	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	BTRC	NM_033637	exon3	c.C189T	p.G63G	TAATGGCGAACCC		179	6	0.03	178	0	0		64		82	0	0				T	103221770	C	T	103221770	2	4	90	1	0	0	0	0	0	0	0	1	1572	755	27	1		1	BTRC	10	103221770	Silent	SNP	C	TCGA-SB-A76C-01A-11D-A435-10	53812463	103221770	32312977	34	6183											
PSD	5662	mdanderson.org	37	chr10	104176225	104176225	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccagcccattggggagagAggagtaaaggccatctgctc	13	12	1	1	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_001270965	exon3	c.T571C	p.S191P	GGAGAGAGGAGTA		52	3	0.06	66	0	0				2	0	0				G	104176225	A	G	104176225	3	3	90	1	0	0	0	0	1	0	0	0	12694	304	11	4	2567	4	PSD	10	104176225	Missense_Mutation	SNP	A	TCGA-SB-A76C-01A-11D-A435-10	954455	104176225	31358522	35	6184											
MUC15	143662	mdanderson.org	37	chr11	26587436	26587436	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tttggtattggtttttttttAaaggaatctgaaagaaaata	8	1	1	2	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_001135092	exon3	c.T51A	p.F17L	TTTTTTAAAGGAA		45	3	0.07	63	0	0				0	0					T	26587436	A	T	26587436	3	4	90	1	0	0	0	0	1	0	0	0	10019	359	13	5	1046	5	MUC15	11	26587436	Missense_Mutation	SNP	A	TCGA-SB-A76C-01A-11D-A435-10		26587436	108419080	36	6185											
DAK	26007	mdanderson.org	37	chr11	61113862	61113862	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccaccaagaatatggaaGctggagccggaagagccagt	14	9	0	2	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_015533	exon18	c.G1615T	p.A539S	ATGGAAGCTGGAG		33	3	0.09	44	0	0				47	0	0				T	61113862	G	T	61113862	3	4	90	1	0	0	0	0	1	0	0	0	4252	971	34	2	1681	2	DAK	11	61113862	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	34526426	61113862	73892654	37	6186											
SSH3	54961	mdanderson.org	37	chr11	67074580	67074580	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cccaggtgtacttagatggaGacgggtaagcaatggcaact	13	8	0	2	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_017857	exon5	c.G532T	p.D178Y	GATGGAGACGGGT		27	3	0.11	26	0	0				2	0	0				T	67074580	G	T	67074580	3	4	90	1	0	0	0	0	1	0	0	0	15241	942	33	3	550	3	SSH3	11	67074580	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	5960718	67074580	67931936	38	6187											
FAT3	120114	mdanderson.org	37	chr11	92577510	92577510	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgaaaatgtgtcccctgaGgacttcgtggggctgcacat	12	9	0	2	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_001008781	exon18	c.G10977T	p.E3659D	CCCTGAGGACTTC		32	3	0.09	98	0	0				0	0					T	92577510	G	T	92577510	3	4	90	1	0	0	0	0	1	0	0	0	5723	991	35	3	11047	3	FAT3	11	92577510	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	25502930	92577510	42429006	39	6188											
GRIA4	2893	mdanderson.org	37	chr11	105481779	105481779	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctggattttggggactcGccatgggagcctttccgagc	13	10	1	0	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	GRIA4_ENST00000393127,NS,carcinoma,0,3	GRIA4_ENST00000393127	NM_001077243	exon2	c.G55T	p.A19S	GGACTCGCCATGG		60	3	0.05	142	1	0.0070422535		0	3	0	0					T	105481779	G	T	105481779	3	4	90	1	0	0	0	0	1	0	0	0	6810	1087	38	1	57	1	GRIA4	11	105481779	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	12904269	105481779	29524737	40	6189											
KRAS	3845	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529	bycluster	TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	KRAS_ENST00000256078,NS,adenocarcinoma,0,25136	KRAS	NM_004985	exon2	c.G35C	p.G12A	ACGCCACCAGCTC		361	10	0.03	279	0	0		30930	25136	54	0	0				G	25398284	C	G	25398284	3	3	90	1	0	0	0	0	1	0	0	0	8480	507	18	5	671	5	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-SB-A76C-01A-11D-A435-10		25398284	108453611	41	6190											
SOAT2	8435	mdanderson.org	37	chr12	53497424	53497424	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctgggaggggagcgggaGcgccaaccctgtggagatgg	22	8	0	1	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_003578	exon1	c.G63T	p.E21D	GCGGGAGCGCCAA		27	3	0.11	25	0	0				0	0					T	53497424	G	T	53497424	3	4	90	1	0	0	0	0	1	0	0	0	14964	962	34	2	65	2	SOAT2	12	53497424	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	28099140	53497424	80354471	42	6191											
SLC24A6	80024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	113770646	113770646	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttagcagcacacaaagcacaCtcagtgcccagcgcagattc	8	14	1	1	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_024959	exon2	c.G38A	p.S13N	AGCACACTCAGTG		69	20	0.29	80	0	0				48	13	0.27				T	113770646	C	T	113770646	3	4	90	1	0	0	0	0	1	0	0	0	14524	565	20	3	1776	3	SLC24A6	12	113770646	Missense_Mutation	SNP	C	TCGA-SB-A76C-01A-11D-A435-10	60273222	113770646	20081249	43	6192											
TPTE2	93492	bcgsc.ca	37	chr13	20056686	20056686	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttggaaagtcgttctaacaTactttagccaccaaaaaaaa	5	9	1	0	rs201542496		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	TPTE2	NM_199254	exon5	c.A121G	p.M41V	CTAACATACTTTA		510	15	0.03	688	6	0.0087209302		225		2	0	0				C	20056686	T	C	20056686	3	2	90	1	0	0	0	0	1	0	0	0	16491	1420	49	4	1515	4	TPTE2	13	20056686	Missense_Mutation	SNP	T	TCGA-SB-A76C-01A-11D-A435-10		20056686	95113192	44	6193											
ATP11A	23250	mdanderson.org	37	chr13	113526062	113526062	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caaacagatatttggaaactGgacgtttggaacgctggtat	11	6	0	1	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_032189	exon26	c.G3005T	p.W1002L	GAAACTGGACGTT		49	3	0.06	107	0	0				9	0	0				T	113526062	G	T	113526062	3	4	90	1	0	0	0	0	1	0	0	0	1118	1357	47	3	3107	3	ATP11A	13	113526062	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	93469376	113526062	1643816	45	6194											
ZFYVE21	79038	mdanderson.org	37	chr14	104182264	104182264	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catggtgcccgaacaccgcgCcttcggaagcccgttcggcc	12	17	0	0	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_024071	exon1	c.C86T	p.A29V	ACCGCGCCTTCGG		19	3	0.16	27	0	0				369	0	0				T	104182264	C	T	104182264	3	4	90	1	0	0	0	0	1	0	0	0	17724	739	26	2	88	2	ZFYVE21	14	104182264	Missense_Mutation	SNP	C	TCGA-SB-A76C-01A-11D-A435-10		104182264	3167276	46	6195											
ELL3	80237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	44066684	44066684	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aggaactcacaggaggtagtCtggtatatcttcaggacttg	12	7	4	0	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_025165	exon8	c.G856A	p.D286N	GGTAGTCTGGTAT		168	38	0.23	175	0	0				3	0	0				T	44066684	C	T	44066684	3	4	90	1	0	0	0	0	1	0	0	0	5092	913	32	3	353	3	ELL3	15	44066684	Missense_Mutation	SNP	C	TCGA-SB-A76C-01A-11D-A435-10		44066684	58464708	47	6196											
ISLR2	57611	mdanderson.org	37	chr15	74426776	74426776	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttccgcggcctgcggccgGgtaccaactactccgtgtgc	14	15	0	0	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_001130136	exon4	c.G1681T	p.G561C	CGGCCGGGTACCA		56	4	0.07	64	0	0				1	0	0				T	74426776	G	T	74426776	3	4	90	1	0	0	0	0	1	0	0	0	7902	1232	43	3	1683	3	ISLR2	15	74426776	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	30360092	74426776	28104616	48	6197											
WDR90	197335	mdanderson.org	37	chr16	717445	717445	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacagagtgcatgctgagGctggtagactgtgccatggg	15	10	0	3	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_145294	exon41	c.G5103T	p.R1701S	GCTGAGGCTGGTA		43	3	0.07	62	0	0				19	0	0				T	717445	G	T	717445	3	4	90	1	0	0	0	0	1	0	0	0	17396	1194	42	2	5265	2	WDR90	16	717445	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10		717445	89637308	49	6198											
ZSCAN10	84891	mdanderson.org	37	chr16	3142569	3142569	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccgcgtggctgggctcccGgtggatgccctcgagcagca	15	16	0	0	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_032805	exon1	c.C205T	p.R69W	GCTCCCGGTGGAT		19	2	0.11	38	1	0.0263157895				15	0	0				A	3142569	G	A	3142569	3	1	90	1	0	0	0	0	1	0	0	0	18268	1115	39	1	1992	1	ZSCAN10	16	3142569	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	2425124	3142569	87212184	50	6199											
FUS	2521	broad.mit.edu;bcgsc.ca	37	chr16	31202397	31202398	+	Frame_Shift_Del	DEL	AG	AG	-													ggggccggggtggtggggacAgaggtggctttggccctggc					novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	AG	AG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	FUS	NM_004960	exon14	c.1507_1508del	p.503_503del	GGGGACAGAGGTG		34	9	0.26	60	0	0		52		100	0	0				-	31202398	AG	-	31202397	7	5	90	1	0	1	0	1	0	0	0	0	6134	180	7	0	1561	0	FUS	16	31202397	Frame_Shift_Del	DEL	AG	TCGA-SB-A76C-01A-11D-A435-10	28059828	31202397	59152356	51	6200											
TGFB1I1	7041	mdanderson.org	37	chr16	31484834	31484834	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctcccaaagagcgccctgCggagcctctcacccctcccc	9	21	1	1	rs142826505	byfrequency	TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_001042454	exon2	c.C86T	p.A29V	GCCCTGCGGAGCC		39	3	0.08	59	0	0	0			18	0	0				T	31484834	C	T	31484834	3	4	90	1	0	0	0	0	1	0	0	0	15876	768	27	1	92	1	TGFB1I1	16	31484834	Missense_Mutation	SNP	C	TCGA-SB-A76C-01A-11D-A435-10	282437	31484834	58869919	52	6201											
CDH16	1014	mdanderson.org	37	chr16	66949135	66949135	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcttacccttggggctgaGggccagagcccccagccgag	16	14	0	2	rs2271024	byfrequency;byhapmap;alternate_allele	TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_004062	exon6	c.C571A	p.L191I	GGCTGAGGGCCAG		31	3	0.1	44	0	0				0	0					T	66949135	G	T	66949135	3	4	90	1	0	0	0	0	1	0	0	0	3123	1000	35	3	1970	3	CDH16	16	66949135	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	35464301	66949135	23405618	53	6202											
FBXO31	79791	mdanderson.org	37	chr16	87369022	87369022	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttgatgaggtcgtcggggCggctgggcggcaggtagatg	21	7	0	3	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	FBXO31_ENST00000311635,NS,carcinoma,-1,2	FBXO31_ENST00000311635	NM_024735	exon7	c.G884A	p.R295H	TCGGGGCGGCTGG		43	3	0.07	112	0	0		-1	2	63	0	0				T	87369022	C	T	87369022	3	4	90	1	0	0	0	0	1	0	0	0	5773	768	27	1	747	1	FBXO31	16	87369022	Missense_Mutation	SNP	C	TCGA-SB-A76C-01A-11D-A435-10	20419887	87369022	2985731	54	6203											
SGK494	0	mdanderson.org	37	chr17	26941125	26941125	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtgagggacagccacccGggtgtgttccccctgctggg	15	13	0	1	rs143987420	alternate_allele	TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_001174103	exon1	c.C55A	p.R19R	CCACCCGGGTGTG		33	3	0.09	48	0	0				41	0	0				T	26941125	G	T	26941125	2	4	90	1	0	0	0	0	0	0	0	1	14266	1115	39	1		1	SGK494	17	26941125	Silent	SNP	G	TCGA-SB-A76C-01A-11D-A435-10		26941125	54254085	55	6204											
TTYH2	94015	mdanderson.org	37	chr17	72218737	72218737	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggacgatgcggtgcagacCaagcagcaccactcctgctg	13	14	0	1	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_032646	exon2	c.C243A	p.T81T	GCAGACCAAGCAG		37	3	0.08	48	0	0				16	0	0				A	72218737	C	A	72218737	2	1	90	1	0	0	0	0	0	0	0	1	16801	581	21	3		3	TTYH2	17	72218737	Silent	SNP	C	TCGA-SB-A76C-01A-11D-A435-10	45277612	72218737	8976473	56	6205											
KCTD2	23510	mdanderson.org	37	chr17	73043556	73043556	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcagggggcggcggcgcgGcccgctgggtcaggctgaac	22	12	1	1	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_015353	exon1	c.G211A	p.A71T	GGCGCGGCCCGCT		22	3	0.14	25	0	0				18	0	0				A	73043556	G	A	73043556	3	1	90	1	0	0	0	0	1	0	0	0	8150	1203	42	2	213	2	KCTD2	17	73043556	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	824819	73043556	8151654	57	6206											
PLIN3	10226	broad.mit.edu	37	chr19	4839419	4839419	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaggtcctccacctggcGgcgggcctgctgcacctggt	15	15	0	0	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	PLIN3	NM_005817	exon8	c.C1090A	p.R364S	CCTGGCGGCGGGC		113	4	0.04	125	0	0		36		193	0	0				T	4839419	G	T	4839419	3	4	90	1	0	0	0	0	1	0	0	0	12138	1116	39	1	218	1	PLIN3	19	4839419	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10		4839419	54289564	58	6207											
ZNF763	284390	mdanderson.org	37	chr19	12089265	12089265	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agaaaccctatgcttgtaaaGaatgtggaaaaacctttatt	7	6	0	2	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	ZNF763,NS,carcinoma,0,2	ZNF763	NM_001012753	exon4	c.G535T	p.E179X	TGTAAAGAATGTG		100	5	0.05	122	0	0		0	2	4	0	0				T	12089265	G	T	12089265	4	4	90	1	0	0	0	0	0	1	0	0	18186	943	33	3	549	3	ZNF763	19	12089265	Nonsense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	7249846	12089265	47039718	59	6208											
FCGBP	8857	mdanderson.org	37	chr19	40421328	40421328	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgggtccccggacccctGgcaggtcccgaagcgatcgg	16	14	0	0	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_003890	exon5	c.C2593A	p.Q865K	ACCCCTGGCAGGT		53	3	0.06	77	0	0				4	0	0				T	40421328	G	T	40421328	3	4	90	1	0	0	0	0	1	0	0	0	5810	1357	47	3	13752	3	FCGBP	19	40421328	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	28332063	40421328	18707655	60	6209											
CEACAM5	1048	mdanderson.org	37	chr19	42212685	42212685	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcccctccccacagatggtGcatcccctggcagaggctcc	11	18	0	2	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_004363	exon1	c.G35A	p.C12Y	GATGGTGCATCCC		37	3	0.08	66	0	0				0	0					A	42212685	G	A	42212685	3	1	90	1	0	0	0	0	1	0	0	0	3217	1319	46	2	37	2	CEACAM5	19	42212685	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	1791357	42212685	16916298	61	6210											
ZNF649	65251	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	52394804	52394804	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgtatgaattctcttatgCtcagtgagctgagacttctt	8	9	3	3	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	ZNF649	NM_023074	exon5	c.G585A	p.E195E	CTTATGCTCAGTG		167	38	0.23	234	1	0.0042735043		72		90	34	0.38				T	52394804	C	T	52394804	2	4	90	1	0	0	0	0	0	0	0	1	18120	796	28	2		2	ZNF649	19	52394804	Silent	SNP	C	TCGA-SB-A76C-01A-11D-A435-10	10182119	52394804	6734179	62	6211											
ZNF836	162962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	52658148	52658148	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tttgaacccagaagttaggaGaacatctaaaggcttttcca	8	8	1	3	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_001102657	exon5	c.C2788G	p.L930V	TTAGGAGAACATC		94	22	0.23	112	0	0				25	14	0.56				C	52658148	G	C	52658148	3	2	90	1	0	0	0	0	1	0	0	0	18233	942	33	5	24	5	ZNF836	19	52658148	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	263344	52658148	6470835	63	6212											
ZNF776	284309	mdanderson.org	37	chr19	58265468	58265468	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	aaagaccttatgaatgtgacGaatgtgggaaatcttttagc	10	5	1	3	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_173632	exon3	c.G970T	p.E324X	TGTGACGAATGTG		52	3	0.06	81	0	0				42	0	0				T	58265468	G	T	58265468	4	4	90	1	0	0	0	0	0	1	0	0	18197	1059	37	1	980	1	ZNF776	19	58265468	Nonsense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	5607320	58265468	863515	64	6213											
CPXM1	56265	mdanderson.org	37	chr20	2781176	2781176	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcccccagagccgggccgaCggccggcgcgaaggcggcca	17	18	0	1	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_001184699	exon1	c.G43A	p.V15I	GGCCGACGGCCGG		10	2	0.2	14	0	0				9	0	0				T	2781176	C	T	2781176	3	4	90	1	0	0	0	0	1	0	0	0	3860	536	19	1	2217	1	CPXM1	20	2781176	Missense_Mutation	SNP	C	TCGA-SB-A76C-01A-11D-A435-10		2781176	60244344	65	6214											
KCNS1	3787	mdanderson.org	37	chr20	43726516	43726516	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagcgggtggcagaagaaGttgcgcgtactgggcgccag	18	8	0	3	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_002251	exon4	c.C897A	p.N299K	GAAGAAGTTGCGC		39	3	0.08	53	0	0				19	0	0				T	43726516	G	T	43726516	3	4	90	1	0	0	0	0	1	0	0	0	8131	1020	36	3	691	3	KCNS1	20	43726516	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	40945340	43726516	19299004	66	6215											
NCOA5	57727	mdanderson.org	37	chr20	44690957	44690957	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcagtaatgcctctggtaAgatcccatgggggcctgtgg	13	10	2	1	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_020967	exon8	c.T1722C	p.S574S	CTGGTAAGATCCC		51	3	0.06	63	0	0				120	0	0				G	44690957	A	G	44690957	2	3	90	1	0	0	0	0	0	0	0	1	10278	59	3	4		4	NCOA5	20	44690957	Silent	SNP	A	TCGA-SB-A76C-01A-11D-A435-10	964441	44690957	18334563	67	6216											
ADARB1	104	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr21	46604964	46604964	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgggacggggtgctgcaagGggagcggctgctcaccatgt	19	9	1	0	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	ADARB1	NM_015834	exon9	c.G1643C	p.G548A	TGCAAGGGGAGCG		101	5	0.05	77	0	0		81		7	0	0				C	46604964	G	C	46604964	3	2	90	1	0	0	0	0	1	0	0	0	281	1232	43	5	1669	5	ADARB1	21	46604964	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10		46604964	1524931	68	6217											
CSF2RB	1439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	37326718	37326718	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgctgtgctcctcagggaGgaagagtgctccccagtgct	13	12	2	1	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_000395	exon8	c.G858A	p.E286E	CAGGGAGGAAGAG		45	21	0.47	67	0	0				2	1	0.5				A	37326718	G	A	37326718	2	1	90	1	0	0	0	0	0	0	0	1	3960	991	35	3		3	CSF2RB	22	37326718	Silent	SNP	G	TCGA-SB-A76C-01A-11D-A435-10		37326718	13977848	69	6218											
EP300	2033	broad.mit.edu	37	chr22	41531831	41531831	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acttaggtgctagtcctatgGgagtaaatggaggtgtagga	15	4	0	0	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	EP300,NS,carcinoma,0,1	EP300	NM_001429	exon7	c.G1543T	p.G515X	CCTATGGGAGTAA		249	4	0.02	263	0	0		367	1	77	0	0				T	41531831	G	T	41531831	4	4	90	1	0	0	0	0	0	1	0	0	5176	1233	43	3	1569	3	EP300	22	41531831	Nonsense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	4205113	41531831	9772735	70	6219											
CSDC2	27254	broad.mit.edu	37	chr22	41968126	41968126	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagccctctgcccaccaagCggaccaggacctattcagcg	9	18	2	0	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	CSDC2	NM_014460	exon2	c.C157T	p.R53W	ACCAAGCGGACCA		232	5	0.02	252	0	0		15		1	0	0				T	41968126	C	T	41968126	3	4	90	1	0	0	0	0	1	0	0	0	3953	759	27	1	159	1	CSDC2	22	41968126	Missense_Mutation	SNP	C	TCGA-SB-A76C-01A-11D-A435-10	436295	41968126	9336440	71	6220											
MAOA	4128	mdanderson.org	37	chrX	43603153	43603153	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaacgagcagctagggagGtaagcaggaaagcccaggct	16	8	0	1	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_001270458	exon14	c.975+1G>T	.	AGGGAGGTAAGCA		35	3	0.09	65	0	0				1	0	0				T	43603153	G	T	43603153	5	4	90	1	0	0	0	0	0	0	1	0	9274	1275	44	3	1425	3	MAOA	23	43603153	Splice_Site	SNP	G	TCGA-SB-A76C-01A-11D-A435-10		43603153	111667407	72	6221											
FAM104B	90736	mdanderson.org	37	chrX	55172718	55172718	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatattaatgcggctgctGctcctttcattatcactcca	8	11	2	0	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_001166700	exon3	c.C150A	p.S50R	GCTGCTGCTCCTT		39	3	0.08	28	0	0				95	0	0				T	55172718	G	T	55172718	3	4	90	1	0	0	0	0	1	0	0	0	5417	1310	46	2	305	2	FAM104B	23	55172718	Missense_Mutation	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	11569565	55172718	100097842	73	6222											
MPP1	4354	mdanderson.org	37	chrX	154020464	154020464	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtatgagtcgcactttccGcacctcctgtcccttgacct	7	16	0	2	novel		TCGA-SB-A76C-01A-11D-A435-10	TCGA-SB-A76C-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93ef8c47-511c-41fd-af49-9f0490f4eabf	bfa61308-ebae-4b8c-acd3-b5cc89318427	.	.	NM_002436	exon2	c.C199A	p.R67R	CTTTCCGCACCTC		98	5	0.05	82	0	0				19	0	0				T	154020464	G	T	154020464	2	4	90	1	0	0	0	0	0	0	0	1	9781	1086	38	1		1	MPP1	23	154020464	Silent	SNP	G	TCGA-SB-A76C-01A-11D-A435-10	98847746	154020464	1250096	74	6223											
CYP4B1	1580	hgsc.bcm.edu	37	chr1	47276567	47276567	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggttcggacagttcattGgcttcctgaacatctatgag	10	9	3	2	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_000779	exon2	c.G268T	p.G90C	TTCATTGGCTTCC		61	4	0.07	60	0	0				0	0					T	47276567	G	T	47276567	3	4	91	1	0	0	0	0	1	0	0	0	4208	1348	47	3	274	3	CYP4B1	1	47276567	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10		47276567	201974054	1	6224											
ACP6	51205	broad.mit.edu	37	chr1	147142085	147142085	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgcagctcggccagggccAcccgccgctggtgcaggcag	15	17	0	0	rs201678741		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	ACP6	NM_016361	exon1	c.T86G	p.V29G	AGGGCCACCCGCC		95	33	0.35	57	16	0.2807017544		36		35	5	0.14				C	147142085	A	C	147142085	3	2	91	1	0	0	0	0	1	0	0	0	165	159	6	4	1240	4	ACP6	1	147142085	Missense_Mutation	SNP	A	TCGA-SN-A6IS-01A-11D-A435-10	99865518	147142085	102108536	2	6225											
METTL13	51603	broad.mit.edu	37	chr1	171759606	171759606	+	Frame_Shift_Del	DEL	A	A	-													gtttagcccagaagaagcggAaaaaggacaggaagaagcag					novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	METTL13	NM_015935	exon5	c.1324delA	p.K442fs	AAGCGGAAAAAGG		543	9	0.02	342	0	0		67		132	0	0				-	171759606	A	-	171759606	7	5	91	1	0	1	0	1	0	0	0	0	9546	247	9	0	1342	0	METTL13	1	171759606	Frame_Shift_Del	DEL	A	TCGA-SN-A6IS-01A-11D-A435-10	24617521	171759606	77491015	3	6226											
PLXNA2	5362	broad.mit.edu	37	chr1	208224629	208224629	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccactctggctcgatgcGctggacccgagggtcatcta	12	14	3	0	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	PLXNA2	NM_025179	exon16	c.C3133A	p.R1045S	CGATGCGCTGGAC		438	7	0.02	290	1	0.0034482759		178		199	0	0				T	208224629	G	T	208224629	3	4	91	1	0	0	0	0	1	0	0	0	12167	1087	38	1	2619	1	PLXNA2	1	208224629	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	36465023	208224629	41025992	4	6227											
ROCK2	9475	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	11355177	11355178	+	Frame_Shift_Del	DEL	AG	AG	-													cttaaccgggctgcagtatcAgactctgttcgcagtaaagc					novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	AG	AG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	ROCK2	NM_004850	exon16	c.1725_1726del	p.575_576del	AGTATCAGACTCT		144	31	0.22	134	0	0		224		15	0	0				-	11355178	AG	-	11355177	7	5	91	1	0	1	0	1	0	0	0	0	13569	175	7	0	2513	0	ROCK2	2	11355177	Frame_Shift_Del	DEL	AG	TCGA-SN-A6IS-01A-11D-A435-10		11355177	231844196	5	6228											
ARHGEF4	50649	mdanderson.org	37	chr2	131803741	131803741	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctggcacagcatcagccgGctggcacccttccgcaagtg	11	15	2	0	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_015320	exon14	c.G2052T	p.R684R	CAGCCGGCTGGCA		46	3	0.07	50	0	0				28	0	0				T	131803741	G	T	131803741	2	4	91	1	0	0	0	0	0	0	0	1	905	1190	42	2		2	ARHGEF4	2	131803741	Silent	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	120448564	131803741	111395632	6	6229											
SCN7A	6332	broad.mit.edu	37	chr2	167301385	167301385	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaaaagatcagtaaatgGtgccattataatcctatgga	9	5	1	1	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	SCN7A	NM_002976	exon12	c.C1513A	p.P505T	TAAATGGTGCCAT		185	4	0.02	169	0	0		410		0	0					T	167301385	G	T	167301385	3	4	91	1	0	0	0	0	1	0	0	0	13976	1261	44	3	3591	3	SCN7A	2	167301385	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	35497644	167301385	75897988	7	6230											
HECW2	57520	broad.mit.edu	37	chr2	197092904	197092904	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cattggctgaatattcaaatAagccataatatgggttaaag	8	5	1	1	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	HECW2	NM_020760	exon22	c.T3839G	p.L1280X	TCAAATAAGCCAT		251	6	0.02	208	0	0		239		10	0	0				C	197092904	A	C	197092904	4	2	91	1	0	0	0	0	0	1	0	0	7083	372	13	4	911	4	HECW2	2	197092904	Nonsense_Mutation	SNP	A	TCGA-SN-A6IS-01A-11D-A435-10	29791519	197092904	46106469	8	6231											
IKZF2	22807	broad.mit.edu	37	chr2	214012404	214012405	+	Frame_Shift_Del	DEL	AA	AA	-													ctggagagacacacacacacAaaaaaaaatcataaaatgaa					rs112988286	bycluster	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	AA	AA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	IKZF2	.	.	.	.	ACACACAAAAAAA		55	9	0.16	46	0	0		71		0	0					-	214012405	AA	-	214012404	7	5	91	1	0	1	0	1	0	0	0	0	7658	145	5	0		0	IKZF2	2	214012404	Frame_Shift_Del	DEL	AA	TCGA-SN-A6IS-01A-11D-A435-10	16919500	214012404	29186969	9	6232											
GOLGB1	2804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	121448824	121448824	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcctgaacatcttcttgtGtagtattattaaattccatg	6	8	2	1	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_004487	exon3	c.C137T	p.T46I	TCTTGTGTAGTAT		100	22	0.22	61	0	0				11	5	0.45				A	121448824	G	A	121448824	3	1	91	1	0	0	0	0	1	0	0	0	6603	1377	48	3	9722	3	GOLGB1	3	121448824	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10		121448824	76573606	10	6233											
SPATA16	83893	broad.mit.edu	37	chr3	172643226	172643226	+	Frame_Shift_Del	DEL	G	G	-													aagagtcaagagatattgttGgggaggaaaagatgaccagt					novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	SPATA16	NM_031955	exon7	c.1138delC	p.Q380fs	ATTGTTGGGGAGG		296	8	0.03	271	0	0		111		0	0					-	172643226	G	-	172643226	7	5	91	1	0	1	0	1	0	0	0	0	15056	1357	47	0	591	0	SPATA16	3	172643226	Frame_Shift_Del	DEL	G	TCGA-SN-A6IS-01A-11D-A435-10	51194402	172643226	25379204	11	6234											
MUC4	4585	mdanderson.org	37	chr3	195510622	195510622	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggaaaggctggtgacaGgaagaggggtggcctgacct	18	7	0	4	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_018406	exon2	c.C7829A	p.P2610H	GTGACAGGAAGAG		32	3	0.09	17	0	0				7	0	0				T	195510622	G	T	195510622	3	4	91	1	0	0	0	0	1	0	0	0	10025	1000	35	3		3	MUC4	3	195510622	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	22867396	195510622	2511808	12	6235											
MUC4	4585	broad.mit.edu	37	chr3	195516898	195516898	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctgtagatggatttcctGtgacaagcctagtggcagca	11	10	0	2	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	MUC4	NM_018406	exon2	c.C1553A	p.T518K	TTTCCTGTGACAA		174	5	0.03	137	0	0		1505		10	0	0				T	195516898	G	T	195516898	3	4	91	1	0	0	0	0	1	0	0	0	10025	1377	48	3		3	MUC4	3	195516898	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	6276	195516898	2505532	13	6236											
PIGX	54965	mdanderson.org	37	chr3	196443744	196443744	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tataggcataagggccatgtGttctgaaattattttgaggc	11	5	1	2	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_017861	exon2	c.G128T	p.C43F	CCATGTGTTCTGA		97	5	0.05	87	0	0				15	0	0				T	196443744	G	T	196443744	3	4	91	1	0	0	0	0	1	0	0	0	11950	1377	48	3	134	3	PIGX	3	196443744	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	926846	196443744	1578686	14	6237											
IDUA	3425	broad.mit.edu	37	chr4	996204	996204	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcgcttccaggtcaacaacAcccgcccgccgcacgtgcag	10	19	1	0	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	IDUA	NM_000203	exon8	c.A1120C	p.T374P	AACAACACCCGCC		113	39	0.35	90	29	0.3222222222		33		4	0	0				C	996204	A	C	996204	3	2	91	1	0	0	0	0	1	0	0	0	7547	159	6	4	1150	4	IDUA	4	996204	Missense_Mutation	SNP	A	TCGA-SN-A6IS-01A-11D-A435-10		996204	190158072	15	6238											
POLN	353497	hgsc.bcm.edu	37	chr4	2077181	2077181	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttgccccaggctacctGcacactccgggatctgcgga	12	14	1	0	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_181808	exon22	c.C2453A	p.A818E	CTACCTGCACACT		80	4	0.05	80	0	0				0	0					T	2077181	G	T	2077181	3	4	91	1	0	0	0	0	1	0	0	0	12254	1319	46	2	261	2	POLN	4	2077181	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	1080977	2077181	189077095	16	6239											
HTT	3064	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	3237461	3237461	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacgtgcacagcccgcaccGggccatggcggctctgggcc	15	16	1	0	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	HTT,NS,carcinoma,0,1	HTT	NM_002111	exon63	c.G8741T	p.R2914L	CGCACCGGGCCAT		22	4	0.18	39	0	0		221	1	111	0	0				T	3237461	G	T	3237461	3	4	91	1	0	0	0	0	1	0	0	0	7500	1116	39	1	8991	1	HTT	4	3237461	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	1160280	3237461	187916815	17	6240											
RASGEF1B	153020	mdanderson.org	37	chr4	82368726	82368726	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctggcccaatataattgaGcctctcctgaaacacaaacc	5	13	2	2	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_152545	exon6	c.C661A	p.L221I	AATTGAGCCTCTC		48	3	0.06	74	0	0				5	0	0				T	82368726	G	T	82368726	3	4	91	1	0	0	0	0	1	0	0	0	13121	971	34	2	796	2	RASGEF1B	4	82368726	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	79131265	82368726	108785550	18	6241											
SEC31A	22872	mdanderson.org	37	chr4	83763615	83763615	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccctgttccgaagggataCggctgggctggttgataagc	14	11	0	1	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_001077207	exon22	c.G2646A	p.P882P	GGGATACGGCTGG		50	3	0.06	68	0	0				287	0	0				T	83763615	C	T	83763615	2	4	91	1	0	0	0	0	0	0	0	1	14051	523	19	1		1	SEC31A	4	83763615	Silent	SNP	C	TCGA-SN-A6IS-01A-11D-A435-10	1394889	83763615	107390661	19	6242											
UFSP2	55325	broad.mit.edu;mdanderson.org	37	chr4	186324768	186324768	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attgtgtgggccaaaactccTccccctatagaagaaaaaat	7	10	0	2	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	UFSP2,bladder,carcinoma,-2,1	UFSP2	NM_018359	exon11	c.A1203G	p.G401G	AACTCCTCCCCCT		82	4	0.05	93	0	0		33	1	97	0	0				C	186324768	T	C	186324768	2	2	91	1	0	0	0	0	0	0	0	1	16997	1538	54	4		4	UFSP2	4	186324768	Silent	SNP	T	TCGA-SN-A6IS-01A-11D-A435-10	102561153	186324768	4829508	20	6243											
AGXT2	64902	mdanderson.org	37	chr5	35035382	35035382	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggccatcagcatggccaGctcattggcttctgagccac	10	15	3	1	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_031900	exon5	c.C526A	p.L176M	TGGCCAGCTCATT		31	3	0.1	35	0	0				0	0					T	35035382	G	T	35035382	3	4	91	1	0	0	0	0	1	0	0	0	402	962	34	2	1058	2	AGXT2	5	35035382	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10		35035382	145879878	21	6244											
CUL9	23113	mdanderson.org	37	chr6	43166534	43166534	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagacccagcctttcctcctGttgctgcggactctggatgc	11	14	1	1	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_015089	exon12	c.G2991T	p.L997L	CCTCCTGTTGCTG		37	3	0.08	38	0	0				18	0	0				T	43166534	G	T	43166534	2	4	91	1	0	0	0	0	0	0	0	1	4084	1364	48	3		3	CUL9	6	43166534	Silent	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10		43166534	127948533	22	6245											
MRAP2	112609	mdanderson.org	37	chr6	84765083	84765083	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaacctcccagcaatcgGcatctaattctgattacacc	5	14	2	2	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_138409	exon2	c.G46T	p.A16S	CAATCGGCATCTA		52	3	0.06	59	0	0				7	0	0				T	84765083	G	T	84765083	3	4	91	1	0	0	0	0	1	0	0	0	9802	1203	42	2	48	2	MRAP2	6	84765083	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	41598549	84765083	86349984	23	6246											
CDK13	8621	mdanderson.org	37	chr7	39991320	39991320	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggctgccgcgctccccgagCccctacagtcgccgccgctc	11	22	0	0	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_003718	exon1	c.C1080T	p.S360S	CCCGAGCCCCTAC		13	2	0.15	9	0	0				44	0	0				T	39991320	C	T	39991320	2	4	91	1	0	0	0	0	0	0	0	1	3151	738	26	2		2	CDK13	7	39991320	Silent	SNP	C	TCGA-SN-A6IS-01A-11D-A435-10		39991320	119147343	24	6247											
ZNF789	285989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	99084226	99084227	+	Frame_Shift_Del	DEL	GT	GT	-													ctttcagaaaagttacataaGtgtaaagaatttgtggacag					novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	GT	GT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	ZNF789	NM_213603	exon5	c.392_393del	p.131_131del	ACATAAGTGTAAA		189	27	0.14	191	0	0		33		40	0	0				-	99084227	GT	-	99084226	7	5	91	1	0	1	0	1	0	0	0	0	18208	1020	36	0	449	0	ZNF789	7	99084226	Frame_Shift_Del	DEL	GT	TCGA-SN-A6IS-01A-11D-A435-10	59092906	99084226	60054437	25	6248											
ZNF777	27153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	149153033	149153033	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tggaacagagtttctcggggGagtccagcaggggcctgacg	17	9	1	2	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_015694	exon2	c.C81T	p.L27L	TCGGGGGAGTCCA		112	23	0.21	98	0	0				49	19	0.39				A	149153033	G	A	149153033	2	1	91	1	0	0	0	0	0	0	0	1	18198	1161	41	3		3	ZNF777	7	149153033	Silent	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	50068807	149153033	9985630	26	6249											
CHPF2	54480	mdanderson.org	37	chr7	150932588	150932588	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagtctcctgcttcgtctgCggccacatctggatggctgc	13	13	3	0	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_019015	exon2	c.C718T	p.R240W	CGTCTGCGGCCAC		28	3	0.11	33	0	0				46	0	0				T	150932588	C	T	150932588	3	4	91	1	0	0	0	0	1	0	0	0	3391	759	27	1	724	1	CHPF2	7	150932588	Missense_Mutation	SNP	C	TCGA-SN-A6IS-01A-11D-A435-10	1779555	150932588	8206075	27	6250											
ASH2L	9070	mdanderson.org	37	chr8	37963102	37963102	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcaggacctggccaggaaGcgggtgccgggcctggccca	18	13	0	0	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_004674	exon1	c.G34T	p.A12S	CAGGAAGCGGGTG		42	3	0.07	32	0	0				78	0	0				T	37963102	G	T	37963102	3	4	91	1	0	0	0	0	1	0	0	0	1041	971	34	2	36	2	ASH2L	8	37963102	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10		37963102	108400920	28	6251											
SLC20A2	6575	broad.mit.edu	37	chr8	42329669	42329669	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtctccaccgtctcgttGtacaggttcacgtcaatgat	9	11	4	2	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	SLC20A2	NM_001257181	exon2	c.C240A	p.Y80X	CTCGTTGTACAGG		328	7	0.02	301	0	0		64		36	0	0				T	42329669	G	T	42329669	4	4	91	1	0	0	0	0	0	1	0	0	14493	1372	48	3	1758	3	SLC20A2	8	42329669	Nonsense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	4366567	42329669	104034353	29	6252											
PUF60	22827	broad.mit.edu	37	chr8	144899807	144899807	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcagctgccacagcagcGgcaggtgggaggcctccagg	17	13	0	0	rs202135558	bycluster;by1000genomes;alternate_allele	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	PUF60	NM_078480	exon9	c.C963A	p.A321A	AGCAGCGGCAGGT		69	3	0.04	60	0	0		26		623	0	0				T	144899807	G	T	144899807	2	4	91	1	0	0	0	0	0	0	0	1	12875	1103	39	1		1	PUF60	8	144899807	Silent	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	102570138	144899807	1464215	30	6253											
LAMC3	10319	mdanderson.org	37	chr9	133951288	133951288	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgcctccaacaccagctacGcgcttctctggaatctgctg	8	16	2	0	rs375541717	alternate_allele	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_006059	exon21	c.G3565T	p.A1189S	AGCTACGCGCTTC		57	3	0.05	42	0	0				101	0	0				T	133951288	G	T	133951288	3	4	91	1	0	0	0	0	1	0	0	0	8654	1087	38	1	3647	1	LAMC3	9	133951288	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10		133951288	7262143	31	6254											
LAMC3	10319	mdanderson.org	37	chr9	133952608	133952608	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcggcccagaaagcactgAggacggctgtggcagaggtg	18	9	0	3	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_006059	exon22	c.A3664G	p.R1222G	GCACTGAGGACGG		49	3	0.06	50	0	0				91	0	0				G	133952608	A	G	133952608	3	3	91	1	0	0	0	0	1	0	0	0	8654	295	11	4	3750	4	LAMC3	9	133952608	Missense_Mutation	SNP	A	TCGA-SN-A6IS-01A-11D-A435-10	1320	133952608	7260823	32	6255											
ABCA2	20	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr9	139907669	139907669	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaacgtgggccccagcgagCcgttggcgggagacttgagc	16	12	1	2	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_212533	exon30	c.G4742A	p.G1581D	AGCGAGCCGTTGG		34	6	0.18	40	0	0				22	5	0.23				T	139907669	C	T	139907669	3	4	91	1	0	0	0	0	1	0	0	0	32	739	26	2	2738	2	ABCA2	9	139907669	Missense_Mutation	SNP	C	TCGA-SN-A6IS-01A-11D-A435-10	5955061	139907669	1305762	33	6256											
DPP7	29952	broad.mit.edu	37	chr9	140006326	140006326	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	caccccccctcagccttaccAcccccccagaagctggtcag	6	22	2	1	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	DPP7	NM_013379	exon10	c.T1206G	p.G402G	CTTACCACCCCCC		75	14	0.19	67	8	0.1194029851		22		154	6	0.04				C	140006326	A	C	140006326	5	2	91	1	0	0	0	0	0	0	1	0	4757	173	6	4	288	4	DPP7	9	140006326	Splice_Site	SNP	A	TCGA-SN-A6IS-01A-11D-A435-10	98657	140006326	1207105	34	6257											
SLC29A3	55315	hgsc.bcm.edu	37	chr10	73121735	73121735	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacatgaggcctgttcttgcGgcccatgtgttttctggtga	12	9	2	2	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_018344	exon6	c.G798T	p.A266A	TCTTGCGGCCCAT		118	3	0.03	77	0	0				45	0	0				T	73121735	G	T	73121735	2	4	91	1	0	0	0	0	0	0	0	1	14590	1103	39	1		1	SLC29A3	10	73121735	Silent	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10		73121735	62413012	35	6258											
ZFYVE27	118813	mdanderson.org	37	chr10	99504637	99504637	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctgcagagaggtcgcctGtctcgtcccgaggccgtggc	15	14	1	1	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_001002261	exon3	c.G420T	p.L140L	TCGCCTGTCTCGT		46	3	0.07	20	0	0				41	0	0				T	99504637	G	T	99504637	2	4	91	1	0	0	0	0	0	0	0	1	17726	1364	48	3		3	ZFYVE27	10	99504637	Silent	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	26382902	99504637	36030110	36	6259											
KRTAP5-5	439915	bcgsc.ca	37	chr11	1651127	1651127	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgtggaggccgtggctcCggctgtgggggctgtggctc	21	10	0	0	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	KRTAP5-5	NM_001001480	exon1	c.C57T	p.S19S	TGGCTCCGGCTGT		105	7	0.07	95	0	0		86		0	0					T	1651127	C	T	1651127	2	4	91	1	0	0	0	0	0	0	0	1	8602	639	23	1		1	KRTAP5-5	11	1651127	Silent	SNP	C	TCGA-SN-A6IS-01A-11D-A435-10		1651127	133355389	37	6260											
MRGPRE	116534	mdanderson.org	37	chr11	3249138	3249138	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgggaggtctccctgacggCccccagctcagcctcgtctc	12	18	3	1	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_001039165	exon2	c.G892A	p.A298T	TGACGGCCCCCAG		17	2	0.12	27	0	0				0	0					T	3249138	C	T	3249138	3	4	91	1	0	0	0	0	1	0	0	0	9812	739	26	2	50	2	MRGPRE	11	3249138	Missense_Mutation	SNP	C	TCGA-SN-A6IS-01A-11D-A435-10	1598011	3249138	131757378	38	6261											
SAAL1	113174	mdanderson.org	37	chr11	18127494	18127494	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccgaagagccagtgtttgCtgtagaccgtgctccctatg	12	12	0	2	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_138421	exon1	c.G95A	p.S32N	TGTTTGCTGTAGA		46	3	0.07	44	0	0				48	0	0				T	18127494	C	T	18127494	3	4	91	1	0	0	0	0	1	0	0	0	13852	797	28	2	1377	2	SAAL1	11	18127494	Missense_Mutation	SNP	C	TCGA-SN-A6IS-01A-11D-A435-10	14878356	18127494	116879022	39	6262											
NAT10	55226	mdanderson.org	37	chr11	34153768	34153768	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacgtggcttctcactacaaGgtaactgcagctagcccttg	9	12	1	0	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_024662	exon15	c.G1617T	p.K539N	CTACAAGGTAACT		76	4	0.05	91	0	0				86	0	0				T	34153768	G	T	34153768	3	4	91	1	0	0	0	0	1	0	0	0	10221	1014	35	3	1671	3	NAT10	11	34153768	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	16026274	34153768	100852748	40	6263											
TMEM132A	54972	mdanderson.org	37	chr11	60698031	60698031	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagccgcccgcccagcccagCccacactctggactgccaag	9	21	1	0	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_017870	exon5	c.C916T	p.P306S	GCCCAGCCCACAC		39	3	0.08	47	0	0				96	0	0				T	60698031	C	T	60698031	3	4	91	1	0	0	0	0	1	0	0	0	16104	739	26	2	934	2	TMEM132A	11	60698031	Missense_Mutation	SNP	C	TCGA-SN-A6IS-01A-11D-A435-10	26544263	60698031	74308485	41	6264											
DLG2	1740	mdanderson.org	37	chr11	84028172	84028172	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcagctgtgttgcttgGtgaggtatgcattcatactg	14	7	1	1	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_001206769	exon1	c.C17A	p.T6N	TGCTTGGTGAGGT		44	3	0.07	75	0	0				0	0					T	84028172	G	T	84028172	3	4	91	1	0	0	0	0	1	0	0	0	4583	1276	44	3		3	DLG2	11	84028172	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	23330141	84028172	50978344	42	6265											
OR6X1	390260	mdanderson.org	37	chr11	123624888	123624888	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cggtcaaaagacatgatagtGaggatcaagaactcggtggt	13	6	2	4	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_001005188	exon1	c.C339A	p.L113L	GATAGTGAGGATC		79	4	0.05	87	0	0				0	0					T	123624888	G	T	123624888	2	4	91	1	0	0	0	0	0	0	0	1	11258	1277	45	3		3	OR6X1	11	123624888	Silent	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	39596716	123624888	11381628	43	6266											
GXYLT1	283464	hgsc.bcm.edu	37	chr12	42481617	42481617	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ctttggtgatctggcataacGatctcttacactttttgcta	7	9	2	1	rs75740340	bycluster	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	Q8IXV1_HUMAN,NS,carcinoma,+1,2	Q8IXV1_HUMAN	NM_173601	exon8	c.C1294G	p.R432G	CATAACGATCTCT		73	3	0.04	83	0	0	0.002	1	2	20	0	0				C	42481617	G	C	42481617	3	2	91	1	0	0	0	0	1	0	0	0	6943	1058	37	5	32	5	GXYLT1	12	42481617	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10		42481617	91370278	44	6267											
KCNH3	23416	mdanderson.org	37	chr12	49943881	49943881	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agctgctgcagagcctccctGacgagctgcgcgcagacatc	12	15	0	3	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_012284	exon10	c.G1687T	p.D563Y	CTCCCTGACGAGC		33	3	0.09	19	0	0				16	0	0				T	49943881	G	T	49943881	3	4	91	1	0	0	0	0	1	0	0	0	8076	1290	45	3	1725	3	KCNH3	12	49943881	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	7462264	49943881	83908014	45	6268											
SPRYD4	283377	broad.mit.edu	37	chr12	56862911	56862911	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcaaatatggcttggtgggAttggagcccaccaaggtggc	15	8	1	0	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	SPRYD4	NM_207344	exon2	c.A174G	p.G58G	GGTGGGATTGGAG		63	10	0.16	60	13	0.2166666667		13		49	7	0.14				G	56862911	A	G	56862911	2	3	91	1	0	0	0	0	0	0	0	1	15165	320	12	4		4	SPRYD4	12	56862911	Silent	SNP	A	TCGA-SN-A6IS-01A-11D-A435-10	6919030	56862911	76988984	46	6269											
ZFC3H1	196441	hgsc.bcm.edu;broad.mit.edu	37	chr12	72023401	72023405	+	Frame_Shift_Del	DEL	TTTCA	TTTCA	-													gtacttactatgacctttacTttcattgatattgctaacaa					novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	TTTCA	TTTCA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	ZFC3H1	NM_144982	exon19	c.3811_3815del	p.1271_1272del	CTTTACTTTCATT		72	10	0.14	48	0	0		172		17	0	0				-	72023405	TTTCA	-	72023401	7	5	91	1	0	1	0	1	0	0	0	0	17690	1609	56	0	2223	0	ZFC3H1	12	72023401	Frame_Shift_Del	DEL	TTTCA	TCGA-SN-A6IS-01A-11D-A435-10	15160490	72023401	61828494	47	6270											
CUX2	23316	mdanderson.org	37	chr12	111776097	111776097	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctatccccagggcagcgGctgtttggggaaagcatcct	12	14	0	0	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	CUX2,colon,carcinoma,+2,1	CUX2	NM_015267	exon20	c.G3204T	p.R1068R	GCAGCGGCTGTTT		37	3	0.08	19	0	0		2	1	23	0	0				T	111776097	G	T	111776097	2	4	91	1	0	0	0	0	0	0	0	1	4088	1190	42	2		2	CUX2	12	111776097	Silent	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	39752696	111776097	22075798	48	6271											
RNF10	9921	broad.mit.edu	37	chr12	121004666	121004666	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctcgagaatctacagcagTttcctgccttcaattcttat	5	13	3	1	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	RNF10	NM_014868	exon13	c.T1924C	p.F642L	CAGCAGTTTCCTG		309	7	0.02	255	0	0		75		479	3	0.01				C	121004666	T	C	121004666	3	2	91	1	0	0	0	0	1	0	0	0	13473	1725	60	4	1974	4	RNF10	12	121004666	Missense_Mutation	SNP	T	TCGA-SN-A6IS-01A-11D-A435-10	9228569	121004666	12847229	49	6272											
PITPNM2	57605	ucsc.edu	37	chr12	123475099	123475099	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctggtatactcactctgggcGatgctggatgccgtgtagct	13	10	2	0	rs376540906	alternate_allele	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	PITPNM2	NM_020845	exon16	c.C2562T	p.I854I	CTGGGCGATGCTG		41	4	0.1	31	0	0		105		19	0	0				A	123475099	G	A	123475099	2	1	91	1	0	0	0	0	0	0	0	1	11998	1048	37	1		1	PITPNM2	12	123475099	Silent	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	2470433	123475099	10376796	50	6273											
FLT1	2321	mdanderson.org	37	chr13	28883002	28883002	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caaacatggaggtggcattcGgtaaaagttcttcaaaggtt	11	6	2	0	rs115595062	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_002019	exon28	c.C3698A	p.P1233Q	GCATTCGGTAAAA		60	4	0.07	94	0	0				14	0	0				T	28883002	G	T	28883002	3	4	91	1	0	0	0	0	1	0	0	0	5973	1116	39	1	330	1	FLT1	13	28883002	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10		28883002	86286876	51	6274											
RFC3	5983	mdanderson.org	37	chr13	34540232	34540232	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tatctcttacaggcatgtaaGgaggaatcaagaagctgtga	11	6	2	2	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	RFC3_ENST00000434425,NS,carcinoma,0,1	RFC3_ENST00000434425	NM_181558	exon9	c.G888T	p.K296N	ATGTAAGGAGGAA		46	3	0.07	33	0	0		0	1	4	0	0				T	34540232	G	T	34540232	3	4	91	1	0	0	0	0	1	0	0	0	13297	991	35	3	1118	3	RFC3	13	34540232	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	5657230	34540232	80629646	52	6275											
PCDH8	5100	mdanderson.org	37	chr13	53420855	53420855	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcgaacgtcgagttggcGcagcgtctcatagtcgaagc	14	10	1	0	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_002590	exon1	c.C1717A	p.R573S	GTTGGCGCAGCGT		28	3	0.11	21	0	0				0	0					T	53420855	G	T	53420855	3	4	91	1	0	0	0	0	1	0	0	0	11563	1087	38	1	1507	1	PCDH8	13	53420855	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	18880623	53420855	61749023	53	6276											
DIAPH3	81624	mdanderson.org	37	chr13	60565332	60565332	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aatcagcaaaagatgctgaaGaatagaaataaaatatccct	6	6	1	4	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_001042517	exon12	c.C1321A	p.L441I	GCTGAAGAATAGA		40	3	0.08	35	0	0				15	0	0				T	60565332	G	T	60565332	3	4	91	1	0	0	0	0	1	0	0	0	4548	942	33	3	2348	3	DIAPH3	13	60565332	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	7144477	60565332	54604546	54	6277											
SYNE2	23224	mdanderson.org	37	chr14	64593514	64593514	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aagctggcctcgattacaacCgcagttaccaggtatgattc	9	11	0	1	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	SYNE2,NS,carcinoma,-2,1	SYNE2	NM_015180	exon73	c.C13906A	p.R4636S	TACAACCGCAGTT		35	3	0.09	24	0	0		-2	1	30	0	0				A	64593514	C	A	64593514	3	1	91	1	0	0	0	0	1	0	0	0	15502	652	23	1	14192	1	SYNE2	14	64593514	Missense_Mutation	SNP	C	TCGA-SN-A6IS-01A-11D-A435-10		64593514	42756026	55	6278											
CCNK	8812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	99959052	99959052	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aaattcaagcccttcagtaaCttcagcaaacctggaccaca	5	13	3	0	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_001099402	exon2	c.C38G	p.T13S	CAGTAACTTCAGC		139	23	0.17	143	0	0				131	26	0.2				G	99959052	C	G	99959052	3	3	91	1	0	0	0	0	1	0	0	0	2952	565	20	5	40	5	CCNK	14	99959052	Missense_Mutation	SNP	C	TCGA-SN-A6IS-01A-11D-A435-10	35365538	99959052	7390488	56	6279											
CD276	80381	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	73995180	73995180	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggccaggggacacggtgacCatcacgtgctccagctacca	12	15	1	1	rs146911233	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_001024736	exon4	c.C486T	p.T162T	GGTGACCATCACG		125	23	0.18	118	0	0				138	24	0.17				T	73995180	C	T	73995180	2	4	91	1	0	0	0	0	0	0	0	1	3014	581	21	3		3	CD276	15	73995180	Silent	SNP	C	TCGA-SN-A6IS-01A-11D-A435-10		73995180	28536212	57	6280											
PRR25	388199	mdanderson.org	37	chr16	863659	863659	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catctggctggtggagcccgGggaggccgcccaggaccctg	17	14	1	0	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_001013638	exon3	c.G1007T	p.G336V	AGCCCGGGGAGGC		20	2	0.1	13	0	0				0	0					T	863659	G	T	863659	3	4	91	1	0	0	0	0	1	0	0	0	12646	1232	43	3	1017	3	PRR25	16	863659	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10		863659	89491094	58	6281											
TELO2	9894	mdanderson.org	37	chr16	1550145	1550145	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atctggccatggacagccagCggcgcccgctcctgctgcag	13	16	1	0	rs140327619		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_016111	exon7	c.C982T	p.R328W	AGCCAGCGGCGCC		33	3	0.09	36	0	0	0			70	0	0				T	1550145	C	T	1550145	3	4	91	1	0	0	0	0	1	0	0	0	15815	759	27	1	1004	1	TELO2	16	1550145	Missense_Mutation	SNP	C	TCGA-SN-A6IS-01A-11D-A435-10	686486	1550145	88804608	59	6282											
RFWD3	55159	broad.mit.edu	37	chr16	74660394	74660394	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcagattggatttccagtGtcatccagtcggtaggacat	12	8	1	1	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	RFWD3	NM_018124	exon12	c.C2028A	p.D676E	TCCAGTGTCATCC		163	5	0.03	137	0	0		49		199	0	0				T	74660394	G	T	74660394	3	4	91	1	0	0	0	0	1	0	0	0	13312	1368	48	3	304	3	RFWD3	16	74660394	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	73110249	74660394	15694359	60	6283											
KRT33B	3884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	39525812	39525812	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtagctggccaggcggtcgTtcaggaactgcatagtctcc	14	11	2	0	rs199518913	bycluster;by1000genomes	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	KRT33B,NS,carcinoma,+1,3	KRT33B	NM_002279	exon1	c.A191G	p.N64S	CGGTCGTTCAGGA		166	44	0.27	161	0	0	0	1	3	0	0					C	39525812	T	C	39525812	3	2	91	1	0	0	0	0	1	0	0	0	8512	1725	60	4	1051	4	KRT33B	17	39525812	Missense_Mutation	SNP	T	TCGA-SN-A6IS-01A-11D-A435-10		39525812	41669398	61	6284											
RGS9	8787	mdanderson.org	37	chr17	63221447	63221447	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctcctaaggcccgcatgGctctgtccttcagcaggttt	9	16	2	0	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	RGS9,NS,carcinoma,0,1	RGS9	NM_003835	exon18	c.G1735T	p.A579S	CGCATGGCTCTGT		30	3	0.1	35	0	0		0	1	0	0					T	63221447	G	T	63221447	3	4	91	1	0	0	0	0	1	0	0	0	13362	1203	42	2	1860	2	RGS9	17	63221447	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	23695635	63221447	17973763	62	6285											
LPIN2	9663	mdanderson.org	37	chr18	2931429	2931429	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgggccactgcctggaaccGggctccgattcactgtggac	13	14	1	0	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_014646	exon9	c.C1281A	p.P427P	GGAACCGGGCTCC		33	3	0.09	21	0	0				35	0	0				T	2931429	G	T	2931429	2	4	91	1	0	0	0	0	0	0	0	1	8963	1103	39	1		1	LPIN2	18	2931429	Silent	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10		2931429	75145819	63	6286											
ARID3A	1820	mdanderson.org	37	chr19	932484	932484	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgaggaggaggaggaggaGgattacgaggatgaggagga	22	1	0	2	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_005224	exon3	c.G435T	p.E145D	GGAGGAGGATTAC		52	4	0.08	34	0	0				11	0	0				T	932484	G	T	932484	3	4	91	1	0	0	0	0	1	0	0	0	913	991	35	3	441	3	ARID3A	19	932484	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10		932484	58196499	64	6287											
REEP6	92840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	1496326	1496326	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctcccaggccctggaacGgggctctcatgctgtatcag	13	13	2	0	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_138393	exon4	c.G391T	p.G131W	TGGAACGGGGCTC		54	6	0.11	49	0	0				268	0	0				T	1496326	G	T	1496326	3	4	91	1	0	0	0	0	1	0	0	0	13260	1116	39	1	405	1	REEP6	19	1496326	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	563842	1496326	57632657	65	6288											
AMH	268	hgsc.bcm.edu;broad.mit.edu	37	chr19	2249483	2249484	+	Frame_Shift_Del	DEL	AA	AA	-													ctggcctccaggcagcccacAagagcctctgtgcctggtgg					novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	AA	AA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	AMH	NM_000479	exon1	c.151_152del	p.51_51del	GCCCACAAGAGCC		39	10	0.26	24	0	0		12		18	8	0.44				-	2249484	AA	-	2249483	7	5	91	1	0	1	0	1	0	0	0	0	568	130	5	0	154	0	AMH	19	2249483	Frame_Shift_Del	DEL	AA	TCGA-SN-A6IS-01A-11D-A435-10	753157	2249483	56879500	66	6289											
YIPF2	78992	bcgsc.ca;mdanderson.org	37	chr19	11038590	11038590	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatcgcttctgctggtggtgGctgcatctggggtgtcagcc	16	10	3	0	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	YIPF2	NM_024029	exon3	c.C77T	p.A26V	GTGGTGGCTGCAT		102	5	0.05	92	0	0		13		271	0	0				A	11038590	G	A	11038590	3	1	91	1	0	0	0	0	1	0	0	0	17537	1203	42	2	901	2	YIPF2	19	11038590	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	8789107	11038590	48090393	67	6290											
RASAL3	64926	mdanderson.org	37	chr19	15574979	15574979	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacccgacggaatatcgagCgaggggctggctgggtgctg	19	9	0	0	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_022904	exon2	c.G191A	p.R64H	ATCGAGCGAGGGG		44	3	0.07	45	0	0				25	0	0				T	15574979	C	T	15574979	3	4	91	1	0	0	0	0	1	0	0	0	13116	768	27	1	2912	1	RASAL3	19	15574979	Missense_Mutation	SNP	C	TCGA-SN-A6IS-01A-11D-A435-10	4536389	15574979	43554004	68	6291											
MYBPC2	4606	broad.mit.edu	37	chr19	50955169	50955169	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggaagacctcagagaatgCgattgtggttgtggctggaa	17	5	1	2	rs11879768	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	MYBPC2	NM_004533	exon16	c.C1658T	p.A553V	AGAATGCGATTGT		234	4	0.02	180	0	0		103		3	0	0				T	50955169	C	T	50955169	3	4	91	1	0	0	0	0	1	0	0	0	10059	768	27	1	1720	1	MYBPC2	19	50955169	Missense_Mutation	SNP	C	TCGA-SN-A6IS-01A-11D-A435-10	35380190	50955169	8173814	69	6292											
KLK2	3817	bcgsc.ca	37	chr19	51376760	51376760	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggttctctccatcgccttgTctgtggggtgcactggtgag	14	10	2	1	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	KLK2	NM_001002231	exon1	c.T31C	p.S11P	GCCTTGTCTGTGG		54	4	0.07	52	0	0		66		0	0					C	51376760	T	C	51376760	3	2	91	1	0	0	0	0	1	0	0	0	8446	1667	58	4	33	4	KLK2	19	51376760	Missense_Mutation	SNP	T	TCGA-SN-A6IS-01A-11D-A435-10	421591	51376760	7752223	70	6293											
NSFL1C	55968	mdanderson.org	37	chr20	1447419	1447419	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggcccggtcctcctcggcGcccgtcaccgccacgaactc	11	21	1	0	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_016143	exon1	c.C51A	p.G17G	CTCGGCGCCCGTC		31	3	0.1	30	0	0				190	2	0.01				T	1447419	G	T	1447419	2	4	91	1	0	0	0	0	0	0	0	1	10719	1074	38	1		1	NSFL1C	20	1447419	Silent	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10		1447419	61578101	71	6294											
SNRPB2	6629	bcgsc.ca;mdanderson.org	37	chr20	16721614	16721614	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggatttaagatcacaccGtcccatgctatgaagatcac	8	11	2	3	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	SNRPB2,NS,carcinoma,0,1	SNRPB2	NM_003092	exon7	c.G642T	p.P214P	CACACCGTCCCAT		92	5	0.05	72	0	0		12	1	454	0	0				T	16721614	G	T	16721614	2	4	91	1	0	0	0	0	0	0	0	1	14915	1132	40	1		1	SNRPB2	20	16721614	Silent	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	15274195	16721614	46303906	72	6295											
GMEB2	26205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	62221817	62221817	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccttgcccaggacggtggaCggcagggtggacaccacttt	14	13	0	0	rs368204390		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_012384	exon10	c.G1218A	p.P406P	GGTGGACGGCAGG		108	23	0.21	84	0	0				43	17	0.4				T	62221817	C	T	62221817	2	4	91	1	0	0	0	0	0	0	0	1	6529	523	19	1		1	GMEB2	20	62221817	Silent	SNP	C	TCGA-SN-A6IS-01A-11D-A435-10	45500203	62221817	803703	73	6296											
NPBWR2	2832	mdanderson.org	37	chr20	62738008	62738008	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acggccgtgttgccagtcagCcccacagcacagatcccgga	11	16	1	1	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_005286	exon1	c.G177A	p.G59G	AGTCAGCCCCACA		44	3	0.07	51	0	0				2	0	0				T	62738008	C	T	62738008	2	4	91	1	0	0	0	0	0	0	0	1	10615	726	26	2		2	NPBWR2	20	62738008	Silent	SNP	C	TCGA-SN-A6IS-01A-11D-A435-10	516191	62738008	287512	74	6297											
MED15	51586	mdanderson.org	37	chr22	20937421	20937421	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaccccagctctgtcatgaGcccagctggctccagccagg	11	16	2	1	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_001003891	exon12	c.G1559T	p.S520I	TCATGAGCCCAGC		50	3	0.06	53	0	0				405	1	0				T	20937421	G	T	20937421	3	4	91	1	0	0	0	0	1	0	0	0	9482	971	34	2	1605	2	MED15	22	20937421	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10		20937421	30367145	75	6298											
MYH9	4627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	36716924	36716924	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cttggcttggcggatagcacGagatttctccaaaagatctt	10	9	2	2	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	MYH9,NS,malignant_melanoma,0,1	MYH9	NM_002473	exon8	c.C787T	p.R263C	TAGCACGAGATTT		76	12	0.16	65	0	0		0	1	366	41	0.11				A	36716924	G	A	36716924	3	1	91	1	0	0	0	0	1	0	0	0	10089	1058	37	1	5231	1	MYH9	22	36716924	Missense_Mutation	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10	15779503	36716924	14587642	76	6299											
MGAT3	4248	broad.mit.edu	37	chr22	39884889	39884889	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagcacggcggcgggcgggTggcgccacaggggtcccgag	22	12	0	0	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	MGAT3	NM_002409	exon2	c.T1537G	p.W513G	GGCGGGTGGCGCC		58	13	0.22	66	16	0.2424242424		65		127	12	0.09				G	39884889	T	G	39884889	3	3	91	1	0	0	0	0	1	0	0	0	9593	1696	59	4	1539	4	MGAT3	22	39884889	Missense_Mutation	SNP	T	TCGA-SN-A6IS-01A-11D-A435-10	3167965	39884889	11419677	77	6300											
HSD17B10	3028	mdanderson.org	37	chrX	53459354	53459354	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgcacatccttctcagaGgtcaccttcaaagagagaag	9	10	3	3	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_004493	exon3	c.C198A	p.T66T	CTCAGAGGTCACC		35	4	0.11	20	0	0				761	0	0				T	53459354	G	T	53459354	2	4	91	1	0	0	0	0	0	0	0	1	7419	987	35	3		3	HSD17B10	23	53459354	Silent	SNP	G	TCGA-SN-A6IS-01A-11D-A435-10		53459354	101811206	78	6301											
SPIN2A	54466	broad.mit.edu	37	chrX	57162583	57162583	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtgcttgagctaagaccaTccccctccattcatccttag	7	14	1	2	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	SPIN2A	NM_019003	exon2	c.A448G	p.M150V	AGACCATCCCCCT		443	5	0.01	351	1	0.0028490028		7		0	0					C	57162583	T	C	57162583	3	2	91	1	0	0	0	0	1	0	0	0	15108	1435	50	4	332	4	SPIN2A	23	57162583	Missense_Mutation	SNP	T	TCGA-SN-A6IS-01A-11D-A435-10	3703229	57162583	98107977	79	6302											
LRRC47	57470	mdanderson.org	37	chr1	3712537	3712537	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcgaaagagctcggcgggAaaggagtctaggcaattgcc	17	8	1	1	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_020710	exon1	c.T504C	p.F168F	GGCGGGAAAGGAG		29	4	0.14	42	2	0.0476190476				76	0	0				G	3712537	A	G	3712537	2	3	92	1	0	0	0	0	0	0	0	1	9048	243	9	4		4	LRRC47	1	3712537	Silent	SNP	A	TCGA-SN-A84W-01A-11D-A435-10		3712537	245538084	1	6303											
EPB41	2035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	29359661	29359661	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctagtggccttctggtttaCaaagataagctgagaattaa	9	6	2	2	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_001166006	exon9	c.C1269T	p.Y423Y	GGTTTACAAAGAT		97	36	0.37	137	0	0				55	23	0.42				T	29359661	C	T	29359661	2	4	92	1	0	0	0	0	0	0	0	1	5179	489	17	3		3	EPB41	1	29359661	Silent	SNP	C	TCGA-SN-A84W-01A-11D-A435-10	25647124	29359661	219890960	2	6304											
HIVEP3	59269	mdanderson.org	37	chr1	42049570	42049570	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggggctgcttgggtcttGgggagagctctgcagggtga	20	6	2	2	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_024503	exon4	c.C899A	p.P300Q	GGTCTTGGGGAGA		48	3	0.06	65	0	0				0	0					T	42049570	G	T	42049570	3	4	92	1	0	0	0	0	1	0	0	0	7228	1348	47	3	6345	3	HIVEP3	1	42049570	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	12689909	42049570	207201051	3	6305											
GFI1	2672	mdanderson.org	37	chr1	92946383	92946383	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagcggtggcaccggccccTgcgctgcagctccctggcgc	14	19	0	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_001127215	exon4	c.A561G	p.A187A	GGCCCCTGCGCTG		16	2	0.13	11	0	0				0	0					C	92946383	T	C	92946383	2	2	92	1	0	0	0	0	0	0	0	1	6380	1567	55	4		4	GFI1	1	92946383	Silent	SNP	T	TCGA-SN-A84W-01A-11D-A435-10	50896813	92946383	156304238	4	6306											
EDEM3	80267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	184706178	184706178	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacaagagtgtccaaagaaTcaatcagtgtcagagaaaat	8	8	3	3	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_025191	exon4	c.A326G	p.D109G	AAAGAATCAATCA		305	95	0.31	355	0	0				21	7	0.33				C	184706178	T	C	184706178	3	2	92	1	0	0	0	0	1	0	0	0	4939	1435	50	4	2540	4	EDEM3	1	184706178	Missense_Mutation	SNP	T	TCGA-SN-A84W-01A-11D-A435-10	91759795	184706178	64544443	5	6307											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	186151356	186151356	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgagtgtaagaatacctttGgaagttatcagtgcatctgc	10	6	2	2	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_031935	exon105	c.G16351A	p.G5451R	ACCTTTGGAAGTT		233	63	0.27	229	0	0				44	7	0.16				A	186151356	G	A	186151356	3	1	92	1	0	0	0	0	1	0	0	0	7260	1349	47	3	16769	3	HMCN1	1	186151356	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	1445178	186151356	63099265	6	6308											
KIF21B	23046	ucsc.edu	37	chr1	200974451	200974451	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaccaggtcgggctgggtGcacatgcgcatctggcacag	14	13	2	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	KIF21B	NM_017596	exon5	c.C717A	p.C239X	CTGGGTGCACATG		28	4	0.14	27	0	0		208		6	0	0				T	200974451	G	T	200974451	4	4	92	1	0	0	0	0	0	1	0	0	8330	1311	46	2	4277	2	KIF21B	1	200974451	Nonsense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	14823095	200974451	48276170	7	6309											
KISS1	3814	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr1	204159651	204159651	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgccgtggttccctggtgcCgcctcccgcttgccgaagcg	13	17	0	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_002256	exon3	c.G378A	p.A126A	TGGTGCCGCCTCC		62	4	0.06	74	0	0				6	0	0				T	204159651	C	T	204159651	2	4	92	1	0	0	0	0	0	0	0	1	8369	639	23	1		1	KISS1	1	204159651	Silent	SNP	C	TCGA-SN-A84W-01A-11D-A435-10	3185200	204159651	45090970	8	6310											
SLC30A1	7779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	211751852	211751852	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagtcggagagcatcgccaGcgacgaggtcacccggctca	15	13	2	1	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_021194	exon1	c.C103T	p.L35L	TCGCCAGCGACGA		53	17	0.32	57	0	0				27	10	0.37				A	211751852	G	A	211751852	2	1	92	1	0	0	0	0	0	0	0	1	14607	962	34	2		2	SLC30A1	1	211751852	Silent	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	7592201	211751852	37498769	9	6311											
NBAS	51594	broad.mit.edu	37	chr2	15359012	15359012	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatctgcagcacgtgaatgCggggccgcaccggccaggcg	15	13	1	1	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	NBAS,NS,carcinoma,-1,1	NBAS	NM_015909	exon48	c.G6317A	p.R2106H	TGAATGCGGGGCC		202	4	0.02	259	0	0		246	1	103	0	0				T	15359012	C	T	15359012	3	4	92	1	0	0	0	0	1	0	0	0	10233	768	27	1	818	1	NBAS	2	15359012	Missense_Mutation	SNP	C	TCGA-SN-A84W-01A-11D-A435-10		15359012	227840361	10	6312											
APOB	338	broad.mit.edu	37	chr2	21224911	21224911	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgcaatcttctctttcccTtttccatctggatcggtaag	6	12	4	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	APOB	NM_000384	exon29	c.A13383G	p.K4461K	TTTCCCTTTTCCA		148	3	0.02	165	1	0.0060606061		761		16	0	0				C	21224911	T	C	21224911	2	2	92	1	0	0	0	0	0	0	0	1	782	1606	56	4		4	APOB	2	21224911	Silent	SNP	T	TCGA-SN-A84W-01A-11D-A435-10	5865899	21224911	221974462	11	6313											
AGBL5	60509	mdanderson.org	37	chr2	27276346	27276346	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acattatgaacatgaacaagCagagcaagctgtattcccag	8	9	0	3	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_001035507	exon3	c.C292T	p.Q98X	AACAAGCAGAGCA		84	5	0.06	84	0	0				138	0	0				T	27276346	C	T	27276346	4	4	92	1	0	0	0	0	0	1	0	0	375	711	25	2	298	2	AGBL5	2	27276346	Nonsense_Mutation	SNP	C	TCGA-SN-A84W-01A-11D-A435-10	6051435	27276346	215923027	12	6314											
SH2D6	284948	hgsc.bcm.edu;bcgsc.ca	37	chr2	85662140	85662149	+	Frame_Shift_Del	DEL	CCCCACCCCA	CCCCACCCCA	-													tagaagccacctttgcccacCcccaccccaccccaccccac					novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	CCCCACCCCA	CCCCACCCCA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	SH2D6	NM_198482	exon1	c.61_70del	p.21_24del	GCCCACCCCCACC		277	40	0.14	354	0	0		15		0	0					-	85662149	CCCCACCCCA	-	85662140	7	5	92	1	0	1	0	1	0	0	0	0	14291	623	22	0	64	0	SH2D6	2	85662140	Frame_Shift_Del	DEL	CCCCACCCCA	TCGA-SN-A84W-01A-11D-A435-10	58385794	85662140	157537233	13	6315											
COX5B	1329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	98264520	98264520	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaggcgaggcccagcgatgCccccgctgtggagcccatta	13	14	0	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_001862	exon4	c.C339T	p.C113C	GCGATGCCCCCGC		277	72	0.26	330	0	0				624	221	0.35				T	98264520	C	T	98264520	2	4	92	1	0	0	0	0	0	0	0	1	3796	747	26	2		2	COX5B	2	98264520	Silent	SNP	C	TCGA-SN-A84W-01A-11D-A435-10	12602380	98264520	144934853	14	6316											
VWA3B	200403	mdanderson.org	37	chr2	98914394	98914394	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgaagaagtgtgtgagccGcacccaagcactggtgggct	15	9	0	3	rs146321928	bycluster;by1000genomes;alternate_allele	TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_144992	exon24	c.G3182T	p.R1061L	TGAGCCGCACCCA		53	3	0.06	55	0	0				0	0					T	98914394	G	T	98914394	3	4	92	1	0	0	0	0	1	0	0	0	17300	1087	38	1	3272	1	VWA3B	2	98914394	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	649874	98914394	144284979	15	6317											
MCM6	4175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	136633830	136633830	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggggcgctcgccgacttactCctccaagaagtccaggaaca	11	14	0	1	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_005915	exon1	c.G106A	p.E36K	CTTACTCCTCCAA		35	12	0.34	47	0	0				111	35	0.32				T	136633830	C	T	136633830	3	4	92	1	0	0	0	0	1	0	0	0	9440	869	30	3	2427	3	MCM6	2	136633830	Missense_Mutation	SNP	C	TCGA-SN-A84W-01A-11D-A435-10	37719436	136633830	106565543	16	6318											
TMEM169	92691	broad.mit.edu	37	chr2	216965047	216965047	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccatggcttcttccctcGgcctctacgctgctgtggtc	11	15	2	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	TMEM169	NM_001142310	exon4	c.G676T	p.G226C	TCCCTCGGCCTCT		136	4	0.03	167	0	0		46		6	0	0				T	216965047	G	T	216965047	3	4	92	1	0	0	0	0	1	0	0	0	16143	1116	39	1	682	1	TMEM169	2	216965047	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	80331217	216965047	26234326	17	6319											
ESPNL	339768	mdanderson.org	37	chr2	239009324	239009324	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctggccgagctgtgctgGctggtccgcgaggggggctg	20	11	0	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_194312	exon1	c.G264T	p.W88C	GTGCTGGCTGGTC		16	2	0.13	14	0	0				0	0					T	239009324	G	T	239009324	3	4	92	1	0	0	0	0	1	0	0	0	5283	1212	42	2	266	2	ESPNL	2	239009324	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	22044277	239009324	4190049	18	6320											
ZBTB11	27107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	101371663	101371663	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgagacttcacatgggaaTaccaatctttcttccaacta	5	10	3	1	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_014415	exon9	c.A2429C	p.Y810S	TGGGAATACCAAT		69	21	0.3	91	0	0				47	14	0.3				G	101371663	T	G	101371663	3	3	92	1	0	0	0	0	1	0	0	0	17582	1406	49	4	744	4	ZBTB11	3	101371663	Missense_Mutation	SNP	T	TCGA-SN-A84W-01A-11D-A435-10		101371663	96650767	19	6321											
GATA2	2624	mdanderson.org	37	chr3	128200738	128200738	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcggcgccataaggtggtgGttgtcgtctgacaatttgca	13	8	1	1	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_032638	exon5	c.C1067A	p.T356N	GTGGTGGTTGTCG		101	5	0.05	113	0	0				323	0	0				T	128200738	G	T	128200738	3	4	92	1	0	0	0	0	1	0	0	0	6293	1261	44	3	383	3	GATA2	3	128200738	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	26829075	128200738	69821692	20	6322											
PLXND1	23129	mdanderson.org	37	chr3	129275264	129275264	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggttggcctccagcgcgGccatgatctgaggggagcag	18	10	1	2	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	PLXND1,caecum,carcinoma,-1,1	PLXND1	NM_015103	exon36	c.C5669A	p.A1890D	AGCGCGGCCATGA		104	5	0.05	103	0	0		-1	1	579	0	0				T	129275264	G	T	129275264	3	4	92	1	0	0	0	0	1	0	0	0	12174	1203	42	2	112	2	PLXND1	3	129275264	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	1074526	129275264	68747166	21	6323											
SI	6476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	164777693	164777693	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctttattctacttacaaaTggtatgccagcttcccggtt	6	12	1	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_001041	exon10	c.A1143G	p.P381P	TACAAATGGTATG		93	31	0.33	82	0	0				14	4	0.29				C	164777693	T	C	164777693	2	2	92	1	0	0	0	0	0	0	0	1	14351	1451	51	4		4	SI	3	164777693	Silent	SNP	T	TCGA-SN-A84W-01A-11D-A435-10	35502429	164777693	33244737	22	6324											
PHOX2B	8929	mdanderson.org	37	chr4	41747890	41747890	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttggagcgaagataggacGctggcgaagggacccccaag	15	10	0	1	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_003924	exon3	c.C879A	p.S293R	TAGGACGCTGGCG		47	3	0.06	69	0	0				0	0					T	41747890	G	T	41747890	3	4	92	1	0	0	0	0	1	0	0	0	11906	1078	38	1	69	1	PHOX2B	4	41747890	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10		41747890	149406386	23	6325											
CENPE	1062	mdanderson.org	37	chr4	104070563	104070563	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttttcttggagttgctgGctcttaaaatgcacaatttt	8	6	2	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_001813	exon27	c.C3399A	p.S1133R	TTGCTGGCTCTTA		33	3	0.09	62	1	0.0161290323				12	0	0				T	104070563	G	T	104070563	3	4	92	1	0	0	0	0	1	0	0	0	3252	1194	42	2	4798	2	CENPE	4	104070563	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	62322673	104070563	87083713	24	6326											
TRPC3	7222	broad.mit.edu;bcgsc.ca	37	chr4	122853966	122853966	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacagccagctgcagcgcGttctggcccatgtagtccac	10	17	1	0	rs199887234	alternate_allele	TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	TRPC3	NM_001130698	exon2	c.C447A	p.N149K	CAGCGCGTTCTGG		104	6	0.06	160	0	0		201		2	0	0				T	122853966	G	T	122853966	3	4	92	1	0	0	0	0	1	0	0	0	16639	1136	40	1	2362	1	TRPC3	4	122853966	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	18783403	122853966	68300310	25	6327											
ARHGAP10	79658	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	148802993	148802993	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgattatttgcagggggAcggagaggtgttctttttga	14	3	1	3	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	ARHGAP10	NM_024605	exon10	c.A944G	p.D315G	AGGGGGACGGAGA		56	4	0.07	82	0	0		92		36	0	0				G	148802993	A	G	148802993	3	3	92	1	0	0	0	0	1	0	0	0	859	275	10	4	982	4	ARHGAP10	4	148802993	Missense_Mutation	SNP	A	TCGA-SN-A84W-01A-11D-A435-10	25949027	148802993	42351283	26	6328											
MOCS2	4338	mdanderson.org	37	chr5	52404454	52404454	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgttatttcagcactttttGcaaaatacaatacttcaacc	3	10	2	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_176806	exon2	c.C38T	p.A13V	CTTTTTGCAAAAT		45	3	0.07	79	0	0				94	0	0				A	52404454	G	A	52404454	3	1	92	1	0	0	0	0	1	0	0	0	9739	1319	46	2	739	2	MOCS2	5	52404454	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10		52404454	128510806	27	6329											
TTC37	9652	mdanderson.org	37	chr5	94803686	94803686	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cactctttccaaaagacgccGtgtctctctggaaaaaaaaa	6	11	3	1	rs372395062	alternate_allele	TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_014639	exon42	c.C4504A	p.R1502R	GACGCCGTGTCTC		41	3	0.07	79	0	0				152	0	0				T	94803686	G	T	94803686	2	4	92	1	0	0	0	0	0	0	0	1	16766	1144	40	1		1	TTC37	5	94803686	Silent	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	42399232	94803686	86111574	28	6330											
CAMK4	814	mdanderson.org	37	chr5	110730442	110730442	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatattacagtgagcgagatGctgcagatgccgttaaacaa	11	7	0	3	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_001744	exon5	c.G421T	p.A141S	CGAGATGCTGCAG		43	3	0.07	87	1	0.0114942529				17	0	0				T	110730442	G	T	110730442	3	4	92	1	0	0	0	0	1	0	0	0	2623	1319	46	2	439	2	CAMK4	5	110730442	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	15926756	110730442	70184818	29	6331											
ADAM19	8728	hgsc.bcm.edu	37	chr5	156915307	156915307	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatttggtgcggggggaattGgccggcttggaggaggcctc	19	7	0	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_033274	exon21	c.C2516A	p.P839Q	GGAATTGGCCGGC		88	4	0.05	137	0	0				32	0	0				T	156915307	G	T	156915307	3	4	92	1	0	0	0	0	1	0	0	0	239	1348	47	3	252	3	ADAM19	5	156915307	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	46184865	156915307	23999953	30	6332											
ABCF1	23	mdanderson.org	37	chr6	30552321	30552321	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaagttctcagggggctggCgcatgcgtgtctccctggcc	15	12	2	1	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_001025091	exon14	c.C1369T	p.R457C	GGCTGGCGCATGC		48	3	0.06	45	0	0				139	0	0				T	30552321	C	T	30552321	3	4	92	1	0	0	0	0	1	0	0	0	65	768	27	1	1423	1	ABCF1	6	30552321	Missense_Mutation	SNP	C	TCGA-SN-A84W-01A-11D-A435-10		30552321	140562746	31	6333											
COL12A1	1303	mdanderson.org	37	chr6	75798829	75798829	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagcaaacctacctgggggGccaggcagcccccgaggtcc	13	16	0	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_004370	exon64	c.C9003A	p.G3001G	TGGGGGGCCAGGC		38	3	0.08	49	0	0				242	1	0				T	75798829	G	T	75798829	2	4	92	1	0	0	0	0	0	0	0	1	3692	1190	42	2		2	COL12A1	6	75798829	Silent	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	45246508	75798829	95316238	32	6334											
FERD3L	222894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	19184670	19184670	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcctttcgcggatgttggCggcctggcgctgggcgtagg	17	11	0	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	FERD3L,NS,carcinoma,0,1	FERD3L	NM_152898	exon1	c.G316A	p.A106T	TGTTGGCGGCCTG		104	37	0.36	108	0	0		0	1	0	0					T	19184670	C	T	19184670	3	4	92	1	0	0	0	0	1	0	0	0	5848	768	27	1	188	1	FERD3L	7	19184670	Missense_Mutation	SNP	C	TCGA-SN-A84W-01A-11D-A435-10		19184670	139953993	33	6335											
MEPCE	56257	mdanderson.org	37	chr7	100028001	100028001	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggagcgccggggagggggCgggacagagctgggtccccc	22	11	0	1	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_019606	exon1	c.C360G	p.G120G	AGGGGGCGGGACA		15	3	0.2	10	0	0				8	0	0				G	100028001	C	G	100028001	2	3	92	1	0	0	0	0	0	0	0	1	9526	755	27	5		5	MEPCE	7	100028001	Silent	SNP	C	TCGA-SN-A84W-01A-11D-A435-10	80843331	100028001	59110662	34	6336											
PCOLCE	5118	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	100203305	100203305	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcccgccgccaggtcatcGcgctgaccttcgagaagttt	11	16	1	2	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_002593	exon5	c.G595A	p.A199T	GTCATCGCGCTGA		204	58	0.28	237	0	0				1555	459	0.3				A	100203305	G	A	100203305	3	1	92	1	0	0	0	0	1	0	0	0	11640	1087	38	1	613	1	PCOLCE	7	100203305	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	175304	100203305	58935358	35	6337											
REPIN1	29803	mdanderson.org	37	chr7	150068974	150068974	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agccaaggctctggggccccGgcccaggggccgccccgcgg	17	18	1	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_001099695	exon3	c.G815T	p.R272L	GGCCCCGGCCCAG		36	3	0.08	37	0	0				91	0	0				T	150068974	G	T	150068974	3	4	92	1	0	0	0	0	1	0	0	0	13278	1116	39	1	821	1	REPIN1	7	150068974	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	49865669	150068974	9069689	36	6338											
ZHX2	22882	broad.mit.edu	37	chr8	123966158	123966158	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacggtcggggaggaggatgCgatctcagatagatcagata	16	6	2	3	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	ZHX2	NM_014943	exon3	c.C2408T	p.A803V	AGGATGCGATCTC		165	5	0.03	148	0	0		106		62	0	0				T	123966158	C	T	123966158	3	4	92	1	0	0	0	0	1	0	0	0	17733	768	27	1	2410	1	ZHX2	8	123966158	Missense_Mutation	SNP	C	TCGA-SN-A84W-01A-11D-A435-10		123966158	22397864	37	6339											
PRSS3	5646	ucsc.edu	37	chr9	33798037	33798037	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acccctccagctgctggcacTgagtgcctcatctccggctg	10	17	2	1	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	PRSS3_ENST00000361005,NS,carcinoma,0,3	PRSS3	NM_007343	exon3	c.T582C	p.T194T	TGGCACTGAGTGC		100	3	0.03	125	0	0		79	3	45	30	0.67	rescued with RNA-seq			C	33798037	T	C	33798037	2	2	92	1	0	0	0	0	0	0	0	1	12670	1567	55	4		4	PRSS3	9	33798037	Silent	SNP	T	TCGA-SN-A84W-01A-11D-A435-10		33798037	107415394	38	6340											
SPTAN1	6709	mdanderson.org	37	chr9	131337577	131337577	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aaacagatatggctgctcatGaagaaagagttaatgaagtg	11	4	1	5	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_003127	exon5	c.G604T	p.E202X	GCTCATGAAGAAA		45	4	0.09	64	0	0				67	0	0				T	131337577	G	T	131337577	4	4	92	1	0	0	0	0	0	1	0	0	15172	1291	45	3	618	3	SPTAN1	9	131337577	Nonsense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	97539540	131337577	9875854	39	6341											
CHST3	9469	mdanderson.org	37	chr10	73768166	73768166	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacaaactggcgcgggacgcCgccgccctcaccaaccgctc	10	19	1	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_004273	exon3	c.C1377T	p.A459A	GGACGCCGCCGCC		31	3	0.1	55	0	0				5	0	0				T	73768166	C	T	73768166	2	4	92	1	0	0	0	0	0	0	0	1	3427	639	23	1		1	CHST3	10	73768166	Silent	SNP	C	TCGA-SN-A84W-01A-11D-A435-10		73768166	61766581	40	6342											
SEC24C	9632	broad.mit.edu;mdanderson.org	37	chr10	75519799	75519799	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caccaacatcgctggcttcaGcctcaggaagtttccctaac	7	15	2	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	SEC24C	NM_004922	exon6	c.G505T	p.A169S	GCTTCAGCCTCAG		47	3	0.06	94	0	0		86		119	0	0				T	75519799	G	T	75519799	3	4	92	1	0	0	0	0	1	0	0	0	14049	971	34	2	519	2	SEC24C	10	75519799	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	1751633	75519799	60014948	41	6343											
C10orf129	142827	mdanderson.org	37	chr10	96988497	96988497	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acggctacttctggtggtctGgtagagttgatgatgttgcc	14	7	2	3	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_207321	exon11	c.G1399T	p.G467C	TGGTCTGGTAGAG		46	3	0.07	82	0	0				2	0	0				T	96988497	G	T	96988497	3	4	92	1	0	0	0	0	1	0	0	0	1597	1348	47	3	1437	3	C10orf129	10	96988497	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	21468698	96988497	38546250	42	6344											
PDCD11	22984	mdanderson.org	37	chr10	105160234	105160234	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaaagttgaaaatcgaaaaGagagaaagcagcaagtccgc	10	6	0	3	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	PDCD11,NS,carcinoma,0,1	PDCD11	NM_014976	exon3	c.G183T	p.K61N	CGAAAAGAGAGAA		39	3	0.08	86	0	0		0	1	46	0	0				T	105160234	G	T	105160234	3	4	92	1	0	0	0	0	1	0	0	0	11663	933	33	3	189	3	PDCD11	10	105160234	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	8171737	105160234	30374513	43	6345											
GPR123	84435	mdanderson.org	37	chr10	134912177	134912177	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agccgcaagggccggcacacGctcctgaatttctgcttcca	10	15	1	1	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_001083909	exon4	c.G165T	p.T55T	GCACACGCTCCTG		33	3	0.09	44	0	0				3	0	0				T	134912177	G	T	134912177	2	4	92	1	0	0	0	0	0	0	0	1	6676	1074	38	1		1	GPR123	10	134912177	Silent	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	29751943	134912177	622570	44	6346											
PHRF1	57661	mdanderson.org	37	chr11	607812	607812	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaatattcctggaaacatgGcacattccagccagctctcc	6	14	2	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_020901	exon14	c.G2353T	p.A785S	AACATGGCACATT		59	4	0.07	75	0	0				78	0	0				T	607812	G	T	607812	3	4	92	1	0	0	0	0	1	0	0	0	11908	1203	42	2	2403	2	PHRF1	11	607812	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10		607812	134398704	45	6347											
ATG2A	23130	mdanderson.org	37	chr11	64679873	64679873	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaggagcaggtgcagggagCccagctgtcccgccacctcc	13	16	1	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_015104	exon7	c.G848A	p.G283D	AGGGAGCCCAGCT		20	3	0.15	62	0	0				27	0	0				T	64679873	C	T	64679873	3	4	92	1	0	0	0	0	1	0	0	0	1092	739	26	2	5108	2	ATG2A	11	64679873	Missense_Mutation	SNP	C	TCGA-SN-A84W-01A-11D-A435-10	64072061	64679873	70326643	46	6348											
MAP3K11	4296	mdanderson.org	37	chr11	65367071	65367071	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actccccgcgctcgcgtcctGggcctcccggcggctgcagg	14	19	0	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_002419	exon9	c.C2000A	p.P667Q	CGTCCTGGGCCTC		20	2	0.1	28	0	0				17	0	0				T	65367071	G	T	65367071	3	4	92	1	0	0	0	0	1	0	0	0	9294	1348	47	3	551	3	MAP3K11	11	65367071	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	687198	65367071	69639445	47	6349											
RBM14	10432	mdanderson.org	37	chr11	66392959	66392959	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagcatccccaggctgctGcctcctaccgcggccagcca	10	19	0	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_006328	exon2	c.G1612T	p.A538S	GCTGCTGCCTCCT		47	3	0.06	69	1	0.0144927536				173	0	0				T	66392959	G	T	66392959	3	4	92	1	0	0	0	0	1	0	0	0	13166	1319	46	2	1618	2	RBM14	11	66392959	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	1025888	66392959	68613557	48	6350											
RBM4B	83759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	66436560	66436560	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtaatacatggattccccGtagcccatggtgtaaggtgt	11	8	0	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_031492	exon3	c.C615T	p.Y205Y	TTCCCCGTAGCCC		78	34	0.44	164	0	0				43	26	0.6				A	66436560	G	A	66436560	2	1	92	1	0	0	0	0	0	0	0	1	13193	1140	40	1		1	RBM4B	11	66436560	Silent	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	43601	66436560	68569956	49	6351											
DLG2	1740	mdanderson.org	37	chr11	84996380	84996380	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acaacttttttgagaatttaGcaatgtcacctcataaaatt	4	7	2	1	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_001142699	exon4	c.C70A	p.L24I	AATTTAGCAATGT		50	4	0.08	92	0	0				2	0	0				T	84996380	G	T	84996380	3	4	92	1	0	0	0	0	1	0	0	0	4583	962	34	2	3162	2	DLG2	11	84996380	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	18559820	84996380	50010136	50	6352											
DDX25	29118	mdanderson.org	37	chr11	125787112	125787112	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtgcaacatttatggcaGcatcaccattggtcaggcca	9	11	3	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_013264	exon9	c.G1004T	p.S335I	ATGGCAGCATCAC		41	3	0.07	61	0	0				7	0	0				T	125787112	G	T	125787112	3	4	92	1	0	0	0	0	1	0	0	0	4375	971	34	2	1038	2	DDX25	11	125787112	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	40790732	125787112	9219404	51	6353											
UTP20	27340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	101763603	101763603	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aaacacctcttccttctgctGaaggactatgcaaagctcgg	8	12	2	1	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	UTP20,NS,carcinoma,0,1	UTP20	NM_014503	exon49	c.G6489A	p.L2163L	TCTGCTGAAGGAC		95	6	0.06	91	0	0		0	1	51	5	0.1				A	101763603	G	A	101763603	2	1	92	1	0	0	0	0	0	0	0	1	17158	1277	45	3		3	UTP20	12	101763603	Silent	SNP	G	TCGA-SN-A84W-01A-11D-A435-10		101763603	32088292	52	6354											
PSMB11	122706	mdanderson.org	37	chr14	23511880	23511880	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatctctgtgtggccactgCcctctgcggctgggaccgct	14	14	2	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_001099780	exon1	c.C446T	p.A149V	CCACTGCCCTCTG		37	3	0.08	52	0	0				0	0					T	23511880	C	T	23511880	3	4	92	1	0	0	0	0	1	0	0	0	12724	739	26	2	448	2	PSMB11	14	23511880	Missense_Mutation	SNP	C	TCGA-SN-A84W-01A-11D-A435-10		23511880	83837660	53	6355											
MAP2K5	5607	mdanderson.org	37	chr15	67835784	67835784	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggacagtgcactccgggccGcagttactcttcagggatgt	13	11	2	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_002757	exon1	c.G111T	p.P37P	CGGGCCGCAGTTA		55	3	0.05	91	0	0				44	0	0				T	67835784	G	T	67835784	2	4	92	1	0	0	0	0	0	0	0	1	9289	1074	38	1		1	MAP2K5	15	67835784	Silent	SNP	G	TCGA-SN-A84W-01A-11D-A435-10		67835784	34695608	54	6356											
NEIL1	79661	ucsc.edu	37	chr15	75646087	75646087	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctgtcccacagggggcaaAggctacgggtcagagagcgg	16	11	2	1	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	NEIL1	NM_001256552	exon6	c.A984G	p.K328K	GGGCAAAGGCTAC		85	1	0.01	85	0	0		36		20	9	0.45				G	75646087	A	G	75646087	2	3	92	1	0	0	0	0	0	0	0	1	10364	69	3	4		4	NEIL1	15	75646087	Silent	SNP	A	TCGA-SN-A84W-01A-11D-A435-10	7810303	75646087	26885305	55	6357											
ADAMTS17	170691	mdanderson.org	37	chr15	100821452	100821452	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	accatgttcatgacggtcagGatgaacctctgggcggcctc	12	12	3	2	rs143055688	bycluster;by1000genomes;alternate_allele	TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_139057	exon4	c.C771A	p.I257I	GGTCAGGATGAAC		24	3	0.13	21	0	0				9	0	0				T	100821452	G	T	100821452	2	4	92	1	0	0	0	0	0	0	0	1	261	1164	41	3		3	ADAMTS17	15	100821452	Silent	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	25175365	100821452	1709940	56	6358											
MRPS34	65993	mdanderson.org	37	chr16	1822889	1822889	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacttgcgcgtgaccaggcGgcccaggccgaagagcggga	18	12	0	2	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_023936	exon1	c.C232A	p.R78S	CCAGGCGGCCCAG		11	2	0.18	11	0	0				104	0	0				T	1822889	G	T	1822889	3	4	92	1	0	0	0	0	1	0	0	0	9891	1116	39	1	436	1	MRPS34	16	1822889	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10		1822889	88531864	57	6359											
PKD1	5310	mdanderson.org	37	chr16	2165409	2165409	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggggggccccgcgggaacGgagaagaggaactctctcca	17	12	1	2	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_001009944	exon10	c.C2067A	p.S689S	GGGAACGGAGAAG		36	3	0.08	53	0	0				90	0	0				T	2165409	G	T	2165409	2	4	92	1	0	0	0	0	0	0	0	1	12010	1103	39	1		1	PKD1	16	2165409	Silent	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	342520	2165409	88189344	58	6360											
SRRM2	23524	broad.mit.edu	37	chr16	2817298	2817298	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaacagcagtgaacctgGctgactctcgaacgccagct	9	14	1	2	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	SRRM2	NM_016333	exon11	c.G6769T	p.A2257S	AACCTGGCTGACT		70	6	0.09	64	2	0.03125		263		858	50	0.06				T	2817298	G	T	2817298	3	4	92	1	0	0	0	0	1	0	0	0	15224	1203	42	2	6807	2	SRRM2	16	2817298	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	651889	2817298	87537455	59	6361											
MYH10	4628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	8404192	8404193	+	Frame_Shift_Del	DEL	GT	GT	-													agctcctccagggctgttgcGtgtctttgtctcatgtcctg					novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	GT	GT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	MYH10	NM_001256012	exon29	c.3696_3697del	p.1232_1233del	TGTTGCGTGTCTT		80	27	0.34	68	0	0		148		336	0	0				-	8404193	GT	-	8404192	7	5	92	1	0	1	0	1	0	0	0	0	10077	1136	40	0	2387	0	MYH10	17	8404192	Frame_Shift_Del	DEL	GT	TCGA-SN-A84W-01A-11D-A435-10		8404192	72791018	60	6362											
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	27441062	27441063	+	Frame_Shift_Del	DEL	CA	CA	-													gaggcctggtccacagcagcCacagagtcatccgtcggggg					novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	CA	CA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	MYO18A	NM_078471	exon15	c.2565_2566del	p.855_856del	AGCAGCCACAGAG		53	18	0.34	75	0	0		217		30	0	0				-	27441063	CA	-	27441062	7	5	92	1	0	1	0	1	0	0	0	0	10112	581	21	0	3711	0	MYO18A	17	27441062	Frame_Shift_Del	DEL	CA	TCGA-SN-A84W-01A-11D-A435-10	19036870	27441062	53754148	61	6363											
ABHD15	116236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	27893554	27893554	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatccggcggccccgaacaCaaggtcctaccacccagtcc	9	18	0	1	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_198147	exon1	c.G431A	p.C144Y	CGAACACAAGGTC		72	21	0.29	52	0	0				18	3	0.17				T	27893554	C	T	27893554	3	4	92	1	0	0	0	0	1	0	0	0	81	478	17	3	983	3	ABHD15	17	27893554	Missense_Mutation	SNP	C	TCGA-SN-A84W-01A-11D-A435-10	452492	27893554	53301656	62	6364											
PTRF	284119	mdanderson.org	37	chr17	40556822	40556822	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggcctccccgcgctccgcGccgccctcgtcgtcgtcggc	12	23	0	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_012232	exon2	c.C1056A	p.G352G	CTCCGCGCCGCCC		61	3	0.05	67	0	0				255	1	0				T	40556822	G	T	40556822	2	4	92	1	0	0	0	0	0	0	0	1	12866	1074	38	1		1	PTRF	17	40556822	Silent	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	12663268	40556822	40638388	63	6365											
C17orf64	124773	mdanderson.org	37	chr17	58504167	58504167	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acaccaagagcagccagccgGccaagttcctggtgaggcgc	13	14	0	2	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_181707	exon4	c.G418A	p.A140T	CAGCCGGCCAAGT		48	3	0.06	30	0	0				0	0					A	58504167	G	A	58504167	3	1	92	1	0	0	0	0	1	0	0	0	1881	1203	42	2	432	2	C17orf64	17	58504167	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	17947345	58504167	22691043	64	6366											
C17orf70	80233	broad.mit.edu;mdanderson.org	37	chr17	79517782	79517782	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acacagcagagctggccatcAgggagaccacagaggaccac	12	13	1	3	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	C17orf70	NM_025161	exon3	c.T738C	p.P246P	GCCATCAGGGAGA		51	3	0.06	71	0	0		79		122	0	0				G	79517782	A	G	79517782	2	3	92	1	0	0	0	0	0	0	0	1	1886	175	7	4		4	C17orf70	17	79517782	Silent	SNP	A	TCGA-SN-A84W-01A-11D-A435-10	21013615	79517782	1677428	65	6367											
EMILIN2	84034	mdanderson.org	37	chr18	2891184	2891184	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctcactggcctccagcaGcagtgtgatgactatgggag	13	10	1	2	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_032048	exon4	c.G1059T	p.Q353H	CCAGCAGCAGTGT		43	3	0.07	62	1	0.0161290323				22	0	0				T	2891184	G	T	2891184	3	4	92	1	0	0	0	0	1	0	0	0	5122	962	34	2	1073	2	EMILIN2	18	2891184	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10		2891184	75186064	66	6368											
ZFR2	23217	broad.mit.edu	37	chr19	3827569	3827569	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcgcctgcaccccgcgcGggctcccgttgggctgcacg	15	18	0	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	ZFR2	NM_015174	exon6	c.C935A	p.P312Q	CCGCGCGGGCTCC		171	4	0.02	176	0	0		63		1	0	0				T	3827569	G	T	3827569	3	4	92	1	0	0	0	0	1	0	0	0	17717	1116	39	1	1940	1	ZFR2	19	3827569	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10		3827569	55301414	67	6369											
COL5A3	50509	broad.mit.edu	37	chr19	10097403	10097403	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctcaccttctcgcctttcTccccctggaggccccggttg	8	19	3	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	COL5A3	NM_015719	exon28	c.A2177G	p.E726G	CCTTTCTCCCCCT		152	13	0.09	173	7	0.0404624277		243		43	0	0				C	10097403	T	C	10097403	3	2	92	1	0	0	0	0	1	0	0	0	3721	1551	54	4	3220	4	COL5A3	19	10097403	Missense_Mutation	SNP	T	TCGA-SN-A84W-01A-11D-A435-10	6269834	10097403	49031580	68	6370											
ZNF653	115950	mdanderson.org	37	chr19	11616497	11616497	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gactccgtgagtcgcggccgGccccgcgcctttcggcccgc	14	19	0	1	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_138783	exon1	c.C105A	p.G35G	CGGCCGGCCCCGC		10	3	0.3	11	0	0				6	0	0				T	11616497	G	T	11616497	2	4	92	1	0	0	0	0	0	0	0	1	18122	1190	42	2		2	ZNF653	19	11616497	Silent	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	1519094	11616497	47512486	69	6371											
DDX49	54555	mdanderson.org	37	chr19	19035692	19035692	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccacctctgcctccaggGgcctggacatccctacggta	10	17	1	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_019070	exon9	c.G931T	p.G311C	TCCAGGGGCCTGG		27	3	0.11	41	0	0				157	0	0				T	19035692	G	T	19035692	3	4	92	1	0	0	0	0	1	0	0	0	4389	1246	43	3	965	3	DDX49	19	19035692	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	7419195	19035692	40093291	70	6372											
SPTBN4	57731	mdanderson.org	37	chr19	41009747	41009747	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actgccccaggacaactttgGgtatgagctgcccgcagtgg	13	12	0	1	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_020971	exon12	c.G1373T	p.G458V	ACTTTGGGTATGA		42	3	0.07	56	0	0				3	0	0				T	41009747	G	T	41009747	3	4	92	1	0	0	0	0	1	0	0	0	15176	1232	43	3	1415	3	SPTBN4	19	41009747	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	21974055	41009747	18119236	71	6373											
KLC3	147700	mdanderson.org	37	chr19	45849859	45849859	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcagagaagcagcggctgCgctcgcaggcccggcggctg	18	13	0	1	rs372402110		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_177417	exon3	c.C316T	p.R106C	CGGCTGCGCTCGC		20	3	0.15	30	0	0				5	0	0				T	45849859	C	T	45849859	3	4	92	1	0	0	0	0	1	0	0	0	8377	768	27	1	322	1	KLC3	19	45849859	Missense_Mutation	SNP	C	TCGA-SN-A84W-01A-11D-A435-10	4840112	45849859	13279124	72	6374											
NOSIP	51070	ucsc.edu	37	chr19	50060501	50060501	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggtgccccgctgcttctcGtaggcctgcgtcggggaaag	16	13	1	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	NOSIP,NS,carcinoma,0,1	NOSIP	NM_015953	exon6	c.C264A	p.Y88X	CTTCTCGTAGGCC		35	4	0.11	46	0	0		28	1	263	0	0				T	50060501	G	T	50060501	4	4	92	1	0	0	0	0	0	1	0	0	10591	1140	40	1	661	1	NOSIP	19	50060501	Nonsense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	4210642	50060501	9068482	73	6375											
POLD1	5424	mdanderson.org	37	chr19	50910291	50910291	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtactgcctgaaggatGcctacctgccactgcggctg	12	13	0	1	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_002691	exon13	c.G1546T	p.A516S	AAGGATGCCTACC		46	3	0.07	46	0	0				73	0	0				T	50910291	G	T	50910291	3	4	92	1	0	0	0	0	1	0	0	0	12237	1319	46	2	1592	2	POLD1	19	50910291	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	849790	50910291	8218692	74	6376											
U2AF2	11338	mdanderson.org	37	chr19	56180496	56180496	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggggataagaagctgctGgtccagagggcgagtgtggg	20	6	0	2	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_001012478	exon10	c.G993T	p.L331L	GCTGCTGGTCCAG		49	3	0.06	91	0	0				610	0	0				T	56180496	G	T	56180496	2	4	92	1	0	0	0	0	0	0	0	1	16883	1335	47	3		3	U2AF2	19	56180496	Silent	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	5270205	56180496	2948487	75	6377											
BCL2L1	598	broad.mit.edu	37	chr20	30309595	30309595	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccccgccgaaggagaaaaAggccacaatgcgaccccagt	11	14	0	1	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	BCL2L1	NM_138578	exon2	c.T427C	p.F143L	AGAAAAAGGCCAC		220	3	0.01	240	1	0.0041666667		23		412	1	0				G	30309595	A	G	30309595	3	3	92	1	0	0	0	0	1	0	0	0	1365	72	3	4	282	4	BCL2L1	20	30309595	Missense_Mutation	SNP	A	TCGA-SN-A84W-01A-11D-A435-10		30309595	32715925	76	6378											
MICAL3	57553	broad.mit.edu	37	chr22	18314645	18314645	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggactcttcctcctcctcGtcatagtcctcctcctcctc	4	20	2	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	MICAL3	NM_015241	exon21	c.C3030A	p.D1010E	CTCCTCGTCATAG		86	3	0.03	144	0	0		53		4	0	0				T	18314645	G	T	18314645	3	4	92	1	0	0	0	0	1	0	0	0	9618	1136	40	1	3026	1	MICAL3	22	18314645	Missense_Mutation	SNP	G	TCGA-SN-A84W-01A-11D-A435-10		18314645	32989921	77	6379											
FAM9A	171482	mdanderson.org	37	chrX	8763195	8763195	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctccttctcctcctcctcctCcttcttctccttcttctcct	0	22	5	0	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_174951	exon7	c.G755A	p.G252E	CCTCCTCCTTCTT		36	3	0.08	18	0	0				0	0					T	8763195	C	T	8763195	3	4	92	1	0	0	0	0	1	0	0	0	5691	855	30	3	255	3	FAM9A	23	8763195	Missense_Mutation	SNP	C	TCGA-SN-A84W-01A-11D-A435-10		8763195	146507365	78	6380											
SPIN2A	54466	broad.mit.edu	37	chrX	57162583	57162583	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtgcttgagctaagaccaTccccctccattcatccttag	7	14	1	2	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	SPIN2A	NM_019003	exon2	c.A448G	p.M150V	AGACCATCCCCCT		667	7	0.01	389	1	0.0025706941		7		0	0					C	57162583	T	C	57162583	3	2	92	1	0	0	0	0	1	0	0	0	15108	1435	50	4	332	4	SPIN2A	23	57162583	Missense_Mutation	SNP	T	TCGA-SN-A84W-01A-11D-A435-10	48399388	57162583	98107977	79	6381											
ARHGAP4	393	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	153174596	153174596	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtccagagggtcccatGgcctcaggtgaggtgcatgg	16	10	1	2	novel		TCGA-SN-A84W-01A-11D-A435-10	TCGA-SN-A84W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7cc41d24-e0f3-46ee-a8a3-52a28666742b	b4c25462-07cf-4f0c-a865-a6dcc36a802b	.	.	NM_001164741	exon22	c.C2655A	p.A885A	TCCCATGGCCTCA		61	5	0.08	40	0	0				70	0	0				T	153174596	G	T	153174596	2	4	92	1	0	0	0	0	0	0	0	1	882	1335	47	3		3	ARHGAP4	23	153174596	Silent	SNP	G	TCGA-SN-A84W-01A-11D-A435-10	96012013	153174596	2095964	80	6382											
SEC22B	9554	broad.mit.edu	37	chr1	145109259	145109260	+	RNA	INS	-	-	A													atgccactgcactccagcccINSgggggcagagcgagactccg					rs11386827	bycluster;by1000genomes	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	.	.	.	.	CCAGCCCGGGGGC		7	3	0.43	5	0	0				1	0	0				A	145109260	-	A	145109259	6	5	93	0	1	1	1	0	0	0	0	0	14042	667	23	0		0	SEC22B	1	145109259	RNA	INS	-	TCGA-SN-A84X-01A-11D-A435-10		145109259	104141362	1	6383											
FLG	2312	broad.mit.edu;mdanderson.org	37	chr1	152276832	152276832	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctagagctgtccgcctgagtGgaagcttcatggtgatgcga	14	9	1	3	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	FLG	NM_002016	exon3	c.C10530G	p.S3510S	CTGAGTGGAAGCT		86	4	0.05	82	0	0		900		102	0	0				C	152276832	G	C	152276832	2	2	93	1	0	0	0	0	0	0	0	1	5954	1335	47	5		5	FLG	1	152276832	Silent	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	7167573	152276832	96973789	2	6384											
FLG	2312	ucsc.edu	37	chr1	152281562	152281562	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctggaagcagacccagaccAcctctcagagtcttctgagt	9	13	4	4	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	A	A					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	FLG,NS,carcinoma,+2,1	FLG	NM_002016	exon3	c.T5800C	p.W1934R	CAGACCACCTCTC		202	1	0	155	1	0.0064516129		900	1	28	24	0.86				G	152281562	A	G	152281562	3	3	93	1	0	0	0	0	1	0	0	0	5954	159	6	4	6389	4	FLG	1	152281562	Missense_Mutation	SNP	A	TCGA-SN-A84X-01A-11D-A435-10	4730	152281562	96969059	3	6385											
MUC1	4582	broad.mit.edu	37	chr1	155161799	155161799	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gacatcgtgggctggcggggTggtggagcccagggctggcc	21	10	0	0	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	MUC1	NM_001204286	exon2	c.A361C	p.T121P	GCGGGGTGGTGGA		47	11	0.23	27	7	0.2592592593		94		8	0	0				G	155161799	T	G	155161799	3	3	93	1	0	0	0	0	1	0	0	0	10017	1711	59	4		4	MUC1	1	155161799	Missense_Mutation	SNP	T	TCGA-SN-A84X-01A-11D-A435-10	2880237	155161799	94088822	4	6386											
NR1I3	9970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	161200952	161200952	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	caagagcacatactcaggctCttggagctgcagttttcgta	10	10	2	1	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001077478	exon7	c.G778A	p.E260K	CAGGCTCTTGGAG		146	36	0.25	107	0	0				0	0					T	161200952	C	T	161200952	3	4	93	1	0	0	0	0	1	0	0	0	10668	922	32	3	402	3	NR1I3	1	161200952	Missense_Mutation	SNP	C	TCGA-SN-A84X-01A-11D-A435-10	6039153	161200952	88049669	5	6387											
C2orf16	84226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	27804669	27804669	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cctctgagagaagccatcacAgtccctctgagagaagacat	9	12	3	5	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_032266	exon1	c.A5230T	p.S1744C	CATCACAGTCCCT		98	31	0.32	73	0	0				0	0					T	27804669	A	T	27804669	3	4	93	1	0	0	0	0	1	0	0	0	2171	188	7	5	5232	5	C2orf16	2	27804669	Missense_Mutation	SNP	A	TCGA-SN-A84X-01A-11D-A435-10		27804669	215394704	6	6388											
CSRNP3	80034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	166514444	166514444	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcgccagtacactcttggcGagtttgcaagggagcaggag	15	9	1	0	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	CSRNP3,NS,carcinoma,0,1	CSRNP3	NM_001172173	exon5	c.G322A	p.E108K	CTTGGCGAGTTTG		168	65	0.39	154	0	0		0	1	0	0					A	166514444	G	A	166514444	3	1	93	1	0	0	0	0	1	0	0	0	3990	1059	37	1	328	1	CSRNP3	2	166514444	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	138709775	166514444	76684929	7	6389											
FAM117B	150864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	203591019	203591019	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaagtaaacacagcagtcGgcatcatcgagataaagaaa	10	7	1	3	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_173511	exon4	c.G893A	p.R298Q	GCAGTCGGCATCA		232	96	0.41	242	0	0				1	1	1				A	203591019	G	A	203591019	3	1	93	1	0	0	0	0	1	0	0	0	5441	1116	39	1	907	1	FAM117B	2	203591019	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	37076575	203591019	39608354	8	6390											
VIL1	7429	mdanderson.org	37	chr2	219301338	219301338	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatgtgttcctactagatGtctgggaccaggtaggacca	12	8	1	2	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_007127	exon16	c.G1960T	p.V654F	CTAGATGTCTGGG		89	5	0.06	64	0	0				1	0	0				T	219301338	G	T	219301338	3	4	93	1	0	0	0	0	1	0	0	0	17223	1377	48	3	2018	3	VIL1	2	219301338	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	15710319	219301338	23898035	9	6391											
COL4A4	1286	mdanderson.org	37	chr2	227983443	227983443	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgtggccactcataccaGgtttgcctctgggtccagga	11	12	2	0	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_000092	exon7	c.C407A	p.P136H	ATACCAGGTTTGC		21	2	0.1	26	0	0				1	0	0				T	227983443	G	T	227983443	3	4	93	1	0	0	0	0	1	0	0	0	3716	1000	35	3	4833	3	COL4A4	2	227983443	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	8682105	227983443	15215930	10	6392											
CCR9	10803	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	45942703	45942703	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgatcatgtgcatcagCgtggacaggtacattgccat	11	9	2	1	rs201764174		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	CCR9	NM_031200	exon3	c.C423T	p.S141S	CATCAGCGTGGAC		121	19	0.16	68	1	0.0147058824		45		0	0					T	45942703	C	T	45942703	2	4	93	1	0	0	0	0	0	0	0	1	2970	767	27	1		1	CCR9	3	45942703	Silent	SNP	C	TCGA-SN-A84X-01A-11D-A435-10		45942703	152079727	11	6393											
HEG1	57493	mdanderson.org	37	chr3	124716650	124716650	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcacattcgggactcttccGcttgcacaagctgcccgctg	10	15	2	0	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_020733	exon12	c.C3535A	p.R1179R	TCTTCCGCTTGCA		34	4	0.12	46	0	0				1	0	0				T	124716650	G	T	124716650	2	4	93	1	0	0	0	0	0	0	0	1	7084	1086	38	1		1	HEG1	3	124716650	Silent	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	78773947	124716650	73305780	12	6394											
PIK3CB	5291	mdanderson.org	37	chr3	138374260	138374260	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagtctttccgaactgtgtGggccatccagttcactttag	10	10	2	0	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_006219	exon22	c.C3184A	p.H1062N	CTGTGTGGGCCAT		116	5	0.04	123	0	0				24	0	0				T	138374260	G	T	138374260	3	4	93	1	0	0	0	0	1	0	0	0	11961	1348	47	3	30	3	PIK3CB	3	138374260	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	13657610	138374260	59648170	13	6395											
PDS5A	23244	broad.mit.edu;mdanderson.org	37	chr4	39864513	39864513	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agccataggattctgcttaaTgtattccctgcgtatactga	8	9	1	1	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	PDS5A	NM_001100399	exon25	c.A2947G	p.I983V	GCTTAATGTATTC		53	4	0.08	50	0	0		114		6	0	0				C	39864513	T	C	39864513	3	2	93	1	0	0	0	0	1	0	0	0	11737	1464	51	4	1102	4	PDS5A	4	39864513	Missense_Mutation	SNP	T	TCGA-SN-A84X-01A-11D-A435-10		39864513	151289763	14	6396											
ADAMTS3	9508	mdanderson.org	37	chr4	73161498	73161498	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatccatatttagtgtactGgaaacctggaaaaggaaata	9	6	0	0	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_014243	exon19	c.C2596A	p.Q866K	TGTACTGGAAACC		52	3	0.06	57	0	0				0	0					T	73161498	G	T	73161498	3	4	93	1	0	0	0	0	1	0	0	0	266	1357	47	3	1037	3	ADAMTS3	4	73161498	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	33296985	73161498	117992778	15	6397											
CLPTM1L	81037	mdanderson.org	37	chr5	1331993	1331993	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaaaggccaggaaatcaaaGagaagctagagagaacacac	10	7	1	3	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_030782	exon8	c.C897A	p.L299L	ATCAAAGAGAAGC		24	3	0.13	29	0	0				179	0	0				T	1331993	G	T	1331993	2	4	93	1	0	0	0	0	0	0	0	1	3578	929	33	3		3	CLPTM1L	5	1331993	Silent	SNP	G	TCGA-SN-A84X-01A-11D-A435-10		1331993	179583267	16	6398											
MAP1B	4131	mdanderson.org	37	chr5	71495134	71495134	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaggtctagaaggcttctGgatgacatcagcaatggcta	13	7	3	3	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_005909	exon5	c.G5952T	p.L1984L	GCTTCTGGATGAC		29	3	0.1	28	0	0				0	0					T	71495134	G	T	71495134	2	4	93	1	0	0	0	0	0	0	0	1	9277	1335	47	3		3	MAP1B	5	71495134	Silent	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	70163141	71495134	109420126	17	6399											
SERINC5	256987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	79465352	79465352	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcgtaccacagcttgttaCtggctgtgcctgctgtcctg	12	12	0	0	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001174071	exon6	c.G569A	p.S190N	TTGTTACTGGCTG		68	24	0.35	83	0	0				7	5	0.71				T	79465352	C	T	79465352	3	4	93	1	0	0	0	0	1	0	0	0	14136	565	20	3	882	3	SERINC5	5	79465352	Missense_Mutation	SNP	C	TCGA-SN-A84X-01A-11D-A435-10	7970218	79465352	101449908	18	6400											
ANKRD34B	340120	mdanderson.org	37	chr5	79855372	79855372	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tagtatgcttcccacagggcAactttgctgttgtgatgatg	11	8	0	2	rs32857	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001004441	exon5	c.T467A	p.L156X	CAGGGCAACTTTG		111	5	0.05	92	0	0				0	0					T	79855372	A	T	79855372	4	4	93	1	0	0	0	0	0	1	0	0	658	131	5	5	1081	5	ANKRD34B	5	79855372	Nonsense_Mutation	SNP	A	TCGA-SN-A84X-01A-11D-A435-10	390020	79855372	101059888	19	6401											
ACSL6	23305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	131310650	131310650	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagcacatcgtcctgtctcGgaaagatcactttctgcagg	10	11	3	2	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001009185	exon11	c.C1004T	p.P335L	TGTCTCGGAAAGA		192	60	0.31	230	0	0				1	0	0				A	131310650	G	A	131310650	3	1	93	1	0	0	0	0	1	0	0	0	181	1116	39	1	1290	1	ACSL6	5	131310650	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	51455278	131310650	49604610	20	6402											
PCDHB14	56122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140604522	140604522	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cacagacagagactcaggcaCcaacgcccaggtcaactact	8	15	2	2	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_018934	exon1	c.C1445A	p.T482N	CAGGCACCAACGC		54	11	0.2	29	0	0				7	5	0.71				A	140604522	C	A	140604522	3	1	93	1	0	0	0	0	1	0	0	0	11585	507	18	3	1447	3	PCDHB14	5	140604522	Missense_Mutation	SNP	C	TCGA-SN-A84X-01A-11D-A435-10	9293872	140604522	40310738	21	6403											
TAF7	6879	mdanderson.org	37	chr5	140699046	140699046	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgattttctgcctcctttGtttcatcttcggcaattatt	5	10	3	1	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_005642	exon1	c.C566A	p.T189K	TCCTTTGTTTCAT		61	4	0.07	76	0	0				310	0	0				T	140699046	G	T	140699046	3	4	93	1	0	0	0	0	1	0	0	0	15588	1377	48	3	487	3	TAF7	5	140699046	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	94524	140699046	40216214	22	6404											
MAPK9	5601	mdanderson.org	37	chr5	179663447	179663447	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtctgtgtctgaggccagCgtctgctcagtggacatgga	14	10	4	1	rs114045781	bycluster;byfrequency;by1000genomes	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_139070	exon12	c.G1212A	p.T404T	GGCCAGCGTCTGC		46	3	0.07	54	0	0	0.001			55	1	0.02				T	179663447	C	T	179663447	2	4	93	1	0	0	0	0	0	0	0	1	9336	755	27	1		1	MAPK9	5	179663447	Silent	SNP	C	TCGA-SN-A84X-01A-11D-A435-10	38964401	179663447	1251813	23	6405											
PBX2	5089	mdanderson.org	37	chr6	32157666	32157666	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccggcccccgcctggaggGggcggccccagtagccgttc	15	19	0	0	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_002586	exon1	c.C27T	p.P9P	TGGAGGGGGCGGC		60	5	0.08	39	1	0.0256410256				2	0	0				A	32157666	G	A	32157666	2	1	93	1	0	0	0	0	0	0	0	1	11539	1219	43	3		3	PBX2	6	32157666	Silent	SNP	G	TCGA-SN-A84X-01A-11D-A435-10		32157666	138957401	24	6406											
KLC4	89953	bcgsc.ca;mdanderson.org	37	chr6	43041047	43041047	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgaactcttggtgaggaaGctccaggggactgagcctcg	15	9	1	3	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	KLC4	NM_201523	exon14	c.G1770T	p.K590N	GAGGAAGCTCCAG		58	5	0.09	66	0	0		89		88	0	0				T	43041047	G	T	43041047	3	4	93	1	0	0	0	0	1	0	0	0	8378	962	34	2	1893	2	KLC4	6	43041047	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	10883381	43041047	128074020	25	6407											
C6orf58	352999	mdanderson.org	37	chr6	127898393	127898393	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttctgcttccttagcaggGacttccaatctctcagagac	7	12	3	1	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001010905	exon1	c.G63T	p.G21G	AGCAGGGACTTCC		47	4	0.09	50	0	0				0	0					T	127898393	G	T	127898393	2	4	93	1	0	0	0	0	0	0	0	1	2382	1161	41	3		3	C6orf58	6	127898393	Silent	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	84857346	127898393	43216674	26	6408											
LPA	4018	hgsc.bcm.edu	37	chr6	160978593	160978593	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	tggattcctgcagtagttctCggtcaggccactgcaaattc	10	11	2	0	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_005577	exon30	c.G4642T	p.E1548X	AGTTCTCGGTCAG		89	4	0.04	73	0	0				1	0	0				A	160978593	C	A	160978593	4	1	93	1	0	0	0	0	0	1	0	0	8947	893	31	1	1524	1	LPA	6	160978593	Nonsense_Mutation	SNP	C	TCGA-SN-A84X-01A-11D-A435-10	33080200	160978593	10136474	27	6409											
SP8	221833	broad.mit.edu;mdanderson.org	37	chr7	20824970	20824970	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgcccccgccgccgccgcCgctgcccccggaaactccgg	12	24	0	0	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	SP8	NM_182700	exon2	c.G466A	p.G156S	CGCCGCCGCTGCC		36	3	0.08	46	0	0		43		0	0					T	20824970	C	T	20824970	3	4	93	1	0	0	0	0	1	0	0	0	15023	652	23	1	1064	1	SP8	7	20824970	Missense_Mutation	SNP	C	TCGA-SN-A84X-01A-11D-A435-10		20824970	138313693	28	6410											
GTF2IRD1	9569	mdanderson.org	37	chr7	73938405	73938405	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgtgttttgatagagaaGtgggacgccttcataaagga	12	6	1	2	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001199207	exon8	c.G1107T	p.K369N	AGAGAAGTGGGAC		40	3	0.08	47	0	0				41	0	0				T	73938405	G	T	73938405	3	4	93	1	0	0	0	0	1	0	0	0	6908	1020	36	3	1037	3	GTF2IRD1	7	73938405	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	53113435	73938405	85200258	29	6411											
FAM200A	221786	mdanderson.org	37	chr7	99144733	99144733	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggaaagtaataattaaaaGtttgagacaaagaagtgaga	10	3	0	3	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_145111	exon2	c.C1298A	p.T433N	TTAAAAGTTTGAG		27	3	0.11	43	0	0				16	0	0				T	99144733	G	T	99144733	3	4	93	1	0	0	0	0	1	0	0	0	5567	1029	36	3	427	3	FAM200A	7	99144733	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	25206328	99144733	59993930	30	6412											
MLL5	55904	mdanderson.org	37	chr7	104746451	104746451	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacagctgttcccttccagGtagaatttttttttcagagt	8	8	1	3	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_018682	exon18	c.2596+1G>T	.	TTCCAGGTAGAAT		81	4	0.05	99	0	0				2	0	0				T	104746451	G	T	104746451	5	4	93	1	0	0	0	0	0	0	1	0	9671	1275	44	3	2663	3	MLL5	7	104746451	Splice_Site	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	5601718	104746451	54392212	31	6413											
FAM86B1	85002	broad.mit.edu	37	chr8	12042851	12042851	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctgcagggacagctcgggCaccatgtaggcccgggtggg	17	12	0	0	rs200915866	byfrequency	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	FAM86B1	.	.	.	.	CTCGGGCACCATG		13	5	0.38	9	0	0		7		3	0	0				G	12042851	C	G	12042851	3	3	93	1	0	0	0	0	1	0	0	0	5675	725	25	5		5	FAM86B1	8	12042851	Missense_Mutation	SNP	C	TCGA-SN-A84X-01A-11D-A435-10		12042851	134321171	32	6414											
ADAM9	8754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	38871495	38871495	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcttccagagaccttttgcCtgaagattttgtggtttata	8	8	1	3	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_003816	exon4	c.C266G	p.P89R	TTTTGCCTGAAGA		90	15	0.17	60	0	0				8	1	0.13				G	38871495	C	G	38871495	3	3	93	1	0	0	0	0	1	0	0	0	252	681	24	5	280	5	ADAM9	8	38871495	Missense_Mutation	SNP	C	TCGA-SN-A84X-01A-11D-A435-10	26828644	38871495	107492527	33	6415											
NSMAF	8439	mdanderson.org	37	chr8	59571855	59571855	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cgccgggacctgcactgccgGatagctcggcatgcctcggc	14	16	0	0	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	NSMAF_ENST00000427130,NS,carcinoma,-1,2	NSMAF_ENST00000427130	NM_001144772	exon1	c.C51A	p.I17I	CTGCCGGATAGCT		32	3	0.09	12	0	0		-1	2	2	0	0				T	59571855	G	T	59571855	2	4	93	1	0	0	0	0	0	0	0	1	10721	1164	41	3		3	NSMAF	8	59571855	Silent	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	20700360	59571855	86792167	34	6416											
INSL6	11172	mdanderson.org	37	chr9	5185598	5185598	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggacaagcggaggagccgcGgcatccctgtgaccccaggc	16	14	0	1	rs142813719	bycluster;byfrequency;alternate_allele	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	INSL6,NS,carcinoma,+1,1	INSL6	NM_007179	exon1	c.C5A	p.P2Q	AGCCGCGGCATCC		46	3	0.07	38	1	0.0263157895		1	1	0	0					T	5185598	G	T	5185598	3	4	93	1	0	0	0	0	1	0	0	0	7813	1116	39	1	644	1	INSL6	9	5185598	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10		5185598	136027833	35	6417											
NFX1	4799	bcgsc.ca;mdanderson.org	37	chr9	33307243	33307243	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaattccacatagctgtgGtgaggtttgtagaaagaaac	11	5	0	4	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	NFX1	NM_147134	exon5	c.G1322T	p.G441V	GCTGTGGTGAGGT		89	5	0.06	75	0	0		85		10	0	0				T	33307243	G	T	33307243	3	4	93	1	0	0	0	0	1	0	0	0	10433	1261	44	3	1340	3	NFX1	9	33307243	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	28121645	33307243	107906188	36	6418											
GAS1	2619	mdanderson.org	37	chr9	89561083	89561083	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatgtcctcaatgacggtGcggcattcgtccgtgcagcg	13	12	1	1	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_002048	exon1	c.C612A	p.R204R	GACGGTGCGGCAT		30	3	0.1	30	0	0				11	0	0				T	89561083	G	T	89561083	2	4	93	1	0	0	0	0	0	0	0	1	6283	1306	46	2		2	GAS1	9	89561083	Silent	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	56253840	89561083	51652348	37	6419											
SARDH	1757	ucsc.edu;bcgsc.ca	37	chr9	136594903	136594903	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacctgaatcccctcgatgCgctcggtgacgacataggca	10	14	0	2	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	SARDH,NS,carcinoma,-1,1	SARDH	NM_007101	exon6	c.G899A	p.R300H	TCGATGCGCTCGG		20	4	0.2	29	0	0		112	1	4	0	0				T	136594903	C	T	136594903	3	4	93	1	0	0	0	0	1	0	0	0	13893	768	27	1	1921	1	SARDH	9	136594903	Missense_Mutation	SNP	C	TCGA-SN-A84X-01A-11D-A435-10	47033820	136594903	4618528	38	6420											
RBM17	84991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	6157491	6157491	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacaatttggacaaattcaGggtcttggatttggcagaac	10	7	2	1	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	RBM17,NS,carcinoma,0,1	RBM17	NM_001145547	exon12	c.G1178A	p.R393K	AATTCAGGGTCTT		50	10	0.2	45	0	0		0	1	384	189	0.49				A	6157491	G	A	6157491	3	1	93	1	0	0	0	0	1	0	0	0	13170	1000	35	3	1220	3	RBM17	10	6157491	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10		6157491	129377256	39	6421											
DCLRE1C	64421	mdanderson.org	37	chr10	14951005	14951005	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgatttcatcatttcttTtaaagaatacttcccactgg	5	9	3	2	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001033855	exon14	c.A1481G	p.K494R	TTTCTTTTAAAGA		50	3	0.06	53	0	0				5	0	0				C	14951005	T	C	14951005	3	2	93	1	0	0	0	0	1	0	0	0	4319	1841	64	4	601	4	DCLRE1C	10	14951005	Missense_Mutation	SNP	T	TCGA-SN-A84X-01A-11D-A435-10	8793514	14951005	120583742	40	6422											
DEAF1	10522	mdanderson.org	37	chr11	674705	674705	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccgcggctctgacagctccAgcccattgaccaacgcggga	11	16	1	2	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_021008	exon10	c.T1334C	p.L445P	AGCTCCAGCCCAT		38	3	0.08	56	0	0				164	0	0				G	674705	A	G	674705	3	3	93	1	0	0	0	0	1	0	0	0	4403	188	7	4	375	4	DEAF1	11	674705	Missense_Mutation	SNP	A	TCGA-SN-A84X-01A-11D-A435-10		674705	134331811	41	6423											
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	1261503	1261503	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgcttgatcgccatctgcGgaagcaacggcaccatcatc	9	15	2	1	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	MUC5B,NS,carcinoma,0,2	MUC5B	NM_002458	exon30	c.G3868A	p.G1290R	ATCTGCGGAAGCA		66	18	0.27	59	0	0		0	2	0	0					A	1261503	G	A	1261503	3	1	93	1	0	0	0	0	1	0	0	0	10026	1117	39	1	3995	1	MUC5B	11	1261503	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	586798	1261503	133745013	42	6424											
AMBRA1	55626	mdanderson.org	37	chr11	46563785	46563785	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccaagaggaactagcctcGccagaggagtagttaggtgt	14	8	0	2	rs375558035	alternate_allele	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_017749	exon8	c.C1512A	p.G504G	AGCCTCGCCAGAG		36	3	0.08	47	0	0				6	0	0				T	46563785	G	T	46563785	2	4	93	1	0	0	0	0	0	0	0	1	561	1074	38	1		1	AMBRA1	11	46563785	Silent	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	45302282	46563785	88442731	43	6425											
TCN1	6947	mdanderson.org	37	chr11	59633919	59633919	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacagtaagagccccactaGgggcagctggtgtgactgtc	13	10	0	2	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001062	exon1	c.C25A	p.L9I	CCACTAGGGGCAG		47	3	0.06	52	0	0				26	0	0				T	59633919	G	T	59633919	3	4	93	1	0	0	0	0	1	0	0	0	15765	991	35	3	1312	3	TCN1	11	59633919	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	13070134	59633919	75372597	44	6426											
ASRGL1	80150	mdanderson.org	37	chr11	62156700	62156700	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgttaataaaatggtcggccGcgttggggactcaccgtgtc	13	10	1	0	rs144391767	alternate_allele	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001083926	exon5	c.G587T	p.R196L	TCGGCCGCGTTGG		33	3	0.09	23	0	0				51	0	0				T	62156700	G	T	62156700	3	4	93	1	0	0	0	0	1	0	0	0	1059	1087	38	1	601	1	ASRGL1	11	62156700	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	2522781	62156700	72849816	45	6427											
TSGA10IP	254187	broad.mit.edu	37	chr11	65715748	65715751	+	RNA	DEL	CATC	CATC	-													cattcaccaaacttttggatCatccatccatccatccatcc					rs372880030		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	CATC	CATC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	TSGA10IP	.	.	.	.	TTGGATCATCCAT		6	2	0.33	16	0	0		31		0	0					-	65715751	CATC	-	65715748	6	5	93	0	1	1	0	1	0	0	0	0	16678	841	29	0		0	TSGA10IP	11	65715748	RNA	DEL	CATC	TCGA-SN-A84X-01A-11D-A435-10	3559048	65715748	69290768	46	6428											
LRP5	4041	mdanderson.org	37	chr11	68115709	68115709	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcgccttggaccccgctcaCgggtaaaccctgctgcgact	10	16	1	0	rs191882942	bycluster;by1000genomes	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_002335	exon2	c.C486T	p.H162H	CGCTCACGGGTAA		11	2	0.18	16	0	0	0.001			16	0	0				T	68115709	C	T	68115709	2	4	93	1	0	0	0	0	0	0	0	1	9004	535	19	1		1	LRP5	11	68115709	Silent	SNP	C	TCGA-SN-A84X-01A-11D-A435-10	2399961	68115709	66890807	47	6429											
NACA	4666	broad.mit.edu	37	chr12	57112396	57112396	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtagctggacctccttttGgggagggaggagttgcagct	17	7	0	0	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	NACA	.	.	.	.	CCTTTTGGGGAGG		57	7	0.12	34	0	0		131		0	0					A	57112396	G	A	57112396	3	1	93	1	0	0	0	0	1	0	0	0	10180	1348	47	3	3346	3	NACA	12	57112396	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10		57112396	76739499	48	6430											
TMCC3	57458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	94976045	94976045	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gctgatttctgattcttcttCtcaaagacttgcttgatacg	7	9	4	4	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_020698	exon2	c.G348A	p.E116E	CTTCTTCTCAAAG		114	21	0.18	67	0	0				2	0	0				T	94976045	C	T	94976045	2	4	93	1	0	0	0	0	0	0	0	1	16053	912	32	3		3	TMCC3	12	94976045	Silent	SNP	C	TCGA-SN-A84X-01A-11D-A435-10	37863649	94976045	38875850	49	6431											
SLC5A8	160728	mdanderson.org	37	chr12	101603481	101603481	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcactgcggtcattctgcggCcgcccatcaggaagtccttg	12	14	3	0	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_145913	exon1	c.G146A	p.G49D	CTGCGGCCGCCCA		33	3	0.09	39	0	0				0	0					T	101603481	C	T	101603481	3	4	93	1	0	0	0	0	1	0	0	0	14725	739	26	2	1746	2	SLC5A8	12	101603481	Missense_Mutation	SNP	C	TCGA-SN-A84X-01A-11D-A435-10	6627436	101603481	32248414	50	6432											
ATP12A	479	mdanderson.org	37	chr13	25283966	25283966	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagctatgggcaggaatgGgtgagtggcgggagccctgc	19	8	0	1	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001185085	exon19	c.G2781T	p.W927C	GGAATGGGTGAGT		38	3	0.08	31	0	0				286	0	0				T	25283966	G	T	25283966	3	4	93	1	0	0	0	0	1	0	0	0	1121	1246	43	3	2855	3	ATP12A	13	25283966	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10		25283966	89885912	51	6433											
ZBTB1	22890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	64989758	64989758	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaatgctggatgattttagGgacaatcattaccagataaa	9	5	1	2	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_014950	exon2	c.G1536A	p.R512R	TTTTAGGGACAAT		68	25	0.37	67	0	0				21	8	0.38				A	64989758	G	A	64989758	2	1	93	1	0	0	0	0	0	0	0	1	17580	1223	43	3		3	ZBTB1	14	64989758	Silent	SNP	G	TCGA-SN-A84X-01A-11D-A435-10		64989758	42359782	52	6434											
GPR68	0	broad.mit.edu	37	chr14	91701361	91701363	+	In_Frame_Del	DEL	TCA	TCA	-													ggtatggtcgatggtacagcTcatcgaggagttgtctgcag					novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	TCA	TCA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	GPR68	NM_001177676	exon2	c.32_34del	p.11_12del	TACAGCTCATCGA		100	9	0.09	75	0	0		32		9	0	0				-	91701363	TCA	-	91701361	7	5	93	1	0	1	0	1	0	0	0	0	6746	1551	54	0	1067	0	GPR68	14	91701361	In_Frame_Del	DEL	TCA	TCGA-SN-A84X-01A-11D-A435-10	26711603	91701361	15648179	53	6435											
RYR3	6263	mdanderson.org	37	chr15	34145883	34145883	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcggcttctctggtgtcatGgtacaaaaagcttaggagtt	12	7	2	0	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	RYR3,NS,carcinoma,+1,1	RYR3	NM_001036	exon96	c.G13799T	p.W4600L	TGTCATGGTACAA		48	3	0.06	48	0	0		1	1	0	0					T	34145883	G	T	34145883	3	4	93	1	0	0	0	0	1	0	0	0	13821	1362	47	3	14181	3	RYR3	15	34145883	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10		34145883	68385509	54	6436											
CASC5	57082	mdanderson.org	37	chr15	40911197	40911197	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcccattcatacccagatGcaacagaaggaggtatgagt	10	10	1	3	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_170589	exon10	c.G441T	p.M147I	CCAGATGCAACAG		32	3	0.09	44	0	0				0	0					T	40911197	G	T	40911197	3	4	93	1	0	0	0	0	1	0	0	0	2681	1319	46	2	475	2	CASC5	15	40911197	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	6765314	40911197	61620195	55	6437											
HEXA	3073	mdanderson.org	37	chr15	72643501	72643501	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgagctctggaaaagtgaaGctctcatatgggaaggaagg	14	5	2	2	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_000520	exon6	c.C645A	p.S215R	AGTGAAGCTCTCA		45	3	0.07	59	0	0				108	0	0				T	72643501	G	T	72643501	3	4	93	1	0	0	0	0	1	0	0	0	7113	962	34	2	980	2	HEXA	15	72643501	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	31732304	72643501	29887891	56	6438											
PML	5371	mdanderson.org	37	chr15	74315527	74315527	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcggctgggccgcctggatGctgtgctgcagcgcatccgc	16	14	0	0	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_033249	exon3	c.G961T	p.A321S	CTGGATGCTGTGC		20	2	0.1	26	0	0				21	0	0				T	74315527	G	T	74315527	3	4	93	1	0	0	0	0	1	0	0	0	12182	1319	46	2	971	2	PML	15	74315527	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	1672026	74315527	28215865	57	6439											
SYNM	23336	hgsc.bcm.edu;mdanderson.org	37	chr15	99666940	99666940	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttacagggccttattggaaGgagaaagtaatccagagata	11	5	0	2	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	.	.	.	.	TTGGAAGGAGAAA		68	5	0.07	85	0	0				0	0					T	99666940	G	T	99666940	4	4	93	1	0	0	0	0	0	1	0	0	15511	1001	35	3	958	3	SYNM	15	99666940	Nonsense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	25351413	99666940	2864452	58	6440											
WDR24	84219	mdanderson.org	37	chr16	735454	735454	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaggaggagtccacgggggCcagggaggccacatccgcct	17	12	0	0	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_032259	exon7	c.G1822A	p.A608T	CGGGGGCCAGGGA		41	3	0.07	55	0	0				52	0	0				T	735454	C	T	735454	3	4	93	1	0	0	0	0	1	0	0	0	17340	739	26	2	562	2	WDR24	16	735454	Missense_Mutation	SNP	C	TCGA-SN-A84X-01A-11D-A435-10		735454	89619299	59	6441											
ARHGAP17	55114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	24965936	24965936	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccctcacctcctccttcatGcctgtctccagaagcagcat	5	19	3	1	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001006634	exon10	c.C840T	p.G280G	CTTCATGCCTGTC		32	12	0.38	38	0	0				14	0	0				A	24965936	G	A	24965936	2	1	93	1	0	0	0	0	0	0	0	1	864	1306	46	2		2	ARHGAP17	16	24965936	Silent	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	24230482	24965936	65388817	60	6442											
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	31371099	31371099	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcccgcaactttgccacgaTgatgaacttcgtgagagctg	10	12	0	3	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_000887	exon6	c.T509A	p.M170K	CCACGATGATGAA		65	18	0.28	67	0	0				0	0					A	31371099	T	A	31371099	3	1	93	1	0	0	0	0	1	0	0	0	7932	1464	51	5	531	5	ITGAX	16	31371099	Missense_Mutation	SNP	T	TCGA-SN-A84X-01A-11D-A435-10	6405163	31371099	58983654	61	6443											
EDC4	23644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	67911669	67911669	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtgggacctggacatgcTccgctccagccacagtacct	12	14	0	0	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_014329	exon7	c.T815C	p.L272P	ACATGCTCCGCTC		163	33	0.2	110	0	0				12	4	0.33				C	67911669	T	C	67911669	3	2	93	1	0	0	0	0	1	0	0	0	4934	1551	54	4	841	4	EDC4	16	67911669	Missense_Mutation	SNP	T	TCGA-SN-A84X-01A-11D-A435-10	36540570	67911669	22443084	62	6444											
VPS4A	27183	mdanderson.org	37	chr16	69352745	69352745	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgccgtcgtgatggagaaGcccaacatacggtggaacga	15	9	0	2	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_013245	exon5	c.G363T	p.K121N	GGAGAAGCCCAAC		38	3	0.08	32	0	0				149	0	0				T	69352745	G	T	69352745	3	4	93	1	0	0	0	0	1	0	0	0	17271	962	34	2	381	2	VPS4A	16	69352745	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	1441076	69352745	21002008	63	6445											
COG8	84342	mdanderson.org	37	chr16	69369198	69369198	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	atgttggtcctcagttgctgGatcagctggctcagcatcag	12	10	4	0	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_032382	exon3	c.C639A	p.I213I	TTGCTGGATCAGC		17	2	0.12	19	0	0				32	0	0				T	69369198	G	T	69369198	2	4	93	1	0	0	0	0	0	0	0	1	3687	1164	41	3		3	COG8	16	69369198	Silent	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	16453	69369198	20985555	64	6446											
DHODH	1723	mdanderson.org	37	chr16	72057134	72057134	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcctccagggtgccctgcGctctgaaacaggagggctga	16	12	1	2	rs200181357	bycluster;alternate_allele	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	DHODH,NS,carcinoma,+1,1	DHODH	NM_001361	exon7	c.G890T	p.R297L	CCCTGCGCTCTGA		35	3	0.09	82	0	0		1	1	21	0	0				T	72057134	G	T	72057134	3	4	93	1	0	0	0	0	1	0	0	0	4512	1087	38	1	916	1	DHODH	16	72057134	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	2687936	72057134	18297619	65	6447											
DNAH2	146754	mdanderson.org	37	chr17	7689596	7689596	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggcaagactgcctcatggcGcattctacaggcctccctgt	10	15	2	1	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_020877	exon39	c.G6284A	p.R2095H	CATGGCGCATTCT		43	3	0.07	47	0	0				0	0					A	7689596	G	A	7689596	3	1	93	1	0	0	0	0	1	0	0	0	4630	1087	38	1	6438	1	DNAH2	17	7689596	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10		7689596	73505614	66	6448											
ITGA2B	3674	broad.mit.edu	37	chr17	42460925	42460925	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gagccgaatcgcccatagagCtgtgtgccagtcagcaggag	14	11	1	1	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	ITGA2B	NM_000419	exon12	c.G1146T	p.Q382H	ATAGAGCTGTGTG		62	6	0.1	52	1	0.0192307692		88		6	0	0				A	42460925	C	A	42460925	3	1	93	1	0	0	0	0	1	0	0	0	7919	796	28	2	2049	2	ITGA2B	17	42460925	Missense_Mutation	SNP	C	TCGA-SN-A84X-01A-11D-A435-10	34771329	42460925	38734285	67	6449											
NFE2L1	4779	bcgsc.ca;mdanderson.org	37	chr17	46136684	46136684	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggggcaagaacaagatggCggcgcagaactgccgcaagc	15	12	0	3	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	NFE2L1	NM_003204	exon6	c.C2000T	p.A667V	AGATGGCGGCGCA		74	5	0.07	76	0	0		60		398	0	0				T	46136684	C	T	46136684	3	4	93	1	0	0	0	0	1	0	0	0	10413	768	27	1	2018	1	NFE2L1	17	46136684	Missense_Mutation	SNP	C	TCGA-SN-A84X-01A-11D-A435-10	3675759	46136684	35058526	68	6450											
GIP	2695	broad.mit.edu	37	chr17	47039146	47039146	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgactggccagctccagcGcccgagcctccctctgggtg	12	17	1	1	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	GIP	NM_004123	exon4	c.C293A	p.A98E	TCCAGCGCCCGAG		60	4	0.07	49	0	0		15		434	0	0				T	47039146	G	T	47039146	3	4	93	1	0	0	0	0	1	0	0	0	6432	1087	38	1	180	1	GIP	17	47039146	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	902462	47039146	34156064	69	6451											
TANC2	26115	mdanderson.org	37	chr17	61489048	61489048	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctatggcgatgctgaggtgGtaagtacctttaaacaagcc	11	8	1	1	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_025185	exon20	c.3543+1G>T	.	GAGGTGGTAAGTA		48	3	0.06	36	0	0				0	0					T	61489048	G	T	61489048	5	4	93	1	0	0	0	0	0	0	1	0	15601	1275	44	3	3622	3	TANC2	17	61489048	Splice_Site	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	14449902	61489048	19706162	70	6452											
ARSG	22901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	66339927	66339927	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgggttacgtcactgggaTaataggtaactctgggcccc	14	10	2	0	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001267727	exon3	c.T401G	p.I134R	CTGGGATAATAGG		89	18	0.2	57	0	0				3	0	0				G	66339927	T	G	66339927	3	3	93	1	0	0	0	0	1	0	0	0	991	1406	49	4	407	4	ARSG	17	66339927	Missense_Mutation	SNP	T	TCGA-SN-A84X-01A-11D-A435-10	4850879	66339927	14855283	71	6453											
UNC13D	201294	mdanderson.org	37	chr17	73840402	73840402	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gagggcgctgctgcggatggGagaggagtgtcgccatggtg	21	7	0	1	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_199242	exon1	c.C17A	p.S6Y	GGATGGGAGAGGA		41	3	0.07	58	0	0				5	0	0				T	73840402	G	T	73840402	3	4	93	1	0	0	0	0	1	0	0	0	17046	1174	41	3	3383	3	UNC13D	17	73840402	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	7500475	73840402	7354808	72	6454											
SMARCA4	6597	hgsc.bcm.edu	37	chr19	11144829	11144829	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgcccgacgacgagaccGtcaaccagatgatcgcccgg	13	14	1	3	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_003072	exon28	c.G3904T	p.V1302F	GAGACCGTCAACC		84	4	0.05	79	0	0				487	0	0				T	11144829	G	T	11144829	3	4	93	1	0	0	0	0	1	0	0	0	14823	1145	40	1	4010	1	SMARCA4	19	11144829	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10		11144829	47984154	73	6455											
ILVBL	10994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	15233609	15233609	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	caacgggcagctccacaaacAccggacctgcagggacaggg	13	14	0	0	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_006844	exon6	c.T611G	p.V204G	ACAAACACCGGAC		87	26	0.3	86	0	0				121	42	0.35				C	15233609	A	C	15233609	3	2	93	1	0	0	0	0	1	0	0	0	7758	159	6	4	1331	4	ILVBL	19	15233609	Missense_Mutation	SNP	A	TCGA-SN-A84X-01A-11D-A435-10	4088780	15233609	43895374	74	6456											
ANO8	57719	mdanderson.org	37	chr19	17439209	17439209	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgccgggagccccctccGcctcgtcgtcctcctcggcc	12	21	0	0	rs202118586		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_020959	exon13	c.C1988A	p.A663E	CCCTCCGCCTCGT		23	2	0.09	25	0	0				6	0	0				T	17439209	G	T	17439209	3	4	93	1	0	0	0	0	1	0	0	0	697	1087	38	1	1734	1	ANO8	19	17439209	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10	2205600	17439209	41689774	75	6457											
MEGF8	1954	mdanderson.org	37	chr19	42872801	42872801	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcatggagggtggactcagCggcccccgtgatggtgagag	18	9	1	2	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001271938	exon36	c.C6468T	p.S2156S	ACTCAGCGGCCCC		38	3	0.08	28	0	0				0	0					T	42872801	C	T	42872801	2	4	93	1	0	0	0	0	0	0	0	1	9512	767	27	1		1	MEGF8	19	42872801	Silent	SNP	C	TCGA-SN-A84X-01A-11D-A435-10	25433592	42872801	16256182	76	6458											
C20orf27	54976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	3739195	3739195	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcatgtaccttgaccagaaaGctgctgtcactctcctgggt	10	12	2	2	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001039140	exon3	c.C225G	p.S75R	CAGAAAGCTGCTG		61	15	0.25	35	0	0				180	59	0.33				C	3739195	G	C	3739195	3	2	93	1	0	0	0	0	1	0	0	0	2121	962	34	5	390	5	C20orf27	20	3739195	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10		3739195	59286325	77	6459											
GDF5	8200	broad.mit.edu	37	chr20	34025551	34025551	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctgaagacgttccgggccAgggggggcctctccttggcc	16	14	1	2	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	GDF5	NM_000557	exon1	c.T158C	p.L53P	CGGGCCAGGGGGG		36	8	0.22	42	7	0.1666666667		66		0	0					G	34025551	A	G	34025551	3	3	93	1	0	0	0	0	1	0	0	0	6357	188	7	4	1355	4	GDF5	20	34025551	Missense_Mutation	SNP	A	TCGA-SN-A84X-01A-11D-A435-10	30286356	34025551	28999969	78	6460											
KRTAP10-4	386672	ucsc.edu	37	chr21	45993851	45993851	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgctgcccagtgacctgCgagcccagcccctgccaatc	9	20	0	1	rs543299		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	KRTAP10-4	NM_198687	exon1	c.C216T	p.C72C	GACCTGCGAGCCC		35	12	0.34	18	7	0.3888888889		44		0	0					T	45993851	C	T	45993851	2	4	93	1	0	0	0	0	0	0	0	1	8553	776	27	1		1	KRTAP10-4	21	45993851	Silent	SNP	C	TCGA-SN-A84X-01A-11D-A435-10		45993851	2136044	79	6461											
ZNF41	7592	mdanderson.org	37	chrX	47308136	47308136	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccggtatgaattttttgatGtgtaatgaggtttgatttga	11	3	0	5	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_007130	exon5	c.C1033A	p.H345N	TTTGATGTGTAAT		42	3	0.07	20	0	0				1	0	0				T	47308136	G	T	47308136	3	4	93	1	0	0	0	0	1	0	0	0	17945	1377	48	3	1310	3	ZNF41	23	47308136	Missense_Mutation	SNP	G	TCGA-SN-A84X-01A-11D-A435-10		47308136	107962424	80	6462											
HCFC1	3054	mdanderson.org	37	chrX	153217373	153217373	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggcaattgctctcaatggCtgggtcgttgagactgtcgg	15	8	1	1	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_005334	exon20	c.G5179A	p.A1727T	CAATGGCTGGGTC		39	3	0.08	28	0	0				41	0	0				T	153217373	C	T	153217373	3	4	93	1	0	0	0	0	1	0	0	0	7031	797	28	2	956	2	HCFC1	23	153217373	Missense_Mutation	SNP	C	TCGA-SN-A84X-01A-11D-A435-10	105909237	153217373	2053187	81	6463											
SPEN	23013	mdanderson.org	37	chr1	16265332	16265332	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctgcaggccaagcaggcGgcagggatcatcaacgttcc	12	13	2	0	rs138107503	alternate_allele	TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_015001	exon14	c.G10824T	p.A3608A	GCAGGCGGCAGGG		36	3	0.08	73	0	0				56	0	0				T	16265332	G	T	16265332	2	4	94	1	0	0	0	0	0	0	0	1	15093	1103	39	1		1	SPEN	1	16265332	Silent	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10		16265332	232985289	1	6464											
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	21133864	21133864	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagccacgtgaagaatgccGtgacagatttcagagccacg	12	11	1	5	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001198801	exon35	c.C4814G	p.T1605R	AATGCCGTGACAG		272	36	0.13	273	0	0				110	21	0.19				C	21133864	G	C	21133864	3	2	94	1	0	0	0	0	1	0	0	0	5066	1145	40	5	55	5	EIF4G3	1	21133864	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	4868532	21133864	228116757	2	6465											
WASF2	10163	broad.mit.edu	37	chr1	27736268	27736268	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcttggtggtatcagaaagCggtggtggtatagcaggctg	18	5	1	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	WASF2	NM_006990	exon8	c.G1257A	p.P419P	AGAAAGCGGTGGT		257	5	0.02	276	1	0.0036231884		41		96	0	0				T	27736268	C	T	27736268	2	4	94	1	0	0	0	0	0	0	0	1	17312	755	27	1		1	WASF2	1	27736268	Silent	SNP	C	TCGA-SN-A84Y-01A-11D-A435-10	6602404	27736268	221514353	3	6466											
CELSR2	1952	mdanderson.org	37	chr1	109792751	109792751	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaacgccgccgccgccgcTgctgctgctgttgctgctgc	12	19	0	0	rs200277265		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	CELSR2,colon,carcinoma,0,1	CELSR2	NM_001408	exon1	c.T50C	p.L17P	CGCCGCTGCTGCT		38	3	0.08	51	0	0		0	1	2	0	0				C	109792751	T	C	109792751	3	2	94	1	0	0	0	0	1	0	0	0	3244	1580	55	4	52	4	CELSR2	1	109792751	Missense_Mutation	SNP	T	TCGA-SN-A84Y-01A-11D-A435-10	82056483	109792751	139457870	4	6467											
TPR	7175	broad.mit.edu	37	chr1	186295344	186295344	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatcttcatcatcatcatcAtcttcctcatcctcttcata	0	15	11	0	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	TPR_ENST00000367478,NS,carcinoma,0,2	TPR	NM_003292	exon41	c.T5913A	p.D1971E	ATCATCATCTTCC		103	4	0.04	62	1	0.0161290323		441	2	218	0	0				T	186295344	A	T	186295344	3	4	94	1	0	0	0	0	1	0	0	0	16476	214	8	5	1222	5	TPR	1	186295344	Missense_Mutation	SNP	A	TCGA-SN-A84Y-01A-11D-A435-10	76502593	186295344	62955277	5	6468											
NT5C1B	93034	mdanderson.org	37	chr2	18766181	18766181	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccggacagcggcggcgGtgaggagtcatgcaggcttg	18	11	1	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001199087	exon5	c.C553A	p.P185T	GCGGCGGTGAGGA		19	2	0.11	26	0	0				0	0					T	18766181	G	T	18766181	3	4	94	1	0	0	0	0	1	0	0	0	10733	1261	44	3	1354	3	NT5C1B	2	18766181	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10		18766181	224433192	6	6469											
GPR39	2863	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr2	133175132	133175132	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcactgcccttgctgtttGccatgggtactgagtacccc	11	13	0	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001508	exon1	c.G517T	p.A173S	CTGTTTGCCATGG		76	4	0.05	117	0	0				2	0	0				T	133175132	G	T	133175132	3	4	94	1	0	0	0	0	1	0	0	0	6732	1319	46	2	519	2	GPR39	2	133175132	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	114408951	133175132	110024241	7	6470											
TTN	7273	mdanderson.org	37	chr2	179477207	179477207	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacaatgtagttggtgatgGgggaccctccatctttctca	10	11	2	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001267550	exon266	c.C50045A	p.P16682H	GTGATGGGGGACC		89	4	0.04	109	0	0				1	0	0				T	179477207	G	T	179477207	3	4	94	1	0	0	0	0	1	0	0	0	16796	1232	43	3	58036	3	TTN	2	179477207	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	46302075	179477207	63722166	8	6471											
FARSB	10056	broad.mit.edu	37	chr2	223488401	223488401	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtgcttcagtgaagccagCggctgccatgtcatgtcgga	13	10	2	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	FARSB,NS,carcinoma,0,1	FARSB	NM_005687	exon13	c.G1219A	p.A407T	AGCCAGCGGCTGC		450	6	0.01	482	2	0.0041493776		49	1	120	0	0				T	223488401	C	T	223488401	3	4	94	1	0	0	0	0	1	0	0	0	5712	768	27	1	570	1	FARSB	2	223488401	Missense_Mutation	SNP	C	TCGA-SN-A84Y-01A-11D-A435-10	44011194	223488401	19710972	9	6472											
NGEF	25791	ucsc.edu	37	chr2	233748732	233748732	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	accagcaggtcgttgaacagGaagaggtaaatttcgtggaa	13	6	0	2	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	NGEF	NM_019850	exon11	c.C1560A	p.F520L	GAACAGGAAGAGG		41	4	0.1	83	0	0		198		131	0	0				T	233748732	G	T	233748732	3	4	94	1	0	0	0	0	1	0	0	0	10440	1165	41	3	592	3	NGEF	2	233748732	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	10260331	233748732	9450641	10	6473											
HRH1	3269	mdanderson.org	37	chr3	11301767	11301767	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggccagcgagatatcagaGgatcagatgttaggtgatag	16	5	2	4	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_000861	exon3	c.G1044T	p.E348D	ATCAGAGGATCAG		69	4	0.06	93	0	0				1	0	0				T	11301767	G	T	11301767	3	4	94	1	0	0	0	0	1	0	0	0	7395	991	35	3	1046	3	HRH1	3	11301767	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10		11301767	186720663	11	6474											
CDC25A	993	mdanderson.org	37	chr3	48229409	48229409	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcgaagagcaggcggcggCggtgcgggggctccgggccc	22	12	0	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_201567	exon1	c.G29A	p.R10H	CGGCGGCGGTGCG		23	2	0.09	33	0	0				47	0	0				T	48229409	C	T	48229409	3	4	94	1	0	0	0	0	1	0	0	0	3084	768	27	1	1605	1	CDC25A	3	48229409	Missense_Mutation	SNP	C	TCGA-SN-A84Y-01A-11D-A435-10	36927642	48229409	149793021	12	6475											
GLYCTK	132158	mdanderson.org	37	chr3	52326751	52326751	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggaggaggctctggagaCcatggcatggggaaggggcc	20	8	1	1	rs9813489	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_145262	exon5	c.C1181A	p.T394N	TGGAGACCATGGC		40	3	0.08	51	0	0				29	0	0				A	52326751	C	A	52326751	3	1	94	1	0	0	0	0	1	0	0	0	6523	507	18	3	1195	3	GLYCTK	3	52326751	Missense_Mutation	SNP	C	TCGA-SN-A84Y-01A-11D-A435-10	4097342	52326751	145695679	13	6476											
STAB1	23166	mdanderson.org	37	chr3	52545761	52545761	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggcggctgccacggcctGgtaagggggtgcaaggctca	17	10	1	0	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_015136	exon26	c.G2883T	p.L961L	CGGCCTGGTAAGG		41	3	0.07	74	0	0				0	0					T	52545761	G	T	52545761	2	4	94	1	0	0	0	0	0	0	0	1	15292	1362	47	3		3	STAB1	3	52545761	Silent	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	219010	52545761	145476669	14	6477											
ACTR8	93973	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	53905293	53905293	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctatggaggatggctttatcCaggcccagggcttttccttc	11	11	0	0	rs371208984	alternate_allele	TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	ACTR8	NM_022899	exon11	c.G1533C	p.L511L	TTTATCCAGGCCC		164	12	0.07	208	0	0		56		77	2	0.03				G	53905293	C	G	53905293	2	3	94	1	0	0	0	0	0	0	0	1	216	581	21	5		5	ACTR8	3	53905293	Silent	SNP	C	TCGA-SN-A84Y-01A-11D-A435-10	1359532	53905293	144117137	15	6478											
IMPG2	50939	mdanderson.org	37	chr3	100963001	100963001	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcagagattgctacagatGtcagtataagaggtgctttg	13	5	1	3	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_016247	exon13	c.C2174A	p.T725K	ACAGATGTCAGTA		75	4	0.05	79	0	0				0	0					T	100963001	G	T	100963001	3	4	94	1	0	0	0	0	1	0	0	0	7772	1377	48	3	1579	3	IMPG2	3	100963001	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	47057708	100963001	97059429	16	6479											
KLF3	51274	mdanderson.org	37	chr4	38696516	38696516	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccacttgaaagcacacagaaGaacacacacaggtaatagaa	7	10	0	4	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_016531	exon5	c.G845T	p.R282I	ACAGAAGAACACA		34	3	0.09	77	0	0				16	0	0				T	38696516	G	T	38696516	3	4	94	1	0	0	0	0	1	0	0	0	8389	942	33	3	859	3	KLF3	4	38696516	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10		38696516	152457760	17	6480											
FRAS1	80144	mdanderson.org	37	chr4	79284686	79284686	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gactgccatcacctgtgccaGcactgtgcagctgatctcca	9	15	2	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_025074	exon21	c.G2442A	p.Q814Q	GTGCCAGCACTGT		44	3	0.07	57	0	0				1	0	0				A	79284686	G	A	79284686	2	1	94	1	0	0	0	0	0	0	0	1	6075	962	34	2		2	FRAS1	4	79284686	Silent	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	40588170	79284686	111869590	18	6481											
MAML3	55534	hgsc.bcm.edu	37	chr4	140811125	140811125	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgctgctgctgctgttGctgttgctgtttctgctgca	12	11	1	0	rs62344940		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	MAML3_ENST00000509479,colon,carcinoma,+2,2	MAML3_ENST00000509479	NM_018717	exon2	c.C1465A	p.Q489K	GCTGTTGCTGTTG		52	8	0.15	68	2	0.0294117647		2	2	4	0	0				T	140811125	G	T	140811125	3	4	94	1	0	0	0	0	1	0	0	0	9256	1328	46	2	1959	2	MAML3	4	140811125	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	61526439	140811125	50343151	19	6482											
GAB1	2549	mdanderson.org	37	chr4	144378923	144378923	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgctacaagaagaaaggGtatgtactttagcaccgcat	9	8	0	2	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_207123	exon7	c.1675+1G>T	.	GAAAGGGTATGTA		47	3	0.06	42	0	0				0	0					T	144378923	G	T	144378923	5	4	94	1	0	0	0	0	0	0	1	0	6182	1275	44	3	1702	3	GAB1	4	144378923	Splice_Site	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	3567798	144378923	46775353	20	6483											
CLCN3	1182	mdanderson.org	37	chr4	170557224	170557224	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatgacaatttattagatGgtgacactgcagttggtaag	11	4	0	4	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001243372	exon2	c.G145T	p.G49C	TTAGATGGTGACA		45	3	0.07	33	0	0				9	0	0				T	170557224	G	T	170557224	3	4	94	1	0	0	0	0	1	0	0	0	3487	1348	47	3	147	3	CLCN3	4	170557224	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	26178301	170557224	20597052	21	6484											
GALNT7	51809	mdanderson.org	37	chr4	174169131	174169131	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	atcccctcccttttgtatagGaagacagagatgtcaatgac	8	10	1	3	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_017423	exon2	c.G127T	p.E43X	GTATAGGAAGACA		43	3	0.07	51	0	0				24	0	0				T	174169131	G	T	174169131	4	4	94	1	0	0	0	0	0	1	0	0	6257	1188	41	3	133	3	GALNT7	4	174169131	Nonsense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	3611907	174169131	16985145	22	6485											
TRIP13	9319	mdanderson.org	37	chr5	893132	893132	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccatggacgaggccgtgggcGacctgaagcaggcgcttccc	15	14	0	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001166260	exon1	c.G19T	p.D7Y	GTGGGCGACCTGA		52	3	0.06	68	0	0				45	0	0				T	893132	G	T	893132	3	4	94	1	0	0	0	0	1	0	0	0	16617	1058	37	1	21	1	TRIP13	5	893132	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10		893132	180022128	23	6486											
SPZ1	84654	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	79616895	79616895	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	actcttggaaataatggagtCggtttccaaacccagccaaa	8	10	1	0	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	SPZ1	NM_032567	exon1	c.C861G	p.V287V	TGGAGTCGGTTTC		327	88	0.27	232	3	0.0129310345		60		5	2	0.4				G	79616895	C	G	79616895	2	3	94	1	0	0	0	0	0	0	0	1	15182	871	31	5		5	SPZ1	5	79616895	Silent	SNP	C	TCGA-SN-A84Y-01A-11D-A435-10	78723763	79616895	101298365	24	6487											
UNC5A	90249	broad.mit.edu	37	chr5	176295152	176295152	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcccaccatggaggtccGcattaatgtctcaaggcagc	11	13	1	0	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	UNC5A	NM_133369	exon3	c.G314T	p.R105L	AGGTCCGCATTAA		159	6	0.04	144	0	0		76		2	0	0				T	176295152	G	T	176295152	3	4	94	1	0	0	0	0	1	0	0	0	17050	1087	38	1	324	1	UNC5A	5	176295152	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	96678257	176295152	4620108	25	6488											
UBR2	23304	broad.mit.edu	37	chr6	42615876	42615876	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaacaaggagactggcatGgagagtgtaatcgaagcagt	15	5	0	3	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	UBR2	NM_015255	exon22	c.G2430T	p.M810I	TGGCATGGAGAGT		299	4	0.01	153	0	0		134		42	0	0				T	42615876	G	T	42615876	3	4	94	1	0	0	0	0	1	0	0	0	16962	1348	47	3	2662	3	UBR2	6	42615876	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10		42615876	128499191	26	6489											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	82582694	82582694	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggggtgtatatctgttggTttttgtgtagttgttggaag	15	1	1	0	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	Q9Y6V0-3,rectum,carcinoma,0,3	Q9Y6V0-3	NM_014510	exon5	c.A7575C	p.K2525N	TGTTGGTTTTTGT		110	33	0.3	100	0	0		0	3	0	0					G	82582694	T	G	82582694	3	3	94	1	0	0	0	0	1	0	0	0	11629	1722	60	4	7954	4	PCLO	7	82582694	Missense_Mutation	SNP	T	TCGA-SN-A84Y-01A-11D-A435-10		82582694	76555969	27	6490											
SSPO	23145	mdanderson.org	37	chr7	149483303	149483303	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgggcctcaccctgctctGggatggagatcaggcccctg	13	15	3	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	Q76B61_HUMAN,colon,carcinoma,-1,2	Q76B61_HUMAN	NM_198455	exon23	c.G3371T	p.W1124L	TGCTCTGGGATGG		38	3	0.08	62	0	0		-1	2	0	0					T	149483303	G	T	149483303	3	4	94	1	0	0	0	0	1	0	0	0	15244	1357	47	3	3457	3	SSPO	7	149483303	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	66900609	149483303	9655360	28	6491											
ADAMDEC1	27299	broad.mit.edu	37	chr8	24256526	24256526	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagttctaacctggggaaaaAgatccacgaccatgctcagc	9	12	2	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	ADAMDEC1	NM_014479	exon9	c.A902G	p.K301R	GGAAAAAGATCCA		173	4	0.02	127	0	0		69		2	0	0				G	24256526	A	G	24256526	3	3	94	1	0	0	0	0	1	0	0	0	253	72	3	4	936	4	ADAMDEC1	8	24256526	Missense_Mutation	SNP	A	TCGA-SN-A84Y-01A-11D-A435-10		24256526	122107496	29	6492											
ADAM2	2515	broad.mit.edu	37	chr8	39678591	39678591	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cattatataaggaaacatctGctttcttatgttttacttgg	6	6	2	0	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	ADAM2	NM_001464	exon6	c.C443A	p.A148E	ACATCTGCTTTCT		273	6	0.02	100	0	0		124		0	0					T	39678591	G	T	39678591	3	4	94	1	0	0	0	0	1	0	0	0	240	1319	46	2	1824	2	ADAM2	8	39678591	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	15422065	39678591	106685431	30	6493											
PKHD1L1	93035	broad.mit.edu	37	chr8	110422126	110422126	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggaagaaatggttagcacTaagtgtccaccacaaattgc	10	8	0	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	PKHD1L1	NM_177531	exon19	c.T2004C	p.T668T	TAGCACTAAGTGT		511	4	0.01	254	0	0		522		0	0					C	110422126	T	C	110422126	2	2	94	1	0	0	0	0	0	0	0	1	12019	1509	53	4		4	PKHD1L1	8	110422126	Silent	SNP	T	TCGA-SN-A84Y-01A-11D-A435-10	70743535	110422126	35941896	31	6494											
BNC2	54796	mdanderson.org	37	chr9	16419625	16419625	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggtcaacagtttacgatGtaggtttatgttggcactgt	11	5	1	0	rs370046975	alternate_allele	TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_017637	exon7	c.C2662A	p.H888N	TACGATGTAGGTT		49	3	0.06	57	0	0				25	0	0				T	16419625	G	T	16419625	3	4	94	1	0	0	0	0	1	0	0	0	1474	1377	48	3	641	3	BNC2	9	16419625	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10		16419625	124793806	32	6495											
MLLT3	4300	hgsc.bcm.edu;broad.mit.edu	37	chr9	20414311	20414313	+	In_Frame_Del	DEL	CTG	CTG	-													tgctgctactgctgctgctaCtgctgctgctgctgctgctg					rs373338988		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	CTG	CTG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	MLLT3,caecum,carcinoma,0,1	MLLT3	NM_004529	exon5	c.532_534del	p.178_178del	CTGCTACTGCTGC		89	18	0.2	75	0	0		125		3	0	0				-	20414313	CTG	-	20414311	7	5	94	1	0	1	0	1	0	0	0	0	9675	565	20	0	1201	0	MLLT3	9	20414311	In_Frame_Del	DEL	CTG	TCGA-SN-A84Y-01A-11D-A435-10	3994686	20414311	120799120	33	6496											
ARL5B	221079	mdanderson.org	37	chr10	18948572	18948572	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccggtgctcgtgatgggGctgatcttcgccaaactgtg	14	12	1	2	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_178815	exon1	c.G6T	p.G2G	GATGGGGCTGATC		74	4	0.05	95	0	0				10	0	0				T	18948572	G	T	18948572	2	4	94	1	0	0	0	0	0	0	0	1	939	1190	42	2		2	ARL5B	10	18948572	Silent	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10		18948572	116586175	34	6497											
ALDH18A1	5832	mdanderson.org	37	chr10	97397175	97397175	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cagcatcatctctctgccctGattctgcagcactgatacct	6	15	4	2	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001017423	exon4	c.C322A	p.Q108K	TGCCCTGATTCTG		58	4	0.07	67	0	0				126	0	0				T	97397175	G	T	97397175	3	4	94	1	0	0	0	0	1	0	0	0	486	1299	45	3	2125	3	ALDH18A1	10	97397175	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	78448603	97397175	38137572	35	6498											
FJX1	24147	mdanderson.org	37	chr11	35640729	35640729	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcgcctgcgtgcgctacgGcatcaacccggagcagattc	12	16	1	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_014344	exon1	c.G545T	p.G182V	GCTACGGCATCAA		10	2	0.2	23	0	0				5	0	0				T	35640729	G	T	35640729	3	4	94	1	0	0	0	0	1	0	0	0	5933	1203	42	2	547	2	FJX1	11	35640729	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10		35640729	99365787	36	6499											
OR5AP2	338675	mdanderson.org	37	chr11	56409844	56409844	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgtagatctggattgtcGgaaagtcctaagaggagaaa	12	6	1	3	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001002925	exon1	c.C72T	p.S24S	ATTGTCGGAAAGT		31	3	0.1	33	0	0				0	0					A	56409844	G	A	56409844	2	1	94	1	0	0	0	0	0	0	0	1	11190	1103	39	1		1	OR5AP2	11	56409844	Silent	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	20769115	56409844	78596672	37	6500											
CTNND1	1500	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	57573388	57573392	+	Frame_Shift_Del	DEL	TATCA	TATCA	-													tgtttgccttcttcggaactTatcatatcaagttcaccggg					novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	TATCA	TATCA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	CTNND1	NM_001085461	exon10	c.1756_1760del	p.586_587del	GGAACTTATCATA		86	31	0.36	99	0	0		203		61	0	0				-	57573392	TATCA	-	57573388	7	5	94	1	0	1	0	1	0	0	0	0	4043	1764	61	0	1787	0	CTNND1	11	57573388	Frame_Shift_Del	DEL	TATCA	TCGA-SN-A84Y-01A-11D-A435-10	1163544	57573388	77433128	38	6501											
ZP1	22917	mdanderson.org	37	chr11	60640737	60640737	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgacccagcccggccccctGcggcttgagctgcggattgc	13	16	0	2	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_207341	exon7	c.G1215T	p.L405L	CCCCCTGCGGCTT		65	4	0.06	113	0	0				0	0					T	60640737	G	T	60640737	2	4	94	1	0	0	0	0	0	0	0	1	18256	1306	46	2		2	ZP1	11	60640737	Silent	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	3067349	60640737	74365779	39	6502											
ZNHIT2	741	mdanderson.org	37	chr11	64884376	64884376	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacttgctgggcacccagGgctccggaaacgccgagcag	14	13	0	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_014205	exon1	c.C750A	p.A250A	ACCCAGGGCTCCG		19	2	0.11	36	0	0				41	0	0				T	64884376	G	T	64884376	2	4	94	1	0	0	0	0	0	0	0	1	18248	1219	43	3		3	ZNHIT2	11	64884376	Silent	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	4243639	64884376	70122140	40	6503											
RNASEH2C	84153	mdanderson.org	37	chr11	65487864	65487864	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcctctccccgtagacagCggccccgaaacgacacttcg	8	19	1	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_032193	exon2	c.G197A	p.R66H	AGACAGCGGCCCC		48	3	0.06	82	0	0				193	0	0				T	65487864	C	T	65487864	3	4	94	1	0	0	0	0	1	0	0	0	13465	768	27	1	309	1	RNASEH2C	11	65487864	Missense_Mutation	SNP	C	TCGA-SN-A84Y-01A-11D-A435-10	603488	65487864	69518652	41	6504											
PDE2A	5138	broad.mit.edu	37	chr11	72299854	72299854	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttctagcttgttgaaggcGcaggccaaggccaccacctg	11	14	1	1	rs138984931	bycluster;byfrequency;by1000genomes	TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	PDE2A	NM_002599	exon13	c.C1044T	p.C348C	GAAGGCGCAGGCC		135	4	0.03	158	0	0		156		1	0	0				A	72299854	G	A	72299854	2	1	94	1	0	0	0	0	0	0	0	1	11682	1079	38	1		1	PDE2A	11	72299854	Silent	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	6811990	72299854	62706662	42	6505											
PDE3A	5139	broad.mit.edu	37	chr12	20522511	20522511	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtaaggaggcggcggcggCggaggaggaggaagcagccc	22	8	0	0	rs200052001	bycluster	TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	PDE3A,colon,NS,0,1	PDE3A	NM_000921	exon1	c.C293A	p.A98E	CGGCGGCGGAGGA		88	4	0.05	45	1	0.0222222222		184	1	0	0					A	20522511	C	A	20522511	3	1	94	1	0	0	0	0	1	0	0	0	11683	768	27	1	295	1	PDE3A	12	20522511	Missense_Mutation	SNP	C	TCGA-SN-A84Y-01A-11D-A435-10		20522511	113329384	43	6506											
MARS	4141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	57898052	57898052	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tcatgccctgtggtgcagtcGagccagcacctgtttctgga	12	12	2	0	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	MARS,colon,carcinoma,+1,3	MARS	NM_004990	exon11	c.G1338C	p.S446S	GCAGTCGAGCCAG		187	19	0.1	156	1	0.0064102564		1	3	570	63	0.11				C	57898052	G	C	57898052	2	2	94	1	0	0	0	0	0	0	0	1	9365	1045	37	5		5	MARS	12	57898052	Silent	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	37375541	57898052	75953843	44	6507											
PLBD2	196463	mdanderson.org	37	chr12	113826311	113826311	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagcctgctggcggccagCggtcccacgtgggaccaggt	16	14	0	1	rs377323141		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_173542	exon12	c.C1650T	p.S550S	GGCCAGCGGTCCC		26	2	0.08	29	0	0				49	0	0				T	113826311	C	T	113826311	2	4	94	1	0	0	0	0	0	0	0	1	12073	767	27	1		1	PLBD2	12	113826311	Silent	SNP	C	TCGA-SN-A84Y-01A-11D-A435-10	55928259	113826311	20025584	45	6508											
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	130184692	130184692	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtccacggacttcctcctccCggcaaccaccgtgggggggc	13	17	0	0	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	TMEM132D,face,carcinoma,0,1	TMEM132D	NM_133448	exon2	c.G631C	p.G211R	TCCTCCCGGCAAC		85	15	0.18	97	0	0		0	1	8	3	0.38				G	130184692	C	G	130184692	3	3	94	1	0	0	0	0	1	0	0	0	16106	652	23	5	2700	5	TMEM132D	12	130184692	Missense_Mutation	SNP	C	TCGA-SN-A84Y-01A-11D-A435-10	16358381	130184692	3667203	46	6509											
ULK1	8408	mdanderson.org	37	chr12	132398927	132398927	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgttctccagcagcaggtgCggcgcctctgtccccatccc	10	19	2	0	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_003565	exon16	c.C1278T	p.C426C	CAGGTGCGGCGCC		33	3	0.09	53	0	0				97	0	0				T	132398927	C	T	132398927	2	4	94	1	0	0	0	0	0	0	0	1	17034	776	27	1		1	ULK1	12	132398927	Silent	SNP	C	TCGA-SN-A84Y-01A-11D-A435-10	2214235	132398927	1452968	47	6510											
COL4A2	1284	mdanderson.org	37	chr13	111080922	111080922	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggctctgaggggttcaccGggcctcccgtgagtatcccc	13	16	2	2	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001846	exon7	c.G469T	p.G157W	TTCACCGGGCCTC		37	3	0.08	75	0	0				111	0	0				T	111080922	G	T	111080922	3	4	94	1	0	0	0	0	1	0	0	0	3713	1116	39	1	491	1	COL4A2	13	111080922	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10		111080922	4088956	48	6511											
GAS6	2621	mdanderson.org	37	chr13	114542742	114542742	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagccagctttacacaggCagaagaagttgcccatgagg	11	12	0	3	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_000820	exon5	c.G425T	p.C142F	CACAGGCAGAAGA		49	3	0.06	98	0	0				67	0	0				A	114542742	C	A	114542742	3	1	94	1	0	0	0	0	1	0	0	0	6288	710	25	2	1655	2	GAS6	13	114542742	Missense_Mutation	SNP	C	TCGA-SN-A84Y-01A-11D-A435-10	3461820	114542742	627136	49	6512											
CHGA	1113	mdanderson.org	37	chr14	93398725	93398725	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgctccaggtcggtcggaGgctctggctgtggatggagc	17	11	1	0	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001275	exon7	c.G819T	p.E273D	GTCGGAGGCTCTG		45	3	0.07	91	0	0				72	0	0				T	93398725	G	T	93398725	3	4	94	1	0	0	0	0	1	0	0	0	3360	991	35	3	845	3	CHGA	14	93398725	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10		93398725	13950815	50	6513											
NUDT14	256281	mdanderson.org	37	chr14	105639424	105639424	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acaccaaagatgacgccgagGgtcttggggatgtccgggtc	15	10	1	2	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_177533	exon5	c.C603A	p.T201T	GCCGAGGGTCTTG		45	3	0.07	58	0	0				122	0	0				T	105639424	G	T	105639424	2	4	94	1	0	0	0	0	0	0	0	1	10777	1219	43	3		3	NUDT14	14	105639424	Silent	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	12240699	105639424	1710116	51	6514											
VPS13C	54832	broad.mit.edu	37	chr15	62283898	62283898	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatcaatgattcttcgtccTttttcttagactctttctta	4	9	5	2	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	VPS13C	NM_020821	exon17	c.A1457G	p.K486R	TCGTCCTTTTTCT		286	4	0.01	172	0	0		506		1	0	0				C	62283898	T	C	62283898	3	2	94	1	0	0	0	0	1	0	0	0	17250	1609	56	4	10108	4	VPS13C	15	62283898	Missense_Mutation	SNP	T	TCGA-SN-A84Y-01A-11D-A435-10		62283898	40247494	52	6515											
IGDCC4	57722	mdanderson.org	37	chr15	65688201	65688201	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggcgtagcagtgacccgcGtgggggcgctgggcagcccc	19	13	0	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_020962	exon7	c.C1298A	p.T433K	ACCCGCGTGGGGG		20	2	0.1	11	0	0				0	0					T	65688201	G	T	65688201	3	4	94	1	0	0	0	0	1	0	0	0	7612	1145	40	1	2510	1	IGDCC4	15	65688201	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	3404303	65688201	36843191	53	6516											
PCSK6	5046	broad.mit.edu	37	chr15	101968168	101968168	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagcagcaacttctcccGcacaacgagtgccgtgtctg	10	14	2	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	PCSK6	.	.	.	.	TCTCCCGCACAAC		56	3	0.05	71	0	0		202		16	0	0				A	101968168	G	A	101968168	3	1	94	1	0	0	0	0	1	0	0	0	11650	1087	38	1	2704	1	PCSK6	15	101968168	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	36279967	101968168	563224	54	6517											
CLCN7	1186	mdanderson.org	37	chr16	1510494	1510494	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccacagcaacagggagaaGgacagtccgcccttctctgt	11	14	1	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001287	exon6	c.C519A	p.S173S	GGAGAAGGACAGT		51	3	0.06	58	1	0.0172413793				50	0	0				T	1510494	G	T	1510494	2	4	94	1	0	0	0	0	0	0	0	1	3491	987	35	3		3	CLCN7	16	1510494	Silent	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10		1510494	88844259	55	6518											
C16orf59	80178	mdanderson.org	37	chr16	2514567	2514567	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggtaagcgctgcacagccGcaggggccgccctggctggc	16	15	0	0	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_025108	exon10	c.G1200A	p.P400P	ACAGCCGCAGGGG		41	3	0.07	42	0	0				53	0	0				A	2514567	G	A	2514567	2	1	94	1	0	0	0	0	0	0	0	1	1830	1074	38	1		1	C16orf59	16	2514567	Silent	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	1004073	2514567	87840186	56	6519											
USP7	7874	mdanderson.org	37	chr16	9057131	9057131	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctgctgctgctgctgctgCtggtggttcatgtcggccgc	14	12	2	0	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	USP7,colon,carcinoma,0,1	USP7	NM_003470	exon1	c.G12C	p.Q4H	CTGCTGCTGGTGG		12	3	0.25	17	0	0		0	1	31	0	0				G	9057131	C	G	9057131	3	3	94	1	0	0	0	0	1	0	0	0	17147	796	28	5	3420	5	USP7	16	9057131	Missense_Mutation	SNP	C	TCGA-SN-A84Y-01A-11D-A435-10	6542564	9057131	81297622	57	6520											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	30748991	30748991	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcctcagtcactaatctcCccttgggcttgaggcctgag	10	14	3	2	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_006662	exon34	c.C7630T	p.P2544S	AATCTCCCCTTGG		117	31	0.26	117	0	0				152	57	0.38				T	30748991	C	T	30748991	3	4	94	1	0	0	0	0	1	0	0	0	15190	623	22	3	7756	3	SRCAP	16	30748991	Missense_Mutation	SNP	C	TCGA-SN-A84Y-01A-11D-A435-10	21691860	30748991	59605762	58	6521											
CNOT1	23019	mdanderson.org	37	chr16	58589745	58589745	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tatattcgctggaaatagctGtttgcttcatcatctatctc	6	9	4	0	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	CNOT1_ENST00000441024,NS,carcinoma,-2,2	CNOT1_ENST00000441024	NM_016284	exon20	c.C2547A	p.N849K	ATAGCTGTTTGCT		49	3	0.06	51	0	0		-2	2	101	0	0				T	58589745	G	T	58589745	3	4	94	1	0	0	0	0	1	0	0	0	3640	1368	48	3	4925	3	CNOT1	16	58589745	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	27840754	58589745	31765008	59	6522											
LRRC36	55282	mdanderson.org	37	chr16	67360773	67360773	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggcgggcggggatggcggAgcaatgggagctggacgagg	24	7	0	0	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_018296	exon1	c.A8G	p.E3G	TGGCGGAGCAATG		16	5	0.31	16	0	0				0	0					G	67360773	A	G	67360773	3	3	94	1	0	0	0	0	1	0	0	0	9034	304	11	4	10	4	LRRC36	16	67360773	Missense_Mutation	SNP	A	TCGA-SN-A84Y-01A-11D-A435-10	8771028	67360773	22993980	60	6523											
ZFHX3	463	mdanderson.org	37	chr16	72821624	72821624	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgccgccgccgccaccgccGccgccgccgccactgccacc	10	27	0	0	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_006885	exon10	c.C10551T	p.G3517G	ACCGCCGCCGCCG		26	3	0.12	21	0	0				0	0					A	72821624	G	A	72821624	2	1	94	1	0	0	0	0	0	0	0	1	17691	1074	38	1		1	ZFHX3	16	72821624	Silent	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	5460851	72821624	17533129	61	6524											
FAM101B	359845	broad.mit.edu	37	chr17	295717	295717	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacagccgggagccagggggAgagacgctggactcttcaag	16	11	2	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	FAM101B	.	.	.	.	AGGGGGAGAGACG		538	7	0.01	525	5	0.0095238095		19		18	0	0				G	295717	A	G	295717	3	3	94	1	0	0	0	0	1	0	0	0	5412	291	11	4	428	4	FAM101B	17	295717	Missense_Mutation	SNP	A	TCGA-SN-A84Y-01A-11D-A435-10		295717	80899493	62	6525											
SREBF1	6720	broad.mit.edu	37	chr17	17716753	17716753	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtgtccgtgtggggctgGcccccgccatcagccgggcc	17	15	1	0	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	SREBF1	NM_001005291	exon19	c.C3233G	p.A1078G	GGGCTGGCCCCCG		48	9	0.19	59	3	0.0508474576		47		92	6	0.07				C	17716753	G	C	17716753	3	2	94	1	0	0	0	0	1	0	0	0	15196	1203	42	5	308	5	SREBF1	17	17716753	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	17421036	17716753	63478457	63	6526											
HDAC5	10014	mdanderson.org	37	chr17	42155923	42155923	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctcggcccccaccgacaGcaaggccatggcgctcacag	11	18	1	0	rs377012839	alternate_allele	TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001015053	exon26	c.C3277A	p.L1093M	CCGACAGCAAGGC		45	3	0.07	46	0	0				172	0	0				T	42155923	G	T	42155923	3	4	94	1	0	0	0	0	1	0	0	0	7050	962	34	2	102	2	HDAC5	17	42155923	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	24439170	42155923	39039287	64	6527											
C17orf104	284071	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	42744013	42744016	+	Frame_Shift_Del	DEL	CTAA	CTAA	-													cccctcacgaagtgatcattCtaactgtcacaatattcaga					novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	CTAA	CTAA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	C17orf104	NM_001145080	exon5	c.733_736del	p.245_246del	ATCATTCTAACTG		153	36	0.24	65	0	0		75		7	0	0				-	42744016	CTAA	-	42744013	7	5	94	1	0	1	0	1	0	0	0	0	1858	913	32	0	752	0	C17orf104	17	42744013	Frame_Shift_Del	DEL	CTAA	TCGA-SN-A84Y-01A-11D-A435-10	588090	42744013	38451197	65	6528											
CELF4	56853	mdanderson.org	37	chr18	34844656	34844656	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccttctctctgctgctggggGatcattggaggcggctgagg	16	10	3	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_020180	exon10	c.C1230A	p.I410I	CTGGGGGATCATT		40	3	0.08	64	0	0				4	0	0				T	34844656	G	T	34844656	2	4	94	1	0	0	0	0	0	0	0	1	3240	1164	41	3		3	CELF4	18	34844656	Silent	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10		34844656	43232592	66	6529											
WDR7	23335	mdanderson.org	37	chr18	54398712	54398712	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgattcacttagtcatccaGcagtcaacctaaaacaagct	5	11	3	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_052834	exon14	c.G1873T	p.A625S	CATCCAGCAGTCA		108	5	0.05	115	0	0				3	0	0				T	54398712	G	T	54398712	3	4	94	1	0	0	0	0	1	0	0	0	17379	971	34	2	1923	2	WDR7	18	54398712	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	19554056	54398712	23678536	67	6530											
APC2	10297	mdanderson.org	37	chr19	1468858	1468858	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccaagacctcggagctggCgacgctgagccagcccccca	12	17	0	2	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_005883	exon15	c.C5558T	p.A1853V	AGCTGGCGACGCT		12	2	0.17	10	0	0				0	0					T	1468858	C	T	1468858	3	4	94	1	0	0	0	0	1	0	0	0	760	768	27	1	5612	1	APC2	19	1468858	Missense_Mutation	SNP	C	TCGA-SN-A84Y-01A-11D-A435-10		1468858	57660125	68	6531											
LONP1	9361	mdanderson.org	37	chr19	5720014	5720014	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagaggcgtcgcaggtccGctggcctcggagcaaccacg	16	13	0	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_004793	exon1	c.G130A	p.G44S	AGGTCCGCTGGCC		52	4	0.08	101	0	0				51	0	0				T	5720014	G	T	5720014	3	4	94	1	0	0	0	0	1	0	0	0	8936	1086	38	1	2821	1	LONP1	19	5720014	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	4251156	5720014	53408969	69	6532											
EMR1	2015	mdanderson.org	37	chr19	6921799	6921799	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaagatggacatcctttGgctgtgtgatcctggaagct	14	7	0	2	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001974	exon14	c.G1696T	p.G566C	TCCTTTGGCTGTG		71	4	0.06	117	1	0.0085470085				3	0	0				T	6921799	G	T	6921799	3	4	94	1	0	0	0	0	1	0	0	0	5132	1348	47	3	1750	3	EMR1	19	6921799	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	1201785	6921799	52207184	70	6533											
DNMT1	1786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	10260600	10260600	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccccacttccagggtttcCgcatcaatgcacaccttctt	5	17	2	0	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	DNMT1,NS,carcinoma,0,1	DNMT1	NM_001130823	exon25	c.G2310T	p.A770A	GGTTTCCGCATCA		188	77	0.41	274	0	0		0	1	91	48	0.53				A	10260600	C	A	10260600	2	1	94	1	0	0	0	0	0	0	0	1	4702	639	23	1		1	DNMT1	19	10260600	Silent	SNP	C	TCGA-SN-A84Y-01A-11D-A435-10	3338801	10260600	48868383	71	6534											
ASF1B	55723	mdanderson.org	37	chr19	14236985	14236985	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagggcccaccagcaccgaGtctaggatctgatcaaattc	9	13	3	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_018154	exon2	c.C174A	p.D58E	CACCGAGTCTAGG		39	3	0.08	83	0	0				106	0	0				T	14236985	G	T	14236985	3	4	94	1	0	0	0	0	1	0	0	0	1037	1020	36	3	446	3	ASF1B	19	14236985	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	3976385	14236985	44891998	72	6535											
SPTBN4	57731	bcgsc.ca	37	chr19	41025454	41025454	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagagcgcgccccgggccgGcggcgccctgcagtggcgtc	19	16	0	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	SPTBN4	NM_020971	exon16	c.G3050T	p.G1017V	GGGCCGGCGGCGC		33	4	0.12	44	0	0		213		0	0					T	41025454	G	T	41025454	3	4	94	1	0	0	0	0	1	0	0	0	15176	1203	42	2	3108	2	SPTBN4	19	41025454	Missense_Mutation	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	26788469	41025454	18103529	73	6536											
ARHGEF1	9138	mdanderson.org	37	chr19	42399474	42399474	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtggggatgccctctcgGgaccggaatatcggggctcc	17	12	1	0	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_199002	exon12	c.G975T	p.R325R	CTCTCGGGACCGG		42	3	0.07	37	0	0				69	0	0				T	42399474	G	T	42399474	2	4	94	1	0	0	0	0	0	0	0	1	890	1219	43	3		3	ARHGEF1	19	42399474	Silent	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	1374020	42399474	16729509	74	6537											
ZNF497	162968	mdanderson.org	37	chr19	58868528	58868528	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaagcgtagggcttctcGccgctgtggatgcgctggtg	16	11	1	0	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_198458	exon3	c.C474A	p.G158G	CTTCTCGCCGCTG		55	4	0.07	61	0	0				9	0	0				T	58868528	G	T	58868528	2	4	94	1	0	0	0	0	0	0	0	1	18002	1074	38	1		1	ZNF497	19	58868528	Silent	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10	16469054	58868528	260455	75	6538											
BHLHE23	128408	mdanderson.org	37	chr20	61637701	61637701	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gggctgtgcgcgtaggggatGacggctcgcagcccgtccag	18	12	0	1	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_080606	exon1	c.C378A	p.V126V	GGGGATGACGGCT		24	3	0.13	33	0	0				17	0	0				T	61637701	G	T	61637701	2	4	94	1	0	0	0	0	0	0	0	1	1421	1277	45	3		3	BHLHE23	20	61637701	Silent	SNP	G	TCGA-SN-A84Y-01A-11D-A435-10		61637701	1387819	76	6539											
ZBED1	9189	broad.mit.edu	37	chrX	2406764	2406764	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcctggtccaggccccacTccccctcgtcctggtcctcg	9	21	0	0	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	ZBED1	NM_001171135	exon2	c.A1997G	p.E666G	CCCCACTCCCCCT		251	14	0.06	331	3	0.0090634441		64		61	0	0				C	2406764	T	C	2406764	3	2	94	1	0	0	0	0	1	0	0	0	17576	1551	54	4	91	4	ZBED1	23	2406764	Missense_Mutation	SNP	T	TCGA-SN-A84Y-01A-11D-A435-10		2406764	152863796	77	6540											
CSMD2	114784	mdanderson.org	37	chr1	34276465	34276465	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggcatcacacatgcggGctgcagaggagatgaaagac	16	8	1	4	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_052896	exon10	c.C1205A	p.A402D	ATGCGGGCTGCAG		49	3	0.06	45	0	0				4	0	0				T	34276465	G	T	34276465	3	4	95	1	0	0	0	0	1	0	0	0	3970	1217	42	2	9498	2	CSMD2	1	34276465	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10		34276465	214974156	1	6541											
SUSD4	55061	mdanderson.org	37	chr1	223396687	223396687	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagggtgggtgctctcttGgcacctgggaggtgaataca	16	8	1	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_017982	exon8	c.C1348A	p.Q450K	TCTCTTGGCACCT		39	3	0.08	45	0	0				7	0	0				T	223396687	G	T	223396687	3	4	95	1	0	0	0	0	1	0	0	0	15465	1357	47	3	132	3	SUSD4	1	223396687	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	189120222	223396687	25853934	2	6542											
WDR26	80232	broad.mit.edu	37	chr1	224581650	224581651	+	Frame_Shift_Del	DEL	GT	GT	-													gctcacacagtttactgtacGtgtgtgccctgtcagctccg					novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	GT	GT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	WDR26	NM_025160	exon13	c.1839_1840del	p.613_614del	CTGTACGTGTGTG		266	8	0.03	224	0	0		104		247	0	0				-	224581651	GT	-	224581650	7	5	95	1	0	1	0	1	0	0	0	0	17342	1145	40	0	153	0	WDR26	1	224581650	Frame_Shift_Del	DEL	GT	TCGA-SO-A8JP-01A-11D-A435-10	1184963	224581650	24668971	3	6543											
OR6F1	343169	mdanderson.org	37	chr1	247875953	247875953	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaccactaactgtgaggatGtacatcaccagaaaaagcat	7	9	1	2	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001005286	exon1	c.C105A	p.Y35X	GAGGATGTACATC		41	3	0.07	43	0	0				0	0					T	247875953	G	T	247875953	4	4	95	1	0	0	0	0	0	1	0	0	11247	1372	48	3	825	3	OR6F1	1	247875953	Nonsense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	23294303	247875953	1374668	4	6544											
RNASEH1	246243	bcgsc.ca;mdanderson.org	37	chr2	3605788	3605788	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aacatcccgaacccgcgagaGccgcggcggcagggcaaggc	15	15	0	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	RNASEH1	NM_002936	exon1	c.C63A	p.G21G	GCGAGAGCCGCGG		91	5	0.05	55	0	0		27		201	0	0				T	3605788	G	T	3605788	2	4	95	1	0	0	0	0	0	0	0	1	13462	958	34	2		2	RNASEH1	2	3605788	Silent	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10		3605788	239593585	5	6545											
WDR35	57539	ucsc.edu	37	chr2	20113319	20113319	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atatacagtttatcattcctTtatcccactggactatggca	5	10	1	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	WDR35	NM_001006657	exon28	c.A3546G	p.X1182X	ATTCCTTTATCCC		203	1	0	118	0	0		92		24	7	0.29				C	20113319	T	C	20113319	2	2	95	1	0	0	0	0	0	0	0	1	17348	1848	64	4		4	WDR35	2	20113319	Silent	SNP	T	TCGA-SO-A8JP-01A-11D-A435-10	16507531	20113319	223086054	6	6546											
DPYSL5	56896	mdanderson.org	37	chr2	27150268	27150268	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acattggggcaatcgcccgcGtccatgctgaaaatggggag	14	10	0	1	rs144366814	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_020134	exon4	c.G568T	p.V190F	GCCCGCGTCCATG		129	5	0.04	91	0	0				120	0	0				T	27150268	G	T	27150268	3	4	95	1	0	0	0	0	1	0	0	0	4776	1145	40	1	578	1	DPYSL5	2	27150268	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	7036949	27150268	216049105	7	6547											
HK2	3099	broad.mit.edu	37	chr2	75107420	75107420	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgtctacataagaccgtgCggcggctggtgcccggctgc	15	13	1	1	rs148796379	bycluster;byfrequency	TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	HK2	NM_000189	exon10	c.C1294T	p.R432W	ACCGTGCGGCGGC		139	4	0.03	93	0	0		85		41	1	0.02				T	75107420	C	T	75107420	3	4	95	1	0	0	0	0	1	0	0	0	7231	759	27	1	1332	1	HK2	2	75107420	Missense_Mutation	SNP	C	TCGA-SO-A8JP-01A-11D-A435-10	47957152	75107420	168091953	8	6548											
DPP4	1803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	162865128	162865128	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccacacttgaacacgccaCttcccgatcccaggaccatt	5	17	0	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001935	exon22	c.G1931A	p.S644N	ACGCCACTTCCCG		123	18	0.15	82	0	0				3	0	0				T	162865128	C	T	162865128	3	4	95	1	0	0	0	0	1	0	0	0	4755	565	20	3	389	3	DPP4	2	162865128	Missense_Mutation	SNP	C	TCGA-SO-A8JP-01A-11D-A435-10	87757708	162865128	80334245	9	6549											
DUSP19	142679	mdanderson.org	37	chr2	183960356	183960356	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggcaaagaaagcaataaGtgtgacagaatacaggagaa	13	4	0	4	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_080876	exon4	c.G624T	p.K208N	CAATAAGTGTGAC		89	4	0.04	77	0	0				16	0	0				T	183960356	G	T	183960356	3	4	95	1	0	0	0	0	1	0	0	0	4844	1020	36	3	638	3	DUSP19	2	183960356	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	21095228	183960356	59239017	10	6550											
TTLL4	9654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	219603651	219603651	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atacagtcttctgtaccaagCgtatcagcattcacctcctt	5	13	4	0	rs200872563	by1000genomes	TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_014640	exon3	c.C1252T	p.R418C	ACCAAGCGTATCA		147	6	0.04	99	0	0	0			149	10	0.07				T	219603651	C	T	219603651	3	4	95	1	0	0	0	0	1	0	0	0	16790	768	27	1	1254	1	TTLL4	2	219603651	Missense_Mutation	SNP	C	TCGA-SO-A8JP-01A-11D-A435-10	35643295	219603651	23595722	11	6551											
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	225370731	225370731	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagaggtattcaggagacCtggagttgaggttgagaaaa	15	3	1	4	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001257198	exon8	c.G1166T	p.R389M	GGAGACCTGGAGT		329	138	0.42	241	0	0				192	89	0.46				A	225370731	C	A	225370731	3	1	95	1	0	0	0	0	1	0	0	0	4079	681	24	3	1194	3	CUL3	2	225370731	Missense_Mutation	SNP	C	TCGA-SO-A8JP-01A-11D-A435-10	5767080	225370731	17828642	12	6552											
IQCA1	79781	broad.mit.edu	37	chr2	237327853	237327855	+	In_Frame_Del	DEL	TTC	TTC	-													tcttgggttgtttttcctttTtcttcttcttctttttgttt					novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	TTC	TTC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	IQCA1	NM_001270585	exon8	c.1092_1094del	p.364_365del	TCCTTTTTCTTCT		785	7	0.01	619	0	0		170		4	0	0				-	237327855	TTC	-	237327853	7	5	95	1	0	1	0	1	0	0	0	0	7845	1841	64	0	1443	0	IQCA1	2	237327853	In_Frame_Del	DEL	TTC	TCGA-SO-A8JP-01A-11D-A435-10	11957122	237327853	5871520	13	6553											
TATDN2	9797	mdanderson.org	37	chr3	10318068	10318068	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgagagacagctgcagctGgctgtgtctctaaagaagcc	12	9	1	3	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_014760	exon5	c.G1857T	p.L619L	GCAGCTGGCTGTG		49	3	0.06	48	0	0				78	0	0				T	10318068	G	T	10318068	2	4	95	1	0	0	0	0	0	0	0	1	15648	1335	47	3		3	TATDN2	3	10318068	Silent	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10		10318068	187704362	14	6554											
ZNF619	285267	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	40519494	40519494	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccagacagtgtggttccaGgtgagcagagctttctttca	11	10	2	3	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001145083	exon2	c.G46T	p.A16S	GTTCCAGGTGAGC		90	5	0.06	106	0	0				0	0					T	40519494	G	T	40519494	3	4	95	1	0	0	0	0	1	0	0	0	18099	1014	35	3	48	3	ZNF619	3	40519494	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	30201426	40519494	157502936	15	6555											
ABTB1	80325	mdanderson.org	37	chr3	127396684	127396684	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	acatgtacagcgaccacactGaggtgggggctcaggcagag	15	10	1	2	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_172027	exon10	c.G1027T	p.E343X	CACACTGAGGTGG		45	3	0.07	34	0	0				72	0	0				T	127396684	G	T	127396684	4	4	95	1	0	0	0	0	0	1	0	0	102	1291	45	3	1065	3	ABTB1	3	127396684	Nonsense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	86877190	127396684	70625746	16	6556											
DNAJC13	23317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	132224196	132224196	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agtccatatttgatatggaaCaattctacaagagcagaatt	7	6	1	3	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_015268	exon42	c.C4935G	p.N1645K	ATGGAACAATTCT		534	219	0.41	580	0	0				133	56	0.42				G	132224196	C	G	132224196	3	3	95	1	0	0	0	0	1	0	0	0	4659	477	17	5	5097	5	DNAJC13	3	132224196	Missense_Mutation	SNP	C	TCGA-SO-A8JP-01A-11D-A435-10	4827512	132224196	65798234	17	6557											
NAALADL2	254827	mdanderson.org	37	chr3	175473106	175473106	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	agatgcgacctgctaatgatCccaaggagagagcacccatc	10	12	0	3	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_207015	exon13	c.C2089A	p.P697T	AATGATCCCAAGG		63	4	0.06	76	0	0				0	0					A	175473106	C	A	175473106	3	1	95	1	0	0	0	0	1	0	0	0	10177	855	30	3	2139	3	NAALADL2	3	175473106	Missense_Mutation	SNP	C	TCGA-SO-A8JP-01A-11D-A435-10	43248910	175473106	22549324	18	6558											
FGFR3	2261	mdanderson.org	37	chr4	1803151	1803151	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagctgctggccgtgccggCcgccaacaccgtccgcttcc	12	18	0	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_022965	exon5	c.C503T	p.A168V	TGCCGGCCGCCAA		20	3	0.15	60	0	0				438	0	0				T	1803151	C	T	1803151	3	4	95	1	0	0	0	0	1	0	0	0	5899	739	26	2	517	2	FGFR3	4	1803151	Missense_Mutation	SNP	C	TCGA-SO-A8JP-01A-11D-A435-10		1803151	189351125	19	6559											
QRFPR	84109	broad.mit.edu	37	chr4	122261656	122261656	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tattgccacttcattttaaaAggatgcacaagtccctggtg	8	9	1	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	QRFPR	NM_198179	exon2	c.T450C	p.P150P	TTTAAAAGGATGC		79	3	0.04	121	0	0		65		3	0	0				G	122261656	A	G	122261656	2	3	95	1	0	0	0	0	0	0	0	1	12929	59	3	4		4	QRFPR	4	122261656	Silent	SNP	A	TCGA-SO-A8JP-01A-11D-A435-10	120458505	122261656	68892620	20	6560											
FBN2	2201	broad.mit.edu	37	chr5	127648441	127648441	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgttgcaagacagactcccAtctcctcgaggtccaaactt	8	13	1	2	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	FBN2	NM_001999	exon37	c.T4764C	p.D1588D	ACTCCCATCTCCT		105	3	0.03	150	0	0		858		0	0					G	127648441	A	G	127648441	2	3	95	1	0	0	0	0	0	0	0	1	5735	214	8	4		4	FBN2	5	127648441	Silent	SNP	A	TCGA-SO-A8JP-01A-11D-A435-10		127648441	53266819	21	6561											
PURA	5813	mdanderson.org	37	chr5	139494333	139494333	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acgcagggccagaccattgcGctgcccgcgcaggggctcat	14	15	1	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	PURA,NS,carcinoma,+1,1	PURA	NM_005859	exon1	c.G567A	p.A189A	CATTGCGCTGCCC		35	3	0.09	64	0	0		1	1	35	0	0				A	139494333	G	A	139494333	2	1	95	1	0	0	0	0	0	0	0	1	12878	1074	38	1		1	PURA	5	139494333	Silent	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	11845892	139494333	41420927	22	6562											
SLC4A9	83697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	139741434	139741434	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cttctgacaatgaggaagccCccctgagggaacaggtttgt	12	10	1	3	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001258428	exon4	c.C619A	p.P207T	GAAGCCCCCCTGA		167	22	0.13	288	0	0				0	0					A	139741434	C	A	139741434	3	1	95	1	0	0	0	0	1	0	0	0	14714	623	22	3	561	3	SLC4A9	5	139741434	Missense_Mutation	SNP	C	TCGA-SO-A8JP-01A-11D-A435-10	247101	139741434	41173826	23	6563											
GALNT10	55568	mdanderson.org	37	chr5	153709200	153709200	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catccccttccacaacgaggGctggtcctccctcctccgca	7	20	0	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_198321	exon4	c.G470T	p.G157V	ACGAGGGCTGGTC		80	4	0.05	129	0	0				13	0	0				T	153709200	G	T	153709200	3	4	95	1	0	0	0	0	1	0	0	0	6247	1203	42	2	484	2	GALNT10	5	153709200	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	13967766	153709200	27206060	24	6564											
RAB24	53917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	176729427	176729427	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agtcctggacgtcgtggaagTccacacgtcgacgcctccgg	13	14	0	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001031677	exon5	c.A404C	p.D135A	TGGAAGTCCACAC		57	4	0.07	78	0	0				46	6	0.13				G	176729427	T	G	176729427	3	3	95	1	0	0	0	0	1	0	0	0	12962	1667	58	4	223	4	RAB24	5	176729427	Missense_Mutation	SNP	T	TCGA-SO-A8JP-01A-11D-A435-10	23020227	176729427	4185833	25	6565											
MGAT4B	11282	ucsc.edu	37	chr5	179226299	179226299	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcaggttggctttctgccgGtcacagtgcttctgtggagg	15	10	3	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	MGAT4B	NM_054013	exon9	c.C1098A	p.D366E	CTGCCGGTCACAG		42	4	0.1	60	0	0		41		216	0	0				T	179226299	G	T	179226299	3	4	95	1	0	0	0	0	1	0	0	0	9595	1252	44	3	617	3	MGAT4B	5	179226299	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	2496872	179226299	1688961	26	6566											
DPCR1	135656	hgsc.bcm.edu	37	chr6	30917807	30917807	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcagagcctacagaacaCggagaaaggaccccactggc	11	13	1	3	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_080870	exon2	c.C1566T	p.H522H	AGAACACGGAGAA		74	6	0.08	88	0	0				0	0					T	30917807	C	T	30917807	2	4	95	1	0	0	0	0	0	0	0	1	4739	535	19	1		1	DPCR1	6	30917807	Silent	SNP	C	TCGA-SO-A8JP-01A-11D-A435-10		30917807	140197260	27	6567											
LY6G5B	58496	broad.mit.edu	37	chr6	31639910	31639910	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccccaatttccatgctgggAcggagcctgatggcctggac	12	13	0	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	LY6G5B	NM_021221	exon3	c.A457G	p.T153A	GCTGGGACGGAGC		176	5	0.03	203	1	0.0049261084		8		69	0	0				G	31639910	A	G	31639910	3	3	95	1	0	0	0	0	1	0	0	0	9137	275	10	4	467	4	LY6G5B	6	31639910	Missense_Mutation	SNP	A	TCGA-SO-A8JP-01A-11D-A435-10	722103	31639910	139475157	28	6568											
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	66094357	66094357	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agtttacagtggtcaattgcTttctcacagtttttttcagt	7	7	3	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001142801	exon8	c.A1221T	p.K407N	AATTGCTTTCTCA		85	30	0.35	81	0	0				0	0					A	66094357	T	A	66094357	3	1	95	1	0	0	0	0	1	0	0	0	5360	1606	56	5	8319	5	EYS	6	66094357	Missense_Mutation	SNP	T	TCGA-SO-A8JP-01A-11D-A435-10	34454447	66094357	105020710	29	6569											
TMEM200A	114801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	130762743	130762743	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acatccttgcatttgctctcGtcacactcaaagtccttgga	6	13	3	0	rs141571184	alternate_allele	TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001258277	exon3	c.G1176T	p.S392S	GCTCTCGTCACAC		63	20	0.32	65	0	0				4	2	0.5				T	130762743	G	T	130762743	2	4	95	1	0	0	0	0	0	0	0	1	16182	1132	40	1		1	TMEM200A	6	130762743	Silent	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	64668386	130762743	40352324	30	6570											
PLEKHA8	84725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr7	30129789	30129789	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaatccaacagaaaacactTgacaccaaaacataccctga	4	12	0	3	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_032639	exon13	c.T1321G	p.X441G	AACACTTGACACC		332	38	0.11	249	0	0				2	1	0.5				G	30129789	T	G	30129789	3	3	95	1	0	0	0	0	1	0	0	0	12109	1825	63	4	1371	4	PLEKHA8	7	30129789	Missense_Mutation	SNP	T	TCGA-SO-A8JP-01A-11D-A435-10		30129789	129008874	31	6571											
ARHGEF5	7984	broad.mit.edu	37	chr7	144062343	144062343	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcccccaaagtccagggggAggagcaggagcactcgggga	17	11	0	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	ARHGEF5	NM_005435	exon2	c.A2581G	p.R861G	AGGGGGAGGAGCA		567	6	0.01	563	2	0.0035523979		73		39	0	0				G	144062343	A	G	144062343	3	3	95	1	0	0	0	0	1	0	0	0	906	295	11	4	2583	4	ARHGEF5	7	144062343	Missense_Mutation	SNP	A	TCGA-SO-A8JP-01A-11D-A435-10	113932554	144062343	15076320	32	6572											
DLC1	10395	broad.mit.edu	37	chr8	12957624	12957624	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgactggctgctgctgctgCtggtctgcgtggagttggaa	16	10	1	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	DLC1,bladder,carcinoma,0,3	DLC1	NM_182643	exon9	c.G2222C	p.S741T	CTGCTGCTGGTCT		89	4	0.04	76	0	0		411	3	18	0	0				G	12957624	C	G	12957624	3	3	95	1	0	0	0	0	1	0	0	0	4578	797	28	5	2404	5	DLC1	8	12957624	Missense_Mutation	SNP	C	TCGA-SO-A8JP-01A-11D-A435-10		12957624	133406398	33	6573											
CA8	767	broad.mit.edu	37	chr8	61144876	61144876	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaatgatggcgattccgtgCggcttccccacagcctcatc	10	15	1	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	CA8	NM_004056	exon4	c.G480A	p.P160P	TCCGTGCGGCTTC		161	4	0.02	107	0	0		31		8	0	0				T	61144876	C	T	61144876	2	4	95	1	0	0	0	0	0	0	0	1	2541	755	27	1		1	CA8	8	61144876	Silent	SNP	C	TCGA-SO-A8JP-01A-11D-A435-10	48187252	61144876	85219146	34	6574											
PTPRD	5789	mdanderson.org	37	chr9	8376014	8376014	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaagctagaaaaggtgtaGggtgttctggaacaccatga	13	5	1	3	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_002839	exon39	c.C4583A	p.P1528H	GGTGTAGGGTGTT		119	5	0.04	100	0	0				1	0	0				T	8376014	G	T	8376014	3	4	95	1	0	0	0	0	1	0	0	0	12850	1000	35	3	1187	3	PTPRD	9	8376014	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10		8376014	132837417	35	6575											
ALDH1A1	216	mdanderson.org	37	chr9	75543822	75543822	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acttaccaattggtattgtaCggccctggatcttgtcagcc	9	11	2	0	rs149236405		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_000689	exon4	c.G428A	p.R143H	ATTGTACGGCCCT		91	4	0.04	121	1	0.0082644628	0			15	0	0				T	75543822	C	T	75543822	3	4	95	1	0	0	0	0	1	0	0	0	487	536	19	1	1117	1	ALDH1A1	9	75543822	Missense_Mutation	SNP	C	TCGA-SO-A8JP-01A-11D-A435-10	67167808	75543822	65669609	36	6576											
PHF2	5253	broad.mit.edu	37	chr9	96408040	96408040	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggctgtcccggcccccacGttctatgtcagtgacgtcga	11	15	2	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	PHF2	NM_005392	exon4	c.G429T	p.T143T	CCCCACGTTCTAT		57	3	0.05	79	0	0		113		69	1	0.01				T	96408040	G	T	96408040	2	4	95	1	0	0	0	0	0	0	0	1	11877	1132	40	1		1	PHF2	9	96408040	Silent	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	20864218	96408040	44805391	37	6577											
NUP188	23511	mdanderson.org	37	chr9	131764184	131764184	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccacagcagtggctggaGctggcatcacccagagcatt	13	12	1	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_015354	exon36	c.G4066T	p.A1356S	GCTGGAGCTGGCA		43	3	0.07	87	0	0				139	1	0.01				T	131764184	G	T	131764184	3	4	95	1	0	0	0	0	1	0	0	0	10805	971	34	2	4208	2	NUP188	9	131764184	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	35356144	131764184	9449247	38	6578											
MED27	9442	bcgsc.ca	37	chr9	134814839	134814839	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaaacatcctgtcaatgcGgctgatcacatcatcaacat	7	11	4	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	MED27	NM_001253881	exon4	c.C502T	p.R168C	CAATGCGGCTGAT		43	4	0.09	52	0	0		37		24	0	0				A	134814839	G	A	134814839	3	1	95	1	0	0	0	0	1	0	0	0	9494	1116	39	1	453	1	MED27	9	134814839	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	3050655	134814839	6398592	39	6579											
COL5A1	1289	mdanderson.org	37	chr9	137696858	137696858	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcctccctgggaaagatgGccctccaggattacgtggtt	13	11	0	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_000093	exon40	c.G3152T	p.G1051V	AAGATGGCCCTCC		67	4	0.06	88	0	0				170	0	0				T	137696858	G	T	137696858	3	4	95	1	0	0	0	0	1	0	0	0	3719	1203	42	2	3310	2	COL5A1	9	137696858	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	2882019	137696858	3516573	40	6580											
TUBB8	347688	broad.mit.edu	37	chr10	93106	93106	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatgttgctctcggcctcgGtgaattccatctcatccatg	8	13	3	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	TUBB8	NM_177987	exon4	c.C1226T	p.T409I	GCCTCGGTGAATT		52	3	0.06	85	0	0		62		63	0	0				A	93106	G	A	93106	3	1	95	1	0	0	0	0	1	0	0	0	16822	1261	44	3	112	3	TUBB8	10	93106	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10		93106	135441641	41	6581											
ZNF438	220929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	31137859	31137859	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atccatttctgaacacggagCtgggcttaggggaagagctg	14	8	1	2	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_182755	exon7	c.G1475A	p.S492N	ACGGAGCTGGGCT		239	35	0.15	246	0	0				32	1	0.03				T	31137859	C	T	31137859	3	4	95	1	0	0	0	0	1	0	0	0	17966	797	28	2	1019	2	ZNF438	10	31137859	Missense_Mutation	SNP	C	TCGA-SO-A8JP-01A-11D-A435-10	31044753	31137859	104396888	42	6582											
MMRN2	79812	mdanderson.org	37	chr10	88704996	88704996	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ttcctggtggctgtcaccagGatctgcaggctcagggattg	14	10	3	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_024756	exon4	c.C430A	p.P144T	CACCAGGATCTGC		46	3	0.07	66	0	0				19	0	0				T	88704996	G	T	88704996	3	4	95	1	0	0	0	0	1	0	0	0	9719	1174	41	3	2435	3	MMRN2	10	88704996	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	57567137	88704996	46829751	43	6583											
ANKRD1	27063	mdanderson.org	37	chr10	92675380	92675380	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcagtctcaccgcatcatGcaacggggtatctccttcct	8	14	4	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_014391	exon8	c.C769A	p.H257N	CATCATGCAACGG		53	3	0.06	74	0	0				0	0					T	92675380	G	T	92675380	3	4	95	1	0	0	0	0	1	0	0	0	633	1319	46	2	198	2	ANKRD1	10	92675380	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	3970384	92675380	42859367	44	6584											
HSPA12A	259217	bcgsc.ca;mdanderson.org	37	chr10	118458220	118458220	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgactttcttgccatttgCtgccgtcaggtctgtatcca	8	11	3	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	HSPA12A	NM_025015	exon5	c.G472A	p.A158T	CATTTGCTGCCGT		72	5	0.07	80	0	0		81		8	0	0				T	118458220	C	T	118458220	3	4	95	1	0	0	0	0	1	0	0	0	7446	797	28	2	1587	2	HSPA12A	10	118458220	Missense_Mutation	SNP	C	TCGA-SO-A8JP-01A-11D-A435-10	25782840	118458220	17076527	45	6585											
GPR26	2849	mdanderson.org	37	chr10	125426014	125426014	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctggtgctgctctgcctgCtgcacagcgcggacatccgc	13	16	1	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_153442	exon1	c.C91T	p.L31L	TGCCTGCTGCACA		37	3	0.08	36	0	0				0	0					T	125426014	C	T	125426014	2	4	95	1	0	0	0	0	0	0	0	1	6723	796	28	2		2	GPR26	10	125426014	Silent	SNP	C	TCGA-SO-A8JP-01A-11D-A435-10	6967794	125426014	10108733	46	6586											
CTBP2	1488	mdanderson.org	37	chr10	126715930	126715930	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtagctggggaccggccgGctgactcctgggtcccgata	15	14	0	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	CTBP2,caecum,carcinoma,0,1	CTBP2	NM_022802	exon1	c.C399A	p.S133R	CGGCCGGCTGACT		30	3	0.1	53	0	0		0	1	1	0	0				T	126715930	G	T	126715930	3	4	95	1	0	0	0	0	1	0	0	0	4022	1194	42	2	2594	2	CTBP2	10	126715930	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	1289916	126715930	8818817	47	6587											
DHX32	55760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	127526837	127526837	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tcagaaatgctgaatttatgGaagaggacccactctggcat	10	8	2	3	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_018180	exon10	c.C2001T	p.F667F	TTTATGGAAGAGG		72	28	0.39	71	0	0				79	39	0.49				A	127526837	G	A	127526837	2	1	95	1	0	0	0	0	0	0	0	1	4533	1165	41	3		3	DHX32	10	127526837	Silent	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	810907	127526837	8007910	48	6588											
MUC2	4583	mdanderson.org	37	chr11	1078504	1078504	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ccgaggccttcgcggactgtCaggacctggtgccgctggag	16	13	1	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_002457	exon6	c.C712G	p.Q238E	GACTGTCAGGACC		24	3	0.13	20	0	0				0	0					G	1078504	C	G	1078504	3	3	95	1	0	0	0	0	1	0	0	0	10022	827	29	5	734	5	MUC2	11	1078504	Missense_Mutation	SNP	C	TCGA-SO-A8JP-01A-11D-A435-10		1078504	133928012	49	6589											
TSG101	7251	broad.mit.edu	37	chr11	18505466	18505466	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttccagtttctggtgacccTttttcaggtcttcttctgtt	7	11	5	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	TSG101,NS,carcinoma,0,1	TSG101	NM_006292	exon8	c.A794G	p.K265R	TGACCCTTTTTCA		120	3	0.03	105	2	0.019047619		43	1	581	0	0				C	18505466	T	C	18505466	3	2	95	1	0	0	0	0	1	0	0	0	16676	1609	56	4	390	4	TSG101	11	18505466	Missense_Mutation	SNP	T	TCGA-SO-A8JP-01A-11D-A435-10	17426962	18505466	116501050	50	6590											
FEN1	2237	mdanderson.org	37	chr11	61563042	61563042	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgatgggcatgttctaccGcaccattcgcatgatggaga	11	11	1	3	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_004111	exon2	c.G209T	p.R70L	TCTACCGCACCAT		41	3	0.07	55	0	0				221	0	0				T	61563042	G	T	61563042	3	4	95	1	0	0	0	0	1	0	0	0	5844	1087	38	1	211	1	FEN1	11	61563042	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	43057576	61563042	73443474	51	6591											
TBX10	347853	ucsc.edu;bcgsc.ca	37	chr11	67399115	67399115	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccccaggcacaccacagtGggggacaggagccccagccc	14	17	0	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	TBX10	NM_005995	exon8	c.C1119A	p.P373P	CACAGTGGGGGAC		25	4	0.16	22	0	0		25		0	0					T	67399115	G	T	67399115	2	4	95	1	0	0	0	0	0	0	0	1	15710	1335	47	3		3	TBX10	11	67399115	Silent	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	5836073	67399115	67607401	52	6592											
INPPL1	3636	mdanderson.org	37	chr11	71942580	71942580	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaatatcaaggtggcagtGctggtcaagccagagcacga	14	8	2	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001567	exon13	c.G1536T	p.V512V	GGCAGTGCTGGTC		42	3	0.07	55	0	0				160	0	0				T	71942580	G	T	71942580	2	4	95	1	0	0	0	0	0	0	0	1	7804	1306	46	2		2	INPPL1	11	71942580	Silent	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	4543465	71942580	63063936	53	6593											
SIDT2	51092	bcgsc.ca	37	chr11	117064645	117064647	+	In_Frame_Del	DEL	TCT	TCT	-													cgtggtctggggcttcgcgcTcttcttcttcttccagggac					novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	TCT	TCT					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	SIDT2	NM_001040455	exon24	c.2288_2290del	p.763_764del	TCGCGCTCTTCTT		33	5	0.15	100	0	0		82		82	0	0				-	117064647	TCT	-	117064645	7	5	95	1	0	1	0	1	0	0	0	0	14357	1551	54	0	2382	0	SIDT2	11	117064645	In_Frame_Del	DEL	TCT	TCGA-SO-A8JP-01A-11D-A435-10	45122065	117064645	17941871	54	6594											
NCAPD3	23310	mdanderson.org	37	chr11	134063930	134063930	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccataaggagttcagtaagaGactggagggcctgcttccgg	14	9	1	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_015261	exon15	c.C1805A	p.S602Y	GTAAGAGACTGGA		47	3	0.06	84	0	0				32	0	0				T	134063930	G	T	134063930	3	4	95	1	0	0	0	0	1	0	0	0	10252	942	33	3	2775	3	NCAPD3	11	134063930	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	16999285	134063930	942586	55	6595											
PLCZ1	89869	mdanderson.org	37	chr12	18837085	18837085	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgttcatgcatagaagtgGcaaagtatattgcccaagaa	9	6	1	2	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_033123	exon14	c.C1720A	p.P574T	GAAGTGGCAAAGT		128	5	0.04	79	0	0				0	0					T	18837085	G	T	18837085	3	4	95	1	0	0	0	0	1	0	0	0	12091	1203	42	2	114	2	PLCZ1	12	18837085	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10		18837085	115014810	56	6596											
CAPZA3	93661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	18891950	18891950	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aattacaggagttatccaatGaagccctgagaaaaattcta	7	7	1	2	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_033328	exon1	c.G748A	p.E250K	TCCAATGAAGCCC		58	18	0.31	41	0	0				0	0					A	18891950	G	A	18891950	3	1	95	1	0	0	0	0	1	0	0	0	2660	1291	45	3	750	3	CAPZA3	12	18891950	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	54865	18891950	114959945	57	6597											
KIF21A	55605	broad.mit.edu	37	chr12	39735383	39735383	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcctcctcctcctcctcCtcttcttcatcctcatgatc	1	20	5	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	KIF21A,NS,carcinoma,0,2	KIF21A	NM_001173464	exon14	c.G1845A	p.E615E	CTCCTCCTCTTCT		144	3	0.02	128	0	0		238	2	27	0	0				T	39735383	C	T	39735383	2	4	95	1	0	0	0	0	0	0	0	1	8329	680	24	3		3	KIF21A	12	39735383	Silent	SNP	C	TCGA-SO-A8JP-01A-11D-A435-10	20843433	39735383	94116512	58	6598											
ESYT1	23344	broad.mit.edu	37	chr12	56532024	56532024	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acttgcgcctggagcgtctcAccccccgtcccactgctgct	9	19	1	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	ESYT1	NM_001184796	exon21	c.A2335C	p.T779P	CGTCTCACCCCCC		132	9	0.07	120	1	0.0083333333		84		144	6	0.04				C	56532024	A	C	56532024	3	2	95	1	0	0	0	0	1	0	0	0	5292	159	6	4	2417	4	ESYT1	12	56532024	Missense_Mutation	SNP	A	TCGA-SO-A8JP-01A-11D-A435-10	16796641	56532024	77319871	59	6599											
KIAA1033	23325	mdanderson.org	37	chr12	105505042	105505042	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgatcctatagcattaaaGgtttgatttgattttttaaa	6	4	0	3	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_015275	exon2	c.G201T	p.K67N	ATTAAAGGTTTGA		46	3	0.07	43	0	0				28	0	0				T	105505042	G	T	105505042	3	4	95	1	0	0	0	0	1	0	0	0	8247	1014	35	3	207	3	KIAA1033	12	105505042	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	48973018	105505042	28346853	60	6600											
TMEM132D	121256	broad.mit.edu	37	chr12	130184606	130184606	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctcgcgtcttccctgacGcagtcccctctctcaccccc	5	23	3	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	TMEM132D,NS,carcinoma,0,1	TMEM132D	NM_133448	exon2	c.C717T	p.C239C	CCTGACGCAGTCC		86	4	0.05	110	0	0		299	1	10	3	0.3				A	130184606	G	A	130184606	2	1	95	1	0	0	0	0	0	0	0	1	16106	1079	38	1		1	TMEM132D	12	130184606	Silent	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	24679564	130184606	3667289	61	6601											
TPTE2	93492	bcgsc.ca	37	chr13	20056686	20056686	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttggaaagtcgttctaacaTactttagccaccaaaaaaaa	5	9	1	0	rs201542496		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	TPTE2	NM_199254	exon5	c.A121G	p.M41V	CTAACATACTTTA		459	15	0.03	575	6	0.0104347826		225		3	0	0				C	20056686	T	C	20056686	3	2	95	1	0	0	0	0	1	0	0	0	16491	1420	49	4	1515	4	TPTE2	13	20056686	Missense_Mutation	SNP	T	TCGA-SO-A8JP-01A-11D-A435-10		20056686	95113192	62	6602											
CBLN3	643866	broad.mit.edu	37	chr14	24898130	24898130	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcacagaccaccaggcacTccccctccagcaggacgggc	10	19	1	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	CBLN3	NM_001039771	exon1	c.A131G	p.E44G	AGGCACTCCCCCT		140	5	0.04	134	0	0		21		3	0	0				C	24898130	T	C	24898130	3	2	95	1	0	0	0	0	1	0	0	0	2724	1551	54	4	498	4	CBLN3	14	24898130	Missense_Mutation	SNP	T	TCGA-SO-A8JP-01A-11D-A435-10		24898130	82451410	63	6603											
TXNDC16	57544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	52978069	52978069	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtccaagactagtttacaAtgaaaaaagtagagatgtgc	9	5	0	3	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_020784	exon9	c.T645A	p.H215Q	TTTACAATGAAAA		249	80	0.32	275	0	0				5	2	0.4				T	52978069	A	T	52978069	3	4	95	1	0	0	0	0	1	0	0	0	16856	98	4	5	1884	5	TXNDC16	14	52978069	Missense_Mutation	SNP	A	TCGA-SO-A8JP-01A-11D-A435-10	28079939	52978069	54371471	64	6604											
TTC7B	145567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	91252656	91252656	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcttcgactccccgaggagAagctctgccatgtcatctac	9	14	3	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001010854	exon2	c.T138C	p.L46L	GAGGAGAAGCTCT		66	12	0.18	50	0	0				39	6	0.15				G	91252656	A	G	91252656	2	3	95	1	0	0	0	0	0	0	0	1	16774	233	9	4		4	TTC7B	14	91252656	Silent	SNP	A	TCGA-SO-A8JP-01A-11D-A435-10	38274587	91252656	16096884	65	6605											
JAG2	3714	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr14	105609508	105609508	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcacaggcaccagcagacCtggggaccggggagaagagc	16	12	0	3	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_002226	exon27	c.3242-1G>A	.	GCAGACCTGGGGA		23	11	0.48	14	0	0				42	33	0.79				T	105609508	C	T	105609508	5	4	95	1	0	0	0	0	0	0	1	0	7978	695	24	3	479	3	JAG2	14	105609508	Splice_Site	SNP	C	TCGA-SO-A8JP-01A-11D-A435-10	14356852	105609508	1740032	66	6606											
MAN2C1	4123	broad.mit.edu;mdanderson.org	37	chr15	75650586	75650586	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtattgtagtgggtaggtcGctgcaggtgcccaaactgga	16	7	0	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	MAN2C1	NM_001256494	exon21	c.C2554A	p.R852R	TAGGTCGCTGCAG		116	5	0.04	104	0	0		76		57	0	0				T	75650586	G	T	75650586	2	4	95	1	0	0	0	0	0	0	0	1	9267	1095	38	1		1	MAN2C1	15	75650586	Silent	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10		75650586	26880806	67	6607											
MESDC1	59274	mdanderson.org	37	chr15	81295326	81295326	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcgcgaggtgaaggtggcGcccagtgagctggcgcgcag	20	10	0	2	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_022566	exon1	c.G714T	p.A238A	GGTGGCGCCCAGT		11	2	0.18	11	0	0				52	0	0				T	81295326	G	T	81295326	2	4	95	1	0	0	0	0	0	0	0	1	9529	1074	38	1		1	MESDC1	15	81295326	Silent	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	5644740	81295326	21236066	68	6608											
MEX3B	84206	mdanderson.org	37	chr15	82338001	82338001	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgctgccgccgccgccgcCgccgctgccgttgcgctcca	13	21	0	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_032246	exon1	c.G46A	p.G16S	CGCCGCCGCCGCT		21	3	0.14	25	0	0				15	0	0				T	82338001	C	T	82338001	3	4	95	1	0	0	0	0	1	0	0	0	9559	652	23	1	1671	1	MEX3B	15	82338001	Missense_Mutation	SNP	C	TCGA-SO-A8JP-01A-11D-A435-10	1042675	82338001	20193391	69	6609											
ATF7IP2	80063	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	10534303	10534303	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaccaaacatgttatccaGtaatggagcctctaaggttt	8	8	1	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_024997	exon6	c.G1178A	p.S393N	TATCCAGTAATGG		344	24	0.07	348	0	0				5	1	0.2				A	10534303	G	A	10534303	3	1	95	1	0	0	0	0	1	0	0	0	1087	1029	36	3	1192	3	ATF7IP2	16	10534303	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10		10534303	79820450	70	6610											
NOMO1	23420	bcgsc.ca	37	chr16	14973920	14973920	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tgatgaaggagttccggtttGagccatcctcacagatgatc	11	9	1	5	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	NOMO1	NM_014287	exon24	c.G2806C	p.E936Q	CGGTTTGAGCCAT		1181	300	0.25	1119	5	0.0044682752		60		103	20	0.19				C	14973920	G	C	14973920	3	2	95	1	0	0	0	0	1	0	0	0	10577	1291	45	5	2900	5	NOMO1	16	14973920	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	4439617	14973920	75380833	71	6611											
SH2B1	25970	broad.mit.edu	37	chr16	28877475	28877475	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgtctcccccgctgcccccAcccccgccccctagttggcg	8	24	1	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	SH2B1	NM_001145796	exon2	c.A60C	p.P20P	GCCCCCACCCCCG		55	15	0.27	51	3	0.0588235294		160		12	0	0				C	28877475	A	C	28877475	2	2	95	1	0	0	0	0	0	0	0	1	14280	146	6	4		4	SH2B1	16	28877475	Silent	SNP	A	TCGA-SO-A8JP-01A-11D-A435-10	13903555	28877475	61477278	72	6612											
CORO1A	11151	mdanderson.org	37	chr16	30198195	30198195	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgggagcccgtcgtcacccTggagggccacaccaagcgtg	15	15	1	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001193333	exon5	c.T380C	p.L127P	TCACCCTGGAGGG		42	3	0.07	39	1	0.0256410256				166	0	0				C	30198195	T	C	30198195	3	2	95	1	0	0	0	0	1	0	0	0	3776	1580	55	4	390	4	CORO1A	16	30198195	Missense_Mutation	SNP	T	TCGA-SO-A8JP-01A-11D-A435-10	1320720	30198195	60156558	73	6613											
TAF1C	9013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	84212696	84212698	+	In_Frame_Del	DEL	TGG	TGG	-													gtccctctggggtggtagctTggccatgtagtcacggagca					novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	TGG	TGG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	TAF1C	NM_005679	exon14	c.2460_2462del	p.820_821del	GTAGCTTGGCCAT		38	11	0.29	49	0	0		60		251	93	0.37				-	84212698	TGG	-	84212696	7	5	95	1	0	1	0	1	0	0	0	0	15577	1821	63	0	152	0	TAF1C	16	84212696	In_Frame_Del	DEL	TGG	TCGA-SO-A8JP-01A-11D-A435-10	54014501	84212696	6142057	74	6614											
CPNE7	27132	mdanderson.org	37	chr16	89655121	89655121	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gcctccaatggagacccgcgGaacagctgctccctgcacta	10	16	0	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_014427	exon12	c.G1191T	p.R397R	CCCGCGGAACAGC		39	3	0.08	38	0	0				0	0					T	89655121	G	T	89655121	2	4	95	1	0	0	0	0	0	0	0	1	3840	1161	41	3		3	CPNE7	16	89655121	Silent	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	5442425	89655121	699632	75	6615											
RTN4RL1	146760	mdanderson.org	37	chr17	1840603	1840603	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtggctgaggttgaccagGtccacgaagatgtcgtcctg	15	9	0	3	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_178568	exon2	c.C513A	p.D171E	GACCAGGTCCACG		40	4	0.1	41	0	0				19	1	0.05				T	1840603	G	T	1840603	3	4	95	1	0	0	0	0	1	0	0	0	13782	1252	44	3	816	3	RTN4RL1	17	1840603	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10		1840603	79354607	76	6616											
TNRC6C	57690	mdanderson.org	37	chr17	76047438	76047438	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aataccaccaccaccaccacCactaccacgagcaacaccac	2	21	0	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_018996	exon4	c.C2295T	p.T765T	CACCACCACTACC		42	3	0.07	58	0	0				52	0	0				T	76047438	C	T	76047438	2	4	95	1	0	0	0	0	0	0	0	1	16401	581	21	3		3	TNRC6C	17	76047438	Silent	SNP	C	TCGA-SO-A8JP-01A-11D-A435-10	74206835	76047438	5147772	77	6617											
AZI1	22994	broad.mit.edu	37	chr17	79174197	79174197	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgccgctgcacctggtgccGgtaccagcgctggatggtga	16	13	0	1	rs138379046	alternate_allele	TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	AZI1	NM_014984	exon8	c.C838A	p.R280R	GGTGCCGGTACCA		122	4	0.03	109	0	0		145		91	0	0				T	79174197	G	T	79174197	2	4	95	1	0	0	0	0	0	0	0	1	1238	1115	39	1		1	AZI1	17	79174197	Silent	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	3126759	79174197	2021013	78	6618											
FOXK2	3607	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	80478070	80478070	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccggagctgccgcccgcgcaGcccaggcccgacgccggcgg	16	20	0	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_004514	exon1	c.G306C	p.Q102H	CGCGCAGCCCAGG		130	29	0.22	45	0	0				31	5	0.16				C	80478070	G	C	80478070	3	2	95	1	0	0	0	0	1	0	0	0	6048	962	34	5	308	5	FOXK2	17	80478070	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	1303873	80478070	717140	79	6619											
MEX3C	51320	mdanderson.org	37	chr18	48703101	48703101	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agatggctgacttcctctgcGctgagtcttcatgttaccag	10	11	3	3	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_016626	exon2	c.C1600A	p.R534S	CTCTGCGCTGAGT		55	3	0.05	113	0	0				236	0	0				T	48703101	G	T	48703101	3	4	95	1	0	0	0	0	1	0	0	0	9560	1087	38	1	383	1	MEX3C	18	48703101	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10		48703101	29374147	80	6620											
DSEL	92126	mdanderson.org	37	chr18	65178556	65178556	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gccacaagtgagacaagaggGacactgcatttgatttggat	12	7	0	3	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_032160	exon2	c.C3320A	p.S1107Y	AAGAGGGACACTG		8	2	0.25	28	0	0				4	0	0				T	65178556	G	T	65178556	3	4	95	1	0	0	0	0	1	0	0	0	4801	1174	41	3	352	3	DSEL	18	65178556	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	16475455	65178556	12898692	81	6621											
MIER2	54531	mdanderson.org	37	chr19	308655	308655	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgctgccatccaggtcctGgtctgcgtccctgtggggag	15	13	1	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_017550	exon12	c.C1120A	p.Q374K	GGTCCTGGTCTGC		47	3	0.06	49	0	0				276	0	0				T	308655	G	T	308655	3	4	95	1	0	0	0	0	1	0	0	0	9628	1357	47	3	529	3	MIER2	19	308655	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10		308655	58820328	82	6622											
CACNA1A	773	bcgsc.ca	37	chr19	13443726	13443726	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgtcagtttcatcctcggcGaggatcacctcttctgaaga	9	13	5	2	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	CACNA1A	NM_001127222	exon9	c.C1212A	p.L404L	CTCGGCGAGGATC		48	4	0.08	41	0	0		715		1	0	0				T	13443726	G	T	13443726	2	4	95	1	0	0	0	0	0	0	0	1	2556	1045	37	1		1	CACNA1A	19	13443726	Silent	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	13135071	13443726	45685257	83	6623											
PODNL1	79883	mdanderson.org	37	chr19	14044048	14044048	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagcgtgtgcaggccccGcagcggccgcagagccccgg	17	16	0	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_024825	exon8	c.C1009T	p.R337W	GGCCCCGCAGCGG		10	2	0.2	16	0	0				3	0	0				A	14044048	G	A	14044048	3	1	95	1	0	0	0	0	1	0	0	0	12226	1086	38	1	533	1	PODNL1	19	14044048	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	600322	14044048	45084935	84	6624											
PAFAH1B3	5050	mdanderson.org	37	chr19	42806398	42806398	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcaccagggacatccagcGcccgtcgccctgtacgtcct	10	18	1	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_002573	exon1	c.C64A	p.R22S	TCCAGCGCCCGTC		50	3	0.06	62	0	0				435	3	0.01				T	42806398	G	T	42806398	3	4	95	1	0	0	0	0	1	0	0	0	11432	1087	38	1	651	1	PAFAH1B3	19	42806398	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	28762350	42806398	16322585	85	6625											
NKPD1	284353	mdanderson.org	37	chr19	45661943	45661943	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctgtaggcagtgaaggaGccacaggccgctggggcggg	20	9	0	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_198478	exon2	c.C507A	p.G169G	GAAGGAGCCACAG		19	2	0.11	19	0	0				5	0	0				T	45661943	G	T	45661943	2	4	95	1	0	0	0	0	0	0	0	1	10492	958	34	2		2	NKPD1	19	45661943	Silent	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	2855545	45661943	13467040	86	6626											
KLK10	5655	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr19	51518067	51518067	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatctggatcagttggagcGtatgactttattgatccagg	12	7	2	2	rs370110864	alternate_allele	TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	KLK10,NS,carcinoma,+1,1	KLK10	NM_145888	exon6	c.C820A	p.R274S	TGGAGCGTATGAC		64	4	0.06	73	0	0		1	1	5	0	0				T	51518067	G	T	51518067	3	4	95	1	0	0	0	0	1	0	0	0	8440	1145	40	1	14	1	KLK10	19	51518067	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	5856124	51518067	7610916	87	6627											
LILRB3	11025	mdanderson.org	37	chr19	54724044	54724044	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaggtgtggagggcggcccTgtgggtgggaggctggagcc	22	9	0	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_006864	exon7	c.A1290T	p.T430T	CGGCCCTGTGGGT		42	3	0.07	40	0	0				3	0	0				A	54724044	T	A	54724044	2	1	95	1	0	0	0	0	0	0	0	1	8831	1567	55	5		5	LILRB3	19	54724044	Silent	SNP	T	TCGA-SO-A8JP-01A-11D-A435-10	3205977	54724044	4404939	88	6628											
GATSL3	652968	mdanderson.org	37	chr22	30685382	30685382	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgggcgcgcaccggctgcgGcggggcaggaagagcagctt	19	13	0	1	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001037666	exon1	c.C105A	p.R35R	GCTGCGGCGGGGC		36	3	0.08	20	0	0				35	0	0				T	30685382	G	T	30685382	2	4	95	1	0	0	0	0	0	0	0	1	6304	1190	42	2		2	GATSL3	22	30685382	Silent	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10		30685382	20619184	89	6629											
ELFN2	114794	mdanderson.org	37	chr22	37770851	37770851	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccattccgacacttggcctGgagtacggtgatggcgttga	14	10	0	2	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_052906	exon3	c.C724A	p.Q242K	TGGCCTGGAGTAC		43	3	0.07	30	0	0				8	0	0				T	37770851	G	T	37770851	3	4	95	1	0	0	0	0	1	0	0	0	5086	1357	47	3	1742	3	ELFN2	22	37770851	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	7085469	37770851	13533715	90	6630											
FBLN1	2192	hgsc.bcm.edu;broad.mit.edu	37	chr22	45928977	45928977	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcagcagtgccgagacacGggtgacgaggtggtctgctc	16	10	1	2	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_006487	exon6	c.G579T	p.T193T	AGACACGGGTGAC		113	6	0.05	108	0	0				1125	0	0				T	45928977	G	T	45928977	2	4	95	1	0	0	0	0	0	0	0	1	5730	1103	39	1		1	FBLN1	22	45928977	Silent	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	8158126	45928977	5375589	91	6631											
TUBGCP6	85378	broad.mit.edu	37	chr22	50656423	50656423	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaagttggggtgctctgcAccccgcgggcccccaggggg	17	14	1	0	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	TUBGCP6	NM_020461	exon24	c.T5292G	p.G1764G	CTCTGCACCCCGC		44	13	0.3	55	8	0.1454545455		132		72	13	0.18				C	50656423	A	C	50656423	2	2	95	1	0	0	0	0	0	0	0	1	16831	146	6	4		4	TUBGCP6	22	50656423	Silent	SNP	A	TCGA-SO-A8JP-01A-11D-A435-10	4727446	50656423	648143	92	6632											
CDKL5	6792	broad.mit.edu	37	chrX	18622108	18622108	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgagtgtaggcctgccccGggctgacgaaggtctccctg	14	14	1	2	rs189400843	bycluster;by1000genomes;alternate_allele	TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	CDKL5	NM_003159	exon12	c.G1064T	p.R355L	TGCCCCGGGCTGA		257	4	0.02	222	1	0.0045045045		124		19	0	0				T	18622108	G	T	18622108	3	4	95	1	0	0	0	0	1	0	0	0	3179	1116	39	1	1106	1	CDKL5	23	18622108	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10		18622108	136648452	93	6633											
F8	2157	broad.mit.edu	37	chrX	154133089	154133089	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatagacacctgcttaccagGtcaacatcagagaaataagc	7	10	2	2	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	F8	NM_000132	exon16	c.C5583A	p.D1861E	TACCAGGTCAACA		122	4	0.03	98	0	0		646		16	0	0				T	154133089	G	T	154133089	3	4	95	1	0	0	0	0	1	0	0	0	5378	1252	44	3	1544	3	F8	23	154133089	Missense_Mutation	SNP	G	TCGA-SO-A8JP-01A-11D-A435-10	135510981	154133089	1137471	94	6634											
SCNN1D	6339	broad.mit.edu	37	chr1	1221416	1221416	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgcctcgttccgggagctGctcaccttcttctgcaccaa	8	18	3	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SCNN1D	NM_001130413	exon7	c.G669A	p.L223L	GGAGCTGCTCACC		100	3	0.03	110	0	0		60		0	0					A	1221416	G	A	1221416	2	1	96	1	0	0	0	0	0	0	0	1	13982	1306	46	2		2	SCNN1D	1	1221416	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10		1221416	248029205	1	6635											
SKI	6497	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	2235825	2235825	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gggtgcgcgtgccctgccctCggccgtccctgatgctgcgg	16	16	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SKI	NM_003036	exon5	c.C1568T	p.S523L	TGCCCTCGGCCGT		57	28	0.49	78	1	0.0128205128		33		24	13	0.54				T	2235825	C	T	2235825	3	4	96	1	0	0	0	0	1	0	0	0	14411	893	31	1	1586	1	SKI	1	2235825	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	1014409	2235825	247014796	2	6636											
PLOD1	5351	broad.mit.edu	37	chr1	12034807	12034808	+	Frame_Shift_Ins	INS	-	-	G													cgactcacgcattaccatgaINSggggctccccaccaccaggg					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PLOD1	NM_000302	exon19	c.2126_2127insG	p.E709fs	ACCATGAGGGGCT		327	7	0.02	283	0	0		75		375	0	0				G	12034808	-	G	12034807	7	5	96	1	0	1	1	0	0	0	0	0	12148	304	11	0	2200	0	PLOD1	1	12034807	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	9798982	12034807	237215814	3	6637											
TMEM82	388595	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	16069671	16069671	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccctccgggccgtgtccacGctgctgtccctgggcaaggt	13	16	0	0	rs138383534	bycluster;byfrequency;by1000genomes	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001013641	exon3	c.G318A	p.T106T	GTCCACGCTGCTG		38	8	0.21	24	0	0	0.003			0	0					A	16069671	G	A	16069671	2	1	96	1	0	0	0	0	0	0	0	1	16265	1074	38	1		1	TMEM82	1	16069671	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	4034864	16069671	233180950	4	6638											
FBLIM1	54751	broad.mit.edu	37	chr1	16091540	16091540	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcaccctggcacccccgcGccgcgatgtggccgtggcgg	14	17	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FBLIM1	NM_001024215	exon2	c.G62T	p.R21L	CCCCGCGCCGCGA		62	3	0.05	53	0	0		46		85	0	0				T	16091540	G	T	16091540	3	4	96	1	0	0	0	0	1	0	0	0	5729	1087	38	1	64	1	FBLIM1	1	16091540	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	21869	16091540	233159081	5	6639											
NBPF1	55672	broad.mit.edu	37	chr1	16907261	16907262	+	Frame_Shift_Ins	INS	-	-	T													gggagaatgtttacagcatcINSctgacattcatcatgagagg					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	.	.	.	.	CAGCATCCTGACA		1154	3	0	1116	0	0				0	0					T	16907262	-	T	16907261	7	5	96	1	0	1	1	0	0	0	0	0	10239	855	30	0	1910	0	NBPF1	1	16907261	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	815721	16907261	232343360	6	6640											
PADI6	353238	broad.mit.edu	37	chr1	17718621	17718621	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catggcagggagctgcagctGcagggttttgtggacacagt	16	8	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PADI6	NM_207421	exon9	c.G975A	p.L325L	GCAGCTGCAGGGT		290	4	0.01	273	1	0.0036630037		51		0	0					A	17718621	G	A	17718621	1	1	96	0	1	0	0	0	0	0	0	0	11427	1306	46	2		2	PADI6	1	17718621	RNA	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	811360	17718621	231532000	7	6641											
UBR4	23352	broad.mit.edu	37	chr1	19482779	19482779	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtaccttaacaaagtctgCggtgacaattgctaactcgg	9	10	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	UBR4	NM_020765	exon42	c.G6058A	p.A2020T	AGTCTGCGGTGAC		317	6	0.02	296	2	0.0067567568		415		1	0	0				T	19482779	C	T	19482779	3	4	96	1	0	0	0	0	1	0	0	0	16964	768	27	1	9753	1	UBR4	1	19482779	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	1764158	19482779	229767842	8	6642											
SLC30A2	7780	broad.mit.edu	37	chr1	26368222	26368222	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	accaggatcacatctctcagGatggtcaaggttgtccccag	10	12	4	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLC30A2	NM_001004434	exon6	c.C807A	p.I269I	TCTCAGGATGGTC		247	6	0.02	104	0	0		29		8	0	0				T	26368222	G	T	26368222	2	4	96	1	0	0	0	0	0	0	0	1	14609	1164	41	3		3	SLC30A2	1	26368222	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	6885443	26368222	222882399	9	6643											
FAM46B	115572	broad.mit.edu	37	chr1	27332836	27332836	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcacatcggtgctgggccGgggccggaagccccgcacca	16	16	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	FAM46B,NS,carcinoma,+1,1	FAM46B	NM_052943	exon2	c.C877A	p.R293R	TGGGCCGGGGCCG		161	3	0.02	76	0	0		44	1	484	0	0				T	27332836	G	T	27332836	2	4	96	1	0	0	0	0	0	0	0	1	5601	1115	39	1		1	FAM46B	1	27332836	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	964614	27332836	221917785	10	6644											
MECR	51102	broad.mit.edu	37	chr1	29522739	29522739	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tacgacgggctgcttggccaTccccccataggttaccatgg	11	14	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MECR	NM_016011	exon8	c.A862G	p.M288V	TGGCCATCCCCCC		391	8	0.02	206	2	0.0097087379		31		161	0	0				C	29522739	T	C	29522739	3	2	96	1	0	0	0	0	1	0	0	0	9473	1435	50	4	271	4	MECR	1	29522739	Missense_Mutation	SNP	T	TCGA-VF-A8A8-01A-11D-A435-10	2189903	29522739	219727882	11	6645											
MATN1	4146	broad.mit.edu	37	chr1	31194457	31194458	+	Frame_Shift_Ins	INS	-	-	G													atagttgaccatgcccacccINSgggtggcattgggccccacg					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MATN1	NM_002379	exon2	c.236_237insC	p.R79fs	CCCACCCGGGTGG		260	6	0.02	141	0	0		28		0	0					G	31194458	-	G	31194457	7	5	96	1	0	1	1	0	0	0	0	0	9382	652	23	0	1282	0	MATN1	1	31194457	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	1671718	31194457	218056164	12	6646											
KPNA6	23633	broad.mit.edu	37	chr1	32623874	32623874	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcccttatccagagcctaGtcctccaatagatgaagtta	6	12	1	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KPNA6	NM_012316	exon5	c.G338T	p.S113I	AGCCTAGTCCTCC		304	5	0.02	196	2	0.0102040816		34		20	0	0				T	32623874	G	T	32623874	3	4	96	1	0	0	0	0	1	0	0	0	8476	1029	36	3	356	3	KPNA6	1	32623874	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1429417	32623874	216626747	13	6647											
TSSK3	81629	broad.mit.edu	37	chr1	32829624	32829624	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cccacgatagcaaaaaaggtGatgtctggagcatgggtgtg	14	7	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TSSK3	NM_052841	exon2	c.G574T	p.D192Y	AAAGGTGATGTCT		245	7	0.03	157	2	0.0127388535		22		7	0	0				T	32829624	G	T	32829624	3	4	96	1	0	0	0	0	1	0	0	0	16730	1290	45	3	580	3	TSSK3	1	32829624	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	205750	32829624	216420997	14	6648											
YARS	8565	broad.mit.edu	37	chr1	33241605	33241605	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctaatgttcccccctttcaGcgatttacaggaaatggagc	9	11	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	YARS	NM_003680	exon13	c.C1564A	p.L522M	CTTTCAGCGATTT		233	4	0.02	144	0	0		34		1759	0	0				T	33241605	G	T	33241605	3	4	96	1	0	0	0	0	1	0	0	0	17526	962	34	2	26	2	YARS	1	33241605	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	411981	33241605	216009016	15	6649											
ZMYM1	79830	broad.mit.edu	37	chr1	35579584	35579584	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acatggccaggcctatgataGcaccactaatttgaagataa	8	9	0	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZMYM1	NM_024772	exon10	c.G2153T	p.S718I	ATGATAGCACCAC		664	6	0.01	370	1	0.0027027027		86		23	0	0				T	35579584	G	T	35579584	3	4	96	1	0	0	0	0	1	0	0	0	17756	971	34	2	2187	2	ZMYM1	1	35579584	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2337979	35579584	213671037	16	6650											
KIAA0319L	79932	broad.mit.edu	37	chr1	35944611	35944611	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaagaggcctggggggtaGgggtagcataactgtaggag	20	4	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KIAA0319L	NM_024874	exon4	c.C869A	p.P290H	GGGGTAGGGGTAG		222	4	0.02	114	0	0		156		5	0	0				T	35944611	G	T	35944611	3	4	96	1	0	0	0	0	1	0	0	0	8210	1000	35	3	2352	3	KIAA0319L	1	35944611	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	365027	35944611	213306010	17	6651											
DNALI1	7802	broad.mit.edu	37	chr1	38027269	38027269	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaccagaccctgtacgagaGcagcgtggcgtttggcatga	13	11	0	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DNALI1	NM_003462	exon4	c.G575T	p.S192I	ACGAGAGCAGCGT		249	4	0.02	142	0	0		25		58	0	0				T	38027269	G	T	38027269	3	4	96	1	0	0	0	0	1	0	0	0	4686	971	34	2	589	2	DNALI1	1	38027269	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2082658	38027269	211223352	18	6652											
FHL3	2275	broad.mit.edu	37	chr1	38465022	38465022	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	cagtaggggccgctgtctgtCtggatgtacttgcgtccata	13	10	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FHL3	NM_004468	exon2	c.G63T	p.Q21H	GTCTGTCTGGATG		225	3	0.01	143	0	0		9		63	0	0				A	38465022	C	A	38465022	3	1	96	1	0	0	0	0	1	0	0	0	5912	912	32	3	799	3	FHL3	1	38465022	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	437753	38465022	210785599	19	6653											
MACF1	23499	broad.mit.edu	37	chr1	39852903	39852903	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctcttgccagcacccagCagttccagcaaatgtttgat	8	13	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MACF1	NM_012090	exon54	c.C8203T	p.Q2735X	ACCCAGCAGTTCC		240	4	0.02	147	0	0		909		4	0	0				T	39852903	C	T	39852903	4	4	96	1	0	0	0	0	0	1	0	0	9189	711	25	2	14564	2	MACF1	1	39852903	Nonsense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	1387881	39852903	209397718	20	6654											
OXCT2	64064	broad.mit.edu	37	chr1	40235515	40235515	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgtgcacgtcaaacacGgccttctcggtgatgatgcg	11	12	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	OXCT2	NM_022120	exon1	c.C1413A	p.A471A	AAACACGGCCTTC		969	8	0.01	464	0	0		12		32	0	0				T	40235515	G	T	40235515	2	4	96	1	0	0	0	0	0	0	0	1	11376	1103	39	1		1	OXCT2	1	40235515	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	382612	40235515	209015106	21	6655											
RIMS3	9783	broad.mit.edu	37	chr1	41094487	41094487	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgtgacacccacctgcaGcaccttgccctggggtccct	9	19	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RIMS3	NM_014747	exon7	c.C709A	p.L237M	CCTGCAGCACCTT		203	5	0.02	100	0	0		44		11	0	0				T	41094487	G	T	41094487	3	4	96	1	0	0	0	0	1	0	0	0	13420	962	34	2	225	2	RIMS3	1	41094487	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	858972	41094487	208156134	22	6656											
ATP6V0B	533	broad.mit.edu	37	chr1	44442294	44442294	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaggctgtggccatctacgGcatcatcatggcaattgtca	11	10	4	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ATP6V0B	NM_004047	exon5	c.G311T	p.G104V	TCTACGGCATCAT		259	4	0.02	164	0	0		22		1048	0	0				T	44442294	G	T	44442294	3	4	96	1	0	0	0	0	1	0	0	0	1169	1203	42	2	329	2	ATP6V0B	1	44442294	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3347807	44442294	204808327	23	6657											
BEST4	266675	broad.mit.edu	37	chr1	45250928	45250928	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctggctccacaaactggCggccaaccagggagagggca	13	14	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	BEST4,colon,carcinoma,0,1	BEST4	NM_153274	exon6	c.G764A	p.R255H	AACTGGCGGCCAA		687	8	0.01	378	0	0		20	1	3	0	0				T	45250928	C	T	45250928	3	4	96	1	0	0	0	0	1	0	0	0	1405	768	27	1	673	1	BEST4	1	45250928	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	808634	45250928	203999693	24	6658											
PTCH2	8643	broad.mit.edu	37	chr1	45294672	45294672	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acctggagaggggtgccaggCagagcctctgtgaaggcatg	17	9	1	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PTCH2	NM_003738	exon11	c.G1446T	p.L482L	GCCAGGCAGAGCC		240	5	0.02	159	2	0.0125786164		96		46	0	0				A	45294672	C	A	45294672	2	1	96	1	0	0	0	0	0	0	0	1	12779	697	25	2		2	PTCH2	1	45294672	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	43744	45294672	203955949	25	6659											
MUTYH	4595	broad.mit.edu	37	chr1	45796995	45796995	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagcttgatgtgagagaaGgtgtggacaacctggaggaa	16	5	1	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MUTYH	NM_001128425	exon14	c.C1335A	p.T445T	AGAGAAGGTGTGG		214	3	0.01	111	0	0		38		202	0	0				T	45796995	G	T	45796995	2	4	96	1	0	0	0	0	0	0	0	1	10040	987	35	3		3	MUTYH	1	45796995	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	502323	45796995	203453626	26	6660											
CDCP2	200008	broad.mit.edu	37	chr1	54605300	54605300	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtagccaatggagaaggaGctggagaagaccattcatgg	15	6	1	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CDCP2	NM_201546	exon4	c.C1243A	p.L415I	GAAGGAGCTGGAG		261	5	0.02	192	1	0.0052083333		52		0	0					T	54605300	G	T	54605300	3	4	96	1	0	0	0	0	1	0	0	0	3116	971	34	2	110	2	CDCP2	1	54605300	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	8808305	54605300	194645321	27	6661											
INADL	10207	broad.mit.edu	37	chr1	62261198	62261198	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgctgcgtaccacaatGgccacattcaagtgaatgac	10	11	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	INADL	NM_176877	exon10	c.G1228T	p.G410C	CACAATGGCCACA		214	5	0.02	165	0	0		179		10	0	0				T	62261198	G	T	62261198	3	4	96	1	0	0	0	0	1	0	0	0	7774	1348	47	3	1262	3	INADL	1	62261198	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	7655898	62261198	186989423	28	6662											
LRRC40	55631	broad.mit.edu	37	chr1	70650540	70650540	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcattatgctggagatacagGcacttcaggtttcttaggtt	10	7	3	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	LRRC40	NM_017768	exon4	c.C465A	p.C155X	ATACAGGCACTTC		226	4	0.02	179	0	0		66		24	0	0				T	70650540	G	T	70650540	4	4	96	1	0	0	0	0	0	1	0	0	9042	1195	42	2	1391	2	LRRC40	1	70650540	Nonsense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	8389342	70650540	178600081	29	6663											
USP33	23032	broad.mit.edu	37	chr1	78194095	78194096	+	Frame_Shift_Ins	INS	-	-	T													cagaatttactttattaatcINSttattgcacatcttctcttt					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	USP33	NM_201626	exon11	c.1113_1114insA	p.K371fs	ATTAATCTTATTG		263	6	0.02	155	0	0		87		34	0	0				T	78194096	-	T	78194095	7	5	96	1	0	1	1	0	0	0	0	0	17123	912	32	0	1787	0	USP33	1	78194095	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	7543555	78194095	171056526	30	6664											
PKN2	5586	broad.mit.edu	37	chr1	89270133	89270134	+	Frame_Shift_Ins	INS	-	-	T													ggtctctgtgtgctgtaaaaINStttctgaggttagaagattt					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PKN2	NM_006256	exon9	c.1341_1342insT	p.K447fs	TGTAAAATTTCTG		325	7	0.02	218	0	0		109		8	0	0				T	89270134	-	T	89270133	7	5	96	1	0	1	1	0	0	0	0	0	12027	98	4	0	1375	0	PKN2	1	89270133	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	11076038	89270133	159980488	31	6665											
GBP2	2634	broad.mit.edu	37	chr1	89579899	89579900	+	Frame_Shift_Ins	INS	-	-	G													gagttctctatctgggccaaINSggccaggactgcgttctcca					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	GBP2,NS,malignant_melanoma,+1,1	GBP2	NM_004120	exon7	c.949_950insC	p.L317fs	GGGCCAAGGCCAG		429	7	0.02	298	0	0		58	1	19	0	0				G	89579900	-	G	89579899	7	5	96	1	0	1	1	0	0	0	0	0	6313	69	3	0	846	0	GBP2	1	89579899	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	309766	89579899	159670722	32	6666											
PRPF38B	55119	broad.mit.edu	37	chr1	109238796	109238796	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gactctccatatattagagcGcttggatttatgtatataag	8	6	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PRPF38B	NM_018061	exon3	c.G477T	p.A159A	TAGAGCGCTTGGA		403	10	0.02	290	1	0.0034482759		55		51	0	0				T	109238796	G	T	109238796	2	4	96	1	0	0	0	0	0	0	0	1	12619	1074	38	1		1	PRPF38B	1	109238796	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	19658897	109238796	140011825	33	6667											
STXBP3	6814	broad.mit.edu	37	chr1	109350028	109350028	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taaattactttttagtgctcGccagaaacccagagctaatt	6	9	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	STXBP3	NM_007269	exon18	c.G1541T	p.R514L	GTGCTCGCCAGAA		239	3	0.01	129	1	0.007751938		44		94	0	0				T	109350028	G	T	109350028	3	4	96	1	0	0	0	0	1	0	0	0	15409	1087	38	1	1611	1	STXBP3	1	109350028	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	111232	109350028	139900593	34	6668											
AKNAD1	254268	broad.mit.edu	37	chr1	109377673	109377673	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtggccggggtgctccttGggaatctgggggagccacac	19	10	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	AKNAD1	NM_152763	exon8	c.C1542A	p.P514P	CTCCTTGGGAATC		296	4	0.01	208	0	0		83		0	0					T	109377673	G	T	109377673	2	4	96	1	0	0	0	0	0	0	0	1	461	1335	47	3		3	AKNAD1	1	109377673	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	27645	109377673	139872948	35	6669											
KCNC4	3749	hgsc.bcm.edu	37	chr1	110768693	110768694	+	Frame_Shift_Ins	INS	-	-	C													tccccgacccccgaggagcgINSccgggccctgcgacgctcca					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KCNC4	NM_001039574	exon3	c.1712_1713insC	p.R571fs	AGGAGCGCCGGGC		199	11	0.06	139	0	0		113		16	0	0				C	110768694	-	C	110768693	7	5	96	1	0	1	1	0	0	0	0	0	8060	1087	38	0	1856	0	KCNC4	1	110768693	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	1391020	110768693	138481928	36	6670											
OVGP1	5016	bcgsc.ca	37	chr1	111957533	111957533	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgactcacaggggtcacagaCtgatgacccacaggggtcag	13	11	3	4	rs112145355	bycluster	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	OVGP1	NM_002557	exon11	c.G1590A	p.Q530Q	CACAGACTGATGA		192	35	0.18	120	2	0.0166666667		177		1	0	0				T	111957533	C	T	111957533	2	4	96	1	0	0	0	0	0	0	0	1	11371	564	20	3		3	OVGP1	1	111957533	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	1188840	111957533	137293088	37	6671											
CD101	9398	broad.mit.edu	37	chr1	117564466	117564466	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccaagacttatttcagctGcacattctgaatgtggaaga	8	9	2	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CD101	NM_001256109	exon7	c.G2289A	p.L763L	TCAGCTGCACATT		243	4	0.02	183	1	0.0054644809		95		4	0	0				A	117564466	G	A	117564466	2	1	96	1	0	0	0	0	0	0	0	1	2984	1306	46	2		2	CD101	1	117564466	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	5606933	117564466	131686155	38	6672											
PDE4DIP	9659	broad.mit.edu	37	chr1	144882849	144882849	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatctgctctttcagctccGcattctcaaggcaaaggctc	7	15	4	0	rs150222697	bycluster	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	PDE4DIP_ENST00000369356,NS,carcinoma,+1,2	PDE4DIP	NM_001198832	exon27	c.C3368T	p.A1123V	AGCTCCGCATTCT		356	6	0.02	256	1	0.00390625		817	2	0	0					A	144882849	G	A	144882849	3	1	96	1	0	0	0	0	1	0	0	0	11689	1087	38	1	3954	1	PDE4DIP	1	144882849	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	27318383	144882849	104367772	39	6673											
PDE4DIP	9659	broad.mit.edu	37	chr1	144921887	144921887	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcactctcgtgtgctgcaGcctctacaaattgcacacat	7	13	3	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PDE4DIP	NM_001002811	exon5	c.C1631A	p.A544D	GCTGCAGCCTCTA		312	3	0.01	222	1	0.0045045045		817		20	0	0				T	144921887	G	T	144921887	3	4	96	1	0	0	0	0	1	0	0	0	11689	971	34	2	6052	2	PDE4DIP	1	144921887	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	39038	144921887	104328734	40	6674											
SNX27	81609	broad.mit.edu	37	chr1	151665438	151665438	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcagcgatgggacacagatGaagaagggatggccttctgt	15	7	1	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SNX27	NM_030918	exon10	c.G1441T	p.E481X	ACAGATGAAGAAG		233	4	0.02	204	2	0.0098039216		44		7	0	0				T	151665438	G	T	151665438	4	4	96	1	0	0	0	0	0	1	0	0	14950	1291	45	3	1479	3	SNX27	1	151665438	Nonsense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	6743551	151665438	97585183	41	6675											
TDRKH	11022	broad.mit.edu	37	chr1	151751708	151751708	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatagaacgaattgtctcGccgcctctccctacattaaa	6	13	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TDRKH	NM_001083965	exon5	c.C432T	p.G144G	TGTCTCGCCGCCT		188	3	0.02	138	0	0		45		10	0	0				A	151751708	G	A	151751708	2	1	96	1	0	0	0	0	0	0	0	1	15795	1074	38	1		1	TDRKH	1	151751708	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	86270	151751708	97498913	42	6676											
LOR	4014	broad.mit.edu	37	chr1	153233476	153233476	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cagcccccagtggactgcgtGaagacctctggcggcggtgg	16	13	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	LOR	NM_000427	exon2	c.G51T	p.V17V	CTGCGTGAAGACC		206	4	0.02	155	1	0.0064516129		19		0	0					T	153233476	G	T	153233476	2	4	96	1	0	0	0	0	0	0	0	1	8941	1277	45	3		3	LOR	1	153233476	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1481768	153233476	96017145	43	6677											
BCAN	63827	broad.mit.edu	37	chr1	156626126	156626126	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggacatgcttggaggaggaGgaaggggtccgctgcctatg	19	7	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	BCAN,NS,carcinoma,+2,1	BCAN	NM_021948	exon9	c.G1995T	p.E665D	GGAGGAGGAAGGG		224	3	0.01	140	0	0		174	1	4	0	0				T	156626126	G	T	156626126	3	4	96	1	0	0	0	0	1	0	0	0	1343	991	35	3	2099	3	BCAN	1	156626126	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3392650	156626126	92624495	44	6678											
NTRK1	4914	broad.mit.edu	37	chr1	156846300	156846300	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gcttcttcggcgtctgcaccGagggccgccccctgctcatg	12	17	3	0	rs150579345	bycluster;byfrequency;alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	NTRK1_ENST00000392302,NS,carcinoma,-2,2	NTRK1	NM_002529	exon14	c.G1741T	p.E581X	TGCACCGAGGGCC		173	3	0.02	108	0	0		287	2	0	0					T	156846300	G	T	156846300	4	4	96	1	0	0	0	0	0	1	0	0	10753	1059	37	1	1925	1	NTRK1	1	156846300	Nonsense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	220174	156846300	92404321	45	6679											
NR1I3	0	broad.mit.edu	37	chr1	161202704	161202704	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggggccagggtgggcaaGggctggtgatggatgaacag	20	6	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	NR1I3_ENST00000428574,NS,carcinoma,0,2	NR1I3	NM_001077481	exon5	c.C441A	p.P147P	GGGCAAGGGCTGG		261	3	0.01	178	0	0		74	2	5	0	0				T	161202704	G	T	161202704	2	4	96	1	0	0	0	0	0	0	0	1	10668	987	35	3		3	NR1I3	1	161202704	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	4356404	161202704	88047917	46	6680											
FCGR3A	2214	broad.mit.edu	37	chr1	161518226	161518226	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaccgatatggacttctaGctgcaccgggtcactgaggg	12	12	3	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FCGR3A	NM_000569	exon3	c.C412A	p.L138I	CTTCTAGCTGCAC		629	7	0.01	480	4	0.0083333333		38		14	0	0				T	161518226	G	T	161518226	3	4	96	1	0	0	0	0	1	0	0	0	5816	962	34	2	472	2	FCGR3A	1	161518226	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	315522	161518226	87732395	47	6681											
FCRLB	127943	broad.mit.edu	37	chr1	161697415	161697415	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctctcactttgctgtgaGcccgggaaccccagagacca	9	16	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FCRLB	NM_001002901	exon6	c.G1244T	p.S415I	CTGTGAGCCCGGG		276	4	0.01	179	1	0.0055865922		35		1	0	0				T	161697415	G	T	161697415	3	4	96	1	0	0	0	0	1	0	0	0	5833	971	34	2	1266	2	FCRLB	1	161697415	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	179189	161697415	87553206	48	6682											
PBX1	5087	broad.mit.edu	37	chr1	164815847	164815847	+	Frame_Shift_Del	DEL	T	T	-													ggaggttggcaggatgctacTaccccttcatcagtgacctc					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PBX1	NM_002585	exon9	c.1227delT	p.T409fs	TGCTACTACCCCT		252	7	0.03	146	0	0		60		143	0	0				-	164815847	T	-	164815847	7	5	96	1	0	1	0	1	0	0	0	0	11538	1509	53	0	1261	0	PBX1	1	164815847	Frame_Shift_Del	DEL	T	TCGA-VF-A8A8-01A-11D-A435-10	3118432	164815847	84434774	49	6683											
KLHL20	27252	broad.mit.edu	37	chr1	173743459	173743459	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcaggtatgatccgaaggaGaacaagtggactcgggtagc	15	7	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KLHL20	NM_014458	exon9	c.G1311T	p.E437D	GAAGGAGAACAAG		172	3	0.02	120	0	0		54		13	0	0				T	173743459	G	T	173743459	3	4	96	1	0	0	0	0	1	0	0	0	8417	933	33	3	1341	3	KLHL20	1	173743459	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	8927612	173743459	75507162	50	6684											
RABGAP1L	9910	broad.mit.edu	37	chr1	174516980	174516980	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tattttgtcttttagcaacaGatgaaatttagtcttacacc	5	7	2	2	rs190670221	by1000genomes	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RABGAP1L	.	.	.	.	GCAACAGATGAAA		229	5	0.02	147	1	0.0068027211		103		0	0					T	174516980	G	T	174516980	3	4	96	1	0	0	0	0	1	0	0	0	13016	957	33	3		3	RABGAP1L	1	174516980	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	773521	174516980	74733641	51	6685											
ASTN1	460	broad.mit.edu	37	chr1	176852036	176852036	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aggcatcgtatgatcagagaGatggtggtgagctgcttgtc	15	6	1	4	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ASTN1	NM_207108	exon20	c.C3321A	p.I1107I	CAGAGAGATGGTG		246	4	0.02	161	0	0		314		7	0	0				T	176852036	G	T	176852036	2	4	96	1	0	0	0	0	0	0	0	1	1063	932	33	3		3	ASTN1	1	176852036	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2335056	176852036	72398585	52	6686											
RASAL2	9462	broad.mit.edu	37	chr1	178426900	178426900	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cattattgctggttcagcaaGcctcctctcagagcatgact	8	12	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RASAL2	NM_170692	exon14	c.G2473T	p.A825S	CAGCAAGCCTCCT		191	4	0.02	163	0	0		334		17	0	0				T	178426900	G	T	178426900	3	4	96	1	0	0	0	0	1	0	0	0	13115	971	34	2	2565	2	RASAL2	1	178426900	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1574864	178426900	70823721	53	6687											
NPHS2	7827	broad.mit.edu	37	chr1	179533849	179533849	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acgcagaaccagatggaaaaAgggaaggtcatgatgatgaa	13	5	1	5	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NPHS2	NM_014625	exon2	c.T354C	p.P118P	GGAAAAAGGGAAG		238	9	0.04	171	0	0		46		0	0					G	179533849	A	G	179533849	2	3	96	1	0	0	0	0	0	0	0	1	10629	59	3	4		4	NPHS2	1	179533849	Silent	SNP	A	TCGA-VF-A8A8-01A-11D-A435-10	1106949	179533849	69716772	54	6688											
CEP350	9857	broad.mit.edu	37	chr1	180063647	180063648	+	Frame_Shift_Ins	INS	-	-	A													aacaccccaagacctatcccINSaaaatgttgaggaacagtcg					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CEP350	NM_014810	exon34	c.8407_8408insA	p.Q2803fs	CTATCCCAAAATG		369	6	0.02	256	0	0		418		16	0	0				A	180063648	-	A	180063647	7	5	96	1	0	1	1	0	0	0	0	0	3276	595	21	0	8537	0	CEP350	1	180063647	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	529798	180063647	69186974	55	6689											
CEP350	9857	broad.mit.edu	37	chr1	180068046	180068046	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttcagtcttaaaaaggagCcaaaccacaaaacagattgg	8	8	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CEP350	NM_014810	exon37	c.C9115T	p.P3039S	AAGGAGCCAAACC		318	4	0.01	231	1	0.0043290043		418		25	0	0				T	180068046	C	T	180068046	3	4	96	1	0	0	0	0	1	0	0	0	3276	739	26	2	9257	2	CEP350	1	180068046	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	4399	180068046	69182575	56	6690											
LHX4	89884	broad.mit.edu	37	chr1	180199672	180199672	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttcgctccgagatgatgcAgagtgcgactgtccccgcgg	13	13	0	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	LHX4	NM_033343	exon1	c.A8G	p.Q3R	TGATGCAGAGTGC		143	4	0.03	118	0	0		36		0	0					G	180199672	A	G	180199672	3	3	96	1	0	0	0	0	1	0	0	0	8812	188	7	4	10	4	LHX4	1	180199672	Missense_Mutation	SNP	A	TCGA-VF-A8A8-01A-11D-A435-10	131626	180199672	69050949	57	6691											
DHX9	1660	broad.mit.edu	37	chr1	182825677	182825677	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgttacaggagctttattGcagaaatgaccatttatatc	8	6	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DHX9	NM_001357	exon7	c.G637T	p.A213S	TTTATTGCAGAAA		202	6	0.03	110	0	0		114		68	0	0				T	182825677	G	T	182825677	3	4	96	1	0	0	0	0	1	0	0	0	4544	1319	46	2	659	2	DHX9	1	182825677	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2626005	182825677	66424944	58	6692											
KIF21B	23046	broad.mit.edu	37	chr1	200948728	200948728	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatgtaggaggtggacacGgagaacacaagccccgagtg	15	8	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KIF21B	NM_001252102	exon30	c.C4095A	p.S1365S	GGACACGGAGAAC		187	5	0.03	164	0	0		208		4	0	0				T	200948728	G	T	200948728	2	4	96	1	0	0	0	0	0	0	0	1	8330	1103	39	1		1	KIF21B	1	200948728	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	18123051	200948728	48301893	59	6693											
CHIT1	1118	broad.mit.edu	37	chr1	203198779	203198779	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caccatgatgcagctcagcgGcaggctgcagcccatacaaa	10	14	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CHIT1	.	.	.	.	TCAGCGGCAGGCT		237	4	0.02	150	0	0		61		0	0					A	203198779	G	A	203198779	3	1	96	1	0	0	0	0	1	0	0	0	3368	1218	42	2		2	CHIT1	1	203198779	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2250051	203198779	46051842	60	6694											
PLEKHA6	22874	broad.mit.edu	37	chr1	204192650	204192651	+	Frame_Shift_Ins	INS	-	-	G													ccgtggggattcagacgacaINSgggggtttgctggaggagcc					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PLEKHA6	NM_014935	exon22	c.3095_3096insC	p.L1032fs	GACGACAGGGGGT		248	7	0.03	216	0	0		115		2	0	0				G	204192651	-	G	204192650	7	5	96	1	0	1	1	0	0	0	0	0	12107	188	7	0	55	0	PLEKHA6	1	204192650	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	993871	204192650	45057971	61	6695											
NUAK2	81788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	205274386	205274386	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgtttcactaggatcttaTggtcatgcccatcaaagggc	9	10	5	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_030952	exon6	c.A764T	p.H255L	ATCTTATGGTCAT		97	14	0.14	72	0	0				4	0	0				A	205274386	T	A	205274386	3	1	96	1	0	0	0	0	1	0	0	0	10760	1464	51	5	1130	5	NUAK2	1	205274386	Missense_Mutation	SNP	T	TCGA-VF-A8A8-01A-11D-A435-10	1081736	205274386	43976235	62	6696											
RASSF5	83593	mdanderson.org	37	chr1	206681029	206681029	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tacagagcctgagcggccccGagctaccgccgccgcccccc	11	21	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_182663	exon1	c.G94T	p.E32X	GGCCCCGAGCTAC		29	3	0.1	14	0	0				1	0	0				T	206681029	G	T	206681029	4	4	96	1	0	0	0	0	0	1	0	0	13140	1059	37	1	96	1	RASSF5	1	206681029	Nonsense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1406643	206681029	42569592	63	6697											
LAMB3	3914	broad.mit.edu	37	chr1	209805963	209805963	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcctgcagaggccccagGcttgggtgcgcagcgatcag	18	12	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	LAMB3	NM_000228	exon8	c.C787A	p.P263T	CCCCAGGCTTGGG		276	5	0.02	196	1	0.0051020408		136		6	0	0				T	209805963	G	T	209805963	3	4	96	1	0	0	0	0	1	0	0	0	8650	1203	42	2	2795	2	LAMB3	1	209805963	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3124934	209805963	39444658	64	6698											
GPATCH2	55105	broad.mit.edu	37	chr1	217604630	217604630	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtccaaggcctgacccagGcgtccagcccatattctgaa	9	15	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	GPATCH2,NS,carcinoma,0,1	GPATCH2	NM_018040	exon10	c.C1444A	p.P482T	ACCCAGGCGTCCA		296	4	0.01	197	0	0		53	1	13	0	0				T	217604630	G	T	217604630	3	4	96	1	0	0	0	0	1	0	0	0	6630	1203	42	2	146	2	GPATCH2	1	217604630	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	7798667	217604630	31645991	65	6699											
HLX	3142	broad.mit.edu	37	chr1	221054601	221054602	+	Frame_Shift_Ins	INS	-	-	C													ctcaggcctgcagccctcggINSccggccagttcttcgcatct					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	HLX	NM_021958	exon2	c.658_659insC	p.A220fs	CCCTCGGCCGGCC		271	8	0.03	175	0	0		67		5	0	0				C	221054602	-	C	221054601	7	5	96	1	0	1	1	0	0	0	0	0	7256	1203	42	0	664	0	HLX	1	221054601	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	3449971	221054601	28196020	66	6700											
HLX	3142	broad.mit.edu	37	chr1	221057861	221057861	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggagtggtgggagcagcGgcggcggcggcaatagtttc	20	8	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	HLX	NM_021958	exon4	c.G1282A	p.G428S	AGCAGCGGCGGCG		88	3	0.03	73	1	0.0136986301		67		12	0	0				A	221057861	G	A	221057861	3	1	96	1	0	0	0	0	1	0	0	0	7256	1116	39	1	1296	1	HLX	1	221057861	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3260	221057861	28192760	67	6701											
ZNF678	339500	broad.mit.edu	37	chr1	227842069	227842069	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	attccattcaagaccttttgCcagagcaggatatgaaagat	8	8	1	4	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZNF678	NM_178549	exon4	c.C283T	p.P95S	CTTTTGCCAGAGC		311	5	0.02	233	0	0		137		3	0	0				T	227842069	C	T	227842069	3	4	96	1	0	0	0	0	1	0	0	0	18141	739	26	2	297	2	ZNF678	1	227842069	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	6784208	227842069	21408552	68	6702											
ARF1	375	broad.mit.edu	37	chr1	228285565	228285565	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccccaggacctccccaacGccatgaatgcggccgagatc	9	18	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ARF1	NM_001024228	exon5	c.G397T	p.A133S	CCCAACGCCATGA		301	3	0.01	232	0	0		24		1082	0	0				T	228285565	G	T	228285565	3	4	96	1	0	0	0	0	1	0	0	0	841	1087	38	1	411	1	ARF1	1	228285565	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	443496	228285565	20965056	69	6703											
OBSCN	84033	broad.mit.edu	37	chr1	228529821	228529821	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgttgtgtgtcctcaggGcccccggactttgaagagga	15	10	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	OBSCN	NM_001271223	exon86	c.G20907T	p.R6969R	CTCAGGGCCCCCG		210	3	0.01	128	0	0		2142		15	0	0				T	228529821	G	T	228529821	5	4	96	1	0	0	0	0	0	0	1	0	10859	1217	42	2	18330	2	OBSCN	1	228529821	Splice_Site	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	244256	228529821	20720800	70	6704											
ACTA1	58	broad.mit.edu	37	chr1	229568835	229568835	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagccattgtcgcacacgaGggcggtggtctcgtcttcgt	15	11	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ACTA1	NM_001100	exon2	c.C28A	p.L10I	ACACGAGGGCGGT		298	3	0.01	193	1	0.0051813472		65		34	0	0				T	229568835	G	T	229568835	3	4	96	1	0	0	0	0	1	0	0	0	191	1000	35	3	1129	3	ACTA1	1	229568835	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1039014	229568835	19681786	71	6705											
C1orf198	84886	broad.mit.edu	37	chr1	230979534	230979534	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgccttgggaggacttgaGggcctgggagccctgggaag	19	9	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	C1orf198	NM_032800	exon3	c.C493A	p.L165I	ACTTGAGGGCCTG		128	4	0.03	91	0	0		29		19	0	0				T	230979534	G	T	230979534	3	4	96	1	0	0	0	0	1	0	0	0	2039	1000	35	3	498	3	C1orf198	1	230979534	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1410699	230979534	18271087	72	6706											
LYST	1130	broad.mit.edu	37	chr1	235922556	235922556	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtttatgatctgctttgacCactggaaatcccagcactcc	7	12	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	LYST	NM_000081	exon23	c.G6597A	p.V2199V	TTTGACCACTGGA		259	3	0.01	170	1	0.0058823529		370		0	0					T	235922556	C	T	235922556	2	4	96	1	0	0	0	0	0	0	0	1	9173	581	21	3		3	LYST	1	235922556	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	4943022	235922556	13328065	73	6707											
ADSS	159	broad.mit.edu	37	chr1	244615013	244615013	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccttcgtcgccccactgcGcaccgagcaccaccgtcacc	8	21	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ADSS	NM_001126	exon1	c.C107A	p.A36E	CACTGCGCACCGA		220	4	0.02	117	0	0		49		54	0	0				T	244615013	G	T	244615013	3	4	96	1	0	0	0	0	1	0	0	0	346	1087	38	1	1315	1	ADSS	1	244615013	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	8692457	244615013	4635608	74	6708											
C2orf50	130813	broad.mit.edu	37	chr2	11284192	11284193	+	Frame_Shift_Ins	INS	-	-	G													tggacttcttcttcacagaaINSggggcccggaagaagaagct					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	C2orf50	NM_182500	exon3	c.444_445insG	p.E148fs	CACAGAAGGGGCC		329	5	0.02	278	0	0		12		15	0	0				G	11284193	-	G	11284192	7	5	96	1	0	1	1	0	0	0	0	0	2186	69	3	0	454	0	C2orf50	2	11284192	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10		11284192	231915181	75	6709											
GEN1	348654	broad.mit.edu	37	chr2	17954019	17954019	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caccgtacagaacatgatagGcaactcagtgaagtagagaa	10	8	1	4	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	GEN1	NM_182625	exon8	c.G921T	p.R307S	TGATAGGCAACTC		259	5	0.02	179	0	0		79		1	0	0				T	17954019	G	T	17954019	3	4	96	1	0	0	0	0	1	0	0	0	6376	1194	42	2	947	2	GEN1	2	17954019	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	6669827	17954019	225245354	76	6710											
PUM2	23369	broad.mit.edu	37	chr2	20453737	20453737	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caatcagtaaagctctctcaGcacgggaggcatgagtaaca	10	10	3	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PUM2	NM_015317	exon19	c.C2909A	p.A970D	CTCTCAGCACGGG		106	3	0.03	82	0	0		91		59	0	0				T	20453737	G	T	20453737	3	4	96	1	0	0	0	0	1	0	0	0	12877	971	34	2	293	2	PUM2	2	20453737	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2499718	20453737	222745636	77	6711											
APOB	338	broad.mit.edu	37	chr2	21232321	21232321	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacactgcaactgtggccttGgtttcctctaaaaacagttt	7	10	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	APOB	NM_000384	exon26	c.C7419A	p.T2473T	GGCCTTGGTTTCC		206	6	0.03	164	1	0.006097561		761		0	0					T	21232321	G	T	21232321	2	4	96	1	0	0	0	0	0	0	0	1	782	1335	47	3		3	APOB	2	21232321	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	778584	21232321	221967052	78	6712											
NCOA1	8648	broad.mit.edu	37	chr2	24952606	24952606	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcatgggcatgcagcccagGcaaactctaaacagacctcc	10	14	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NCOA1	NM_147223	exon15	c.G3123A	p.R1041R	GCCCAGGCAAACT		208	4	0.02	173	3	0.0173410405		210		8	0	0				A	24952606	G	A	24952606	2	1	96	1	0	0	0	0	0	0	0	1	10274	1194	42	2		2	NCOA1	2	24952606	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3720285	24952606	218246767	79	6713											
IFT172	26160	broad.mit.edu	37	chr2	27688723	27688723	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcacctcggtctttcccccGccccgctccagacctataac	5	20	2	1	rs373009930	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	IFT172	NM_015662	exon17	c.C1719A	p.G573G	TCCCCCGCCCCGC		297	3	0.01	180	0	0		119		4	0	0				T	27688723	G	T	27688723	2	4	96	1	0	0	0	0	0	0	0	1	7600	1074	38	1		1	IFT172	2	27688723	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2736117	27688723	215510650	80	6714											
SLC4A1AP	22950	broad.mit.edu	37	chr2	27908039	27908039	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	atgaaaagaaaaaactggagGatggaagcctcagtaggcca	12	6	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLC4A1AP	NM_018158	exon10	c.G2011T	p.D671Y	CTGGAGGATGGAA		269	4	0.01	227	0	0		63		126	0	0				T	27908039	G	T	27908039	3	4	96	1	0	0	0	0	1	0	0	0	14707	1174	41	3	2049	3	SLC4A1AP	2	27908039	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	219316	27908039	215291334	81	6715											
THUMPD2	80745	broad.mit.edu	37	chr2	39998751	39998752	+	Frame_Shift_Ins	INS	-	-	A													tcaaatcagaacaggtggtgINSaaaaaaacctttcctgaaat					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	THUMPD2	NM_025264	exon2	c.156_157insT	p.F52fs	GGTGGTGAAAAAA		466	0	0	377	0	0		35		0	0					A	39998752	-	A	39998751	7	5	96	1	0	1	1	0	0	0	0	0	15942	1281	45	0	1391	0	THUMPD2	2	39998751	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	12090712	39998751	203200622	82	6716											
THADA	63892	broad.mit.edu	37	chr2	43797579	43797579	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttggttaactcattctctGgttcacgtttggatttactc	8	8	3	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	THADA	NM_001083953	exon14	c.C2135A	p.P712Q	TTCTCTGGTTCAC		301	6	0.02	223	4	0.0179372197		131		4	0	0				T	43797579	G	T	43797579	3	4	96	1	0	0	0	0	1	0	0	0	15899	1348	47	3	3826	3	THADA	2	43797579	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3798828	43797579	199401794	83	6717											
EPAS1	2034	broad.mit.edu	37	chr2	46596999	46596999	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attggttaccaccctgaggaGctgcttggccgctcagccta	11	13	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	EPAS1	NM_001430	exon7	c.G813T	p.E271D	TGAGGAGCTGCTT		264	4	0.02	165	0	0		83		9	0	0				T	46596999	G	T	46596999	3	4	96	1	0	0	0	0	1	0	0	0	5178	962	34	2	839	2	EPAS1	2	46596999	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2799420	46596999	196602374	84	6718											
NRXN1	9378	broad.mit.edu	37	chr2	50724692	50724692	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agctcacagtaatctatgtcGccatttttacacaggtcaat	6	10	3	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NRXN1	NM_001135659	exon15	c.C2778T	p.G926G	TATGTCGCCATTT		157	5	0.03	152	0	0		1118		0	0					A	50724692	G	A	50724692	2	1	96	1	0	0	0	0	0	0	0	1	10712	1074	38	1		1	NRXN1	2	50724692	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	4127693	50724692	192474681	85	6719											
VRK2	7444	broad.mit.edu	37	chr2	58386754	58386754	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttagtgaagagacaaacGcagatgtttattattatcgc	8	7	1	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	VRK2	NM_001130480	exon13	c.G1453T	p.A485S	ACAAACGCAGATG		156	4	0.03	140	0	0		46		194	0	0				T	58386754	G	T	58386754	3	4	96	1	0	0	0	0	1	0	0	0	17279	1087	38	1	1512	1	VRK2	2	58386754	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	7662062	58386754	184812619	86	6720											
VPS54	51542	broad.mit.edu	37	chr2	64193029	64193029	+	Frame_Shift_Del	DEL	A	A	-													ccttttccaccagcagtattAaaatgagaccatggtaaaac					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	VPS54	NM_016516	exon6	c.564delT	p.F188fs	AGTATTAAAATGA		639	5	0.01	412	0	0		57		7	0	0				-	64193029	A	-	64193029	7	5	96	1	0	1	0	1	0	0	0	0	17275	359	13	0	2441	0	VPS54	2	64193029	Frame_Shift_Del	DEL	A	TCGA-VF-A8A8-01A-11D-A435-10	5806275	64193029	179006344	87	6721											
VAX2	25806	broad.mit.edu	37	chr2	71148283	71148283	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagggcctggacctggaccgGcccaagcggacacgtacatc	13	14	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	VAX2	NM_012476	exon2	c.G303T	p.R101R	GGACCGGCCCAAG		308	3	0.01	220	1	0.0045454545		27		0	0					T	71148283	G	T	71148283	2	4	96	1	0	0	0	0	0	0	0	1	17194	1190	42	2		2	VAX2	2	71148283	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	6955254	71148283	172051090	88	6722											
ATP6V1B1	525	broad.mit.edu	37	chr2	71190761	71190761	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cagagggacagatctacgtgGacagacagcttcacaacaga	11	10	2	4	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ATP6V1B1	NM_001692	exon11	c.G1120T	p.D374Y	TACGTGGACAGAC		333	6	0.02	221	2	0.0090497738		66		0	0					T	71190761	G	T	71190761	3	4	96	1	0	0	0	0	1	0	0	0	1176	1174	41	3	1162	3	ATP6V1B1	2	71190761	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	42478	71190761	172008612	89	6723											
ALMS1	7840	broad.mit.edu	37	chr2	73676896	73676896	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaagtttcagccttccctgGaccagctgaccagatgactg	10	12	1	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ALMS1	NM_015120	exon8	c.G3239T	p.G1080V	TCCCTGGACCAGC		253	4	0.02	176	0	0		384		2	0	0				T	73676896	G	T	73676896	3	4	96	1	0	0	0	0	1	0	0	0	531	1174	41	3	3269	3	ALMS1	2	73676896	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2486135	73676896	169522477	90	6724											
WDR54	84058	broad.mit.edu	37	chr2	74649360	74649360	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcagtgtgctgcagctgcCggctcgcaacctcacgtatt	10	15	2	0	rs138696895	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	WDR54	NM_032118	exon2	c.C80T	p.P27L	AGCTGCCGGCTCG		199	5	0.03	131	0	0		17		96	1	0.01				T	74649360	C	T	74649360	3	4	96	1	0	0	0	0	1	0	0	0	17365	652	23	1	82	1	WDR54	2	74649360	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	972464	74649360	168550013	91	6725											
USP39	10713	broad.mit.edu	37	chr2	85843583	85843583	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggagcctgagcgggaggtgCgaggtgcgcggggccgggcc	23	11	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	USP39	NM_001256725	exon1	c.C265T	p.R89X	GAGGTGCGAGGTG		229	3	0.01	172	0	0		33		58	0	0				T	85843583	C	T	85843583	4	4	96	1	0	0	0	0	0	1	0	0	17129	760	27	1	267	1	USP39	2	85843583	Nonsense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	11194223	85843583	157355790	92	6726											
MRPS5	64969	broad.mit.edu	37	chr2	95780894	95780894	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcattgtgtctgcagtgcaCggctcaagctggcgtaggga	15	9	2	0	rs201430985		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MRPS5	NM_031902	exon3	c.G194A	p.R65H	AGTGCACGGCTCA		251	5	0.02	196	1	0.0051020408		52		257	0	0				T	95780894	C	T	95780894	3	4	96	1	0	0	0	0	1	0	0	0	9894	536	19	1	1138	1	MRPS5	2	95780894	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	9937311	95780894	147418479	93	6727											
FAHD2A	51011	broad.mit.edu	37	chr2	96078220	96078220	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tctgctgccgagtgaatgggGaagtggtccagagcggcaac	16	9	1	2	rs376463411	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FAHD2A	NM_016044	exon6	c.G724T	p.E242X	AATGGGGAAGTGG		212	4	0.02	184	0	0		25		223	0	0				T	96078220	G	T	96078220	4	4	96	1	0	0	0	0	0	1	0	0	5404	1175	41	3	742	3	FAHD2A	2	96078220	Nonsense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	297326	96078220	147121153	94	6728											
SNRNP200	23020	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	96940775	96940775	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgaatcactgtctgtctcaGcttctttcacatccacgctg	6	14	5	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SNRNP200	NM_014014	exon45	c.C6386G	p.A2129G	GTCTCAGCTTCTT		146	46	0.32	108	1	0.0092592593		195		1175	41	0.03				C	96940775	G	C	96940775	3	2	96	1	0	0	0	0	1	0	0	0	14905	971	34	5	28	5	SNRNP200	2	96940775	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	862555	96940775	146258598	95	6729											
RPL31	6160	broad.mit.edu	37	chr2	101619185	101619185	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctcccgcaaagaagggtGgcgagaagaaaaagggccgt	16	8	0	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RPL31	NM_001098577	exon2	c.G22T	p.G8C	AAGGGTGGCGAGA		272	7	0.03	187	0	0		12		19778	12	0				T	101619185	G	T	101619185	3	4	96	1	0	0	0	0	1	0	0	0	13632	1348	47	3	24	3	RPL31	2	101619185	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	4678410	101619185	141580188	96	6730											
FBLN7	129804	broad.mit.edu	37	chr2	112922735	112922735	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacctggacaggggagcaGccccactgtagaggtatcgt	15	11	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FBLN7	NM_153214	exon3	c.G393T	p.Q131H	GGAGCAGCCCCAC		260	4	0.02	191	0	0		49		3	0	0				T	112922735	G	T	112922735	3	4	96	1	0	0	0	0	1	0	0	0	5733	962	34	2	403	2	FBLN7	2	112922735	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	11303550	112922735	130276638	97	6731											
PSD4	23550	broad.mit.edu	37	chr2	113953723	113953723	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccgattctctgatgttcaGggatgaagaagacacagcca	11	10	2	4	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PSD4	NM_012455	exon12	c.2226-1G>T	.	TGTTCAGGGATGA		315	3	0.01	200	0	0		74		0	0					T	113953723	G	T	113953723	5	4	96	1	0	0	0	0	0	0	1	0	12697	1014	35	3	2267	3	PSD4	2	113953723	Splice_Site	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1030988	113953723	129245650	98	6732											
POTEE	445582	broad.mit.edu	37	chr2	131981234	131981234	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaactcctgctggacagacGatgtcaacttaatgtccttg	8	10	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001083538	exon2	c.G587A	p.R196Q	ACAGACGATGTCA		591	10	0.02	409	2	0.0048899756				0	0					A	131981234	G	A	131981234	3	1	96	1	0	0	0	0	1	0	0	0	12310	1058	37	1	593	1	POTEE	2	131981234	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	18027511	131981234	111218139	99	6733											
UBXN4	23190	broad.mit.edu	37	chr2	136537757	136537757	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gtttattaatttctaggcagGaagaccaactgcatccattg	8	8	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	UBXN4	NM_014607	exon12	c.G1190T	p.G397V	AGGCAGGAAGACC		174	3	0.02	170	1	0.0058823529		54		56	0	0				T	136537757	G	T	136537757	3	4	96	1	0	0	0	0	1	0	0	0	16975	1174	41	3	1236	3	UBXN4	2	136537757	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	4556523	136537757	106661616	100	6734											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	141294207	141294207	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgaggaatgccatcacaggTgagctggtagtcaatgcact	13	8	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	LRP1B,NS,carcinoma,+2,1	LRP1B	NM_018557	exon46	c.A7585G	p.T2529A	CACAGGTGAGCTG		281	105	0.37	288	0	0		2	1	0	0					C	141294207	T	C	141294207	3	2	96	1	0	0	0	0	1	0	0	0	8999	1696	59	4	6398	4	LRP1B	2	141294207	Missense_Mutation	SNP	T	TCGA-VF-A8A8-01A-11D-A435-10	4756450	141294207	101905166	101	6735											
PKP4	8502	mdanderson.org	37	chr2	159499039	159499039	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcatctggttgaccttctGgaccacagagttttggaagt	11	8	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001005476	exon11	c.G1737T	p.L579L	CCTTCTGGACCAC		113	5	0.04	103	0	0				13	0	0				T	159499039	G	T	159499039	2	4	96	1	0	0	0	0	0	0	0	1	12034	1335	47	3		3	PKP4	2	159499039	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	18204832	159499039	83700334	102	6736											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	170096096	170096096	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctgtatcacacgagcacCggaaagaacctctcatattg	8	12	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	LRP2,colon,carcinoma,-1,1	LRP2	NM_004525	exon26	c.G4235A	p.R1412Q	GAGCACCGGAAAG		312	31	0.1	279	0	0		-1	1	0	0					T	170096096	C	T	170096096	3	4	96	1	0	0	0	0	1	0	0	0	9000	652	23	1	9948	1	LRP2	2	170096096	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	10597057	170096096	73103277	103	6737											
TTN	7273	broad.mit.edu	37	chr2	179430994	179430994	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgagaccaagtgatctcaGgcgttggacgacctttgaat	11	10	1	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TTN	NM_001267550	exon326	c.C79865A	p.P26622H	ATCTCAGGCGTTG		183	4	0.02	132	0	0		18412		0	0					T	179430994	G	T	179430994	3	4	96	1	0	0	0	0	1	0	0	0	16796	1000	35	3	28262	3	TTN	2	179430994	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	9334898	179430994	63768379	104	6738											
CCDC141	285025	broad.mit.edu	37	chr2	179843270	179843270	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctctgttcttctttcaaGcatggacaccagagctgccc	9	13	4	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CCDC141	NM_173648	exon3	c.C358A	p.L120I	TTTCAAGCATGGA		148	4	0.03	136	0	0		362		3	0	0				T	179843270	G	T	179843270	3	4	96	1	0	0	0	0	1	0	0	0	2793	986	34	2		2	CCDC141	2	179843270	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	412276	179843270	63356103	105	6739											
FSIP2	401024	broad.mit.edu	37	chr2	186672907	186672907	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taggctttttaatggtgaatGcaatttcgaattctgaattt	8	4	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FSIP2	NM_173651	exon17	c.G19141A	p.A6381T	GTGAATGCAATTT		458	9	0.02	406	2	0.0049261084		251		0	0					A	186672907	G	A	186672907	3	1	96	1	0	0	0	0	1	0	0	0	6109	1319	46	2	19207	2	FSIP2	2	186672907	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	6829637	186672907	56526466	106	6740											
COQ10B	80219	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	198334798	198334798	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tttcattttgttgtaggcatCttgtactgatgggagacttt	10	5	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	COQ10B	NM_025147	exon4	c.C452A	p.S151Y	AGGCATCTTGTAC		211	11	0.05	186	1	0.0053763441		18		33	1	0.03				A	198334798	C	A	198334798	3	1	96	1	0	0	0	0	1	0	0	0	3767	913	32	3	466	3	COQ10B	2	198334798	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	11661891	198334798	44864575	107	6741											
SGOL2	151246	broad.mit.edu	37	chr2	201399866	201399867	+	Frame_Shift_Ins	INS	-	-	A													aaactgaattttgagaacacINSatttcttcgcctaaagctaa					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SGOL2	NM_152524	exon3	c.281_282insA	p.T94fs	AGAACACATTTCT		440	8	0.02	365	0	0		126		3	0	0				A	201399867	-	A	201399866	7	5	96	1	0	1	1	0	0	0	0	0	14270	478	17	0	287	0	SGOL2	2	201399866	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	3065068	201399866	41799507	108	6742											
NBEAL1	65065	broad.mit.edu	37	chr2	204039941	204039942	+	Frame_Shift_Ins	INS	-	-	G													actcactattcaaattctgcINSgggggtcatgcactatctca					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NBEAL1	NM_001114132	exon41	c.6308_6309insG	p.A2103fs	ATTCTGCGGGGGT		417	0	0	404	0	0		266		1	0	0				G	204039942	-	G	204039941	7	5	96	1	0	1	1	0	0	0	0	0	10235	768	27	0	6466	0	NBEAL1	2	204039941	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	2640075	204039941	39159432	109	6743											
DYTN	391475	broad.mit.edu	37	chr2	207527786	207527786	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagcaggaaccattttggGgatgtcctgcttcagtccct	10	11	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DYTN	NM_001093730	exon11	c.C1474A	p.P492T	TTTTGGGGATGTC		278	4	0.01	233	1	0.0042918455		168		0	0					T	207527786	G	T	207527786	3	4	96	1	0	0	0	0	1	0	0	0	4887	1232	43	3	270	3	DYTN	2	207527786	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3487845	207527786	35671587	110	6744											
FN1	2335	broad.mit.edu	37	chr2	216235100	216235100	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactatgacgttgtaggtgGcacctctggtgaggcctgtc	13	11	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FN1	NM_212482	exon41	c.C6770A	p.A2257D	TAGGTGGCACCTC		152	5	0.03	129	1	0.007751938		521		1275	0	0				T	216235100	G	T	216235100	3	4	96	1	0	0	0	0	1	0	0	0	5994	1203	42	2	687	2	FN1	2	216235100	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	8707314	216235100	26964273	111	6745											
STK36	27148	broad.mit.edu	37	chr2	219540116	219540116	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctgtactatctgcattcCcaccgcatcctacaccgaga	6	17	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	STK36	NM_015690	exon5	c.C354A	p.S118S	GCATTCCCACCGC		280	2	0.01	244	0	0		111		7	0	0				A	219540116	C	A	219540116	2	1	96	1	0	0	0	0	0	0	0	1	15357	610	22	3		3	STK36	2	219540116	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	3305016	219540116	23659257	112	6746											
MFF	56947	broad.mit.edu	37	chr2	228220439	228220439	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccattgaaggaacgtcagatGacctgactgttgtagatgca	11	8	1	5	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MFF	NM_020194	exon10	c.G859T	p.D287Y	TCAGATGACCTGA		190	3	0.02	194	0	0		48		447	1	0				T	228220439	G	T	228220439	3	4	96	1	0	0	0	0	1	0	0	0	9568	1290	45	3	889	3	MFF	2	228220439	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	8680323	228220439	14978934	113	6747											
HJURP	55355	broad.mit.edu	37	chr2	234750714	234750714	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagctgctgctactggtctCttgtagggagaggctgtcat	14	8	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	HJURP	NM_018410	exon8	c.G712T	p.E238X	TGGTCTCTTGTAG		121	4	0.03	152	0	0		72		98	0	0				A	234750714	C	A	234750714	4	1	96	1	0	0	0	0	0	1	0	0	7229	922	32	3	1542	3	HJURP	2	234750714	Nonsense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	6530275	234750714	8448659	114	6748											
IQCA1	79781	broad.mit.edu	37	chr2	237327829	237327829	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctttcttttgttttttgGctttcttgggttgtttttcc	7	7	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	IQCA1	NM_001270585	exon8	c.C1118T	p.A373V	TTTTTGGCTTTCT		736	6	0.01	669	1	0.0014947683		170		2	0	0				A	237327829	G	A	237327829	3	1	96	1	0	0	0	0	1	0	0	0	7845	1203	42	2	1419	2	IQCA1	2	237327829	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2577115	237327829	5871544	115	6749											
COL6A3	1293	broad.mit.edu	37	chr2	238271979	238271979	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaccctcgcccaaactccaGatgcattagccgctccaagt	6	16	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	COL6A3	NM_004369	exon14	c.C5980A	p.L1994M	ACTCCAGATGCAT		287	4	0.01	268	3	0.0111940299		608		32	0	0				T	238271979	G	T	238271979	3	4	96	1	0	0	0	0	1	0	0	0	3724	933	33	3	3677	3	COL6A3	2	238271979	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	944150	238271979	4927394	116	6750											
COL6A3	1293	broad.mit.edu	37	chr2	238296450	238296450	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cagtgctaccaccccgtagcGaatctcgtcactagaaggcc	9	15	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	COL6A3_ENST00000392004,NS,carcinoma,+1,2	COL6A3	NM_004369	exon4	c.C1087A	p.R363S	CGTAGCGAATCTC		111	3	0.03	87	1	0.0114942529		608	2	2	0	0				T	238296450	G	T	238296450	3	4	96	1	0	0	0	0	1	0	0	0	3724	1058	37	1	8657	1	COL6A3	2	238296450	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	24471	238296450	4902923	117	6751											
PER2	8864	mdanderson.org	37	chr2	239161833	239161833	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggaactcaggctgtgagGcagaggccatctcggatgtg	17	8	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_022817	exon19	c.C2831T	p.A944V	TGTGAGGCAGAGG		39	3	0.08	44	0	0				2	0	0				A	239161833	G	A	239161833	3	1	96	1	0	0	0	0	1	0	0	0	11776	1203	42	2	956	2	PER2	2	239161833	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	865383	239161833	4037540	118	6752											
SETMAR	6419	broad.mit.edu	37	chr3	4355265	4355266	+	Frame_Shift_Ins	INS	-	-	G													acaaagaaaggctagatcatINSgggaaactaaggaaaccttg					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SETMAR	NM_001276325	exon2	c.840_841insG	p.H280fs	AGATCATGGGAAA		375	5	0.01	226	0	0		30		11	0	0				G	4355266	-	G	4355265	7	5	96	1	0	1	1	0	0	0	0	0	14193	1461	51	0	846	0	SETMAR	3	4355265	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10		4355265	193667165	119	6753											
PPARG	5468	broad.mit.edu	37	chr3	12447553	12447554	+	Frame_Shift_Ins	INS	-	-	T													aagcaaaggcgagggcgatcINSttgacaggaaagacaacaga					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PPARG	NM_015869	exon5	c.792_793insT	p.I264fs	GGCGATCTTGACA		241	4	0.02	187	0	0		49		5	0	0				T	12447554	-	T	12447553	7	5	96	1	0	1	1	0	0	0	0	0	12343	903	32	0	810	0	PPARG	3	12447553	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	8092288	12447553	185574877	120	6754											
IQSEC1	9922	broad.mit.edu	37	chr3	12977109	12977109	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gatgactcggagctgcagttGatggtatcgttggagttgga	16	5	0	2	rs148022111	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	IQSEC1	NM_014869	exon3	c.C1449A	p.I483I	GCAGTTGATGGTA		152	5	0.03	125	2	0.016		88		5	0	0				T	12977109	G	T	12977109	2	4	96	1	0	0	0	0	0	0	0	1	7860	1280	45	3		3	IQSEC1	3	12977109	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	529556	12977109	185045321	121	6755											
ANKRD28	23243	broad.mit.edu	37	chr3	15731642	15731642	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaagctgcaagatctaggGgtgttcttccactactattt	8	8	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ANKRD28	NM_015199	exon18	c.C1757A	p.P586H	TCTAGGGGTGTTC		284	7	0.02	207	0	0		121		21	0	0				T	15731642	G	T	15731642	3	4	96	1	0	0	0	0	1	0	0	0	652	1232	43	3	1448	3	ANKRD28	3	15731642	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2754533	15731642	182290788	122	6756											
ARPP21	10777	broad.mit.edu	37	chr3	35834022	35834022	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaacaatgtcttcttatcaGgtgctcataagcagcttgga	8	10	4	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ARPP21	NM_001267619	exon18	c.G2184T	p.Q728H	TTATCAGGTGCTC		326	3	0.01	224	0	0		153		0	0					T	35834022	G	T	35834022	5	4	96	1	0	0	0	0	0	0	1	0	977	1014	35	3	2260	3	ARPP21	3	35834022	Splice_Site	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	20102380	35834022	162188408	123	6757											
DCLK3	85443	broad.mit.edu	37	chr3	36779862	36779863	+	Frame_Shift_Ins	INS	-	-	C													tctggctcccatttccccctINScccccacttcttctgggtcc					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	DCLK3,NS,carcinoma,+2,1	DCLK3	NM_033403	exon2	c.289_290insG	p.R97fs	TCCCCCTCCCCCA		287	6	0.02	173	0	0		95	1	4	0	0				C	36779863	-	C	36779862	7	5	96	1	0	1	1	0	0	0	0	0	4316	1550	54	0	1673	0	DCLK3	3	36779862	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	945840	36779862	161242568	124	6758											
ZNF35	7584	broad.mit.edu	37	chr3	44694153	44694153	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttaccagggactctggccaaGagtgagatactggagactca	12	9	2	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZNF35	NM_003420	exon3	c.G297T	p.K99N	GGCCAAGAGTGAG		159	3	0.02	120	0	0		34		12	0	0				T	44694153	G	T	44694153	3	4	96	1	0	0	0	0	1	0	0	0	17918	933	33	3	303	3	ZNF35	3	44694153	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	7914291	44694153	153328277	125	6759											
KIF15	56992	broad.mit.edu	37	chr3	44828007	44828007	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taagggagcatatcaagaagGgagtctttgttgttggtgcg	15	4	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KIF15	NM_020242	exon7	c.G580T	p.G194X	AAGAAGGGAGTCT		229	4	0.02	164	0	0		103		10	0	0				T	44828007	G	T	44828007	4	4	96	1	0	0	0	0	0	1	0	0	8318	1233	43	3	606	3	KIF15	3	44828007	Nonsense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	133854	44828007	153194423	126	6760											
ALS2CL	259173	broad.mit.edu	37	chr3	46713682	46713682	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaacacttgtccctgaccaGggagtacctctgcatggtgg	12	11	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ALS2CL	NM_001190707	exon23	c.C2482A	p.L828M	TGACCAGGGAGTA		286	4	0.01	158	0	0		78		18	0	0				T	46713682	G	T	46713682	3	4	96	1	0	0	0	0	1	0	0	0	547	991	35	3	395	3	ALS2CL	3	46713682	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1885675	46713682	151308748	127	6761											
CCDC12	151903	broad.mit.edu	37	chr3	47018230	47018230	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tagttgcctccatcttgcccGcgtacgcccctccttttctc	6	18	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CCDC12	NM_144716	exon2	c.A32T	p.E11V	TTGCCCGCGTACG		151	4	0.03	88	0	0		9		49	1	0.02				A	47018230	G	A	47018230	3	1	96	1	0	0	0	0	1	0	0	0	2773	1087	38	1	535	1	CCDC12	3	47018230	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	304548	47018230	151004200	128	6762											
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu	37	chr3	47045654	47045656	+	In_Frame_Del	DEL	TCT	TCT	-													gcgccgttcagcacttgagcTcttctttatcgatcaggcca					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	TCT	TCT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NBEAL2	NM_015175	exon37	c.5968_5970del	p.1990_1990del	TTGAGCTCTTCTT		163	13	0.08	113	0	0		267		35	0	0				-	47045656	TCT	-	47045654	7	5	96	1	0	1	0	1	0	0	0	0	10236	1551	54	0	6115	0	NBEAL2	3	47045654	In_Frame_Del	DEL	TCT	TCGA-VF-A8A8-01A-11D-A435-10	27424	47045654	150976776	129	6763											
NCKIPSD	51517	broad.mit.edu	37	chr3	48717114	48717114	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cacatggcgccaaagcacttGaggagcagcagccgcagtga	13	12	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NCKIPSD	NM_016453	exon8	c.C1383A	p.L461L	GCACTTGAGGAGC		207	6	0.03	155	1	0.0064516129		52		71	1	0.01				T	48717114	G	T	48717114	2	4	96	1	0	0	0	0	0	0	0	1	10271	1277	45	3		3	NCKIPSD	3	48717114	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1671460	48717114	149305316	130	6764											
USP19	10869	broad.mit.edu	37	chr3	49146487	49146487	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacaaagtaccggaggcaGccctcatctggtgtggtagg	15	9	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	USP19	NM_001199160	exon27	c.C4164A	p.G1388G	GAGGCAGCCCTCA		328	5	0.02	215	2	0.0093023256		158		18	0	0				T	49146487	G	T	49146487	2	4	96	1	0	0	0	0	0	0	0	1	17109	958	34	2		2	USP19	3	49146487	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	429373	49146487	148875943	131	6765											
LAMB2	3913	broad.mit.edu	37	chr3	49162818	49162818	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccactggccacgctggcagCggtcacagcgaagcccaaag	12	16	1	0	rs146326783	bycluster;byfrequency	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	LAMB2	NM_002292	exon19	c.G2588A	p.R863H	TGGCAGCGGTCAC		313	3	0.01	161	0	0		156		15	0	0				T	49162818	C	T	49162818	3	4	96	1	0	0	0	0	1	0	0	0	8649	768	27	1	2864	1	LAMB2	3	49162818	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	16331	49162818	148859612	132	6766											
BSN	8927	broad.mit.edu	37	chr3	49690876	49690876	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttctaaatgctgagagtgCatacatggacccaatgaagc	10	8	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	BSN	NM_003458	exon5	c.C3887T	p.A1296V	AGAGTGCATACAT		275	9	0.03	191	5	0.0261780105		272		0	0					T	49690876	C	T	49690876	3	4	96	1	0	0	0	0	1	0	0	0	1532	710	25	2	3905	2	BSN	3	49690876	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	528058	49690876	148331554	133	6767											
SEMA3F	6405	broad.mit.edu	37	chr3	50211240	50211240	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacagagctgaaggccacaGgcaccgcccacttcttcaac	8	17	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SEMA3F	NM_004186	exon3	c.G127T	p.G43C	GCCACAGGCACCG		191	5	0.03	109	0	0		62		2	0	0				T	50211240	G	T	50211240	3	4	96	1	0	0	0	0	1	0	0	0	14082	1000	35	3	133	3	SEMA3F	3	50211240	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	520364	50211240	147811190	134	6768											
STAB1	23166	broad.mit.edu	37	chr3	52539151	52539151	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccccctctgggacccctgggGatcccaaggtgagccagcat	12	16	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	STAB1,NS,malignant_melanoma,0,1	STAB1	NM_015136	exon13	c.G1510T	p.D504Y	CCTGGGGATCCCA		209	5	0.02	175	0	0		178	1	0	0					T	52539151	G	T	52539151	3	4	96	1	0	0	0	0	1	0	0	0	15292	1174	41	3	1560	3	STAB1	3	52539151	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2327911	52539151	145483279	135	6769											
IL17RB	55540	broad.mit.edu	37	chr3	53889325	53889325	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcattcaaatttccaggctgCctagaccacataatgaaata	5	10	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	IL17RB	NM_018725	exon6	c.C486T	p.C162C	AGGCTGCCTAGAC		322	4	0.01	226	0	0		27		2	0	0				T	53889325	C	T	53889325	2	4	96	1	0	0	0	0	0	0	0	1	7683	747	26	2		2	IL17RB	3	53889325	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	1350174	53889325	144133105	136	6770											
SLMAP	7871	broad.mit.edu	37	chr3	57857388	57857388	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgctttcaaagagtggcggGgactgcacttttattcatca	10	8	3	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLMAP	NM_007159	exon11	c.G1161T	p.G387G	TGGCGGGGACTGC		263	3	0.01	198	1	0.0050505051		46		0	0					T	57857388	G	T	57857388	2	4	96	1	0	0	0	0	0	0	0	1	14802	1219	43	3		3	SLMAP	3	57857388	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3968063	57857388	140165042	137	6771											
DNASE1L3	1776	broad.mit.edu	37	chr3	58183671	58183671	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttcttggggacgtagctgCagccggcattgaagtcaccc	12	13	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DNASE1L3	NM_004944	exon6	c.G581A	p.C194Y	TAGCTGCAGCCGG		204	4	0.02	125	1	0.008		36		0	0					T	58183671	C	T	58183671	3	4	96	1	0	0	0	0	1	0	0	0	4690	710	25	2	348	2	DNASE1L3	3	58183671	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	326283	58183671	139838759	138	6772											
KBTBD8	84541	broad.mit.edu	37	chr3	67054481	67054481	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaatgatttctggatgtatGatcattccaccaatagatgg	8	6	2	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KBTBD8	NM_032505	exon3	c.G1090C	p.D364H	ATGTATGATCATT		201	5	0.02	159	0	0		101		4	0	0				C	67054481	G	C	67054481	3	2	96	1	0	0	0	0	1	0	0	0	8042	1290	45	5	1100	5	KBTBD8	3	67054481	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	8870810	67054481	130967949	139	6773											
OR5H1	26341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	97852456	97852456	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttcattcacaaaaatgttAaaaaaacatgttaaggtttc	5	5	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001005338	exon1	c.A915C	p.L305F	AATGTTAAAAAAA		133	21	0.16	90	0	0				0	0					C	97852456	A	C	97852456	3	2	96	1	0	0	0	0	1	0	0	0	11205	359	13	4	917	4	OR5H1	3	97852456	Missense_Mutation	SNP	A	TCGA-VF-A8A8-01A-11D-A435-10	30797975	97852456	100169974	140	6774											
TFG	10342	broad.mit.edu	37	chr3	100455557	100455558	+	Frame_Shift_Ins	INS	-	-	A													gactcaagcaggtcagattgINSaaggtaaaatagagtttaga					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TFG	NM_001007565	exon6	c.718_719insA	p.E240fs	CAGATTGAAGGTA		292	7	0.02	170	0	0		42		197	0	0				A	100455558	-	A	100455557	7	5	96	1	0	1	1	0	0	0	0	0	15865	1291	45	0	736	0	TFG	3	100455557	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	2603101	100455557	97566873	141	6775											
NFKBIZ	64332	broad.mit.edu	37	chr3	101574033	101574033	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgtgtgtgctgagaaggGccactcccaggtgcttcagg	15	10	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NFKBIZ	NM_031419	exon7	c.G1571T	p.G524V	AGAAGGGCCACTC		271	3	0.01	184	1	0.0054347826		55		0	0					T	101574033	G	T	101574033	3	4	96	1	0	0	0	0	1	0	0	0	10429	1203	42	2	1597	2	NFKBIZ	3	101574033	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1118476	101574033	96448397	142	6776											
ATP6V1A	523	broad.mit.edu	37	chr3	113513972	113513972	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctatcttggtgcccgtctgGcctcgttttatgaacgagca	10	12	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ATP6V1A	NM_001690	exon10	c.G1147T	p.A383S	CGTCTGGCCTCGT		168	6	0.04	129	1	0.007751938		71		11	0	0				T	113513972	G	T	113513972	3	4	96	1	0	0	0	0	1	0	0	0	1175	1203	42	2	1181	2	ATP6V1A	3	113513972	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	11939939	113513972	84508458	143	6777											
ZNF80	7634	broad.mit.edu	37	chr3	113956064	113956064	+	Translation_Start_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttgtggtgagtgttacaGctcttaaggtggcgcgtcta	13	9	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZNF80	.	.	.	.	GTTACAGCTCTTA		72	3	0.04	43	0	0		75		0	0					T	113956064	G	T	113956064	1	4	96	1	0	0	0	0	0	0	0	0	18216	986	34	2		2	ZNF80	3	113956064	Translation_Start_Site	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	442092	113956064	84066366	144	6778											
STXBP5L	9515	broad.mit.edu	37	chr3	120764286	120764286	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctttttgttctagggtgCcttggtcagtgcaagttcag	11	8	4	0	rs375292809		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	STXBP5L,colon,carcinoma,0,2	STXBP5L	NM_014980	exon5	c.C374T	p.A125V	AGGGTGCCTTGGT		282	4	0.01	202	0	0		159	2	0	0					T	120764286	C	T	120764286	3	4	96	1	0	0	0	0	1	0	0	0	15412	739	26	2	388	2	STXBP5L	3	120764286	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	6808222	120764286	77258144	145	6779											
POLQ	10721	broad.mit.edu	37	chr3	121207058	121207058	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcttggacaggaaatatatCcacattgtccaaagcttcaa	6	10	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	POLQ	NM_199420	exon16	c.G4720T	p.D1574Y	ATATATCCACATT		137	5	0.04	90	0	0		273		3	0	0				A	121207058	C	A	121207058	3	1	96	1	0	0	0	0	1	0	0	0	12255	855	30	3	3112	3	POLQ	3	121207058	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	442772	121207058	76815372	146	6780											
CASR	846	broad.mit.edu	37	chr3	121980486	121980486	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgccatggcagacatcatcGagtatttccgctggaactgg	11	11	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CASR	NM_001178065	exon4	c.G604T	p.E202X	ATCATCGAGTATT		249	5	0.02	169	2	0.0118343195		190		0	0					T	121980486	G	T	121980486	4	4	96	1	0	0	0	0	0	1	0	0	2700	1059	37	1	614	1	CASR	3	121980486	Nonsense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	773428	121980486	76041944	147	6781											
KPNA1	3836	broad.mit.edu	37	chr3	122168466	122168466	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atactcccgcatcgatgaccGcttgaattttatcattgggt	8	10	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KPNA1	NM_002264	exon9	c.C872T	p.A291V	ATGACCGCTTGAA		495	4	0.01	371	2	0.0053908356		42		49	0	0				A	122168466	G	A	122168466	3	1	96	1	0	0	0	0	1	0	0	0	8471	1087	38	1	768	1	KPNA1	3	122168466	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	187980	122168466	75853964	148	6782											
ADCY5	111	broad.mit.edu	37	chr3	123010141	123010141	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcgggccaggaagtgagcgGccacgtccttgggcaggatg	18	11	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ADCY5	NM_183357	exon18	c.C3146A	p.A1049D	TGAGCGGCCACGT		355	8	0.02	216	1	0.0046296296		169		28	0	0				T	123010141	G	T	123010141	3	4	96	1	0	0	0	0	1	0	0	0	296	1203	42	2	655	2	ADCY5	3	123010141	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	841675	123010141	75012289	149	6783											
ITGB5	3693	broad.mit.edu	37	chr3	124592308	124592308	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catacctctttggagcaccaGgcacattttgggtggattag	11	9	1	0	rs200795031	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ITGB5	NM_002213	exon2	c.C141A	p.A47A	GCACCAGGCACAT		264	3	0.01	160	0	0		66		85	0	0				T	124592308	G	T	124592308	2	4	96	1	0	0	0	0	0	0	0	1	7941	987	35	3		3	ITGB5	3	124592308	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1582167	124592308	73430122	150	6784											
RAB7A	7879	broad.mit.edu	37	chr3	128516833	128516833	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatgtgaataagaaattcaGcaatcagtacaaagccacaa	7	7	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RAB7A	NM_004637	exon3	c.G101T	p.S34I	AATTCAGCAATCA		302	5	0.02	242	0	0		17		769	0	0				T	128516833	G	T	128516833	3	4	96	1	0	0	0	0	1	0	0	0	13005	971	34	2	107	2	RAB7A	3	128516833	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3924525	128516833	69505597	151	6785											
TMCC1	23023	broad.mit.edu	37	chr3	129370502	129370502	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaaggactgccatgacaGccaggaggatgttgatgagt	13	8	0	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TMCC1	NM_001017395	exon6	c.C1784A	p.A595D	ATGACAGCCAGGA		191	3	0.02	156	0	0		105		22	0	0				T	129370502	G	T	129370502	3	4	96	1	0	0	0	0	1	0	0	0	16051	971	34	2	181	2	TMCC1	3	129370502	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	853669	129370502	68651928	152	6786											
COL6A5	256076	broad.mit.edu	37	chr3	130107651	130107651	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aatttctgatgcaatagataGaatgtctctcatcaatgaag	7	6	4	4	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	COL6A5	NM_153264	exon6	c.G2090T	p.R697I	TAGATAGAATGTC		225	3	0.01	158	2	0.0126582278		205		0	0					T	130107651	G	T	130107651	3	4	96	1	0	0	0	0	1	0	0	0	3725	942	33	3	2108	3	COL6A5	3	130107651	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	737149	130107651	67914779	153	6787											
DNAJC13	23317	broad.mit.edu	37	chr3	132202314	132202314	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacttcagtccataccccaGcttaagtggtgtctcttagc	7	14	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DNAJC13	NM_015268	exon28	c.G3075T	p.Q1025H	ACCCCAGCTTAAG		284	4	0.01	196	0	0		253		5	0	0				T	132202314	G	T	132202314	3	4	96	1	0	0	0	0	1	0	0	0	4659	962	34	2	3181	2	DNAJC13	3	132202314	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2094663	132202314	65820116	154	6788											
TOPBP1	11073	broad.mit.edu	37	chr3	133327786	133327786	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatccacatgtaaaataacCttccacccactaaatgctcc	3	14	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TOPBP1	NM_007027	exon26	c.G4194T	p.K1398N	AATAACCTTCCAC		593	5	0.01	392	0	0		218		171	0	0				A	133327786	C	A	133327786	3	1	96	1	0	0	0	0	1	0	0	0	16429	680	24	3	386	3	TOPBP1	3	133327786	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	1125472	133327786	64694644	155	6789											
ESYT3	83850	broad.mit.edu	37	chr3	138191495	138191495	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgccaaaaggttctgtgaGcccatcggggagaagaagag	15	7	1	4	rs372734965		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ESYT3	NM_031913	exon18	c.G2031T	p.E677D	CTGTGAGCCCATC		207	3	0.01	118	0	0		64		15	0	0				T	138191495	G	T	138191495	3	4	96	1	0	0	0	0	1	0	0	0	5294	962	34	2	2101	2	ESYT3	3	138191495	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	4863709	138191495	59830935	156	6790											
CEP70	80321	broad.mit.edu	37	chr3	138219304	138219305	+	Frame_Shift_Ins	INS	-	-	T													tctccaagcctagtataaacINSttcattcattcggggataga					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CEP70	NM_024491	exon15	c.1474_1475insA	p.V492fs	TATAAACTTCATT		519	7	0.01	349	0	0		51		102	0	0				T	138219305	-	T	138219304	7	5	96	1	0	1	1	0	0	0	0	0	3281	565	20	0	335	0	CEP70	3	138219304	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	27809	138219304	59803126	157	6791											
RASA2	5922	broad.mit.edu	37	chr3	141235273	141235273	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaaagagatctccgtataGgtatgtactattcataatta	6	6	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RASA2	NM_006506	exon3	c.G355T	p.G119X	CGTATAGGTATGT		274	6	0.02	181	1	0.0055248619		169		0	0					T	141235273	G	T	141235273	5	4	96	1	0	0	0	0	0	0	1	0	13112	1014	35	3	365	3	RASA2	3	141235273	Splice_Site	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3015969	141235273	56787157	158	6792											
PLS1	5357	broad.mit.edu	37	chr3	142403123	142403123	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcattgttaaatgaaggtgaGgaactagaggagctgatgaa	14	3	0	5	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PLS1	NM_001172312	exon8	c.G774T	p.E258D	AGGTGAGGAACTA		304	4	0.01	215	0	0		71		12	0	0				T	142403123	G	T	142403123	3	4	96	1	0	0	0	0	1	0	0	0	12154	991	35	3	800	3	PLS1	3	142403123	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1167850	142403123	55619307	159	6793											
PLOD2	5352	broad.mit.edu	37	chr3	145788627	145788627	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcgtggtgactcaatagaGcaattgtaccttagaaattt	8	6	1	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PLOD2	NM_182943	exon20	c.C2154A	p.C718X	AATAGAGCAATTG		645	6	0.01	483	0	0		81		178	0	0				T	145788627	G	T	145788627	4	4	96	1	0	0	0	0	0	1	0	0	12149	963	34	2	126	2	PLOD2	3	145788627	Nonsense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3385504	145788627	52233803	160	6794											
PLSCR4	57088	broad.mit.edu	37	chr3	145914479	145914480	+	Frame_Shift_Ins	INS	-	-	T													gcccacgaactctcatcacaINSttttctttcttctcattttg					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PLSCR4	NM_001128304	exon9	c.726_727insA	p.N242fs	CATCACATTTTCT		514	4	0.01	349	0	0		44		3	0	0				T	145914480	-	T	145914479	7	5	96	1	0	1	1	0	0	0	0	0	12159	214	8	0	275	0	PLSCR4	3	145914479	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	125852	145914479	52107951	161	6795											
PFN2	5217	broad.mit.edu	37	chr3	149686177	149686178	+	Frame_Shift_Ins	INS	-	-	T													gccgacagccacattgtatgINSttggctccccaccttgactc					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PFN2	NM_002628	exon2	c.293_294insA	p.T98fs	TTGTATGTTGGCT		328	5	0.02	235	0	0		23		450	0	0				T	149686178	-	T	149686177	7	5	96	1	0	1	1	0	0	0	0	0	11815	1377	48	0	239	0	PFN2	3	149686177	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	3771698	149686177	48336253	162	6796											
P2RY1	5028	broad.mit.edu	37	chr3	152554612	152554612	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagcttctagaagaagtgaGgcaaatttgcaatccaagag	10	6	1	4	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	P2RY1	NM_002563	exon1	c.G1041T	p.E347D	AAGTGAGGCAAAT		161	3	0.02	125	2	0.016		49		4	0	0				T	152554612	G	T	152554612	3	4	96	1	0	0	0	0	1	0	0	0	11392	991	35	3	1043	3	P2RY1	3	152554612	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2868435	152554612	45467818	163	6797											
TRIM59	286827	broad.mit.edu	37	chr3	160156583	160156583	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cactttgaaggtcatctataGgatgaccatgatgttgacct	9	8	2	4	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TRIM59	NM_173084	exon3	c.C389A	p.P130H	TCTATAGGATGAC		175	4	0.02	115	0	0		42		12	0	0				T	160156583	G	T	160156583	3	4	96	1	0	0	0	0	1	0	0	0	16592	1000	35	3	826	3	TRIM59	3	160156583	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	7601971	160156583	37865847	164	6798											
PRKCI	5584	broad.mit.edu	37	chr3	170009712	170009713	+	Frame_Shift_Ins	INS	-	-	A													tacattgctcctgaaattttINSaagaggagaagattatggta					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PRKCI	NM_002740	exon13	c.1274_1275insA	p.L425fs	AAATTTTAAGAGG		547	4	0.01	388	0	0		82		27	0	0				A	170009713	-	A	170009712	7	5	96	1	0	1	1	0	0	0	0	0	12565	1764	61	0	1324	0	PRKCI	3	170009712	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	9853129	170009712	28012718	165	6799											
ABCC5	10057	broad.mit.edu	37	chr3	183670921	183670921	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caaccaccaggtgctgaaggCggtgctgcctacattcagca	11	13	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ABCC5	NM_005688	exon18	c.G2620A	p.A874T	TGAAGGCGGTGCT		232	5	0.02	153	0	0		142		22	0	0				T	183670921	C	T	183670921	3	4	96	1	0	0	0	0	1	0	0	0	56	768	27	1	1745	1	ABCC5	3	183670921	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	13661209	183670921	14351509	166	6800											
VPS8	23355	broad.mit.edu	37	chr3	184580796	184580796	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agatctcagaagttcagctgGtctacaatagcagccatttc	8	10	3	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	VPS8	NM_001009921	exon15	c.G1336T	p.V446F	CAGCTGGTCTACA		166	5	0.03	104	0	0		109		1	0	0				T	184580796	G	T	184580796	3	4	96	1	0	0	0	0	1	0	0	0	17277	1261	44	3	1390	3	VPS8	3	184580796	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	909875	184580796	13441634	167	6801											
HRG	3273	broad.mit.edu	37	chr3	186394998	186394998	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atggacccccacctcctccaGatgaaagagatcactcacat	6	15	2	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	HRG	NM_000412	exon7	c.G904T	p.D302Y	CCTCCAGATGAAA		547	4	0.01	287	1	0.0034843206		81		1	0	0				T	186394998	G	T	186394998	3	4	96	1	0	0	0	0	1	0	0	0	7394	942	33	3	930	3	HRG	3	186394998	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1814202	186394998	11627432	168	6802											
MUC4	4585	broad.mit.edu	37	chr3	195508959	195508959	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acaggaagaggggtggcctgAcctgtggatgctgaggaagt	18	6	0	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4	NM_018406	exon2	c.T9492A	p.G3164G	GGCCTGACCTGTG		82	4	0.05	66	1	0.0151515152		1505	1	10	0	0				T	195508959	A	T	195508959	2	4	96	1	0	0	0	0	0	0	0	1	10025	262	10	5		5	MUC4	3	195508959	Silent	SNP	A	TCGA-VF-A8A8-01A-11D-A435-10	9113961	195508959	2513471	169	6803											
PDE6B	5158	broad.mit.edu	37	chr4	619638	619638	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagcatcaacatggagcgcGtggtcttcaaggtcctgcgg	14	10	3	1	rs376238566		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PDE6B	NM_001145291	exon1	c.G223A	p.V75M	GAGCGCGTGGTCT		129	3	0.02	122	0	0		80		1	0	0				A	619638	G	A	619638	3	1	96	1	0	0	0	0	1	0	0	0	11692	1145	40	1	225	1	PDE6B	4	619638	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10		619638	190534638	170	6804											
PDE6B	5158	broad.mit.edu;bcgsc.ca	37	chr4	656329	656329	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagagctactacacggaccTggaggccttcgccatggtga	13	11	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PDE6B	NM_001145291	exon14	c.T1754C	p.L585P	CGGACCTGGAGGC		116	8	0.07	110	0	0		80		10	0	0				C	656329	T	C	656329	3	2	96	1	0	0	0	0	1	0	0	0	11692	1580	55	4	1808	4	PDE6B	4	656329	Missense_Mutation	SNP	T	TCGA-VF-A8A8-01A-11D-A435-10	36691	656329	190497947	171	6805											
FGFR3	2261	mdanderson.org	37	chr4	1804666	1804666	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gatcagtgagagtgtggaggCcgacgtgcgcctccgcctgg	17	11	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001163213	exon8	c.C956A	p.A319D	TGGAGGCCGACGT		56	3	0.05	60	0	0				15	0	0				A	1804666	C	A	1804666	3	1	96	1	0	0	0	0	1	0	0	0	5899	739	26	2	982	2	FGFR3	4	1804666	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	1148337	1804666	189349610	172	6806											
ADD1	118	broad.mit.edu	37	chr4	2896372	2896372	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaatctgggagtgaatcagGccggcttcaccttacactct	9	12	4	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	ADD1,NS,carcinoma,-2,1	ADD1	NM_014190	exon6	c.G655T	p.A219S	AATCAGGCCGGCT		286	4	0.01	335	0	0		56	1	31	0	0				T	2896372	G	T	2896372	3	4	96	1	0	0	0	0	1	0	0	0	303	1203	42	2	673	2	ADD1	4	2896372	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1091706	2896372	188257904	173	6807											
SEL1L3	23231	broad.mit.edu	37	chr4	25769163	25769163	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ataccaaaggaaggagcatcGatttgaaaaacagagaaatt	9	5	0	2	rs182680181	bycluster;by1000genomes;alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	SEL1L3,NS,carcinoma,0,4	SEL1L3	NM_015187	exon19	c.C2829A	p.I943I	AGCATCGATTTGA		331	7	0.02	403	5	0.0124069479		62	4	19	0	0				T	25769163	G	T	25769163	2	4	96	1	0	0	0	0	0	0	0	1	14065	1048	37	1		1	SEL1L3	4	25769163	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	22872791	25769163	165385113	174	6808											
N4BP2	55728	broad.mit.edu	37	chr4	40123092	40123092	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaataaagatattatttggGccacaagccttttgttggat	9	6	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	N4BP2	NM_018177	exon9	c.G3361T	p.A1121S	ATTTGGGCCACAA		257	3	0.01	278	0	0		166		2	0	0				T	40123092	G	T	40123092	3	4	96	1	0	0	0	0	1	0	0	0	10157	1203	42	2	3387	2	N4BP2	4	40123092	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	14353929	40123092	151031184	175	6809											
GABRA4	2557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	46994860	46994860	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catacccccaaatccaggacGcagcctgttgtcataaccat	6	15	1	0	rs201606797	by1000genomes	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_000809	exon2	c.C190T	p.R64C	CAGGACGCAGCCT		186	72	0.39	184	0	0	0			0	0					A	46994860	G	A	46994860	3	1	96	1	0	0	0	0	1	0	0	0	6197	1087	38	1	1506	1	GABRA4	4	46994860	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	6871768	46994860	144159416	176	6810											
EPHA5	2044	broad.mit.edu	37	chr4	66217148	66217148	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggatcatcttccagtacccGggaaagtccaaagtcagaca	10	11	3	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	EPHA5,NS,other,0,1	EPHA5	NM_004439	exon14	c.C2467A	p.R823R	GTACCCGGGAAAG		172	4	0.02	170	0	0		315	1	0	0					T	66217148	G	T	66217148	2	4	96	1	0	0	0	0	0	0	0	1	5198	1115	39	1		1	EPHA5	4	66217148	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	19222288	66217148	124937128	177	6811											
RUFY3	22902	broad.mit.edu	37	chr4	71659525	71659525	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgccaggctgagcgaagccGccaatctgctgagttggaca	14	12	1	2	rs376846064		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RUFY3	NM_001037442	exon13	c.G1361A	p.R454H	GAAGCCGCCAATC		314	7	0.02	304	1	0.0032894737		61		24	0	0				A	71659525	G	A	71659525	3	1	96	1	0	0	0	0	1	0	0	0	13791	1087	38	1	1854	1	RUFY3	4	71659525	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	5442377	71659525	119494751	178	6812											
SHROOM3	57619	broad.mit.edu	37	chr4	77677789	77677789	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctcttggtgggcagccaGcacccatccagactcaaagc	11	14	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SHROOM3	NM_020859	exon8	c.G4897T	p.A1633S	CAGCCAGCACCCA		247	3	0.01	235	0	0		134		14	0	0				T	77677789	G	T	77677789	3	4	96	1	0	0	0	0	1	0	0	0	14349	971	34	2	4927	2	SHROOM3	4	77677789	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	6018264	77677789	113476487	179	6813											
AGPAT9	84803	broad.mit.edu	37	chr4	84518594	84518594	+	Frame_Shift_Del	DEL	A	A	-													cccttgcaggaacttgcatcAacaatacttcagtcatgatg					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	AGPAT9,NS,carcinoma,-1,1	AGPAT9	NM_001256421	exon10	c.922delA	p.N308fs	TGCATCAACAATA		767	10	0.01	787	0	0		41	1	7	0	0				-	84518594	A	-	84518594	7	5	96	1	0	1	0	1	0	0	0	0	389	130	5	0	956	0	AGPAT9	4	84518594	Frame_Shift_Del	DEL	A	TCGA-VF-A8A8-01A-11D-A435-10	6840805	84518594	106635682	180	6814											
SNCA	0	broad.mit.edu	37	chr4	90743449	90743449	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggctgctgcaatgctccctGctccctccactgtcttctgg	9	16	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SNCA	NM_000345	exon4	c.C254T	p.A85V	CTCCCTGCTCCCT		146	4	0.03	186	0	0		17		40	0	0				A	90743449	G	A	90743449	3	1	96	1	0	0	0	0	1	0	0	0	14893	1319	46	2	180	2	SNCA	4	90743449	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	6224855	90743449	100410827	181	6815											
CYP2U1	113612	broad.mit.edu	37	chr4	108868567	108868567	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaattgaaagagtcattggcGccaaccgagctccttccctc	8	13	1	2	rs138968113	bycluster;byfrequency;alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CYP2U1	NM_183075	exon3	c.G1162T	p.A388S	ATTGGCGCCAACC		247	3	0.01	240	1	0.0041666667		20		11	0	0				T	108868567	G	T	108868567	3	4	96	1	0	0	0	0	1	0	0	0	4198	1087	38	1	1172	1	CYP2U1	4	108868567	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	18125118	108868567	82285709	182	6816											
KIAA1109	84162	broad.mit.edu	37	chr4	123249484	123249484	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	aagatgaagaccatgagaggGaaaggttttatatttacagg	12	3	0	4	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KIAA1109	NM_015312	exon64	c.G11221T	p.E3741X	GAGAGGGAAAGGT		112	4	0.04	118	1	0.0084745763		424		0	0					T	123249484	G	T	123249484	4	4	96	1	0	0	0	0	0	1	0	0	8249	1175	41	3	11475	3	KIAA1109	4	123249484	Nonsense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	14380917	123249484	67904792	183	6817											
ADAD1	132612	broad.mit.edu	37	chr4	123304995	123304995	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgccttttgtgctgtggtgGatggtattcagtacaagact	12	6	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ADAD1	NM_139243	exon5	c.G403T	p.D135Y	GTGGTGGATGGTA		288	2	0.01	263	6	0.0228136882		94		0	0					T	123304995	G	T	123304995	3	4	96	1	0	0	0	0	1	0	0	0	230	1174	41	3	413	3	ADAD1	4	123304995	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	55511	123304995	67849281	184	6818											
SLC25A31	83447	broad.mit.edu	37	chr4	128665844	128665844	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taggtttcttcagtttttggCgtggcaatttggcaaatgtt	11	5	2	0	rs369621147		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLC25A31	NM_031291	exon2	c.C250T	p.R84C	TTTTGGCGTGGCA		183	4	0.02	198	3	0.0151515152		42		0	0					T	128665844	C	T	128665844	3	4	96	1	0	0	0	0	1	0	0	0	14549	768	27	1	256	1	SLC25A31	4	128665844	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	5360849	128665844	62488432	185	6819											
UCP1	7350	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	141483480	141483480	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggggaggacatagctgttgCgcaaaatccagcgataagag	14	8	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	UCP1	NM_021833	exon5	c.G676A	p.A226T	CTGTTGCGCAAAA		130	28	0.22	122	1	0.0081967213		33		3	1	0.33				T	141483480	C	T	141483480	3	4	96	1	0	0	0	0	1	0	0	0	16989	768	27	1	253	1	UCP1	4	141483480	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	12817636	141483480	49670796	186	6820											
PPID	5481	broad.mit.edu	37	chr4	159630976	159630976	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcaattctgcctggataGctgtaaaataaatatgcaat	7	7	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PPID	NM_005038	exon10	c.C1025A	p.A342D	TGGATAGCTGTAA		78	3	0.04	79	0	0		22		230	0	0				T	159630976	G	T	159630976	5	4	96	1	0	0	0	0	0	0	1	0	12369	985	34	2	91	2	PPID	4	159630976	Splice_Site	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	18147496	159630976	31523300	187	6821											
RAPGEF2	9693	broad.mit.edu	37	chr4	160273959	160273959	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cagtgccagtctcactgcacGatgagaggcgccagaggcat	13	12	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RAPGEF2	NM_014247	exon21	c.G3505T	p.D1169Y	CTGCACGATGAGA		205	6	0.03	212	2	0.0094339623		171		10	0	0				T	160273959	G	T	160273959	3	4	96	1	0	0	0	0	1	0	0	0	13095	1058	37	1	3587	1	RAPGEF2	4	160273959	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	642983	160273959	30880317	188	6822											
DDX60	55601	broad.mit.edu	37	chr4	169208307	169208307	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctttgatacggtattccagaGatattcataatctttcataa	5	7	3	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DDX60	NM_017631	exon10	c.C1231A	p.L411I	TCCAGAGATATTC		261	4	0.02	280	0	0		304		1	0	0				T	169208307	G	T	169208307	3	4	96	1	0	0	0	0	1	0	0	0	4401	942	33	3	4023	3	DDX60	4	169208307	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	8934348	169208307	21945969	189	6823											
TRIP13	9319	mdanderson.org	37	chr5	893199	893199	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtggaggtgcatcagcgcgGcagcaggtgagccggacctg	18	11	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001166260	exon1	c.G86T	p.G29V	AGCGCGGCAGCAG		28	3	0.11	26	0	0				21	0	0				T	893199	G	T	893199	3	4	96	1	0	0	0	0	1	0	0	0	16617	1203	42	2	88	2	TRIP13	5	893199	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10		893199	180022061	190	6824											
PDZD2	23037	broad.mit.edu	37	chr5	32098547	32098547	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatttccttctgtcagtcaaCggcgcctcactggctggctt	10	13	4	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PDZD2	NM_178140	exon22	c.C8025T	p.N2675N	AGTCAACGGCGCC		119	4	0.03	118	0	0		306		6	0	0				T	32098547	C	T	32098547	2	4	96	1	0	0	0	0	0	0	0	1	11747	535	19	1		1	PDZD2	5	32098547	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	31205348	32098547	148816713	191	6825											
NPR3	0	broad.mit.edu	37	chr5	32789680	32789680	+	Frame_Shift_Del	DEL	C	C	-													aacacctccttttctcctttCtcttaaattcaaagacgttt					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NPR3	.	.	.	.	TCCTTTCTCTTAA		287	7	0.02	298	0	0		65		0	0					-	32789680	C	-	32789680	7	5	96	1	0	1	0	1	0	0	0	0	10643	913	32	0		0	NPR3	5	32789680	Frame_Shift_Del	DEL	C	TCGA-VF-A8A8-01A-11D-A435-10	691133	32789680	148125580	192	6826											
ADAMTS12	81792	broad.mit.edu	37	chr5	33614434	33614434	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgtcaaggccatctttctgGattgtgtactcatacttgat	8	8	4	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ADAMTS12	NM_030955	exon16	c.C2436A	p.I812I	TTTCTGGATTGTG		91	4	0.04	93	0	0		464		1	0	0				T	33614434	G	T	33614434	2	4	96	1	0	0	0	0	0	0	0	1	256	1164	41	3		3	ADAMTS12	5	33614434	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	824754	33614434	147300826	193	6827											
OSMR	9180	broad.mit.edu	37	chr5	38933393	38933393	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacccatgtttggagacaaGgacagtctcccaacaaaccc	7	14	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	OSMR	NM_003999	exon18	c.G2787T	p.K929N	AGACAAGGACAGT		235	3	0.01	270	0	0		133		2	0	0				T	38933393	G	T	38933393	3	4	96	1	0	0	0	0	1	0	0	0	11338	991	35	3	2891	3	OSMR	5	38933393	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	5318959	38933393	141981867	194	6828											
RICTOR	253260	broad.mit.edu;bcgsc.ca	37	chr5	38958837	38958837	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgttttgtttttatcatgtaGctgggtcactaacaactcaa	7	8	3	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RICTOR	NM_152756	exon23	c.C2275A	p.L759I	CATGTAGCTGGGT		176	6	0.03	198	1	0.0050505051		182		1	0	0				T	38958837	G	T	38958837	3	4	96	1	0	0	0	0	1	0	0	0	13407	962	34	2	2915	2	RICTOR	5	38958837	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	25444	38958837	141956423	195	6829											
WDR41	55255	broad.mit.edu	37	chr5	76736715	76736715	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttcttgttgggtgtccaGttgtggagatgggtcccaga	14	6	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	WDR41	NM_018268	exon9	c.C805A	p.L269M	TGTCCAGTTGTGG		98	4	0.04	90	1	0.0111111111		29		33	1	0.03				T	76736715	G	T	76736715	3	4	96	1	0	0	0	0	1	0	0	0	17353	1020	36	3	594	3	WDR41	5	76736715	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	37777878	76736715	104178545	196	6830											
MSH3	4437	broad.mit.edu	37	chr5	80160704	80160704	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaattactcacaccagGtggggaattaccacatggga	9	8	1	0	rs375336744	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MSH3	NM_002439	exon22	c.G3073T	p.V1025L	CACCAGGTGGGGA		140	5	0.04	159	0	0		129		24	0	0				T	80160704	G	T	80160704	3	4	96	1	0	0	0	0	1	0	0	0	9919	1261	44	3	3159	3	MSH3	5	80160704	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3423989	80160704	100754556	197	6831											
GPR98	84059	broad.mit.edu	37	chr5	89918485	89918485	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttactctcatcagggaaaaGggaacctatggaatggtcat	10	8	3	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	GPR98,NS,carcinoma,0,1	GPR98	NM_032119	exon5	c.G525T	p.K175N	GGAAAAGGGAACC		336	4	0.01	284	0	0		605	1	0	0					T	89918485	G	T	89918485	3	4	96	1	0	0	0	0	1	0	0	0	6761	991	35	3	543	3	GPR98	5	89918485	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	9757781	89918485	90996775	198	6832											
SLCO4C1	353189	broad.mit.edu	37	chr5	101631695	101631695	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gacattgaggatggaagttcCtccagccgtaagacccctcc	10	13	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLCO4C1	NM_180991	exon1	c.G272C	p.R91T	AAGTTCCTCCAGC		212	8	0.04	198	0	0		113		1	0	0				G	101631695	C	G	101631695	3	3	96	1	0	0	0	0	1	0	0	0	14784	681	24	5	1954	5	SLCO4C1	5	101631695	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	11713210	101631695	79283565	199	6833											
SRP19	7905	ucsc.edu	37	chr5	112228215	112228215	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagccctttctctgtttaaCggacgatggtatgcaggacg	12	10	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SRP19	.	.	.	.	GTTTAACGGACGA		331	2	0.01	336	0	0		12		35	31	0.89	rescued with RNA-seq			T	112228215	C	T	112228215	2	4	96	1	0	0	0	0	0	0	0	1	15209	551	19	1		1	SRP19	5	112228215	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	10596520	112228215	68687045	200	6834											
SLC22A4	6583	broad.mit.edu	37	chr5	131676374	131676374	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttccagaaaccttagagCagatgcagaaagtgaaatgg	10	8	1	5	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLC22A4	NM_003059	exon9	c.C1561T	p.Q521X	TTAGAGCAGATGC		142	3	0.02	107	0	0		45		0	0					T	131676374	C	T	131676374	4	4	96	1	0	0	0	0	0	1	0	0	14510	711	25	2	1595	2	SLC22A4	5	131676374	Nonsense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	19448159	131676374	49238886	201	6835											
EGR1	1958	broad.mit.edu	37	chr5	137802588	137802588	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagtggcaacaccttgtgGcccgagcccctcttcagctt	9	15	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	EGR1,colon,carcinoma,0,1	EGR1	NM_001964	exon2	c.G450T	p.W150C	CTTGTGGCCCGAG		139	6	0.04	105	0	0		52	1	15	0	0				T	137802588	G	T	137802588	3	4	96	1	0	0	0	0	1	0	0	0	4997	1212	42	2	456	2	EGR1	5	137802588	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	6126214	137802588	43112672	202	6836											
NDST1	3340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr5	149932837	149932837	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gagctctccaagctgctgtaTaagatgggccagacacttcc	10	12	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001543	exon15	c.T2592G	p.Y864X	GCTGTATAAGATG		94	49	0.52	78	0	0				52	29	0.56				G	149932837	T	G	149932837	4	3	96	1	0	0	0	0	0	1	0	0	10301	1413	49	4	2646	4	NDST1	5	149932837	Nonsense_Mutation	SNP	T	TCGA-VF-A8A8-01A-11D-A435-10	12130249	149932837	30982423	203	6837											
GRIA1	0	broad.mit.edu	37	chr5	153026671	153026671	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcaggatgccctcatcaGcatcattgaccattacaagt	7	12	3	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	GRIA1	NM_001258021	exon3	c.G434T	p.S145I	TCATCAGCATCAT		147	3	0.02	150	0	0		321		9	0	0				T	153026671	G	T	153026671	3	4	96	1	0	0	0	0	1	0	0	0	6807	971	34	2	414	2	GRIA1	5	153026671	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3093834	153026671	27888589	204	6838											
GABRB2	0	broad.mit.edu	37	chr5	160721152	160721152	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaccactgggaagaatatgCgggaccaccgatctatggca	11	10	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	GABRB2_ENST00000274547,NS,carcinoma,-1,2	GABRB2	NM_021911	exon11	c.G1475A	p.R492H	AATATGCGGGACC		172	4	0.02	228	1	0.0043859649		161	2	0	0					T	160721152	C	T	160721152	3	4	96	1	0	0	0	0	1	0	0	0	6201	768	27	1	67	1	GABRB2	5	160721152	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	7694481	160721152	20194108	205	6839											
WWC1	23286	broad.mit.edu	37	chr5	167719173	167719173	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaagatgccccggccggagCtgcccctgccggagggctgg	18	14	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	WWC1	NM_015238	exon1	c.C16T	p.L6L	CCGGAGCTGCCCC		150	3	0.02	126	1	0.0079365079		98		1	0	0				T	167719173	C	T	167719173	2	4	96	1	0	0	0	0	0	0	0	1	17470	796	28	2		2	WWC1	5	167719173	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	6998021	167719173	13196087	206	6840											
STK10	6793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	171520918	171520918	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggcttgtcagcattgaggCttggcggactcacctcagag	14	10	3	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_005990	exon9	c.G1052T	p.S351I	TTGAGGCTTGGCG		164	78	0.48	141	0	0				34	19	0.56				A	171520918	C	A	171520918	3	1	96	1	0	0	0	0	1	0	0	0	15341	797	28	2	1898	2	STK10	5	171520918	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	3801745	171520918	9394342	207	6841											
STC2	8614	broad.mit.edu	37	chr5	172750382	172750382	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttatgcagccgaacctgtGccgcagagcgtgggccttac	13	13	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	STC2	NM_003714	exon3	c.C346A	p.H116N	ACCTGTGCCGCAG		150	5	0.03	183	2	0.0109289617		59		200	4	0.02				T	172750382	G	T	172750382	3	4	96	1	0	0	0	0	1	0	0	0	15331	1319	46	2	570	2	STC2	5	172750382	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1229464	172750382	8164878	208	6842											
CDHR2	54825	broad.mit.edu	37	chr5	176002409	176002409	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagttttactcggcctctgtGgctgaggatgcagccaaggt	14	9	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CDHR2	NM_017675	exon9	c.G750T	p.V250V	CTCTGTGGCTGAG		125	4	0.03	175	1	0.0057142857		152		0	0					T	176002409	G	T	176002409	2	4	96	1	0	0	0	0	0	0	0	1	3141	1335	47	3		3	CDHR2	5	176002409	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3252027	176002409	4912851	209	6843											
FGFR4	2264	broad.mit.edu	37	chr5	176519440	176519440	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcccagccccacatccaGtggctgaagcacatcgtcat	9	15	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FGFR4	NM_022963	exon6	c.G846T	p.Q282H	CATCCAGTGGCTG		254	4	0.02	215	2	0.0093023256		174		58	0	0				T	176519440	G	T	176519440	3	4	96	1	0	0	0	0	1	0	0	0	5900	1020	36	3	868	3	FGFR4	5	176519440	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	517031	176519440	4395820	210	6844											
EXOC2	55770	broad.mit.edu	37	chr6	629857	629857	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaatctcaatgccaagcgGgttagcaggacgtaaggaca	11	9	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	EXOC2	NM_018303	exon4	c.C400A	p.P134T	CAAGCGGGTTAGC		197	4	0.02	132	0	0		81		7	0	0				T	629857	G	T	629857	3	4	96	1	0	0	0	0	1	0	0	0	5329	1232	43	3	2474	3	EXOC2	6	629857	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10		629857	170485210	211	6845											
BPHL	670	mdanderson.org	37	chr6	3119019	3119019	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtgttgcgcctgcggctGcttctctcagcgctgaagcc	14	14	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_004332	exon1	c.G45T	p.L15L	GCGGCTGCTTCTC		49	3	0.06	23	1	0.0434782609				25	0	0				T	3119019	G	T	3119019	2	4	96	1	0	0	0	0	0	0	0	1	1491	1306	46	2		2	BPHL	6	3119019	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2489162	3119019	167996048	212	6846											
F13A1	2162	broad.mit.edu	37	chr6	6305608	6305608	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gacgtattccaccctgaagaGatcccttctggggtcatatg	10	11	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	F13A1	NM_000129	exon3	c.C295A	p.L99I	TGAAGAGATCCCT		236	3	0.01	146	1	0.0068493151		135		1	0	0				T	6305608	G	T	6305608	3	4	96	1	0	0	0	0	1	0	0	0	5368	942	33	3	1955	3	F13A1	6	6305608	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3186589	6305608	164809459	213	6847											
TRIM38	10475	broad.mit.edu	37	chr6	25967154	25967154	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgaagacgtatgccaggGctacaaggtgagtgtgtggg	17	5	0	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TRIM38	NM_006355	exon3	c.G404T	p.G135V	GCCAGGGCTACAA		143	5	0.03	114	1	0.0087719298		50		8	0	0				T	25967154	G	T	25967154	3	4	96	1	0	0	0	0	1	0	0	0	16572	1203	42	2	406	2	TRIM38	6	25967154	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	19661546	25967154	145147913	214	6848											
HIST1H1C	3006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	26056602	26056602	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccgccttcttctttacagGggccttctccgcaggaggcg	13	14	3	0	rs200705328	bycluster;by1000genomes	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_005319	exon1	c.C55G	p.P19A	TTACAGGGGCCTT		282	100	0.35	170	0	0	0			57	20	0.35				C	26056602	G	C	26056602	3	2	96	1	0	0	0	0	1	0	0	0	7164	1232	43	5	590	5	HIST1H1C	6	26056602	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	89448	26056602	145058465	215	6849											
OR2B6	26212	broad.mit.edu	37	chr6	27925454	27925454	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gactctgcctccagttggcaGctgcatcctgggttactggt	12	12	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	OR2B6	NM_012367	exon1	c.G436T	p.A146S	TTGGCAGCTGCAT		138	4	0.03	77	0	0		48		0	0					T	27925454	G	T	27925454	3	4	96	1	0	0	0	0	1	0	0	0	11038	971	34	2	438	2	OR2B6	6	27925454	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1868852	27925454	143189613	216	6850											
NEU1	4758	broad.mit.edu	37	chr6	31830433	31830433	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccttggaccaggaggctgCcagagacagcagcaggaaga	15	10	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NEU1	NM_000434	exon1	c.G121A	p.A41T	AGGCTGCCAGAGA		242	6	0.02	178	2	0.0112359551		21		96	0	0				T	31830433	C	T	31830433	3	4	96	1	0	0	0	0	1	0	0	0	10387	739	26	2	1150	2	NEU1	6	31830433	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	3904979	31830433	139284634	217	6851											
NOTCH4	4855	broad.mit.edu	37	chr6	32163486	32163486	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catgcctgcagaaaacctacGgccgcgaggggtcgggcctc	14	14	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NOTCH4	NM_004557	exon30	c.C5740A	p.R1914S	ACCTACGGCCGCG		111	3	0.03	66	0	0		201		9	0	0				T	32163486	G	T	32163486	3	4	96	1	0	0	0	0	1	0	0	0	10597	1116	39	1	275	1	NOTCH4	6	32163486	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	333053	32163486	138951581	218	6852											
STK38	11329	broad.mit.edu	37	chr6	36463608	36463608	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tattgccccccttgcagtcaGgccctcaaagcgcttgtacg	9	15	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	STK38	NM_007271	exon14	c.C1351A	p.L451M	CAGTCAGGCCCTC		179	4	0.02	110	0	0		54		21	0	0				T	36463608	G	T	36463608	3	4	96	1	0	0	0	0	1	0	0	0	15358	991	35	3	50	3	STK38	6	36463608	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	4300122	36463608	134651459	219	6853											
FGD2	221472	broad.mit.edu	37	chr6	36995746	36995746	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catgagggctcacacctccaTccccctgctgggctaccagg	10	17	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FGD2	NM_173558	exon16	c.T1775C	p.I592T	CCTCCATCCCCCT		198	13	0.07	143	10	0.0699300699		65		2	0	0				C	36995746	T	C	36995746	3	2	96	1	0	0	0	0	1	0	0	0	5865	1435	50	4	1837	4	FGD2	6	36995746	Missense_Mutation	SNP	T	TCGA-VF-A8A8-01A-11D-A435-10	532138	36995746	134119321	220	6854											
DNAH8	1769	broad.mit.edu	37	chr6	38942237	38942237	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gaattaatcaagaccttctgGacatcagtaatttacccatg	6	9	3	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	DNAH8_ENST00000359357,bladder,carcinoma,0,2	DNAH8	NM_001206927	exon85	c.G12766T	p.D4256Y	CTTCTGGACATCA		177	7	0.04	103	1	0.0097087379		1239	2	0	0					T	38942237	G	T	38942237	3	4	96	1	0	0	0	0	1	0	0	0	4634	1174	41	3	12437	3	DNAH8	6	38942237	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1946491	38942237	132172830	221	6855											
TAF8	129685	broad.mit.edu	37	chr6	42025143	42025143	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagctccggtgaccaatcaGccagtgacccccaaggccct	10	17	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TAF8	NM_138572	exon5	c.G381T	p.Q127H	CAATCAGCCAGTG		187	3	0.02	115	0	0		25		48	0	0				T	42025143	G	T	42025143	3	4	96	1	0	0	0	0	1	0	0	0	15590	962	34	2	399	2	TAF8	6	42025143	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3082906	42025143	129089924	222	6856											
XPO5	57510	broad.mit.edu	37	chr6	43519113	43519113	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagacattagtaaggacgcaGgacaggatgaggggatcctt	15	6	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	XPO5	NM_020750	exon15	c.C1650A	p.S550S	GACGCAGGACAGG		325	3	0.01	224	0	0		79		63	0	0				T	43519113	G	T	43519113	2	4	96	1	0	0	0	0	0	0	0	1	17506	987	35	3		3	XPO5	6	43519113	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1493970	43519113	127595954	223	6857											
TCTE1	202500	broad.mit.edu	37	chr6	44248061	44248061	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgggccacatctgacaGgcgcaagtcaaattccagga	10	12	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TCTE1	NM_182539	exon5	c.C1363A	p.L455M	CTGACAGGCGCAA		270	3	0.01	178	0	0		77		1	0	0				T	44248061	G	T	44248061	3	4	96	1	0	0	0	0	1	0	0	0	15775	991	35	3	146	3	TCTE1	6	44248061	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	728948	44248061	126867006	224	6858											
GPR115	221393	broad.mit.edu	37	chr6	47678470	47678470	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tttctctttttttctttataGagaaatgcgaaggaccttgt	7	6	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	GPR115	NM_153838	exon4	c.149-1G>T	.	TTTATAGAGAAAT		241	4	0.02	153	1	0.0065359477		140		0	0					T	47678470	G	T	47678470	5	4	96	1	0	0	0	0	0	0	1	0	6671	956	33	3	158	3	GPR115	6	47678470	Splice_Site	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3430409	47678470	123436597	225	6859											
COL21A1	0	broad.mit.edu	37	chr6	55989038	55989038	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttttctatcaaactcacaGcaggtccagggaggccaggg	11	10	3	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	COL21A1	NM_030820	exon15	c.C1703A	p.A568D	CTCACAGCAGGTC		737	4	0.01	556	0	0		201		5	0	0				T	55989038	G	T	55989038	5	4	96	1	0	0	0	0	0	0	1	0	3703	985	34	2	1234	2	COL21A1	6	55989038	Splice_Site	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	8310568	55989038	115126029	226	6860											
EYS	346007	broad.mit.edu	37	chr6	66053998	66053998	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggatcgttcacataggttGcatcttcagtgcagtttgca	10	9	3	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	EYS_ENST00000370621,NS,carcinoma,0,2	EYS	NM_001142801	exon10	c.C1532T	p.A511V	TAGGTTGCATCTT		236	4	0.02	295	1	0.0033898305		527	2	0	0					A	66053998	G	A	66053998	3	1	96	1	0	0	0	0	1	0	0	0	5360	1319	46	2	8000	2	EYS	6	66053998	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	10064960	66053998	105061069	227	6861											
DDX43	55510	mdanderson.org	37	chr6	74124407	74124407	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atagggcgcacgggaagagcAgggtaagtaagcttagtcca	15	7	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_018665	exon14	c.A1743G	p.A581A	AAGAGCAGGGTAA		58	3	0.05	63	0	0				18	0	0				G	74124407	A	G	74124407	2	3	96	1	0	0	0	0	0	0	0	1	4386	175	7	4		4	DDX43	6	74124407	Silent	SNP	A	TCGA-VF-A8A8-01A-11D-A435-10	8070409	74124407	96990660	228	6862											
IBTK	25998	broad.mit.edu	37	chr6	82921250	82921251	+	Frame_Shift_Ins	INS	-	-	C													tatgacaaggaaattcctttINSccatccactgatttcatggt					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	IBTK	NM_015525	exon14	c.2331_2332insG	p.G777fs	TTCCTTTCCATCC		462	7	0.02	528	0	0		128		3	0	0				C	82921251	-	C	82921250	7	5	96	1	0	1	1	0	0	0	0	0	7519	1770	62	0	1794	0	IBTK	6	82921250	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	8796843	82921250	88193817	229	6863											
ANKRD6	22881	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	90276740	90276740	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gcactttcagagcgccttctCgtagctgcgtacaaaggcca	10	13	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ANKRD6	NM_001242809	exon2	c.C45G	p.L15L	CCTTCTCGTAGCT		521	47	0.09	310	4	0.0129032258		51		1	0	0				G	90276740	C	G	90276740	2	3	96	1	0	0	0	0	0	0	0	1	679	871	31	5		5	ANKRD6	6	90276740	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	7355490	90276740	80838327	230	6864											
AIM1	202	broad.mit.edu	37	chr6	107009345	107009345	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ggggccgatgatcagatttgGatctatcaagaaggatgtat	13	5	3	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	AIM1	NM_001624	exon18	c.G4884T	p.W1628C	GATTTGGATCTAT		153	4	0.03	179	3	0.0167597765		161		12	0	0				T	107009345	G	T	107009345	3	4	96	1	0	0	0	0	1	0	0	0	427	1183	41	3	4954	3	AIM1	6	107009345	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	16732605	107009345	64105722	231	6865											
GPR6	2830	mdanderson.org	37	chr6	110300658	110300658	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgtgctggtaggcagcctgGccaccgctgacctgttggcg	15	13	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_005284	exon1	c.G343A	p.A115T	AGCCTGGCCACCG		48	3	0.06	44	0	0				2	0	0				A	110300658	G	A	110300658	3	1	96	1	0	0	0	0	1	0	0	0	6740	1203	42	2	345	2	GPR6	6	110300658	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3291313	110300658	60814409	232	6866											
KIAA1919	91749	mdanderson.org	37	chr6	111580906	111580906	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggtggttcaccaccttgatGctgtgtgcctccttcctggg	12	13	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_153369	exon1	c.G3T	p.M1I	CTTGATGCTGTGT		62	5	0.08	44	1	0.0227272727				1	0	0				T	111580906	G	T	111580906	3	4	96	1	0	0	0	0	1	0	0	0	8303	1319	46	2	5	2	KIAA1919	6	111580906	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1280248	111580906	59534161	233	6867											
SLC35F1	222553	broad.mit.edu	37	chr6	118596709	118596709	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgggaagaatacatcatccGaactctgagccgagtggaat	11	9	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	SLC35F1,rectum,carcinoma,+1,2	SLC35F1	NM_001029858	exon5	c.G725T	p.R242L	TCATCCGAACTCT		233	6	0.03	238	0	0		65	2	2	0	0				T	118596709	G	T	118596709	3	4	96	1	0	0	0	0	1	0	0	0	14642	1058	37	1	743	1	SLC35F1	6	118596709	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	7015803	118596709	52518358	234	6868											
ALDH8A1	64577	broad.mit.edu	37	chr6	135239750	135239750	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccacattgctggaccacaCggtagccgccagcccatact	8	18	0	0	rs148331222		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ALDH8A1	NM_022568	exon7	c.G1267A	p.V423M	ACCACACGGTAGC		227	6	0.03	249	0	0		68		0	0					T	135239750	C	T	135239750	3	4	96	1	0	0	0	0	1	0	0	0	502	536	19	1	200	1	ALDH8A1	6	135239750	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	16643041	135239750	35875317	235	6869											
FUCA2	2519	broad.mit.edu	37	chr6	143825112	143825112	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tattgatccggtgctcctccGtcaccatccgaccacagaac	7	16	1	2	rs377166178		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FUCA2	NM_032020	exon3	c.C690T	p.D230D	TCCTCCGTCACCA		154	4	0.03	141	0	0		28		146	0	0				A	143825112	G	A	143825112	2	1	96	1	0	0	0	0	0	0	0	1	6129	1136	40	1		1	FUCA2	6	143825112	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	8585362	143825112	27289955	236	6870											
SYTL3	94120	broad.mit.edu	37	chr6	159086520	159086520	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtgcgcgctgccagcaGgtgctggggttcctgctgca	16	12	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SYTL3	NM_001242384	exon6	c.G204T	p.Q68H	CCAGCAGGTGCTG		135	3	0.02	169	0	0		49		0	0					T	159086520	G	T	159086520	3	4	96	1	0	0	0	0	1	0	0	0	15540	991	35	3	210	3	SYTL3	6	159086520	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	15261408	159086520	12028547	237	6871											
SLC22A2	6582	broad.mit.edu	37	chr6	160679540	160679540	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cctacactgtcttggggaggCttcgcccgcaggtcctgggc	14	14	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLC22A2	NM_003058	exon1	c.G250T	p.A84S	GGGAGGCTTCGCC		97	5	0.05	116	1	0.0086206897		78		0	0					A	160679540	C	A	160679540	3	1	96	1	0	0	0	0	1	0	0	0	14505	797	28	2	1461	2	SLC22A2	6	160679540	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	1593020	160679540	10435527	238	6872											
PMS2	5395	broad.mit.edu	37	chr7	6026590	6026590	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagctacatcaacctgagaGgctgacatgtcctgagtatt	9	10	1	3	rs376046767	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PMS2	NM_000535	exon11	c.C1806A	p.A602A	CTGAGAGGCTGAC		221	3	0.01	197	0	0		88		13	0	0				T	6026590	G	T	6026590	2	4	96	1	0	0	0	0	0	0	0	1	12190	987	35	3		3	PMS2	7	6026590	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10		6026590	153112073	239	6873											
KLHL7	55975	broad.mit.edu	37	chr7	23213659	23213659	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggacaatgtggaatattaCgatattaagttgaacgaatg	10	4	0	1	rs147111813	byfrequency	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	KLHL7_ENST00000339077,NS,carcinoma,0,2	KLHL7	NM_001031710	exon11	c.C1503T	p.Y501Y	ATATTACGATATT		281	5	0.02	221	0	0		102	2	21	0	0				T	23213659	C	T	23213659	2	4	96	1	0	0	0	0	0	0	0	1	8436	547	19	1		1	KLHL7	7	23213659	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	17187069	23213659	135925004	240	6874											
BBS9	27241	broad.mit.edu	37	chr7	33313525	33313525	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacactgaagtgggccaccCaacttccccacattcctgta	7	15	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	BBS9	NM_014451	exon9	c.C973T	p.Q325X	GCCACCCAACTTC		171	5	0.03	135	0	0		194		9	0	0				T	33313525	C	T	33313525	4	4	96	1	0	0	0	0	0	1	0	0	1340	595	21	3	1003	3	BBS9	7	33313525	Nonsense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	10099866	33313525	125825138	241	6875											
ELMO1	9844	broad.mit.edu	37	chr7	37264492	37264492	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcatgcttacccttgcagGtgtggaatgagctggccgat	14	9	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ELMO1	NM_014800	exon9	c.C693A	p.H231Q	TTGCAGGTGTGGA		102	3	0.03	98	1	0.0102040816		141		12	0	0				T	37264492	G	T	37264492	3	4	96	1	0	0	0	0	1	0	0	0	5093	1252	44	3	1546	3	ELMO1	7	37264492	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3950967	37264492	121874171	242	6876											
STARD3NL	0	broad.mit.edu	37	chr7	38254698	38254698	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagactgcgccattggtggGcaatagcggtgagtatgccc	15	10	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	STARD3NL	NM_032016	exon4	c.G373T	p.A125S	TGGTGGGCAATAG		105	4	0.04	88	0	0		35		92	0	0				T	38254698	G	T	38254698	3	4	96	1	0	0	0	0	1	0	0	0	15313	1203	42	2	383	2	STARD3NL	7	38254698	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	990206	38254698	120883965	243	6877											
POU6F2	11281	broad.mit.edu	37	chr7	39500265	39500265	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagactcaggtgggacagGctctcagtgctacagagggc	14	12	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	POU6F2,NS,carcinoma,0,3	POU6F2	NM_007252	exon10	c.G1522T	p.A508S	GGACAGGCTCTCA		121	8	0.07	73	0	0		117	3	0	0					T	39500265	G	T	39500265	3	4	96	1	0	0	0	0	1	0	0	0	12329	1203	42	2	1556	2	POU6F2	7	39500265	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1245567	39500265	119638398	244	6878											
STYXL1	51657	broad.mit.edu	37	chr7	75651171	75651171	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgttgcataaaacccacctTtgccatcaccatcagagtct	5	14	3	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	STYXL1	NM_016086	exon4	c.A305T	p.K102I	CCACCTTTGCCAT		75	3	0.04	75	0	0		35		72	0	0				A	75651171	T	A	75651171	3	1	96	1	0	0	0	0	1	0	0	0	15416	1841	64	5	660	5	STYXL1	7	75651171	Missense_Mutation	SNP	T	TCGA-VF-A8A8-01A-11D-A435-10	36150906	75651171	83487492	245	6879											
ABCB4	5244	broad.mit.edu	37	chr7	87079377	87079377	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcctgcttttgcataagcaGctagttctttgtcactaaat	7	10	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ABCB4	NM_018850	exon8	c.C740A	p.A247D	TAAGCAGCTAGTT		231	3	0.01	264	0	0		177		1	0	0				T	87079377	G	T	87079377	3	4	96	1	0	0	0	0	1	0	0	0	43	971	34	2	3204	2	ABCB4	7	87079377	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	11428206	87079377	72059286	246	6880											
ADAM22	53616	broad.mit.edu	37	chr7	87737492	87737492	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tctttatttctgttttcaggGaggagagcactgttactacc	9	8	3	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ADAM22	NM_021722	exon5	c.G392T	p.G131V	TTCAGGGAGGAGA		109	4	0.04	86	0	0		280		0	0					T	87737492	G	T	87737492	5	4	96	1	0	0	0	0	0	0	1	0	243	1188	41	3	410	3	ADAM22	7	87737492	Splice_Site	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	658115	87737492	71401171	247	6881											
PCOLCE	5118	broad.mit.edu	37	chr7	100205135	100205135	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgcagagcaacttctgtgCcagcagccttggtaagaata	10	10	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PCOLCE	NM_002593	exon7	c.C1001T	p.A334V	TCTGTGCCAGCAG		153	6	0.04	134	0	0		37		129	0	0				T	100205135	C	T	100205135	3	4	96	1	0	0	0	0	1	0	0	0	11640	739	26	2	1027	2	PCOLCE	7	100205135	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	12467643	100205135	58933528	248	6882											
SLC12A9	56996	mdanderson.org	37	chr7	100458783	100458783	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgctcctggctgggaagctGaacacactggctgctgtggt	15	10	0	1	rs376976514		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_020246	exon10	c.G1242A	p.L414L	GAAGCTGAACACA		53	3	0.06	70	0	0				40	0	0				A	100458783	G	A	100458783	2	1	96	1	0	0	0	0	0	0	0	1	14444	1277	45	3		3	SLC12A9	7	100458783	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	253648	100458783	58679880	249	6883											
CUX1	1523	broad.mit.edu;mdanderson.org	37	chr7	101758516	101758516	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aaactcgaacagaattatttGacctgaaaaccaaatacgat	5	8	0	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CUX1	NM_181500	exon8	c.G670T	p.D224Y	TTATTTGACCTGA		123	5	0.04	134	2	0.0149253731		253		14	0	0				T	101758516	G	T	101758516	3	4	96	1	0	0	0	0	1	0	0	0	4087	1290	45	3	734	3	CUX1	7	101758516	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1299733	101758516	57380147	250	6884											
LRRC17	10234	broad.mit.edu	37	chr7	102579955	102579955	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	caataaaatcaaccaacttcGacccaaggaatttgaagatg	6	9	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	LRRC17	NM_005824	exon3	c.G851T	p.R284L	AACTTCGACCCAA		152	6	0.04	121	0	0		45		7	0	0				T	102579955	G	T	102579955	3	4	96	1	0	0	0	0	1	0	0	0	9017	1058	37	1	857	1	LRRC17	7	102579955	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	821439	102579955	56558708	251	6885											
IFRD1	3475	broad.mit.edu	37	chr7	112096081	112096081	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agaagtccttgatgaggaagGaactcaagaagacctagagt	12	6	1	6	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	IFRD1,NS,carcinoma,+1,1	IFRD1	NM_001007245	exon4	c.G224T	p.G75V	AGGAAGGAACTCA		83	4	0.05	99	0	0		46	1	70	0	0				T	112096081	G	T	112096081	3	4	96	1	0	0	0	0	1	0	0	0	7596	1174	41	3	234	3	IFRD1	7	112096081	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	9516126	112096081	47042582	252	6886											
CFTR	1080	broad.mit.edu	37	chr7	117188705	117188705	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttaacagggatttggggAattatttgagaaagcaaaac	10	3	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CFTR	NM_000492	exon10	c.A1220T	p.E407V	TTGGGGAATTATT		206	6	0.03	191	1	0.0052356021		171		0	0					T	117188705	A	T	117188705	3	4	96	1	0	0	0	0	1	0	0	0	3316	246	9	5	1258	5	CFTR	7	117188705	Missense_Mutation	SNP	A	TCGA-VF-A8A8-01A-11D-A435-10	5092624	117188705	41949958	253	6887											
CTTNBP2	83992	broad.mit.edu	37	chr7	117431590	117431590	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtggtggagaaggagtttGggagagccctggcttttttg	18	4	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CTTNBP2	NM_033427	exon4	c.C1660A	p.Q554K	GAGTTTGGGAGAG		235	4	0.02	247	2	0.008097166		200		0	0					T	117431590	G	T	117431590	3	4	96	1	0	0	0	0	1	0	0	0	4069	1357	47	3	3411	3	CTTNBP2	7	117431590	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	242885	117431590	41707073	254	6888											
SND1	27044	mdanderson.org	37	chr7	127714713	127714713	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	acaagtccctgctgtctgccGaggaggccgcaaagcagaag	13	12	1	1	rs148173300	bycluster;by1000genomes;alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_014390	exon17	c.G1939T	p.E647X	TCTGCCGAGGAGG		50	3	0.06	47	0	0				324	1	0				T	127714713	G	T	127714713	4	4	96	1	0	0	0	0	0	1	0	0	14897	1059	37	1	2005	1	SND1	7	127714713	Nonsense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	10283123	127714713	31423950	255	6889											
CCDC136	64753	broad.mit.edu	37	chr7	128446881	128446881	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgcagcacctcagggataCggtggcctccttcaaagaga	12	12	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CCDC136	NM_022742	exon9	c.C1388T	p.T463M	GGGATACGGTGGC		196	4	0.02	174	0	0		170		7	0	0				T	128446881	C	T	128446881	3	4	96	1	0	0	0	0	1	0	0	0	2788	536	19	1	1422	1	CCDC136	7	128446881	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	732168	128446881	30691782	256	6890											
EPHB6	2051	mdanderson.org	37	chr7	142565385	142565385	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctgtcttcccagcttccGgaaagactctccttggtgat	10	12	2	2	rs8177153	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_004445	exon12	c.G1770T	p.P590P	GCTTCCGGAAAGA		47	3	0.06	54	0	0				5	0	0				T	142565385	G	T	142565385	2	4	96	1	0	0	0	0	0	0	0	1	5206	1103	39	1		1	EPHB6	7	142565385	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	14118504	142565385	16573278	257	6891											
EPHA1	2041	broad.mit.edu	37	chr7	143094683	143094683	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaacgagaatcccaagcagCaaggctgcaccaagcagcag	10	12	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	EPHA1	NM_005232	exon9	c.G1683A	p.L561L	AAGCAGCAAGGCT		231	3	0.01	238	0	0		193		35	0	0				T	143094683	C	T	143094683	2	4	96	1	0	0	0	0	0	0	0	1	5193	709	25	2		2	EPHA1	7	143094683	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	529298	143094683	16043980	258	6892											
ZNF862	643641	broad.mit.edu	37	chr7	149543304	149543304	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggccagagccatggcttggCagcgtccagggccagaggag	18	11	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZNF862	NM_001099220	exon3	c.C201T	p.G67G	GCTTGGCAGCGTC		240	4	0.02	281	0	0		97		0	0					T	149543304	C	T	149543304	2	4	96	1	0	0	0	0	0	0	0	1	18237	697	25	2		2	ZNF862	7	149543304	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	6448621	149543304	9595359	259	6893											
ATP6V0E2	155066	hgsc.bcm.edu	37	chr7	149571176	149571176	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacggcgcactcattcgccCtcccggtcatcatcttcacc	7	18	5	1	rs11538585	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001100592	exon1	c.C169T	p.L57F	TTCGCCCTCCCGG		97	4	0.04	98	0	0				42	0	0				T	149571176	C	T	149571176	3	4	96	1	0	0	0	0	1	0	0	0	1174	681	24	3	171	3	ATP6V0E2	7	149571176	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	27872	149571176	9567487	260	6894											
MLL3	58508	broad.mit.edu	37	chr7	151873946	151873946	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaagaagtcttttctccAtcatttaggtctgagtgagc	9	8	4	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MLL3	NM_170606	exon38	c.T8592A	p.D2864E	TTCTCCATCATTT		97	3	0.03	130	1	0.0076923077		1564		1	0	0				T	151873946	A	T	151873946	3	4	96	1	0	0	0	0	1	0	0	0	9669	214	8	5	6231	5	MLL3	7	151873946	Missense_Mutation	SNP	A	TCGA-VF-A8A8-01A-11D-A435-10	2302770	151873946	7264717	261	6895											
RBM33	155435	broad.mit.edu	37	chr7	155534588	155534588	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccaaggaacagcaatttgCgtgaattacccatagcgccg	10	12	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	RBM33_ENST00000401878,colon,carcinoma,0,2	RBM33	NM_053043	exon13	c.C2125T	p.R709C	AATTTGCGTGAAT		192	6	0.03	205	1	0.0048780488		157	2	7	0	0				T	155534588	C	T	155534588	3	4	96	1	0	0	0	0	1	0	0	0	13181	768	27	1	2175	1	RBM33	7	155534588	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	3660642	155534588	3604075	262	6896											
REEP4	80346	broad.mit.edu	37	chr8	21996273	21996273	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaccaacactcatcctcgGtgtcgctgtcctgcaggccc	9	17	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	REEP4	NM_025232	exon7	c.C587A	p.T196N	TCCTCGGTGTCGC		101	4	0.04	66	0	0		13		210	0	0				T	21996273	G	T	21996273	3	4	96	1	0	0	0	0	1	0	0	0	13258	1261	44	3	194	3	REEP4	8	21996273	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10		21996273	124367749	263	6897											
STC1	6781	broad.mit.edu	37	chr8	23702384	23702384	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctgcggctcattggtgcGtctcctgttgaagtcagctc	11	12	4	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	STC1,NS,carcinoma,0,2	STC1	NM_003155	exon4	c.C643T	p.R215C	TGGTGCGTCTCCT		248	3	0.01	220	1	0.0045454545		49	2	19	0	0				A	23702384	G	A	23702384	3	1	96	1	0	0	0	0	1	0	0	0	15330	1145	40	1	104	1	STC1	8	23702384	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1706111	23702384	122661638	264	6898											
PPP2R2A	5520	broad.mit.edu	37	chr8	26221301	26221301	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatcatctcctctatttcGgatgtaaaattcagccatag	6	9	4	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	PPP2R2A_ENST00000380737,NS,malignant_melanoma,+1,1	PPP2R2A	NM_001177591	exon8	c.G897T	p.S299S	TATTTCGGATGTA		181	4	0.02	122	1	0.0081967213		44	1	136	0	0				T	26221301	G	T	26221301	2	4	96	1	0	0	0	0	0	0	0	1	12432	1103	39	1		1	PPP2R2A	8	26221301	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2518917	26221301	120142721	265	6899											
ADRA1A	148	broad.mit.edu	37	chr8	26721626	26721626	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgggcatgactaagaaaaaAggcagccagcagaggacgaa	13	7	0	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ADRA1A	NM_033303	exon1	c.T861C	p.P287P	GAAAAAAGGCAGC		89	3	0.03	81	0	0		337		2	0	0				G	26721626	A	G	26721626	2	3	96	1	0	0	0	0	0	0	0	1	333	59	3	4		4	ADRA1A	8	26721626	Silent	SNP	A	TCGA-VF-A8A8-01A-11D-A435-10	500325	26721626	119642396	266	6900											
UBXN8	7993	broad.mit.edu	37	chr8	30608867	30608867	+	RNA	DEL	A	A	-													atagtgagacctcatctcttAaaaaaaaagttttgaatttt					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	UBXN8	.	.	.	.	TCTCTTAAAAAAA		96	7	0.07	67	0	0		13		0	0					-	30608867	A	-	30608867	6	5	96	0	1	1	0	1	0	0	0	0	16978	377	13	0		0	UBXN8	8	30608867	RNA	DEL	A	TCGA-VF-A8A8-01A-11D-A435-10	3887241	30608867	115755155	267	6901											
ANK1	286	broad.mit.edu	37	chr8	41580653	41580653	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtacacaccttggttttgGcttggattggtgccccgtgg	13	9	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ANK1	NM_001142446	exon9	c.C998A	p.A333D	GTTTTGGCTTGGA		199	3	0.02	163	2	0.0122699387		497		2	0	0				T	41580653	G	T	41580653	3	4	96	1	0	0	0	0	1	0	0	0	616	1203	42	2	5236	2	ANK1	8	41580653	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	10971786	41580653	104783369	268	6902											
HOOK3	84376	broad.mit.edu	37	chr8	42829324	42829324	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacaagctcaagaagggcaGctcacaacacaaggtaaaaa	9	9	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	HOOK3	NM_032410	exon13	c.G1308T	p.Q436H	AGGGCAGCTCACA		288	4	0.01	240	0	0		71		7	0	0				T	42829324	G	T	42829324	3	4	96	1	0	0	0	0	1	0	0	0	7324	962	34	2	1358	2	HOOK3	8	42829324	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1248671	42829324	103534698	269	6903											
PRKDC	5591	broad.mit.edu	37	chr8	48825096	48825096	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaacataaacataaccatGctatgtaaaagttcacaggc	5	11	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	PRKDC,NS,carcinoma,-2,2	PRKDC	.	.	.	.	AACCATGCTATGT		172	7	0.04	140	4	0.0285714286		394	2	2	0	0				T	48825096	G	T	48825096	3	4	96	1	0	0	0	0	1	0	0	0	12572	1310	46	2	9825	2	PRKDC	8	48825096	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	5995772	48825096	97538926	270	6904											
PRKDC	5591	broad.mit.edu	37	chr8	48839866	48839866	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cattcttctagagcattcagGcctacttctgccaagggggt	10	11	4	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	PRKDC,NS,carcinoma,-1,2	PRKDC	.	.	.	.	ATTCAGGCCTACT		289	6	0.02	218	0	0		394	2	1	0	0				T	48839866	G	T	48839866	2	4	96	1	0	0	0	0	0	0	0	1	12572	1190	42	2		2	PRKDC	8	48839866	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	14770	48839866	97524156	271	6905											
C8orf44	56260	broad.mit.edu	37	chr8	67592032	67592032	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggcaaaaggggtctttggCcatcttctgctggagcttcc	12	10	3	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	C8orf44	NM_019607	exon3	c.C323T	p.A108V	CTTTGGCCATCTT		193	3	0.02	140	2	0.0142857143		18		6	0	0				T	67592032	C	T	67592032	3	4	96	1	0	0	0	0	1	0	0	0	2446	739	26	2	329	2	C8orf44	8	67592032	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	18752166	67592032	78771990	272	6906											
CSPP1	79848	broad.mit.edu	37	chr8	68030987	68030987	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ttttctttaagatggttcagGaatgatgggcgtacagcctg	12	6	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CSPP1	NM_024790	exon13	c.G1613T	p.G538V	GTTCAGGAATGAT		1042	10	0.01	755	1	0.0013245033		129		12	0	0				T	68030987	G	T	68030987	3	4	96	1	0	0	0	0	1	0	0	0	3987	1174	41	3	1776	3	CSPP1	8	68030987	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	438955	68030987	78333035	273	6907											
BAALC	79870	broad.mit.edu	37	chr8	104153274	104153274	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcggccccgaagcgggcgGcctgcactcgggtaagtggc	17	14	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	BAALC	NM_001024372	exon1	c.G149T	p.G50V	CGGGCGGCCTGCA		140	8	0.06	101	2	0.0198019802		15		0	0					T	104153274	G	T	104153274	3	4	96	1	0	0	0	0	1	0	0	0	1277	1203	42	2	151	2	BAALC	8	104153274	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	36122287	104153274	42210748	274	6908											
DCAF13	25879	broad.mit.edu	37	chr8	104438341	104438341	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	atgggccaggctatggagacGaggaagagccattacataca	13	8	0	2	rs374721908	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DCAF13	NM_015420	exon4	c.G892T	p.E298X	GGAGACGAGGAAG		245	4	0.02	181	0	0		66		202	1	0				T	104438341	G	T	104438341	4	4	96	1	0	0	0	0	0	1	0	0	4290	1059	37	1	906	1	DCAF13	8	104438341	Nonsense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	285067	104438341	41925681	275	6909											
NUDCD1	84955	broad.mit.edu	37	chr8	110308689	110308689	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccagttccatctgacaagGtaacccaggtagaagatgag	10	9	1	4	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NUDCD1	NM_032869	exon3	c.C383A	p.T128N	GACAAGGTAACCC		226	4	0.02	187	0	0		58		45	0	0				T	110308689	G	T	110308689	3	4	96	1	0	0	0	0	1	0	0	0	10769	1261	44	3	1400	3	NUDCD1	8	110308689	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	5870348	110308689	36055333	276	6910											
PKHD1L1	93035	broad.mit.edu	37	chr8	110457854	110457854	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggaggatactccatttctcaGaggaattatcccaagcagag	10	9	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PKHD1L1	NM_177531	exon38	c.G5756T	p.R1919I	TTCTCAGAGGAAT		288	3	0.01	206	0	0		522		0	0					T	110457854	G	T	110457854	3	4	96	1	0	0	0	0	1	0	0	0	12019	942	33	3	5906	3	PKHD1L1	8	110457854	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	149165	110457854	35906168	277	6911											
PTP4A3	11156	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr8	142437898	142437898	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	attgagagcgggatgaagtaCgaggacgccatccagttcat	13	8	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PTP4A3	NM_032611	exon4	c.C378T	p.Y126Y	GAAGTACGAGGAC		61	5	0.08	35	0	0		19		142	53	0.37				T	142437898	C	T	142437898	2	4	96	1	0	0	0	0	0	0	0	1	12821	547	19	1		1	PTP4A3	8	142437898	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	31980044	142437898	3926124	278	6912											
NAPRT1	93100	broad.mit.edu	37	chr8	144658885	144658885	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggcataggccacaaagGctgcccgctcgcctggatgc	12	15	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NAPRT1	NM_145201	exon6	c.C812A	p.A271D	ACAAAGGCTGCCC		113	3	0.03	110	1	0.0090909091		47		108	0	0				T	144658885	G	T	144658885	3	4	96	1	0	0	0	0	1	0	0	0	10212	1203	42	2	836	2	NAPRT1	8	144658885	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2220987	144658885	1705137	279	6913											
DCAF10	79269	broad.mit.edu	37	chr9	37861267	37861267	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catcaaagaactttgcttcaGccccgatggacgaatgattt	8	10	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DCAF10	NM_024345	exon7	c.G1442T	p.S481I	GCTTCAGCCCCGA		110	3	0.03	128	0	0		31		38	0	0				T	37861267	G	T	37861267	3	4	96	1	0	0	0	0	1	0	0	0	4285	971	34	2	1468	2	DCAF10	9	37861267	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10		37861267	103352164	280	6914											
MURC	347273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr9	103340815	103340815	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ataatgaagaaaaacaaattCcgcgtggtaatattccaggt	8	6	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	MURC,caecum,carcinoma,0,1	MURC	NM_001018116	exon1	c.C390T	p.F130F	CAAATTCCGCGTG		234	25	0.11	210	1	0.0047619048		0	1	0	0					T	103340815	C	T	103340815	2	4	96	1	0	0	0	0	0	0	0	1	10034	854	30	3		3	MURC	9	103340815	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	65479548	103340815	37872616	281	6915											
RNF20	56254	broad.mit.edu	37	chr9	104307104	104307104	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aactctttcctcgcacaggaGaatatgaggctacaggaatt	9	9	1	2	rs372537878	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	RNF20,NS,carcinoma,+2,1	RNF20	NM_019592	exon6	c.G684T	p.E228D	ACAGGAGAATATG		66	3	0.05	78	0	0		110	1	19	0	0				T	104307104	G	T	104307104	3	4	96	1	0	0	0	0	1	0	0	0	13524	933	33	3	702	3	RNF20	9	104307104	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	966289	104307104	36906327	282	6916											
BSPRY	54836	broad.mit.edu;mdanderson.org	37	chr9	116116549	116116549	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaccagtgtgagaggctGcagttacagagtgctgccat	15	8	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	BSPRY	NM_017688	exon2	c.G231T	p.L77L	GAGGCTGCAGTTA		119	5	0.04	127	0	0		21		6	0	0				T	116116549	G	T	116116549	2	4	96	1	0	0	0	0	0	0	0	1	1534	1306	46	2		2	BSPRY	9	116116549	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	11809445	116116549	25096882	283	6917											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123292347	123292347	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	catcaggacatgccatctgaGatttctcctctttaaggcac	7	12	4	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CDK5RAP2	NM_018249	exon8	c.C734A	p.S245Y	ATCTGAGATTTCT		171	6	0.04	153	1	0.0065359477		157		5	0	0				T	123292347	G	T	123292347	3	4	96	1	0	0	0	0	1	0	0	0	3168	942	33	3	5071	3	CDK5RAP2	9	123292347	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	7175798	123292347	17921084	284	6918											
C9orf117	286207	broad.mit.edu	37	chr9	130471761	130471761	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgttccgccaggagtttgaGcagctggccaataacaagaa	11	9	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	C9orf117	NM_001012502	exon2	c.G222T	p.E74D	GTTTGAGCAGCTG		166	5	0.03	177	1	0.0056497175		21		3	0	0				T	130471761	G	T	130471761	3	4	96	1	0	0	0	0	1	0	0	0	2469	962	34	2	228	2	C9orf117	9	130471761	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	7179414	130471761	10741670	285	6919											
NOTCH1	4851	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr9	139399283	139399283	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcagctcctcctcgcggccGtagtaggggaagatcatctg	13	13	2	1	rs375196212	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_017617	exon26	c.C4860A	p.Y1620X	GCGGCCGTAGTAG		71	4	0.06	56	0	0				13	0	0				T	139399283	G	T	139399283	4	4	96	1	0	0	0	0	0	1	0	0	10593	1140	40	1	2843	1	NOTCH1	9	139399283	Nonsense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	8927522	139399283	1814148	286	6920											
LARP4B	23185	broad.mit.edu;bcgsc.ca	37	chr10	871022	871031	+	Frame_Shift_Del	DEL	AGGAGAGGAT	AGGAGAGGAT	-													caccttcccctccctaaaccAggagaggattcgagactgcc					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	AGGAGAGGAT	AGGAGAGGAT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	LARP4B	NM_015155	exon13	c.1458_1467del	p.486_489del	TAAACCAGGAGAG		37	10	0.27	56	0	0		110		15	0	0				-	871031	AGGAGAGGAT	-	871022	7	5	96	1	0	1	0	1	0	0	0	0	8669	175	7	0	773	0	LARP4B	10	871022	Frame_Shift_Del	DEL	AGGAGAGGAT	TCGA-VF-A8A8-01A-11D-A435-10		871022	134663725	287	6921											
LARP4B	23185	hgsc.bcm.edu;bcgsc.ca	37	chr10	871042	871045	+	Frame_Shift_Del	DEL	CTGG	CTGG	-													aggagaggattcgagactgcCtggctccacacgcccaggcc					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	CTGG	CTGG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	LARP4B	NM_015155	exon13	c.1445_1448del	p.482_483del	GACTGCCTGGCTC		53	19	0.36	68	0	0		110		6	0	0				-	871045	CTGG	-	871042	7	5	96	1	0	1	0	1	0	0	0	0	8669	681	24	0	793	0	LARP4B	10	871042	Frame_Shift_Del	DEL	CTGG	TCGA-VF-A8A8-01A-11D-A435-10	20	871042	134663705	288	6922											
MASTL	84930	broad.mit.edu	37	chr10	27475370	27475370	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atctgcagcatcagactatgCctttcatcccccagccagat	6	15	3	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MASTL	NM_001172303	exon12	c.C2545T	p.P849S	ACTATGCCTTTCA		182	5	0.03	191	0	0		81		89	0	0				T	27475370	C	T	27475370	3	4	96	1	0	0	0	0	1	0	0	0	9377	739	26	2	2591	2	MASTL	10	27475370	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	26604328	27475370	108059377	289	6923											
SVIL	6840	broad.mit.edu	37	chr10	29754613	29754613	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggtacacaaactctgtgGctgcaaaatccccagaggag	11	11	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SVIL	NM_021738	exon34	c.C6044A	p.A2015D	TCTGTGGCTGCAA		329	3	0.01	358	2	0.0055865922		226		23	0	0				T	29754613	G	T	29754613	3	4	96	1	0	0	0	0	1	0	0	0	15476	1203	42	2	620	2	SVIL	10	29754613	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2279243	29754613	105780134	290	6924											
SVIL	6840	broad.mit.edu	37	chr10	29812745	29812745	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcgctaccctctaccaaaGgctgccaagcttgcgatttc	7	15	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SVIL	NM_021738	exon15	c.C2798A	p.P933H	ACCAAAGGCTGCC		137	5	0.04	182	0	0		226		3	0	0				T	29812745	G	T	29812745	3	4	96	1	0	0	0	0	1	0	0	0	15476	1000	35	3	3942	3	SVIL	10	29812745	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	58132	29812745	105722002	291	6925											
SVIL	6840	hgsc.bcm.edu	37	chr10	29813507	29813508	+	Frame_Shift_Ins	INS	-	-	G													aatcgcttttgagactggctINSgggacaatttgttaaacaag					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SVIL	NM_021738	exon14	c.2480_2481insC	p.Q827fs	ACTGGCTGGGACA		171	10	0.06	167	0	0		226		1	0	0				G	29813508	-	G	29813507	7	5	96	1	0	1	1	0	0	0	0	0	15476	1580	55	0	4264	0	SVIL	10	29813507	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	762	29813507	105721240	292	6926											
ANXA8L2	244	broad.mit.edu	37	chr10	47756087	47756087	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggcactggccctccaagacGcacaggtgaggctgcgccca	13	16	0	2	rs138417320		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ANXA8L2	NM_001630	exon7	c.G547A	p.A183T	CAAGACGCACAGG		852	11	0.01	815	5	0.0061349693		8		2	0	0				A	47756087	G	A	47756087	3	1	96	1	0	0	0	0	1	0	0	0	720	1087	38	1	573	1	ANXA8L2	10	47756087	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	17942580	47756087	87778660	293	6927											
PCDH15	65217	broad.mit.edu	37	chr10	55568542	55568542	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatacgctggtacctgataGccccatggacctccagactg	9	14	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PCDH15	.	.	.	.	CTGATAGCCCCAT		190	3	0.02	232	3	0.0129310345		1715		0	0					T	55568542	G	T	55568542	2	4	96	1	0	0	0	0	0	0	0	1	11557	958	34	2		2	PCDH15	10	55568542	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	7812455	55568542	79966205	294	6928											
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	61815643	61815643	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttggtttcagagtttcctTggtactctgttttcctacat	7	8	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_020987	exon42	c.A12838G	p.K4280E	TTTCCTTGGTACT		120	63	0.53	143	0	0				14	7	0.5				C	61815643	T	C	61815643	3	2	96	1	0	0	0	0	1	0	0	0	618	1821	63	4	303	4	ANK3	10	61815643	Missense_Mutation	SNP	T	TCGA-VF-A8A8-01A-11D-A435-10	6247101	61815643	73719104	295	6929											
DLG5	9231	mdanderson.org	37	chr10	79613279	79613279	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgagtctggtcactcaggaGccggctgtggagtgtgctga	16	10	3	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_004747	exon5	c.C697A	p.L233I	TCAGGAGCCGGCT		21	2	0.1	24	0	0				0	0					T	79613279	G	T	79613279	3	4	96	1	0	0	0	0	1	0	0	0	4586	971	34	2	5174	2	DLG5	10	79613279	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	17797636	79613279	55921468	296	6930											
PLCE1	51196	broad.mit.edu	37	chr10	95791638	95791638	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggttgacatggtatattcaGgtgatagcttttgtaggaaa	12	3	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PLCE1	NM_016341	exon2	c.G835T	p.G279C	TATTCAGGTGATA		225	5	0.02	230	2	0.0086956522		543		0	0					T	95791638	G	T	95791638	3	4	96	1	0	0	0	0	1	0	0	0	12081	1000	35	3	837	3	PLCE1	10	95791638	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	16178359	95791638	39743109	297	6931											
PDLIM1	9124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	96997861	96997861	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acggtcccgcagcttcacaaAcacaccactacagaagcaag	7	15	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_020992	exon7	c.T811C	p.F271L	TCACAAACACACC		66	31	0.47	74	0	0				421	180	0.43				G	96997861	A	G	96997861	3	3	96	1	0	0	0	0	1	0	0	0	11725	43	2	4	182	4	PDLIM1	10	96997861	Missense_Mutation	SNP	A	TCGA-VF-A8A8-01A-11D-A435-10	1206223	96997861	38536886	298	6932											
PGAM1	5223	broad.mit.edu	37	chr10	99186071	99186071	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagcccgccgccatggccGcctacaaactggtgctgatc	10	18	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PGAM1	NM_002629	exon1	c.G7T	p.A3S	ATGGCCGCCTACA		240	5	0.02	216	2	0.0092592593		11		564	3	0.01				T	99186071	G	T	99186071	3	4	96	1	0	0	0	0	1	0	0	0	11820	1087	38	1	9	1	PGAM1	10	99186071	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2188210	99186071	36348676	299	6933											
ANKRD2	26287	broad.mit.edu	37	chr10	99343382	99343382	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctggcaggctgatacccGgcacgccctggagcatcctg	13	15	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ANKRD2	NM_020349	exon9	c.G983T	p.R328L	ATACCCGGCACGC		218	7	0.03	200	0	0		27		8	0	0				T	99343382	G	T	99343382	3	4	96	1	0	0	0	0	1	0	0	0	643	1116	39	1	1017	1	ANKRD2	10	99343382	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	157311	99343382	36191365	300	6934											
CUEDC2	79004	broad.mit.edu	37	chr10	104183205	104183205	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggaagcggtactttctgGctggcttgaggttgatgtat	14	5	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CUEDC2	NM_024040	exon9	c.C842A	p.A281D	TTTCTGGCTGGCT		239	6	0.03	231	1	0.0043290043		22		183	0	0				T	104183205	G	T	104183205	3	4	96	1	0	0	0	0	1	0	0	0	4076	1203	42	2	25	2	CUEDC2	10	104183205	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	4839823	104183205	31351542	301	6935											
CCKBR	887	broad.mit.edu	37	chr11	6291057	6291057	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtcagcgacctcctgctgGctgtggcttgcatgcccttc	11	15	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CCKBR	NM_176875	exon2	c.G310T	p.A104S	CTGCTGGCTGTGG		147	5	0.03	157	1	0.0063694268		232		9	0	0				T	6291057	G	T	6291057	3	4	96	1	0	0	0	0	1	0	0	0	2901	1203	42	2	316	2	CCKBR	11	6291057	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10		6291057	128715459	302	6936											
MICAL2	9645	broad.mit.edu	37	chr11	12263797	12263797	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgacggggcacgtgctcagaGagctcaagcaagtgtctgct	14	10	3	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MICAL2	NM_014632	exon19	c.G2374T	p.E792X	CTCAGAGAGCTCA		89	4	0.04	113	0	0		114		0	0					T	12263797	G	T	12263797	4	4	96	1	0	0	0	0	0	1	0	0	9617	943	33	3	2440	3	MICAL2	11	12263797	Nonsense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	5972740	12263797	122742719	303	6937											
NAV2	89797	broad.mit.edu;mdanderson.org	37	chr11	19914121	19914121	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcacctccccacccccaccGccaagcagccacgagaaagg	8	20	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	NAV2,colon,carcinoma,0,1	NAV2	NM_001244963	exon7	c.G981T	p.P327P	CCCACCGCCAAGC		94	4	0.04	100	1	0.01		255	1	1	0	0				T	19914121	G	T	19914121	2	4	96	1	0	0	0	0	0	0	0	1	10231	1074	38	1		1	NAV2	11	19914121	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	7650324	19914121	115092395	304	6938											
NAT10	55226	broad.mit.edu	37	chr11	34149080	34149080	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gattgatgaagctgccgccaTccccctccccttggtgaaga	10	14	0	4	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NAT10	NM_024662	exon12	c.T1178C	p.I393T	CCGCCATCCCCCT		173	9	0.05	179	2	0.0111731844		78		43	0	0				C	34149080	T	C	34149080	3	2	96	1	0	0	0	0	1	0	0	0	10221	1435	50	4	1220	4	NAT10	11	34149080	Missense_Mutation	SNP	T	TCGA-VF-A8A8-01A-11D-A435-10	14234959	34149080	100857436	305	6939											
ELF5	2001	broad.mit.edu	37	chr11	34527231	34527231	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgctgaacagatcagtccaCgacatcaggggatcgcagaa	11	10	2	3	rs368376316		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ELF5	NM_001243081	exon2	c.G96A	p.S32S	AGTCCACGACATC		137	3	0.02	160	2	0.0125		21		0	0					T	34527231	C	T	34527231	2	4	96	1	0	0	0	0	0	0	0	1	5085	523	19	1		1	ELF5	11	34527231	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	378151	34527231	100479285	306	6940											
FNBP4	23360	broad.mit.edu	37	chr11	47744591	47744591	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgggagctggtggtggtggAggaggaggaggaggaggtgg	26	1	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	FNBP4,NS,carcinoma,0,1	FNBP4	NM_015308	exon15	c.T2742A	p.P914P	TGGTGGAGGAGGA		57	3	0.05	66	1	0.0151515152		99	1	69	0	0				T	47744591	A	T	47744591	2	4	96	1	0	0	0	0	0	0	0	1	5999	291	11	5		5	FNBP4	11	47744591	Silent	SNP	A	TCGA-VF-A8A8-01A-11D-A435-10	13217360	47744591	87261925	307	6941											
FLRT1	23769	mdanderson.org	37	chr11	63884330	63884330	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcatcccctcggggctgccGcacacgctggaggagctgcg	15	15	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_013280	exon2	c.G591T	p.P197P	GCTGCCGCACACG		38	3	0.08	32	0	0				1	0	0				T	63884330	G	T	63884330	2	4	96	1	0	0	0	0	0	0	0	1	5970	1074	38	1		1	FLRT1	11	63884330	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	16139739	63884330	71122186	308	6942											
PYGM	5837	broad.mit.edu	37	chr11	64521405	64521405	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaggtgccgcggcagcagCgtctccaagaggtgcaccgg	17	12	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PYGM	NM_005609	exon10	c.G1185A	p.T395T	CAGCAGCGTCTCC		158	3	0.02	168	0	0		77		1	0	0				T	64521405	C	T	64521405	2	4	96	1	0	0	0	0	0	0	0	1	12913	755	27	1		1	PYGM	11	64521405	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	637075	64521405	70485111	309	6943											
TCIRG1	10312	mdanderson.org	37	chr11	67818094	67818094	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatcctgctggtgatggagGgactctcagccttcctgcac	11	13	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_006019	exon19	c.G2377T	p.G793X	ATGGAGGGACTCT		54	3	0.06	45	1	0.0222222222				59	0	0				T	67818094	G	T	67818094	4	4	96	1	0	0	0	0	0	1	0	0	15762	1233	43	3	2447	3	TCIRG1	11	67818094	Nonsense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3296689	67818094	67188422	310	6944											
TMEM135	65084	broad.mit.edu	37	chr11	87006865	87006865	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atttacattttctgcacttaGgtaagaaacatttattttta	4	5	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TMEM135	NM_022918	exon7	c.G551T	p.R184M	CACTTAGGTAAGA		334	9	0.03	301	2	0.0066445183		40		0	0					T	87006865	G	T	87006865	5	4	96	1	0	0	0	0	0	0	1	0	16110	1014	35	3	577	3	TMEM135	11	87006865	Splice_Site	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	19188771	87006865	47999651	311	6945											
BIRC2	329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	102221221	102221221	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agagctggtttttattatatAggacctggagatagggtagc	13	4	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001256163	exon2	c.A636G	p.I212M	TTATATAGGACCT		133	12	0.09	121	0	0				14	3	0.21				G	102221221	A	G	102221221	3	3	96	1	0	0	0	0	1	0	0	0	1434	410	15	4	638	4	BIRC2	11	102221221	Missense_Mutation	SNP	A	TCGA-VF-A8A8-01A-11D-A435-10	15214356	102221221	32785295	312	6946											
BIRC2	329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	102221245	102221245	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggagatagggtagcctgCtttgcctgtggtgggaagct	16	8	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001256163	exon2	c.C660T	p.C220C	AGCCTGCTTTGCC		129	10	0.08	128	0	0				22	3	0.14				T	102221245	C	T	102221245	2	4	96	1	0	0	0	0	0	0	0	1	1434	805	28	2		2	BIRC2	11	102221245	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	24	102221245	32785271	313	6947											
RNF214	257160	broad.mit.edu	37	chr11	117105020	117105020	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaggttgctggtgttgtggCcaatgcccccagtcctccgg	14	12	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RNF214	NM_207343	exon2	c.C32T	p.A11V	TTGTGGCCAATGC		287	4	0.01	353	1	0.0028328612		54		13	0	0				T	117105020	C	T	117105020	3	4	96	1	0	0	0	0	1	0	0	0	13529	739	26	2	34	2	RNF214	11	117105020	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	14883775	117105020	17901496	314	6948											
OR8B3	390271	broad.mit.edu	37	chr11	124267204	124267204	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggatgatctgttaatccaGcaagaataaattcagtcact	7	8	3	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	OR8B3	NM_001005467	exon1	c.C44A	p.A15D	AATCCAGCAAGAA		146	4	0.03	167	0	0		36		0	0					T	124267204	G	T	124267204	3	4	96	1	0	0	0	0	1	0	0	0	11274	971	34	2	899	2	OR8B3	11	124267204	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	7162184	124267204	10739312	315	6949											
RAD52	5893	broad.mit.edu	37	chr12	1025813	1025813	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taggccgcataccgggagctGcagtcctggtccgccggtat	14	13	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RAD52	NM_134424	exon8	c.C717T	p.C239C	GGAGCTGCAGTCC		249	4	0.02	88	1	0.0113636364		27		27	0	0				A	1025813	G	A	1025813	2	1	96	1	0	0	0	0	0	0	0	1	13042	1311	46	2		2	RAD52	12	1025813	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10		1025813	132826082	316	6950											
NRIP2	83714	broad.mit.edu	37	chr12	2944011	2944011	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtgctcatggcccctgctgGaggagtgggccaggggctgc	19	11	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NRIP2	NM_031474	exon1	c.C139A	p.P47T	CTGCTGGAGGAGT		307	4	0.01	97	1	0.0103092784		21		8	0	0				T	2944011	G	T	2944011	3	4	96	1	0	0	0	0	1	0	0	0	10700	1174	41	3	730	3	NRIP2	12	2944011	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1918198	2944011	130907884	317	6951											
VWF	7450	broad.mit.edu	37	chr12	6076729	6076729	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccacctgcaccatgcagcGgcaggtcgtgcacacatcga	10	17	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	VWF,NS,NS,0,1	VWF	NM_000552	exon47	c.C7810A	p.R2604S	TGCAGCGGCAGGT		297	3	0.01	100	0	0		338	1	145	0	0				T	6076729	G	T	6076729	3	4	96	1	0	0	0	0	1	0	0	0	17305	1116	39	1	655	1	VWF	12	6076729	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3132718	6076729	127775166	318	6952											
CD9	928	broad.mit.edu	37	chr12	6344654	6344654	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctgtagttgaactgctgtGgtttggctgggggcgtggaa	18	6	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CD9	NM_001769	exon6	c.G460T	p.G154C	TGCTGTGGTTTGG		326	6	0.02	96	1	0.0104166667		24		4845	3	0				T	6344654	G	T	6344654	3	4	96	1	0	0	0	0	1	0	0	0	3068	1348	47	3	482	3	CD9	12	6344654	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	267925	6344654	127507241	319	6953											
SCNN1A	0	broad.mit.edu	37	chr12	6483687	6483687	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgcagagccacagcactGcccagaaggccgtcttcatg	12	13	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SCNN1A	NM_001159576	exon1	c.C440A	p.A147E	AGCACTGCCCAGA		304	5	0.02	91	0	0		54		81	0	0				T	6483687	G	T	6483687	3	4	96	1	0	0	0	0	1	0	0	0	13980	1319	46	2	1794	2	SCNN1A	12	6483687	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	139033	6483687	127368208	320	6954											
IFFO1	25900	broad.mit.edu	37	chr12	6649685	6649685	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagatgagacatcgcgatcGgagtcctcagcctcgcttgg	12	12	2	2	rs201420908	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	IFFO1	NM_001193457	exon10	c.C1680A	p.S560S	GCGATCGGAGTCC		399	9	0.02	117	0	0		55		79	0	0				T	6649685	G	T	6649685	2	4	96	1	0	0	0	0	0	0	0	1	7553	1103	39	1		1	IFFO1	12	6649685	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	165998	6649685	127202210	321	6955											
ACRBP	84519	broad.mit.edu	37	chr12	6749616	6749616	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggcctctgagtggcactGctccagcttcaaggagcaga	13	12	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ACRBP	NM_032489	exon7	c.C1150T	p.Q384X	GGCACTGCTCCAG		313	5	0.02	102	0	0		52		2	0	0				A	6749616	G	A	6749616	4	1	96	1	0	0	0	0	0	1	0	0	170	1328	46	2	497	2	ACRBP	12	6749616	Nonsense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	99931	6749616	127102279	322	6956											
ZNF384	0	broad.mit.edu	37	chr12	6787518	6787518	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caacctgcagggcttgtgagCcagggggaagagctgagaca	16	9	0	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZNF384	NM_133476	exon6	c.G461A	p.G154D	TGTGAGCCAGGGG		308	6	0.02	91	0	0		102		89	0	0				T	6787518	C	T	6787518	3	4	96	1	0	0	0	0	1	0	0	0	17931	739	26	2	1296	2	ZNF384	12	6787518	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	37902	6787518	127064377	323	6957											
A2M	2	broad.mit.edu	37	chr12	9248225	9248225	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acattatgacgattgatgcaGtcttcattgtcctggtcatt	8	8	3	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	A2M	NM_000014	exon16	c.C1923A	p.D641E	GATGCAGTCTTCA		535	8	0.01	170	2	0.0117647059		180		65	0	0				T	9248225	G	T	9248225	3	4	96	1	0	0	0	0	1	0	0	0	4	1020	36	3	2585	3	A2M	12	9248225	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2460707	9248225	124603670	324	6958											
CLEC7A	64581	broad.mit.edu	37	chr12	10280328	10280328	+	Frame_Shift_Del	DEL	C	C	-													aaattgtctgttgttaatctCctccaccaaatactcaccca					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CLEC7A	.	.	.	.	TAATCTCCTCCAC		1252	13	0.01	378	0	0		55		0	0					-	10280328	C	-	10280328	7	5	96	1	0	1	0	1	0	0	0	0	3544	870	30	0		0	CLEC7A	12	10280328	Frame_Shift_Del	DEL	C	TCGA-VF-A8A8-01A-11D-A435-10	1032103	10280328	123571567	325	6959											
PRB2	653247	broad.mit.edu	37	chr12	11546004	11546004	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cctggaggtgggggaccttgAggtttgttgcctccttgtgg	17	8	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PRB2	NM_006248	exon3	c.T1008A	p.P336P	ACCTTGAGGTTTG		1020	24	0.02	309	3	0.0097087379		168		0	0					T	11546004	A	T	11546004	2	4	96	1	0	0	0	0	0	0	0	1	12494	291	11	5		5	PRB2	12	11546004	Silent	SNP	A	TCGA-VF-A8A8-01A-11D-A435-10	1265676	11546004	122305891	326	6960											
DDX47	51202	broad.mit.edu	37	chr12	12974319	12974319	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agccctggggtcctctattgGagtgcagagtggtaagtgtc	15	8	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DDX47	NM_201224	exon3	c.G359T	p.G120V	CTATTGGAGTGCA		280	4	0.01	94	0	0		37		278	0	0				T	12974319	G	T	12974319	3	4	96	1	0	0	0	0	1	0	0	0	4388	1174	41	3	369	3	DDX47	12	12974319	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1428315	12974319	120877576	327	6961											
GSG1	83445	broad.mit.edu	37	chr12	13243709	13243709	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atagcatgctgaggatggcaGataggagtgtccgctggcca	15	8	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	GSG1	NM_001080554	exon2	c.C92A	p.S31Y	ATGGCAGATAGGA		285	5	0.02	102	0	0		62		18	0	0				T	13243709	G	T	13243709	3	4	96	1	0	0	0	0	1	0	0	0	6860	942	33	3	1144	3	GSG1	12	13243709	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	269390	13243709	120608186	328	6962											
RERG	85004	broad.mit.edu	37	chr12	15264285	15264285	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actctttattcacctgaccaGcagtgtctagtatctccatg	6	12	4	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RERG	NM_032918	exon4	c.C185A	p.A62D	TGACCAGCAGTGT		365	4	0.01	130	0	0		30		12	0	0				T	15264285	G	T	15264285	3	4	96	1	0	0	0	0	1	0	0	0	13283	971	34	2	422	2	RERG	12	15264285	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2020576	15264285	118587610	329	6963											
PDE3A	5139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	20769229	20769229	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tccacttggaccaccaccacCtcggccacaggtctacccac	6	20	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_000921	exon4	c.C1335G	p.T445T	CACCACCTCGGCC		336	32	0.1	108	0	0				0	0					G	20769229	C	G	20769229	2	3	96	1	0	0	0	0	0	0	0	1	11683	668	24	5		5	PDE3A	12	20769229	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	5504944	20769229	113082666	330	6964											
ST8SIA1	6489	broad.mit.edu	37	chr12	22354747	22354747	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcctgtggacaggcgcttGgcatggattcctctactttt	11	10	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	ST8SIA1,colon,carcinoma,-1,1	ST8SIA1	NM_003034	exon5	c.C810A	p.A270A	GCGCTTGGCATGG		295	5	0.02	92	0	0		55	1	3	0	0				T	22354747	G	T	22354747	2	4	96	1	0	0	0	0	0	0	0	1	15286	1335	47	3		3	ST8SIA1	12	22354747	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1585518	22354747	111497148	331	6965											
ETNK1	55500	broad.mit.edu	37	chr12	22797183	22797183	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgcaaaggaaaaactacaaGatgttttggattaaccggct	9	6	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ETNK1	NM_001039481	exon3	c.G722T	p.R241I	CTACAAGATGTTT		269	5	0.02	124	0	0		61		9	0	0				T	22797183	G	T	22797183	3	4	96	1	0	0	0	0	1	0	0	0	5301	942	33	3	732	3	ETNK1	12	22797183	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	442436	22797183	111054712	332	6966											
MRPS35	60488	broad.mit.edu	37	chr12	27908360	27908360	+	Frame_Shift_Del	DEL	A	A	-													ctcagtacaaagaatccgtgAagagactattaaatgtgaca					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	MRPS35,NS,carcinoma,-1,1	MRPS35	NM_021821	exon8	c.949delA	p.K317fs	TCCGTGAAGAGAC		706	9	0.01	248	0	0		26	1	610	0	0				-	27908360	A	-	27908360	7	5	96	1	0	1	0	1	0	0	0	0	9892	247	9	0	979	0	MRPS35	12	27908360	Frame_Shift_Del	DEL	A	TCGA-VF-A8A8-01A-11D-A435-10	5111177	27908360	105943535	333	6967											
TMTC1	83857	broad.mit.edu	37	chr12	29659824	29659825	+	Frame_Shift_Ins	INS	-	-	C													cttgtaatcgtttttctaggINScgatccaatttggcaagatt					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TMTC1	NM_001193451	exon18	c.2604_2605insG	p.R868fs	TTCTAGGCGATCC		488	7	0.01	170	0	0		147		40	0	0				C	29659825	-	C	29659824	7	5	96	1	0	1	1	0	0	0	0	0	16319	1190	42	0	48	0	TMTC1	12	29659824	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	1751464	29659824	104192071	334	6968											
DNM1L	10059	broad.mit.edu	37	chr12	32861095	32861095	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaatttttagctttacacGgattttgatgaaattcgaca	6	5	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DNM1L	NM_012062	exon4	c.G306T	p.T102T	TTACACGGATTTT		823	7	0.01	280	0	0		52		30	0	0				T	32861095	G	T	32861095	2	4	96	1	0	0	0	0	0	0	0	1	4698	1103	39	1		1	DNM1L	12	32861095	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3201271	32861095	100990800	335	6969											
BIN2	51411	broad.mit.edu	37	chr12	51675288	51675288	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggtagtttctcttcagaGttgtggattttcacttgtgg	11	6	3	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	BIN2	NM_016293	exon13	c.C1693A	p.L565I	TTCAGAGTTGTGG		228	6	0.03	162	2	0.012345679		58		73	0	0				T	51675288	G	T	51675288	3	4	96	1	0	0	0	0	1	0	0	0	1432	1029	36	3	8	3	BIN2	12	51675288	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	18814193	51675288	82176607	336	6970											
SLC4A8	9498	broad.mit.edu	37	chr12	51888759	51888759	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctaaagctctttgggatgCccgcaaagcaccagccagat	10	12	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	SLC4A8,NS,carcinoma,-2,1	SLC4A8	NM_001039960	exon21	c.C2800T	p.P934S	GGGATGCCCGCAA		298	4	0.01	215	0	0		292	1	8	0	0				T	51888759	C	T	51888759	3	4	96	1	0	0	0	0	1	0	0	0	14713	739	26	2	2882	2	SLC4A8	12	51888759	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	213471	51888759	81963136	337	6971											
ESPL1	9700	broad.mit.edu	37	chr12	53685533	53685533	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attcaggccctggcctacggGctgtgcccaacccagccaga	11	16	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ESPL1	NM_012291	exon26	c.G5580T	p.G1860G	CTACGGGCTGTGC		295	3	0.01	178	1	0.0056179775		158		89	0	0				T	53685533	G	T	53685533	2	4	96	1	0	0	0	0	0	0	0	1	5281	1190	42	2		2	ESPL1	12	53685533	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1796774	53685533	80166362	338	6972											
AAAS	8086	broad.mit.edu	37	chr12	53714409	53714409	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatgaaggcagttcttgtgCcatggtccagccttccaggg	14	10	1	1	rs151099565	by1000genomes	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	AAAS	NM_015665	exon2	c.G191A	p.G64D	CTTGTGCCATGGT		246	6	0.02	160	1	0.00625		46		132	0	0				T	53714409	C	T	53714409	3	4	96	1	0	0	0	0	1	0	0	0	8	739	26	2	1509	2	AAAS	12	53714409	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	28876	53714409	80137486	339	6973											
CALCOCO1	57658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	54117502	54117502	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggggggctctgcccacacaCctggccctggcggttcacat	13	15	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_020898	exon4	c.G325A	p.V109M	CACACACCTGGCC		198	36	0.18	141	0	0				14	7	0.5				T	54117502	C	T	54117502	3	4	96	1	0	0	0	0	1	0	0	0	2595	507	18	3	1798	3	CALCOCO1	12	54117502	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	403093	54117502	79734393	340	6974											
HOXC11	3227	broad.mit.edu	37	chr12	54367267	54367267	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacggcctggagccatccgGcaagtggcaccatcggaaca	12	14	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	HOXC11	NM_014212	exon1	c.G242T	p.G81V	CATCCGGCAAGTG		182	3	0.02	114	1	0.0087719298		32		0	0					T	54367267	G	T	54367267	3	4	96	1	0	0	0	0	1	0	0	0	7350	1203	42	2	244	2	HOXC11	12	54367267	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	249765	54367267	79484628	341	6975											
RDH5	5959	broad.mit.edu	37	chr12	56115041	56115041	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagggaccggcagagcctgCccgccagcaatgcctttgtc	12	15	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RDH5	NM_001199771	exon2	c.C73T	p.P25S	AGCCTGCCCGCCA		329	7	0.02	248	1	0.0040322581		25		1	0	0				T	56115041	C	T	56115041	3	4	96	1	0	0	0	0	1	0	0	0	13246	739	26	2	75	2	RDH5	12	56115041	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	1747774	56115041	77736854	342	6976											
ERBB3	2065	broad.mit.edu	37	chr12	56491695	56491695	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgacctgctgcctcctgatGataagcagctgctatacagt	9	12	0	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ERBB3	NM_001982	exon21	c.G2587T	p.D863Y	CCTGATGATAAGC		149	3	0.02	72	0	0		350		32	0	0				T	56491695	G	T	56491695	3	4	96	1	0	0	0	0	1	0	0	0	5236	1290	45	3	2800	3	ERBB3	12	56491695	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	376654	56491695	77360200	343	6977											
ZC3H10	84872	mdanderson.org	37	chr12	56514350	56514350	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agttgggcgggaccaggatgCctgaccgggacagctatgcc	16	11	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_032786	exon3	c.C4T	p.P2S	AGGATGCCTGACC		33	3	0.09	34	1	0.0294117647				22	0	0				T	56514350	C	T	56514350	3	4	96	1	0	0	0	0	1	0	0	0	17617	739	26	2	6	2	ZC3H10	12	56514350	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	22655	56514350	77337545	344	6978											
BAZ2A	11176	broad.mit.edu	37	chr12	57000452	57000452	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agtctgacactctccccgttGaaccttctgcctcatcttct	5	16	6	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	BAZ2A	NM_013449	exon11	c.C2164A	p.Q722K	CCCGTTGAACCTT		229	5	0.02	163	0	0		263		4	0	0				T	57000452	G	T	57000452	3	4	96	1	0	0	0	0	1	0	0	0	1329	1299	45	3	3629	3	BAZ2A	12	57000452	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	486102	57000452	76851443	345	6979											
USP15	9958	broad.mit.edu	37	chr12	62783665	62783666	+	Frame_Shift_Ins	INS	-	-	C													attcagacactcgagttataINScccaccatactggttcttca					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	USP15	NM_001252078	exon14	c.1741_1742insC	p.T581fs	AGTTATACCCACC		178	6	0.03	129	0	0		105		21	0	0				C	62783666	-	C	62783665	7	5	96	1	0	1	1	0	0	0	0	0	17105	391	14	0	1704	0	USP15	12	62783665	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	5783213	62783665	71068230	346	6980											
OSBPL8	114882	broad.mit.edu	37	chr12	76780378	76780378	+	Frame_Shift_Del	DEL	C	C	-													cctttggctttttatagaatCctgacaaataccatttcact					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	OSBPL8	NM_020841	exon13	c.1415delG	p.G472fs	TAGAATCCTGACA		658	7	0.01	444	0	0		86		7	0	0				-	76780378	C	-	76780378	7	5	96	1	0	1	0	1	0	0	0	0	11329	855	30	0	1302	0	OSBPL8	12	76780378	Frame_Shift_Del	DEL	C	TCGA-VF-A8A8-01A-11D-A435-10	13996713	76780378	57071517	347	6981											
POC1B	282809	broad.mit.edu	37	chr12	89860639	89860639	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atcaaaatgtaatcttttgaGatttcttttggtaagacctt	6	5	3	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	POC1B,NS,carcinoma,+2,1	POC1B	NM_172240	exon9	c.C940A	p.L314I	TTTTGAGATTTCT		287	5	0.02	200	0	0		41	1	9	0	0				T	89860639	G	T	89860639	3	4	96	1	0	0	0	0	1	0	0	0	12223	942	33	3	512	3	POC1B	12	89860639	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	13080261	89860639	43991256	348	6982											
SCYL2	55681	broad.mit.edu	37	chr12	100711674	100711674	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctacccatggtttacagaGcactagaagctccttccatt	6	12	1	2	rs369328887	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SCYL2	NM_017988	exon10	c.G1366T	p.A456S	TACAGAGCACTAG		263	3	0.01	213	1	0.0046948357		99		9	0	0				T	100711674	G	T	100711674	3	4	96	1	0	0	0	0	1	0	0	0	14001	971	34	2	1400	2	SCYL2	12	100711674	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	10851035	100711674	33140221	349	6983											
ANO4	121601	broad.mit.edu	37	chr12	101477466	101477466	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtcctttaggaagaaatacGaccccagtttgaagccaagt	9	9	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	ANO4,NS,carcinoma,0,1	ANO4	NM_178826	exon15	c.G1301T	p.R434L	AAATACGACCCCA		156	3	0.02	127	0	0		183	1	0	0					T	101477466	G	T	101477466	3	4	96	1	0	0	0	0	1	0	0	0	693	1058	37	1	1355	1	ANO4	12	101477466	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	765792	101477466	32374429	350	6984											
MYBPC1	4604	broad.mit.edu	37	chr12	102053522	102053522	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactctggtcattgatataGctgaaagagatgactctggt	11	7	3	4	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MYBPC1	NM_206819	exon19	c.G1840T	p.A614S	GATATAGCTGAAA		192	5	0.03	148	1	0.0067567568		235		0	0					T	102053522	G	T	102053522	3	4	96	1	0	0	0	0	1	0	0	0	10058	971	34	2	1914	2	MYBPC1	12	102053522	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	576056	102053522	31798373	351	6985											
GIT2	9815	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	110376285	110376285	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcggtgctagggagagtggGgcttggggccacatggggtt	20	6	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_057169	exon18	c.C1903A	p.P635T	GAGTGGGGCTTGG		197	12	0.06	162	0	0				24	2	0.08				T	110376285	G	T	110376285	3	4	96	1	0	0	0	0	1	0	0	0	6438	1232	43	3	388	3	GIT2	12	110376285	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	8322763	110376285	23475610	352	6986											
IFT81	28981	broad.mit.edu	37	chr12	110565264	110565264	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	actataatttaatcacgtttGattccttggagccaatgcaa	6	8	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	IFT81	NM_014055	exon2	c.G79T	p.D27Y	ACGTTTGATTCCT		374	7	0.02	263	2	0.0076045627		86		10	0	0				T	110565264	G	T	110565264	3	4	96	1	0	0	0	0	1	0	0	0	7608	1290	45	3	81	3	IFT81	12	110565264	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	188979	110565264	23286631	353	6987											
KNTC1	9735	broad.mit.edu	37	chr12	123087235	123087235	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagctgcccaaactagactGccttttcacctgatattctt	5	13	3	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KNTC1	NM_014708	exon46	c.G4773T	p.L1591L	TAGACTGCCTTTT		251	7	0.03	195	0	0		182		46	0	0				T	123087235	G	T	123087235	2	4	96	1	0	0	0	0	0	0	0	1	8470	1306	46	2		2	KNTC1	12	123087235	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	12521971	123087235	10764660	354	6988											
UBC	7316	broad.mit.edu	37	chr12	125398024	125398024	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgctttgacgttctcgatGgtgtcactgggctcgacctc	11	11	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	UBC,colon,carcinoma,0,2	UBC	NM_021009	exon2	c.C294T	p.T98T	CTCGATGGTGTCA		349	5	0.01	199	0	0		79	2	1355	0	0				A	125398024	G	A	125398024	2	1	96	1	0	0	0	0	0	0	0	1	16902	1335	47	3		3	UBC	12	125398024	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2310789	125398024	8453871	355	6989											
GOLGA3	2802	broad.mit.edu	37	chr12	133351804	133351804	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcttcatgttgttcttcaGctccgacacttttgcctgga	9	11	4	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	GOLGA3	NM_005895	exon22	c.C4066A	p.L1356M	TCTTCAGCTCCGA		139	5	0.04	110	1	0.0090909091		234		26	0	0				T	133351804	G	T	133351804	3	4	96	1	0	0	0	0	1	0	0	0	6595	962	34	2	442	2	GOLGA3	12	133351804	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	7953780	133351804	500091	356	6990											
CENPJ	55835	hgsc.bcm.edu;broad.mit.edu	37	chr13	25480948	25480948	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atccattttaaacagcggctGgtcctcggaagtgctctggt	11	10	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_018451	exon7	c.C1228A	p.Q410K	GCGGCTGGTCCTC		111	6	0.05	122	0	0				3	0	0				T	25480948	G	T	25480948	3	4	96	1	0	0	0	0	1	0	0	0	3256	1357	47	3	2832	3	CENPJ	13	25480948	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10		25480948	89688930	357	6991											
FLT3	2322	broad.mit.edu	37	chr13	28578254	28578254	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catctctctgctgaaaggtcGcctgttttggtaggtgtgag	13	8	2	2	rs191501493	bycluster;by1000genomes	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	FLT3,colon,carcinoma,0,1	FLT3	NM_004119	exon24	c.C2917T	p.R973X	AAGGTCGCCTGTT		115	3	0.03	121	0	0		15525	1	3	0	0				A	28578254	G	A	28578254	4	1	96	1	0	0	0	0	0	1	0	0	5974	1095	38	1	68	1	FLT3	13	28578254	Nonsense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3097306	28578254	86591624	358	6992											
KPNA3	3839	broad.mit.edu	37	chr13	50306542	50306543	+	Frame_Shift_Ins	INS	-	-	A													gacatttgactagaattggtINSaaaatcccagattttattaa					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KPNA3	NM_002267	exon6	c.348_349insT	p.L116fs	AATTGGTAAAATC		399	9	0.02	451	0	0		53		8	0	0				A	50306543	-	A	50306542	7	5	96	1	0	1	1	0	0	0	0	0	8473	1635	57	0	1265	0	KPNA3	13	50306542	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	21728288	50306542	64863336	359	6993											
SLC15A1	6564	broad.mit.edu	37	chr13	99371514	99371514	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctacagccatgagagcaGcaggaaccccaaaggccagt	13	12	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLC15A1	NM_005073	exon8	c.C617A	p.A206D	AGAGCAGCAGGAA		112	3	0.03	104	0	0		92		2	0	0				T	99371514	G	T	99371514	3	4	96	1	0	0	0	0	1	0	0	0	14452	971	34	2	1573	2	SLC15A1	13	99371514	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	49064972	99371514	15798364	360	6994											
GRK1	6011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	114325882	114325882	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgcgccctcttctacacggCgcagatcatctgcggcctgg	12	16	4	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_002929	exon3	c.C896T	p.A299V	ACACGGCGCAGAT		25	8	0.32	30	0	0				0	0					T	114325882	C	T	114325882	3	4	96	1	0	0	0	0	1	0	0	0	6830	768	27	1	906	1	GRK1	13	114325882	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	14954368	114325882	843996	361	6995											
RPGRIP1	57096	broad.mit.edu	37	chr14	21756201	21756201	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatagatgctatacctctGgtgctaccagcctcaaaagg	9	11	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RPGRIP1	NM_020366	exon1	c.G66T	p.L22L	ACCTCTGGTGCTA		173	6	0.03	170	3	0.0176470588		213		0	0					T	21756201	G	T	21756201	2	4	96	1	0	0	0	0	0	0	0	1	13600	1335	47	3		3	RPGRIP1	14	21756201	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10		21756201	85593339	362	6996											
PSME2	5721	mdanderson.org	37	chr14	24612871	24612871	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgctcatgcaccaaggcccGgtaatccatctgcaatgtgg	10	13	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	PSME2,NS,carcinoma,0,3	PSME2	NM_002818	exon10	c.C562T	p.R188W	AGGCCCGGTAATC		58	3	0.05	53	0	0		0	3	643	1	0				A	24612871	G	A	24612871	3	1	96	1	0	0	0	0	1	0	0	0	12755	1115	39	1	165	1	PSME2	14	24612871	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2856670	24612871	82736669	363	6997											
ADCY4	196883	broad.mit.edu	37	chr14	24795332	24795332	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaagaacttggcatccccGgtgtccagttcatcatctag	10	11	3	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ADCY4	NM_001198592	exon13	c.C1608T	p.T536T	ATCCCCGGTGTCC		114	5	0.04	124	0	0		86		2	0	0				A	24795332	G	A	24795332	2	1	96	1	0	0	0	0	0	0	0	1	295	1103	39	1		1	ADCY4	14	24795332	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	182461	24795332	82554208	364	6998											
OTX2	5015	mdanderson.org	37	chr14	57268936	57268936	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctagaggggggagtgaattgGccacttgttccactctctga	13	9	1	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001270525	exon3	c.C411A	p.G137G	GAATTGGCCACTT		59	3	0.05	58	0	0				25	0	0				T	57268936	G	T	57268936	2	4	96	1	0	0	0	0	0	0	0	1	11367	1190	42	2		2	OTX2	14	57268936	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	32473604	57268936	50080604	365	6999											
YLPM1	56252	broad.mit.edu	37	chr14	75295965	75295965	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggaaacgtgactgggaGgccattgccagcagaatgga	14	7	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	YLPM1	NM_019589	exon19	c.G6213T	p.E2071D	CTGGGAGGCCATT		231	5	0.02	211	0	0		298		133	0	0				T	75295965	G	T	75295965	3	4	96	1	0	0	0	0	1	0	0	0	17545	991	35	3	6287	3	YLPM1	14	75295965	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	18027029	75295965	32053575	366	7000											
TECPR2	9895	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr14	102904488	102904488	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgcgttgccgggcgccgggCtgcgctggcagaagtttgaa	18	11	0	2	rs368111236	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001172631	exon10	c.C2524G	p.L842V	GCCGGGCTGCGCT		61	4	0.07	60	0	0				8	1	0.13				G	102904488	C	G	102904488	3	3	96	1	0	0	0	0	1	0	0	0	15802	796	28	5	2558	5	TECPR2	14	102904488	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	27608523	102904488	4445052	367	7001											
AHNAK2	113146	broad.mit.edu	37	chr14	105413995	105413995	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctgtcacttccgccttgGggcctttcaggtccagcttg	13	13	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	AHNAK2	NM_138420	exon7	c.C7793A	p.P2598H	GCCTTGGGGCCTT		237	4	0.02	210	1	0.0047619048		719		0	0					T	105413995	G	T	105413995	3	4	96	1	0	0	0	0	1	0	0	0	412	1232	43	3	9598	3	AHNAK2	14	105413995	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2509507	105413995	1935545	368	7002											
PLA2G4F	255189	mdanderson.org	37	chr15	42439368	42439368	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggccccagaggtcgatgAgggacacgctgtggccactg	17	11	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_213600	exon13	c.T1373C	p.L458P	TCGATGAGGGACA		52	3	0.06	59	0	0				0	0					G	42439368	A	G	42439368	3	3	96	1	0	0	0	0	1	0	0	0	12053	304	11	4	1208	4	PLA2G4F	15	42439368	Missense_Mutation	SNP	A	TCGA-VF-A8A8-01A-11D-A435-10		42439368	60092024	369	7003											
CAPN3	825	broad.mit.edu	37	chr15	42703172	42703172	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttgacagtttcatctgctGcttcgttaggctggagggca	12	9	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CAPN3	NM_000070	exon22	c.G2354T	p.C785F	TCTGCTGCTTCGT		66	5	0.08	70	0	0		172		9	0	0				T	42703172	G	T	42703172	3	4	96	1	0	0	0	0	1	0	0	0	2646	1319	46	2	2492	2	CAPN3	15	42703172	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	263804	42703172	59828220	370	7004											
SEMA6D	80031	broad.mit.edu	37	chr15	48058773	48058773	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcacttgtgttcctatgaaGgctgttaaccgaagacttct	9	9	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SEMA6D	NM_001198999	exon19	c.1647-1G>T	.	TATGAAGGCTGTT		102	4	0.04	150	0	0		322		0	0					T	48058773	G	T	48058773	5	4	96	1	0	0	0	0	0	0	1	0	14095	1014	35	3	1708	3	SEMA6D	15	48058773	Splice_Site	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	5355601	48058773	54472619	371	7005											
DMXL2	23312	mdanderson.org	37	chr15	51791559	51791559	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctgcctcttctgcattagAactatcagcttcagtgtctc	7	12	5	1	rs12102203	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	DMXL2,NS,carcinoma,0,1	DMXL2	NM_001174116	exon18	c.T3862A	p.S1288T	CATTAGAACTATC		84	3	0.04	118	0	0		0	1	0	0					T	51791559	A	T	51791559	3	4	96	1	0	0	0	0	1	0	0	0	4623	246	9	5	5355	5	DMXL2	15	51791559	Missense_Mutation	SNP	A	TCGA-VF-A8A8-01A-11D-A435-10	3732786	51791559	50739833	372	7006											
ZNF280D	54816	broad.mit.edu	37	chr15	56981569	56981569	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaatacagctgaggaatttGctccagaaacactttcgctg	9	9	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZNF280D	NM_017661	exon8	c.C599A	p.A200E	GAATTTGCTCCAG		193	5	0.03	211	1	0.0047393365		82		1	0	0				T	56981569	G	T	56981569	3	4	96	1	0	0	0	0	1	0	0	0	17874	1319	46	2	2400	2	ZNF280D	15	56981569	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	5190010	56981569	45549823	373	7007											
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr15	62212292	62212292	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagagtgaagaaggagcttTcttgacggctcaatatagat	11	6	3	5	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_020821	exon57	c.A7451G	p.E2484G	GAGCTTTCTTGAC		157	15	0.1	178	0	0				1	1	1				C	62212292	T	C	62212292	3	2	96	1	0	0	0	0	1	0	0	0	17250	1783	62	4	3954	4	VPS13C	15	62212292	Missense_Mutation	SNP	T	TCGA-VF-A8A8-01A-11D-A435-10	5230723	62212292	40319100	374	7008											
ZNF609	23060	broad.mit.edu	37	chr15	64791875	64791875	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtcctcaagggaaggaagGcaaatcaaaatccaaaagga	11	7	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZNF609	NM_015042	exon1	c.G257T	p.G86V	AGGAAGGCAAATC		223	3	0.01	239	0	0		106		1	0	0				T	64791875	G	T	64791875	3	4	96	1	0	0	0	0	1	0	0	0	18091	1203	42	2	259	2	ZNF609	15	64791875	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2579583	64791875	37739517	375	7009											
KBTBD13	390594	broad.mit.edu	37	chr15	65370090	65370090	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctcttcgtgtgcctgtggCggccggccgacaccaccgcc	13	17	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	KBTBD13,NS,carcinoma,0,1	KBTBD13	NM_001101362	exon1	c.C937T	p.R313W	CTGTGGCGGCCGG		25	2	0.08	32	0	0		9	1	0	0					T	65370090	C	T	65370090	3	4	96	1	0	0	0	0	1	0	0	0	8035	759	27	1	939	1	KBTBD13	15	65370090	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	578215	65370090	37161302	376	7010											
IDH3A	3419	mdanderson.org	37	chr15	78453923	78453923	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttttcttctgtataacagGccctttgaagaccccaatag	8	10	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_005530	exon5	c.G290T	p.G97V	TAACAGGCCCTTT		43	4	0.09	46	0	0				34	0	0				T	78453923	G	T	78453923	3	4	96	1	0	0	0	0	1	0	0	0	7539	1217	42	2	308	2	IDH3A	15	78453923	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	13083833	78453923	24077469	377	7011											
RASGRF1	5923	broad.mit.edu	37	chr15	79382723	79382723	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcgcgaaccacttggtttGccattttgtgttgtccgaac	10	11	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RASGRF1	NM_001145648	exon1	c.C118A	p.Q40K	TGGTTTGCCATTT		42	4	0.1	48	1	0.0208333333		168		0	0					T	79382723	G	T	79382723	3	4	96	1	0	0	0	0	1	0	0	0	13123	1328	46	2	3815	2	RASGRF1	15	79382723	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	928800	79382723	23148669	378	7012											
AKAP13	11214	broad.mit.edu	37	chr15	86266551	86266551	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcagcaggaaggttgaaaGgtaaggcttggctcttttgt	14	5	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	AKAP13	NM_006738	exon26	c.G6757T	p.E2253X	TTGAAAGGTAAGG		106	4	0.04	117	2	0.0170940171		394		2	0	0				T	86266551	G	T	86266551	5	4	96	1	0	0	0	0	0	0	1	0	446	1014	35	3	6913	3	AKAP13	15	86266551	Splice_Site	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	6883828	86266551	16264841	379	7013											
CHTF18	63922	mdanderson.org	37	chr16	839620	839620	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaatcccgtcctgaggcggCcccccatcttggaggactac	11	16	1	1	rs373908849		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_022092	exon4	c.C511T	p.P171S	AGGCGGCCCCCCA		32	3	0.09	31	0	0				55	0	0				T	839620	C	T	839620	3	4	96	1	0	0	0	0	1	0	0	0	3436	739	26	2	525	2	CHTF18	16	839620	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10		839620	89515133	380	7014											
UBE2I	7329	broad.mit.edu	37	chr16	1370230	1370230	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacccttcggggacagtgtgCctgtccatcttagaggagga	13	10	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	UBE2I	NM_003345	exon5	c.C279T	p.C93C	AGTGTGCCTGTCC		123	4	0.03	97	0	0		15		1001	1	0				T	1370230	C	T	1370230	2	4	96	1	0	0	0	0	0	0	0	1	16919	747	26	2		2	UBE2I	16	1370230	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	530610	1370230	88984523	381	7015											
MAPK8IP3	23162	mdanderson.org	37	chr16	1816287	1816287	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagaggaggccacagaggCcacggaggtgccagaccctg	15	13	0	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_015133	exon22	c.C2693T	p.A898V	CAGAGGCCACGGA		57	3	0.05	57	0	0				11	0	0				T	1816287	C	T	1816287	3	4	96	1	0	0	0	0	1	0	0	0	9335	739	26	2	2795	2	MAPK8IP3	16	1816287	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	446057	1816287	88538466	382	7016											
CORO7	79585	mdanderson.org	37	chr16	4414863	4414863	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgcagctcatgacggccagCgcctgccggggcacaagggc	15	15	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_024535	exon12	c.G957A	p.A319A	GGCCAGCGCCTGC		45	3	0.07	27	0	0				19	0	0				T	4414863	C	T	4414863	2	4	96	1	0	0	0	0	0	0	0	1	3782	755	27	1		1	CORO7	16	4414863	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	2598576	4414863	85939890	383	7017											
CIITA	4261	mdanderson.org	37	chr16	10989249	10989249	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	accacttctatgaccagatgGacctggctggagaagaagag	12	9	1	5	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_000246	exon2	c.G163T	p.D55Y	CAGATGGACCTGG		59	3	0.05	53	0	0				0	0					T	10989249	G	T	10989249	3	4	96	1	0	0	0	0	1	0	0	0	3450	1174	41	3	169	3	CIITA	16	10989249	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	6574386	10989249	79365504	384	7018											
ACSM2A	123876	broad.mit.edu	37	chr16	20477039	20477039	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggctggtgatcctgggctgCattcgagcaggttggtaact	15	8	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ACSM2A	NM_001010845	exon4	c.C378T	p.C126C	GGGCTGCATTCGA		290	4	0.01	330	3	0.0090909091		120		0	0					T	20477039	C	T	20477039	2	4	96	1	0	0	0	0	0	0	0	1	183	718	25	2		2	ACSM2A	16	20477039	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	9487790	20477039	69877714	385	7019											
CRYM	1428	broad.mit.edu	37	chr16	21272608	21272608	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacggtggtcttctcacagtGggctggtttcactcccttaa	10	12	3	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CRYM	NM_001888	exon9	c.C847A	p.H283N	CACAGTGGGCTGG		138	4	0.03	132	0	0		13		190	1	0.01				T	21272608	G	T	21272608	3	4	96	1	0	0	0	0	1	0	0	0	3944	1348	47	3	105	3	CRYM	16	21272608	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	795569	21272608	69082145	386	7020											
PALB2	79728	broad.mit.edu	37	chr16	23641321	23641321	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacacatgtctgtggtaggCctgtcattatcatcaggcgc	11	10	4	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PALB2	NM_024675	exon5	c.G2154T	p.R718S	GGTAGGCCTGTCA		129	5	0.04	125	4	0.032		108		8	0	0				A	23641321	C	A	23641321	3	1	96	1	0	0	0	0	1	0	0	0	11452	738	26	2	1442	2	PALB2	16	23641321	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	2368713	23641321	66713432	387	7021											
SULT1A2	6799	broad.mit.edu	37	chr16	28604855	28604855	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaagtggtagtaggaaaccGccacatcctttgcgttgcgg	13	9	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SULT1A2	NM_001054	exon5	c.C407A	p.A136E	GAAACCGCCACAT		162	4	0.02	161	0	0		27		3	0	0				T	28604855	G	T	28604855	3	4	96	1	0	0	0	0	1	0	0	0	15428	1087	38	1	496	1	SULT1A2	16	28604855	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	4963534	28604855	61749898	388	7022											
ASPHD1	253982	mdanderson.org	37	chr16	29913203	29913203	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggcccggctcgagggccGctgtgggcccaccaatgccc	16	16	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_181718	exon1	c.G911A	p.R304H	AGGGCCGCTGTGG		49	3	0.06	58	0	0				42	1	0.02				A	29913203	G	A	29913203	3	1	96	1	0	0	0	0	1	0	0	0	1053	1087	38	1	913	1	ASPHD1	16	29913203	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1308348	29913203	60441550	389	7023											
PRSS53	339105	broad.mit.edu	37	chr16	31097418	31097418	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacaggagcgtcctcctgGgcacagcttgatgcaaagct	12	12	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PRSS53	NM_001039503	exon6	c.C750A	p.A250A	CTCCTGGGCACAG		69	4	0.06	54	0	0		29		4	0	0				T	31097418	G	T	31097418	2	4	96	1	0	0	0	0	0	0	0	1	12680	1219	43	3		3	PRSS53	16	31097418	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1184215	31097418	59257335	390	7024											
PRSS36	146547	broad.mit.edu	37	chr16	31154780	31154780	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaggcccctggccgcgggGccttcccgcactctgagggg	16	17	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PRSS36	NM_001258291	exon8	c.C983A	p.A328D	CGCGGGGCCTTCC		68	5	0.07	48	1	0.0208333333		50		1	0	0				T	31154780	G	T	31154780	3	4	96	1	0	0	0	0	1	0	0	0	12673	1203	42	2	1616	2	PRSS36	16	31154780	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	57362	31154780	59199973	391	7025											
ABCC11	85320	broad.mit.edu	37	chr16	48244964	48244964	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcatcccctcagaagcatgCccgttcctctccagctccag	7	18	3	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ABCC11	NM_033151	exon10	c.G1503A	p.G501G	AGCATGCCCGTTC		133	3	0.02	125	1	0.008		177		0	0					T	48244964	C	T	48244964	2	4	96	1	0	0	0	0	0	0	0	1	51	726	26	2		2	ABCC11	16	48244964	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	17090184	48244964	42109789	392	7026											
CHD9	80205	broad.mit.edu	37	chr16	53243477	53243477	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtcatgtctgagaagaaGcagagaaaaaaggtggaatc	14	4	2	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CHD9	NM_025134	exon3	c.G1536T	p.K512N	GAAGAAGCAGAGA		203	3	0.01	218	0	0		203		0	0					T	53243477	G	T	53243477	3	4	96	1	0	0	0	0	1	0	0	0	3354	962	34	2	1542	2	CHD9	16	53243477	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	4998513	53243477	37111276	393	7027											
CDH5	1003	broad.mit.edu	37	chr16	66431946	66431947	+	Frame_Shift_Ins	INS	-	-	A													aagttttggatgagaatgacINSaatgccccggagtttgccaa					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	CDH5,NS,carcinoma,+1,1	CDH5	NM_001795	exon9	c.1422_1423insA	p.D474fs	GAATGACAATGCC		210	0	0	143	0	0		111	1	10	0	0				A	66431947	-	A	66431946	7	5	96	1	0	1	1	0	0	0	0	0	3135	477	17	0	1452	0	CDH5	16	66431946	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	13188469	66431946	23922807	394	7028											
ELMO3	79767	broad.mit.edu	37	chr16	67236569	67236569	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagctggcccgcactctgGccctgaagcccacttccctg	10	18	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ELMO3	NM_024712	exon15	c.G1597T	p.A533S	ACTCTGGCCCTGA		172	3	0.02	164	0	0		41		29	0	0				T	67236569	G	T	67236569	3	4	96	1	0	0	0	0	1	0	0	0	5095	1203	42	2	1655	2	ELMO3	16	67236569	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	804623	67236569	23118184	395	7029											
RLTPR	146206	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr16	67683478	67683478	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgccatgggggacgcgggCgccaagttgctggccaaggc	17	12	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001013838	exon20	c.C1875A	p.G625G	CGCGGGCGCCAAG		19	9	0.47	18	0	0				11	3	0.27				A	67683478	C	A	67683478	2	1	96	1	0	0	0	0	0	0	0	1	13445	755	27	1		1	RLTPR	16	67683478	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	446909	67683478	22671275	396	7030											
EDC4	23644	mdanderson.org	37	chr16	67913787	67913787	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcagcagcggtaGcagcagcagcagcagcagta	14	12	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_014329	exon16	c.G1856T	p.S619I	GCGGTAGCAGCAG		59	5	0.08	56	0	0				38	0	0				T	67913787	G	T	67913787	3	4	96	1	0	0	0	0	1	0	0	0	4934	971	34	2	1918	2	EDC4	16	67913787	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	230309	67913787	22440966	397	7031											
CLEC18C	283971	broad.mit.edu	37	chr16	70211324	70211324	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tatggtttgcagaggggcagCggtacagccacgcggcagga	17	9	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CLEC18C	NM_173619	exon3	c.C397T	p.R133W	GGGCAGCGGTACA		324	4	0.01	327	0	0		15		2	0	0				T	70211324	C	T	70211324	3	4	96	1	0	0	0	0	1	0	0	0	3527	759	27	1	407	1	CLEC18C	16	70211324	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	2297537	70211324	20143429	398	7032											
HPR	3250	broad.mit.edu	37	chr16	72110394	72110394	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgaaccattcagaaaatgCaacagcgaaagacattgccc	7	12	1	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	HPR_ENST00000228226,NS,carcinoma,0,2	HPR	NM_020995	exon5	c.C461T	p.A154V	AAAATGCAACAGC		364	5	0.01	383	1	0.0026109661		43	2	0	0					T	72110394	C	T	72110394	3	4	96	1	0	0	0	0	1	0	0	0	7377	710	25	2	479	2	HPR	16	72110394	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	1899070	72110394	18244359	399	7033											
CHST5	23563	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr16	75563911	75563911	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatcaaacacgtccatgtcGcacaaaaagatagagcgcat	8	11	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_024533	exon3	c.C372A	p.C124X	CATGTCGCACAAA		116	9	0.08	109	0	0				0	0					T	75563911	G	T	75563911	4	4	96	1	0	0	0	0	0	1	0	0	3429	1079	38	1	867	1	CHST5	16	75563911	Nonsense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3453517	75563911	14790842	400	7034											
PKD1L2	114780	broad.mit.edu	37	chr16	81204552	81204552	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgggagctactcacctggGccgagggtgtgagttcctta	15	9	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PKD1L2	NM_001076780	exon17	c.C2906A	p.A969D	ACCTGGGCCGAGG		100	3	0.03	107	0	0		361		0	0					T	81204552	G	T	81204552	3	4	96	1	0	0	0	0	1	0	0	0	12012	1203	42	2	4650	2	PKD1L2	16	81204552	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	5640641	81204552	9150201	401	7035											
FAM92B	339145	mdanderson.org	37	chr16	85139014	85139014	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcggctggagtccacagcGgccctctgcactctggtctc	13	15	3	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_198491	exon5	c.C456A	p.A152A	CACAGCGGCCCTC		40	3	0.08	48	0	0				0	0					T	85139014	G	T	85139014	2	4	96	1	0	0	0	0	0	0	0	1	5685	1103	39	1		1	FAM92B	16	85139014	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3934462	85139014	5215739	402	7036											
INPP5K	51763	broad.mit.edu	37	chr17	1410277	1410277	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccactccctcctcacctgGtgtcatagtcgttggagttc	8	16	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	INPP5K	NM_016532	exon7	c.C773A	p.T258N	CACCTGGTGTCAT		196	4	0.02	134	0	0		30		65	0	0				T	1410277	G	T	1410277	3	4	96	1	0	0	0	0	1	0	0	0	7803	1261	44	3	597	3	INPP5K	17	1410277	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10		1410277	79784933	403	7037											
RILP	83547	broad.mit.edu	37	chr17	1549758	1549758	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcctctggggcggctgagGcccccagacaaaggtgttcg	16	12	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RILP	NM_031430	exon8	c.C1184A	p.A395D	GCTGAGGCCCCCA		169	5	0.03	120	0	0		24		41	0	0				T	1549758	G	T	1549758	3	4	96	1	0	0	0	0	1	0	0	0	13409	1203	42	2	25	2	RILP	17	1549758	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	139481	1549758	79645452	404	7038											
ZZEF1	23140	broad.mit.edu	37	chr17	3975931	3975931	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attccggtgtgggtgagtggGccagcttgcttctaattcca	13	9	1	1	rs370550753	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZZEF1	NM_015113	exon25	c.C3805T	p.P1269S	GAGTGGGCCAGCT		214	4	0.02	181	0	0		195		1	0	0				A	3975931	G	A	3975931	3	1	96	1	0	0	0	0	1	0	0	0	18294	1203	42	2	5204	2	ZZEF1	17	3975931	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2426173	3975931	77219279	405	7039											
ARRB2	409	broad.mit.edu	37	chr17	4619841	4619841	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaacccaccccggccccccAcccgcctgcaggaccggctg	9	24	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ARRB2	NM_001257329	exon5	c.A295C	p.T99P	CCCCCCACCCGCC		66	21	0.32	46	14	0.3043478261		30		36	2	0.06				C	4619841	A	C	4619841	3	2	96	1	0	0	0	0	1	0	0	0	980	159	6	4	313	4	ARRB2	17	4619841	Missense_Mutation	SNP	A	TCGA-VF-A8A8-01A-11D-A435-10	643910	4619841	76575369	406	7040											
ZMYND15	84225	broad.mit.edu	37	chr17	4645281	4645281	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgcggacatggggtccccGgccaggcttcacctttgctt	12	13	1	0	rs143837890	bycluster;byfrequency;by1000genomes	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZMYND15	NM_001136046	exon4	c.G899A	p.R300Q	GTCCCCGGCCAGG		328	4	0.01	221	0	0		87		0	0					A	4645281	G	A	4645281	3	1	96	1	0	0	0	0	1	0	0	0	17765	1116	39	1	909	1	ZMYND15	17	4645281	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	25440	4645281	76549929	407	7041											
ENO3	2027	broad.mit.edu	37	chr17	4858517	4858517	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acctcaagggggtcatcaagGccaagtatgggaaggatgcc	14	9	3	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ENO3	NM_001976	exon7	c.G592T	p.A198S	ATCAAGGCCAAGT		232	5	0.02	152	0	0		36		46	0	0				T	4858517	G	T	4858517	3	4	96	1	0	0	0	0	1	0	0	0	5151	1203	42	2	614	2	ENO3	17	4858517	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	213236	4858517	76336693	408	7042											
NLRP1	22861	broad.mit.edu	37	chr17	5461937	5461937	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggttcctcccctgagacagCcggcagtgaaagatgttctc	11	12	1	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NLRP1	NM_033007	exon4	c.G2079A	p.R693R	AGACAGCCGGCAG		156	3	0.02	132	1	0.0075757576		358		0	0					T	5461937	C	T	5461937	2	4	96	1	0	0	0	0	0	0	0	1	10517	726	26	2		2	NLRP1	17	5461937	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	603420	5461937	75733273	409	7043											
TEKT1	83659	broad.mit.edu	37	chr17	6733661	6733662	+	Frame_Shift_Ins	INS	-	-	G													aatgtgccactctgagggcaINSggaacttgggtggaggttgt					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TEKT1	NM_053285	exon2	c.35_36insC	p.L12fs	GAGGGCAGGAACT		448	8	0.02	287	0	0		49		0	0					G	6733662	-	G	6733661	7	5	96	1	0	1	1	0	0	0	0	0	15810	188	7	0	1249	0	TEKT1	17	6733661	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	1271724	6733661	74461549	410	7044											
DLG4	1742	broad.mit.edu	37	chr17	7097791	7097791	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggaagccgcagtccttgGtcttgtcgtaatcaaacagg	11	10	3	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DLG4	NM_001365	exon14	c.C1454A	p.T485N	TCCTTGGTCTTGT		203	5	0.02	130	2	0.0153846154		110		11	0	0				T	7097791	G	T	7097791	3	4	96	1	0	0	0	0	1	0	0	0	4585	1261	44	3	885	3	DLG4	17	7097791	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	364130	7097791	74097419	411	7045											
ACADVL	37	broad.mit.edu	37	chr17	7126059	7126059	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctttgatggagtacgggtgCcatcggagaacgtgctgggt	16	7	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ACADVL	NM_001270447	exon11	c.C1021T	p.P341S	CGGGTGCCATCGG		169	3	0.02	119	1	0.0084033613		43		364	0	0				T	7126059	C	T	7126059	3	4	96	1	0	0	0	0	1	0	0	0	116	739	26	2	990	2	ACADVL	17	7126059	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	28268	7126059	74069151	412	7046											
EIF5A	1984	broad.mit.edu	37	chr17	7214926	7214926	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtctgccatgacagaggaGgcagctgttgcaatcaaggc	13	10	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	EIF5A	NM_001143760	exon5	c.G522T	p.E174D	AGAGGAGGCAGCT		223	3	0.01	170	0	0		28		5067	0	0				T	7214926	G	T	7214926	3	4	96	1	0	0	0	0	1	0	0	0	5069	991	35	3	540	3	EIF5A	17	7214926	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	88867	7214926	73980284	413	7047											
SHBG	6462	broad.mit.edu	37	chr17	7533538	7533538	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgcgcctgctgctgttgctGctgttgctactactgcgtca	11	13	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SHBG	NM_001040	exon1	c.G48T	p.L16L	GTTGCTGCTGTTG		105	4	0.04	64	0	0		21		0	0					T	7533538	G	T	7533538	2	4	96	1	0	0	0	0	0	0	0	1	14323	1306	46	2		2	SHBG	17	7533538	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	318612	7533538	73661672	414	7048											
KRBA2	124751	broad.mit.edu	37	chr17	8272513	8272513	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctgaagcttcaggagtgGgatccatgtcatcgtccata	11	9	3	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KRBA2	NM_213597	exon2	c.C1418A	p.P473H	GGAGTGGGATCCA		256	6	0.02	158	0	0		34		6	0	0				T	8272513	G	T	8272513	3	4	96	1	0	0	0	0	1	0	0	0	8482	1232	43	3	64	3	KRBA2	17	8272513	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	738975	8272513	72922697	415	7049											
GAS7	8522	mdanderson.org	37	chr17	10101685	10101685	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccggagaaggggtacaggGtccggcagcgagcgccggac	18	13	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_201433	exon1	c.C23A	p.T8N	TACAGGGTCCGGC		17	2	0.12	10	0	0				11	0	0				T	10101685	G	T	10101685	3	4	96	1	0	0	0	0	1	0	0	0	6289	1261	44	3	1521	3	GAS7	17	10101685	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1829172	10101685	71093525	416	7050											
MYH3	4621	broad.mit.edu	37	chr17	10545596	10545597	+	Frame_Shift_Ins	INS	-	-	CC													tttggaaggaagaacccttcINSttcttggcaactttcttctt					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MYH3	NM_002470	exon17	c.1920_1921insGG	p.K640fs	ACCCTTCTTCTTG		848	4	0	571	0	0		227		2	0	0				CC	10545597	-	CC	10545596	7	5	96	1	0	1	1	0	0	0	0	0	10083	912	32	0	4002	0	MYH3	17	10545596	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	443911	10545596	70649614	417	7051											
DNAH9	1770	broad.mit.edu	37	chr17	11648286	11648286	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catcttcatgggcctgatcgGggacctctttcccgccctgg	11	15	3	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DNAH9	NM_001372	exon31	c.G6284A	p.G2095E	TGATCGGGGACCT		236	3	0.01	173	0	0		695		0	0					A	11648286	G	A	11648286	3	1	96	1	0	0	0	0	1	0	0	0	4635	1232	43	3	6406	3	DNAH9	17	11648286	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1102690	11648286	69546924	418	7052											
COX10	1352	broad.mit.edu	37	chr17	14095488	14095488	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcggagctgtggttggggCcatcccgcctgtcatgggct	17	11	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	COX10	NM_001303	exon6	c.C878T	p.A293V	TTGGGGCCATCCC		318	4	0.01	262	0	0		36		21	0	0				T	14095488	C	T	14095488	3	4	96	1	0	0	0	0	1	0	0	0	3785	739	26	2	900	2	COX10	17	14095488	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	2447202	14095488	67099722	419	7053											
TTC19	54902	broad.mit.edu	37	chr17	15930740	15930740	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcactgaagcaagcaaaGctgaaaaaagatgaaatttc	9	6	0	4	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TTC19	NM_017775	exon10	c.G1047T	p.K349N	AGCAAAGCTGAAA		241	7	0.03	148	0	0		10		177	0	0				T	15930740	G	T	15930740	3	4	96	1	0	0	0	0	1	0	0	0	16747	962	34	2	1448	2	TTC19	17	15930740	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1835252	15930740	65264470	420	7054											
UBB	7314	broad.mit.edu	37	chr17	16285329	16285330	+	Frame_Shift_Ins	INS	-	-	C													tccaggataaggaaggcattINSccccccgaccagcagaggct					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	UBB	NM_018955	exon2	c.108_109insC	p.I36fs	AGGCATTCCCCCC		208	6	0.03	125	0	0		30		5465	0	0				C	16285330	-	C	16285329	7	5	96	1	0	1	1	0	0	0	0	0	16901	1771	62	0	110	0	UBB	17	16285329	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	354589	16285329	64909881	421	7055											
FLII	2314	broad.mit.edu	37	chr17	18155412	18155412	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccactcagcggcacggtctgCgggcttgggcggcatgacca	15	14	2	1	rs377757631		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	FLII,right_upper_lobe,carcinoma,+1,1	FLII	NM_002018	exon11	c.G1147A	p.A383T	GGTCTGCGGGCTT		209	4	0.02	140	1	0.0071428571		79	1	86	0	0				T	18155412	C	T	18155412	3	4	96	1	0	0	0	0	1	0	0	0	5957	768	27	1	2742	1	FLII	17	18155412	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	1870083	18155412	63039798	422	7056											
SARM1	23098	broad.mit.edu	37	chr17	26712058	26712058	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctcctccgtggggtgcaGgttctttagggagctcacgg	14	11	3	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SARM1	NM_015077	exon6	c.1392-1G>T	.	GGTGCAGGTTCTT		288	6	0.02	173	0	0		40		0	0					T	26712058	G	T	26712058	5	4	96	1	0	0	0	0	0	0	1	0	13894	1014	35	3	1410	3	SARM1	17	26712058	Splice_Site	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	8556646	26712058	54483152	423	7057											
KIAA0100	9703	broad.mit.edu	37	chr17	26964021	26964021	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgataggtgatggagaGcatggaaaggctgagcactg	17	5	0	4	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KIAA0100	NM_014680	exon15	c.C1939A	p.L647I	TGGAGAGCATGGA		238	3	0.01	162	0	0		175		13	0	0				T	26964021	G	T	26964021	3	4	96	1	0	0	0	0	1	0	0	0	8195	971	34	2	4868	2	KIAA0100	17	26964021	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	251963	26964021	54231189	424	7058											
CPD	1362	broad.mit.edu	37	chr17	28754503	28754503	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcagatcacagatcctacGcaaccagaaactattgctgt	7	11	2	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CPD	NM_001304	exon7	c.G1944T	p.T648T	TCCTACGCAACCA		234	4	0.02	163	2	0.0122699387		89		6	0	0				T	28754503	G	T	28754503	2	4	96	1	0	0	0	0	0	0	0	1	3821	1074	38	1		1	CPD	17	28754503	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1790482	28754503	52440707	425	7059											
NF1	4763	broad.mit.edu	37	chr17	29664506	29664506	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccttccgttccagttaccGggacaggtcattctctcctg	9	14	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NF1	NM_001042492	exon43	c.G6548T	p.R2183L	GTTACCGGGACAG		228	4	0.02	133	0	0		1586		6	0	0				T	29664506	G	T	29664506	3	4	96	1	0	0	0	0	1	0	0	0	10402	1116	39	1	6779	1	NF1	17	29664506	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	910003	29664506	51530704	426	7060											
CDK5R1	8851	broad.mit.edu	37	chr17	30815393	30815393	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caagcccttcctggtggagaGctgcaaggaggccttttggg	15	10	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CDK5R1	NM_003885	exon2	c.G755T	p.S252I	TGGAGAGCTGCAA		277	5	0.02	223	0	0		30		4	0	0				T	30815393	G	T	30815393	3	4	96	1	0	0	0	0	1	0	0	0	3165	971	34	2	757	2	CDK5R1	17	30815393	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1150887	30815393	50379817	427	7061											
KRT24	192666	broad.mit.edu	37	chr17	38854821	38854821	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagaacagcttccagatctTgagtcaccagataccagatc	7	13	2	5	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KRT24	NM_019016	exon7	c.A1443G	p.S481S	AGATCTTGAGTCA		510	6	0.01	317	1	0.0031545741		60		0	0					C	38854821	T	C	38854821	2	2	96	1	0	0	0	0	0	0	0	1	8503	1799	63	4		4	KRT24	17	38854821	Silent	SNP	T	TCGA-VF-A8A8-01A-11D-A435-10	8039428	38854821	42340389	428	7062											
KRT15	3866	broad.mit.edu	37	chr17	39673161	39673161	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctcatccaggactcggcGcaagccgttgatgtcagcct	11	14	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KRT15	NM_002275	exon3	c.C637A	p.R213S	CTCGGCGCAAGCC		77	3	0.04	63	1	0.0158730159		60		9	0	0				T	39673161	G	T	39673161	3	4	96	1	0	0	0	0	1	0	0	0	8494	1087	38	1	757	1	KRT15	17	39673161	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	818340	39673161	41522049	429	7063											
HAP1	9001	broad.mit.edu	37	chr17	39888331	39888331	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgagtagagctggaggaGctcatcccgcaagttcacct	11	11	3	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	HAP1	NM_001079870	exon4	c.C778A	p.L260I	GGAGGAGCTCATC		161	4	0.02	109	0	0		48		1	0	0				T	39888331	G	T	39888331	3	4	96	1	0	0	0	0	1	0	0	0	6993	971	34	2	1137	2	HAP1	17	39888331	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	215170	39888331	41306879	430	7064											
GHDC	84514	broad.mit.edu	37	chr17	40342275	40342275	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acctcgtagtggggagcagaGcccgcagaggaatctgtgaa	15	9	1	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	GHDC	NM_001142623	exon9	c.C1391A	p.A464D	AGCAGAGCCCGCA		212	3	0.01	143	0	0		63		27	0	0				T	40342275	G	T	40342275	3	4	96	1	0	0	0	0	1	0	0	0	6410	971	34	2	298	2	GHDC	17	40342275	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	453944	40342275	40852935	431	7065											
C17orf53	78995	broad.mit.edu	37	chr17	42226163	42226163	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctactccctcaaggactaGctctggattatttcctcgga	7	12	3	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	C17orf53	NM_001171251	exon3	c.G992T	p.S331I	GGACTAGCTCTGG		261	9	0.03	161	1	0.0062111801		59		40	0	0				T	42226163	G	T	42226163	3	4	96	1	0	0	0	0	1	0	0	0	1871	971	34	2	1002	2	C17orf53	17	42226163	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1883888	42226163	38969047	432	7066											
GRN	2896	broad.mit.edu	37	chr17	42427035	42427035	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtttctctgtgttccacagGccgtggcatgcggggatggc	16	10	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	GRN	NM_002087	exon4	c.G265T	p.A89S	CCACAGGCCGTGG		231	4	0.02	130	0	0		51		226	0	0				T	42427035	G	T	42427035	5	4	96	1	0	0	0	0	0	0	1	0	6844	1217	42	2	275	2	GRN	17	42427035	Splice_Site	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	200872	42427035	38768175	433	7067											
HEXIM1	10614	broad.mit.edu	37	chr17	43227331	43227331	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgatgggatgggaggggaCggcagcgagtttctgcagcg	20	7	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	HEXIM1	NM_006460	exon1	c.C774T	p.D258D	AGGGGACGGCAGC		207	3	0.01	156	0	0		25		29	0	0				T	43227331	C	T	43227331	2	4	96	1	0	0	0	0	0	0	0	1	7116	535	19	1		1	HEXIM1	17	43227331	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	800296	43227331	37967879	434	7068											
WNT9B	7484	broad.mit.edu	37	chr17	44953813	44953813	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggcccctgccaggcaggGcagcctcaccaaaggcctgg	15	15	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	WNT9B	NM_003396	exon4	c.G803A	p.G268D	GGCAGGGCAGCCT		205	4	0.02	118	1	0.0084745763		37		0	0					A	44953813	G	A	44953813	3	1	96	1	0	0	0	0	1	0	0	0	17458	1203	42	2	817	2	WNT9B	17	44953813	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1726482	44953813	36241397	435	7069											
NGFR	4804	broad.mit.edu	37	chr17	47590258	47590258	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgccctgcttgcaagctggGccacccaggacagcgccaca	12	17	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NGFR	NM_002507	exon6	c.G1171T	p.A391S	AGCTGGGCCACCC		151	6	0.04	93	2	0.0215053763		46		32	0	0				T	47590258	G	T	47590258	3	4	96	1	0	0	0	0	1	0	0	0	10442	1203	42	2	1193	2	NGFR	17	47590258	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	2636445	47590258	33604952	436	7070											
SLC35B1	10237	broad.mit.edu	37	chr17	47780277	47780277	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgatgggattggcgaagaGgatcacagaggccaaaattg	15	6	1	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLC35B1	NM_005827	exon8	c.C859A	p.L287I	CGAAGAGGATCAC		234	4	0.02	154	0	0		21		813	0	0				T	47780277	G	T	47780277	3	4	96	1	0	0	0	0	1	0	0	0	14629	1000	35	3	117	3	SLC35B1	17	47780277	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	190019	47780277	33414933	437	7071											
DLX3	1747	hgsc.bcm.edu	37	chr17	48069062	48069063	+	Frame_Shift_Ins	INS	-	-	G													cggcgggggcagctgactgcINSgggcaggggccggagtggag					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DLX3	NM_005220	exon3	c.683_684insC	p.R228fs	TGACTGCGGGCAG		127	8	0.06	77	0	0		28		1	0	0				G	48069063	-	G	48069062	7	5	96	1	0	1	1	0	0	0	0	0	4600	768	27	0	184	0	DLX3	17	48069062	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	288785	48069062	33126148	438	7072											
TOB1	10140	broad.mit.edu	37	chr17	48941031	48941031	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacatccattttcattattAtcatccacgtaaagcacctt	2	12	3	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TOB1	NM_005749	exon2	c.T348C	p.D116D	ATTATTATCATCC		274	3	0.01	216	0	0		40		52	0	0				G	48941031	A	G	48941031	2	3	96	1	0	0	0	0	0	0	0	1	16406	446	16	4		4	TOB1	17	48941031	Silent	SNP	A	TCGA-VF-A8A8-01A-11D-A435-10	871969	48941031	32254179	439	7073											
PPM1E	22843	hgsc.bcm.edu	37	chr17	56833454	56833454	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcggcggcggcgagccggaGccggaacccgaacccgaacc	16	16	0	0	rs77856248		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	PPM1E,colon,carcinoma,0,1	PPM1E	NM_014906	exon1	c.G96A	p.E32E	GCCGGAGCCGGAA		212	15	0.07	122	0	0		0	1	0	0					A	56833454	G	A	56833454	2	1	96	1	0	0	0	0	0	0	0	1	12386	962	34	2		2	PPM1E	17	56833454	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	7892423	56833454	24361756	440	7074											
USP32	84669	broad.mit.edu	37	chr17	58286906	58286906	+	Splice_Site	DEL	T	T	-													catattttgctatggtccacTataaatataagagaagtcac					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	USP32	NM_032582	exon23	c.2425-2A>-	.	GTCCACTATAAAT		584	7	0.01	416	0	0		128		1	0	0				-	58286906	T	-	58286906	8	5	96	1	0	1	0	1	0	0	1	0	17122	1536	53	0	2443	0	USP32	17	58286906	Splice_Site	DEL	T	TCGA-VF-A8A8-01A-11D-A435-10	1453452	58286906	22908304	441	7075											
ABCA5	23461	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	67251698	67251698	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcatacctggcctgaagttgGttcaatatcaccaaccagaa	7	11	3	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ABCA5	NM_018672	exon30	c.C4054G	p.P1352A	AAGTTGGTTCAAT		596	17	0.03	438	0	0		162		3	0	0				C	67251698	G	C	67251698	3	2	96	1	0	0	0	0	1	0	0	0	35	1261	44	5	910	5	ABCA5	17	67251698	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	8964792	67251698	13943512	442	7076											
SPHK1	8877	broad.mit.edu	37	chr17	74382929	74382929	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctcctgaccaactgcacGctattgctgtgccgccggct	10	16	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	SPHK1,NS,carcinoma,0,1	SPHK1	NM_182965	exon6	c.G675T	p.T225T	CTGCACGCTATTG		123	3	0.02	71	0	0		24	1	36	0	0				T	74382929	G	T	74382929	2	4	96	1	0	0	0	0	0	0	0	1	15101	1074	38	1		1	SPHK1	17	74382929	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	7131231	74382929	6812281	443	7077											
ST6GALNAC1	55808	broad.mit.edu	37	chr17	74625146	74625146	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcctcaaaatcccaccgaGgctcagatttgaagttggcg	9	11	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ST6GALNAC1	NM_018414	exon2	c.C779A	p.P260H	CACCGAGGCTCAG		275	4	0.01	205	0	0		42		2	0	0				T	74625146	G	T	74625146	3	4	96	1	0	0	0	0	1	0	0	0	15278	1000	35	3	1055	3	ST6GALNAC1	17	74625146	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	242217	74625146	6570064	444	7078											
MGAT5B	146664	broad.mit.edu	37	chr17	74928843	74928843	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtggtgtacggcaaggagGcgagcatctggaaggtgagc	18	8	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MGAT5B	NM_198955	exon10	c.G1441T	p.A481S	AAGGAGGCGAGCA		181	3	0.02	133	0	0		98		1	0	0				T	74928843	G	T	74928843	3	4	96	1	0	0	0	0	1	0	0	0	9598	1203	42	2	1551	2	MGAT5B	17	74928843	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	303697	74928843	6266367	445	7079											
B3GNTL1	146712	broad.mit.edu	37	chr17	80915311	80915311	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgttccagatggtgaaggccGcccagcggggcagggcctgc	17	13	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	B3GNTL1	NM_001009905	exon9	c.C785A	p.A262E	AAGGCCGCCCAGC		178	4	0.02	113	0	0		40		4	0	0				T	80915311	G	T	80915311	3	4	96	1	0	0	0	0	1	0	0	0	1263	1087	38	1	316	1	B3GNTL1	17	80915311	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	5986468	80915311	279899	446	7080											
PTPRM	5797	broad.mit.edu	37	chr18	7774226	7774226	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gacttcaattgggagcaagtGaacaccttgactaaaccgac	9	10	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	PTPRM,NS,carcinoma,+2,1	PTPRM	NM_001105244	exon2	c.G153T	p.V51V	GCAAGTGAACACC		152	4	0.03	137	0	0		185	1	2	0	0				T	7774226	G	T	7774226	2	4	96	1	0	0	0	0	0	0	0	1	12857	1277	45	3		3	PTPRM	18	7774226	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10		7774226	70303022	447	7081											
CEP192	55125	broad.mit.edu	37	chr18	13048962	13048962	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attgcttcagccattgcagaGgcatcagttaatactgatcc	8	10	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CEP192	NM_032142	exon16	c.G2172T	p.E724D	TGCAGAGGCATCA		139	3	0.02	131	1	0.0076335878		340		2	0	0				T	13048962	G	T	13048962	3	4	96	1	0	0	0	0	1	0	0	0	3273	991	35	3	2230	3	CEP192	18	13048962	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	5274736	13048962	65028286	448	7082											
SLC14A2	8170	broad.mit.edu	37	chr18	43248365	43248365	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatggggtgctggtggggctGctgatggccgtgttctcaga	18	7	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	SLC14A2,NS,carcinoma,+2,1	SLC14A2	NM_001242692	exon16	c.G1959A	p.L653L	GGGGCTGCTGATG		143	4	0.03	135	0	0		121	1	1	0	0				A	43248365	G	A	43248365	2	1	96	1	0	0	0	0	0	0	0	1	14451	1306	46	2		2	SLC14A2	18	43248365	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	30199403	43248365	34828883	449	7083											
ATP8B1	5205	broad.mit.edu	37	chr18	55355660	55355660	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtggtggttctagcttttgCgggtgtgtccttctcagcat	13	8	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	ATP8B1,NS,carcinoma,0,2	ATP8B1	NM_005603	exon13	c.G1300A	p.A434T	CTTTTGCGGGTGT		215	5	0.02	208	1	0.0048076923		126	2	2	0	0				T	55355660	C	T	55355660	3	4	96	1	0	0	0	0	1	0	0	0	1192	768	27	1	2519	1	ATP8B1	18	55355660	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	12107295	55355660	22721588	450	7084											
MYO1F	4542	broad.mit.edu	37	chr19	8609310	8609310	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgtggcgtgcatggtggcGcacacgtcgtccaagacgct	14	14	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MYO1F	NM_012335	exon14	c.C1395T	p.C465C	GGTGGCGCACACG		63	3	0.05	56	0	0		128		5	0	0				A	8609310	G	A	8609310	2	1	96	1	0	0	0	0	0	0	0	1	10120	1079	38	1		1	MYO1F	19	8609310	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10		8609310	50519673	451	7085											
OR2Z1	284383	broad.mit.edu	37	chr19	8841539	8841539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgttcttctcttcttgatccGtgtggactcccggctccata	8	14	3	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	OR2Z1,NS,carcinoma,0,1	OR2Z1	NM_001004699	exon1	c.G149A	p.R50H	TGATCCGTGTGGA		199	3	0.02	187	0	0		53	1	0	0					A	8841539	G	A	8841539	3	1	96	1	0	0	0	0	1	0	0	0	11083	1145	40	1	151	1	OR2Z1	19	8841539	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	232229	8841539	50287444	452	7086											
MAST1	22983	broad.mit.edu	37	chr19	12969240	12969240	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgataccatcaagctcataaGcaacggtgcctacgggtgag	11	11	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MAST1	NM_014975	exon11	c.G1142T	p.S381I	TCATAAGCAACGG		181	3	0.02	156	0	0		214		1	0	0				T	12969240	G	T	12969240	3	4	96	1	0	0	0	0	1	0	0	0	9373	971	34	2	1184	2	MAST1	19	12969240	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	4127701	12969240	46159743	453	7087											
ATP13A1	57130	mdanderson.org	37	chr19	19767903	19767903	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgccaccagcatggatagcGtaaagacgctgtagtaccag	11	11	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_020410	exon5	c.C806A	p.T269K	GATAGCGTAAAGA		49	3	0.06	63	0	0				13	0	0				T	19767903	G	T	19767903	3	4	96	1	0	0	0	0	1	0	0	0	1122	1145	40	1	2896	1	ATP13A1	19	19767903	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	6798663	19767903	39361080	454	7088											
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	22156903	22156903	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cattctttacatttgtagggCttctctccagcatgaattgc	7	10	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_007153	exon4	c.G933A	p.K311K	GTAGGGCTTCTCT		115	58	0.5	95	0	0				1	0	0				T	22156903	C	T	22156903	2	4	96	1	0	0	0	0	0	0	0	1	17823	796	28	2		2	ZNF208	19	22156903	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	2389000	22156903	36972080	455	7089											
CCNE1	898	broad.mit.edu	37	chr19	30308069	30308069	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacaataatgcagtctgtgCagacccctgctccctgatcc	9	14	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CCNE1	NM_001238	exon5	c.C206T	p.A69V	TCTGTGCAGACCC		112	3	0.03	123	1	0.0081300813		49		44	0	0				T	30308069	C	T	30308069	3	4	96	1	0	0	0	0	1	0	0	0	2942	710	25	2	220	2	CCNE1	19	30308069	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	8151166	30308069	28820914	456	7090											
ACTN4	81	mdanderson.org	37	chr19	39191305	39191305	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagatcgagaacattgatgaGgacttccgagacgggctcaa	12	9	1	5	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_004924	exon2	c.G228T	p.E76D	TGATGAGGACTTC		52	3	0.06	49	0	0				183	0	0				T	39191305	G	T	39191305	3	4	96	1	0	0	0	0	1	0	0	0	207	991	35	3	234	3	ACTN4	19	39191305	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	8883236	39191305	19937678	457	7091											
CAPN12	147968	broad.mit.edu	37	chr19	39228218	39228219	+	Frame_Shift_Ins	INS	-	-	G													ggctggggcccagcacctccINSgggctcagcgagcagatctg					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CAPN12	NM_144691	exon9	c.1026_1027insC	p.P342fs	CACCTCCGGGCTC		161	6	0.04	131	0	0		43		4	0	0				G	39228219	-	G	39228218	7	5	96	1	0	1	1	0	0	0	0	0	2643	639	23	0	1185	0	CAPN12	19	39228218	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	36913	39228218	19900765	458	7092											
SUPT5H	6829	broad.mit.edu	37	chr19	39965024	39965024	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagctaccaccctacaccGtcgcccatggcctatcaggt	8	18	1	0	rs376597898		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SUPT5H	NM_003169	exon26	c.G2802A	p.P934P	TACACCGTCGCCC		244	6	0.02	213	0	0		119		491	0	0				A	39965024	G	A	39965024	2	1	96	1	0	0	0	0	0	0	0	1	15454	1132	40	1		1	SUPT5H	19	39965024	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	736806	39965024	19163959	459	7093											
PLA2G4C	8605	broad.mit.edu	37	chr19	48607859	48607859	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gcttaccaagtggatccagaGacccctgcgaggtacgtgac	12	12	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PLA2G4C	NM_001159322	exon4	c.C273A	p.V91V	TCCAGAGACCCCT		131	5	0.04	121	1	0.0082644628		76		1	0	0				T	48607859	G	T	48607859	2	4	96	1	0	0	0	0	0	0	0	1	12050	929	33	3		3	PLA2G4C	19	48607859	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	8642835	48607859	10521124	460	7094											
NTF4	4909	broad.mit.edu	37	chr19	49564741	49564741	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgcacataggactgcttggCcttgcactcagatacccagt	9	14	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NTF4	NM_006179	exon2	c.G514A	p.A172T	GCTTGGCCTTGCA		238	7	0.03	228	0	0		10		1	0	0				T	49564741	C	T	49564741	3	4	96	1	0	0	0	0	1	0	0	0	10744	739	26	2	122	2	NTF4	19	49564741	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	956882	49564741	9564242	461	7095											
TSKS	60385	broad.mit.edu	37	chr19	50251405	50251405	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgccttctctccagattctcGctcagcacagaacactcgct	6	17	3	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TSKS	NM_021733	exon4	c.C516T	p.S172S	ATTCTCGCTCAGC		162	4	0.02	162	0	0		97		1	0	0				A	50251405	G	A	50251405	2	1	96	1	0	0	0	0	0	0	0	1	16686	1078	38	1		1	TSKS	19	50251405	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	686664	50251405	8877578	462	7096											
ZNF813	126017	broad.mit.edu	37	chr19	53995075	53995076	+	Frame_Shift_Ins	INS	-	-	G													aagtgtaatgaatgtggcaaINSggtttttaatcgaaaaacac					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZNF813	NM_001004301	exon4	c.1589_1590insG	p.K530fs	GTGGCAAGGTTTT		221	4	0.02	219	0	0		81		4	0	0				G	53995076	-	G	53995075	7	5	96	1	0	1	1	0	0	0	0	0	18222	72	3	0	1599	0	ZNF813	19	53995075	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	3743670	53995075	5133908	463	7097											
TRMT6	51605	broad.mit.edu	37	chr20	5924639	5924639	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatacataattgaaagaataCgggtggatggcttcacaaca	9	6	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TRMT6	NM_015939	exon5	c.G497A	p.R166H	AGAATACGGGTGG		288	5	0.02	245	3	0.012244898		28		30	0	0				T	5924639	C	T	5924639	3	4	96	1	0	0	0	0	1	0	0	0	16628	536	19	1	1024	1	TRMT6	20	5924639	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10		5924639	57100881	464	7098											
KIF3B	9371	broad.mit.edu	37	chr20	30898575	30898575	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agagactctgaccactctgcGatatgccaaccgtgccaaaa	8	13	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KIF3B	NM_004798	exon2	c.G995T	p.R332L	CTCTGCGATATGC		163	3	0.02	186	1	0.0053763441		75		4	0	0				T	30898575	G	T	30898575	3	4	96	1	0	0	0	0	1	0	0	0	8342	1058	37	1	997	1	KIF3B	20	30898575	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	24973936	30898575	32126945	465	7099											
PTPRT	11122	broad.mit.edu	37	chr20	40827906	40827906	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cgttgacgtcctgagaactaGaagagaagccttcatcattg	10	9	2	4	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PTPRT	NM_133170	exon17	c.C2522A	p.S841Y	GAACTAGAAGAGA		208	3	0.01	226	1	0.0044247788		372		0	0					T	40827906	G	T	40827906	3	4	96	1	0	0	0	0	1	0	0	0	12863	942	33	3	1924	3	PTPRT	20	40827906	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	9929331	40827906	22197614	466	7100											
DBNDD2	55861	broad.mit.edu	37	chr20	44037587	44037587	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagtcgtctggtatgcccCtctgctttggggacttcagt	11	13	3	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DBNDD2	NM_001048226	exon2	c.C592A	p.L198I	ATGCCCCTCTGCT		104	4	0.04	106	0	0		30		2	0	0				A	44037587	C	A	44037587	3	1	96	1	0	0	0	0	1	0	0	0	4278	681	24	3	292	3	DBNDD2	20	44037587	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	3209681	44037587	18987933	467	7101											
PLTP	5360	broad.mit.edu	37	chr20	44539808	44539808	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tactcagagatgttgtagtaGaagtggccttctttgccccg	11	9	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PLTP	NM_182676	exon3	c.C183A	p.F61L	GTAGTAGAAGTGG		185	4	0.02	161	1	0.0062111801		49		101	0	0				T	44539808	G	T	44539808	3	4	96	1	0	0	0	0	1	0	0	0	12161	933	33	3	1354	3	PLTP	20	44539808	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	502221	44539808	18485712	468	7102											
PCIF1	63935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	44574893	44574893	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgcagggatcgctgcctGtgcatgtctttgaggccctc	13	13	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_022104	exon14	c.G1483T	p.V495L	CTGCCTGTGCATG		95	17	0.18	63	0	0				100	28	0.28				T	44574893	G	T	44574893	3	4	96	1	0	0	0	0	1	0	0	0	11626	1377	48	3	1529	3	PCIF1	20	44574893	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	35085	44574893	18450627	469	7103											
MC3R	4159	broad.mit.edu	37	chr20	54824540	54824540	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtgcacatgttcctctttgCgcggctgcacgtcaagcgca	11	14	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MC3R	NM_019888	exon1	c.C641T	p.A214V	TCTTTGCGCGGCT		186	4	0.02	149	0	0		83		0	0					T	54824540	C	T	54824540	3	4	96	1	0	0	0	0	1	0	0	0	9414	768	27	1	643	1	MC3R	20	54824540	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	10249647	54824540	8200980	470	7104											
BTG3	10950	broad.mit.edu	37	chr21	18966553	18966553	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccaaatggaacaggaggaGgatagtgattctgatggcca	13	6	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	BTG3	NM_001130914	exon6	c.C749A	p.P250H	GGAGGAGGATAGT		305	4	0.01	204	0	0		27		320	0	0				T	18966553	G	T	18966553	3	4	96	1	0	0	0	0	1	0	0	0	1558	1000	35	3	145	3	BTG3	21	18966553	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10		18966553	29163342	471	7105											
BACH1	571	broad.mit.edu	37	chr21	30693795	30693795	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccactcaagaatcgtagGccaggctgatggagagctga	12	10	1	4	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	BACH1	NM_206866	exon2	c.G194T	p.G65V	TCGTAGGCCAGGC		316	4	0.01	152	0	0		66		1	0	0				T	30693795	G	T	30693795	3	4	96	1	0	0	0	0	1	0	0	0	1281	1203	42	2	196	2	BACH1	21	30693795	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	11727242	30693795	17436100	472	7106											
GRIK1	2897	broad.mit.edu	37	chr21	31045454	31045454	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taatattatatctggagggaGctttgatgagctcttgtaga	11	4	2	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	GRIK1	NM_175611	exon4	c.C575A	p.A192D	GAGGGAGCTTTGA		282	5	0.02	158	0	0		293		0	0					T	31045454	G	T	31045454	3	4	96	1	0	0	0	0	1	0	0	0	6813	971	34	2	2397	2	GRIK1	21	31045454	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	351659	31045454	17084441	473	7107											
TIAM1	7074	broad.mit.edu	37	chr21	32624145	32624145	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcaccaggaagttcttgaCggccagggcgccggccttgc	15	13	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	TIAM1_ENST00000286827,rectum,carcinoma,0,2	TIAM1	NM_003253	exon6	c.G1324A	p.V442I	TCTTGACGGCCAG		300	3	0.01	157	0	0		522	2	3	0	0				T	32624145	C	T	32624145	3	4	96	1	0	0	0	0	1	0	0	0	15949	536	19	1	3547	1	TIAM1	21	32624145	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	1578691	32624145	15505750	474	7108											
BRWD1	54014	broad.mit.edu	37	chr21	40581968	40581968	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgcattgctaaatatcaGccggatgtctttgcaaaact	7	8	2	0	rs147607337	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	BRWD1	NM_018963	exon36	c.C4150A	p.L1384M	ATATCAGCCGGAT		247	4	0.02	122	0	0		325		10	0	0				T	40581968	G	T	40581968	3	4	96	1	0	0	0	0	1	0	0	0	1527	962	34	2	3079	2	BRWD1	21	40581968	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	7957823	40581968	7547927	475	7109											
DSCAM	1826	broad.mit.edu	37	chr21	41648167	41648167	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggattcggccatttaggGcaattggctggaactgggga	15	7	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DSCAM	NM_001271534	exon11	c.C2213A	p.A738D	TTTAGGGCAATTG		261	4	0.02	167	0	0		347		2	0	0				T	41648167	G	T	41648167	3	4	96	1	0	0	0	0	1	0	0	0	4794	1203	42	2	3917	2	DSCAM	21	41648167	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1066199	41648167	6481728	476	7110											
UMODL1	89766	broad.mit.edu	37	chr21	43547248	43547248	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgtcaggatcgaagtgggGctctacaggcagaaaagcaa	14	7	2	1	rs373998313	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	UMODL1	NM_173568	exon18	c.G3810T	p.G1270G	AGTGGGGCTCTAC		225	3	0.01	132	0	0		186		83	0	0				T	43547248	G	T	43547248	2	4	96	1	0	0	0	0	0	0	0	1	17039	1190	42	2		2	UMODL1	21	43547248	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1899081	43547248	4582647	477	7111											
RRP1	8568	broad.mit.edu	37	chr21	45217893	45217893	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactggacacacaggatgaGgaggtggcgtcggacagtga	17	7	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RRP1	NM_003683	exon8	c.G723T	p.E241D	GGATGAGGAGGTG		227	3	0.01	152	0	0		23		553	0	0				T	45217893	G	T	45217893	3	4	96	1	0	0	0	0	1	0	0	0	13736	991	35	3	753	3	RRP1	21	45217893	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1670645	45217893	2912002	478	7112											
DNMT3L	29947	broad.mit.edu	37	chr21	45679568	45679568	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agggtgctgtgtgtgaacctGgagacttccgcagcagatgc	15	9	0	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DNMT3L	NM_013369	exon4	c.C178T	p.Q60X	GAACCTGGAGACT		299	6	0.02	195	0	0		33		1380	1	0				A	45679568	G	A	45679568	4	1	96	1	0	0	0	0	0	1	0	0	4705	1357	47	3	1021	3	DNMT3L	21	45679568	Nonsense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	461675	45679568	2450327	479	7113											
IL17RA	23765	mdanderson.org	37	chr22	17589847	17589847	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttccgggactggcaggtcCgctgtcccgactggttcgaa	15	12	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_014339	exon13	c.C1738T	p.R580C	CAGGTCCGCTGTC		19	2	0.11	24	0	0				15	0	0				T	17589847	C	T	17589847	3	4	96	1	0	0	0	0	1	0	0	0	7682	652	23	1	1788	1	IL17RA	22	17589847	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10		17589847	33714719	480	7114											
PRODH	5625	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	18900987	18900987	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggtcacacatgcctagcaGctgtccaaagtacacccggt	9	14	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PRODH	NM_016335	exon14	c.C1579G	p.L527V	CTAGCAGCTGTCC		190	90	0.47	230	2	0.0086956522		42		434	210	0.48				C	18900987	G	C	18900987	3	2	96	1	0	0	0	0	1	0	0	0	12599	962	34	5	231	5	PRODH	22	18900987	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1311140	18900987	32403579	481	7115											
CLTCL1	8218	broad.mit.edu	37	chr22	19263276	19263276	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tgctcaccaactttctctcgGatacatatgaacttgtcaga	6	11	3	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CLTCL1	NM_001835	exon2	c.C120A	p.I40I	CTCTCGGATACAT		143	4	0.03	141	0	0		115		0	0					T	19263276	G	T	19263276	2	4	96	1	0	0	0	0	0	0	0	1	3590	1164	41	3		3	CLTCL1	22	19263276	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	362289	19263276	32041290	482	7116											
SCARF2	91179	mdanderson.org	37	chr22	20780271	20780271	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgccgtggatccaggacacCttaggcttggtggcggggtc	16	10	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	SCARF2,middle_lobe,carcinoma,-1,1	SCARF2	NM_153334	exon11	c.G2007T	p.K669N	GGACACCTTAGGC		16	3	0.19	31	0	0		-1	1	8	0	0				A	20780271	C	A	20780271	3	1	96	1	0	0	0	0	1	0	0	0	13936	680	24	3	609	3	SCARF2	22	20780271	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	1516995	20780271	30524295	483	7117											
CABIN1	23523	broad.mit.edu	37	chr22	24480695	24480695	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagagaggccagcccttaGcctggacaaagtctctgcct	10	14	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CABIN1	NM_001199281	exon21	c.G3074T	p.S1025I	CCCTTAGCCTGGA		154	4	0.03	167	1	0.005988024		153		22	0	0				T	24480695	G	T	24480695	3	4	96	1	0	0	0	0	1	0	0	0	2546	971	34	2	3152	2	CABIN1	22	24480695	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3700424	24480695	26823871	484	7118											
ZNRF3	84133	mdanderson.org	37	chr22	29446834	29446834	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaggctagggccctactgCggcctggctgccctccggag	15	16	0	0	rs375016509		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001206998	exon8	c.C2665T	p.R889W	CTACTGCGGCCTG		26	2	0.08	23	0	0				62	0	0				T	29446834	C	T	29446834	3	4	96	1	0	0	0	0	1	0	0	0	18254	759	27	1	2391	1	ZNRF3	22	29446834	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	4966139	29446834	21857732	485	7119											
SLC5A4	6527	broad.mit.edu	37	chr22	32620367	32620367	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cactccacagataatcttggGacagttactgggagccaagc	10	11	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLC5A4	NM_014227	exon13	c.C1552A	p.P518T	TCTTGGGACAGTT		175	4	0.02	174	0	0		82		0	0					T	32620367	G	T	32620367	3	4	96	1	0	0	0	0	1	0	0	0	14721	1174	41	3	439	3	SLC5A4	22	32620367	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3173533	32620367	18684199	486	7120											
LGALS2	3957	broad.mit.edu	37	chr22	37966694	37966694	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gattcgctgaagcgagggttGaaatgcaggttcagcttgtc	14	7	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	LGALS2	NM_006498	exon3	c.C138A	p.F46L	AGGGTTGAAATGC		169	5	0.03	150	1	0.0066666667		16		24	0	0				T	37966694	G	T	37966694	3	4	96	1	0	0	0	0	1	0	0	0	8780	1281	45	3	268	3	LGALS2	22	37966694	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	5346327	37966694	13337872	487	7121											
NOL12	79159	broad.mit.edu	37	chr22	38087248	38087248	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaagaggaaacatccccgaCgggcccaggactccaaaaag	10	13	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	NOL12,NS,carcinoma,-1,2	NOL12	NM_024313	exon6	c.C547T	p.R183W	CCCCGACGGGCCC		320	4	0.01	324	0	0		22	2	142	0	0				T	38087248	C	T	38087248	3	4	96	1	0	0	0	0	1	0	0	0	10568	527	19	1	569	1	NOL12	22	38087248	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	120554	38087248	13217318	488	7122											
TAB1	10454	mdanderson.org	37	chr22	39826224	39826224	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagcgtggtgacagcaccGtagggcagccggagaatgca	16	10	0	3	rs375542675		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_006116	exon11	c.G1512A	p.P504P	AGCACCGTAGGGC		31	3	0.1	33	0	0				28	0	0				A	39826224	G	A	39826224	2	1	96	1	0	0	0	0	0	0	0	1	15551	1132	40	1		1	TAB1	22	39826224	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1738976	39826224	11478342	489	7123											
SREBF2	6721	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr22	42289198	42289198	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gactccctgcgctggctctgCcaccccctgggccagaagtt	11	17	1	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_004599	exon12	c.C2286T	p.C762C	GCTCTGCCACCCC		94	5	0.05	72	0	0				95	0	0				T	42289198	C	T	42289198	2	4	96	1	0	0	0	0	0	0	0	1	15197	747	26	2		2	SREBF2	22	42289198	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	2462974	42289198	9015368	490	7124											
CYP2D6	1565	broad.mit.edu	37	chr22	42522918	42522918	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcatccaggaagtgttcgGggtggaagcggaagggcttc	19	7	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CYP2D6	NM_000106	exon8	c.C1250A	p.P417H	TGTTCGGGGTGGA		372	5	0.01	346	0	0		104		4	0	0				T	42522918	G	T	42522918	3	4	96	1	0	0	0	0	1	0	0	0	4192	1232	43	3	251	3	CYP2D6	22	42522918	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	233720	42522918	8781648	491	7125											
FRMPD4	9758	broad.mit.edu	37	chrX	12736057	12736057	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggccgatggtgaggggaagGcaccccctaatgggaacaca	15	10	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FRMPD4	NM_014728	exon16	c.G3112A	p.A1038T	GGGAAGGCACCCC		259	7	0.03	131	2	0.0152671756		214		2	0	0				A	12736057	G	A	12736057	3	1	96	1	0	0	0	0	1	0	0	0	6093	1203	42	2	3174	2	FRMPD4	23	12736057	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10		12736057	142534503	492	7126											
GEMIN8	54960	broad.mit.edu	37	chrX	14027165	14027165	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtacaaacgcttcatctcgGcctggcgccgctcaccaggc	10	17	3	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	GEMIN8	NM_017856	exon5	c.C596A	p.A199D	ATCTCGGCCTGGC		323	3	0.01	163	0	0		19		125	0	0				T	14027165	G	T	14027165	3	4	96	1	0	0	0	0	1	0	0	0	6375	1203	42	2	136	2	GEMIN8	23	14027165	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1291108	14027165	141243395	493	7127											
REPS2	9185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	17047745	17047745	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatcaggcttcccttatccGggtaagtgatgatgcagggt	13	9	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_004726	exon5	c.G770A	p.R257Q	TTATCCGGGTAAG		174	18	0.1	98	0	0				5	0	0				A	17047745	G	A	17047745	3	1	96	1	0	0	0	0	1	0	0	0	13280	1130	39	1	788	1	REPS2	23	17047745	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	3020580	17047745	138222815	494	7128											
NHS	4810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	17750309	17750309	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cagagtcccctcagagcaccGatgatgcccatcaggggtca	11	14	3	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_198270	exon8	c.G4618A	p.D1540N	AGCACCGATGATG		420	169	0.4	248	0	0				11	2	0.18				A	17750309	G	A	17750309	3	1	96	1	0	0	0	0	1	0	0	0	10457	1058	37	1	4753	1	NHS	23	17750309	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	702564	17750309	137520251	495	7129											
KLHL15	80311	broad.mit.edu	37	chrX	24024352	24024352	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tctagcagaaaggtgtctaaCttctccctgactccctcgat	7	13	3	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KLHL15	NM_030624	exon3	c.G459T	p.K153N	GTCTAACTTCTCC		193	4	0.02	85	1	0.0117647059		50		4	0	0				A	24024352	C	A	24024352	3	1	96	1	0	0	0	0	1	0	0	0	8413	564	20	3	1363	3	KLHL15	23	24024352	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	6274043	24024352	131246208	496	7130											
ARX	170302	broad.mit.edu	37	chrX	25033725	25033725	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caagctctgcgcggctcccaGcaaccgcattttgcacgggc	11	16	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ARX	NM_139058	exon1	c.C130A	p.L44M	CTCCCAGCAACCG		204	4	0.02	103	0	0		19		1	0	0				T	25033725	G	T	25033725	3	4	96	1	0	0	0	0	1	0	0	0	1003	962	34	2	1578	2	ARX	23	25033725	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1009373	25033725	130236835	497	7131											
MAGEB3	4114	broad.mit.edu	37	chrX	30254694	30254694	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcatgaagggcaactgtgCcactgaggagaagatctggg	14	8	2	4	rs145982241	bycluster;byfrequency	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MAGEB3	NM_002365	exon5	c.C653T	p.A218V	ACTGTGCCACTGA		182	5	0.03	104	0	0		54		0	0					T	30254694	C	T	30254694	3	4	96	1	0	0	0	0	1	0	0	0	9226	739	26	2	655	2	MAGEB3	23	30254694	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	5220969	30254694	125015866	498	7132											
DMD	1756	broad.mit.edu	37	chrX	31196891	31196891	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgttttttagtaccttgGcaaagtctcgaacatcttct	6	8	3	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DMD	NM_004006	exon70	c.C10118A	p.A3373D	ACCTTGGCAAAGT		165	4	0.02	105	0	0		2127		10	0	0				T	31196891	G	T	31196891	3	4	96	1	0	0	0	0	1	0	0	0	4608	1203	42	2	1069	2	DMD	23	31196891	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	942197	31196891	124073669	499	7133											
FAM47C	442444	broad.mit.edu	37	chrX	37028069	37028069	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgcccagagcctcccaagaTtctggtgtccagtctccacc	8	18	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FAM47C	NM_001013736	exon1	c.T1586C	p.I529T	CCAAGATTCTGGT		114	6	0.05	63	1	0.0158730159		267		0	0					C	37028069	T	C	37028069	3	2	96	1	0	0	0	0	1	0	0	0	5606	1493	52	4	1588	4	FAM47C	23	37028069	Missense_Mutation	SNP	T	TCGA-VF-A8A8-01A-11D-A435-10	5831178	37028069	118242491	500	7134											
ZNF41	7592	broad.mit.edu	37	chrX	47315340	47315340	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaacagctctgatgtgggGcttccccctccagcatccat	9	15	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZNF41	NM_007130	exon4	c.C275T	p.A92V	TGTGGGGCTTCCC		233	4	0.02	115	1	0.0086956522		71		1	0	0				A	47315340	G	A	47315340	3	1	96	1	0	0	0	0	1	0	0	0	17945	1203	42	2	2072	2	ZNF41	23	47315340	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	10287271	47315340	107955220	501	7135											
KDM5C	8242	broad.mit.edu	37	chrX	53227713	53227713	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcccagagctcgggacacGcaagcctctgcctcactcag	10	16	3	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KDM5C	NM_004187	exon17	c.C2475T	p.C825C	GGACACGCAAGCC		356	6	0.02	158	0	0		385		81	0	0				A	53227713	G	A	53227713	2	1	96	1	0	0	0	0	0	0	0	1	8177	1079	38	1		1	KDM5C	23	53227713	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	5912373	53227713	102042847	502	7136											
HUWE1	10075	broad.mit.edu	37	chrX	53572039	53572039	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctgtggctgctcctcagGcaggccatcaggagagaggg	17	10	3	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	HUWE1	NM_031407	exon71	c.C10999A	p.P3667T	CCTCAGGCAGGCC		175	3	0.02	88	0	0		724		158	0	0				T	53572039	G	T	53572039	3	4	96	1	0	0	0	0	1	0	0	0	7504	1203	42	2	2181	2	HUWE1	23	53572039	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	344326	53572039	101698521	503	7137											
WNK3	65267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	54285766	54285766	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagctccaactggttgggaTacaggctgtaaacagtacag	11	9	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001002838	exon11	c.A2043G	p.V681V	TTGGGATACAGGC		115	36	0.31	61	0	0				1	0	0				C	54285766	T	C	54285766	2	2	96	1	0	0	0	0	0	0	0	1	17438	1393	49	4		4	WNK3	23	54285766	Silent	SNP	T	TCGA-VF-A8A8-01A-11D-A435-10	713727	54285766	100984794	504	7138											
GNL3L	54552	broad.mit.edu	37	chrX	54584983	54584983	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tggtggatgtctgctcagtgGaccgccgctcagtgctgcag	15	11	3	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	GNL3L	NM_001184819	exon15	c.G1561T	p.D521Y	TCAGTGGACCGCC		162	4	0.02	90	2	0.0222222222		73		27	0	0				T	54584983	G	T	54584983	3	4	96	1	0	0	0	0	1	0	0	0	6579	1174	41	3	1615	3	GNL3L	23	54584983	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	299217	54584983	100685577	505	7139											
SPIN4	139886	broad.mit.edu	37	chrX	62570276	62570276	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	atcacaggagctcgcgccagGaccatacccttccattcatc	7	16	2	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SPIN4	NM_001012968	exon1	c.C423A	p.V141V	CGCCAGGACCATA		249	4	0.02	153	0	0		29		5	0	0				T	62570276	G	T	62570276	2	4	96	1	0	0	0	0	0	0	0	1	15111	1161	41	3		3	SPIN4	23	62570276	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	7985293	62570276	92700284	506	7140											
PJA1	64219	broad.mit.edu	37	chrX	68382256	68382257	+	Frame_Shift_Ins	INS	-	-	A													tcgtcatcatcatcagtatcINSaaaaaaaatttttggtttca					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PJA1	NM_145119	exon2	c.826_827insT	p.D276_T277delinsX	CAGTATCAAAAAA		181	7	0.04	94	0	0		106		73	0	0				A	68382257	-	A	68382256	7	5	96	1	0	1	1	0	0	0	0	0	12008	826	29	0	1109	0	PJA1	23	68382256	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	5811980	68382256	86888304	507	7141											
P2RY4	5030	broad.mit.edu	37	chrX	69478692	69478692	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	taaatggtgcgggtgatgtgGaaaggcacgaagcagacagc	16	6	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	P2RY4	NM_002565	exon1	c.C783A	p.F261L	GATGTGGAAAGGC		186	3	0.02	81	0	0		39		0	0					T	69478692	G	T	69478692	3	4	96	1	0	0	0	0	1	0	0	0	11399	1165	41	3	318	3	P2RY4	23	69478692	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1096436	69478692	85791868	508	7142											
SLC7A3	84889	broad.mit.edu	37	chrX	70146767	70146767	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gacaatttggccagagagtgGagtggggatggagttgagtg	19	3	0	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLC7A3	NM_032803	exon9	c.C1411A	p.P471T	AGAGTGGAGTGGG		261	5	0.02	121	0	0		76		454	0	0				T	70146767	G	T	70146767	3	4	96	1	0	0	0	0	1	0	0	0	14752	1174	41	3	464	3	SLC7A3	23	70146767	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	668075	70146767	85123793	509	7143											
ZMYM3	9203	broad.mit.edu	37	chrX	70470506	70470506	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcgaggagagcgccggggCcggaatggcacaaagtcctc	16	11	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZMYM3	NM_005096	exon5	c.G849A	p.R283R	CCGGGGCCGGAAT		237	3	0.01	131	0	0		137		22	0	0				T	70470506	C	T	70470506	2	4	96	1	0	0	0	0	0	0	0	1	17758	726	26	2		2	ZMYM3	23	70470506	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	323739	70470506	84800054	510	7144											
RPS6KA6	27330	broad.mit.edu	37	chrX	83360833	83360833	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgggatgttgtccatagcGcatcaatatttcaatctctt	8	8	3	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RPS6KA6	NM_014496	exon16	c.C1417T	p.R473C	CATAGCGCATCAA		530	5	0.01	327	0	0		116		0	0					A	83360833	G	A	83360833	3	1	96	1	0	0	0	0	1	0	0	0	13706	1087	38	1	848	1	RPS6KA6	23	83360833	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	12890327	83360833	71909727	511	7145											
SATL1	340562	broad.mit.edu	37	chrX	84362715	84362715	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgggactggttggctcagGcctgtttgccatgtgcctgg	15	11	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SATL1	NM_001012980	exon1	c.C1260A	p.G420G	GCTCAGGCCTGTT		284	4	0.01	154	0	0		70		0	0					T	84362715	G	T	84362715	2	4	96	1	0	0	0	0	0	0	0	1	13907	1190	42	2		2	SATL1	23	84362715	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1001882	84362715	70907845	512	7146											
SATL1	340562	broad.mit.edu	37	chrX	84363309	84363309	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cttatgcctggttggctgggGacttgctggctcatgcctgg	15	10	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SATL1	NM_001012980	exon1	c.C666A	p.V222V	GCTGGGGACTTGC		174	3	0.02	113	0	0		70		0	0					T	84363309	G	T	84363309	2	4	96	1	0	0	0	0	0	0	0	1	13907	1161	41	3		3	SATL1	23	84363309	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	594	84363309	70907251	513	7147											
NXF5	55998	broad.mit.edu	37	chrX	101096670	101096671	+	Frame_Shift_Ins	INS	-	-	T													ggttctcatcatcataaatcINSttataactgacatccttcaa					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NXF5	NM_032946	exon5	c.216_217insA	p.K72fs	ATAAATCTTATAA		659	5	0.01	337	0	0		65		0	0					T	101096671	-	T	101096670	7	5	96	1	0	1	1	0	0	0	0	0	10833	912	32	0	929	0	NXF5	23	101096670	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	16733361	101096670	54173890	514	7148											
NXT2	55916	broad.mit.edu	37	chrX	108784834	108784834	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtcaatatgttagattGccaaccagttcatggtaaga	9	8	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NXT2	NM_018698	exon4	c.G398A	p.C133Y	TAGATTGCCAACC		265	4	0.02	127	0	0		16		15	0	0				A	108784834	G	A	108784834	3	1	96	1	0	0	0	0	1	0	0	0	10842	1319	46	2	412	2	NXT2	23	108784834	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	7688164	108784834	46485726	515	7149											
ALG13	79868	broad.mit.edu	37	chrX	110970932	110970933	+	Frame_Shift_Ins	INS	-	-	T													atggacagatgcccaggggcINSttggaagaaactattacttt					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ALG13	NM_001099922	exon18	c.2181_2182insT	p.G727fs	CAGGGGCTTGGAA		369	7	0.02	217	0	0		230		9	0	0				T	110970933	-	T	110970932	7	5	96	1	0	1	1	0	0	0	0	0	512	784	28	0	2393	0	ALG13	23	110970932	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	2186098	110970932	44299628	516	7150											
DCAF12L1	139170	broad.mit.edu	37	chrX	125686305	125686305	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acgcgaacaccttgttgaccGtgcccagctccagttggcgc	11	15	0	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DCAF12L1	NM_178470	exon1	c.C287T	p.T96M	TTGACCGTGCCCA		292	3	0.01	153	0	0		135		1	0	0				A	125686305	G	A	125686305	3	1	96	1	0	0	0	0	1	0	0	0	4288	1145	40	1	1108	1	DCAF12L1	23	125686305	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	14715373	125686305	29584255	517	7151											
GPR112	139378	broad.mit.edu	37	chrX	135405334	135405334	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cacaacctgacacctcatggGactctgttcctagggcactt	8	14	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	GPR112	NM_153834	exon5	c.G468T	p.G156G	TCATGGGACTCTG		222	4	0.02	128	0	0		459		0	0					T	135405334	G	T	135405334	2	4	96	1	0	0	0	0	0	0	0	1	6668	1161	41	3		3	GPR112	23	135405334	Silent	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	9719029	135405334	19865226	518	7152											
SLITRK4	139065	broad.mit.edu	37	chrX	142717464	142717464	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagatgtaaacaggcagGctctttaggagattattgtt	11	4	1	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLITRK4	NM_001184750	exon2	c.C1461A	p.S487R	AGGCAGGCTCTTT		258	3	0.01	109	0	0		162		5	0	0				T	142717464	G	T	142717464	3	4	96	1	0	0	0	0	1	0	0	0	14798	1194	42	2	1056	2	SLITRK4	23	142717464	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	7312130	142717464	12553096	519	7153											
MAGEA11	4110	broad.mit.edu	37	chrX	148797652	148797653	+	Frame_Shift_Ins	INS	-	-	A													ttgcctgctgctgagtcaccINSaagtcctccccagagtcctc					novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MAGEA11	NM_005366	exon5	c.506_507insA	p.P169fs	AGTCACCAAGTCC		376	7	0.02	194	0	0		86		2	0	0				A	148797653	-	A	148797652	7	5	96	1	0	1	1	0	0	0	0	0	9210	594	21	0	533	0	MAGEA11	23	148797652	Frame_Shift_Ins	INS	-	TCGA-VF-A8A8-01A-11D-A435-10	6080188	148797652	6472908	520	7154											
CNGA2	1260	broad.mit.edu	37	chrX	150908187	150908187	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaaaggcgacaaggatggCgaggacaaaggcaccaagta	15	8	0	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CNGA2	NM_005140	exon4	c.C357T	p.G119G	GGATGGCGAGGAC		148	4	0.03	90	0	0		136		0	0					T	150908187	C	T	150908187	2	4	96	1	0	0	0	0	0	0	0	1	3620	755	27	1		1	CNGA2	23	150908187	Silent	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	2110535	150908187	4362373	521	7155											
PNMA5	114824	broad.mit.edu	37	chrX	152159584	152159584	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagacacttgccatatggGcattatctcagtgacctgct	8	12	2	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PNMA5	NM_001103150	exon2	c.C559A	p.P187T	ATATGGGCATTAT		148	3	0.02	91	0	0		63		0	0					T	152159584	G	T	152159584	3	4	96	1	0	0	0	0	1	0	0	0	12203	1203	42	2	791	2	PNMA5	23	152159584	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	1251397	152159584	3110976	522	7156											
DUSP9	1852	broad.mit.edu	37	chrX	152914704	152914704	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	caggaggcttcagcagattcCaggccgagtgccctcacctg	12	14	2	1	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DUSP9	NM_001395	exon3	c.C391A	p.Q131K	AGATTCCAGGCCG		64	4	0.06	27	0	0		41		14	0	0				A	152914704	C	A	152914704	3	1	96	1	0	0	0	0	1	0	0	0	4858	595	21	3	397	3	DUSP9	23	152914704	Missense_Mutation	SNP	C	TCGA-VF-A8A8-01A-11D-A435-10	755120	152914704	2355856	523	7157											
G6PD	2539	broad.mit.edu	37	chrX	153760882	153760882	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgtacacggcctcgttgGgctgcacgcggatcaccagc	14	13	1	0	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	G6PD	NM_000402	exon10	c.C1277A	p.P426H	TCGTTGGGCTGCA		230	6	0.03	96	0	0		73		209	2	0.01				T	153760882	G	T	153760882	3	4	96	1	0	0	0	0	1	0	0	0	6180	1232	43	3	376	3	G6PD	23	153760882	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	846178	153760882	1509678	524	7158											
USP9Y	8287	broad.mit.edu	37	chrY	14902338	14902338	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaatgattcacttttttcAgattaaccaagttactcatg	4	7	3	2	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	USP9Y	NM_004654	exon25	c.3562-2A>G	.	TTTTTCAGATTAA		202	4	0.02	236	0	0		49		0	0					G	14902338	A	G	14902338	5	3	96	1	0	0	0	0	0	0	1	0	17150	202	7	4	3650	4	USP9Y	24	14902338	Splice_Site	SNP	A	TCGA-VF-A8A8-01A-11D-A435-10		14902338	44471228	525	7159											
DDX3Y	8653	broad.mit.edu	37	chrY	15026886	15026886	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtacagatctatgaggaaGccagaaaagtaaaatattca	8	6	2	3	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DDX3Y	NM_004660	exon9	c.G850T	p.A284S	GAGGAAGCCAGAA		100	3	0.03	153	0	0		13		16	0	0				T	15026886	G	T	15026886	3	4	96	1	0	0	0	0	1	0	0	0	4382	971	34	2	884	2	DDX3Y	24	15026886	Missense_Mutation	SNP	G	TCGA-VF-A8A8-01A-11D-A435-10	124548	15026886	44346680	526	7160											
PIK3CD	5293	hgsc.bcm.edu;bcgsc.ca	37	chr1	9779982	9779982	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccctgtccttctgcaggacTgccccattgcctgggccaac	10	17	1	0	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_005026	exon10	c.T1246C	p.C416R	CAGGACTGCCCCA		118	11	0.09	140	0	0				35	12	0.34				C	9779982	T	C	9779982	3	2	97	1	0	0	0	0	1	0	0	0	11962	1580	55	4	1276	4	PIK3CD	1	9779982	Missense_Mutation	SNP	T	TCGA-VF-A8AA-01A-11D-A435-10		9779982	239470639	1	7161											
PRAMEF19	391003	bcgsc.ca;mdanderson.org	37	chr1	13474974	13474974	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccatggacgtgtcattgccGtgaaagcagaaagtggtgag	14	7	1	3	rs4462137	bycluster	TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	PRAMEF19	NM_001099790	exon3	c.C1155T	p.H385H	ATTGCCGTGAAAG		670	24	0.04	700	0	0		6		0	0					A	13474974	G	A	13474974	2	1	97	1	0	0	0	0	0	0	0	1	12482	1136	40	1		1	PRAMEF19	1	13474974	Silent	SNP	G	TCGA-VF-A8AA-01A-11D-A435-10	3694992	13474974	235775647	2	7162											
FAM46B	115572	bcgsc.ca	37	chr1	27332465	27332466	+	Missense_Mutation	DNP	GT	GT	AC													ggcagccaggtgggataggcGtgagccaggagaggttgcac					novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	GT	GT					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	FAM46B	NM_052943	exon2	c.A1247G	p.H416R	ATAGGCGTGAGCC		218	9	0.04	226	0	0		44		582	0	0				AC	27332466	GT	AC	27332465	3	1	97	1	0	0	0	0	1	0	0	0	5601	1136	40	1	33	1	FAM46B	1	27332465	Missense_Mutation	DNP	GT	TCGA-VF-A8AA-01A-11D-A435-10	13857491	27332465	221918156	3	7163											
BTBD19	149478	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	45275921	45275921	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttggtcaagaacggcaggaGgtatttgcccatcggtgctt	14	8	1	1	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_001136537	exon2	c.G123A	p.E41E	GCAGGAGGTATTT		62	6	0.1	57	0	0				0	0					A	45275921	G	A	45275921	2	1	97	1	0	0	0	0	0	0	0	1	1545	991	35	3		3	BTBD19	1	45275921	Silent	SNP	G	TCGA-VF-A8AA-01A-11D-A435-10	17943456	45275921	203974700	4	7164											
JAK1	3716	hgsc.bcm.edu	37	chr1	65330611	65330611	+	Frame_Shift_Del	DEL	T	T	-													ttcttgtgtttattttccagTtttttccgcttcagtttatt					novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.,1	JAK1	NM_002227	exon8	c.1036delC	p.L346fs	TTCCAGTTTTTTC		141	10	0.07	146	0	0		209		38	0	0				-	65330611	T	-	65330611	7	5	97	1	0	1	0	1	0	0	0	0	7980	1722	60	0	2501	0	JAK1	1	65330611	Frame_Shift_Del	DEL	T	TCGA-VF-A8AA-01A-11D-A435-10	20054690	65330611	183920010	5	7165											
MFF	56947	bcgsc.ca	37	chr2	228194480	228194481	+	Missense_Mutation	DNP	AG	AG	TT													aaatgagtaaaggaacaagcAgtgacacatcactaggaagg					novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	AG	AG					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	MFF	NM_020194	exon3	c.G20T	p.S7F	ACAAGCAGTGACA		216	7	0.03	228	0	0		48		6	0	0				TT	228194481	AG	TT	228194480	3	4	97	1	0	0	0	0	1	0	0	0	9568	188	7	5	21	5	MFF	2	228194480	Missense_Mutation	DNP	AG	TCGA-VF-A8AA-01A-11D-A435-10		228194480	15004893	6	7166											
RARB	5915	bcgsc.ca	37	chr3	25502825	25502825	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tggggtcagcgcctgtgaggGatgtaaggtgagtattcaca	16	6	2	2	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	RARB	NM_000965	exon2	c.G299A	p.G100E	GTGAGGGATGTAA		73	5	0.07	75	0	0		123		34	2	0.06				A	25502825	G	A	25502825	3	1	97	1	0	0	0	0	1	0	0	0	13104	1174	41	3	305	3	RARB	3	25502825	Missense_Mutation	SNP	G	TCGA-VF-A8AA-01A-11D-A435-10		25502825	172519605	7	7167											
WDR48	57599	hgsc.bcm.edu;bcgsc.ca	37	chr3	39130788	39130788	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaaacagtgccacaatgGgtaattgacatcactgtgga	10	7	1	2	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_020839	exon16	c.G1647T	p.W549C	ACAATGGGTAATT		109	5	0.05	105	0	0				56	0	0				T	39130788	G	T	39130788	3	4	97	1	0	0	0	0	1	0	0	0	17360	1241	43	3	1709	3	WDR48	3	39130788	Missense_Mutation	SNP	G	TCGA-VF-A8AA-01A-11D-A435-10	13627963	39130788	158891642	8	7168											
WDR19	57728	bcgsc.ca	37	chr4	39257506	39257506	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaagactatcaaagcattGccttatactttgaaggagaa	8	6	1	4	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	WDR19	NM_025132	exon27	c.G3040T	p.A1014S	AGCATTGCCTTAT		69	5	0.07	86	0	0		96		21	0	0				T	39257506	G	T	39257506	3	4	97	1	0	0	0	0	1	0	0	0	17338	1319	46	2	3146	2	WDR19	4	39257506	Missense_Mutation	SNP	G	TCGA-VF-A8AA-01A-11D-A435-10		39257506	151896770	9	7169											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	55593603	55593603	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aacccatgtatgaagtacagTggaaggttgttgaggagata	13	4	0	3	rs121913235	bycluster	TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	KIT,NS,germ_cell_tumour,0,64	KIT	NM_000222	exon11	c.T1669C	p.W557R	GTACAGTGGAAGG		95	11	0.12	87	0	0		0	64	97	8	0.08				C	55593603	T	C	55593603	3	2	97	1	0	0	0	0	1	0	0	0	8371	1696	59	4	1711	4	KIT	4	55593603	Missense_Mutation	SNP	T	TCGA-VF-A8AA-01A-11D-A435-10	16336097	55593603	135560673	10	7170											
UGT2B7	7364	bcgsc.ca	37	chr4	69964337	69964338	+	Missense_Mutation	DNP	AT	AT	TC													tcctggaattttcagtttccAtatccactcttaccaaatgt					novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	AT	AT					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	UGT2B7	NM_001074	exon2	c.T802C	p.Y268H	GTTTCCATATCCA		143	7	0.05	123	0	0		79		0	0					TC	69964338	AT	TC	69964337	3	4	97	1	0	0	0	0	1	0	0	0	17021	204	8	5	807	5	UGT2B7	4	69964337	Missense_Mutation	DNP	AT	TCGA-VF-A8AA-01A-11D-A435-10	14370734	69964337	121189939	11	7171											
OTUD4	54726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	146085375	146085375	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcccgataaattataaaatcTttcctgaaaataacaattag	3	7	1	1	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_017493	exon4	c.A150T	p.K50N	AAAATCTTTCCTG		136	16	0.12	174	0	0				16	3	0.19				A	146085375	T	A	146085375	3	1	97	1	0	0	0	0	1	0	0	0	11360	1606	56	5	3071	5	OTUD4	4	146085375	Missense_Mutation	SNP	T	TCGA-VF-A8AA-01A-11D-A435-10	76121038	146085375	45068901	12	7172											
CDKAL1	54901	bcgsc.ca	37	chr6	21065449	21065450	+	Missense_Mutation	DNP	CA	CA	TG													tgcaaaaatggaacaagttcCagcacaagtggtaagatctt					novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	CA	CA					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	CDKAL1,NS,carcinoma,0,1	CDKAL1	NM_017774	exon12	c.A1227G	p.P409L	AAGTTCCAGCACA		112	8	0.07	96	0	0		55	1	49	0	0				TG	21065450	CA	TG	21065449	3	4	97	1	0	0	0	0	1	0	0	0	3174	594	21	3	1264	3	CDKAL1	6	21065449	Missense_Mutation	DNP	CA	TCGA-VF-A8AA-01A-11D-A435-10		21065449	150049618	13	7173											
GFRAL	389400	hgsc.bcm.edu;bcgsc.ca	37	chr6	55216242	55216242	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acattgcccagatgttggctTtttgtgactgtgctcaatct	9	9	2	2	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_207410	exon5	c.T562C	p.F188L	TTGGCTTTTTGTG		149	8	0.05	131	0	0				1	0	0				C	55216242	T	C	55216242	3	2	97	1	0	0	0	0	1	0	0	0	6392	1841	64	4	580	4	GFRAL	6	55216242	Missense_Mutation	SNP	T	TCGA-VF-A8AA-01A-11D-A435-10	34150793	55216242	115898825	14	7174											
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	129785566	129785566	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaacattttcttcgagtgCtcttctgatgtatcttgcca	7	10	4	2	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_000426	exon50	c.C7124T	p.A2375V	CGAGTGCTCTTCT		148	19	0.13	114	0	0				9	3	0.33				T	129785566	C	T	129785566	3	4	97	1	0	0	0	0	1	0	0	0	8644	797	28	2	7322	2	LAMA2	6	129785566	Missense_Mutation	SNP	C	TCGA-VF-A8AA-01A-11D-A435-10	74569324	129785566	41329501	15	7175											
ANLN	54443	broad.mit.edu	37	chr7	36446171	36446171	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	taatgcctcaatttccagctCtgtggtaagtcagtatcatt	7	9	4	0	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	ANLN	NM_018685	exon4	c.C869T	p.S290F	CCAGCTCTGTGGT		28	4	0.14	18	0	0		101		29	6	0.21				T	36446171	C	T	36446171	3	4	97	1	0	0	0	0	1	0	0	0	688	913	32	3	883	3	ANLN	7	36446171	Missense_Mutation	SNP	C	TCGA-VF-A8AA-01A-11D-A435-10		36446171	122692492	16	7176											
ZNF680	340252	ucsc.edu	37	chr7	63981631	63981631	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctagtaaggtgtgaggaccGgttaaaagctttgccacatt	11	7	1	1	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	ZNF680,NS,carcinoma,+1,1	ZNF680	NM_178558	exon4	c.C1501T	p.R501W	AGGACCGGTTAAA		120	2	0.02	97	0	0		58	1	44	25	0.57	rescued with RNA-seq			A	63981631	G	A	63981631	3	1	97	1	0	0	0	0	1	0	0	0	18142	1115	39	1	95	1	ZNF680	7	63981631	Missense_Mutation	SNP	G	TCGA-VF-A8AA-01A-11D-A435-10	27535460	63981631	95157032	17	7177											
UBAC1	10422	ucsc.edu;bcgsc.ca	37	chr9	138830111	138830111	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcccagctgcaccaccggGttatccaggatggcctgaaa	12	13	0	1	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	UBAC1	NM_016172	exon9	c.C1059A	p.N353K	CACCGGGTTATCC		32	4	0.13	41	0	0		40		211	0	0				T	138830111	G	T	138830111	3	4	97	1	0	0	0	0	1	0	0	0	16894	1252	44	3	166	3	UBAC1	9	138830111	Missense_Mutation	SNP	G	TCGA-VF-A8AA-01A-11D-A435-10		138830111	2383320	18	7178											
C10orf105	414152	ucsc.edu	37	chr10	73497499	73497499	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtacctgtgattccagccGcagtggcctgtggccgtccg	15	13	0	1	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	C10orf105	.	.	.	.	CCAGCCGCAGTGG		45	4	0.09	48	0	0		11		0	0					A	73497499	G	A	73497499	3	1	97	1	0	0	0	0	1	0	0	0	1584	1102	38	1		1	C10orf105	10	73497499	Missense_Mutation	SNP	G	TCGA-VF-A8AA-01A-11D-A435-10		73497499	62037248	19	7179											
PAPSS2	9060	bcgsc.ca	37	chr10	89473069	89473069	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tatttctccattcgcaaaggTaaaaaaaaaaaaaaaaaaaa	3	5	1	0	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	PAPSS2,NS,lymphoid_neoplasm,0,2	PAPSS2	NM_004670	exon3	c.381+2T>A	.	CAAAGGTAAAAAA		88	19	0.22	90	8	0.0888888889		46	2	0	0					A	89473069	T	A	89473069	5	1	97	1	0	0	0	0	0	0	1	0	11481	1652	57	5	393	5	PAPSS2	10	89473069	Splice_Site	SNP	T	TCGA-VF-A8AA-01A-11D-A435-10	15975570	89473069	46061678	20	7180											
PIK3C2A	5286	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	17170258	17170258	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caaacttttagaacatagctGccaacatctacttgattcaa	4	10	2	2	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_002645	exon4	c.C1404T	p.G468G	ATAGCTGCCAACA		77	8	0.1	59	0	0				6	1	0.17				A	17170258	G	A	17170258	2	1	97	1	0	0	0	0	0	0	0	1	11956	1306	46	2		2	PIK3C2A	11	17170258	Silent	SNP	G	TCGA-VF-A8AA-01A-11D-A435-10		17170258	117836258	21	7181											
SCNN1A	6337	bcgsc.ca	37	chr12	6472752	6472753	+	Missense_Mutation	DNP	GC	GC	AA													ggggtgcggcagagtcccccGcaggtcgcgacggctgcggg					novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	GC	GC					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	SCNN1A	NM_001159576	exon2	c.G717T	p.R240W	TCCCCCGCAGGTC		81	8	0.1	33	0	0		54		3	0	0				AA	6472753	GC	AA	6472752	3	1	97	1	0	0	0	0	1	0	0	0	13980	1086	38	1	1512	1	SCNN1A	12	6472752	Missense_Mutation	DNP	GC	TCGA-VF-A8AA-01A-11D-A435-10		6472752	127379143	22	7182											
HSP90B1	7184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	104336993	104336993	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agaatgttgccaaggaaggaGtgaagttcgatgaaagtgag	15	3	0	4	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_003299	exon13	c.G1786C	p.V596L	GAAGGAGTGAAGT		97	11	0.11	80	0	0				2786	635	0.23				C	104336993	G	C	104336993	3	2	97	1	0	0	0	0	1	0	0	0	7445	1029	36	5	1836	5	HSP90B1	12	104336993	Missense_Mutation	SNP	G	TCGA-VF-A8AA-01A-11D-A435-10	97864241	104336993	29514902	23	7183											
VPS33A	65082	bcgsc.ca	37	chr12	122723203	122723203	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctattacacacggattggagGcaaactagtcttaacacctt	7	10	1	0	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	VPS33A	NM_022916	exon10	c.C1233T	p.C411C	TTGGAGGCAAACT		154	7	0.05	119	0	0		61		177	0	0				A	122723203	G	A	122723203	2	1	97	1	0	0	0	0	0	0	0	1	17260	1195	42	2		2	VPS33A	12	122723203	Silent	SNP	G	TCGA-VF-A8AA-01A-11D-A435-10	18386210	122723203	11128692	24	7184											
RHBDF1	64285	ucsc.edu	37	chr16	108653	108653	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaagagcaccacagccaGcagcttgaagaaggcacgcc	13	12	0	3	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	RHBDF1	NM_022450	exon18	c.C2254T	p.L752L	CAGCCAGCAGCTT		53	5	0.09	51	0	0		54		22	6	0.27				A	108653	G	A	108653	2	1	97	1	0	0	0	0	0	0	0	1	13368	962	34	2		2	RHBDF1	16	108653	Silent	SNP	G	TCGA-VF-A8AA-01A-11D-A435-10		108653	90246100	25	7185											
LUC7L	55692	bcgsc.ca	37	chr16	239209	239209	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agacgggttcagatctcgccGgcctccttctcttctgacct	9	15	4	3	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	LUC7L	NM_201412	exon10	c.C1104T	p.A368A	CTCGCCGGCCTCC		66	5	0.08	43	0	0		46		218	1	0				A	239209	G	A	239209	2	1	97	1	0	0	0	0	0	0	0	1	9126	1103	39	1		1	LUC7L	16	239209	Silent	SNP	G	TCGA-VF-A8AA-01A-11D-A435-10	130556	239209	90115544	26	7186											
CCDC102A	92922	ucsc.edu	37	chr16	57550226	57550226	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgtcctcagcctgggccagCtccttcttgagctcctccac	8	18	2	1	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	CCDC102A	NM_033212	exon7	c.G1398A	p.E466E	GGCCAGCTCCTTC		27	2	0.07	34	0	0		22		57	15	0.26				T	57550226	C	T	57550226	2	4	97	1	0	0	0	0	0	0	0	1	2754	796	28	2		2	CCDC102A	16	57550226	Silent	SNP	C	TCGA-VF-A8AA-01A-11D-A435-10	57311017	57550226	32804527	27	7187											
ANAPC11	51529	bcgsc.ca	37	chr17	79857807	79857807	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccgtaggcaaggtgcccGgcgacgactgcccgctggtg	15	15	0	0	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	ANAPC11	NM_001002244	exon4	c.G422T	p.R141L	GTGCCCGGCGACG		57	4	0.07	49	0	0		1		621	1	0				T	79857807	G	T	79857807	3	4	97	1	0	0	0	0	1	0	0	0	596	1116	39	1	432	1	ANAPC11	17	79857807	Missense_Mutation	SNP	G	TCGA-VF-A8AA-01A-11D-A435-10		79857807	1337403	28	7188											
NPC1	4864	hgsc.bcm.edu;bcgsc.ca	37	chr18	21134853	21134853	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atggtgcagttcgtgttataCggtgaaagaggggccaagca	15	6	0	2	rs367900403		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_000271	exon9	c.G1422A	p.P474P	GTTATACGGTGAA		139	6	0.04	178	0	0				17	0	0				T	21134853	C	T	21134853	2	4	97	1	0	0	0	0	0	0	0	1	10616	523	19	1		1	NPC1	18	21134853	Silent	SNP	C	TCGA-VF-A8AA-01A-11D-A435-10		21134853	56942395	29	7189											
AZU1	566	broad.mit.edu	37	chr19	827874	827874	+	Frame_Shift_Del	DEL	C	C	-													ggctgacagtcctggccctgCtggctggtctgctggcgtcc					novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	AZU1	NM_001700	exon1	c.28delC	p.L10fs	GCCCTGCTGGCTG		6	3	0.5	11	0	0		31		0	0					-	827874	C	-	827874	7	5	97	1	0	1	0	1	0	0	0	0	1241	796	28	0	30	0	AZU1	19	827874	Frame_Shift_Del	DEL	C	TCGA-VF-A8AA-01A-11D-A435-10		827874	58301109	30	7190											
PSPN	5623	broad.mit.edu	37	chr19	6375401	6375401	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtcggtgtagcgagtgggCcggcagcagggcccgccgtg	19	12	0	0	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	PSPN	NM_004158	exon2	c.G375T	p.R125R	AGTGGGCCGGCAG		20	6	0.3	14	1	0.0714285714		5		0	0					A	6375401	C	A	6375401	3	1	97	1	0	0	0	0	1	0	0	0	12766	726	26	2	98	2	PSPN	19	6375401	Missense_Mutation	SNP	C	TCGA-VF-A8AA-01A-11D-A435-10	5547527	6375401	52753582	31	7191											
BIRC8	112401	bcgsc.ca	37	chr19	53792954	53792955	+	Missense_Mutation	DNP	GC	GC	AT													tttgcttgaaatcaataaccGcgctgcacatgggacatctg					novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	GC	GC					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	BIRC8	NM_033341	exon1	c.G673A	p.A225M	ATAACCGCGCTGC		155	8	0.05	125	0	0		54		0	0					AT	53792955	GC	AT	53792954	3	1	97	1	0	0	0	0	1	0	0	0	1439	1087	38	1	40	1	BIRC8	19	53792954	Missense_Mutation	DNP	GC	TCGA-VF-A8AA-01A-11D-A435-10	47417553	53792954	5336029	32	7192											
NHS	4810	hgsc.bcm.edu	37	chrX	17750309	17750309	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cagagtcccctcagagcaccGatgatgcccatcaggggtca	11	14	3	3	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_198270	exon8	c.G4618A	p.D1540N	AGCACCGATGATG		182	8	0.04	161	0	0				1	0	0				A	17750309	G	A	17750309	3	1	97	1	0	0	0	0	1	0	0	0	10457	1058	37	1	4753	1	NHS	23	17750309	Missense_Mutation	SNP	G	TCGA-VF-A8AA-01A-11D-A435-10		17750309	137520251	33	7193											
PTCHD1	139411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	23411681	23411681	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	aaggtgaagttcatcgtcttCaatccgtcctttgtatacat	7	9	3	1	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_173495	exon3	c.C2046G	p.F682L	CGTCTTCAATCCG		96	11	0.11	55	0	0				1	0	0				G	23411681	C	G	23411681	3	3	97	1	0	0	0	0	1	0	0	0	12780	825	29	5	2056	5	PTCHD1	23	23411681	Missense_Mutation	SNP	C	TCGA-VF-A8AA-01A-11D-A435-10	5661372	23411681	131858879	34	7194											
CXorf48	54967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	134294393	134294393	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	actaatataaatattatcttCatttatagaagtaacacatc	2	6	2	1	novel		TCGA-VF-A8AA-01A-11D-A435-10	TCGA-VF-A8AA-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db8d85-3daa-42af-8649-41c53d90e9ce	5cf5995d-4ad7-4c93-858b-1e46e9cb6bfb	.	.	NM_017863	exon3	c.G367A	p.E123K	TATCTTCATTTAT		291	45	0.15	278	0	0				5	1	0.2				T	134294393	C	T	134294393	3	4	97	1	0	0	0	0	1	0	0	0	4134	835	29	3	447	3	CXorf48	23	134294393	Missense_Mutation	SNP	C	TCGA-VF-A8AA-01A-11D-A435-10	110882712	134294393	20976167	35	7195											
ZBTB48	3104	mdanderson.org	37	chr1	6646792	6646792	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgccaggagacattccgccGaaggatggagctgcgggtgc	17	10	0	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	ZBTB48	NM_005341	exon5	c.G1082T	p.R361L	TCCGCCGAAGGAT		56	3	0.05	62	0	0		33		82	0	0				T	6646792	G	T	6646792	3	4	98	1	0	0	0	0	1	0	0	0	17607	1058	37	1	1096	1	ZBTB48	1	6646792	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10		6646792	242603829	1	7196											
PADI2	11240	mdanderson.org	37	chr1	17431436	17431436	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cgcagggtggtgctgggcgaGagaagccagcgctgcttgcc	18	11	0	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	PADI2	NM_007365	exon2	c.C213A	p.L71L	GGGCGAGAGAAGC		39	3	0.08	38	0	0		72		40	0	0				T	17431436	G	T	17431436	2	4	98	1	0	0	0	0	0	0	0	1	11424	929	33	3		3	PADI2	1	17431436	Silent	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	10784644	17431436	231819185	2	7197											
PADI2	11240	mdanderson.org	37	chr1	17431515	17431515	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cctccacccacacgtgttccGagtgcttcaggctgaaggtt	10	14	1	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	PADI2	NM_007365	exon2	c.C134A	p.S45X	TGTTCCGAGTGCT		50	3	0.06	47	0	0		72		40	0	0				T	17431515	G	T	17431515	4	4	98	1	0	0	0	0	0	1	0	0	11424	1059	37	1	1923	1	PADI2	1	17431515	Nonsense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	79	17431515	231819106	3	7198											
KIF17	57576	mdanderson.org	37	chr1	21031250	21031250	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accagcgccgagatgacattGcccagtgccgagagcgacag	13	13	0	3	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	KIF17	NM_020816	exon5	c.C813A	p.G271G	GACATTGCCCAGT		50	3	0.06	52	0	0		130		5	0	0				T	21031250	G	T	21031250	2	4	98	1	0	0	0	0	0	0	0	1	8320	1306	46	2		2	KIF17	1	21031250	Silent	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	3599735	21031250	228219371	4	7199											
RPS6KA1	6195	mdanderson.org	37	chr1	26898408	26898408	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcattctgctgtacaccatGctggcagggtgagtgcccct	13	12	1	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	RPS6KA1	NM_001006665	exon18	c.G1848T	p.M616I	CACCATGCTGGCA		34	3	0.09	16	0	0		65		215	0	0				T	26898408	G	T	26898408	3	4	98	1	0	0	0	0	1	0	0	0	13701	1319	46	2	2034	2	RPS6KA1	1	26898408	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	5867158	26898408	222352213	5	7200											
MECR	51102	bcgsc.ca	37	chr1	29542572	29542572	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcttcagcccggtcacattGctgcccaccgctaccacctg	9	18	2	0	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	MECR	NM_016011	exon3	c.C351A	p.S117R	CACATTGCTGCCC		134	7	0.05	124	0	0		31		75	0	0				T	29542572	G	T	29542572	3	4	98	1	0	0	0	0	1	0	0	0	9473	1310	46	2	802	2	MECR	1	29542572	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	2644164	29542572	219708049	6	7201											
GON4L	54856	ucsc.edu	37	chr1	155726782	155726782	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tggaccccgatctcttttttCctcttgttctttgaggctgt	8	11	3	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	GON4L	NM_001037533	exon27	c.G5484A	p.R1828R	TTTTTTCCTCTTG		194	1	0.01	132	0	0		392		76	12	0.16				T	155726782	C	T	155726782	2	4	98	1	0	0	0	0	0	0	0	1	6610	854	30	3		3	GON4L	1	155726782	Silent	SNP	C	TCGA-VF-A8AB-01A-31D-A435-10	126184210	155726782	93523839	7	7202											
SNAP47	116841	mdanderson.org	37	chr1	227947187	227947187	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctcagtctggcatgcagGttagtgaccgacaaggcagt	13	10	2	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	SNAP47	NM_053052	exon3	c.1123+1G>T	.	ATGCAGGTTAGTG		80	4	0.05	77	0	0		42		0	0					T	227947187	G	T	227947187	5	4	98	1	0	0	0	0	0	0	1	0	14885	1275	44	3	1134	3	SNAP47	1	227947187	Splice_Site	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	72220405	227947187	21303434	8	7203											
RAB3GAP1	22930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	135920150	135920150	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcactatctggcaatccagaAacctgcagaccttgctcggc	9	14	1	2	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_001172435	exon20	c.A2315T	p.K772I	TCCAGAAACCTGC		113	11	0.1	116	0	0				118	3	0.03				T	135920150	A	T	135920150	3	4	98	1	0	0	0	0	1	0	0	0	12986	14	1	5	2393	5	RAB3GAP1	2	135920150	Missense_Mutation	SNP	A	TCGA-VF-A8AB-01A-31D-A435-10		135920150	107279223	9	7204											
SLC38A11	151258	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	165793940	165793940	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgtagagatgagggagacCtgtaaaagaaaatacaagga	12	5	0	4	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	SLC38A11,colon,carcinoma,0,1	SLC38A11	NM_173512	exon6	c.304-1G>C	.	GGAGACCTGTAAA		55	6	0.11	46	0	0		41	1	0	0					G	165793940	C	G	165793940	5	3	98	1	0	0	0	0	0	0	1	0	14657	695	24	5	875	5	SLC38A11	2	165793940	Splice_Site	SNP	C	TCGA-VF-A8AB-01A-31D-A435-10	29873790	165793940	77405433	10	7205											
SP140L	93349	mdanderson.org	37	chr2	231193483	231193483	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tctttttagggggctgaacgGaggtgtttcacaagtagcaa	13	6	2	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	SP140L	NM_138402	exon2	c.G44T	p.G15V	TGAACGGAGGTGT		87	4	0.05	106	0	0		68		20	0	0				T	231193483	G	T	231193483	3	4	98	1	0	0	0	0	1	0	0	0	15016	1174	41	3	50	3	SP140L	2	231193483	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	65399543	231193483	12005890	11	7206											
GRIP2	80852	broad.mit.edu	37	chr3	14575374	14575374	+	RNA	DEL	T	T	-													ttcagcctgtgagccatctcTtttcccagctgtcagagact					novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	GRIP2	.	.	.	.	CATCTCTTTTCCC		6	2	0.33	7	0	0		68		0	0					-	14575374	T	-	14575374	6	5	98	0	1	1	0	1	0	0	0	0	6828	1624	56	0		0	GRIP2	3	14575374	RNA	DEL	T	TCGA-VF-A8AB-01A-31D-A435-10		14575374	183447056	12	7207											
NBEAL2	23218	mdanderson.org	37	chr3	47036675	47036675	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctctgtgacagctgccctGccagccgtgccacctgtgtg	13	15	1	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	NBEAL2	NM_015175	exon13	c.G1450T	p.A484S	TGCCCTGCCAGCC		70	11	0.16	50	4	0.08		267		16	0	0				T	47036675	G	T	47036675	3	4	98	1	0	0	0	0	1	0	0	0	10236	1319	46	2	1500	2	NBEAL2	3	47036675	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	32461301	47036675	150985755	13	7208											
SPINK8	646424	bcgsc.ca;mdanderson.org	37	chr3	48362556	48362556	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttcagaggccataggaaGggggaagtctggaagacaaa	14	6	3	2	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	SPINK8	NM_001080525	exon2	c.C76A	p.L26I	TAGGAAGGGGGAA		78	5	0.06	75	0	0		5		0	0					T	48362556	G	T	48362556	3	4	98	1	0	0	0	0	1	0	0	0	15120	1000	35	3	233	3	SPINK8	3	48362556	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	1325881	48362556	149659874	14	7209											
CAMKV	79012	broad.mit.edu	37	chr3	49897047	49897047	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcttccatcggtggctgGggtgacactgccatcagtgg	15	10	1	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	CAMKV	NM_024046	exon11	c.C1210A	p.P404T	TGGCTGGGGTGAC		133	5	0.04	153	0	0		84		4	0	0				T	49897047	G	T	49897047	3	4	98	1	0	0	0	0	1	0	0	0	2626	1232	43	3	299	3	CAMKV	3	49897047	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	1534491	49897047	148125383	15	7210											
FAM194A	131831	mdanderson.org	37	chr3	150421549	150421549	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcctcctcctccacctctTcctcctcctcctccacctct	0	26	2	0	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	FAM194A,NS,carcinoma,+1,1	FAM194A	NM_152394	exon1	c.A137T	p.E46V	ACCTCTTCCTCCT		54	8	0.15	44	3	0.0681818182		91	1	0	0					A	150421549	T	A	150421549	3	1	98	1	0	0	0	0	1	0	0	0	5557	1783	62	5	1910	5	FAM194A	3	150421549	Missense_Mutation	SNP	T	TCGA-VF-A8AB-01A-31D-A435-10	100524502	150421549	47600881	16	7211											
SPINK2	6691	mdanderson.org	37	chr4	57687798	57687798	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtaactgccaggagcaGcagcgccaagcgcagcaccg	14	13	0	0	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	SPINK2	NM_001271722	exon1	c.C31A	p.L11M	GGAGCAGCAGCGC		48	3	0.06	33	0	0		12		7	0	0				T	57687798	G	T	57687798	3	4	98	1	0	0	0	0	1	0	0	0	15115	962	34	2	239	2	SPINK2	4	57687798	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10		57687798	133466478	17	7212											
TRIO	7204	mdanderson.org	37	chr5	14369582	14369582	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caaactctgagacggaccacGtgacgcccatgatcagcaag	10	13	2	3	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	TRIO	NM_007118	exon18	c.G3166T	p.V1056L	GACCACGTGACGC		49	3	0.06	49	0	0		305		7	0	0				T	14369582	G	T	14369582	3	4	98	1	0	0	0	0	1	0	0	0	16612	1145	40	1	3236	1	TRIO	5	14369582	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10		14369582	166545678	18	7213											
NPR3	4883	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	32712263	32712263	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggcggcgcggggcgccaaGccagaccttatcctggggcc	17	15	0	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_000908	exon1	c.G381A	p.K127K	CGCCAAGCCAGAC		109	22	0.2	139	0	0				0	0					A	32712263	G	A	32712263	2	1	98	1	0	0	0	0	0	0	0	1	10643	962	34	2		2	NPR3	5	32712263	Silent	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	18342681	32712263	148202997	19	7214											
MAP1B	4131	mdanderson.org	37	chr5	71482492	71482492	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acaagctgctcgtgctgaccGggcagtgctttgaaaatacc	11	11	0	2	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	MAP1B	NM_005909	exon4	c.G421T	p.G141W	CTGACCGGGCAGT		64	3	0.05	90	0	0		243		1	0	0				T	71482492	G	T	71482492	3	4	98	1	0	0	0	0	1	0	0	0	9277	1116	39	1	435	1	MAP1B	5	71482492	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	38770229	71482492	109432768	20	7215											
EIF4E1B	253314	broad.mit.edu	37	chr5	176070126	176070128	+	In_Frame_Del	DEL	AGA	AGA	-													ccgagagtgggaggaggaggAgaaggaggaggaggcagcag					novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	AGA	AGA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	EIF4E1B	NM_001099408	exon4	c.59_61del	p.20_21del	AGGAGGAGAAGGA		153	8	0.05	143	0	0		24		0	0					-	176070128	AGA	-	176070126	7	5	98	1	0	1	0	1	0	0	0	0	5057	304	11	0	65	0	EIF4E1B	5	176070126	In_Frame_Del	DEL	AGA	TCGA-VF-A8AB-01A-31D-A435-10	104587634	176070126	4845134	21	7216											
DOPEY1	23033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	83847668	83847668	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caaaacctaaagtaaaacttGccagaaaaaaggatgatgac	7	7	0	3	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_015018	exon21	c.G3907T	p.A1303S	AAACTTGCCAGAA		53	7	0.13	69	0	0				8	0	0				T	83847668	G	T	83847668	3	4	98	1	0	0	0	0	1	0	0	0	4734	1319	46	2	3981	2	DOPEY1	6	83847668	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10		83847668	87267399	22	7217											
RBAK	57786	mdanderson.org	37	chr7	5104859	5104859	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acatcaaagagtacacacagGcgagaaaccctatgaatgtt	8	9	1	3	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	RBAK	NM_021163	exon5	c.G1772T	p.G591V	ACACAGGCGAGAA		44	4	0.09	38	0	0		82		8	0	0				T	5104859	G	T	5104859	3	4	98	1	0	0	0	0	1	0	0	0	13151	1203	42	2	1786	2	RBAK	7	5104859	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10		5104859	154033804	23	7218											
STK17A	9263	mdanderson.org	37	chr7	43622932	43622932	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccggggtctgagcgggccGtgccggccgccgccgccgcc	19	18	1	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	STK17A	NM_004760	exon1	c.G90A	p.P30P	CGGGCCGTGCCGG		26	2	0.08	31	0	0		31		2	0	0				A	43622932	G	A	43622932	2	1	98	1	0	0	0	0	0	0	0	1	15345	1132	40	1		1	STK17A	7	43622932	Silent	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	38518073	43622932	115515731	24	7219											
MAGI2	9863	mdanderson.org	37	chr7	77762375	77762375	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccgaggtggggctgttgaGctctgcgatggagaaccaaa	16	8	1	2	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	MAGI2	NM_012301	exon18	c.C3034A	p.L1012I	TGTTGAGCTCTGC		38	3	0.08	35	0	0		246		0	0					T	77762375	G	T	77762375	3	4	98	1	0	0	0	0	1	0	0	0	9240	971	34	2	1353	2	MAGI2	7	77762375	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	34139443	77762375	81376288	25	7220											
FAM49B	51571	mdanderson.org	37	chr8	130863111	130863111	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatgactctgcatacactaGccattgtgcttaaacaatct	6	11	2	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	FAM49B	NM_001256763	exon10	c.C683A	p.A228D	ACACTAGCCATTG		46	3	0.07	48	0	0		36		323	0	0				T	130863111	G	T	130863111	3	4	98	1	0	0	0	0	1	0	0	0	5611	971	34	2	307	2	FAM49B	8	130863111	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10		130863111	15500911	26	7221											
FAM166B	730112	mdanderson.org	37	chr9	35562684	35562684	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gagggtccctgtcatccatgGagtagggagaagcctgtgag	16	8	1	2	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	FAM166B	NM_001164310	exon4	c.C506A	p.S169Y	TCCATGGAGTAGG		51	3	0.06	66	0	0		19		0	0					T	35562684	G	T	35562684	3	4	98	1	0	0	0	0	1	0	0	0	5511	1174	41	3	152	3	FAM166B	9	35562684	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10		35562684	105650747	27	7222											
JMJD1C	221037	broad.mit.edu	37	chr10	64958278	64958278	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atttaacttccttaccatccTttttcacccaggacaaagct	3	13	1	0	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	JMJD1C	NM_032776	exon12	c.A5486G	p.K1829R	CCATCCTTTTTCA		118	3	0.03	129	0	0		347		31	0	0				C	64958278	T	C	64958278	3	2	98	1	0	0	0	0	1	0	0	0	7993	1609	56	4	2196	4	JMJD1C	10	64958278	Missense_Mutation	SNP	T	TCGA-VF-A8AB-01A-31D-A435-10		64958278	70576469	28	7223											
CNNM1	26507	broad.mit.edu	37	chr10	101124187	101124187	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tttccagggtaaagtggaggTggaggttggtaaggaaggcc	18	4	0	0	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	CNNM1,extremity,malignant_melanoma,0,1	CNNM1	NM_020348	exon5	c.T2042G	p.V681G	TGGAGGTGGAGGT		45	11	0.24	49	10	0.2040816327		101	1	0	0					G	101124187	T	G	101124187	3	3	98	1	0	0	0	0	1	0	0	0	3635	1696	59	4	2060	4	CNNM1	10	101124187	Missense_Mutation	SNP	T	TCGA-VF-A8AB-01A-31D-A435-10	36165909	101124187	34410560	29	7224											
MUC2	4583	mdanderson.org	37	chr11	1093304	1093304	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caccaccaccactacggtgaCcccaaccccaacacccaccg	4	23	0	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	MUC2	NM_002457	exon30	c.C5123T	p.T1708I	CGGTGACCCCAAC		33	3	0.09	27	0	0		614		0	0					T	1093304	C	T	1093304	3	4	98	1	0	0	0	0	1	0	0	0	10022	507	18	3	5241	3	MUC2	11	1093304	Missense_Mutation	SNP	C	TCGA-VF-A8AB-01A-31D-A435-10		1093304	133913212	30	7225											
MOB2	81532	broad.mit.edu	37	chr11	1501963	1501963	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcccccgcgcactgttgctgGccagccactcgttaaggtca	11	16	1	0	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	MOB2	NM_001172223	exon2	c.C263G	p.A88G	TTGCTGGCCAGCC		65	8	0.12	84	4	0.0476190476		23		65	1	0.02				C	1501963	G	C	1501963	3	2	98	1	0	0	0	0	1	0	0	0	9729	1203	42	5	559	5	MOB2	11	1501963	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	408659	1501963	133504553	31	7226											
EIF3F	8665	mdanderson.org	37	chr11	8013657	8013657	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gttgacatggaatttgctaaGaatatgtatgaactgcataa	9	4	0	3	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	EIF3F	NM_003754	exon3	c.G462T	p.K154N	TGCTAAGAATATG		39	3	0.08	41	0	0		23		229	0	0				T	8013657	G	T	8013657	3	4	98	1	0	0	0	0	1	0	0	0	5044	933	33	3	472	3	EIF3F	11	8013657	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	6511694	8013657	126992859	32	7227											
SBF2	81846	mdanderson.org	37	chr11	9801975	9801975	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	accatgggcatcaggcatcaGagatacaactctggatcttg	10	10	4	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	SBF2	NM_030962	exon40	c.C5540A	p.S1847Y	GCATCAGAGATAC		53	3	0.06	60	0	0		146		40	0	0				T	9801975	G	T	9801975	3	4	98	1	0	0	0	0	1	0	0	0	13911	942	33	3	13	3	SBF2	11	9801975	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	1788318	9801975	125204541	33	7228											
FOLH1	2346	bcgsc.ca	37	chr11	49204790	49204790	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaattccacgcctataagcAtattctgaaaaaaaaaattg	5	8	1	1	rs76509850	bycluster;byfrequency	TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	FOLH1	NM_004476	exon7	c.T831C	p.Y277Y	ATAAGCATATTCT		167	12	0.07	196	0	0		141		3	0	0				G	49204790	A	G	49204790	2	3	98	1	0	0	0	0	0	0	0	1	6011	224	8	4		4	FOLH1	11	49204790	Silent	SNP	A	TCGA-VF-A8AB-01A-31D-A435-10	39402815	49204790	85801726	34	7229											
OR5F1	338674	mdanderson.org	37	chr11	55761334	55761334	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctaggtctcaggtaagtataGatgcaggtggcatagaacag	13	6	1	2	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	OR5F1	NM_003697	exon1	c.C768A	p.I256I	AGTATAGATGCAG		92	4	0.04	92	0	0		116		0	0					T	55761334	G	T	55761334	2	4	98	1	0	0	0	0	0	0	0	1	11204	932	33	3		3	OR5F1	11	55761334	Silent	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	6556544	55761334	79245182	35	7230											
MED19	219541	mdanderson.org	37	chr11	57479594	57479594	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctggtccgaagccgagtgCggttgggggcggtggtgggt	21	8	0	0	rs202123309	by1000genomes;alternate_allele	TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	MED19	NM_153450	exon1	c.G58A	p.A20T	CGAGTGCGGTTGG		62	3	0.05	71	0	0		15		17	0	0				T	57479594	C	T	57479594	3	4	98	1	0	0	0	0	1	0	0	0	9486	768	27	1	542	1	MED19	11	57479594	Missense_Mutation	SNP	C	TCGA-VF-A8AB-01A-31D-A435-10	1718260	57479594	77526922	36	7231											
DDB1	1642	broad.mit.edu	37	chr11	61071379	61071379	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttgtaggcaagcagcagCactgagcgcataaggtcgcc	14	11	0	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	DDB1	NM_001923	exon22	c.G2790T	p.V930V	CAGCAGCACTGAG		111	7	0.06	109	2	0.0183486239		100		838	11	0.01				A	61071379	C	A	61071379	2	1	98	1	0	0	0	0	0	0	0	1	4346	697	25	2		2	DDB1	11	61071379	Silent	SNP	C	TCGA-VF-A8AB-01A-31D-A435-10	3591785	61071379	73935137	37	7232											
PITPNM1	9600	mdanderson.org	37	chr11	67265611	67265611	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cctaaccgctgacctgcccaCagaagccggcaccctcaggt	9	18	1	2	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	PITPNM1	NM_001130848	exon11	c.G1667T	p.C556F	TGCCCACAGAAGC		24	2	0.08	30	0	0		84		57	0	0				A	67265611	C	A	67265611	3	1	98	1	0	0	0	0	1	0	0	0	11997	478	17	3	2123	3	PITPNM1	11	67265611	Missense_Mutation	SNP	C	TCGA-VF-A8AB-01A-31D-A435-10	6194232	67265611	67740905	38	7233											
FAM181B	220382	mdanderson.org	37	chr11	82443763	82443763	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgccgcggggggcagtcaGggggctctttttggtcgggg	21	10	2	0	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	FAM181B	NM_175885	exon1	c.C1009A	p.L337M	CAGTCAGGGGGCT		49	3	0.06	49	0	0		14		0	0					T	82443763	G	T	82443763	3	4	98	1	0	0	0	0	1	0	0	0	5539	991	35	3	275	3	FAM181B	11	82443763	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	15178152	82443763	52562753	39	7234											
FGF23	8074	mdanderson.org	37	chr12	4488714	4488714	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgcagacgctgcacaagGcacagacccagagcctgagg	13	13	0	4	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	FGF23	NM_020638	exon1	c.C35A	p.A12D	CACAAGGCACAGA		34	4	0.12	27	0	0		57		0	0					T	4488714	G	T	4488714	3	4	98	1	0	0	0	0	1	0	0	0	5884	1203	42	2	732	2	FGF23	12	4488714	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10		4488714	129363181	40	7235											
NAV3	89795	bcgsc.ca;mdanderson.org	37	chr12	78513322	78513322	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagaaaaaccagtttggacGgttcacagaatcaggatgat	12	6	2	3	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	NAV3	NM_014903	exon15	c.G3346T	p.G1116C	TTGGACGGTTCAC		126	5	0.04	110	0	0		506		0	0					T	78513322	G	T	78513322	3	4	98	1	0	0	0	0	1	0	0	0	10232	1116	39	1	3404	1	NAV3	12	78513322	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	74024608	78513322	55338573	41	7236											
SART3	9733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	108938917	108938917	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	acaaccacaggtactcacccGagcagcttccacaatcgcac	6	17	1	0	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_014706	exon4	c.C727T	p.R243W	TCACCCGAGCAGC		193	49	0.25	198	0	0				63	18	0.29				A	108938917	G	A	108938917	3	1	98	1	0	0	0	0	1	0	0	0	13899	1057	37	1	2228	1	SART3	12	108938917	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	30425595	108938917	24912978	42	7237											
OAS1	4938	broad.mit.edu	37	chr12	113354329	113354329	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagtgtaagaagaagcttGggaagctgccacctcagtat	11	9	2	2	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	OAS1	NM_001032409	exon4	c.G670T	p.G224W	AAGCTTGGGAAGC		132	4	0.03	115	0	0		128		188	0	0				T	113354329	G	T	113354329	3	4	98	1	0	0	0	0	1	0	0	0	10846	1348	47	3	684	3	OAS1	12	113354329	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	4415412	113354329	20497566	43	7238											
RASAL1	8437	mdanderson.org	37	chr12	113565942	113565942	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaggtgcaccgtgtactccTccccccagaaggggcccagg	13	16	0	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	RASAL1	NM_001193520	exon4	c.A164G	p.E55G	TACTCCTCCCCCC		47	3	0.06	44	0	0		89		5	0	0				C	113565942	T	C	113565942	3	2	98	1	0	0	0	0	1	0	0	0	13114	1551	54	4	2326	4	RASAL1	12	113565942	Missense_Mutation	SNP	T	TCGA-VF-A8AB-01A-31D-A435-10	211613	113565942	20285953	44	7239											
TPCN1	53373	mdanderson.org	37	chr12	113714756	113714756	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgttcgacaccttcaatgaCattgagaaacgcaagttcaa	8	9	2	2	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	TPCN1	NM_001143819	exon12	c.C1191T	p.D397D	CAATGACATTGAG		48	3	0.06	48	0	0		109		60	4	0.07				T	113714756	C	T	113714756	2	4	98	1	0	0	0	0	0	0	0	1	16455	477	17	3		3	TPCN1	12	113714756	Silent	SNP	C	TCGA-VF-A8AB-01A-31D-A435-10	148814	113714756	20137139	45	7240											
EP400	57634	hgsc.bcm.edu	37	chr12	132547105	132547105	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcaacaacagcagcagcaGcagcagcagcagcagcagca	11	14	0	0	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_015409	exon47	c.G8193A	p.Q2731Q	GCAGCAGCAGCAG		101	9	0.09	96	0	0				33	0	0				A	132547105	G	A	132547105	2	1	98	1	0	0	0	0	0	0	0	1	5177	962	34	2		2	EP400	12	132547105	Silent	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	18832349	132547105	1304790	46	7241											
HSPH1	10808	mdanderson.org	37	chr13	31727066	31727066	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaacacagatcgcctctcaGcatctgtaaagaaggagggg	11	10	2	2	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	HSPH1	NM_006644	exon5	c.C452A	p.A151D	CTCTCAGCATCTG		50	3	0.06	67	0	0		65		72	0	0				T	31727066	G	T	31727066	3	4	98	1	0	0	0	0	1	0	0	0	7474	971	34	2	2180	2	HSPH1	13	31727066	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10		31727066	83442812	47	7242											
SPPL2A	84888	mdanderson.org	37	chr15	51028300	51028300	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacattgagtattcatacctGtcttcatttcgaaacacagc	5	10	3	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	SPPL2A	NM_032802	exon8	c.C930A	p.D310E	ATACCTGTCTTCA		25	2	0.08	39	0	0		26		186	0	0				T	51028300	G	T	51028300	3	4	98	1	0	0	0	0	1	0	0	0	15143	1368	48	3	664	3	SPPL2A	15	51028300	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10		51028300	51503092	48	7243											
ACAN	176	bcgsc.ca	37	chr15	89395085	89395085	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacccacatcaccctctgGtgtggaggagtggatcgtga	12	12	2	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	ACAN	NM_001135	exon11	c.G2087T	p.G696V	CCTCTGGTGTGGA		154	6	0.04	203	1	0.0049261084		220		1	0	0				T	89395085	G	T	89395085	3	4	98	1	0	0	0	0	1	0	0	0	117	1261	44	3	2125	3	ACAN	15	89395085	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	38366785	89395085	13136307	49	7244											
HAPLN3	145864	mdanderson.org	37	chr15	89422428	89422428	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaccaccgcagcctgctctGcacagacctgctggccctcg	9	20	1	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	HAPLN3	NM_178232	exon4	c.C566T	p.A189V	TGCTCTGCACAGA		47	3	0.06	67	0	0		43		83	1	0.01				A	89422428	G	A	89422428	3	1	98	1	0	0	0	0	1	0	0	0	6996	1319	46	2	524	2	HAPLN3	15	89422428	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	27343	89422428	13108964	50	7245											
WFIKKN1	117166	mdanderson.org	37	chr16	683468	683468	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgccagcaggcctgtgcccGcggccccggcgacgcctgcg	15	18	0	0	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	WFIKKN1	NM_053284	exon2	c.G1058T	p.R353L	GTGCCCGCGGCCC		9	2	0.22	8	0	0		30		2	0	0				T	683468	G	T	683468	3	4	98	1	0	0	0	0	1	0	0	0	17417	1087	38	1	1064	1	WFIKKN1	16	683468	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10		683468	89671285	51	7246											
PKD1	5310	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	2156409	2156409	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ctgcactcacccgtgcattcGaagtgcaccttggtggtgag	12	12	1	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_000296	exon18	c.C7479G	p.F2493L	GCATTCGAAGTGC		32	6	0.19	27	0	0				10	4	0.4				C	2156409	G	C	2156409	3	2	98	1	0	0	0	0	1	0	0	0	12010	1049	37	5	5548	5	PKD1	16	2156409	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	1472941	2156409	88198344	52	7247											
C16orf88	400506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	19722702	19722702	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgggctgtacctggtctaTgtgcgcctcatccatgttgc	11	12	3	0	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	C16orf88,NS,carcinoma,0,1	C16orf88	NM_001012991	exon3	c.A979G	p.I327V	GGTCTATGTGCGC		100	14	0.14	123	0	0		0	1	83	18	0.22				C	19722702	T	C	19722702	3	2	98	1	0	0	0	0	1	0	0	0	1848	1464	51	4	409	4	C16orf88	16	19722702	Missense_Mutation	SNP	T	TCGA-VF-A8AB-01A-31D-A435-10	17566293	19722702	70632051	53	7248											
ACSM2A	123876	broad.mit.edu	37	chr16	20492208	20492208	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accctgctgtggttgagacgGctgtgatcagcagcccagac	13	12	1	3	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	ACSM2A	NM_001010845	exon13	c.G1474A	p.A492T	GAGACGGCTGTGA		186	7	0.04	188	0	0		120		0	0					A	20492208	G	A	20492208	3	1	98	1	0	0	0	0	1	0	0	0	183	1203	42	2	1516	2	ACSM2A	16	20492208	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	769506	20492208	69862545	54	7249											
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	47630436	47630436	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cactttatatcatcgcaaaaCtcctgggtaagtggagaaga	9	8	1	2	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_000293	exon13	c.C1357G	p.L453V	GCAAAACTCCTGG		134	16	0.12	119	0	0				21	1	0.05				G	47630436	C	G	47630436	3	3	98	1	0	0	0	0	1	0	0	0	11892	565	20	5	1466	5	PHKB	16	47630436	Missense_Mutation	SNP	C	TCGA-VF-A8AB-01A-31D-A435-10	27138228	47630436	42724317	55	7250											
SLC12A3	6559	mdanderson.org	37	chr16	56919268	56919268	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gaggtggaagaccacatcaaGaactaccggtgagcagagct	13	9	1	4	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	SLC12A3	NM_001126108	exon15	c.G1917T	p.K639N	CATCAAGAACTAC		35	3	0.09	54	0	0		99		0	0					T	56919268	G	T	56919268	3	4	98	1	0	0	0	0	1	0	0	0	14438	933	33	3	1975	3	SLC12A3	16	56919268	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	9288832	56919268	33435485	56	7251											
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr16	89345676	89345677	+	Missense_Mutation	DNP	TC	TC	AA													tgtggtagggctcgatggcaTccagcttgatggcgtccacg					novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	TC	TC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_001256183	exon9	c.G7273T	p.D2425F	ATGGCATCCAGCT		131	15	0.11	107	0	0				133	7	0.05				AA	89345677	TC	AA	89345676	3	1	98	1	0	0	0	0	1	0	0	0	635	1435	50	5	737	5	ANKRD11	16	89345676	Missense_Mutation	DNP	TC	TCGA-VF-A8AB-01A-31D-A435-10	32426408	89345676	1009077	57	7252											
SPNS3	201305	broad.mit.edu;mdanderson.org	37	chr17	4351498	4351498	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcctgcttatcctgctgGttccagacccaccccgggga	10	15	0	2	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	SPNS3	NM_182538	exon6	c.G670T	p.V224F	CTGCTGGTTCCAG		52	4	0.08	64	0	0		52		0	0					T	4351498	G	T	4351498	3	4	98	1	0	0	0	0	1	0	0	0	15131	1261	44	3	692	3	SPNS3	17	4351498	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10		4351498	76843712	58	7253											
ACAP1	9744	mdanderson.org	37	chr17	7252473	7252473	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	taatgccacaccgctgatccAggccacagctgctgtaagag	10	13	0	2	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	ACAP1	NM_014716	exon18	c.A1838T	p.Q613L	TGATCCAGGCCAC		56	3	0.05	54	0	0		66		126	0	0				T	7252473	A	T	7252473	3	4	98	1	0	0	0	0	1	0	0	0	118	188	7	5	1908	5	ACAP1	17	7252473	Missense_Mutation	SNP	A	TCGA-VF-A8AB-01A-31D-A435-10	2900975	7252473	73942737	59	7254											
FGF11	2256	mdanderson.org	37	chr17	7345131	7345131	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctgtgggcctccgtgtggTcaccatccagagcgccaagc	12	16	1	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	FGF11	NM_004112	exon3	c.T341C	p.V114A	GTGTGGTCACCAT		61	3	0.05	66	0	0		14		13	0	0				C	7345131	T	C	7345131	3	2	98	1	0	0	0	0	1	0	0	0	5872	1667	58	4	351	4	FGF11	17	7345131	Missense_Mutation	SNP	T	TCGA-VF-A8AB-01A-31D-A435-10	92658	7345131	73850079	60	7255											
MYOCD	93649	mdanderson.org	37	chr17	12649289	12649289	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttcttcaacgccactgaGcaatacccccttgtctcctg	5	17	4	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	MYOCD_ENST00000425538,NS,carcinoma,0,2	MYOCD	NM_153604	exon9	c.G1025T	p.S342I	CACTGAGCAATAC		128	5	0.04	140	0	0		291	2	1	0	0				T	12649289	G	T	12649289	3	4	98	1	0	0	0	0	1	0	0	0	10134	971	34	2	1059	2	MYOCD	17	12649289	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	5304158	12649289	68545921	61	7256											
KRTAP4-12	83755	mdanderson.org	37	chr17	39280273	39280273	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcagctggggcggcagcaGgtggtcctgcagcaggtggt	19	10	0	0	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	KRTAP4-12	NM_031854	exon1	c.C102A	p.T34T	GCAGCAGGTGGTC		56	6	0.11	45	1	0.0222222222		32		0	0					T	39280273	G	T	39280273	2	4	98	1	0	0	0	0	0	0	0	1	8592	987	35	3		3	KRTAP4-12	17	39280273	Silent	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	26630984	39280273	41914937	62	7257											
CLTC	1213	bcgsc.ca	37	chr17	57746271	57746271	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtagagaaagcaactgctaCgatcctgagcgagtcaagaa	11	8	1	3	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	CLTC	NM_004859	exon14	c.C2262T	p.Y754Y	CTGCTACGATCCT		46	4	0.09	31	0	0		124		135	0	0				T	57746271	C	T	57746271	2	4	98	1	0	0	0	0	0	0	0	1	3589	547	19	1		1	CLTC	17	57746271	Silent	SNP	C	TCGA-VF-A8AB-01A-31D-A435-10	18465998	57746271	23448939	63	7258											
DSG1	1828	broad.mit.edu	37	chr18	28934743	28934743	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaccgaccagcatcaaacGtggtagtgacagagagagtg	12	8	1	3	rs201083341	bycluster;by1000genomes	TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	DSG1	NM_001942	exon15	c.G2584T	p.V862L	TCAAACGTGGTAG		121	4	0.03	143	0	0		176		0	0					T	28934743	G	T	28934743	3	4	98	1	0	0	0	0	1	0	0	0	4802	1145	40	1	2642	1	DSG1	18	28934743	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10		28934743	49142505	64	7259											
GALR1	2587	mdanderson.org	37	chr18	74962795	74962795	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaggccaccgtgtacgcGctgcccacctgggtgctggg	14	15	0	0	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	GALR1	NM_001480	exon1	c.G291T	p.A97A	GTACGCGCTGCCC		40	3	0.08	46	0	0		53		0	0					T	74962795	G	T	74962795	2	4	98	1	0	0	0	0	0	0	0	1	6266	1074	38	1		1	GALR1	18	74962795	Silent	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	46028052	74962795	3114453	65	7260											
CHAF1A	10036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	4409387	4409387	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggtgcagggaggagaggCgactcccaggaatgttcgcc	18	9	0	1	rs188842259	bycluster;by1000genomes	TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_005483	exon3	c.C591T	p.G197G	GAGAGGCGACTCC		120	9	0.08	82	0	0	0			60	11	0.18				T	4409387	C	T	4409387	2	4	98	1	0	0	0	0	0	0	0	1	3333	755	27	1		1	CHAF1A	19	4409387	Silent	SNP	C	TCGA-VF-A8AB-01A-31D-A435-10		4409387	54719596	66	7261											
MUC16	94025	mdanderson.org	37	chr19	9059459	9059459	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcctgggatggatgttctGctagaagagatggcttctgt	16	6	2	2	rs201658687		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	MUC16	NM_024690	exon3	c.C27987A	p.S9329R	TGTTCTGCTAGAA		99	5	0.05	79	0	0		4315		0	0					T	9059459	G	T	9059459	3	4	98	1	0	0	0	0	1	0	0	0	10020	1310	46	2	15864	2	MUC16	19	9059459	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	4650072	9059459	50069524	67	7262											
ZNF700	90592	hgsc.bcm.edu	37	chr19	12060269	12060269	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agagaaaccctatgaatgtaAggaatgtgggaaagccttca	11	6	1	2	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_001271848	exon4	c.A1439G	p.K480R	AATGTAAGGAATG		83	4	0.05	66	0	0				25	0	0				G	12060269	A	G	12060269	3	3	98	1	0	0	0	0	1	0	0	0	18159	72	3	4	1444	4	ZNF700	19	12060269	Missense_Mutation	SNP	A	TCGA-VF-A8AB-01A-31D-A435-10	3000810	12060269	47068714	68	7263											
ATP13A1	57130	mdanderson.org	37	chr19	19770791	19770791	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggtcgctttgctggggtcGtactcctgacagagacaaag	13	9	0	2	rs111834843	bycluster;byfrequency;by1000genomes	TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	ATP13A1,colon,carcinoma,0,1	ATP13A1	NM_020410	exon2	c.C402T	p.Y134Y	GGGGTCGTACTCC		55	3	0.05	40	0	0	0.002	82	1	80	0	0				A	19770791	G	A	19770791	2	1	98	1	0	0	0	0	0	0	0	1	1122	1140	40	1		1	ATP13A1	19	19770791	Silent	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	7710522	19770791	39358192	69	7264											
MEGF8	1954	mdanderson.org	37	chr19	42861670	42861670	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaatggcttcaaccagcagCtgctggagtaccagctggca	11	11	1	0	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	MEGF8	NM_001271938	exon28	c.C4945A	p.L1649M	CAGCAGCTGCTGG		47	3	0.06	56	0	0		358		7	0	0				A	42861670	C	A	42861670	3	1	98	1	0	0	0	0	1	0	0	0	9512	796	28	2	4850	2	MEGF8	19	42861670	Missense_Mutation	SNP	C	TCGA-VF-A8AB-01A-31D-A435-10	23090879	42861670	16267313	70	7265											
ATF5	22809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	50434258	50434258	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggagccctggagggcgggCttccagtggggggagagccc	22	10	0	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_012068	exon3	c.C151T	p.L51F	GGCGGGCTTCCAG		66	14	0.21	86	0	0				220	9	0.04				T	50434258	C	T	50434258	3	4	98	1	0	0	0	0	1	0	0	0	1082	797	28	2	153	2	ATF5	19	50434258	Missense_Mutation	SNP	C	TCGA-VF-A8AB-01A-31D-A435-10	7572588	50434258	8694725	71	7266											
TRIM28	10155	mdanderson.org	37	chr19	59059871	59059871	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcaagattgtggcagagcGtcctggcactaactcaacag	12	10	1	2	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	TRIM28,NS,carcinoma,+1,1	TRIM28	NM_005762	exon9	c.G1235A	p.R412H	CAGAGCGTCCTGG		57	3	0.05	60	0	0		46	1	1373	0	0				A	59059871	G	A	59059871	3	1	98	1	0	0	0	0	1	0	0	0	16562	1145	40	1	1269	1	TRIM28	19	59059871	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	8625613	59059871	69112	72	7267											
DIDO1	11083	mdanderson.org	37	chr20	61525294	61525294	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agggggacaggtcttccagcGgggagggctcgggatggcca	20	9	1	0	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	DIDO1	NM_033081	exon12	c.C2825A	p.P942Q	TCCAGCGGGGAGG		65	3	0.05	45	0	0		321		12	0	0				T	61525294	G	T	61525294	3	4	98	1	0	0	0	0	1	0	0	0	4550	1116	39	1	3946	1	DIDO1	20	61525294	Missense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10		61525294	1500226	73	7268											
MICAL3	57553	broad.mit.edu	37	chr22	18273827	18273832	+	In_Frame_Del	DEL	GCTCCC	GCTCCC	-													ctgccggtcttccagctccaGctcccgggcactgaggaggc					novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	GCTCCC	GCTCCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	MICAL3	NM_015241	exon31	c.5756_5761del	p.1919_1921del	GCTCCAGCTCCCG		59	9	0.15	46	0	0		53		21	0	0				-	18273832	GCTCCC	-	18273827	7	5	98	1	0	1	0	1	0	0	0	0	9618	962	34	0	255	0	MICAL3	22	18273827	In_Frame_Del	DEL	GCTCCC	TCGA-VF-A8AB-01A-31D-A435-10		18273827	33030739	74	7269											
ZNF74	7625	mdanderson.org	37	chr22	20760070	20760070	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccggggagggcgagttcgtGtgcggcgagtgcgggaaggc	23	8	0	0	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	ZNF74	NM_001256524	exon6	c.G747T	p.V249V	GTTCGTGTGCGGC		45	3	0.07	37	0	0		54		20	0	0				T	20760070	G	T	20760070	2	4	98	1	0	0	0	0	0	0	0	1	18176	1364	48	3		3	ZNF74	22	20760070	Silent	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	2486243	20760070	30544496	75	7270											
ZNF74	7625	mdanderson.org	37	chr22	20760418	20760418	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctaccggtgcggcgagtgCggcaaggccttcaaccagcg	14	15	1	0	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	ZNF74	NM_001256524	exon6	c.C1095T	p.C365C	CGAGTGCGGCAAG		66	5	0.08	59	0	0		54		25	0	0				T	20760418	C	T	20760418	2	4	98	1	0	0	0	0	0	0	0	1	18176	776	27	1		1	ZNF74	22	20760418	Silent	SNP	C	TCGA-VF-A8AB-01A-31D-A435-10	348	20760418	30544148	76	7271											
AIFM3	150209	mdanderson.org	37	chr22	21334370	21334370	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccattgtgtccaaggtcgctGaggtgctggcctcaggccgt	14	12	1	1	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	AIFM3	NM_001146288	exon19	c.G1732T	p.E578X	GTCGCTGAGGTGC		41	3	0.07	31	0	0		49		9	0	0				T	21334370	G	T	21334370	4	4	98	1	0	0	0	0	0	1	0	0	425	1291	45	3	1802	3	AIFM3	22	21334370	Nonsense_Mutation	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10	573952	21334370	29970196	77	7272											
FAM83F	113828	hgsc.bcm.edu	37	chr22	40391306	40391307	+	In_Frame_Ins	INS	-	-	CAAGGC													gccaacgcccggggcaagagINScaaggccaaggccaaggccc					novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	FAM83F	NM_138435	exon1	c.260_261insCAAGGC	p.S87delinsSKA	GCAAGAGCAAGGC		20	10	0.5	9	0	0		29		2	0	0				CAAGGC	40391307	-	CAAGGC	40391306	7	5	98	1	0	1	1	0	0	0	0	0	5669	971	34	0	262	0	FAM83F	22	40391306	In_Frame_Ins	INS	-	TCGA-VF-A8AB-01A-31D-A435-10	19056936	40391306	10913260	78	7273											
HAUS7	55559	mdanderson.org	37	chrX	152734605	152734605	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaaactgatgcattaccGggtacacatccactctagga	9	10	1	2	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	HAUS7	NM_017518	exon2	c.C253A	p.R85R	ATTACCGGGTACA		57	3	0.05	48	0	0		44		106	0	0				T	152734605	G	T	152734605	2	4	98	1	0	0	0	0	0	0	0	1	7011	1130	39	1		1	HAUS7	23	152734605	Silent	SNP	G	TCGA-VF-A8AB-01A-31D-A435-10		152734605	2535955	79	7274											
SLC25A34	284723	mdanderson.org	37	chr1	16062988	16062988	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcccggaggccatggagaCggtgcccccagcagtggacc	16	14	0	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_207348	exon1	c.C8T	p.T3M	TGGAGACGGTGCC		22	3	0.14	30	0	0				0	0					T	16062988	C	T	16062988	3	4	99	1	0	0	0	0	1	0	0	0	14552	536	19	1	10	1	SLC25A34	1	16062988	Missense_Mutation	SNP	C	TCGA-VF-A8AC-01A-11D-A435-10		16062988	233187633	1	7275											
FAM43B	163933	mdanderson.org	37	chr1	20880251	20880251	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggcgccgcgcctcagcaGcatccaggaggaggacgagg	18	13	1	0	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_207334	exon1	c.G785T	p.S262I	TCAGCAGCATCCA		12	3	0.25	9	0	0				0	0					T	20880251	G	T	20880251	3	4	99	1	0	0	0	0	1	0	0	0	5598	971	34	2	787	2	FAM43B	1	20880251	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	4817263	20880251	228370370	2	7276											
KIF17	57576	mdanderson.org	37	chr1	20996952	20996952	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgctgcagaggttttgcGggctggtttgttctgtggcc	16	8	2	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_020816	exon13	c.C2755A	p.R919S	TTTTGCGGGCTGG		56	3	0.05	60	0	0				40	0	0				T	20996952	G	T	20996952	3	4	99	1	0	0	0	0	1	0	0	0	8320	1116	39	1	346	1	KIF17	1	20996952	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	116701	20996952	228253669	3	7277											
ZBTB8OS	339487	broad.mit.edu	37	chr1	33099658	33099658	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgcttcctccagagtatcTccccatgcgtgtaacctaaa	6	13	1	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	ZBTB8OS	NM_178547	exon3	c.A174G	p.G58G	AGTATCTCCCCAT		171	3	0.02	177	0	0		9		216	0	0				C	33099658	T	C	33099658	2	2	99	1	0	0	0	0	0	0	0	1	17615	1538	54	4		4	ZBTB8OS	1	33099658	Silent	SNP	T	TCGA-VF-A8AC-01A-11D-A435-10	12102706	33099658	216150963	4	7278											
CHI3L1	1116	bcgsc.ca	37	chr1	203148983	203148983	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaggattctatggactgtgGctccgcggaggaagtcacag	15	9	2	0	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	CHI3L1	NM_001276	exon9	c.C917A	p.A306D	ACTGTGGCTCCGC		86	5	0.06	88	1	0.0113636364		51		1	0	0				T	203148983	G	T	203148983	3	4	99	1	0	0	0	0	1	0	0	0	3362	1203	42	2	242	2	CHI3L1	1	203148983	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	170049325	203148983	46101638	5	7279											
TAF5L	27097	broad.mit.edu	37	chr1	229737976	229737976	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tatcacaagccaaatggatgCgggacacgtctacttggtgg	12	9	2	0	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	TAF5L	NM_001025247	exon4	c.G938A	p.R313H	TGGATGCGGGACA		222	5	0.02	194	1	0.0051546392		76		46	0	0				T	229737976	C	T	229737976	3	4	99	1	0	0	0	0	1	0	0	0	15585	768	27	1	845	1	TAF5L	1	229737976	Missense_Mutation	SNP	C	TCGA-VF-A8AC-01A-11D-A435-10	26588993	229737976	19512645	6	7280											
EDARADD	128178	mdanderson.org	37	chr1	236631562	236631562	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tggctttccagatagcactgGagatcctcttccaggtaaat	9	10	1	2	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_145861	exon5	c.G251T	p.G84V	GCACTGGAGATCC		93	5	0.05	82	0	0				0	0					T	236631562	G	T	236631562	3	4	99	1	0	0	0	0	1	0	0	0	4932	1174	41	3	304	3	EDARADD	1	236631562	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	6893586	236631562	12619059	7	7281											
HTRA2	27429	broad.mit.edu	37	chr2	74757212	74757212	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggggggcattcgctgggggAggagaccccgtttgacccct	17	11	0	2	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	HTRA2	NM_013247	exon1	c.A79G	p.R27G	TGGGGGAGGAGAC		130	11	0.08	80	5	0.0625		22		12	0	0				G	74757212	A	G	74757212	3	3	99	1	0	0	0	0	1	0	0	0	7497	295	11	4	81	4	HTRA2	2	74757212	Missense_Mutation	SNP	A	TCGA-VF-A8AC-01A-11D-A435-10		74757212	168442161	8	7282											
HK2	3099	broad.mit.edu	37	chr2	75105841	75105841	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatggcatccggaaggcccGtgaggtcctgatgcggttgg	18	9	0	2	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	HK2	NM_000189	exon9	c.G1058A	p.R353H	AGGCCCGTGAGGT		381	4	0.01	298	0	0		85		4	0	0				A	75105841	G	A	75105841	3	1	99	1	0	0	0	0	1	0	0	0	7231	1145	40	1	1092	1	HK2	2	75105841	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	348629	75105841	168093532	9	7283											
SAP130	79595	mdanderson.org	37	chr2	128770644	128770644	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgctgtactgctggctgaGcagtagcagcatttggcagc	14	9	0	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001145928	exon6	c.C782A	p.A261D	GGCTGAGCAGTAG		81	5	0.06	71	0	0				51	0	0				T	128770644	G	T	128770644	3	4	99	1	0	0	0	0	1	0	0	0	13882	971	34	2	2533	2	SAP130	2	128770644	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	53664803	128770644	114428729	10	7284											
TANK	10010	broad.mit.edu	37	chr2	162087512	162087512	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtgcctatacagtgtaCggataaaacagataaacaag	8	8	1	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	TANK	NM_004180	exon7	c.C551T	p.T184M	AGTGTACGGATAA		240	6	0.03	285	0	0		35		40	0	0				T	162087512	C	T	162087512	3	4	99	1	0	0	0	0	1	0	0	0	15602	536	19	1	606	1	TANK	2	162087512	Missense_Mutation	SNP	C	TCGA-VF-A8AC-01A-11D-A435-10	33316868	162087512	81111861	11	7285											
OBSL1	23363	mdanderson.org	37	chr2	220430190	220430190	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acccgctctgaggttgtgaaGgtcaacgacaccctgtcctg	11	13	2	2	rs199883250		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001173431	exon6	c.C2181A	p.T727T	TGTGAAGGTCAAC		32	3	0.09	45	0	0	0.001			87	0	0				T	220430190	G	T	220430190	2	4	99	1	0	0	0	0	0	0	0	1	10860	987	35	3		3	OBSL1	2	220430190	Silent	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	58342678	220430190	22769183	12	7286											
HESX1	8820	broad.mit.edu	37	chr3	57232488	57232488	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atatcgataccaggatagcaGtttactctaaagacattttc	6	8	1	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	HESX1	NM_003865	exon3	c.C390A	p.N130K	ATAGCAGTTTACT		253	6	0.02	256	0	0		26		9	0	0				T	57232488	G	T	57232488	3	4	99	1	0	0	0	0	1	0	0	0	7112	1020	36	3	175	3	HESX1	3	57232488	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10		57232488	140789942	13	7287											
ACAD11	84129	mdanderson.org	37	chr3	132277850	132277850	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtcttttggcttggtcccGcagctccattgttgcgattg	11	11	1	0	rs200376706	by1000genomes	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	ACAD11,NS,carcinoma,0,1	ACAD11	NM_032169	exon20	c.C2308T	p.R770W	GGTCCCGCAGCTC		112	6	0.05	111	0	0	0	0	1	211	0	0				A	132277850	G	A	132277850	3	1	99	1	0	0	0	0	1	0	0	0	109	1086	38	1	38	1	ACAD11	3	132277850	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	75045362	132277850	65744580	14	7288											
CRMP1	1400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	5837737	5837737	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcaatccgccctttccttgGgtacaggttaaagatcttgg	11	10	1	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001014809	exon11	c.C1528T	p.P510S	TCCTTGGGTACAG		142	24	0.17	154	0	0				13	2	0.15				A	5837737	G	A	5837737	3	1	99	1	0	0	0	0	1	0	0	0	3913	1232	43	3	548	3	CRMP1	4	5837737	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10		5837737	185316539	15	7289											
DNAH5	1767	broad.mit.edu	37	chr5	13830171	13830171	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaaattcagggttcatagtCacattatctccatcagtaaa	5	10	5	0	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	DNAH5	NM_001369	exon37	c.G6213C	p.V2071V	CATAGTCACATTA		281	4	0.01	326	1	0.0030674847		868		0	0					G	13830171	C	G	13830171	2	3	99	1	0	0	0	0	0	0	0	1	4632	813	29	5		5	DNAH5	5	13830171	Silent	SNP	C	TCGA-VF-A8AC-01A-11D-A435-10		13830171	167085089	16	7290											
BASP1	10409	mdanderson.org	37	chr5	17275706	17275706	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagctgctgaggccgccgcGgccccggccgagagcgcggc	17	16	0	2	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_006317	exon2	c.G381T	p.A127A	CGCCGCGGCCCCG		20	2	0.1	20	0	0				4	0	0				T	17275706	G	T	17275706	2	4	99	1	0	0	0	0	0	0	0	1	1315	1103	39	1		1	BASP1	5	17275706	Silent	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	3445535	17275706	163639554	17	7291											
MEGF10	84466	mdanderson.org	37	chr5	126792994	126792994	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtagcagcagcaacagcaGcagcagcagtgaatgacacc	12	11	0	2	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001256545	exon25	c.G3407T	p.S1136I	ACAGCAGCAGCAG		39	3	0.08	28	0	0				0	0					T	126792994	G	T	126792994	3	4	99	1	0	0	0	0	1	0	0	0	9509	971	34	2	3501	2	MEGF10	5	126792994	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	109517288	126792994	54122266	18	7292											
PCDHA13	56136	mdanderson.org	37	chr5	140263827	140263827	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaccacggtgagcccgcGctgacggccacggcaacggt	15	14	0	2	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_031865	exon1	c.G1974T	p.A658A	GCCCGCGCTGACG		47	3	0.06	40	0	0				0	0					T	140263827	G	T	140263827	2	4	99	1	0	0	0	0	0	0	0	1	11569	1074	38	1		1	PCDHA13	5	140263827	Silent	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	13470833	140263827	40651433	19	7293											
FAF2	23197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	175875462	175875462	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcagacagagaagctgctGcagtttcaggtagcagcgag	15	8	1	2	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_014613	exon1	c.G54A	p.L18L	GCTGCTGCAGTTT		68	17	0.25	77	0	0				13	7	0.54				A	175875462	G	A	175875462	2	1	99	1	0	0	0	0	0	0	0	1	5401	1306	46	2		2	FAF2	5	175875462	Silent	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	35611635	175875462	5039798	20	7294											
BTN2A2	10385	hgsc.bcm.edu	37	chr6	26384092	26384092	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acttctccctgccagcctccCtcctcctcctcctgctcctc	3	24	1	0	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	BTN2A2_ENST00000432533,bladder,carcinoma,-1,2	BTN2A2_ENST00000432533	NM_181531	exon2	c.C43T	p.L15F	GCCTCCCTCCTCC		120	7	0.06	87	2	0.0229885057		-1	2	16	0	0				T	26384092	C	T	26384092	3	4	99	1	0	0	0	0	1	0	0	0	1564	681	24	3	45	3	BTN2A2	6	26384092	Missense_Mutation	SNP	C	TCGA-VF-A8AC-01A-11D-A435-10		26384092	144730975	21	7295											
MOCS1	4337	mdanderson.org	37	chr6	39881102	39881102	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaagcgcacatccagggggAggccctcagtcaaggccgca	14	13	2	1	rs7762875	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001075098	exon6	c.T716C	p.L239P	AGGGGGAGGCCCT		93	5	0.05	107	1	0.0093457944				15	0	0				G	39881102	A	G	39881102	3	3	99	1	0	0	0	0	1	0	0	0	9738	304	11	4	461	4	MOCS1	6	39881102	Missense_Mutation	SNP	A	TCGA-VF-A8AC-01A-11D-A435-10	13497010	39881102	131233965	22	7296											
TTK	7272	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	80747723	80747723	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgccaccagaagcaatcaaaGatatgtcttcctccagagag	8	11	2	3	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	TTK,NS,NS,0,1	TTK	NM_003318	exon18	c.G2089A	p.D697N	ATCAAAGATATGT		218	19	0.09	225	2	0.0088888889		0	1	230	66	0.29				A	80747723	G	A	80747723	3	1	99	1	0	0	0	0	1	0	0	0	16781	942	33	3	2155	3	TTK	6	80747723	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	40866621	80747723	90367344	23	7297											
CUX1	1523	broad.mit.edu	37	chr7	101882800	101882800	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	acccgtcaccaaaaaccatcGaagacctcgccacccagctc	5	19	1	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	CUX1	NM_001202543	exon23	c.G3856T	p.E1286X	ACCATCGAAGACC		244	7	0.03	168	0	0		253		21	0	0				T	101882800	G	T	101882800	4	4	99	1	0	0	0	0	0	1	0	0	4087	1059	37	1	3980	1	CUX1	7	101882800	Nonsense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10		101882800	57255863	24	7298											
KLHDC10	23008	mdanderson.org	37	chr7	129710491	129710491	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgttagcgggtcatgtcggCcgcccagggctgggacagga	17	11	1	0	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_014997	exon1	c.C8T	p.A3V	TGTCGGCCGCCCA		33	3	0.09	10	0	0				0	0					T	129710491	C	T	129710491	3	4	99	1	0	0	0	0	1	0	0	0	8397	739	26	2	10	2	KLHDC10	7	129710491	Missense_Mutation	SNP	C	TCGA-VF-A8AC-01A-11D-A435-10	27827691	129710491	29428172	25	7299											
MTFR1	9650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	66605961	66605961	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgatgttggatgggtagCcaaagaagaaggagagtgtt	16	3	0	4	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_014637	exon4	c.C248A	p.A83D	GGGTAGCCAAAGA		204	52	0.25	135	0	0				125	45	0.36				A	66605961	C	A	66605961	3	1	99	1	0	0	0	0	1	0	0	0	9972	739	26	2	258	2	MTFR1	8	66605961	Missense_Mutation	SNP	C	TCGA-VF-A8AC-01A-11D-A435-10		66605961	79758061	26	7300											
ESRP1	54845	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	95655639	95655639	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctgcatcctgaggcttccAagaaggtaagagtgctggct	12	10	0	3	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	ESRP1	NM_001122827	exon3	c.A370G	p.K124E	GCTTCCAAGAAGG		74	6	0.08	56	0	0		148		28	6	0.21				G	95655639	A	G	95655639	3	3	99	1	0	0	0	0	1	0	0	0	5286	131	5	4	380	4	ESRP1	8	95655639	Missense_Mutation	SNP	A	TCGA-VF-A8AC-01A-11D-A435-10	29049678	95655639	50708383	27	7301											
GDF6	392255	broad.mit.edu	37	chr8	97157410	97157411	+	Frame_Shift_Del	DEL	CG	CG	-													gcggcggttgctggggtcccCgcgcgcgcgcctcggcctcc					novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	CG	CG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	GDF6	NM_001001557	exon2	c.748_749del	p.250_250del	GGTCCCCGCGCGC		6	3	0.5	8	0	0		57		0	0					-	97157411	CG	-	97157410	7	5	99	1	0	1	0	1	0	0	0	0	6358	652	23	0	622	0	GDF6	8	97157410	Frame_Shift_Del	DEL	CG	TCGA-VF-A8AC-01A-11D-A435-10	1501771	97157410	49206612	28	7302											
KCNS2	3788	mdanderson.org	37	chr8	99441319	99441319	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtggtgggctaccgtcaGtatgaccacagtggggtacg	16	9	1	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_020697	exon2	c.G1112T	p.S371I	CCGTCAGTATGAC		89	4	0.04	63	0	0				0	0					T	99441319	G	T	99441319	3	4	99	1	0	0	0	0	1	0	0	0	8132	1029	36	3	1114	3	KCNS2	8	99441319	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	2283909	99441319	46922703	29	7303											
SHB	6461	mdanderson.org	37	chr9	38068265	38068265	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggacgaggccgagaaggcGcgctggaccccgcctggctc	17	15	0	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_003028	exon1	c.C378A	p.R126R	GAAGGCGCGCTGG		18	2	0.11	12	0	0				1	0	0				T	38068265	G	T	38068265	2	4	99	1	0	0	0	0	0	0	0	1	14322	1074	38	1		1	SHB	9	38068265	Silent	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10		38068265	103145166	30	7304											
TMC1	117531	broad.mit.edu	37	chr9	75420368	75420368	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcattggggactttctaaGggcatgttttgtgaggtttt	12	6	2	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	TMC1	NM_138691	exon18	c.G1637T	p.R546M	TTCTAAGGGCATG		146	5	0.03	134	0	0		87		4	0	0				T	75420368	G	T	75420368	3	4	99	1	0	0	0	0	1	0	0	0	16043	1000	35	3	1691	3	TMC1	9	75420368	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	37352103	75420368	65793063	31	7305											
SYK	6850	broad.mit.edu	37	chr9	93637110	93637110	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taattttggaactgtgaaaaAgggctactaccaaatgaaaa	8	5	0	2	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	SYK,rectum,carcinoma,-1,1	SYK	NM_003177	exon9	c.A1160G	p.K387R	TGAAAAAGGGCTA		103	4	0.04	96	1	0.0104166667		132	1	14	0	0				G	93637110	A	G	93637110	3	3	99	1	0	0	0	0	1	0	0	0	15494	72	3	4	1190	4	SYK	9	93637110	Missense_Mutation	SNP	A	TCGA-VF-A8AC-01A-11D-A435-10	18216742	93637110	47576321	32	7306											
LAMC3	10319	mdanderson.org	37	chr9	133884953	133884953	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtgcagtaccccacctcgGtcaacatcaccctccgccta	7	19	2	0	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_006059	exon1	c.G352T	p.V118F	ACCTCGGTCAACA		47	4	0.09	66	0	0				7	0	0				T	133884953	G	T	133884953	3	4	99	1	0	0	0	0	1	0	0	0	8654	1261	44	3	354	3	LAMC3	9	133884953	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	40247843	133884953	7328478	33	7307											
EPC1	80314	broad.mit.edu	37	chr10	32575641	32575641	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttccaccgcgcccaacccGtcttcgtgcaaatccaatac	5	19	1	0	rs143299306	alternate_allele	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	EPC1	NM_001272004	exon9	c.C1372A	p.R458R	CAACCCGTCTTCG		120	4	0.03	121	1	0.0082644628		74		28	0	0				T	32575641	G	T	32575641	2	4	99	1	0	0	0	0	0	0	0	1	5188	1144	40	1		1	EPC1	10	32575641	Silent	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10		32575641	102959106	34	7308											
CCAR1	55749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	70525822	70525822	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	acagattagaggataataaaGaacattcatttgaggtaatg	9	3	1	4	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	CCAR1,NS,carcinoma,0,1	CCAR1	NM_018237	exon17	c.G2284C	p.E762Q	AATAAAGAACATT		86	7	0.08	89	0	0		0	1	128	37	0.29				C	70525822	G	C	70525822	3	2	99	1	0	0	0	0	1	0	0	0	2748	943	33	5	2346	5	CCAR1	10	70525822	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	37950181	70525822	65008925	35	7309											
KRTAP5-5	439915	mdanderson.org	37	chr11	1651203	1651203	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggctccggctgtggaggcTgtgggggctgtggctccggc	21	10	0	0	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001001480	exon1	c.T133C	p.C45R	GGAGGCTGTGGGG		51	6	0.12	50	0	0				0	0					C	1651203	T	C	1651203	3	2	99	1	0	0	0	0	1	0	0	0	8602	1580	55	4	135	4	KRTAP5-5	11	1651203	Missense_Mutation	SNP	T	TCGA-VF-A8AC-01A-11D-A435-10		1651203	133355313	36	7310											
DEPDC7	91614	broad.mit.edu	37	chr11	33047234	33047234	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagctcagaagccatttggaGccacgtatgtatggagcagc	12	9	1	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	DEPDC7	NM_001077242	exon2	c.G103T	p.A35S	TTTGGAGCCACGT		182	5	0.03	184	0	0		94		30	0	0				T	33047234	G	T	33047234	3	4	99	1	0	0	0	0	1	0	0	0	4472	971	34	2	159	2	DEPDC7	11	33047234	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	31396031	33047234	101959282	37	7311											
SLC35C1	55343	mdanderson.org	37	chr11	45827629	45827629	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtgcaaaggcctcagcGctctggccgcctgctgccct	12	16	2	0	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_018389	exon1	c.G277T	p.A93S	CTCAGCGCTCTGG		52	3	0.06	36	0	0				13	0	0				T	45827629	G	T	45827629	3	4	99	1	0	0	0	0	1	0	0	0	14633	1087	38	1	279	1	SLC35C1	11	45827629	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	12780395	45827629	89178887	38	7312											
C11orf82	220042	hgsc.bcm.edu;mdanderson.org	37	chr11	82639955	82639955	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgcttagatacattttttGgtcttactgccactggtttg	9	7	1	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_145018	exon4	c.G250T	p.G84C	TTTTTTGGTCTTA		82	4	0.05	81	0	0				13	0	0				T	82639955	G	T	82639955	3	4	99	1	0	0	0	0	1	0	0	0	1670	1348	47	3	256	3	C11orf82	11	82639955	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	36812326	82639955	52366561	39	7313											
PGR	5241	mdanderson.org	37	chr11	100998763	100998763	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccggggtggacgaggcacAgggtgaactccgcggcgggg	21	10	0	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_000926	exon1	c.T1039C	p.C347R	AGGCACAGGGTGA		30	4	0.13	25	0	0				0	0					G	100998763	A	G	100998763	3	3	99	1	0	0	0	0	1	0	0	0	11852	188	7	4	1794	4	PGR	11	100998763	Missense_Mutation	SNP	A	TCGA-VF-A8AC-01A-11D-A435-10	18358808	100998763	34007753	40	7314											
DDX10	1662	broad.mit.edu	37	chr11	108712092	108712092	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgccatcaaggatgctgaGgaagatgatgacacaggtgg	14	7	2	4	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	DDX10	NM_004398	exon15	c.G2136T	p.E712D	TGCTGAGGAAGAT		239	6	0.03	227	0	0		70		78	0	0				T	108712092	G	T	108712092	3	4	99	1	0	0	0	0	1	0	0	0	4365	991	35	3	2194	3	DDX10	11	108712092	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	7713329	108712092	26294424	41	7315											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530	bycluster	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	KRAS_ENST00000256078,NS,adenocarcinoma,+1,25136	KRAS_ENST00000256078	NM_004985	exon2	c.G34C	p.G12R	CGCCACCAGCTCC		336	122	0.36	210	0	0		1	25136	22	13	0.59				G	25398285	C	G	25398285	3	3	99	1	0	0	0	0	1	0	0	0	8480	594	21	5	672	5	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-VF-A8AC-01A-11D-A435-10		25398285	108453610	42	7316											
TIMELESS	8914	broad.mit.edu	37	chr12	56827600	56827600	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgtcctggtggtgctgggTgaggatgggcagaaggtcgc	19	7	0	2	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	TIMELESS	NM_003920	exon3	c.A208C	p.T70P	GCTGGGTGAGGAT		78	22	0.28	62	12	0.1935483871		107		39	1	0.03				G	56827600	T	G	56827600	3	3	99	1	0	0	0	0	1	0	0	0	15963	1696	59	4	3526	4	TIMELESS	12	56827600	Missense_Mutation	SNP	T	TCGA-VF-A8AC-01A-11D-A435-10	31429315	56827600	77024295	43	7317											
NDUFA4L2	56901	mdanderson.org	37	chr12	57629360	57629360	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggcttagaagtctggccGgtccttcttcagcttcttat	9	12	4	1	rs139105980	alternate_allele	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_020142	exon5	c.C250A	p.R84R	CTGGCCGGTCCTT		55	3	0.05	48	0	0				25	0	0				T	57629360	G	T	57629360	2	4	99	1	0	0	0	0	0	0	0	1	10313	1115	39	1		1	NDUFA4L2	12	57629360	Silent	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	801760	57629360	76222535	44	7318											
ACAD10	80724	mdanderson.org	37	chr12	112182447	112182447	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttctttgattctgcttagGgcaagcaagctccacatatg	8	9	2	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001136538	exon14	c.G1808T	p.G603V	GCTTAGGGCAAGC		47	3	0.06	29	0	0				20	0	0				T	112182447	G	T	112182447	3	4	99	1	0	0	0	0	1	0	0	0	108	1246	43	3	1858	3	ACAD10	12	112182447	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	54553087	112182447	21669448	45	7319											
RASAL1	8437	mdanderson.org	37	chr12	113565955	113565955	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtactcctccccccagaaggGgcccaggctcctccagacag	10	18	0	2	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001193520	exon4	c.C151A	p.P51T	AGAAGGGGCCCAG		43	3	0.07	35	0	0				1	0	0				T	113565955	G	T	113565955	3	4	99	1	0	0	0	0	1	0	0	0	13114	1232	43	3	2339	3	RASAL1	12	113565955	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	1383508	113565955	20285940	46	7320											
NCOR2	9612	mdanderson.org	37	chr12	124831293	124831293	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttgtaggcctcggtcagGtcccgtgagggcggtggggg	20	9	2	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_006312	exon33	c.C4176A	p.D1392E	GGTCAGGTCCCGT		39	3	0.08	45	0	0				11	0	0				T	124831293	G	T	124831293	3	4	99	1	0	0	0	0	1	0	0	0	10282	1252	44	3	3436	3	NCOR2	12	124831293	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	11265338	124831293	9020602	47	7321											
METTL3	56339	mdanderson.org	37	chr14	21971825	21971825	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	accgtggagatggcaagacaGatggacacagcatcagtggg	15	8	1	3	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_019852	exon2	c.C300A	p.I100I	AAGACAGATGGAC		118	5	0.04	107	0	0				61	0	0				T	21971825	G	T	21971825	2	4	99	1	0	0	0	0	0	0	0	1	9550	932	33	3		3	METTL3	14	21971825	Silent	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10		21971825	85377715	48	7322											
DHRS4L2	317749	mdanderson.org	37	chr14	24458223	24458223	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cggtgcggatggccagctccAggatgacccgccgggacccg	16	15	0	1	rs139671977	bycluster;byfrequency	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	DHRS4L2,trunk,malignant_melanoma,0,1	DHRS4L2	NM_198083	exon1	c.A67G	p.R23G	AGCTCCAGGATGA		43	5	0.12	47	1	0.0212765957	0	0	1	9	0	0				G	24458223	A	G	24458223	3	3	99	1	0	0	0	0	1	0	0	0	4522	179	7	4	69	4	DHRS4L2	14	24458223	Missense_Mutation	SNP	A	TCGA-VF-A8AC-01A-11D-A435-10	2486398	24458223	82891317	49	7323											
DDHD1	0	broad.mit.edu	37	chr14	53522376	53522376	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaatacataagagaaattAcctaatatgcttgctttgcc	7	7	0	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	DDHD1	NM_001160147	exon12	c.2266+2T>C	.	GAAATTACCTAAT		68	8	0.12	57	0	0		202		0	0					G	53522376	A	G	53522376	5	3	99	1	0	0	0	0	0	0	1	0	4349	405	14	4	471	4	DDHD1	14	53522376	Splice_Site	SNP	A	TCGA-VF-A8AC-01A-11D-A435-10	29064153	53522376	53827164	50	7324											
YLPM1	56252	hgsc.bcm.edu;mdanderson.org	37	chr14	75265422	75265422	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accaccccgaagagctgggaGcagggagagaggaccacctc	14	13	0	2	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_019589	exon5	c.G3422T	p.S1141I	CTGGGAGCAGGGA		123	5	0.04	101	0	0				23	0	0				T	75265422	G	T	75265422	3	4	99	1	0	0	0	0	1	0	0	0	17545	971	34	2	3440	2	YLPM1	14	75265422	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	21743046	75265422	32084118	51	7325											
NRXN3	9369	hgsc.bcm.edu	37	chr14	79746680	79746680	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagccctcctcgccggccgGcctggacgcttgggatctgg	16	15	1	0	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_138970	exon1	c.G46T	p.A16S	CGGCCGGCCTGGA		84	4	0.05	66	0	0				0	0					T	79746680	G	T	79746680	3	4	99	1	0	0	0	0	1	0	0	0	10714	1203	42	2	2231	2	NRXN3	14	79746680	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	4481258	79746680	27602860	52	7326											
KIF7	374654	mdanderson.org	37	chr15	90174728	90174728	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	catggggccgcagggtacctCgggggacagcagactcccct	15	14	0	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_198525	exon15	c.G3109T	p.E1037X	GTACCTCGGGGGA		33	3	0.09	45	1	0.0222222222				50	0	0				A	90174728	C	A	90174728	4	1	99	1	0	0	0	0	0	1	0	0	8350	893	31	1	942	1	KIF7	15	90174728	Nonsense_Mutation	SNP	C	TCGA-VF-A8AC-01A-11D-A435-10		90174728	12356664	53	7327											
HMOX2	3163	hgsc.bcm.edu;mdanderson.org	37	chr16	4555575	4555575	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtagacgagtcagaaaaaaAgaactctggggccctagaaa	12	7	2	4	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	HMOX2,colon,carcinoma,-1,1	HMOX2	NM_001127205	exon2	c.A50G	p.K17R	AAAAAAAGAACTC		44	3	0.07	41	1	0.0243902439		-1	1	159	0	0				G	4555575	A	G	4555575	3	3	99	1	0	0	0	0	1	0	0	0	7284	72	3	4	52	4	HMOX2	16	4555575	Missense_Mutation	SNP	A	TCGA-VF-A8AC-01A-11D-A435-10		4555575	85799178	54	7328											
ARHGAP17	55114	mdanderson.org	37	chr16	24958877	24958877	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtcattttattcacatcGctggtctgagcaagctttgc	10	9	3	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_018054	exon14	c.C1167A	p.S389R	CACATCGCTGGTC		43	3	0.07	53	0	0				33	0	0				T	24958877	G	T	24958877	3	4	99	1	0	0	0	0	1	0	0	0	864	1078	38	1	1506	1	ARHGAP17	16	24958877	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	20403302	24958877	65395876	55	7329											
CES3	23491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	67006271	67006271	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtagattctggaagccCtgtctttttctatgagttcc	8	10	4	2	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_024922	exon11	c.C1304T	p.P435L	GAAGCCCTGTCTT		154	21	0.14	182	0	0				8	2	0.25				T	67006271	C	T	67006271	3	4	99	1	0	0	0	0	1	0	0	0	3293	681	24	3	1346	3	CES3	16	67006271	Missense_Mutation	SNP	C	TCGA-VF-A8AC-01A-11D-A435-10	42047394	67006271	23348482	56	7330											
KIAA0513	9764	mdanderson.org	37	chr16	85101005	85101005	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagaagatcttctctggaGggtaaggggcctgtgtggac	17	6	2	2	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_014732	exon2	c.G328T	p.G110W	TCTGGAGGGTAAG		20	2	0.1	11	0	0				31	0	0				T	85101005	G	T	85101005	3	4	99	1	0	0	0	0	1	0	0	0	8222	1014	35	3	330	3	KIAA0513	16	85101005	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	18094734	85101005	5253748	57	7331											
CCDC144B	0	broad.mit.edu	37	chr17	18498258	18498258	+	RNA	DEL	T	T	-													acagaagtggtatttctccaTtttttttgtatgagcaaaaa					novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	CCDC144B	.	.	.	.	TCTCCATTTTTTT		320	8	0.03	274	0	0		106		0	0					-	18498258	T	-	18498258	6	5	99	0	1	1	0	1	0	0	0	0	2796	1508	52	0		0	CCDC144B	17	18498258	RNA	DEL	T	TCGA-VF-A8AC-01A-11D-A435-10		18498258	62696952	58	7332											
GRB7	2886	mdanderson.org	37	chr17	37903138	37903138	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgccattgctgcacgcgGgtggccctctgaccaggccg	14	16	1	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001242442	exon15	c.G1656T	p.R552R	CACGCGGGTGGCC		17	3	0.18	18	0	0				97	0	0				T	37903138	G	T	37903138	2	4	99	1	0	0	0	0	0	0	0	1	6799	1219	43	3		3	GRB7	17	37903138	Silent	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	19404880	37903138	43292072	59	7333											
IGFBP4	3487	mdanderson.org	37	chr17	38600240	38600240	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgctgctacccgccccgaGgggtggagaagcccctgcac	14	16	0	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001552	exon1	c.G253T	p.G85W	CCCCGAGGGGTGG		11	2	0.18	17	0	0				159	0	0				T	38600240	G	T	38600240	3	4	99	1	0	0	0	0	1	0	0	0	7624	1000	35	3	255	3	IGFBP4	17	38600240	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	697102	38600240	42594970	60	7334											
PHOSPHO1	162466	mdanderson.org	37	chr17	47301674	47301674	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtttcccagggcaccacGctggcgcggaacgagctggg	16	14	0	0	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001143804	exon3	c.C813A	p.S271R	CACCACGCTGGCG		18	2	0.11	25	0	0				1	0	0				T	47301674	G	T	47301674	3	4	99	1	0	0	0	0	1	0	0	0	11903	1078	38	1	69	1	PHOSPHO1	17	47301674	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	8701434	47301674	33893536	61	7335											
SLC39A11	201266	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	70645032	70645032	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cgtagggcaggatgggctcaGccagcaccacggcaaaggca	15	12	1	0	rs61736066	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001159770	exon9	c.C860G	p.A287G	GGCTCAGCCAGCA		61	6	0.1	68	0	0				23	5	0.22				C	70645032	G	C	70645032	3	2	99	1	0	0	0	0	1	0	0	0	14668	971	34	5	176	5	SLC39A11	17	70645032	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	23343358	70645032	10550178	62	7336											
MYOM1	8736	mdanderson.org	37	chr18	3083876	3083876	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgctctggattttcagGtctgtagcagacaaagctga	12	8	3	2	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_003803	exon33	c.C4395A	p.D1465E	TTTCAGGTCTGTA		74	4	0.05	49	0	0				0	0					T	3083876	G	T	3083876	3	4	99	1	0	0	0	0	1	0	0	0	10138	1252	44	3	686	3	MYOM1	18	3083876	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10		3083876	74993372	63	7337											
ZFR2	23217	mdanderson.org	37	chr19	3806039	3806039	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgttgcctcttccggaagcGggcccccagccggtgtctgg	14	16	2	0	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_015174	exon19	c.C2728A	p.R910S	GGAAGCGGGCCCC		50	3	0.06	42	0	0				0	0					T	3806039	G	T	3806039	3	4	99	1	0	0	0	0	1	0	0	0	17717	1116	39	1	95	1	ZFR2	19	3806039	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10		3806039	55322944	64	7338											
PNPLA6	10908	mdanderson.org	37	chr19	7615966	7615966	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcttcccgagggcaccttGggtcacatcaaacgccggta	11	13	2	0	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001166111	exon19	c.G2184T	p.L728F	CACCTTGGGTCAC		50	4	0.08	49	0	0				60	0	0				T	7615966	G	T	7615966	3	4	99	1	0	0	0	0	1	0	0	0	12216	1339	47	3	2254	3	PNPLA6	19	7615966	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	3809927	7615966	51513017	65	7339											
MUC16	94025	broad.mit.edu	37	chr19	9008299	9008299	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttgagggttaaggtggtGggtgcagatggcatccactc	16	7	0	2	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	MUC16	NM_024690	exon41	c.C39253A	p.H13085N	GGTGGTGGGTGCA		151	5	0.03	137	1	0.0072992701		4315		0	0					T	9008299	G	T	9008299	3	4	99	1	0	0	0	0	1	0	0	0	10020	1348	47	3	4446	3	MUC16	19	9008299	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	1392333	9008299	50120684	66	7340											
OR7G1	125962	mdanderson.org	37	chr19	9226017	9226017	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagagaagaatcagcaagccCcagaaatggacattcatgag	11	8	2	4	rs2217657	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	OR7G1,NS,carcinoma,0,3	OR7G1	NM_001005192	exon1	c.G423A	p.W141X	CAAGCCCCAGAAA		120	3	0.03	108	0	0		0	3	0	0					T	9226017	C	T	9226017	4	4	99	1	0	0	0	0	0	1	0	0	11268	624	22	3	586	3	OR7G1	19	9226017	Nonsense_Mutation	SNP	C	TCGA-VF-A8AC-01A-11D-A435-10	217718	9226017	49902966	67	7341											
ANKLE1	126549	broad.mit.edu	37	chr19	17397498	17397501	+	Frame_Shift_Del	DEL	TGTT	TGTT	-													tgtgtgtgtgtgtgtgtgtgTgtttgtgtgtgtgtgtgtgt					rs35771129	alternate_allele	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	TGTT	TGTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	ANKLE1	.	.	.	.	TGTGTGTGTTTGT		9	8	0.89	10	0	0		27		4	0	0				-	17397501	TGTT	-	17397498	7	5	99	1	0	1	0	1	0	0	0	0	628	1711	59	0		0	ANKLE1	19	17397498	Frame_Shift_Del	DEL	TGTT	TCGA-VF-A8AC-01A-11D-A435-10	8171481	17397498	41731485	68	7342											
ZNF30	90075	broad.mit.edu;mdanderson.org	37	chr19	35424555	35424555	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attcccgttctaaaccacatGtgatcgccttattggaacaa	6	11	1	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	ZNF30	NM_001099438	exon4	c.G187T	p.V63L	CCACATGTGATCG		128	5	0.04	127	0	0		44		7	0	0				T	35424555	G	T	35424555	3	4	99	1	0	0	0	0	1	0	0	0	17886	1377	48	3	197	3	ZNF30	19	35424555	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	18027057	35424555	23704428	69	7343											
ZNF540	163255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	38103317	38103317	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acacagaagaactcatgcagGtaagaaaccttatgaatgta	8	7	1	4	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	ZNF540,NS,carcinoma,+1,1	ZNF540	NM_152606	exon5	c.G1136C	p.G379A	ATGCAGGTAAGAA		117	14	0.12	83	0	0		1	1	29	9	0.31				C	38103317	G	C	38103317	3	2	99	1	0	0	0	0	1	0	0	0	18031	1261	44	5	1150	5	ZNF540	19	38103317	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	2678762	38103317	21025666	70	7344											
RYR1	6261	broad.mit.edu	37	chr19	38964342	38964342	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggggcaccccgcaggcggGgggagaggcgcagcccgcca	20	15	0	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	RYR1	NM_001042723	exon28	c.G4091T	p.G1364V	AGGCGGGGGGAGA		102	3	0.03	58	0	0		708		0	0					T	38964342	G	T	38964342	3	4	99	1	0	0	0	0	1	0	0	0	13819	1232	43	3	4201	3	RYR1	19	38964342	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	861025	38964342	20164641	71	7345											
GYS1	2997	mdanderson.org	37	chr19	49488754	49488754	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caagtgctgtgcctcgatggCggtgatctgggacacagtag	15	9	1	1	rs372637032		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_002103	exon5	c.G787A	p.A263T	CGATGGCGGTGAT		51	3	0.06	61	0	0				22	0	0				T	49488754	C	T	49488754	3	4	99	1	0	0	0	0	1	0	0	0	6952	768	27	1	1474	1	GYS1	19	49488754	Missense_Mutation	SNP	C	TCGA-VF-A8AC-01A-11D-A435-10	10524412	49488754	9640229	72	7346											
ZNF615	284370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	52496353	52496353	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	catttttgcgcaaagagaatTttccacattcagtacatgca	6	9	1	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001199324	exon7	c.A2009C	p.K670T	GAGAATTTTCCAC		189	24	0.13	154	0	0				12	0	0				G	52496353	T	G	52496353	3	3	99	1	0	0	0	0	1	0	0	0	18096	1841	64	4	223	4	ZNF615	19	52496353	Missense_Mutation	SNP	T	TCGA-VF-A8AC-01A-11D-A435-10	3007599	52496353	6632630	73	7347											
ZNF341	84905	mdanderson.org	37	chr20	32379155	32379155	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttcgcagagccggacgcGgtgctgtccatcgttgtggg	15	13	0	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	ZNF341,bladder,carcinoma,0,1	ZNF341	NM_032819	exon15	c.G2376T	p.A792A	GGACGCGGTGCTG		26	2	0.08	53	0	0		0	1	16	0	0				T	32379155	G	T	32379155	2	4	99	1	0	0	0	0	0	0	0	1	17913	1103	39	1		1	ZNF341	20	32379155	Silent	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10		32379155	30646365	74	7348											
MYH7B	57644	mdanderson.org	37	chr20	33584173	33584173	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaacctgacggaagagatgGctgcgctggacgagtcagtg	16	8	1	3	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_020884	exon29	c.G3094T	p.A1032S	GAGATGGCTGCGC		44	3	0.07	54	0	0				0	0					T	33584173	G	T	33584173	3	4	99	1	0	0	0	0	1	0	0	0	10087	1203	42	2	3200	2	MYH7B	20	33584173	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	1205018	33584173	29441347	75	7349											
NFATC2	4773	bcgsc.ca	37	chr20	50140461	50140461	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatccgagggctcaggcccgAggcccctgctggcttggccg	16	15	1	0	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	NFATC2,NS,carcinoma,+2,1	NFATC2	NM_012340	exon2	c.T319C	p.S107P	GGCCCGAGGCCCC		69	4	0.06	73	0	0		112	1	0	0					G	50140461	A	G	50140461	3	3	99	1	0	0	0	0	1	0	0	0	10408	304	11	4	2542	4	NFATC2	20	50140461	Missense_Mutation	SNP	A	TCGA-VF-A8AC-01A-11D-A435-10	16556288	50140461	12885059	76	7350											
LSS	4047	mdanderson.org	37	chr21	47642609	47642609	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acaatctcttctctgtatccGgctggcagagggatgcgtgc	12	11	2	1	rs11558754	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001145436	exon4	c.C363A	p.A121A	GTATCCGGCTGGC		50	3	0.06	48	0	0				13	0	0				T	47642609	G	T	47642609	2	4	99	1	0	0	0	0	0	0	0	1	9109	1103	39	1		1	LSS	21	47642609	Silent	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10		47642609	487286	77	7351											
CABIN1	23523	mdanderson.org	37	chr22	24445671	24445671	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaaggactctctcagaatGttcctcaaatggtaagtcct	9	10	3	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001201429	exon7	c.G645T	p.M215I	CAGAATGTTCCTC		29	3	0.1	37	0	0				10	0	0				T	24445671	G	T	24445671	3	4	99	1	0	0	0	0	1	0	0	0	2546	1377	48	3	667	3	CABIN1	22	24445671	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10		24445671	26858895	78	7352											
HORMAD2	150280	mdanderson.org	37	chr22	30572077	30572077	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaatgaattttgtgtgcaGtcagcaaagttctgagtgct	11	5	2	3	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_152510	exon11	c.G845T	p.S282I	TGTGCAGTCAGCA		40	3	0.08	54	0	0				0	0					T	30572077	G	T	30572077	3	4	99	1	0	0	0	0	1	0	0	0	7327	1029	36	3	883	3	HORMAD2	22	30572077	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	6126406	30572077	20732489	79	7353											
SLC16A8	23539	mdanderson.org	37	chr22	38477003	38477003	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgaaggcgacgcagaaggCgacgagggcgccgtaggagc	19	11	0	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_013356	exon4	c.G1042A	p.A348T	AGAAGGCGACGAG		13	2	0.15	16	0	0				0	0					T	38477003	C	T	38477003	3	4	99	1	0	0	0	0	1	0	0	0	14468	768	27	1	480	1	SLC16A8	22	38477003	Missense_Mutation	SNP	C	TCGA-VF-A8AC-01A-11D-A435-10	7904926	38477003	12827563	80	7354											
KLHL34	257240	mdanderson.org	37	chrX	21675219	21675219	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgcgccgcagtacgtcggCgggaaccaggccaaagcgga	15	14	0	0	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_153270	exon1	c.G688A	p.A230T	CGTCGGCGGGAAC		39	3	0.08	30	0	0				0	0					T	21675219	C	T	21675219	3	4	99	1	0	0	0	0	1	0	0	0	8429	768	27	1	1250	1	KLHL34	23	21675219	Missense_Mutation	SNP	C	TCGA-VF-A8AC-01A-11D-A435-10		21675219	133595341	81	7355											
PCYT1B	9468	mdanderson.org	37	chrX	24605360	24605360	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaggggaatgcctcacctGcttcctttatgtgcttgtaa	9	11	1	0	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001163265	exon5	c.C563A	p.A188E	TCACCTGCTTCCT		39	3	0.08	29	1	0.0344827586				0	0					T	24605360	G	T	24605360	3	4	99	1	0	0	0	0	1	0	0	0	11657	1319	46	2	599	2	PCYT1B	23	24605360	Missense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	2930141	24605360	130665200	82	7356											
RGAG1	57529	hgsc.bcm.edu;mdanderson.org	37	chrX	109694020	109694020	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caacttcagcctcagaccctGgagggacatccacacagttg	9	14	2	1	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_020769	exon3	c.G175T	p.G59X	GACCCTGGAGGGA		102	5	0.05	94	0	0				1	0	0				T	109694020	G	T	109694020	4	4	99	1	0	0	0	0	0	1	0	0	13325	1349	47	3	177	3	RGAG1	23	109694020	Nonsense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	85088660	109694020	45576540	83	7357											
TKTL1	8277	broad.mit.edu;mdanderson.org	37	chrX	153540936	153540936	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tttgtttcattacaggtattGaggatgcagaaagttggcat	11	4	1	2	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	TKTL1	NM_012253	exon6	c.G676T	p.E226X	GGTATTGAGGATG		80	5	0.06	91	0	0		61		8	0	0				T	153540936	G	T	153540936	4	4	99	1	0	0	0	0	0	1	0	0	15994	1291	45	3	698	3	TKTL1	23	153540936	Nonsense_Mutation	SNP	G	TCGA-VF-A8AC-01A-11D-A435-10	43846916	153540936	1729624	84	7358											
MACF1	23499	broad.mit.edu	37	chr1	39801169	39801169	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcaaccaatgaatgctcGggtgaaaagtaagagagaga	13	6	0	4	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	MACF1	.	.	.	.	ATGCTCGGGTGAA		377	7	0.02	370	1	0.0027027027		909		0	0					T	39801169	G	T	39801169	3	4	100	1	0	0	0	0	1	0	0	0	9189	1116	39	1	9000	1	MACF1	1	39801169	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10		39801169	209449452	1	7359											
CYP4Z1	199974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	47533216	47533216	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	caccccttcttgctgctgatCctcctctgcatgtctctgct	6	17	3	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_178134	exon1	c.C54A	p.I18I	GCTGATCCTCCTC		117	37	0.32	110	0	0				0	0					A	47533216	C	A	47533216	2	1	100	1	0	0	0	0	0	0	0	1	4217	845	30	3		3	CYP4Z1	1	47533216	Silent	SNP	C	TCGA-VF-A8AD-01A-11D-A435-10	7732047	47533216	201717405	2	7360											
ANKRD13C	81573	broad.mit.edu	37	chr1	70820000	70820000	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtaccgccgagggcagccGccgcttcctcatccccgggc	13	18	1	0	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	ANKRD13C	NM_030816	exon1	c.C92T	p.A31V	GCAGCCGCCGCTT		77	4	0.05	75	0	0		36		15	0	0				A	70820000	G	A	70820000	3	1	100	1	0	0	0	0	1	0	0	0	639	1087	38	1	1585	1	ANKRD13C	1	70820000	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	23286784	70820000	178430621	3	7361											
WDR63	126820	mdanderson.org	37	chr1	85573731	85573731	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttagcacaatatgtttttgGgatattagaccacagaaacc	7	7	0	2	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_145172	exon15	c.G1569T	p.W523C	TTTTTGGGATATT		40	3	0.08	63	0	0				0	0					T	85573731	G	T	85573731	3	4	100	1	0	0	0	0	1	0	0	0	17373	1241	43	3	1623	3	WDR63	1	85573731	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	14753731	85573731	163676890	4	7362											
SEC22B	9554	broad.mit.edu	37	chr1	145109975	145109976	+	RNA	INS	-	-	C													cacatgtgacaggaactttgINSctaaagatctacttgattgg					rs11458983	bycluster	TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	.	.	.	.	AACTTTGCTAAAG		9	4	0.44	6	0	0				0	0					C	145109976	-	C	145109975	6	5	100	0	1	1	1	0	0	0	0	0	14042	1334	46	0		0	SEC22B	1	145109975	RNA	INS	-	TCGA-VF-A8AD-01A-11D-A435-10	59536244	145109975	104140646	5	7363											
SLC27A3	11000	broad.mit.edu	37	chr1	153750946	153750946	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccctttccccagcatatctTccccttctccttgattcgct	3	18	2	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	SLC27A3	NM_024330	exon6	c.T1505C	p.F502S	ATATCTTCCCCTT		236	5	0.02	197	0	0		42		68	0	0				C	153750946	T	C	153750946	3	2	100	1	0	0	0	0	1	0	0	0	14581	1783	62	4	1527	4	SLC27A3	1	153750946	Missense_Mutation	SNP	T	TCGA-VF-A8AD-01A-11D-A435-10	8640971	153750946	95499675	6	7364											
IRF6	3664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr1	209968742	209968742	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catcattatccttctcatccCagggagcagaccctgtggat	8	13	2	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_006147	exon5	c.G401A	p.W134X	TCATCCCAGGGAG		90	13	0.14	83	0	0				18	1	0.06				T	209968742	C	T	209968742	4	4	100	1	0	0	0	0	0	1	0	0	7877	595	21	3	1022	3	IRF6	1	209968742	Nonsense_Mutation	SNP	C	TCGA-VF-A8AD-01A-11D-A435-10	56217796	209968742	39281879	7	7365											
ERO1LB	56605	broad.mit.edu	37	chr1	236416763	236416763	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtcttttattgaacagtGgccatcttctgcccagaaag	8	10	3	2	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	ERO1LB	NM_019891	exon3	c.C265A	p.H89N	AACAGTGGCCATC		263	6	0.02	204	0	0		48		4	0	0				T	236416763	G	T	236416763	3	4	100	1	0	0	0	0	1	0	0	0	5268	1348	47	3	1194	3	ERO1LB	1	236416763	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	26448021	236416763	12833858	8	7366											
SDCCAG8	10806	mdanderson.org	37	chr1	243471336	243471336	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acttgtgaagatcttaaagaGcaactaaagcataaagaatt	7	5	1	4	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	SDCCAG8,NS,carcinoma,0,2	SDCCAG8	NM_006642	exon8	c.G786T	p.E262D	TAAAGAGCAACTA		119	5	0.04	124	0	0		0	2	14	0	0				T	243471336	G	T	243471336	3	4	100	1	0	0	0	0	1	0	0	0	14012	962	34	2	816	2	SDCCAG8	1	243471336	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	7054573	243471336	5779285	9	7367											
KCNK3	3777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	26950833	26950833	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	caggcctactactactgcttCatcaccctcaccaccatcgg	5	18	3	0	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_002246	exon2	c.C582T	p.F194F	CTGCTTCATCACC		184	35	0.19	150	0	0				5	2	0.4				T	26950833	C	T	26950833	2	4	100	1	0	0	0	0	0	0	0	1	8110	825	29	3		3	KCNK3	2	26950833	Silent	SNP	C	TCGA-VF-A8AD-01A-11D-A435-10		26950833	216248540	10	7368											
FER1L5	90342	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	97363297	97363297	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctacagaaagttctggttcaAgtccagtaaagcagaggtga	11	7	2	3	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	FER1L5	NM_001113382	exon37	c.A4199T	p.K1400M	GGTTCAAGTCCAG		287	9	0.03	285	0	0		113		0	0					T	97363297	A	T	97363297	1	4	100	0	1	0	0	0	0	0	0	0	5846	72	3	5		5	FER1L5	2	97363297	RNA	SNP	A	TCGA-VF-A8AD-01A-11D-A435-10	70412464	97363297	145836076	11	7369											
MST1	4485	hgsc.bcm.edu;broad.mit.edu	37	chr3	49723603	49723603	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctgagccgtcggggttccGgcagaagttctcccgaaggt	14	12	2	2	rs199969873	bycluster;by1000genomes	TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	MST1,NS,carcinoma,0,5	MST1	NM_020998	exon9	c.C1039T	p.R347W	GGTTCCGGCAGAA		49	6	0.12	75	1	0.0133333333	0.005	0	5	8	0	0				A	49723603	G	A	49723603	3	1	100	1	0	0	0	0	1	0	0	0	9937	1115	39	1	1178	1	MST1	3	49723603	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10		49723603	148298827	12	7370											
TLR9	54106	mdanderson.org	37	chr3	52256987	52256987	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggagcaaggtccccaggctGcagccagaccttctcccctc	10	18	1	1	rs373748615	alternate_allele	TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_017442	exon2	c.C1345A	p.Q449K	CAGGCTGCAGCCA		44	3	0.07	81	0	0				3	0	0				T	52256987	G	T	52256987	3	4	100	1	0	0	0	0	1	0	0	0	16017	1328	46	2	1757	2	TLR9	3	52256987	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	2533384	52256987	145765443	13	7371											
DPPA4	55211	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	109047903	109047903	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	accatctgtgtctgcagggaGacttttcccatggaccacac	9	13	2	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	DPPA4	NM_018189	exon6	c.C712T	p.L238F	CAGGGAGACTTTT		348	10	0.03	362	0	0		56		1072	67	0.06	rescued with RNA-seq			A	109047903	G	A	109047903	3	1	100	1	0	0	0	0	1	0	0	0	4762	942	33	3	210	3	DPPA4	3	109047903	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	56790916	109047903	88974527	14	7372											
CPZ	8532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	8621216	8621216	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggaggtgccagctctttgGgggaggccacggagcccgac	18	11	1	0	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_001014447	exon11	c.G1831C	p.G611R	TCTTTGGGGGAGG		127	30	0.24	136	0	0				12	0	0				C	8621216	G	C	8621216	3	2	100	1	0	0	0	0	1	0	0	0	3862	1232	43	5	1873	5	CPZ	4	8621216	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10		8621216	182533060	15	7373											
UGT2B10	7365	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	69682264	69682264	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtcacagcttcagtcctgGctactcatttgaaaggcaca	8	12	3	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	UGT2B10	.	.	.	.	GTCCTGGCTACTC		264	8	0.03	357	0	0		134		0	0					C	69682264	G	C	69682264	3	2	100	1	0	0	0	0	1	0	0	0	17015	1203	42	5	529	5	UGT2B10	4	69682264	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	61061048	69682264	121472012	16	7374											
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr4	126240963	126240963	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ataaagactttgggccaaatGgagaagtaaggtattctttt	10	4	1	2	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_024582	exon1	c.G3397T	p.G1133X	CCAAATGGAGAAG		114	24	0.21	96	0	0				0	0					T	126240963	G	T	126240963	4	4	100	1	0	0	0	0	0	1	0	0	5724	1349	47	3	3399	3	FAT4	4	126240963	Nonsense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	56558699	126240963	64913313	17	7375											
PPID	5481	mdanderson.org	37	chr4	159632000	159632000	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatgggtctagttcaagagCctacaaaaaagtataaagct	9	6	2	2	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_005038	exon8	c.G895A	p.A299T	CAAGAGCCTACAA		82	4	0.05	103	0	0				123	0	0				T	159632000	C	T	159632000	3	4	100	1	0	0	0	0	1	0	0	0	12369	753	26	2	229	2	PPID	4	159632000	Missense_Mutation	SNP	C	TCGA-VF-A8AD-01A-11D-A435-10	33391037	159632000	31522276	18	7376											
SEMA5A	9037	broad.mit.edu	37	chr5	9202166	9202166	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacttccccaggacgggagCagttcaggcgagccttcatg	14	12	2	0	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	SEMA5A	NM_003966	exon9	c.G833A	p.C278Y	CGGGAGCAGTTCA		371	8	0.02	429	1	0.0023310023		236		0	0					T	9202166	C	T	9202166	3	4	100	1	0	0	0	0	1	0	0	0	14090	710	25	2	2451	2	SEMA5A	5	9202166	Missense_Mutation	SNP	C	TCGA-VF-A8AD-01A-11D-A435-10		9202166	171713094	19	7377											
SPEF2	79925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	35753823	35753823	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagagctggttacaggacaCtcttggaatgacaatgaacc	11	8	1	3	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_024867	exon24	c.C3428T	p.T1143I	AGGACACTCTTGG		85	17	0.2	110	0	0				1	0	0				T	35753823	C	T	35753823	3	4	100	1	0	0	0	0	1	0	0	0	15090	565	20	3	3543	3	SPEF2	5	35753823	Missense_Mutation	SNP	C	TCGA-VF-A8AD-01A-11D-A435-10	26551657	35753823	145161437	20	7378											
SLCO4C1	353189	mdanderson.org	37	chr5	101631956	101631956	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagttctcaatacctttgGcgctcttcatgtctggatgg	9	11	4	0	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_180991	exon1	c.C11A	p.A4D	CCTTTGGCGCTCT		55	3	0.05	99	0	0				3	0	0				T	101631956	G	T	101631956	3	4	100	1	0	0	0	0	1	0	0	0	14784	1203	42	2	2215	2	SLCO4C1	5	101631956	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	65878133	101631956	79283304	21	7379											
SLC6A7	6534	hgsc.bcm.edu	37	chr5	149578888	149578888	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgctggcctgggtcatcGtgttcctctgtatcctcaag	11	12	3	0	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_014228	exon5	c.G682T	p.V228L	GTCATCGTGTTCC		71	4	0.06	78	0	0				1	0	0				T	149578888	G	T	149578888	3	4	100	1	0	0	0	0	1	0	0	0	14743	1145	40	1	700	1	SLC6A7	5	149578888	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	47946932	149578888	31336372	22	7380											
ZNF165	7718	mdanderson.org	37	chr6	28053615	28053615	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacccagagagtggagaggaGgcagtgaccatactagaaga	14	7	0	5	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_003447	exon2	c.G357T	p.E119D	AGAGGAGGCAGTG		52	3	0.06	41	0	0				12	0	0				T	28053615	G	T	28053615	3	4	100	1	0	0	0	0	1	0	0	0	17797	991	35	3	359	3	ZNF165	6	28053615	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10		28053615	143061452	23	7381											
KCNQ5	56479	broad.mit.edu	37	chr6	73843232	73843232	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagcctcagtaggtgacaggAggtccccaagcaccgacatc	11	13	1	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	KCNQ5	NM_001160133	exon11	c.A1393G	p.R465G	GACAGGAGGTCCC		252	5	0.02	190	0	0		153		1	0	0				G	73843232	A	G	73843232	3	3	100	1	0	0	0	0	1	0	0	0	8129	295	11	4	1435	4	KCNQ5	6	73843232	Missense_Mutation	SNP	A	TCGA-VF-A8AD-01A-11D-A435-10	45789617	73843232	97271835	24	7382											
SEC63	11231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr6	108214783	108214783	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaaaggtttctttttttttGatttagcagttttcttgggt	8	3	2	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_007214	exon16	c.C1577G	p.S526X	TTTTTTGATTTAG		89	16	0.18	102	0	0				212	6	0.03				C	108214783	G	C	108214783	4	2	100	1	0	0	0	0	0	1	0	0	14058	1294	45	5	729	5	SEC63	6	108214783	Nonsense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	34371551	108214783	62900284	25	7383											
FIG4	9896	mdanderson.org	37	chr6	110064975	110064975	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatcttgaatttagtgaaGgtatgatgtgctcatctgtt	9	5	4	3	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_014845	exon10	c.G1137T	p.K379N	AGTGAAGGTATGA		69	5	0.07	68	0	0				18	0	0				T	110064975	G	T	110064975	3	4	100	1	0	0	0	0	1	0	0	0	5920	1014	35	3	1175	3	FIG4	6	110064975	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	1850192	110064975	61050092	26	7384											
GPER	2852	mdanderson.org	37	chr7	1132183	1132183	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttcttcgtctgctggctGccggagaacgtcttcatcag	11	12	6	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_001505	exon2	c.G819T	p.L273L	CTGGCTGCCGGAG		45	3	0.07	36	0	0				0	0					T	1132183	G	T	1132183	2	4	100	1	0	0	0	0	0	0	0	1	6646	1306	46	2		2	GPER	7	1132183	Silent	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10		1132183	158006480	27	7385											
RADIL	55698	ucsc.edu	37	chr7	4874814	4874814	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatgctgggcttgctggaGggggtccgctggcccaccgt	17	12	0	1	rs13232656	alternate_allele	TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	RADIL	NM_018059	exon4	c.C840A	p.P280P	GCTGGAGGGGGTC		39	4	0.1	35	0	0		110		19	0	0				T	4874814	G	T	4874814	2	4	100	1	0	0	0	0	0	0	0	1	13048	987	35	3		3	RADIL	7	4874814	Silent	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	3742631	4874814	154263849	28	7386											
CCDC146	57639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	76889506	76889506	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacataaccaattggtcaaGctattggaattagccagaga	9	7	1	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_020879	exon8	c.G939A	p.K313K	GGTCAAGCTATTG		294	44	0.15	260	0	0				2	0	0				A	76889506	G	A	76889506	2	1	100	1	0	0	0	0	0	0	0	1	2798	962	34	2		2	CCDC146	7	76889506	Silent	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	72014692	76889506	82249157	29	7387											
EZH2	0	broad.mit.edu	37	chr7	148512600	148512600	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatggaaagatgctaacccTttttcagctgtatctttctg	8	8	3	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	EZH2	NM_004456	exon13	c.A1544G	p.K515R	TAACCCTTTTTCA		397	5	0.01	302	0	0		823		88	0	0				C	148512600	T	C	148512600	3	2	100	1	0	0	0	0	1	0	0	0	5362	1609	56	4	743	4	EZH2	7	148512600	Missense_Mutation	SNP	T	TCGA-VF-A8AD-01A-11D-A435-10	71623094	148512600	10626063	30	7388											
MFHAS1	9258	mdanderson.org	37	chr8	8750295	8750295	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggttcctgcgcaggaccaGgacgcgcaggctgcccagcg	16	15	0	0	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_004225	exon1	c.C274A	p.L92M	GGACCAGGACGCG		54	4	0.07	85	0	0				0	0					T	8750295	G	T	8750295	3	4	100	1	0	0	0	0	1	0	0	0	9570	991	35	3	2896	3	MFHAS1	8	8750295	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10		8750295	137613727	31	7389											
RP1L1	94137	mdanderson.org	37	chr8	10470155	10470155	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcccctatctgggcagaggGgctggcactgtccaccccgt	13	15	1	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_178857	exon4	c.C1453A	p.P485T	CAGAGGGGCTGGC		24	3	0.13	26	0	0				0	0					T	10470155	G	T	10470155	3	4	100	1	0	0	0	0	1	0	0	0	13584	1232	43	3	5753	3	RP1L1	8	10470155	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	1719860	10470155	135893867	32	7390											
PTK2B	2185	broad.mit.edu	37	chr8	27315955	27315955	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacaccctggctgtggacGccaagaacctgctcgacgct	10	16	0	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	PTK2B	NM_173174	exon36	c.G2959T	p.A987S	GTGGACGCCAAGA		95	3	0.03	139	1	0.0071942446		304		54	0	0				T	27315955	G	T	27315955	3	4	100	1	0	0	0	0	1	0	0	0	12812	1087	38	1	3077	1	PTK2B	8	27315955	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	16845800	27315955	119048067	33	7391											
BAI1	575	mdanderson.org	37	chr8	143566121	143566121	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcataccaggtgacagacaaCctgggtaagcctgcccgcct	11	14	0	2	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_001702	exon12	c.C2304T	p.N768N	AGACAACCTGGGT		40	3	0.08	37	0	0				0	0					T	143566121	C	T	143566121	2	4	100	1	0	0	0	0	0	0	0	1	1296	506	18	3		3	BAI1	8	143566121	Silent	SNP	C	TCGA-VF-A8AD-01A-11D-A435-10	116250166	143566121	2797901	34	7392											
TYRP1	7306	broad.mit.edu	37	chr9	12702271	12702271	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catcccatttttttctgcagGcaccgaggatgggccaatta	9	11	1	0	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	TYRP1	NM_000550	exon5	c.G914T	p.S305I	CTGCAGGCACCGA		202	6	0.03	221	1	0.0045248869		60		0	0					T	12702271	G	T	12702271	5	4	100	1	0	0	0	0	0	0	1	0	16877	1217	42	2	928	2	TYRP1	9	12702271	Splice_Site	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10		12702271	128511160	35	7393											
NPR2	4882	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr9	35802591	35802591	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcactgaatactgtcctcGtgggagtttacaggtgaggg	14	7	1	2	rs180950551	bycluster;by1000genomes	TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_003995	exon11	c.G1802A	p.R601H	GTCCTCGTGGGAG		235	12	0.05	210	0	0	0.001			13	0	0				A	35802591	G	A	35802591	3	1	100	1	0	0	0	0	1	0	0	0	10642	1145	40	1	1844	1	NPR2	9	35802591	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	23100320	35802591	105410840	36	7394											
BICD2	23299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	95482926	95482926	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtctccagcgcctcctccaGctgccgctctgagatctcct	9	18	3	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_001003800	exon4	c.C718G	p.L240V	CCTCCAGCTGCCG		181	19	0.1	179	0	0				11	2	0.18				C	95482926	G	C	95482926	3	2	100	1	0	0	0	0	1	0	0	0	1428	962	34	5	1875	5	BICD2	9	95482926	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	59680335	95482926	45730505	37	7395											
C9orf96	169436	mdanderson.org	37	chr9	136269921	136269921	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatcccccagagctggcgGccttcaaggtggtggtgcag	14	14	1	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_153710	exon17	c.G1741T	p.A581S	CTGGCGGCCTTCA		48	3	0.06	39	0	0				1	0	0				T	136269921	G	T	136269921	3	4	100	1	0	0	0	0	1	0	0	0	2526	1203	42	2	1807	2	C9orf96	9	136269921	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	40786995	136269921	4943510	38	7396											
TRPM5	29850	bcgsc.ca;mdanderson.org	37	chr11	2429028	2429028	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttcatgagcagcacattgGtgaccaacaggaaggtgacc	13	9	1	3	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	TRPM5	NM_014555	exon19	c.C2897T	p.T966I	ACATTGGTGACCA		100	5	0.05	115	0	0		86		0	0					A	2429028	G	A	2429028	3	1	100	1	0	0	0	0	1	0	0	0	16649	1261	44	3	624	3	TRPM5	11	2429028	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10		2429028	132577488	39	7397											
OR52N4	390072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	5776663	5776663	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggcagtggtcagcctctcCtcagcagatgctcggcagaa	13	13	3	2	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	OR52N4,NS,carcinoma,0,1	OR52N4	NM_001005175	exon1	c.C693T	p.S231S	CCTCTCCTCAGCA		173	25	0.14	152	0	0		0	1	1	0	0				T	5776663	C	T	5776663	2	4	100	1	0	0	0	0	0	0	0	1	11176	668	24	3		3	OR52N4	11	5776663	Silent	SNP	C	TCGA-VF-A8AD-01A-11D-A435-10	3347635	5776663	129229853	40	7398											
INCENP	3619	mdanderson.org	37	chr11	61897743	61897743	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gaccccaagggtcaaggggtCgggacggggcggtctgcgtc	19	11	2	0	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_020238	exon4	c.C744T	p.V248V	AGGGGTCGGGACG		48	3	0.06	44	0	0				31	0	0				T	61897743	C	T	61897743	2	4	100	1	0	0	0	0	0	0	0	1	7776	871	31	1		1	INCENP	11	61897743	Silent	SNP	C	TCGA-VF-A8AD-01A-11D-A435-10	56121080	61897743	73108773	41	7399											
CABP2	51475	mdanderson.org	37	chr11	67290111	67290111	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggacgcctggcgcggggTccccctgctccttggggctg	16	16	0	0	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_016366	exon2	c.A119G	p.D40G	GCGGGGTCCCCCT		64	4	0.06	75	1	0.0133333333				0	0					C	67290111	T	C	67290111	3	2	100	1	0	0	0	0	1	0	0	0	2550	1667	58	4	567	4	CABP2	11	67290111	Missense_Mutation	SNP	T	TCGA-VF-A8AD-01A-11D-A435-10	5392368	67290111	67716405	42	7400											
SYTL2	54843	broad.mit.edu	37	chr11	85437269	85437269	+	Frame_Shift_Del	DEL	T	T	-													atttcctctcttgccataacTttttttgggcttagaagcac					novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	SYTL2	NM_206927	exon1	c.231delA	p.K77fs	CATAACTTTTTTT		485	7	0.01	190	0	0		231		0	0					-	85437269	T	-	85437269	7	5	100	1	0	1	0	1	0	0	0	0	15539	1606	56	0	3639	0	SYTL2	11	85437269	Frame_Shift_Del	DEL	T	TCGA-VF-A8AD-01A-11D-A435-10	18147158	85437269	49569247	43	7401											
HYOU1	10525	mdanderson.org	37	chr11	118925755	118925755	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgcccaacacttcctcaGgtgagaactgcagctgcctg	9	15	1	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_001130991	exon6	c.C437A	p.P146H	TCCTCAGGTGAGA		49	3	0.06	69	0	0				103	0	0				T	118925755	G	T	118925755	3	4	100	1	0	0	0	0	1	0	0	0	7513	1000	35	3	2646	3	HYOU1	11	118925755	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	33488486	118925755	16080761	44	7402											
C2CD2L	9854	broad.mit.edu;mdanderson.org	37	chr11	118983227	118983227	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggccacactgcctgtgggcTccccctccagaccactgtct	9	18	1	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	C2CD2L,left_upper_lobe,carcinoma,-1,1	C2CD2L	NM_014807	exon9	c.T1120C	p.S374P	GTGGGCTCCCCCT		68	4	0.06	83	0	0		39	1	13	0	0				C	118983227	T	C	118983227	3	2	100	1	0	0	0	0	1	0	0	0	2167	1551	54	4	1154	4	C2CD2L	11	118983227	Missense_Mutation	SNP	T	TCGA-VF-A8AD-01A-11D-A435-10	57472	118983227	16023289	45	7403											
FOXM1	2305	hgsc.bcm.edu	37	chr12	2968602	2968644	+	Frame_Shift_Del	DEL	TGATTCCTCTTTGAAAGATGGGGCCGGGGAGGGCCACTCTTCC	TGATTCCTCTTTGAAAGATGGGGCCGGGGAGGGCCACTCTTCC	-													gaatcctcccaggagtgagaTgattcctctttgaaagatgg					novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	TGATTCCTCTTTGAAAGATGGGGCCGGGGAGGGCCACTCTTCC	TGATTCCTCTTTGAAAGATGGGGCCGGGGAGGGCCACTCTTCC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	FOXM1	NM_202002	exon10	c.1567_1609del	p.523_537del	GTGAGATGATTCC		83	0	0	53	0	0		62		283	0	0				-	2968644	TGATTCCTCTTTGAAAGATGGGGCCGGGGAGGGCCACTCTTCC	-	2968602	7	5	100	1	0	1	0	1	0	0	0	0	6051	1451	51	0	801	0	FOXM1	12	2968602	Frame_Shift_Del	DEL	TGATTCCTCTTTGAAAGATGGGGCCGGGGAGGGCCACTCTTCC	TCGA-VF-A8AD-01A-11D-A435-10		2968602	130883293	46	7404											
ACACB	32	broad.mit.edu	37	chr12	109629568	109629568	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcattgctgagaaagtgcaGgtagggagtgagctgcctgt	15	7	1	2	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	ACACB	NM_001093	exon13	c.G2295T	p.Q765H	AGTGCAGGTAGGG		225	4	0.02	203	0	0		330		1	0	0				T	109629568	G	T	109629568	5	4	100	1	0	0	0	0	0	0	1	0	107	1014	35	3	2345	3	ACACB	12	109629568	Splice_Site	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	106660966	109629568	24222327	47	7405											
TBX5	6910	broad.mit.edu	37	chr12	114836479	114836479	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgggggagtctgggtgcaCgtacaggcggccaggcatgg	21	9	1	0	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	TBX5	NM_000192	exon5	c.G409A	p.V137M	GGTGCACGTACAG		163	5	0.03	151	0	0		188		2	0	0				T	114836479	C	T	114836479	3	4	100	1	0	0	0	0	1	0	0	0	15720	536	19	1	1234	1	TBX5	12	114836479	Missense_Mutation	SNP	C	TCGA-VF-A8AD-01A-11D-A435-10	5206911	114836479	19015416	48	7406											
NCOR2	9612	mdanderson.org	37	chr12	124825195	124825195	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgctgaagggctggggcGcggtggggaggtaggcaagg	24	6	0	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_006312	exon37	c.C5291T	p.A1764V	TGGGGCGCGGTGG		30	4	0.13	30	0	0				83	11	0.13				A	124825195	G	A	124825195	3	1	100	1	0	0	0	0	1	0	0	0	10282	1087	38	1	2305	1	NCOR2	12	124825195	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	9988716	124825195	9026700	49	7407											
MRPS11	64963	bcgsc.ca	37	chr15	89010689	89010689	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actaggggaaagctcagtccCggaactgctagaacgaacca	11	11	1	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	MRPS11	.	.	.	.	CAGTCCCGGAACT		12	3	0.25	24	0	0		14		0	0					T	89010689	C	T	89010689	3	4	100	1	0	0	0	0	1	0	0	0	9870	667	23	1		1	MRPS11	15	89010689	Missense_Mutation	SNP	C	TCGA-VF-A8AD-01A-11D-A435-10		89010689	13520703	50	7408											
FAM173A	65990	mdanderson.org	37	chr16	771841	771841	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcctccgcccggccgtggGctacgagctgaacccctggc	14	18	0	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_023933	exon3	c.G308T	p.G103V	CCGTGGGCTACGA		14	2	0.14	34	0	0				66	0	0				T	771841	G	T	771841	3	4	100	1	0	0	0	0	1	0	0	0	5522	1203	42	2	318	2	FAM173A	16	771841	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10		771841	89582912	51	7409											
GRIN2A	2903	hgsc.bcm.edu	37	chr16	9862936	9862936	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccacagggtctccagctcCtccatctcacctggacagat	8	16	2	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_000833	exon13	c.G2367A	p.E789E	CAGCTCCTCCATC		85	4	0.05	80	0	0				0	0					T	9862936	C	T	9862936	2	4	100	1	0	0	0	0	0	0	0	1	6819	680	24	3		3	GRIN2A	16	9862936	Silent	SNP	C	TCGA-VF-A8AD-01A-11D-A435-10	9091095	9862936	80491817	52	7410											
GRIN2A	2903	mdanderson.org	37	chr16	9916124	9916124	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaactgccatccttaccccGttttcaggctgaccaaggcg	9	14	1	1	rs376029542	alternate_allele	TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_001134407	exon10	c.C2165A	p.T722K	TACCCCGTTTTCA		99	5	0.05	109	0	0				0	0					T	9916124	G	T	9916124	3	4	100	1	0	0	0	0	1	0	0	0	6819	1145	40	1	2245	1	GRIN2A	16	9916124	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	53188	9916124	80438629	53	7411											
RBL2	5934	mdanderson.org	37	chr16	53495691	53495691	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aacccaggctattgctaacaGactgaaagaaatgtttgaaa	8	7	0	4	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	RBL2,NS,carcinoma,-1,2	RBL2	NM_005611	exon10	c.G1385T	p.R462I	CTAACAGACTGAA		96	5	0.05	90	0	0		-1	2	6	0	0				T	53495691	G	T	53495691	3	4	100	1	0	0	0	0	1	0	0	0	13161	942	33	3	1423	3	RBL2	16	53495691	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	43579567	53495691	36859062	54	7412											
NLGN2	57555	mdanderson.org	37	chr17	7320871	7320871	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcggggtggtggcgtcgGggcggaccctgccgaggctc	21	11	0	0	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_020795	exon7	c.G2261T	p.G754V	GCGTCGGGGCGGA		18	2	0.11	11	0	0				14	0	0				T	7320871	G	T	7320871	3	4	100	1	0	0	0	0	1	0	0	0	10508	1232	43	3	2287	3	NLGN2	17	7320871	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10		7320871	73874339	55	7413											
WRAP53	55135	mdanderson.org	37	chr17	7606607	7606607	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactgcctccggtcagcgtGtgtttcctgagcccacagag	11	15	1	2	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_001143991	exon11	c.G1450T	p.V484L	CAGCGTGTGTTTC		41	3	0.07	33	0	0				258	0	0				T	7606607	G	T	7606607	3	4	100	1	0	0	0	0	1	0	0	0	17459	1377	48	3	1488	3	WRAP53	17	7606607	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	285736	7606607	73588603	56	7414											
LRRC48	83450	broad.mit.edu	37	chr17	17897710	17897710	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggacgagcaggcgcagcGggaggagctagagaagcaca	19	8	0	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	LRRC48	NM_031294	exon7	c.G689T	p.R230L	CGCAGCGGGAGGA		63	3	0.05	38	0	0		49		0	0					T	17897710	G	T	17897710	3	4	100	1	0	0	0	0	1	0	0	0	9049	1116	39	1	707	1	LRRC48	17	17897710	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	10291103	17897710	63297500	57	7415											
KRTAP4-3	85290	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	39323995	39323995	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagcaggagggctggcagcActggggcctgtagcagctgg	19	10	0	0	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	KRTAP4-3	NM_033187	exon1	c.T430G	p.C144G	GGCAGCACTGGGG		177	9	0.05	157	1	0.0063694268		40		0	0					C	39323995	A	C	39323995	3	2	100	1	0	0	0	0	1	0	0	0	8594	159	6	4	161	4	KRTAP4-3	17	39323995	Missense_Mutation	SNP	A	TCGA-VF-A8AD-01A-11D-A435-10	21426285	39323995	41871215	58	7416											
DNAH17	8632	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	76556825	76556825	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccactcctggcacccaccgcTttgctgaagttgacgtggat	10	14	0	2	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	DNAH17	NM_173628	exon13	c.A2028G	p.K676K	CACCGCTTTGCTG		80	5	0.06	68	4	0.0588235294		347		0	0					C	76556825	T	C	76556825	2	2	100	1	0	0	0	0	0	0	0	1	4629	1606	56	4		4	DNAH17	17	76556825	Silent	SNP	T	TCGA-VF-A8AD-01A-11D-A435-10	37232830	76556825	4638385	59	7417											
FN3KRP	79672	broad.mit.edu	37	chr17	80680735	80680735	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccggtttggatttgacgtGgtgacgtgctgtggatacct	15	8	0	2	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	FN3KRP,NS,carcinoma,+2,1	FN3KRP	NM_024619	exon4	c.G441T	p.V147V	TGACGTGGTGACG		324	6	0.02	246	0	0		31	1	172	0	0				T	80680735	G	T	80680735	2	4	100	1	0	0	0	0	0	0	0	1	5996	1335	47	3		3	FN3KRP	17	80680735	Silent	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	4123910	80680735	514475	60	7418											
OR7G3	390883	mdanderson.org	37	chr19	9237191	9237191	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	actaacgatgaaggacagcaGaagcagcagcccacagagtt	11	10	0	3	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_001001958	exon1	c.C436A	p.L146M	ACAGCAGAAGCAG		89	4	0.04	113	1	0.0088495575				0	0					T	9237191	G	T	9237191	3	4	100	1	0	0	0	0	1	0	0	0	11270	933	33	3	505	3	OR7G3	19	9237191	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10		9237191	49891792	61	7419											
CCDC151	115948	mdanderson.org	37	chr19	11532404	11532404	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggccctggagctgcgcctGcagtttcagcagcttttcct	12	13	1	0	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_145045	exon11	c.C1531A	p.Q511K	GCGCCTGCAGTTT		133	5	0.04	157	0	0				7	0	0				T	11532404	G	T	11532404	3	4	100	1	0	0	0	0	1	0	0	0	2804	1328	46	2	268	2	CCDC151	19	11532404	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	2295213	11532404	47596579	62	7420											
ZNF439	90594	hgsc.bcm.edu	37	chr19	11978338	11978338	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	acaaggcatgtgaatgtcagGaatatggaccaaagccatgg	12	7	1	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_152262	exon3	c.G454T	p.E152X	TGTCAGGAATATG		123	5	0.04	109	0	0				6	0	0				T	11978338	G	T	11978338	4	4	100	1	0	0	0	0	0	1	0	0	17967	1175	41	3	464	3	ZNF439	19	11978338	Nonsense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	445934	11978338	47150645	63	7421											
ANO8	57719	mdanderson.org	37	chr19	17435612	17435612	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctctgaacccggctgctgCcactgctgggggtcccatct	11	16	2	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_020959	exon17	c.G3245A	p.G1082D	CTGCTGCCACTGC		52	4	0.08	67	0	0				8	0	0				T	17435612	C	T	17435612	3	4	100	1	0	0	0	0	1	0	0	0	697	739	26	2	461	2	ANO8	19	17435612	Missense_Mutation	SNP	C	TCGA-VF-A8AD-01A-11D-A435-10	5457274	17435612	41693371	64	7422											
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	17945938	17945938	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	accccagggtcactcagcttGatgaagggcgggctcccatc	12	14	2	2	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_000215	exon15	c.C2001T	p.I667I	CAGCTTGATGAAG		112	18	0.16	132	0	0				9	0	0				A	17945938	G	A	17945938	2	1	100	1	0	0	0	0	0	0	0	1	7982	1280	45	3		3	JAK3	19	17945938	Silent	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	510326	17945938	41183045	65	7423											
ZNF792	126375	broad.mit.edu	37	chr19	35454540	35454540	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccaagcactcacctgcgcGgggtcccgcagcgccgccgc	13	19	1	0	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	ZNF792	NM_175872	exon1	c.C27A	p.P9P	CTGCGCGGGGTCC		224	5	0.02	228	1	0.0043859649		46		0	0					T	35454540	G	T	35454540	2	4	100	1	0	0	0	0	0	0	0	1	18212	1103	39	1		1	ZNF792	19	35454540	Silent	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	17508602	35454540	23674443	66	7424											
FFAR1	2864	mdanderson.org	37	chr19	35842505	35842505	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctatgtggccgcctttgcGctgggcttcccgctcaacgt	11	15	2	0	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_005303	exon1	c.G51T	p.A17A	CTTTGCGCTGGGC		22	2	0.09	29	0	0				0	0					T	35842505	G	T	35842505	2	4	100	1	0	0	0	0	0	0	0	1	5859	1074	38	1		1	FFAR1	19	35842505	Silent	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	387965	35842505	23286478	67	7425											
SCAF1	58506	mdanderson.org	37	chr19	50161566	50161566	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccgcaagcacggtcgcaaGccaggggaccccccagggcc	13	17	0	0	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_021228	exon11	c.G3849T	p.K1283N	TCGCAAGCCAGGG		34	3	0.09	31	0	0				271	0	0				T	50161566	G	T	50161566	3	4	100	1	0	0	0	0	1	0	0	0	13920	962	34	2	3887	2	SCAF1	19	50161566	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	14319061	50161566	8967417	68	7426											
TMX4	56255	broad.mit.edu	37	chr20	8000252	8000252	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agctgcgggccgcagcgcccAcccgccatgttgggcgccga	15	17	0	0	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	TMX4	NM_021156	exon1	c.T9G	p.G3G	GCGCCCACCCGCC		35	11	0.31	39	16	0.4102564103		39		5	0	0				C	8000252	A	C	8000252	2	2	100	1	0	0	0	0	0	0	0	1	16328	146	6	4		4	TMX4	20	8000252	Silent	SNP	A	TCGA-VF-A8AD-01A-11D-A435-10		8000252	55025268	69	7427											
ELMO2	63916	hgsc.bcm.edu	37	chr20	45014804	45014804	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcccacggtgatttcctcGgctatcttctggtacagact	9	12	2	2	rs201990540	bycluster;by1000genomes	TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	ELMO2,NS,carcinoma,-1,1	ELMO2	NM_182764	exon8	c.C636T	p.A212A	TTCCTCGGCTATC		79	6	0.08	77	2	0.025974026	0.002	-1	1	16	0	0				A	45014804	G	A	45014804	2	1	100	1	0	0	0	0	0	0	0	1	5094	1103	39	1		1	ELMO2	20	45014804	Silent	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	37014552	45014804	18010716	70	7428											
KRTAP13-1	140258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr21	31768921	31768921	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggatcaggcttctactatTgatcatcttgttaaattgct	8	7	4	1	rs141793094	bycluster	TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_181599	exon1	c.T517C	p.X173R	TACTATTGATCAT		170	47	0.28	164	0	0	0			0	0					C	31768921	T	C	31768921	3	2	100	1	0	0	0	0	1	0	0	0	8564	1825	63	4	519	4	KRTAP13-1	21	31768921	Missense_Mutation	SNP	T	TCGA-VF-A8AD-01A-11D-A435-10		31768921	16360974	71	7429											
HIRA	7290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr22	19348846	19348846	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acacatggcctccttctctgCggttagggcagctggagact	12	12	1	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	HIRA,NS,carcinoma,0,1	HIRA	NM_003325	exon17	c.G1999A	p.A667T	TCTCTGCGGTTAG		143	6	0.04	108	0	0		0	1	56	0	0				T	19348846	C	T	19348846	3	4	100	1	0	0	0	0	1	0	0	0	7160	768	27	1	1090	1	HIRA	22	19348846	Missense_Mutation	SNP	C	TCGA-VF-A8AD-01A-11D-A435-10		19348846	31955720	72	7430											
ZNF280B	140883	mdanderson.org	37	chr22	22842206	22842206	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cctggctgaagaggttccagTgacacttgaatagtaacttt	10	8	0	4	rs11109	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_080764	exon4	c.A1518T	p.S506S	TTCCAGTGACACT		117	24	0.21	104	0	0				6	4	0.67				A	22842206	T	A	22842206	2	1	100	1	0	0	0	0	0	0	0	1	17872	1683	59	5		5	ZNF280B	22	22842206	Silent	SNP	T	TCGA-VF-A8AD-01A-11D-A435-10	3493360	22842206	28462360	73	7431											
MTMR3	8897	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr22	30416630	30416630	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacttgcaccacaagtggctGcatagccactcaggaaggcc	10	13	1	0	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	MTMR3	NM_021090	exon17	c.G2982A	p.L994L	GTGGCTGCATAGC		135	6	0.04	123	0	0		106		34	0	0				A	30416630	G	A	30416630	2	1	100	1	0	0	0	0	0	0	0	1	9992	1306	46	2		2	MTMR3	22	30416630	Silent	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	7574424	30416630	20887936	74	7432											
TNRC6B	23112	broad.mit.edu	37	chr22	40658045	40658045	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtgttactaaaacgtgggCagccccctccaccgtcctgc	9	15	0	0	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	TNRC6B	NM_001024843	exon7	c.C433A	p.Q145K	CGTGGGCAGCCCC		175	6	0.03	219	2	0.0091324201		195		3	0	0				A	40658045	C	A	40658045	3	1	100	1	0	0	0	0	1	0	0	0	16400	711	25	2	460	2	TNRC6B	22	40658045	Missense_Mutation	SNP	C	TCGA-VF-A8AD-01A-11D-A435-10	10241415	40658045	10646521	75	7433											
RIBC1	158787	broad.mit.edu	37	chrX	53455230	53455230	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atccttgctcaccacccccaGgtaccagccaggtgcagtat	8	16	1	0	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	RIBC1	NM_144968	exon5	c.200-1G>T	.	CCCCCAGGTACCA		106	4	0.04	101	0	0		20		0	0					T	53455230	G	T	53455230	5	4	100	1	0	0	0	0	0	0	1	0	13401	1014	35	3	209	3	RIBC1	23	53455230	Splice_Site	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10		53455230	101815330	76	7434											
EDA2R	60401	broad.mit.edu	37	chrX	65819573	65819573	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtcgtcctcgaggataGggttaagtggctgggtctga	16	7	1	1	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	EDA2R	NM_001242310	exon6	c.C710A	p.P237H	AGGATAGGGTTAA		170	5	0.03	147	0	0		30		4	0	0				T	65819573	G	T	65819573	3	4	100	1	0	0	0	0	1	0	0	0	4930	1000	35	3	250	3	EDA2R	23	65819573	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	12364343	65819573	89450987	77	7435											
EDA	1896	broad.mit.edu	37	chrX	69176947	69176947	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaagtaggcgtgttcgccGcaataaaagaagcaaaagca	11	7	0	2	rs132630314		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	EDA	NM_001399	exon2	c.G467A	p.R156H	TTCGCCGCAATAA		398	6	0.02	347	0	0		61		1	0	0				A	69176947	G	A	69176947	3	1	100	1	0	0	0	0	1	0	0	0	4929	1087	38	1	574	1	EDA	23	69176947	Missense_Mutation	SNP	G	TCGA-VF-A8AD-01A-11D-A435-10	3357374	69176947	86093613	78	7436											
MIB2	142678	mdanderson.org	37	chr1	1562341	1562341	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaccggcccgaggaggatgCcaacctggacgtggccgagc	15	14	0	0	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_080875	exon10	c.C1547T	p.A516V	AGGATGCCAACCT		32	3	0.09	35	0	0				26	0	0				T	1562341	C	T	1562341	3	4	101	1	0	0	0	0	1	0	0	0	9615	739	26	2	1585	2	MIB2	1	1562341	Missense_Mutation	SNP	C	TCGA-VF-A8AE-01A-11D-A435-10		1562341	247688280	1	7437											
HSPG2	3339	mdanderson.org	37	chr1	22202511	22202511	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctgggtcactgtgaagcGcagctctcctccataggagg	12	13	3	1	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	HSPG2,NS,carcinoma,+1,1	HSPG2	NM_005529	exon24	c.C3028A	p.R1010S	TGAAGCGCAGCTC		47	3	0.06	53	0	0		1	1	0	0					T	22202511	G	T	22202511	3	4	101	1	0	0	0	0	1	0	0	0	7473	1087	38	1	10443	1	HSPG2	1	22202511	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	20640170	22202511	227048110	2	7438											
AIM1L	55057	mdanderson.org	37	chr1	26669371	26669371	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tctggctcttcgtacagcacCcagctgtgggcacagagatt	11	12	2	1	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001039775	exon5	c.G3078T	p.W1026C	CAGCACCCAGCTG		43	3	0.07	48	0	0				0	0					A	26669371	C	A	26669371	3	1	101	1	0	0	0	0	1	0	0	0	428	638	22	3		3	AIM1L	1	26669371	Missense_Mutation	SNP	C	TCGA-VF-A8AE-01A-11D-A435-10	4466860	26669371	222581250	3	7439											
MANEAL	149175	mdanderson.org	37	chr1	38260364	38260364	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcccgggaccccgaagtGctgcgggagcatatgaccca	13	14	0	1	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001113482	exon1	c.G510T	p.V170V	CGAAGTGCTGCGG		45	3	0.07	30	0	0				4	0	0				T	38260364	G	T	38260364	2	4	101	1	0	0	0	0	0	0	0	1	9271	1306	46	2		2	MANEAL	1	38260364	Silent	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	11590993	38260364	210990257	4	7440											
ANKRD35	148741	hgsc.bcm.edu;broad.mit.edu	37	chr1	145561847	145561847	+	Frame_Shift_Del	DEL	C	C	-													aaaggatgctgcccggggggCtttgtcaagaccggtcatgg					novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	ANKRD35	NM_144698	exon10	c.1534delG	p.A512fs	GGGGGGCTTTGTC		160	11	0.07	184	0	0		96		0	0					-	145561847	C	-	145561847	7	5	101	1	0	1	0	1	0	0	0	0	659	797	28	0	1573	0	ANKRD35	1	145561847	Frame_Shift_Del	DEL	C	TCGA-VF-A8AE-01A-11D-A435-10	107301483	145561847	103688774	5	7441											
OR10K1	391109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	158435624	158435624	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgtcccagaagaagacCatttctttcctgggctgtgc	10	12	1	3	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	OR10K1,NS,carcinoma,0,1	OR10K1	NM_001004473	exon1	c.C273A	p.T91T	GAAGACCATTTCT		174	11	0.06	175	0	0		0	1	0	0					A	158435624	C	A	158435624	2	1	101	1	0	0	0	0	0	0	0	1	10960	581	21	3		3	OR10K1	1	158435624	Silent	SNP	C	TCGA-VF-A8AE-01A-11D-A435-10	12873777	158435624	90814997	6	7442											
CEP170	9859	broad.mit.edu;mdanderson.org	37	chr1	243354757	243354757	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtacttcttcatttgcagctGcagattgttcctcaacttgc	7	11	3	1	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	CEP170	NM_001042405	exon8	c.C671T	p.A224V	GCAGCTGCAGATT		46	4	0.09	68	0	0		153		2	0	0				A	243354757	G	A	243354757	3	1	101	1	0	0	0	0	1	0	0	0	3272	1319	46	2	4165	2	CEP170	1	243354757	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	84919133	243354757	5895864	7	7443											
ANKRD36B	57730	broad.mit.edu	37	chr2	98192550	98192550	+	RNA	DEL	T	T	-													aattcattatcatgtgactaTtaaaaaaatacaacataata					rs370632971		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	.	.	.	.	TGACTATTAAAAA		10	4	0.4	5	0	0				0	0					-	98192550	T	-	98192550	6	5	101	0	1	1	0	1	0	0	0	0	660	1508	52	0		0	ANKRD36B	2	98192550	RNA	DEL	T	TCGA-VF-A8AE-01A-11D-A435-10		98192550	145006823	8	7444											
CPS1	1373	broad.mit.edu	37	chr2	211507237	211507237	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaatttgattggtgtgctGtctctagtatccgcacactg	11	8	1	1	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	CPS1	NM_001122633	exon26	c.G3007T	p.V1003F	TGTGCTGTCTCTA		163	5	0.03	160	0	0		485		3	0	0				T	211507237	G	T	211507237	3	4	101	1	0	0	0	0	1	0	0	0	3846	1377	48	3	3109	3	CPS1	2	211507237	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	113314687	211507237	31692136	9	7445											
SNED1	25992	mdanderson.org	37	chr2	241979822	241979822	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccttcaagggacttcgctGtgagacaggtaactggccaa	12	11	1	1	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001080437	exon8	c.G1265T	p.C422F	TTCGCTGTGAGAC		47	3	0.06	47	0	0				0	0					T	241979822	G	T	241979822	3	4	101	1	0	0	0	0	1	0	0	0	14898	1377	48	3	1295	3	SNED1	2	241979822	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	30472585	241979822	1219551	10	7446											
IGSF11	152404	broad.mit.edu	37	chr3	118623632	118623632	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccagctattagtccaatGttcctgggctgggctgcaaa	11	11	0	0	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	IGSF11	NM_001015887	exon6	c.C717A	p.N239K	TCCAATGTTCCTG		341	4	0.01	389	0	0		122		0	0					T	118623632	G	T	118623632	3	4	101	1	0	0	0	0	1	0	0	0	7641	1368	48	3	586	3	IGSF11	3	118623632	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10		118623632	79398798	11	7447											
MFSD7	84179	mdanderson.org	37	chr4	676590	676590	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtccagtcaagtggatccTccccctgctggcaggtggac	12	14	1	0	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_032219	exon9	c.A1241G	p.E414G	GGATCCTCCCCCT		39	3	0.08	47	0	0				12	0	0				C	676590	T	C	676590	3	2	101	1	0	0	0	0	1	0	0	0	9586	1551	54	4	446	4	MFSD7	4	676590	Missense_Mutation	SNP	T	TCGA-VF-A8AE-01A-11D-A435-10		676590	190477686	12	7448											
RBM46	166863	broad.mit.edu	37	chr4	155720331	155720331	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgctaacaaagaagagagCcacccaaaaactctaggcaa	7	10	1	2	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	RBM46	NM_144979	exon4	c.C1017T	p.S339S	AGAGAGCCACCCA		254	5	0.02	291	1	0.0034364261		76		3	0	0				T	155720331	C	T	155720331	2	4	101	1	0	0	0	0	0	0	0	1	13191	738	26	2		2	RBM46	4	155720331	Silent	SNP	C	TCGA-VF-A8AE-01A-11D-A435-10	155043741	155720331	35433945	13	7449											
BEND3	57673	mdanderson.org	37	chr6	107390550	107390550	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagagcagctgcacgtagtgGcggatgagcttgatgcggga	17	7	0	3	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001080450	exon5	c.C1845A	p.R615R	GTAGTGGCGGATG		42	3	0.07	54	0	0				4	0	0				T	107390550	G	T	107390550	2	4	101	1	0	0	0	0	0	0	0	1	1397	1190	42	2		2	BEND3	6	107390550	Silent	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10		107390550	63724517	14	7450											
GPC2	221914	mdanderson.org	37	chr7	99769823	99769823	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggccctggagcttatcagCcaggatcaggagaccatctt	13	11	3	1	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_152742	exon6	c.G910A	p.A304T	TATCAGCCAGGAT		45	3	0.07	53	0	0				26	0	0				T	99769823	C	T	99769823	3	4	101	1	0	0	0	0	1	0	0	0	6637	739	26	2	849	2	GPC2	7	99769823	Missense_Mutation	SNP	C	TCGA-VF-A8AE-01A-11D-A435-10		99769823	59368840	15	7451											
GIGYF1	64599	mdanderson.org	37	chr7	100279560	100279560	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctccccggggccgagtttGgtgctgtggttggcctggaa	16	12	0	0	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_022574	exon23	c.C2982A	p.T994T	GAGTTTGGTGCTG		38	3	0.08	33	0	0				120	0	0				T	100279560	G	T	100279560	2	4	101	1	0	0	0	0	0	0	0	1	6418	1335	47	3		3	GIGYF1	7	100279560	Silent	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	509737	100279560	58859103	16	7452											
KCND2	3751	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	120385930	120385930	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtccttcactgtcttcaCaacaaggagtcaccagcacc	6	15	4	0	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	KCND2	NM_012281	exon5	c.C1564A	p.Q522K	TCTTCACAACAAG		235	22	0.09	240	1	0.0041666667		194		0	0					A	120385930	C	A	120385930	3	1	101	1	0	0	0	0	1	0	0	0	8062	479	17	3	1582	3	KCND2	7	120385930	Missense_Mutation	SNP	C	TCGA-VF-A8AE-01A-11D-A435-10	20106370	120385930	38752733	17	7453											
SGK223	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	8234017	8234017	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcttcctctatccggcaCtgacgactccaggtgcctgc	8	16	3	1	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001080826	exon2	c.G1902A	p.Q634Q	CCGGCACTGACGA		151	10	0.07	135	0	0				1	0	0				T	8234017	C	T	8234017	2	4	101	1	0	0	0	0	0	0	0	1	14263	564	20	3		3	SGK223	8	8234017	Silent	SNP	C	TCGA-VF-A8AE-01A-11D-A435-10		8234017	138130005	18	7454											
RP1L1	94137	bcgsc.ca	37	chr8	10465990	10465990	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcctctggggcctctacaTcttctgactctggctgggcc	11	15	5	1	rs200622636	bycluster;byfrequency	TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	RP1L1	NM_178857	exon4	c.A5618G	p.D1873G	TCTACATCTTCTG		87	14	0.16	79	0	0		453		0	0					C	10465990	T	C	10465990	3	2	101	1	0	0	0	0	1	0	0	0	13584	1435	50	4	1588	4	RP1L1	8	10465990	Missense_Mutation	SNP	T	TCGA-VF-A8AE-01A-11D-A435-10	2231973	10465990	135898032	19	7455											
PDE7A	5150	broad.mit.edu	37	chr8	66695027	66695027	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ataatgcttacctagcatacGaatgtataatgcagtctgat	7	7	1	1	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	PDE7A	NM_001242318	exon2	c.C190A	p.R64S	GCATACGAATGTA		377	6	0.02	324	1	0.0030864198		78		2	0	0				T	66695027	G	T	66695027	3	4	101	1	0	0	0	0	1	0	0	0	11697	1058	37	1	1338	1	PDE7A	8	66695027	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	56229037	66695027	79668995	20	7456											
CRH	1392	mdanderson.org	37	chr8	67089599	67089599	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaagggctgagggtgctgCggcgcctgccgagctcccgg	17	14	0	1	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_000756	exon2	c.G114A	p.P38P	GTGCTGCGGCGCC		15	2	0.13	12	0	0				0	0					T	67089599	C	T	67089599	2	4	101	1	0	0	0	0	0	0	0	1	3892	755	27	1		1	CRH	8	67089599	Silent	SNP	C	TCGA-VF-A8AE-01A-11D-A435-10	394572	67089599	79274423	21	7457											
FAM122A	116224	mdanderson.org	37	chr9	71395191	71395191	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctcaggaggtctaacagCgcccccctgatccacggcct	11	17	2	1	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_138333	exon1	c.C111A	p.S37R	TAACAGCGCCCCC		48	3	0.06	63	0	0				9	0	0				A	71395191	C	A	71395191	3	1	101	1	0	0	0	0	1	0	0	0	5450	767	27	1	113	1	FAM122A	9	71395191	Missense_Mutation	SNP	C	TCGA-VF-A8AE-01A-11D-A435-10		71395191	69818240	22	7458											
ZNF883	169834	broad.mit.edu	37	chr9	115760275	115760276	+	RNA	DEL	TT	TT	-													tttctccccagtatggactcTttgatgctgaataagattag					novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	TT	TT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001101338	exon5	c.264_265del	p.88_89del	GGACTCTTTGATG		136	9	0.07	152	0	0				4	0	0				-	115760276	TT	-	115760275	6	5	101	0	1	1	0	1	0	0	0	0	18240	1617	56	0		0	ZNF883	9	115760275	RNA	DEL	TT	TCGA-VF-A8AE-01A-11D-A435-10	44365084	115760275	25453156	23	7459											
NTNG2	84628	broad.mit.edu	37	chr9	135073687	135073687	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tatgtccgcccgccgggcccGcgacatgtcatcctccagcg	11	18	1	0	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	NTNG2,NS,carcinoma,-1,1	NTNG2	NM_032536	exon3	c.G548A	p.R183H	GGGCCCGCGACAT		64	3	0.05	58	0	0		66	1	1	0	0				A	135073687	G	A	135073687	3	1	101	1	0	0	0	0	1	0	0	0	10752	1087	38	1	554	1	NTNG2	9	135073687	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	19313412	135073687	6139744	24	7460											
NOTCH1	4851	mdanderson.org	37	chr9	139412617	139412617	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cactcatccacgtcctggctGcaggccgggcccgtgtaccc	11	18	1	0	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_017617	exon7	c.C1227A	p.C409X	CTGGCTGCAGGCC		39	3	0.08	41	0	0				0	0					T	139412617	G	T	139412617	4	4	101	1	0	0	0	0	0	1	0	0	10593	1311	46	2	6552	2	NOTCH1	9	139412617	Nonsense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	4338930	139412617	1800814	25	7461											
NPFFR1	64106	mdanderson.org	37	chr10	72015064	72015064	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgaagaaggccagccagtgCgcgaaggggaaggcgtagac	17	8	0	3	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_022146	exon4	c.G942A	p.A314A	CCAGTGCGCGAAG		28	3	0.11	37	0	0				0	0					T	72015064	C	T	72015064	2	4	101	1	0	0	0	0	0	0	0	1	10623	755	27	1		1	NPFFR1	10	72015064	Silent	SNP	C	TCGA-VF-A8AE-01A-11D-A435-10		72015064	63519683	26	7462											
PDCD11	22984	broad.mit.edu	37	chr10	105174894	105174894	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agaagtaccacatcggggatGaggtcaagtgccgggtgagc	16	8	1	3	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	PDCD11	NM_014976	exon12	c.G1504T	p.E502X	GGGGATGAGGTCA		286	6	0.02	330	0	0		160		5	0	0				T	105174894	G	T	105174894	4	4	101	1	0	0	0	0	0	1	0	0	11663	1291	45	3	1546	3	PDCD11	10	105174894	Nonsense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	33159830	105174894	30359853	27	7463											
DUSP5	1847	hgsc.bcm.edu	37	chr10	112270021	112270021	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcctccctcctgccaagGggaggcagcaggctcttcac	11	17	2	0	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_004419	exon4	c.G992T	p.G331V	GCCAAGGGGAGGC		90	5	0.06	113	0	0				15	0	0				T	112270021	G	T	112270021	3	4	101	1	0	0	0	0	1	0	0	0	4854	1232	43	3	1006	3	DUSP5	10	112270021	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	7095127	112270021	23264726	28	7464											
NRAP	4892	hgsc.bcm.edu	37	chr10	115356933	115356933	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatactgtctggttttttaCggtacttggtctataagata	9	5	2	2	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	NRAP,uveal_tract,malignant_melanoma,-1,1	NRAP	NM_001261463	exon37	c.G4343A	p.R1448H	TTTTTACGGTACT		85	4	0.05	99	0	0		-1	1	0	0					T	115356933	C	T	115356933	3	4	101	1	0	0	0	0	1	0	0	0	10685	536	19	1	873	1	NRAP	10	115356933	Missense_Mutation	SNP	C	TCGA-VF-A8AE-01A-11D-A435-10	3086912	115356933	20177814	29	7465											
PHF21A	51317	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	46001326	46001326	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttacctgtgaagcagtcagGttgggagaggctgcagctga	15	7	1	3	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	PHF21A	NM_016621	exon6	c.C345T	p.N115N	AGTCAGGTTGGGA		96	17	0.18	119	2	0.0168067227		107		7	3	0.43				A	46001326	G	A	46001326	2	1	101	1	0	0	0	0	0	0	0	1	11880	1252	44	3		3	PHF21A	11	46001326	Silent	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10		46001326	89005190	30	7466											
DAK	26007	mdanderson.org	37	chr11	61113960	61113960	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctccgggccatcttggaGgtcttgcagagctagggtgt	14	10	2	1	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_015533	exon18	c.G1713T	p.E571D	CTTGGAGGTCTTG		17	2	0.12	24	0	0				44	0	0				T	61113960	G	T	61113960	3	4	101	1	0	0	0	0	1	0	0	0	4252	991	35	3	1779	3	DAK	11	61113960	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	15112634	61113960	73892556	31	7467											
NXF1	10482	broad.mit.edu;mdanderson.org	37	chr11	62568854	62568854	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agctgccatacagcttctgcGattcaggacaacgtcaatgt	9	11	3	0	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	NXF1,mucosal,malignant_melanoma,0,1	NXF1	NM_006362	exon8	c.C745A	p.R249S	TTCTGCGATTCAG		45	3	0.07	60	0	0		67	1	44	0	0				T	62568854	G	T	62568854	3	4	101	1	0	0	0	0	1	0	0	0	10829	1058	37	1	1225	1	NXF1	11	62568854	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	1454894	62568854	72437662	32	7468											
LRP5	4041	mdanderson.org	37	chr11	68115598	68115598	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcaagaagctgtactggacGgactcagagaccaaccgcat	12	11	1	2	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_002335	exon2	c.G375A	p.T125T	CTGGACGGACTCA		51	3	0.06	72	0	0				0	0					A	68115598	G	A	68115598	2	1	101	1	0	0	0	0	0	0	0	1	9004	1103	39	1		1	LRP5	11	68115598	Silent	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	5546744	68115598	66890918	33	7469											
FUT4	2526	mdanderson.org	37	chr11	94278020	94278020	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgtgcttttccaccaccgcGacctcgtgaaggggcccccc	10	19	0	1	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_002033	exon1	c.G721T	p.D241Y	CACCGCGACCTCG		25	2	0.08	30	0	0				4	0	0				T	94278020	G	T	94278020	3	4	101	1	0	0	0	0	1	0	0	0	6140	1058	37	1	723	1	FUT4	11	94278020	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	26162422	94278020	40728496	34	7470											
TRAPPC4	51399	mdanderson.org	37	chr11	118889660	118889660	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtgtgttggttgctttcgGccagcgggacggcatccgag	17	10	0	0	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_016146	exon1	c.G155T	p.G52V	CTTTCGGCCAGCG		44	3	0.07	54	0	0				154	0	0				T	118889660	G	T	118889660	3	4	101	1	0	0	0	0	1	0	0	0	16521	1203	42	2	157	2	TRAPPC4	11	118889660	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	24611640	118889660	16116856	35	7471											
ROBO3	64221	mdanderson.org	37	chr11	124749826	124749826	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgtgcccctggcagcccagCgggtgctccacccagatggt	13	17	0	1	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	ROBO3_ENST00000397801,mouth,carcinoma,-1,1	ROBO3_ENST00000397801	NM_022370	exon26	c.C3940T	p.R1314W	GCCCAGCGGGTGC		30	3	0.1	65	0	0		-1	1	12	0	0				T	124749826	C	T	124749826	3	4	101	1	0	0	0	0	1	0	0	0	13566	759	27	1	4042	1	ROBO3	11	124749826	Missense_Mutation	SNP	C	TCGA-VF-A8AE-01A-11D-A435-10	5860166	124749826	10256690	36	7472											
ETV6	2120	mdanderson.org	37	chr12	11905470	11905470	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catgttccagtgcctcgagcGctcaggatggaggaagactc	13	11	1	1	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001987	exon2	c.G120T	p.A40A	TCGAGCGCTCAGG		45	3	0.07	37	0	0				1	0	0				T	11905470	G	T	11905470	2	4	101	1	0	0	0	0	0	0	0	1	5311	1074	38	1		1	ETV6	12	11905470	Silent	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10		11905470	121946425	37	7473											
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	31632964	31632964	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	actacttgccaatgagtccaTactgcaggaagatgaagcat	9	9	0	3	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	DENND5B,NS,carcinoma,+2,1	DENND5B	NM_144973	exon3	c.A463T	p.M155L	AGTCCATACTGCA		168	7	0.04	183	0	0		2	1	1	1	1				A	31632964	T	A	31632964	3	1	101	1	0	0	0	0	1	0	0	0	4465	1406	49	5	3437	5	DENND5B	12	31632964	Missense_Mutation	SNP	T	TCGA-VF-A8AE-01A-11D-A435-10	19727494	31632964	102218931	38	7474											
RAPGEF3	10411	mdanderson.org	37	chr12	48141538	48141538	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcagtgtggagcatggagCcatacagggccacccactgg	15	11	1	0	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001098531	exon14	c.G1430A	p.G477D	ATGGAGCCATACA		30	3	0.1	31	0	0				1	0	0				T	48141538	C	T	48141538	3	4	101	1	0	0	0	0	1	0	0	0	13096	739	26	2	1401	2	RAPGEF3	12	48141538	Missense_Mutation	SNP	C	TCGA-VF-A8AE-01A-11D-A435-10	16508574	48141538	85710357	39	7475											
RARG	5916	ucsc.edu	37	chr12	53609563	53609563	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatctcctctgagctggtgCtctgtgtctccaccgctggg	11	15	4	1	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	RARG	NM_000966	exon4	c.G200A	p.S67N	CTGGTGCTCTGTG		38	4	0.11	34	0	0		53		4	0	0				T	53609563	C	T	53609563	3	4	101	1	0	0	0	0	1	0	0	0	13105	797	28	2	1192	2	RARG	12	53609563	Missense_Mutation	SNP	C	TCGA-VF-A8AE-01A-11D-A435-10	5468025	53609563	80242332	40	7476											
DLGAP5	9787	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr14	55655696	55655696	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cttttctggaacaagcccttGagatgtctcatctaattcaa	6	10	4	1	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_014750	exon2	c.C202A	p.Q68K	GCCCTTGAGATGT		232	12	0.05	228	0	0				11	3	0.27				T	55655696	G	T	55655696	3	4	101	1	0	0	0	0	1	0	0	0	4591	1299	45	3	2505	3	DLGAP5	14	55655696	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10		55655696	51693844	41	7477											
PSMC1	5700	mdanderson.org	37	chr14	90726472	90726472	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actcaaggacaagaaaaagaAatatgaacctcctgtaccaa	6	9	1	3	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_002802	exon3	c.A71G	p.K24R	AAAAGAAATATGA		14	2	0.14	13	0	0				6	0	0				G	90726472	A	G	90726472	3	3	101	1	0	0	0	0	1	0	0	0	12733	14	1	4	81	4	PSMC1	14	90726472	Missense_Mutation	SNP	A	TCGA-VF-A8AE-01A-11D-A435-10	35070776	90726472	16623068	42	7478											
WDR76	79968	broad.mit.edu	37	chr15	44134649	44134649	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcctttagaaatgacttctGaaaatcaagaagacaacaat	7	7	2	5	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	WDR76	NM_024908	exon6	c.G769T	p.E257X	ACTTCTGAAAATC		465	7	0.02	453	1	0.0022075055		34		4	0	0				T	44134649	G	T	44134649	4	4	101	1	0	0	0	0	0	1	0	0	17385	1291	45	3	791	3	WDR76	15	44134649	Nonsense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10		44134649	58396743	43	7479											
USP3	9960	broad.mit.edu	37	chr15	63852125	63852125	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaggaatgggaaaacagcAggaaggcggacataccacac	12	8	0	0	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	USP3	NM_006537	exon7	c.A603G	p.A201A	AACAGCAGGAAGG		300	4	0.01	269	0	0		37		4	0	0				G	63852125	A	G	63852125	2	3	101	1	0	0	0	0	0	0	0	1	17119	175	7	4		4	USP3	15	63852125	Silent	SNP	A	TCGA-VF-A8AE-01A-11D-A435-10	19717476	63852125	38679267	44	7480											
IFT140	9742	broad.mit.edu	37	chr16	1574556	1574556	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccgggcccgtggtaccttGcacaggcggatggcattctt	13	14	1	0	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	IFT140	NM_014714	exon24	c.C3138A	p.C1046X	TACCTTGCACAGG		52	4	0.08	73	0	0		128		0	0					T	1574556	G	T	1574556	4	4	101	1	0	0	0	0	0	1	0	0	7599	1311	46	2	1282	2	IFT140	16	1574556	Nonsense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10		1574556	88780197	45	7481											
KATNB1	10300	mdanderson.org	37	chr16	57787863	57787863	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctttcctctgcaggtcggaCgccaccccggagaagtgagc	12	14	2	2	rs143811277	bycluster	TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	KATNB1,rectum,carcinoma,0,1	KATNB1	NM_005886	exon13	c.C1184T	p.T395M	GTCGGACGCCACC		55	4	0.07	55	0	0	0	0	1	38	0	0				T	57787863	C	T	57787863	3	4	101	1	0	0	0	0	1	0	0	0	8030	536	19	1	1230	1	KATNB1	16	57787863	Missense_Mutation	SNP	C	TCGA-VF-A8AE-01A-11D-A435-10	56213307	57787863	32566890	46	7482											
PSKH1	5681	bcgsc.ca	37	chr16	67942635	67942635	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgccagcctcgctggagagGatgccctcgtgtccgtgatg	14	13	0	2	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	PSKH1	.	.	.	.	GGAGAGGATGCCC		73	5	0.07	69	0	0		28		4	0	0				T	67942635	G	T	67942635	3	4	101	1	0	0	0	0	1	0	0	0	12712	1189	41	3		3	PSKH1	16	67942635	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	10154772	67942635	22412118	47	7483											
MLYCD	23417	broad.mit.edu	37	chr16	83949014	83949014	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgggccccaacagcacctccTacctcggctccaagatcatc	7	19	1	1	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	MLYCD	NM_012213	exon5	c.T1402C	p.Y468H	ACCTCCTACCTCG		98	4	0.04	114	0	0		27		14	0	0				C	83949014	T	C	83949014	3	2	101	1	0	0	0	0	1	0	0	0	9685	1522	53	4	1420	4	MLYCD	16	83949014	Missense_Mutation	SNP	T	TCGA-VF-A8AE-01A-11D-A435-10	16006379	83949014	6405739	48	7484											
FAM101B	359845	broad.mit.edu	37	chr17	295726	295726	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccagggggagagacgctGgactcttcaaggacagagaa	16	8	2	2	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	FAM101B	.	.	.	.	GACGCTGGACTCT		372	4	0.01	438	2	0.00456621		19		2	0	0				T	295726	G	T	295726	3	4	101	1	0	0	0	0	1	0	0	0	5412	1335	47	3	437	3	FAM101B	17	295726	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10		295726	80899484	49	7485											
DNAH9	1770	mdanderson.org	37	chr17	11502151	11502151	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accgggcccgagcctccaggGcccgacagcttccgcggcgc	14	19	0	0	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001372	exon1	c.G336T	p.G112G	TCCAGGGCCCGAC		18	3	0.17	12	0	0				0	0					T	11502151	G	T	11502151	2	4	101	1	0	0	0	0	0	0	0	1	4635	1190	42	2		2	DNAH9	17	11502151	Silent	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	11206425	11502151	69693059	50	7486											
AP2B1	163	mdanderson.org	37	chr17	33984625	33984625	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtgactttagcactgatGcaggtgacagccctgttggc	12	9	0	3	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001030006	exon14	c.G1804T	p.A602S	ACTGATGCAGGTG		92	5	0.05	143	0	0				34	0	0				T	33984625	G	T	33984625	3	4	101	1	0	0	0	0	1	0	0	0	737	1319	46	2	1854	2	AP2B1	17	33984625	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	22482474	33984625	47210585	51	7487											
CD300C	10871	mdanderson.org	37	chr17	72537829	72537829	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catgctcaggagcaggggcaGctccaagaggaccaggagca	15	11	1	1	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_006678	exon4	c.C574A	p.L192M	GGGGCAGCTCCAA		39	3	0.08	50	0	0				6	0	0				T	72537829	G	T	72537829	3	4	101	1	0	0	0	0	1	0	0	0	3019	962	34	2	104	2	CD300C	17	72537829	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	38553204	72537829	8657381	52	7488											
ICT1	3396	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	73016470	73016470	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtggatcgcggagcccgtgCggcagaagatagccatcacg	15	11	1	2	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	ICT1,medulla,primitive_neuroectodermal_tumour-medulloblastoma,0,1	ICT1	NM_001545	exon4	c.C346T	p.R116W	CCCGTGCGGCAGA		149	10	0.07	166	0	0		0	1	68	7	0.1				T	73016470	C	T	73016470	3	4	101	1	0	0	0	0	1	0	0	0	7531	759	27	1	360	1	ICT1	17	73016470	Missense_Mutation	SNP	C	TCGA-VF-A8AE-01A-11D-A435-10	478641	73016470	8178740	53	7489											
TRIM65	201292	mdanderson.org	37	chr17	73888874	73888874	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgcgcagctctagtagctGgccttcggcctgggtggcct	14	13	1	0	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001256124	exon2	c.C472A	p.Q158K	GTAGCTGGCCTTC		28	4	0.14	23	0	0				8	0	0				T	73888874	G	T	73888874	3	4	101	1	0	0	0	0	1	0	0	0	16599	1357	47	3	1101	3	TRIM65	17	73888874	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	872404	73888874	7306336	54	7490											
AP3D1	8943	broad.mit.edu	37	chr19	2116651	2116651	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgacggccggtgcttgggacGccgctgctcctcctcgtgga	15	15	0	0	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	AP3D1,NS,carcinoma,+1,1	AP3D1	NM_001261826	exon17	c.C1954A	p.R652S	TGGGACGCCGCTG		83	4	0.05	95	0	0		81	1	26	0	0				T	2116651	G	T	2116651	3	4	101	1	0	0	0	0	1	0	0	0	742	1087	38	1	1721	1	AP3D1	19	2116651	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10		2116651	57012332	55	7491											
TMIGD2	126259	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr19	4292623	4292623	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcccactttggggaacccTtttggcctcggctgctgggt	12	13	1	0	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_144615	exon5	c.A822G	p.K274K	GAACCCTTTTGGC		93	4	0.04	81	0	0				16	0	0				C	4292623	T	C	4292623	2	2	101	1	0	0	0	0	0	0	0	1	16290	1606	56	4		4	TMIGD2	19	4292623	Silent	SNP	T	TCGA-VF-A8AE-01A-11D-A435-10	2175972	4292623	54836360	56	7492											
PTPRS	5802	broad.mit.edu	37	chr19	5212058	5212058	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaggcatagaggctgcgtGcgggcacttctgtgttgcca	15	9	1	1	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	PTPRS	NM_002850	exon32	c.C4973A	p.A1658E	CTGCGTGCGGGCA		54	3	0.06	69	0	0		169		13	0	0				T	5212058	G	T	5212058	3	4	101	1	0	0	0	0	1	0	0	0	12862	1319	46	2	901	2	PTPRS	19	5212058	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	919435	5212058	53916925	57	7493											
EVI5L	115704	mdanderson.org	37	chr19	7927945	7927945	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcagcgcattgccgagctgGagatccaggtgatcggcggg	18	10	0	2	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001159944	exon17	c.G2035T	p.E679X	GAGCTGGAGATCC		13	2	0.15	16	0	0				14	0	0				T	7927945	G	T	7927945	4	4	101	1	0	0	0	0	0	1	0	0	5318	1175	41	3	2101	3	EVI5L	19	7927945	Nonsense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	2715887	7927945	51201038	58	7494											
CCDC105	126402	mdanderson.org	37	chr19	15122038	15122038	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcgcacgcgcgtggagcgcGcctcaccgccgcccgcctcg	14	21	1	0	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_173482	exon1	c.G401T	p.R134L	GAGCGCGCCTCAC		23	2	0.09	35	1	0.0285714286				0	0					T	15122038	G	T	15122038	3	4	101	1	0	0	0	0	1	0	0	0	2758	1087	38	1	403	1	CCDC105	19	15122038	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	7194093	15122038	44006945	59	7495											
FAM187B	148109	mdanderson.org	37	chr19	35719549	35719549	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaccccagtgccggggcaGcaaagtggagcagcagccac	14	13	0	1	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_152481	exon1	c.C35A	p.A12D	GGGGCAGCAAAGT		39	3	0.08	62	0	0				0	0					T	35719549	G	T	35719549	3	4	101	1	0	0	0	0	1	0	0	0	5543	971	34	2	1082	2	FAM187B	19	35719549	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	20597511	35719549	23409434	60	7496											
TMEM147	10430	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	36038332	36038332	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccctgtatgtcgccgttGtcaatgtgcactcctaggct	11	12	1	0	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	TMEM147	NM_032635	exon7	c.G658T	p.V220F	GCCGTTGTCAATG		72	6	0.08	88	0	0		13		347	97	0.28				T	36038332	G	T	36038332	3	4	101	1	0	0	0	0	1	0	0	0	16120	1377	48	3	684	3	TMEM147	19	36038332	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	318783	36038332	23090651	61	7497											
ZNF585A	199704	broad.mit.edu	37	chr19	37643731	37643731	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaggccttcccacactcaGtacatatggaagatttctct	6	11	2	1	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	ZNF585A	NM_199126	exon6	c.C905A	p.T302N	CACTCAGTACATA		144	5	0.03	109	0	0		117		0	0					T	37643731	G	T	37643731	3	4	101	1	0	0	0	0	1	0	0	0	18073	1029	36	3	1243	3	ZNF585A	19	37643731	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	1605399	37643731	21485252	62	7498											
PSG6	5675	mdanderson.org	37	chr19	43411800	43411800	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttcacattgatagggtcCtgtttcatttctcgtgacac	7	9	3	2	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_002782	exon4	c.G913T	p.G305X	AGGGTCCTGTTTC		66	4	0.06	51	0	0				0	0					A	43411800	C	A	43411800	4	1	101	1	0	0	0	0	0	1	0	0	12707	690	24	3	445	3	PSG6	19	43411800	Nonsense_Mutation	SNP	C	TCGA-VF-A8AE-01A-11D-A435-10	5768069	43411800	15717183	63	7499											
NLRP9	338321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	56223293	56223293	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaggcgatgagtgctgcggCgatgtcgtcgcagcaggcac	17	11	0	1	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_176820	exon8	c.G2716A	p.A906T	CTGCGGCGATGTC		128	8	0.06	147	0	0				486	93	0.19				T	56223293	C	T	56223293	3	4	101	1	0	0	0	0	1	0	0	0	10530	768	27	1	267	1	NLRP9	19	56223293	Missense_Mutation	SNP	C	TCGA-VF-A8AE-01A-11D-A435-10	12811493	56223293	2905690	64	7500											
NCOA6	23054	broad.mit.edu	37	chr20	33345723	33345723	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgttgctgttgttgCtgctgctgctgctgctgctg	14	10	0	0	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	NCOA6	NM_014071	exon7	c.G828A	p.Q276Q	TTGTTGCTGCTGC		82	5	0.06	81	2	0.024691358		219		0	0					T	33345723	C	T	33345723	2	4	101	1	0	0	0	0	0	0	0	1	10279	796	28	2		2	NCOA6	20	33345723	Silent	SNP	C	TCGA-VF-A8AE-01A-11D-A435-10		33345723	29679797	65	7501											
COL9A3	1299	mdanderson.org	37	chr20	61461161	61461161	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgcggtgaggctggccaccGgggctcagcggtgagtgcag	20	11	1	2	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001853	exon22	c.G1151A	p.R384Q	GCCACCGGGGCTC		44	3	0.07	40	0	0				6	0	0				A	61461161	G	A	61461161	3	1	101	1	0	0	0	0	1	0	0	0	3732	1116	39	1	1237	1	COL9A3	20	61461161	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	28115438	61461161	1564359	66	7502											
NUDT10	170685	broad.mit.edu	37	chrX	51076095	51076095	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggaccccaagcacagaaCgtacgtgtatgtactgactg	10	12	0	2	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	NUDT10	NM_153183	exon2	c.C278A	p.T93K	ACAGAACGTACGT		358	6	0.02	331	1	0.003021148		28		8	0	0				A	51076095	C	A	51076095	3	1	101	1	0	0	0	0	1	0	0	0	10773	536	19	1	280	1	NUDT10	23	51076095	Missense_Mutation	SNP	C	TCGA-VF-A8AE-01A-11D-A435-10		51076095	104194465	67	7503											
ZNF711	7552	mdanderson.org	37	chrX	84510318	84510318	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaccatattgttgtttcaGttcctgaagctgttttagtt	9	6	1	2	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_021998	exon4	c.G133T	p.V45F	GTTTCAGTTCCTG		126	5	0.04	151	0	0				0	0					T	84510318	G	T	84510318	3	4	101	1	0	0	0	0	1	0	0	0	18171	1029	36	3	139	3	ZNF711	23	84510318	Missense_Mutation	SNP	G	TCGA-VF-A8AE-01A-11D-A435-10	33434223	84510318	70760242	68	7504											
PRAMEF8	441871	bcgsc.ca;mdanderson.org	37	chr1	12980150	12980150	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggacttaaggcagcccaagAtcattgtgttctgcaccgtc	11	11	2	1	rs141480481	bycluster;by1000genomes	TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_001012276	exon4	c.A1342G	p.I448V	CCCAAGATCATTG		318	24	0.08	366	0	0				0	0					G	12980150	A	G	12980150	3	3	102	1	0	0	0	0	1	0	0	0	12490	333	12	4	1352	4	PRAMEF8	1	12980150	Missense_Mutation	SNP	A	TCGA-W4-A7U2-01A-11D-A435-10		12980150	236270471	1	7505											
OR10X1	128367	bcgsc.ca	37	chr1	158549420	158549421	+	Missense_Mutation	DNP	CG	CG	TA													atcttggggacgatggtcagCgtatagcaggtctcagagaa					novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	CG	CG					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	OR10X1,face,carcinoma,-1,1	OR10X1	NM_001004477	exon1	c.C269T	p.T90I	GGTCAGCGTATAG		151	7	0.05	126	1	0.0079365079		96	1	0	0					TA	158549421	CG	TA	158549420	3	4	102	1	0	0	0	0	1	0	0	0	10969	755	27	1	705	1	OR10X1	1	158549420	Missense_Mutation	DNP	CG	TCGA-W4-A7U2-01A-11D-A435-10	145569270	158549420	90701201	2	7506											
UAP1	6675	ucsc.edu	37	chr1	162549362	162549362	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgatgggaaaattattttGgaagagaagaacaaagtttc	10	2	0	3	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	UAP1	NM_003115	exon4	c.G630T	p.L210F	TATTTTGGAAGAG		43	4	0.09	51	0	0		47		98	0	0				T	162549362	G	T	162549362	3	4	102	1	0	0	0	0	1	0	0	0	16885	1339	47	3	640	3	UAP1	1	162549362	Missense_Mutation	SNP	G	TCGA-W4-A7U2-01A-11D-A435-10	3999942	162549362	86701259	3	7507											
MFF	56947	hgsc.bcm.edu	37	chr2	228194321	228194321	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttattctttcttttttacaGctggaaaagcagtgtccgtg	8	7	2	0	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	.	.	.	.	TTTACAGCTGGAA		129	8	0.06	109	0	0				4	0	0				T	228194321	G	T	228194321	5	4	102	1	0	0	0	0	0	0	1	0	9568	985	34	2		2	MFF	2	228194321	Splice_Site	SNP	G	TCGA-W4-A7U2-01A-11D-A435-10		228194321	15005052	4	7508											
MFF	56947	bcgsc.ca	37	chr2	228194480	228194481	+	Missense_Mutation	DNP	AG	AG	TT													aaatgagtaaaggaacaagcAgtgacacatcactaggaagg					novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	AG	AG					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	MFF	NM_020194	exon3	c.G20T	p.S7F	ACAAGCAGTGACA		339	29	0.09	285	2	0.0070175439		48		28	0	0				TT	228194481	AG	TT	228194480	3	4	102	1	0	0	0	0	1	0	0	0	9568	188	7	5	21	5	MFF	2	228194480	Missense_Mutation	DNP	AG	TCGA-W4-A7U2-01A-11D-A435-10	159	228194480	15004893	5	7509											
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	37340359	37340359	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtaaaaacactggaaacaCtccagcaaagagtgaagcgt	9	9	0	2	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_001172713	exon9	c.C916G	p.L306V	GAAACACTCCAGC		253	50	0.2	285	0	0				134	41	0.31				G	37340359	C	G	37340359	3	3	102	1	0	0	0	0	1	0	0	0	6596	565	20	5	950	5	GOLGA4	3	37340359	Missense_Mutation	SNP	C	TCGA-W4-A7U2-01A-11D-A435-10		37340359	160682071	6	7510											
ITIH4	3700	hgsc.bcm.edu	37	chr3	52852482	52852482	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ctggccttgggggcaccttcGattttcatattcatgacacg	10	11	2	1	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_002218	exon18	c.C2148A	p.I716I	ACCTTCGATTTTC		119	5	0.04	96	0	0				26	0	0				T	52852482	G	T	52852482	2	4	102	1	0	0	0	0	0	0	0	1	7949	1048	37	1		1	ITIH4	3	52852482	Silent	SNP	G	TCGA-W4-A7U2-01A-11D-A435-10	15512123	52852482	145169948	7	7511											
PCDHB4	56131	ucsc.edu;bcgsc.ca	37	chr5	140502343	140502344	+	Missense_Mutation	DNP	CC	CC	TT													tgcaggtcctggaaaacagcCccctagactctccaattgtt					novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	CC	CC					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	PCDHB4	NM_018938	exon1	c.C764T	p.P255F	AACAGCCCCCTAG		75	8	0.11	125	1	0.008		177		0	0					TT	140502344	CC	TT	140502343	3	4	102	1	0	0	0	0	1	0	0	0	11590	623	22	3	765	3	PCDHB4	5	140502343	Missense_Mutation	DNP	CC	TCGA-W4-A7U2-01A-11D-A435-10		140502343	40412917	8	7512											
FLT4	2324	hgsc.bcm.edu	37	chr5	180048756	180048756	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgagcagaagcgggttcccGtgcgcatcgtgcagcgtgga	16	11	0	1	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_182925	exon13	c.C1806T	p.H602H	GTTCCCGTGCGCA		73	4	0.05	85	0	0				6	0	0				A	180048756	G	A	180048756	2	1	102	1	0	0	0	0	0	0	0	1	5976	1136	40	1		1	FLT4	5	180048756	Silent	SNP	G	TCGA-W4-A7U2-01A-11D-A435-10	39546413	180048756	866504	9	7513											
DEK	7913	bcgsc.ca	37	chr6	18264096	18264096	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttcctcctcctcctcctcCtcgtcgtcctcgtcctcttc	3	21	1	0	rs147127829	bycluster;byfrequency;by1000genomes	TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	DEK	NM_003472	exon2	c.G123C	p.E41D	CTCCTCCTCGTCG		157	8	0.05	130	1	0.0076923077		31		79	0	0				G	18264096	C	G	18264096	3	3	102	1	0	0	0	0	1	0	0	0	4452	680	24	5	1044	5	DEK	6	18264096	Missense_Mutation	SNP	C	TCGA-W4-A7U2-01A-11D-A435-10		18264096	152850971	10	7514											
ZKSCAN3	80317	bcgsc.ca	37	chr6	28331127	28331128	+	Missense_Mutation	DNP	AA	AA	GC													gaggatgctgcagagaagatAaagtggtagcttctaggctt					novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	AA	AA					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	ZKSCAN3,NS,other,-1,1	ZKSCAN3	NM_024493	exon4	c.A599C	p.K200A	GAAGATAAAGTGG		71	5	0.07	88	0	0		50	1	34	0	0				GC	28331128	AA	GC	28331127	3	3	102	1	0	0	0	0	1	0	0	0	17745	363	13	4	608	4	ZKSCAN3	6	28331127	Missense_Mutation	DNP	AA	TCGA-W4-A7U2-01A-11D-A435-10	10067031	28331127	142783940	11	7515											
HLA-C	3107	bcgsc.ca	37	chr6	31236853	31236854	+	Missense_Mutation	DNP	GT	GT	AC													aggaacgcagacacattcagGtgcctttgcagaaagagatg					novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	GT	GT					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	HLA-C	.	.	.	p.T397V	ATTCAGGTGCCTT		174	17	0.1	176	0	0		92		3197	0	0				AC	31236854	GT	AC	31236853	3	1	102	1	0	0	0	0	1	0	0	0	7237	1276	44	3		3	HLA-C	6	31236853	Missense_Mutation	DNP	GT	TCGA-W4-A7U2-01A-11D-A435-10	2905726	31236853	139878214	12	7516											
HLA-DQA1	3117	bcgsc.ca	37	chr6	32610008	32610009	+	Missense_Mutation	DNP	CC	CC	TG													gtggagcactggggcctggaCcagcctcttctgaaacactg					novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	CC	CC					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	HLA-DQA1	NM_002122	exon3	c.C592G	p.Q198E	CCTGGACCAGCCT		468	15	0.03	511	0	0		52		669	0	0				TG	32610009	CC	TG	32610008	3	4	102	1	0	0	0	0	1	0	0	0	7244	506	18	3	601	3	HLA-DQA1	6	32610008	Missense_Mutation	DNP	CC	TCGA-W4-A7U2-01A-11D-A435-10	1373155	32610008	138505059	13	7517											
MICAL1	64780	bcgsc.ca	37	chr6	109767930	109767931	+	Missense_Mutation	DNP	GC	GC	TT													ggcctctatcgctgccttccGctttgtggtctgtctggggc					rs35260632		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	GC	GC					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	MICAL1	NM_022765	exon18	c.G2272A	p.A777K	CCTTCCGCTTTGT		187	8	0.04	230	0	0		79		457	0	0				TT	109767931	GC	TT	109767930	3	4	102	1	0	0	0	0	1	0	0	0	9616	1087	38	1	962	1	MICAL1	6	109767930	Missense_Mutation	DNP	GC	TCGA-W4-A7U2-01A-11D-A435-10	77157922	109767930	61347137	14	7518											
ZNF804B	219578	bcgsc.ca	37	chr7	88964226	88964227	+	Missense_Mutation	DNP	CC	CC	AG													ataaattgattccctgcagtCctcatttggaatttgaagat					novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	CC	CC					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	ZNF804B,NS,carcinoma,0,1	ZNF804B	NM_181646	exon4	c.C1931G	p.P644S	TGCAGTCCTCATT		186	7	0.04	173	0	0		322	1	0	0					AG	88964227	CC	AG	88964226	3	1	102	1	0	0	0	0	1	0	0	0	18219	855	30	3	1944	3	ZNF804B	7	88964226	Missense_Mutation	DNP	CC	TCGA-W4-A7U2-01A-11D-A435-10		88964226	70174437	15	7519											
LOC286238	0	bcgsc.ca	37	chr9	91262387	91262387	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccacagggaagcatgtcccGtgtctgccactcatataagc	10	13	2	0	rs28550932	bycluster;byfrequency;by1000genomes	TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_001100111	exon2	c.C256T	p.R86W	TGTCCCGTGTCTG		92	7	0.08	101	0	0				0	0					A	91262387	G	A	91262387	1	1	102	0	1	0	0	0	0	0	0	0	8918	1144	40	1		1	LOC286238	9	91262387	RNA	SNP	G	TCGA-W4-A7U2-01A-11D-A435-10		91262387	49951044	16	7520											
AUH	549	bcgsc.ca	37	chr9	94060353	94060353	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcaattgttggtactggaaGattagctgaaatggaaagaa	12	3	0	3	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	AUH	NM_001698	exon5	c.C511A	p.L171I	CTGGAAGATTAGC		78	5	0.06	91	0	0		32		80	0	0				T	94060353	G	T	94060353	3	4	102	1	0	0	0	0	1	0	0	0	1217	942	33	3	532	3	AUH	9	94060353	Missense_Mutation	SNP	G	TCGA-W4-A7U2-01A-11D-A435-10	2797966	94060353	47153078	17	7521											
LAMC3	10319	bcgsc.ca	37	chr9	133901819	133901820	+	Missense_Mutation	DNP	CC	CC	AG													ccagaagacctacggccggcCcgagggccagtacctgcgcc					novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	CC	CC					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	LAMC3	NM_006059	exon2	c.C522G	p.P174Q	GCCGGCCCGAGGG		163	9	0.06	193	0	0		167		12	0	0				AG	133901820	CC	AG	133901819	3	1	102	1	0	0	0	0	1	0	0	0	8654	623	22	3	527	3	LAMC3	9	133901819	Missense_Mutation	DNP	CC	TCGA-W4-A7U2-01A-11D-A435-10	39841466	133901819	7311612	18	7522											
MYO3A	53904	ucsc.edu;bcgsc.ca	37	chr10	26357747	26357748	+	Missense_Mutation	DNP	CG	CG	TA													tattccagagatcagatctaCgtctatgtgggagacatact					novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	CG	CG					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	MYO3A	NM_017433	exon12	c.G1105A	p.V369I	GATCTACGTCTAT		86	9	0.1	84	0	0		371		6	0	0				TA	26357748	CG	TA	26357747	3	4	102	1	0	0	0	0	1	0	0	0	10123	547	19	1	1142	1	MYO3A	10	26357747	Missense_Mutation	DNP	CG	TCGA-W4-A7U2-01A-11D-A435-10		26357747	109177000	19	7523											
LOC653486	147199	bcgsc.ca	37	chr11	194441	194441	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caagtgctgggcagtcaggaCggtgcctaagtggacctcag	15	10	2	0	rs61997072	bycluster;byfrequency;by1000genomes	TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_001097610	exon3	c.C279T	p.D93D	TCAGGACGGTGCC		86	6	0.07	124	0	0				1	0	0				T	194441	C	T	194441	2	4	102	1	0	0	0	0	0	0	0	1	8929	535	19	1		1	LOC653486	11	194441	Silent	SNP	C	TCGA-W4-A7U2-01A-11D-A435-10		194441	134812075	20	7524											
FIBP	9158	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	65651461	65651461	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctcagtcatgatacaggCgcaggaggcagccgcggagg	15	12	2	1	rs140853801	bycluster	TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	FIBP,colon,carcinoma,0,1	FIBP	NM_198897	exon10	c.G1079A	p.R360H	TACAGGCGCAGGA		75	10	0.13	89	0	0	0	0	1	219	42	0.19				T	65651461	C	T	65651461	3	4	102	1	0	0	0	0	1	0	0	0	5918	768	27	1	19	1	FIBP	11	65651461	Missense_Mutation	SNP	C	TCGA-W4-A7U2-01A-11D-A435-10	65457020	65651461	69355055	21	7525											
PIWIL4	143689	bcgsc.ca	37	chr11	94322352	94322353	+	Missense_Mutation	DNP	AG	AG	TA													gaagcccacacacacctttcAgaagcgggatggcaccgaga					novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	AG	AG					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	PIWIL4	NM_152431	exon8	c.G981A	p.Q327L	CCTTTCAGAAGCG		47	5	0.11	88	0	0		70		15	0	0				TA	94322353	AG	TA	94322352	3	4	102	1	0	0	0	0	1	0	0	0	12007	188	7	5	1010	5	PIWIL4	11	94322352	Missense_Mutation	DNP	AG	TCGA-W4-A7U2-01A-11D-A435-10	28670891	94322352	40684164	22	7526											
SLC6A13	6540	ucsc.edu	37	chr12	351879	351879	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	caacacaatgatgtagtagaCgttgaggaggatgacgatca	12	6	1	4	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	SLC6A13,caecum,carcinoma,0,2	SLC6A13	NM_016615	exon4	c.G379T	p.V127F	AGTAGACGTTGAG		159	22	0.14	98	2	0.0204081633		62	2	0	0					A	351879	C	A	351879	3	1	102	1	0	0	0	0	1	0	0	0	14730	536	19	1	1477	1	SLC6A13	12	351879	Missense_Mutation	SNP	C	TCGA-W4-A7U2-01A-11D-A435-10		351879	133500016	23	7527											
PEX5	5830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	7354887	7354887	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcaggtgtccctggagtcCggtgcagggtcgggccgagc	20	11	0	0	rs140332077	bycluster;by1000genomes	TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_001131023	exon8	c.C738T	p.S246S	GGAGTCCGGTGCA		218	33	0.15	122	0	0	0			311	18	0.06				T	7354887	C	T	7354887	2	4	102	1	0	0	0	0	0	0	0	1	11795	639	23	1		1	PEX5	12	7354887	Silent	SNP	C	TCGA-W4-A7U2-01A-11D-A435-10	7003008	7354887	126497008	24	7528											
TAS2R19	259294	ucsc.edu	37	chr12	11174765	11174765	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acaaatcagaaataccaaggGccccaacagtatcaccagaa	6	12	2	2	rs199722277	bycluster	TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	TAS2R19	NM_176888	exon1	c.C406T	p.P136S	CCAAGGGCCCCAA		169	1	0.01	99	0	0		30		30	13	0.43				A	11174765	G	A	11174765	3	1	102	1	0	0	0	0	1	0	0	0	15626	1203	42	2	496	2	TAS2R19	12	11174765	Missense_Mutation	SNP	G	TCGA-W4-A7U2-01A-11D-A435-10	3819878	11174765	122677130	25	7529											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	25378562	25378562	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acttacctgtcttgtctttgCtgatgtttcaataaaaggaa	7	7	3	1	rs121913527		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	KRAS_ENST00000256078,colon,carcinoma,+1,137	KRAS_ENST00000256078	NM_004985	exon4	c.G436A	p.A146T	TCTTTGCTGATGT		134	26	0.19	74	1	0.0135135135		1	137	262	49	0.19				T	25378562	C	T	25378562	3	4	102	1	0	0	0	0	1	0	0	0	8480	797	28	2	262	2	KRAS	12	25378562	Missense_Mutation	SNP	C	TCGA-W4-A7U2-01A-11D-A435-10	14203797	25378562	108473333	26	7530											
SLC5A8	160728	hgsc.bcm.edu	37	chr12	101603313	101603313	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccagtttgtagaacaccGggaggaagacctccgcgctg	12	12	0	2	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	SLC5A8,colon,carcinoma,0,1	SLC5A8	NM_145913	exon1	c.C314A	p.P105Q	AACACCGGGAGGA		95	5	0.05	79	1	0.0126582278		0	1	0	0					T	101603313	G	T	101603313	3	4	102	1	0	0	0	0	1	0	0	0	14725	1116	39	1	1578	1	SLC5A8	12	101603313	Missense_Mutation	SNP	G	TCGA-W4-A7U2-01A-11D-A435-10	76224751	101603313	32248582	27	7531											
MYO16	23026	broad.mit.edu	37	chr13	109793111	109793111	+	Frame_Shift_Del	DEL	C	C	-													cggccgcccctgctggtgttCcccccgacccccgtcacctg					novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	MYO16	NM_001198950	exon32	c.4551delC	p.F1517fs	GGTGTTCCCCCCG		2242	13	0.01	101	0	0		285		7	0	0				-	109793111	C	-	109793111	7	5	102	1	0	1	0	1	0	0	0	0	10111	854	30	0	4607	0	MYO16	13	109793111	Frame_Shift_Del	DEL	C	TCGA-W4-A7U2-01A-11D-A435-10		109793111	5376767	28	7532											
POTEG	404785	bcgsc.ca;mdanderson.org	37	chr14	19566036	19566036	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccagttactttctgactaCaaagaaaaacagatgctaaa	6	8	1	3	rs8142076	bycluster;byfrequency	TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	POTEG	NM_001005356	exon6	c.C1080T	p.Y360Y	TGACTACAAAGAA		227	23	0.1	360	0	0		118		0	0					T	19566036	C	T	19566036	2	4	102	1	0	0	0	0	0	0	0	1	12312	489	17	3		3	POTEG	14	19566036	Silent	SNP	C	TCGA-W4-A7U2-01A-11D-A435-10		19566036	87783504	29	7533											
C15orf55	256646	hgsc.bcm.edu	37	chr15	34640735	34640735	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaggaggtcctgtggccacTctatccaagccttccctagg	11	13	1	0	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_175741	exon2	c.T582C	p.T194T	GGCCACTCTATCC		64	4	0.06	72	0	0				15	0	0				C	34640735	T	C	34640735	2	2	102	1	0	0	0	0	0	0	0	1	1809	1538	54	4		4	C15orf55	15	34640735	Silent	SNP	T	TCGA-W4-A7U2-01A-11D-A435-10		34640735	67890657	30	7534											
CCDC33	80125	ucsc.edu;bcgsc.ca	37	chr15	74623054	74623054	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agctggatatgaagaaactgAgggacagggtgcagcatttg	15	5	0	3	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	CCDC33	NM_025055	exon13	c.A1507G	p.R503G	AAACTGAGGGACA		33	4	0.12	28	0	0		160		0	0					G	74623054	A	G	74623054	3	3	102	1	0	0	0	0	1	0	0	0	2825	295	11	4	1630	4	CCDC33	15	74623054	Missense_Mutation	SNP	A	TCGA-W4-A7U2-01A-11D-A435-10	39982319	74623054	27908338	31	7535											
ITPRIPL2	162073	ucsc.edu	37	chr16	19126254	19126254	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gccttccgcggagacttcatCcaggtgggcagcgcctacga	13	14	1	1	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	ITPRIPL2	NM_001034841	exon1	c.C471T	p.I157I	CTTCATCCAGGTG		25	3	0.12	39	0	0		40		29	5	0.17				T	19126254	C	T	19126254	2	4	102	1	0	0	0	0	0	0	0	1	7968	845	30	3		3	ITPRIPL2	16	19126254	Silent	SNP	C	TCGA-W4-A7U2-01A-11D-A435-10		19126254	71228499	32	7536											
RAP1GAP2	23108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	2921439	2921439	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggggcatccctggcagcCtcagcgggggcatctcccac	15	15	2	0	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_015085	exon18	c.C1579T	p.L527F	GGCAGCCTCAGCG		79	16	0.2	106	0	0				47	27	0.57				T	2921439	C	T	2921439	3	4	102	1	0	0	0	0	1	0	0	0	13089	681	24	3	1649	3	RAP1GAP2	17	2921439	Missense_Mutation	SNP	C	TCGA-W4-A7U2-01A-11D-A435-10		2921439	78273771	33	7537											
FLII	2314	bcgsc.ca	37	chr17	18151320	18151320	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtagttgatctgtggcaGctccaggtagcccaagccca	11	12	1	1	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	FLII	NM_002018	exon19	c.C2218A	p.L740M	GTGGCAGCTCCAG		53	5	0.09	69	0	0		79		202	0	0				T	18151320	G	T	18151320	3	4	102	1	0	0	0	0	1	0	0	0	5957	962	34	2	1639	2	FLII	17	18151320	Missense_Mutation	SNP	G	TCGA-W4-A7U2-01A-11D-A435-10	15229881	18151320	63043890	34	7538											
SMCHD1	23347	ucsc.edu	37	chr18	2666989	2666989	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacacactggttaaaagtgGcatgtatgaatattatgcca	9	6	0	2	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	SMCHD1	NM_015295	exon3	c.G383T	p.G128V	AAAGTGGCATGTA		95	2	0.02	124	0	0		88		68	8	0.12	rescued with RNA-seq			T	2666989	G	T	2666989	3	4	102	1	0	0	0	0	1	0	0	0	14841	1203	42	2	393	2	SMCHD1	18	2666989	Missense_Mutation	SNP	G	TCGA-W4-A7U2-01A-11D-A435-10		2666989	75410259	35	7539											
SMCHD1	23347	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	2688481	2688483	+	In_Frame_Del	DEL	TCT	TCT	-													tgttgggggcaagcaagctgTcttctttgttggacaatcag					novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	TCT	TCT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	SMCHD1	NM_015295	exon6	c.727_729del	p.243_243del	AAGCTGTCTTCTT		89	10	0.11	116	0	0		88		104	0	0				-	2688483	TCT	-	2688481	7	5	102	1	0	1	0	1	0	0	0	0	14841	1667	58	0	750	0	SMCHD1	18	2688481	In_Frame_Del	DEL	TCT	TCGA-W4-A7U2-01A-11D-A435-10	21492	2688481	75388767	36	7540											
KCNG2	26251	bcgsc.ca	37	chr18	77623903	77623903	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcagcccgtgcgccttccGcgccatcgtggcgcttttgc	12	18	0	0	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	KCNG2	NM_012283	exon1	c.G236T	p.R79L	CCTTCCGCGCCAT		27	4	0.15	26	0	0		48		0	0					T	77623903	G	T	77623903	3	4	102	1	0	0	0	0	1	0	0	0	8071	1087	38	1	238	1	KCNG2	18	77623903	Missense_Mutation	SNP	G	TCGA-W4-A7U2-01A-11D-A435-10	74935422	77623903	453345	37	7541											
CAPNS1	826	bcgsc.ca	37	chr19	36640664	36640669	+	In_Frame_Del	DEL	GCTGGT	GCTGGT	-													ccctgggtgagggcaaagggGctggtgctcttggggttccc					novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	GCTGGT	GCTGGT					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	CAPNS1	.	.	.	.	AAAGGGGCTGGTG		102	6	0.06	115	0	0		19		1	0	0				-	36640669	GCTGGT	-	36640664	7	5	102	1	0	1	0	1	0	0	0	0	2651	1218	42	0		0	CAPNS1	19	36640664	In_Frame_Del	DEL	GCTGGT	TCGA-W4-A7U2-01A-11D-A435-10		36640664	22488319	38	7542											
RUVBL2	10856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	49502588	49502588	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acccccagacagccacaaccAaagtcccggagatccgtgat	8	16	0	3	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_006666	exon2	c.A25G	p.K9E	ACAACCAAAGTCC		204	34	0.17	206	0	0				384	133	0.35				G	49502588	A	G	49502588	3	3	102	1	0	0	0	0	1	0	0	0	13804	131	5	4	31	4	RUVBL2	19	49502588	Missense_Mutation	SNP	A	TCGA-W4-A7U2-01A-11D-A435-10	12861924	49502588	9626395	39	7543											
BAGE	85319	broad.mit.edu	37	chr21	11058613	11058614	+	RNA	INS	-	-	A													aaacctaaagatttttttttINSaaagcaaatagtaatatggt					rs377480117	bycluster	TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	.	.	.	.	TTTTTTTAAAGCA		6	2	0.33	8	0	0				0	0					A	11058614	-	A	11058613	6	5	102	0	1	1	1	0	0	0	0	0	1289	1769	61	0		0	BAGE	21	11058613	RNA	INS	-	TCGA-W4-A7U2-01A-11D-A435-10		11058613	37071282	40	7544											
TIAM1	7074	bcgsc.ca	37	chr21	32638549	32638550	+	Missense_Mutation	DNP	CC	CC	AT													caaatttgctccccggccccCcgtttgctgtcactccagag					novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	CC	CC					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	TIAM1	NM_003253	exon5	c.G739A	p.G247M	GGCCCCCCGTTTG		193	9	0.05	170	0	0		522		152	0	0				AT	32638550	CC	AT	32638549	3	1	102	1	0	0	0	0	1	0	0	0	15949	623	22	3	4135	3	TIAM1	21	32638549	Missense_Mutation	DNP	CC	TCGA-W4-A7U2-01A-11D-A435-10	21579936	32638549	15491346	41	7545											
ITSN1	6453	hgsc.bcm.edu;bcgsc.ca	37	chr21	35144472	35144491	+	Frame_Shift_Del	DEL	GCCCAGCTGGAGCGGGCGGA	GCCCAGCTGGAGCGGGCGGA	-													gcaaggagcaggagcgcctgGcccagctggagcgggcggag					novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	GCCCAGCTGGAGCGGGCGGA	GCCCAGCTGGAGCGGGCGGA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	ITSN1	NM_001001132	exon12	c.1149_1168del	p.383_390del	CGCCTGGCCCAGC		150	18	0.12	124	0	0		166		62	0	0				-	35144491	GCCCAGCTGGAGCGGGCGGA	-	35144472	7	5	102	1	0	1	0	1	0	0	0	0	7969	1203	42	0	1192	0	ITSN1	21	35144472	Frame_Shift_Del	DEL	GCCCAGCTGGAGCGGGCGGA	TCGA-W4-A7U2-01A-11D-A435-10	2505923	35144472	12985423	42	7546											
ITSN1	6453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	35147283	35147283	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgttcaagaatgataaaaaGcatcaactagaagggaaact	8	5	2	3	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_001001132	exon14	c.G1467C	p.K489N	TAAAAAGCATCAA		183	37	0.2	164	0	0				46	5	0.11				C	35147283	G	C	35147283	3	2	102	1	0	0	0	0	1	0	0	0	7969	962	34	5	1517	5	ITSN1	21	35147283	Missense_Mutation	SNP	G	TCGA-W4-A7U2-01A-11D-A435-10	2811	35147283	12982612	43	7547											
OR11H1	81061	bcgsc.ca;mdanderson.org	37	chr22	16449050	16449050	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagacccacaggtagagaagGccttatgtctcccagtgctt	11	11	1	2	rs78804300		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	OR11H1	NM_001005239	exon1	c.C755T	p.A252V	GAGAAGGCCTTAT		309	21	0.07	337	0	0		44		0	0					A	16449050	G	A	16449050	3	1	102	1	0	0	0	0	1	0	0	0	10973	1203	42	2	227	2	OR11H1	22	16449050	Missense_Mutation	SNP	G	TCGA-W4-A7U2-01A-11D-A435-10		16449050	34855516	44	7548											
CLDN5	7122	mdanderson.org	37	chr22	19511442	19511442	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggccacacgcgccttggCcgggcccggggccacgcagg	18	16	0	0	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_001130861	exon1	c.G592A	p.A198T	CCTTGGCCGGGCC		30	5	0.17	24	0	0				10	0	0				T	19511442	C	T	19511442	3	4	102	1	0	0	0	0	1	0	0	0	3511	739	26	2	323	2	CLDN5	22	19511442	Missense_Mutation	SNP	C	TCGA-W4-A7U2-01A-11D-A435-10	3062392	19511442	31793124	45	7549											
RIMBP3	85376	bcgsc.ca	37	chr22	20457060	20457060	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tggagctggcaccctctcttCacccccagagcttgtccttg	9	16	2	1	rs200551182	bycluster	TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	RIMBP3	NM_015672	exon1	c.G4242C	p.V1414V	TCTCTTCACCCCC		307	25	0.08	239	1	0.0041841004		42		5	0	0				G	20457060	C	G	20457060	2	3	102	1	0	0	0	0	0	0	0	1	13413	813	29	5		5	RIMBP3	22	20457060	Silent	SNP	C	TCGA-W4-A7U2-01A-11D-A435-10	945618	20457060	30847506	46	7550			1	14		3	3	782	N	T_G_C	7.624992e-07
RIMBP3	85376	bcgsc.ca;mdanderson.org	37	chr22	20457204	20457204	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgcatactgttggctggcGcccagctggggaggtgtgaa	17	8	0	1	rs364215	bycluster	TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	RIMBP3	NM_015672	exon1	c.C4098T	p.G1366G	GCTGGCGCCCAGC		375	23	0.06	289	1	0.0034602076		42		5	0	0				A	20457204	G	A	20457204	2	1	102	1	0	0	0	0	0	0	0	1	13413	1074	38	1		1	RIMBP3	22	20457204	Silent	SNP	G	TCGA-W4-A7U2-01A-11D-A435-10	144	20457204	30847362	47	7551			1	14		3	3	782	N	T_G_C	7.624992e-07
RIMBP3	85376	bcgsc.ca	37	chr22	20457841	20457841	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgccacgtgaggggcaccTgtagctgggagaattccaat	13	10	1	2	rs202034782	bycluster;byfrequency	TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	RIMBP3	NM_015672	exon1	c.A3461G	p.Q1154R	GGCACCTGTAGCT		837	30	0.04	783	0	0		42		1	0	0				C	20457841	T	C	20457841	3	2	102	1	0	0	0	0	1	0	0	0	13413	1580	55	4	1462	4	RIMBP3	22	20457841	Missense_Mutation	SNP	T	TCGA-W4-A7U2-01A-11D-A435-10	637	20457841	30846725	48	7552			1	14		3	3	782	N	T_G_C	7.624992e-07
TAZ	6901	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	153648387	153648387	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaggaatcgggcgcctgatTgctgagtgtcatctcaaccc	12	12	2	2	novel		TCGA-W4-A7U2-01A-11D-A435-10	TCGA-W4-A7U2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88f98c12-9f30-4071-861b-f66445d6d122	90d0d153-4618-406d-b803-64cda8a4ba9a	.	.	NM_000116	exon8	c.T600C	p.I200I	CCTGATTGCTGAG		223	22	0.1	149	0	0				38	3	0.08				C	153648387	T	C	153648387	2	2	102	1	0	0	0	0	0	0	0	1	15652	1800	63	4		4	TAZ	23	153648387	Silent	SNP	T	TCGA-W4-A7U2-01A-11D-A435-10		153648387	1622173	49	7553											
CCDC18	0	broad.mit.edu	37	chr1	93744309	93744310	+	RNA	INS	-	-	T													agtacattgaggaatgcaaaINStttttttttttttttaatga					novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	CCDC18	.	.	.	.	ATGCAAATTTTTT		6	3	0.5	8	0	0		93		0	0					T	93744310	-	T	93744309	6	5	103	0	1	1	1	0	0	0	0	0	2813	116	4	0		0	CCDC18	1	93744309	RNA	INS	-	TCGA-W4-A7U4-01A-12D-A435-10		93744309	155506312	1	7554											
IGSF3	3321	ucsc.edu;bcgsc.ca	37	chr1	117142641	117142641	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgttgttgtagttcttccGccacagctctgccacacact	9	13	2	0	rs76417519	bycluster;byfrequency	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	IGSF3	NM_001542	exon8	c.C2011T	p.R671W	TCTTCCGCCACAG		83	10	0.12	70	3	0.0428571429		294		49	0	0				A	117142641	G	A	117142641	3	1	103	1	0	0	0	0	1	0	0	0	7644	1086	38	1	1653	1	IGSF3	1	117142641	Missense_Mutation	SNP	G	TCGA-W4-A7U4-01A-12D-A435-10	23398332	117142641	132107980	2	7555											
HRNR	388697	bcgsc.ca	37	chr1	152188062	152188062	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaccatgttgcccatgggTagaggaatgacctgagctag	13	8	0	4	rs79940627	bycluster;byfrequency	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	HRNR	NM_001009931	exon3	c.A6043G	p.T2015A	CATGGGTAGAGGA		227	11	0.05	237	2	0.0084388186		403		0	0					C	152188062	T	C	152188062	3	2	103	1	0	0	0	0	1	0	0	0	7399	1638	57	4	2513	4	HRNR	1	152188062	Missense_Mutation	SNP	T	TCGA-W4-A7U4-01A-12D-A435-10	35045421	152188062	97062559	3	7556											
GYPC	2995	bcgsc.ca	37	chr2	127413734	127413734	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gtgtgacccaggtgccgcttCctctcgccgccgagggtcag	14	15	2	1	rs11542968	bycluster;byfrequency;by1000genomes	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	GYPC	.	.	.	.	CCGCTTCCTCTCG		29	4	0.14	25	0	0		27		3	0	0				G	127413734	C	G	127413734	3	3	103	1	0	0	0	0	1	0	0	0	6950	870	30	5		5	GYPC	2	127413734	Missense_Mutation	SNP	C	TCGA-W4-A7U4-01A-12D-A435-10		127413734	115785639	4	7557											
TLR1	7096	broad.mit.edu	37	chr4	38798148	38798148	+	Frame_Shift_Del	DEL	A	A	-													ggctgcccttaagttagcccAaaaaaggccacgtttgctct					novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	TLR1	NM_003263	exon4	c.2305delT	p.W769fs	TAGCCCAAAAAAG		164	7	0.04	178	0	0		70		10	0	0				-	38798148	A	-	38798148	7	5	103	1	0	1	0	1	0	0	0	0	16008	130	5	0	59	0	TLR1	4	38798148	Frame_Shift_Del	DEL	A	TCGA-W4-A7U4-01A-12D-A435-10		38798148	152356128	5	7558											
ITPR3	3710	hgsc.bcm.edu;mdanderson.org	37	chr6	33638140	33638140	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccgcatgtgcttggaccGccagtacttggccatcgacg	12	14	0	0	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_002224	exon19	c.G2228T	p.R743L	TGGACCGCCAGTA		60	4	0.07	89	0	0				58	0	0				T	33638140	G	T	33638140	3	4	103	1	0	0	0	0	1	0	0	0	7965	1087	38	1	2302	1	ITPR3	6	33638140	Missense_Mutation	SNP	G	TCGA-W4-A7U4-01A-12D-A435-10		33638140	137476927	6	7559											
CDCA2	157313	ucsc.edu	37	chr8	25364715	25364715	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	atggtcgaagtttacatttgGaaaaaaatggaaatcacaca	8	5	1	0	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	CDCA2,NS,carcinoma,0,3	CDCA2	NM_152562	exon15	c.G2533A	p.E845K	CATTTGGAAAAAA		124	3	0.02	76	0	0		78	3	106	17	0.16	rescued with RNA-seq			A	25364715	G	A	25364715	3	1	103	1	0	0	0	0	1	0	0	0	3108	1175	41	3	2587	3	CDCA2	8	25364715	Missense_Mutation	SNP	G	TCGA-W4-A7U4-01A-12D-A435-10		25364715	120999307	7	7560											
MUC6	4588	bcgsc.ca	37	chr11	1017900	1017900	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccatctgtgcatgggtaGgggtgatgactgtgtgagta	17	5	1	3	rs77920671	bycluster;byfrequency	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	MUC6	NM_005961	exon31	c.C4901A	p.P1634H	TGGGTAGGGGTGA		184	9	0.05	286	4	0.013986014		408		0	0					T	1017900	G	T	1017900	3	4	103	1	0	0	0	0	1	0	0	0	10027	1000	35	3	2430	3	MUC6	11	1017900	Missense_Mutation	SNP	G	TCGA-W4-A7U4-01A-12D-A435-10		1017900	133988616	8	7561											
MMP1	4312	mdanderson.org	37	chr11	102668807	102668807	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaacagcagcagcagcagtGgaggaaagctgtgcatactg	14	8	0	1	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_002421	exon1	c.C17A	p.P6Q	AGCAGTGGAGGAA		33	3	0.09	29	0	0				1	0	0				T	102668807	G	T	102668807	3	4	103	1	0	0	0	0	1	0	0	0	9695	1348	47	3	1432	3	MMP1	11	102668807	Missense_Mutation	SNP	G	TCGA-W4-A7U4-01A-12D-A435-10	101650907	102668807	32337709	9	7562											
NACA	4666	bcgsc.ca	37	chr12	57110530	57110530	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gaatgaggagctctttggggGatggggcccctttgtaagtg	17	6	1	1	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	NACA	.	.	.	.	TTGGGGGATGGGG		98	6	0.06	89	0	0		131		1	0	0				T	57110530	G	T	57110530	3	4	103	1	0	0	0	0	1	0	0	0	10180	1174	41	3	1480	3	NACA	12	57110530	Missense_Mutation	SNP	G	TCGA-W4-A7U4-01A-12D-A435-10		57110530	76741365	10	7563											
ZNF276	92822	hgsc.bcm.edu	37	chr16	89793728	89793728	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttccatcttcaacctcggatGatcgggtaaaagacgagttc	9	10	2	2	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_001113525	exon5	c.G1048T	p.D350Y	TCGGATGATCGGG		117	5	0.04	128	0	0				20	0	0				T	89793728	G	T	89793728	3	4	103	1	0	0	0	0	1	0	0	0	17868	1290	45	3	1066	3	ZNF276	16	89793728	Missense_Mutation	SNP	G	TCGA-W4-A7U4-01A-12D-A435-10		89793728	561025	11	7564											
ATCAY	85300	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	3909500	3909500	+	Frame_Shift_Del	DEL	T	T	-													gcaggtacgtcatcagcagcTtagagctcctggtggctgag					novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	ATCAY	NM_033064	exon7	c.663delC	p.S221fs	AGCAGCTTAGAGC		54	16	0.3	81	0	0		84		8	0	0				-	3909500	T	-	3909500	7	5	103	1	0	1	0	1	0	0	0	0	1076	1606	56	0	686	0	ATCAY	19	3909500	Frame_Shift_Del	DEL	T	TCGA-W4-A7U4-01A-12D-A435-10		3909500	55219483	12	7565											
B3GNT8	374907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	41932262	41932262	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggacatcagtatctgagcagCtggagacttggctgccacca	12	11	2	2	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_198540	exon3	c.G422C	p.S141T	GAGCAGCTGGAGA		68	23	0.34	113	0	0				3	0	0				G	41932262	C	G	41932262	3	3	103	1	0	0	0	0	1	0	0	0	1261	797	28	5	775	5	B3GNT8	19	41932262	Missense_Mutation	SNP	C	TCGA-W4-A7U4-01A-12D-A435-10	38022762	41932262	17196721	13	7566											
PSG7	5676	broad.mit.edu	37	chr19	43440069	43440070	+	RNA	INS	-	-	AA													acacacacacacacacaaacINSacacacacacacatataaaa					rs147024666	bycluster;by1000genomes;alternate_allele	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	CACAAACACACAC		12	5	0.42	9	0	0				0	0					AA	43440070	-	AA	43440069	6	5	103	0	1	1	1	0	0	0	0	0	12708	493	17	0		0	PSG7	19	43440069	RNA	INS	-	TCGA-W4-A7U4-01A-12D-A435-10	1507807	43440069	15688914	14	7567											
NECAB3	63941	mdanderson.org	37	chr20	32247749	32247749	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgacactcctcagggctcgGcgtcctgcccgccggctgcc	12	19	1	1	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_031231	exon7	c.C585A	p.R195R	GGCTCGGCGTCCT		36	3	0.08	31	0	0				41	1	0.02				T	32247749	G	T	32247749	2	4	103	1	0	0	0	0	0	0	0	1	10352	1190	42	2		2	NECAB3	20	32247749	Silent	SNP	G	TCGA-W4-A7U4-01A-12D-A435-10		32247749	30777771	15	7568											
ELMO2	63916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	45017782	45017782	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acgtcggcagagagcttggcCagctccttcatggcatccag	12	13	1	1	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_182764	exon6	c.G321A	p.L107L	CTTGGCCAGCTCC		94	19	0.2	64	0	0				35	8	0.23				T	45017782	C	T	45017782	2	4	103	1	0	0	0	0	0	0	0	1	5094	581	21	3		3	ELMO2	20	45017782	Silent	SNP	C	TCGA-W4-A7U4-01A-12D-A435-10	12770033	45017782	18007738	16	7569											
LIME1	54923	mdanderson.org	37	chr20	62369750	62369750	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggtcagcctggcggccagCcctgtggtggccgagtatgc	18	12	1	0	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_017806	exon5	c.C483T	p.S161S	GGCCAGCCCTGTG		26	3	0.12	25	0	0				44	0	0				T	62369750	C	T	62369750	2	4	103	1	0	0	0	0	0	0	0	1	8839	738	26	2		2	LIME1	20	62369750	Silent	SNP	C	TCGA-W4-A7U4-01A-12D-A435-10	17351968	62369750	655770	17	7570											
TCF20	6942	bcgsc.ca;mdanderson.org	37	chr22	42608414	42608414	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatgggttgctgctccaggGctggcattgccgcggtaaga	15	10	1	1	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	TCF20	NM_181492	exon1	c.C2898A	p.S966R	TCCAGGGCTGGCA		125	7	0.06	147	0	0		164		41	0	0				T	42608414	G	T	42608414	3	4	103	1	0	0	0	0	1	0	0	0	15749	1194	42	2	3022	2	TCF20	22	42608414	Missense_Mutation	SNP	G	TCGA-W4-A7U4-01A-12D-A435-10		42608414	8696152	18	7571											
MTHFR	4524	mdanderson.org	37	chr1	11854012	11854012	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccagcccacgatggggtcGgaggacggcttcccgttgat	14	14	0	1	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_005957	exon9	c.C1482A	p.S494S	GGGGTCGGAGGAC		34	3	0.09	46	0	0				21	0	0				T	11854012	G	T	11854012	2	4	104	1	0	0	0	0	0	0	0	1	9978	1103	39	1		1	MTHFR	1	11854012	Silent	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10		11854012	237396609	1	7572											
TMEM53	79639	broad.mit.edu	37	chr1	45120704	45120704	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagctccagcacgtagcGgtacagcatgacgccaccgt	12	14	0	1	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	TMEM53	NM_024587	exon3	c.C361A	p.R121S	CGTAGCGGTACAG		70	3	0.04	66	0	0		40		49	0	0				T	45120704	G	T	45120704	3	4	104	1	0	0	0	0	1	0	0	0	16238	1116	39	1	476	1	TMEM53	1	45120704	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	33266692	45120704	204129917	2	7573											
KCNN3	3782	hgsc.bcm.edu	37	chr1	154842235	154842236	+	In_Frame_Ins	INS	-	-	GCTGCTGCTGCTGCT													ctgctgctgctgctgctgctINSgctgctgaagctgcggaggc					rs66925179		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	KCNN3	NM_001204087	exon1	c.206_207insAGCAGCAGCAGCAGC	p.Q69delinsQQQQQQ	TGCTGCTGCTGCT		70	14	0.2	66	0	0		141		15	0	0				GCTGCTGCTGCTGCT	154842236	-	GCTGCTGCTGCTGCT	154842235	7	5	104	1	0	1	1	0	0	0	0	0	8123	1580	55	0	2043	0	KCNN3	1	154842235	In_Frame_Ins	INS	-	TCGA-WZ-A7V3-01A-11D-A435-10	109721531	154842235	94408386	3	7574											
PM20D1	148811	mdanderson.org	37	chr1	205814017	205814017	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaggagctccaaggcctgCagtaatgcctggggttcaga	14	10	1	1	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_152491	exon4	c.G498A	p.L166L	GGCCTGCAGTAAT		35	3	0.09	37	0	0				0	0					T	205814017	C	T	205814017	2	4	104	1	0	0	0	0	0	0	0	1	12175	697	25	2		2	PM20D1	1	205814017	Silent	SNP	C	TCGA-WZ-A7V3-01A-11D-A435-10	50971782	205814017	43436604	4	7575											
OR13G1	441933	mdanderson.org	37	chr1	247835618	247835618	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tagtaaagggtcaccactgtGagatgagatgagcatgttga	13	5	1	4	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	OR13G1,NS,malignant_melanoma,0,2	OR13G1	NM_001005487	exon1	c.C726A	p.L242L	CACTGTGAGATGA		68	4	0.06	105	0	0		0	2	0	0					T	247835618	G	T	247835618	2	4	104	1	0	0	0	0	0	0	0	1	10989	1277	45	3		3	OR13G1	1	247835618	Silent	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	42021601	247835618	1415003	5	7576											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	32690161	32690161	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggttctggtctagcccttgCaatttctcatgcttcacatt	7	11	4	0	rs368963586	alternate_allele	TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	BIRC6_ENST00000421745,NS,carcinoma,+2,2	BIRC6_ENST00000421745	NM_016252	exon26	c.C5285T	p.A1762V	CCCTTGCAATTTC		567	118	0.21	575	0	0		2	2	167	49	0.29				T	32690161	C	T	32690161	3	4	104	1	0	0	0	0	1	0	0	0	1437	710	25	2	5387	2	BIRC6	2	32690161	Missense_Mutation	SNP	C	TCGA-WZ-A7V3-01A-11D-A435-10		32690161	210509212	6	7577											
ABCG8	64241	mdanderson.org	37	chr2	44071743	44071743	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaggtcagagacctcaactAccaggtagaggcacgcctgg	14	11	2	2	rs4148211	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_022437	exon2	c.A161T	p.Y54F	TCAACTACCAGGT		48	2	0.04	58	0	0				0	0					T	44071743	A	T	44071743	3	4	104	1	0	0	0	0	1	0	0	0	72	391	14	5	167	5	ABCG8	2	44071743	Missense_Mutation	SNP	A	TCGA-WZ-A7V3-01A-11D-A435-10	11381582	44071743	199127630	7	7578											
SMPD4	55627	ucsc.edu	37	chr2	130910188	130910188	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atggcagaggcgtagaggacAtagcccagggtgagcagcag	17	8	0	3	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	SMPD4	NM_017951	exon20	c.T2541C	p.Y847Y	GAGGACATAGCCC		107	2	0.02	86	0	0		67		393	42	0.11	rescued with RNA-seq			G	130910188	A	G	130910188	2	3	104	1	0	0	0	0	0	0	0	1	14860	224	8	4		4	SMPD4	2	130910188	Silent	SNP	A	TCGA-WZ-A7V3-01A-11D-A435-10	86838445	130910188	112289185	8	7579											
ITGA4	3676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	182358131	182358131	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccgtgcagatgggatctcGtcaaccttctcacaggtaag	12	11	3	1	rs368002151		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_000885	exon11	c.G1233A	p.S411S	GATCTCGTCAACC		90	12	0.13	98	0	0				20	0	0				A	182358131	G	A	182358131	2	1	104	1	0	0	0	0	0	0	0	1	7921	1132	40	1		1	ITGA4	2	182358131	Silent	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	51447943	182358131	60841242	9	7580											
VILL	50853	mdanderson.org	37	chr3	38038598	38038598	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggaacagctttaataagGgtgacatcttcctgctggac	10	10	1	1	rs199511941	bycluster;by1000genomes;alternate_allele	TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_015873	exon5	c.G481T	p.G161C	AATAAGGGTGACA		39	3	0.08	81	0	0				1	0	0				T	38038598	G	T	38038598	3	4	104	1	0	0	0	0	1	0	0	0	17224	1232	43	3	499	3	VILL	3	38038598	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10		38038598	159983832	10	7581											
NBEAL2	23218	mdanderson.org	37	chr3	47039154	47039154	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcctggtgcagtgccagggGcctgccatcatcggggccct	15	14	1	0	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_015175	exon20	c.G2928T	p.G976G	CCAGGGGCCTGCC		36	3	0.08	76	1	0.0131578947				37	0	0				T	47039154	G	T	47039154	2	4	104	1	0	0	0	0	0	0	0	1	10236	1190	42	2		2	NBEAL2	3	47039154	Silent	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	9000556	47039154	150983276	11	7582											
DHX30	22907	bcgsc.ca	37	chr3	47887257	47887257	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtataacctggcctctttgcGtgagctgggtgagacccagc	13	11	1	2	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	DHX30	NM_138615	exon10	c.G1007T	p.R336L	CTTTGCGTGAGCT		51	4	0.08	112	0	0		101		183	0	0				T	47887257	G	T	47887257	3	4	104	1	0	0	0	0	1	0	0	0	4532	1145	40	1	1048	1	DHX30	3	47887257	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	848103	47887257	150135173	12	7583											
FAM194A	131831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	150396273	150396273	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgaaaatcaaatacaatgtCatcaattatctgtttttctg	4	6	5	1	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_152394	exon10	c.G1180T	p.D394Y	CAATGTCATCAAT		377	49	0.13	261	0	0				0	0					A	150396273	C	A	150396273	3	1	104	1	0	0	0	0	1	0	0	0	5557	826	29	3	831	3	FAM194A	3	150396273	Missense_Mutation	SNP	C	TCGA-WZ-A7V3-01A-11D-A435-10	102509016	150396273	47626157	13	7584											
ZNF827	152485	mdanderson.org	37	chr4	146823705	146823705	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggaaaaggactcaaatcGcatggtctcctcagtcctgg	12	10	3	0	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	ZNF827,NS,carcinoma,+1,4	ZNF827	NM_178835	exon2	c.C706T	p.R236X	CAAATCGCATGGT		32	3	0.09	48	0	0		1	4	5	0	0				A	146823705	G	A	146823705	4	1	104	1	0	0	0	0	0	1	0	0	18226	1095	38	1	2575	1	ZNF827	4	146823705	Nonsense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10		146823705	44330571	14	7585											
PPWD1	23398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	64867809	64867809	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatatttttgacaaactccAtacatcacctcttactcaga	2	12	4	2	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_015342	exon5	c.A665G	p.H222R	AACTCCATACATC		195	68	0.35	186	0	0				133	79	0.59				G	64867809	A	G	64867809	3	3	104	1	0	0	0	0	1	0	0	0	12462	217	8	4	683	4	PPWD1	5	64867809	Missense_Mutation	SNP	A	TCGA-WZ-A7V3-01A-11D-A435-10		64867809	116047451	15	7586											
SGTB	54557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	65004355	65004355	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcttttcccacatcttcagGcactgagtttgaaaggggca	10	10	2	2	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	SGTB,trunk,malignant_melanoma,0,1	SGTB	NM_019072	exon4	c.C235T	p.P79S	CTTCAGGCACTGA		72	30	0.42	100	0	0		0	1	39	20	0.51				A	65004355	G	A	65004355	3	1	104	1	0	0	0	0	1	0	0	0	14279	1203	42	2	711	2	SGTB	5	65004355	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	136546	65004355	115910905	16	7587											
C5orf56	441108	mdanderson.org	37	chr5	131811383	131811383	+	RNA	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cctctgcagcctgcacagccGggcctttggactcctggatg	12	15	1	0	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	.	.	.	.	ACAGCCGGGCCTT		40	3	0.08	67	0	0				25	0	0				C	131811383	G	C	131811383	1	2	104	0	1	0	0	0	0	0	0	0	2327	1131	39	5		5	C5orf56	5	131811383	RNA	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	66807028	131811383	49103877	17	7588											
FBXW11	23291	mdanderson.org	37	chr5	171303295	171303295	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagacatacttactttgatGgtcctgtcaccagaggcaga	10	10	1	4	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_012300	exon8	c.C1152A	p.T384T	TTTGATGGTCCTG		42	3	0.07	55	0	0				95	0	0				T	171303295	G	T	171303295	2	4	104	1	0	0	0	0	0	0	0	1	5796	1335	47	3		3	FBXW11	5	171303295	Silent	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	39491912	171303295	9611965	18	7589											
PPT2	9374	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	32123529	32123533	+	Frame_Shift_Del	DEL	CCTCT	CCTCT	-													aacgtggattctttcatctcCctctcctctccacagatggg					novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	CCTCT	CCTCT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	PPT2	NM_138717	exon4	c.419_423del	p.140_141del	CATCTCCCTCTCC		145	20	0.14	187	0	0		19		89	0	0				-	32123533	CCTCT	-	32123529	7	5	104	1	0	1	0	1	0	0	0	0	12460	610	22	0	434	0	PPT2	6	32123529	Frame_Shift_Del	DEL	CCTCT	TCGA-WZ-A7V3-01A-11D-A435-10		32123529	138991538	19	7590											
RNF8	9025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	37336599	37336599	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaaatcacaggggaaaggtGaagtggccagtacaccctct	12	9	2	2	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_003958	exon3	c.G580A	p.E194K	AAAGGTGAAGTGG		121	25	0.21	141	0	0				91	35	0.38				A	37336599	G	A	37336599	3	1	104	1	0	0	0	0	1	0	0	0	13551	1291	45	3	590	3	RNF8	6	37336599	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	5213070	37336599	133778468	20	7591											
MCM3	4172	mdanderson.org	37	chr6	52141891	52141891	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggtctgtggtgacagcaGccgtcagacccactccagag	12	14	2	3	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_002388	exon8	c.C1274T	p.A425V	ACAGCAGCCGTCA		28	3	0.11	55	0	0				214	0	0				A	52141891	G	A	52141891	3	1	104	1	0	0	0	0	1	0	0	0	9436	971	34	2	1327	2	MCM3	6	52141891	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	14805292	52141891	118973176	21	7592											
KIAA1586	57691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	56919177	56919177	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgacagaaaccatgaagataTttttaattactttgatttgc	6	5	0	5	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_020931	exon4	c.T1880A	p.I627N	AAGATATTTTTAA		202	37	0.18	237	0	0				17	5	0.29				A	56919177	T	A	56919177	3	1	104	1	0	0	0	0	1	0	0	0	8286	1493	52	5	1894	5	KIAA1586	6	56919177	Missense_Mutation	SNP	T	TCGA-WZ-A7V3-01A-11D-A435-10	4777286	56919177	114195890	22	7593											
EYS	346007	mdanderson.org	37	chr6	65016865	65016865	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactactgctattttacctGcaattgttaatgtgatagtt	6	7	1	1	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_001142800	exon30	c.C6189A	p.C2063X	TTACCTGCAATTG		39	3	0.08	58	0	0				0	0					T	65016865	G	T	65016865	4	4	104	1	0	0	0	0	0	1	0	0	5360	1311	46	2	3301	2	EYS	6	65016865	Nonsense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	8097688	65016865	106098202	23	7594											
HECA	51696	mdanderson.org	37	chr6	139487973	139487973	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgggccagtccccacccaCgggctactccatcctctctc	7	22	1	0	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_016217	exon2	c.C824T	p.T275M	CACCCACGGGCTA		29	3	0.1	57	0	0				40	0	0				T	139487973	C	T	139487973	3	4	104	1	0	0	0	0	1	0	0	0	7078	536	19	1	830	1	HECA	6	139487973	Missense_Mutation	SNP	C	TCGA-WZ-A7V3-01A-11D-A435-10	74471108	139487973	31627094	24	7595											
RSPH10B	222967	broad.mit.edu	37	chr7	5983086	5983086	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagtagagcgtccgctgttGctcacggaataaattgccta	11	9	1	2	rs142698648	bycluster;byfrequency	TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	RSPH10B	NM_173565	exon15	c.C1627T	p.Q543X	GCTGTTGCTCACG		1410	98	0.07	1154	2	0.0017331023		28		12	0	0				A	5983086	G	A	5983086	4	1	104	1	0	0	0	0	0	1	0	0	13754	1328	46	2	1013	2	RSPH10B	7	5983086	Nonsense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10		5983086	153155577	25	7596											
SLC12A9	56996	ucsc.edu;bcgsc.ca	37	chr7	100458762	100458762	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttggcccttgcccagctGgtgctcctggctgggaagct	13	14	1	0	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	SLC12A9	NM_001267812	exon10	c.G1221T	p.L407L	CCAGCTGGTGCTC		39	4	0.1	72	0	0		81		44	0	0				T	100458762	G	T	100458762	2	4	104	1	0	0	0	0	0	0	0	1	14444	1335	47	3		3	SLC12A9	7	100458762	Silent	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	94475676	100458762	58679901	26	7597											
PLXNA4	91584	broad.mit.edu	37	chr7	131817901	131817901	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atccgggactgctcagccagGtatgcgttcatgtcttggtc	12	11	3	0	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	PLXNA4	NM_020911	exon31	c.C5496A	p.Y1832X	AGCCAGGTATGCG		59	3	0.05	95	0	0		873		2	0	0				T	131817901	G	T	131817901	4	4	104	1	0	0	0	0	0	1	0	0	12169	1256	44	3	196	3	PLXNA4	7	131817901	Nonsense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	31359139	131817901	27320762	27	7598											
ABCF2	10061	mdanderson.org	37	chr7	150913107	150913107	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcggatcatgccatctgtGggtagtagctaggaagaaaa	12	6	2	1	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	ABCF2,NS,carcinoma,-1,1	ABCF2	NM_007189	exon12	c.C1347A	p.P449P	ATCTGTGGGTAGT		44	3	0.07	64	0	0		-1	1	133	0	0				T	150913107	G	T	150913107	2	4	104	1	0	0	0	0	0	0	0	1	66	1335	47	3		3	ABCF2	7	150913107	Silent	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	19095206	150913107	8225556	28	7599											
MNX1	3110	bcgsc.ca	37	chr7	156802391	156802391	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaggcaggatcatgcccgcGgtggacgcgcgcagccactg	15	13	1	0	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	MNX1	NM_005515	exon1	c.C654T	p.T218T	GCCCGCGGTGGAC		29	4	0.14	43	0	0		17		49	0	0				A	156802391	G	A	156802391	2	1	104	1	0	0	0	0	0	0	0	1	9727	1103	39	1		1	MNX1	7	156802391	Silent	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	5889284	156802391	2336272	29	7600											
SPAG1	6674	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	101232531	101232532	+	Frame_Shift_Del	DEL	TA	TA	-													ctggaacttcatccattctcTatgaaacctcttctgaggcg					novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	TA	TA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	SPAG1	NM_172218	exon13	c.1559_1560del	p.520_520del	ATTCTCTATGAAA		108	15	0.14	124	0	0		80		18	0	0				-	101232532	TA	-	101232531	7	5	104	1	0	1	0	1	0	0	0	0	15030	1509	53	0	1606	0	SPAG1	8	101232531	Frame_Shift_Del	DEL	TA	TCGA-WZ-A7V3-01A-11D-A435-10		101232531	45131491	30	7601											
MYC	4609	mdanderson.org	37	chr8	128750607	128750607	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggagaacttctaccaGcagcagcagcagagcgagct	14	10	1	2	rs61752959	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	MYC,trunk,malignant_melanoma,0,1	MYC	NM_002467	exon2	c.G144C	p.Q48H	CTACCAGCAGCAG		60	5	0.08	56	2	0.0357142857		0	1	64	0	0				C	128750607	G	C	128750607	3	2	104	1	0	0	0	0	1	0	0	0	10063	962	34	5	150	5	MYC	8	128750607	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	27518076	128750607	17613415	31	7602											
LMX1B	4010	hgsc.bcm.edu;mdanderson.org	37	chr9	129455807	129455807	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cctctctctgagccaggtccGagagacactggcagctgaga	12	13	2	3	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	LMX1B_ENST00000355497,bladder,carcinoma,0,2	LMX1B_ENST00000355497	NM_001174146	exon5	c.G746T	p.R249L	AGGTCCGAGAGAC		64	4	0.06	51	0	0		0	2	1	0	0				T	129455807	G	T	129455807	3	4	104	1	0	0	0	0	1	0	0	0	8902	1058	37	1	764	1	LMX1B	9	129455807	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10		129455807	11757624	32	7603											
FNBP1	23048	mdanderson.org	37	chr9	132678245	132678245	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catggaacaattgtgcttacCagcttgagagaaagcttcat	9	8	1	2	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_015033	exon11	c.G1185A	p.L395L	GCTTACCAGCTTG		41	3	0.07	46	0	0				8	0	0				T	132678245	C	T	132678245	2	4	104	1	0	0	0	0	0	0	0	1	5997	608	21	3		3	FNBP1	9	132678245	Silent	SNP	C	TCGA-WZ-A7V3-01A-11D-A435-10	3222438	132678245	8535186	33	7604											
DNLZ	728489	mdanderson.org	37	chr9	139256497	139256497	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcttgccagggctggggggAccctcatcctcacccgcttc	12	16	3	0	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_001080849	exon3	c.T504C	p.G168G	GGGGGGACCCTCA		42	3	0.07	59	0	0				162	3	0.02				G	139256497	A	G	139256497	2	3	104	1	0	0	0	0	0	0	0	1	4696	262	10	4		4	DNLZ	9	139256497	Silent	SNP	A	TCGA-WZ-A7V3-01A-11D-A435-10	6578252	139256497	1956934	34	7605											
VCL	7414	broad.mit.edu	37	chr10	75854211	75854211	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taatcccacagtggatgaccGtggagtcggtaagggcagca	14	9	0	1	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	VCL	NM_003373	exon11	c.G1535A	p.R512H	ATGACCGTGGAGT		154	4	0.03	178	1	0.0056179775		77		49	0	0				A	75854211	G	A	75854211	3	1	104	1	0	0	0	0	1	0	0	0	17198	1145	40	1	1577	1	VCL	10	75854211	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10		75854211	59680536	35	7606											
KIF20B	9585	broad.mit.edu	37	chr10	91497687	91497687	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacacagttagaccttttagGtaatgattatttggtaagta	8	4	0	2	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	KIF20B,colon,carcinoma,-1,1	KIF20B	NM_016195	exon20	c.G2969T	p.G990V	TTTTAGGTAATGA		150	5	0.03	141	0	0		191	1	29	0	0				T	91497687	G	T	91497687	3	4	104	1	0	0	0	0	1	0	0	0	8328	1261	44	3	3043	3	KIF20B	10	91497687	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	15643476	91497687	44037060	36	7607											
MUC5B	727897	mdanderson.org	37	chr11	1247926	1247926	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcgacggcgacgtcttccGcttccctggcctttgcaact	9	16	1	0	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	MUC5B,colon,carcinoma,+1,2	MUC5B	NM_002458	exon4	c.G281A	p.R94H	TCTTCCGCTTCCC		52	3	0.06	89	0	0		1	2	0	0					A	1247926	G	A	1247926	3	1	104	1	0	0	0	0	1	0	0	0	10026	1087	38	1	295	1	MUC5B	11	1247926	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10		1247926	133758590	37	7608											
DUSP8	1850	mdanderson.org	37	chr11	1579076	1579076	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcatgatgtaggcgatggCgatggtggcagagcgggaga	18	6	1	3	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_004420	exon6	c.G769A	p.A257T	CGATGGCGATGGT		49	3	0.06	65	0	0				5	0	0				T	1579076	C	T	1579076	3	4	104	1	0	0	0	0	1	0	0	0	4857	768	27	1	1116	1	DUSP8	11	1579076	Missense_Mutation	SNP	C	TCGA-WZ-A7V3-01A-11D-A435-10	331150	1579076	133427440	38	7609											
ART5	116969	mdanderson.org	37	chr11	3661510	3661510	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcctttagcaggggggctGccttctcctccatctcctct	8	17	3	0	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_001079536	exon3	c.C149T	p.A50V	GGGGCTGCCTTCT		60	5	0.08	99	0	0				39	0	0				A	3661510	G	A	3661510	3	1	104	1	0	0	0	0	1	0	0	0	999	1319	46	2	738	2	ART5	11	3661510	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	2082434	3661510	131345006	39	7610											
CCKBR	887	mdanderson.org	37	chr11	6290931	6290931	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattagaatcactctttacGcagtgatcttcctgatgagc	7	11	3	4	rs141038981	bycluster;by1000genomes	TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	CCKBR_ENST00000525462,NS,carcinoma,-1,4	CCKBR_ENST00000525462	NM_176875	exon2	c.G184T	p.A62S	CTTTACGCAGTGA		46	3	0.07	88	0	0		-1	4	2	0	0				T	6290931	G	T	6290931	3	4	104	1	0	0	0	0	1	0	0	0	2901	1087	38	1	190	1	CCKBR	11	6290931	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	2629421	6290931	128715585	40	7611											
STX5	6811	mdanderson.org	37	chr11	62594629	62594629	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatggctagtagctcacctGtttgatgatatatgttagct	10	6	1	3	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_003164	exon5	c.C421A	p.Q141K	TCACCTGTTTGAT		32	3	0.09	61	0	0				27	0	0				T	62594629	G	T	62594629	3	4	104	1	0	0	0	0	1	0	0	0	15403	1386	48	3	674	3	STX5	11	62594629	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	56303698	62594629	72411887	41	7612											
NRXN2	9379	mdanderson.org	37	chr11	64428409	64428409	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaggccccggaggtctcgGctacgcccatctatgaagag	13	14	2	2	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_015080	exon10	c.C2001A	p.S667R	GTCTCGGCTACGC		46	4	0.09	67	0	0				82	0	0				T	64428409	G	T	64428409	3	4	104	1	0	0	0	0	1	0	0	0	10713	1194	42	2	3462	2	NRXN2	11	64428409	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	1833780	64428409	70578107	42	7613											
ATG2A	23130	mdanderson.org	37	chr11	64668089	64668089	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctcctgggacctgagagGccagttcttgccctgggaag	15	11	1	1	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_015104	exon31	c.C4341A	p.G1447G	TGAGAGGCCAGTT		23	3	0.13	28	0	0				228	0	0				T	64668089	G	T	64668089	2	4	104	1	0	0	0	0	0	0	0	1	1092	1190	42	2		2	ATG2A	11	64668089	Silent	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	239680	64668089	70338427	43	7614											
SPTBN2	6712	mdanderson.org	37	chr11	66468434	66468434	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccctgaggtcctcccagcCggtctgcacctctctcagcc	10	19	3	1	rs199703911	alternate_allele	TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_006946	exon16	c.G3136T	p.G1046C	CCCAGCCGGTCTG		16	2	0.13	35	0	0				14	0	0				A	66468434	C	A	66468434	3	1	104	1	0	0	0	0	1	0	0	0	15175	652	23	1	4124	1	SPTBN2	11	66468434	Missense_Mutation	SNP	C	TCGA-WZ-A7V3-01A-11D-A435-10	1800345	66468434	68538082	44	7615											
RHOD	29984	mdanderson.org	37	chr11	66837951	66837951	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acccatcatcgtcgtgggctGcaagactgacctgtgcaagg	12	12	1	2	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_014578	exon4	c.G386T	p.C129F	TGGGCTGCAAGAC		50	3	0.06	72	0	0				15	0	0				T	66837951	G	T	66837951	3	4	104	1	0	0	0	0	1	0	0	0	13386	1319	46	2	400	2	RHOD	11	66837951	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	369517	66837951	68168565	45	7616											
ALG8	79053	bcgsc.ca;mdanderson.org	37	chr11	77825007	77825007	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaaataacacgaacaaaGctgaaactcttccatcgaat	7	9	1	1	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	ALG8	NM_024079	exon7	c.C702A	p.S234R	AACAAAGCTGAAA		87	5	0.06	184	0	0		54		34	0	0				T	77825007	G	T	77825007	3	4	104	1	0	0	0	0	1	0	0	0	519	962	34	2	965	2	ALG8	11	77825007	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	10987056	77825007	57181509	46	7617											
ALG9	79796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	111728380	111728380	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagctgctactcccagcaCagcaatggaagtcttgtcca	8	15	1	0	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_001077690	exon7	c.G646A	p.V216M	CCAGCACAGCAAT		37	14	0.38	75	0	0				28	21	0.75				T	111728380	C	T	111728380	3	4	104	1	0	0	0	0	1	0	0	0	520	478	17	3	1250	3	ALG9	11	111728380	Missense_Mutation	SNP	C	TCGA-WZ-A7V3-01A-11D-A435-10	33903373	111728380	23278136	47	7618											
CEP164	22897	bcgsc.ca	37	chr11	117263330	117263330	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtcttatcacgtggctgGgtatgagcacgaggtgagtg	16	6	2	2	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	CEP164	NM_001271933	exon18	c.G2489T	p.G830V	TGGCTGGGTATGA		48	4	0.08	119	0	0		121		12	0	0				T	117263330	G	T	117263330	3	4	104	1	0	0	0	0	1	0	0	0	3271	1232	43	3	2546	3	CEP164	11	117263330	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	5534950	117263330	17743186	48	7619											
VSIG2	23584	mdanderson.org	37	chr11	124621416	124621416	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaggtgcaggtcagctcgGctgtcttccccaggggcgtg	16	11	2	0	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_014312	exon2	c.C122A	p.A41D	AGCTCGGCTGTCT		20	3	0.15	34	0	0				3	0	0				T	124621416	G	T	124621416	3	4	104	1	0	0	0	0	1	0	0	0	17283	1203	42	2	885	2	VSIG2	11	124621416	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	7358086	124621416	10385100	49	7620											
MAGOHB	55110	broad.mit.edu	37	chr12	10762454	10762454	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cggccaaccctatcagggggAggccacaaagcatcatcttc	10	14	3	0	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	MAGOHB	NM_018048	exon3	c.T240C	p.P80P	AGGGGGAGGCCAC		125	4	0.03	74	0	0		17		240	0	0				G	10762454	A	G	10762454	2	3	104	1	0	0	0	0	0	0	0	1	9244	291	11	4		4	MAGOHB	12	10762454	Silent	SNP	A	TCGA-WZ-A7V3-01A-11D-A435-10		10762454	123089441	50	7621											
DDX11	1663	ucsc.edu	37	chr12	31244689	31244689	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcagatgctgctgcatgcgGccactcggcaggccgcgggc	15	14	1	1	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	DDX11	NM_030653	exon10	c.G1126A	p.A376T	CATGCGGCCACTC		173	23	0.13	112	11	0.0982142857		188		138	36	0.26				A	31244689	G	A	31244689	3	1	104	1	0	0	0	0	1	0	0	0	4366	1203	42	2	1160	2	DDX11	12	31244689	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	20482235	31244689	102607206	51	7622											
KRT82	3888	mdanderson.org	37	chr12	52790015	52790015	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcaccctcaagtttgcagCgctgtgggaggggcgcagaa	16	10	1	1	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_033033	exon7	c.G1070A	p.R357H	TTGCAGCGCTGTG		18	2	0.11	24	0	0				0	0					T	52790015	C	T	52790015	3	4	104	1	0	0	0	0	1	0	0	0	8538	782	27	1	483	1	KRT82	12	52790015	Missense_Mutation	SNP	C	TCGA-WZ-A7V3-01A-11D-A435-10	21545326	52790015	81061880	52	7623											
NTN4	59277	broad.mit.edu	37	chr12	96180865	96180865	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttcccaaagtcctgggagCggtccagcaccatggcagcc	11	14	0	0	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	NTN4	NM_021229	exon2	c.G437A	p.R146H	TGGGAGCGGTCCA		83	3	0.04	112	1	0.0089285714		67		3	0	0				T	96180865	C	T	96180865	3	4	104	1	0	0	0	0	1	0	0	0	10749	768	27	1	1485	1	NTN4	12	96180865	Missense_Mutation	SNP	C	TCGA-WZ-A7V3-01A-11D-A435-10	43390850	96180865	37671030	53	7624											
SACS	26278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	23909357	23909357	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggctgaatccagtgcaaaGtggccattcacatgaaatgg	11	9	1	2	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_014363	exon10	c.C8658G	p.H2886Q	TGCAAAGTGGCCA		82	27	0.33	100	0	0				19	9	0.47				C	23909357	G	C	23909357	3	2	104	1	0	0	0	0	1	0	0	0	13855	1020	36	5	5085	5	SACS	13	23909357	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10		23909357	91260521	54	7625											
KIF26A	26153	mdanderson.org	37	chr14	104643748	104643748	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agagcagccccacgggccggGcccagtgtcggggcgaaggc	18	14	0	1	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_015656	exon12	c.G4623T	p.G1541G	GGCCGGGCCCAGT		19	2	0.11	12	0	0				172	1	0.01				T	104643748	G	T	104643748	2	4	104	1	0	0	0	0	0	0	0	1	8335	1190	42	2		2	KIF26A	14	104643748	Silent	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10		104643748	2705792	55	7626											
GABRB3	2562	mdanderson.org	37	chr15	26812790	26812790	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacacccacgacagaatcGttatcagtatagagggcata	10	9	1	2	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	GABRB3_ENST00000541819,colon,carcinoma,+1,7	GABRB3_ENST00000541819	NM_021912	exon7	c.C773A	p.T258K	AGAATCGTTATCA		53	3	0.06	59	0	0		1	7	7	0	0				T	26812790	G	T	26812790	3	4	104	1	0	0	0	0	1	0	0	0	6202	1145	40	1	660	1	GABRB3	15	26812790	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10		26812790	75718602	56	7627											
SPTBN5	51332	mdanderson.org	37	chr15	42177937	42177937	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgctggggctcacctgcGggccacatctgcccagctgt	13	14	2	0	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_016642	exon7	c.C1411A	p.R471S	ACCTGCGGGCCAC		26	3	0.12	38	0	0				0	0					T	42177937	G	T	42177937	3	4	104	1	0	0	0	0	1	0	0	0	15177	1116	39	1	9756	1	SPTBN5	15	42177937	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	15365147	42177937	60353455	57	7628											
TTBK2	146057	mdanderson.org	37	chr15	43067340	43067340	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaatttcttaccgctgtaAggggtccttctgcctgcgcc	9	13	2	0	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_173500	exon13	c.T1991C	p.L664P	GCTGTAAGGGGTC		22	3	0.14	32	0	0				3	0	0				G	43067340	A	G	43067340	3	3	104	1	0	0	0	0	1	0	0	0	16738	72	3	4	1755	4	TTBK2	15	43067340	Missense_Mutation	SNP	A	TCGA-WZ-A7V3-01A-11D-A435-10	889403	43067340	59464052	58	7629											
ZNF710	374655	mdanderson.org	37	chr15	90617483	90617483	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgagccggcacatgaagGtcaagcatggcgtcatggac	13	11	2	2	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_198526	exon4	c.G1786T	p.V596F	ATGAAGGTCAAGC		46	3	0.07	62	0	0				61	0	0				T	90617483	G	T	90617483	3	4	104	1	0	0	0	0	1	0	0	0	18170	1261	44	3	1796	3	ZNF710	15	90617483	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	47550143	90617483	11913909	59	7630											
SV2B	9899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	91810817	91810817	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctgtactgtgtgatgggGccctacagaatgaatacact	11	10	0	3	rs368688126	alternate_allele	TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_014848	exon9	c.G1152T	p.G384G	GATGGGGCCCTAC		133	39	0.29	192	0	0				1	1	1				T	91810817	G	T	91810817	2	4	104	1	0	0	0	0	0	0	0	1	15473	1190	42	2		2	SV2B	15	91810817	Silent	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	1193334	91810817	10720575	60	7631											
CACNA1H	8912	broad.mit.edu	37	chr16	1245464	1245464	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcattttcgccttttttgcGgtggagatggtcatcaagat	10	7	3	2	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	CACNA1H	NM_021098	exon4	c.G444T	p.A148A	TTTTGCGGTGGAG		63	3	0.05	156	0	0		317		4	0	0				T	1245464	G	T	1245464	2	4	104	1	0	0	0	0	0	0	0	1	2563	1103	39	1		1	CACNA1H	16	1245464	Silent	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10		1245464	89109289	61	7632											
SPSB3	90864	mdanderson.org	37	chr16	1828458	1828458	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgtcttcctctccgcagcgGcagtccctgccccggtgggc	12	18	2	0	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_080861	exon3	c.C282T	p.C94C	GCAGCGGCAGTCC		35	3	0.09	45	0	0				119	0	0				A	1828458	G	A	1828458	2	1	104	1	0	0	0	0	0	0	0	1	15169	1195	42	2		2	SPSB3	16	1828458	Silent	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	582994	1828458	88526295	62	7633											
C16orf89	146556	hgsc.bcm.edu	37	chr16	5106086	5106086	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgtcccgggtagggtagGcgtatccgatggcctcagct	15	10	1	1	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_001098514	exon5	c.C731A	p.A244D	GGGTAGGCGTATC		88	4	0.05	123	0	0				0	0					T	5106086	G	T	5106086	3	4	104	1	0	0	0	0	1	0	0	0	1849	1203	42	2	628	2	C16orf89	16	5106086	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	3277628	5106086	85248667	63	7634											
ADCY7	113	ucsc.edu	37	chr16	50327364	50327364	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atggtgaccgtcgctgcatgCctgacaacaacttccacagc	9	14	0	2	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	ADCY7	NM_001114	exon5	c.C787T	p.P263S	TGCATGCCTGACA		45	4	0.09	107	1	0.0093457944		90		15	0	0				T	50327364	C	T	50327364	3	4	104	1	0	0	0	0	1	0	0	0	298	739	26	2	805	2	ADCY7	16	50327364	Missense_Mutation	SNP	C	TCGA-WZ-A7V3-01A-11D-A435-10	45221278	50327364	40027389	64	7635											
DHX38	9785	mdanderson.org	37	chr16	72141698	72141698	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccatcttctacaggcccaaGgtggggcagcggctggctcc	14	14	2	0	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_014003	exon21	c.G2964T	p.K988N	GCCCAAGGTGGGG		44	3	0.07	39	0	0				113	0	0				T	72141698	G	T	72141698	3	4	104	1	0	0	0	0	1	0	0	0	4539	1014	35	3	3042	3	DHX38	16	72141698	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	21814334	72141698	18213055	65	7636											
GSG2	83903	mdanderson.org	37	chr17	3627691	3627691	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggacctcagcgtgtgcggCcagcccagggacggcgacga	16	15	1	0	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_031965	exon1	c.C462T	p.G154G	GTGCGGCCAGCCC		45	3	0.07	56	0	0				20	0	0				T	3627691	C	T	3627691	2	4	104	1	0	0	0	0	0	0	0	1	6862	726	26	2		2	GSG2	17	3627691	Silent	SNP	C	TCGA-WZ-A7V3-01A-11D-A435-10		3627691	77567519	66	7637											
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	3999200	3999200	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accttttgaagtgttcttccGcacaaaatttatctgaagat	6	8	2	3	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_015113	exon11	c.C1838T	p.A613V	TCTTCCGCACAAA		118	30	0.25	132	0	0				39	11	0.28				A	3999200	G	A	3999200	3	1	104	1	0	0	0	0	1	0	0	0	18294	1087	38	1	7227	1	ZZEF1	17	3999200	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	371509	3999200	77196010	67	7638											
CDK5RAP3	80279	mdanderson.org	37	chr17	46052882	46052882	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttctcccctctctagggCgaaaatgtccgaggagaact	9	13	3	1	rs369343510	alternate_allele	TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	CDK5RAP3,NS,carcinoma,0,1	CDK5RAP3	NM_176096	exon7	c.C516A	p.G172G	CTAGGGCGAAAAT		13	3	0.23	17	0	0		0	1	313	0	0				A	46052882	C	A	46052882	2	1	104	1	0	0	0	0	0	0	0	1	3169	755	27	1		1	CDK5RAP3	17	46052882	Silent	SNP	C	TCGA-WZ-A7V3-01A-11D-A435-10	42053682	46052882	35142328	68	7639											
CACNA1G	8913	mdanderson.org	37	chr17	48697094	48697094	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatccagggctccctggaGtgggagctgaagctgatgga	16	9	0	3	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_198385	exon34	c.G5832T	p.E1944D	CCTGGAGTGGGAG		24	3	0.13	36	0	0				1	0	0				T	48697094	G	T	48697094	3	4	104	1	0	0	0	0	1	0	0	0	2562	1020	36	3	6233	3	CACNA1G	17	48697094	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	2644212	48697094	32498116	69	7640											
PGS1	9489	broad.mit.edu	37	chr17	76411043	76411043	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgggtacaggtcagttcacCgggacctggaggcccagatt	14	10	2	1	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	PGS1	NM_024419	exon8	c.C1486T	p.R496W	GTTCACCGGGACC		85	4	0.05	105	0	0		30		99	0	0				T	76411043	C	T	76411043	3	4	104	1	0	0	0	0	1	0	0	0	11855	643	23	1	1516	1	PGS1	17	76411043	Missense_Mutation	SNP	C	TCGA-WZ-A7V3-01A-11D-A435-10	27713949	76411043	4784167	70	7641											
RNF213	57674	broad.mit.edu	37	chr17	78313950	78313951	+	In_Frame_Ins	INS	-	-	GGTCTGTGA													gaagactaccagctcgtcatINSggtctgtgatggggactggg					novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	RNF213	NM_001256071	exon26	c.5783_5784insGGTCTGTGA	p.M1928delinsMVCE	TCGTCATGGTCTG		72	8	0.11	87	0	0		766		23	0	0				GGTCTGTGA	78313951	-	GGTCTGTGA	78313950	7	5	104	1	0	1	1	0	0	0	0	0	13528	1464	51	0	6200	0	RNF213	17	78313950	In_Frame_Ins	INS	-	TCGA-WZ-A7V3-01A-11D-A435-10	1902907	78313950	2881260	71	7642											
B3GNTL1	146712	broad.mit.edu	37	chr17	81006578	81006578	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaaacagacagctccatGgtaccttcaaagtcctgttg	8	10	1	2	rs368812056		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	B3GNTL1	NM_001009905	exon2	c.C144A	p.T48T	CTCCATGGTACCT		97	3	0.03	134	0	0		40		3	0	0				T	81006578	G	T	81006578	2	4	104	1	0	0	0	0	0	0	0	1	1263	1335	47	3		3	B3GNTL1	17	81006578	Silent	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	2692628	81006578	188632	72	7643											
C19orf21	126353	mdanderson.org	37	chr19	758104	758104	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtctcggagggtccccaGcccggactccggagagccct	15	15	1	1	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_173481	exon2	c.G1158T	p.Q386H	TCCCCAGCCCGGA		35	3	0.09	48	0	0				0	0					T	758104	G	T	758104	3	4	104	1	0	0	0	0	1	0	0	0	1925	962	34	2	1160	2	C19orf21	19	758104	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10		758104	58370879	73	7644											
KDM4B	23030	mdanderson.org	37	chr19	5131404	5131404	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccttcaaccaggagcacGtgtcctgccagcaggccttt	10	15	1	0	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_015015	exon12	c.G1633T	p.V545L	GAGCACGTGTCCT		41	3	0.07	76	0	0				33	0	0				T	5131404	G	T	5131404	3	4	104	1	0	0	0	0	1	0	0	0	8172	1145	40	1	1671	1	KDM4B	19	5131404	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	4373300	5131404	53997579	74	7645											
AP1M1	8907	mdanderson.org	37	chr19	16337286	16337286	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgtgggctccatcaagatgCgagtcttcctctcgggcatg	12	12	3	1	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_001130524	exon7	c.C637T	p.R213X	AAGATGCGAGTCT		25	3	0.12	29	0	0				179	0	0				T	16337286	C	T	16337286	4	4	104	1	0	0	0	0	0	1	0	0	730	760	27	1	663	1	AP1M1	19	16337286	Nonsense_Mutation	SNP	C	TCGA-WZ-A7V3-01A-11D-A435-10	11205882	16337286	42791697	75	7646											
F2RL3	9002	mdanderson.org	37	chr19	17000758	17000758	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cactctatggtcacatgtatGgctcagtgctgctgctggcc	11	12	3	0	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_003950	exon2	c.G484T	p.G162C	ATGTATGGCTCAG		21	3	0.14	30	0	0				0	0					T	17000758	G	T	17000758	3	4	104	1	0	0	0	0	1	0	0	0	5374	1348	47	3	490	3	F2RL3	19	17000758	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	663472	17000758	42128225	76	7647											
ZNF233	353355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	44778517	44778517	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatccctacaaatgtgatgtGtgtgggaaaggcttcagttg	12	6	1	1	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_001207005	exon5	c.G1704T	p.V568V	TGATGTGTGTGGG		96	19	0.2	94	0	0				14	2	0.14				T	44778517	G	T	44778517	2	4	104	1	0	0	0	0	0	0	0	1	17843	1364	48	3		3	ZNF233	19	44778517	Silent	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	27777759	44778517	14350466	77	7648											
EPS8L1	54869	mdanderson.org	37	chr19	55593969	55593969	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggactcgtggacccgccccGggtgaggggcggggctggga	22	11	0	1	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	EPS8L1_ENST00000310075,colon,carcinoma,0,3	EPS8L1_ENST00000310075	NM_133180	exon12	c.G1213T	p.G405W	CGCCCCGGGTGAG		48	3	0.06	53	0	0		0	3	24	0	0				T	55593969	G	T	55593969	3	4	104	1	0	0	0	0	1	0	0	0	5223	1130	39	1	1307	1	EPS8L1	19	55593969	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	10815452	55593969	3535014	78	7649											
ADRA1D	146	mdanderson.org	37	chr20	4202383	4202383	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggtcgtgggtctccggaaCggccccagcagcctccactc	13	16	1	0	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_000678	exon2	c.G1506A	p.P502P	CCGGAACGGCCCC		22	2	0.09	30	0	0				0	0					T	4202383	C	T	4202383	2	4	104	1	0	0	0	0	0	0	0	1	335	523	19	1		1	ADRA1D	20	4202383	Silent	SNP	C	TCGA-WZ-A7V3-01A-11D-A435-10		4202383	58823137	79	7650											
JPH2	57158	mdanderson.org	37	chr20	42788659	42788659	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggacgcggcgtcgctggcGcccgagctgaggtcgctctt	17	13	1	1	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_020433	exon2	c.C768A	p.G256G	GCTGGCGCCCGAG		23	3	0.13	17	0	0				0	0					T	42788659	G	T	42788659	2	4	104	1	0	0	0	0	0	0	0	1	8004	1074	38	1		1	JPH2	20	42788659	Silent	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	38586276	42788659	20236861	80	7651											
TRMT2A	27037	mdanderson.org	37	chr22	20102547	20102547	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggctggtgcgcacagtcaGctgcttccagtggcctgtgt	15	12	1	0	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_001257994	exon5	c.C946A	p.L316M	CAGTCAGCTGCTT		36	3	0.08	46	0	0				69	0	0				T	20102547	G	T	20102547	3	4	104	1	0	0	0	0	1	0	0	0	16625	962	34	2	963	2	TRMT2A	22	20102547	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10		20102547	31202019	81	7652											
TRMT2A	27037	mdanderson.org	37	chr22	20104077	20104077	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagggggcaccgagacgGtagggcagctcagggcactg	18	11	1	1	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_001257994	exon2	c.C83A	p.T28N	GAGACGGTAGGGC		33	3	0.09	42	0	0				34	0	0				T	20104077	G	T	20104077	3	4	104	1	0	0	0	0	1	0	0	0	16625	1261	44	3	1838	3	TRMT2A	22	20104077	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	1530	20104077	31200489	82	7653											
DEPDC5	9681	mdanderson.org	37	chr22	32218702	32218702	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaattcccgccagcctgGtgacggcatgtccttcttga	10	14	1	2	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_014662	exon24	c.G2030T	p.G677V	AGCCTGGTGACGG		48	3	0.06	70	0	0				28	0	0				T	32218702	G	T	32218702	3	4	104	1	0	0	0	0	1	0	0	0	4470	1261	44	3	2138	3	DEPDC5	22	32218702	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10	12114625	32218702	19085864	83	7654											
RBM3	5935	mdanderson.org	37	chrX	48434941	48434941	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tggcaggtattatgacagtcGacctggagggtatggatatg	15	5	0	1	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_006743	exon5	c.G362T	p.R121L	ACAGTCGACCTGG		47	3	0.06	47	0	0				2391	2	0				T	48434941	G	T	48434941	3	4	104	1	0	0	0	0	1	0	0	0	13180	1058	37	1	376	1	RBM3	23	48434941	Missense_Mutation	SNP	G	TCGA-WZ-A7V3-01A-11D-A435-10		48434941	106835619	84	7655											
NOL9	79707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	6586826	6586826	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aattcacggtccttagctctTccgggggcacaggggtgagg	15	10	2	1	novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	.	NM_024654	exon11	c.A1889T	p.E630V	AGCTCTTCCGGGG		130	28	0.22	124	0	0				70	13	0.19				A	6586826	T	A	6586826	3	1	105	1	0	0	0	0	1	0	0	0	10574	1783	62	5	227	5	NOL9	1	6586826	Missense_Mutation	SNP	T	TCGA-WZ-A7V4-01A-11D-A435-10		6586826	242663795	1	7656											
PIK3CD	5293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	9775907	9775907	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagccctccccaccccgcagGcctccacgagtttgactcct	7	21	0	1	novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	.	NM_005026	exon5	c.G371A	p.G124D	CCGCAGGCCTCCA		82	12	0.15	77	0	0				86	9	0.1				A	9775907	G	A	9775907	3	1	105	1	0	0	0	0	1	0	0	0	11962	1217	42	2	381	2	PIK3CD	1	9775907	Missense_Mutation	SNP	G	TCGA-WZ-A7V4-01A-11D-A435-10	3189081	9775907	239474714	2	7657											
NRAS	4893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	115256529	115256529	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatggcactgtactcttctTgtccagctgtatccagtatg	8	11	3	0	rs11554290	bycluster;byfrequency;byhapmap	TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	NRAS,NS,haematopoietic_neoplasm,-1,2068	NRAS	NM_002524	exon3	c.A182G	p.Q61R	TCTTCTTGTCCAG		136	18	0.13	151	0	0		-1	2068	53	14	0.26				C	115256529	T	C	115256529	3	2	105	1	0	0	0	0	1	0	0	0	10687	1812	63	4	399	4	NRAS	1	115256529	Missense_Mutation	SNP	T	TCGA-WZ-A7V4-01A-11D-A435-10	105480622	115256529	133994092	3	7658											
OBSCN	84033	bcgsc.ca	37	chr1	228412227	228412228	+	Missense_Mutation	DNP	TG	TG	CA													caggcagaggcaggagccagTgccacactgagctgcgaggt					novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	TG	TG					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	OBSCN	NM_001271223	exon10	c.G2998A	p.A908T	AGCCAGTGCCACA		98	8	0.08	104	0	0		2142		10	0	0				CA	228412228	TG	CA	228412227	3	2	105	1	0	0	0	0	1	0	0	0	10859	1693	59	4	2751	4	OBSCN	1	228412227	Missense_Mutation	DNP	TG	TCGA-WZ-A7V4-01A-11D-A435-10	113155698	228412227	20838394	4	7659											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	228480321	228480321	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaacagtgcagcccctgtGgagtggagaaaggggtctga	16	8	1	3	novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	.	NM_001271223	exon45	c.G11988T	p.V3996V	CCCTGTGGAGTGG		168	24	0.14	185	0	0				3	1	0.33				T	228480321	G	T	228480321	2	4	105	1	0	0	0	0	0	0	0	1	10859	1335	47	3		3	OBSCN	1	228480321	Silent	SNP	G	TCGA-WZ-A7V4-01A-11D-A435-10	68094	228480321	20770300	5	7660											
CRIM1	51232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	36623892	36623892	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caatccctttgagtttccaaGtcaggatatgtgcctttcag	8	10	2	1	novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	.	NM_016441	exon2	c.G467A	p.S156N	TTCCAAGTCAGGA		142	22	0.15	163	0	0				19	4	0.21				A	36623892	G	A	36623892	3	1	105	1	0	0	0	0	1	0	0	0	3896	1029	36	3	473	3	CRIM1	2	36623892	Missense_Mutation	SNP	G	TCGA-WZ-A7V4-01A-11D-A435-10		36623892	206575481	6	7661											
GPR45	11250	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	105859305	105859305	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tactgctggagaatcaaaaaAttccgcgaggcctgcataga	10	9	1	2	novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	.	NM_007227	exon1	c.A990T	p.K330N	CAAAAAATTCCGC		131	11	0.08	120	0	0				6	1	0.17				T	105859305	A	T	105859305	3	4	105	1	0	0	0	0	1	0	0	0	6735	98	4	5	992	5	GPR45	2	105859305	Missense_Mutation	SNP	A	TCGA-WZ-A7V4-01A-11D-A435-10	69235413	105859305	137340068	7	7662											
KIAA2018	205717	hgsc.bcm.edu	37	chr3	113376107	113376107	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccctgcttgttgttgttgCtgttgctgctgctgctgctg	13	10	0	0	novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	KIAA2018,colon,carcinoma,0,1	KIAA2018	NM_001009899	exon7	c.G4422A	p.Q1474Q	TTGTTGCTGTTGC		59	6	0.1	53	0	0		0	1	1	0	0				T	113376107	C	T	113376107	2	4	105	1	0	0	0	0	0	0	0	1	8309	796	28	2		2	KIAA2018	3	113376107	Silent	SNP	C	TCGA-WZ-A7V4-01A-11D-A435-10		113376107	84646323	8	7663											
ZNF721	170960	ucsc.edu	37	chr4	437132	437132	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcttgtgttgattcaggGctgtgtaccgtccaaaggct	11	8	2	1	novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	ZNF721	NM_133474	exon3	c.T1124A	p.F375Y	TTCAGGGCTGTGT		86	4	0.05	93	0	0		205		28	8	0.29				T	437132	G	T	437132	3	4	105	1	0	0	0	0	1	0	0	0	18175	1203	42	2	1651	2	ZNF721	4	437132	Missense_Mutation	SNP	G	TCGA-WZ-A7V4-01A-11D-A435-10		437132	190717144	9	7664											
DHX29	54505	hgsc.bcm.edu;bcgsc.ca	37	chr5	54581236	54581236	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catcatcttcagacttgattAccctaaccctacaaagaagc	4	13	3	3	novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	.	NM_019030	exon10	c.T1241C	p.V414A	TTGATTACCCTAA		124	7	0.06	151	0	0				20	5	0.25				G	54581236	A	G	54581236	3	3	105	1	0	0	0	0	1	0	0	0	4531	391	14	4	2940	4	DHX29	5	54581236	Missense_Mutation	SNP	A	TCGA-WZ-A7V4-01A-11D-A435-10		54581236	126334024	10	7665											
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	139907915	139907915	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tcatgctaacttctcatctgGagtaggtaccacagcagctt	8	11	3	0	novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	.	NM_017747	exon29	c.G5384A	p.G1795E	CATCTGGAGTAGG		91	13	0.14	128	0	0				67	24	0.36				A	139907915	G	A	139907915	3	1	105	1	0	0	0	0	1	0	0	0	624	1174	41	3	5604	3	ANKHD1	5	139907915	Missense_Mutation	SNP	G	TCGA-WZ-A7V4-01A-11D-A435-10	85326679	139907915	41007345	11	7666											
PCDHA3	56145	ucsc.edu	37	chr5	140182571	140182571	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtagcgaaggtgcgcgcaGtggatgcagactcaggctac	16	9	1	1	novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	PCDHA3	NM_031497	exon1	c.G1789T	p.V597L	CGCGCAGTGGATG		43	4	0.09	54	0	0		396		0	0					T	140182571	G	T	140182571	3	4	105	1	0	0	0	0	1	0	0	0	11571	1029	36	3	1791	3	PCDHA3	5	140182571	Missense_Mutation	SNP	G	TCGA-WZ-A7V4-01A-11D-A435-10	274656	140182571	40732689	12	7667											
HLA-C	3107	ucsc.edu	37	chr6	31238898	31238898	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccaggtatctgcggagccActccacgcacgtgccctcca	9	18	1	0	rs201707949	byfrequency	TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	HLA-C_ENST00000383329,NS,carcinoma,0,4	HLA-C	NM_002117	exon3	c.T571G	p.W191G	GGAGCCACTCCAC		50	1	0.02	57	2	0.0350877193		92	4	2926	507	0.17				C	31238898	A	C	31238898	3	2	105	1	0	0	0	0	1	0	0	0	7237	159	6	4	553	4	HLA-C	6	31238898	Missense_Mutation	SNP	A	TCGA-WZ-A7V4-01A-11D-A435-10		31238898	139876169	13	7668											
NUP188	23511	ucsc.edu	37	chr9	131735464	131735464	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caccagcactgcatgcatgtGtgtctatggactgctctctt	9	12	2	0	novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	NUP188	NM_015354	exon12	c.G1139T	p.C380F	GCATGTGTGTCTA		37	4	0.11	46	0	0		140		68	0	0				T	131735464	G	T	131735464	3	4	105	1	0	0	0	0	1	0	0	0	10805	1377	48	3	1185	3	NUP188	9	131735464	Missense_Mutation	SNP	G	TCGA-WZ-A7V4-01A-11D-A435-10		131735464	9477967	14	7669											
C11orf48	79081	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	62434994	62434994	+	Splice_Site	DEL	C	C	-													gggggagggaacaatacttaCcctcaaagctattaggaggc					novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	C11orf48	NM_024099	exon5	c.538+2G>-	.	TACTTACCCTCAA		134	16	0.12	142	0	0		18		1	0	0				-	62434994	C	-	62434994	8	5	105	1	0	1	0	1	0	0	1	0	1649	521	18	0	268	0	C11orf48	11	62434994	Splice_Site	DEL	C	TCGA-WZ-A7V4-01A-11D-A435-10		62434994	72571522	15	7670											
OR8S1	341568	bcgsc.ca	37	chr12	48919659	48919660	+	Missense_Mutation	DNP	TG	TG	CA													agtcattgtgcccaagatgcTggagaacctcctgtcacaga					novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	TG	TG					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	OR8S1	NM_001005203	exon1	c.G246A	p.L82P	AGATGCTGGAGAA		111	10	0.09	136	1	0.0073529412		47		0	0					CA	48919660	TG	CA	48919659	3	2	105	1	0	0	0	0	1	0	0	0	11292	1580	55	4	247	4	OR8S1	12	48919659	Missense_Mutation	DNP	TG	TCGA-WZ-A7V4-01A-11D-A435-10		48919659	84932236	16	7671											
LRRC43	254050	ucsc.edu	37	chr12	122685163	122685164	+	Missense_Mutation	DNP	AA	AA	GG													gggagaaagacaagaaagggAaggagaaagacaggacgggg					novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	AA	AA					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	LRRC43	NM_001098519	exon9	c.A1577G	p.K526G	AAAGGGAAGGAGA		64	22	0.34	52	0	0		105		2	0	0				GG	122685164	AA	GG	122685163	3	3	105	1	0	0	0	0	1	0	0	0	9045	247	9	4	1610	4	LRRC43	12	122685163	Missense_Mutation	DNP	AA	TCGA-WZ-A7V4-01A-11D-A435-10	73765504	122685163	11166732	17	7672											
PGAM5	192111	hgsc.bcm.edu;mdanderson.org	37	chr12	133291445	133291445	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttgtatttcaacatcaggCgagaaccactgtctctgatc	7	11	4	2	rs374915398		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	.	NM_138575	exon2	c.C193T	p.R65X	ATCAGGCGAGAAC		107	10	0.09	93	0	0				37	4	0.11				T	133291445	C	T	133291445	4	4	105	1	0	0	0	0	0	1	0	0	11823	782	27	1	199	1	PGAM5	12	133291445	Nonsense_Mutation	SNP	C	TCGA-WZ-A7V4-01A-11D-A435-10	10606282	133291445	560450	18	7673											
PKMYT1	9088	bcgsc.ca	37	chr16	3025413	3025413	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacctcaccagctcctgctGtacccagctccaccagcagt	8	18	1	0	novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	PKMYT1	NM_182687	exon4	c.C779A	p.T260K	CCTGCTGTACCCA		117	6	0.05	111	0	0		23		135	0	0				T	3025413	G	T	3025413	3	4	105	1	0	0	0	0	1	0	0	0	12025	1377	48	3	782	3	PKMYT1	16	3025413	Missense_Mutation	SNP	G	TCGA-WZ-A7V4-01A-11D-A435-10		3025413	87329340	19	7674											
FUK	197258	mdanderson.org	37	chr16	70508475	70508475	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgccactatgagggggctgGtcagatcctgatccgccagg	14	13	1	3	novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	.	NM_145059	exon17	c.G2033T	p.G678V	GGGCTGGTCAGAT		23	3	0.13	28	0	0				14	0	0				T	70508475	G	T	70508475	3	4	105	1	0	0	0	0	1	0	0	0	6130	1261	44	3	2095	3	FUK	16	70508475	Missense_Mutation	SNP	G	TCGA-WZ-A7V4-01A-11D-A435-10	67483062	70508475	19846278	20	7675											
HYDIN	54768	broad.mit.edu	37	chr16	70868034	70868034	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagacttctttgggcttcaGtgtgatgttgtggaagggcg	15	6	2	2	rs202145562	bycluster	TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	HYDIN	NM_001270974	exon79	c.C13435A	p.L4479M	GCTTCAGTGTGAT		49	6	0.12	60	1	0.0166666667		788		0	0					T	70868034	G	T	70868034	3	4	105	1	0	0	0	0	1	0	0	0	7510	1020	36	3	1962	3	HYDIN	16	70868034	Missense_Mutation	SNP	G	TCGA-WZ-A7V4-01A-11D-A435-10	359559	70868034	19486719	21	7676											
SENP3	26168	bcgsc.ca	37	chr17	7466636	7466636	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgaagaggaggaagaagaGgaggaggaggaggatgaaga	21	0	0	6	novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	SENP3	NM_015670	exon2	c.G243A	p.E81E	AGAAGAGGAGGAG		90	5	0.06	102	2	0.0196078431		18		131	1	0.01				A	7466636	G	A	7466636	2	1	105	1	0	0	0	0	0	0	0	1	14101	991	35	3		3	SENP3	17	7466636	Silent	SNP	G	TCGA-WZ-A7V4-01A-11D-A435-10		7466636	73728574	22	7677											
FLCN	201163	bcgsc.ca	37	chr17	17118366	17118366	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cacagacaggttctggttggTcagagccgcttcaatcttat	10	10	4	2	novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	FLCN	NM_144997	exon13	c.A1471G	p.T491A	GGTTGGTCAGAGC		64	5	0.08	88	0	0		87		80	0	0				C	17118366	T	C	17118366	3	2	105	1	0	0	0	0	1	0	0	0	5953	1667	58	4	276	4	FLCN	17	17118366	Missense_Mutation	SNP	T	TCGA-WZ-A7V4-01A-11D-A435-10	9651730	17118366	64076844	23	7678											
NPC1	4864	ucsc.edu;bcgsc.ca	37	chr18	21114422	21114422	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtactcacggagctgcccatGtgggcaagtgcctcttccgc	12	14	2	0	novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	NPC1	NM_000271	exon23	c.C3579A	p.H1193Q	GCCCATGTGGGCA		53	5	0.09	57	0	0		114		94	0	0				T	21114422	G	T	21114422	3	4	105	1	0	0	0	0	1	0	0	0	10616	1368	48	3	269	3	NPC1	18	21114422	Missense_Mutation	SNP	G	TCGA-WZ-A7V4-01A-11D-A435-10		21114422	56962826	24	7679											
GPR108	56927	hgsc.bcm.edu	37	chr19	6737580	6737580	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cgagccccctcctctcgctcActgccatctctggagccacc	7	21	3	0	novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	.	NM_001080452	exon1	c.T8G	p.V3G	TCGCTCACTGCCA		17	5	0.29	6	0	0				6	1	0.17				C	6737580	A	C	6737580	3	2	105	1	0	0	0	0	1	0	0	0	6663	159	6	4	1695	4	GPR108	19	6737580	Missense_Mutation	SNP	A	TCGA-WZ-A7V4-01A-11D-A435-10		6737580	52391403	25	7680											
FKBP8	23770	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr19	18650505	18650505	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggcggccctgggaccagCgtcttcttcctcaacagccc	10	18	3	0	rs370114965	alternate_allele	TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	FKBP8,NS,carcinoma,0,1	FKBP8	NM_012181	exon3	c.G318T	p.T106T	GACCAGCGTCTTC		35	5	0.14	31	0	0		0	1	401	87	0.22				A	18650505	C	A	18650505	2	1	105	1	0	0	0	0	0	0	0	1	5946	755	27	1		1	FKBP8	19	18650505	Silent	SNP	C	TCGA-WZ-A7V4-01A-11D-A435-10	11912925	18650505	40478478	26	7681											
CDH22	64405	broad.mit.edu;mdanderson.org	37	chr20	44839036	44839036	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcctgcacctccaggaggCcggagggcggccggaactcg	15	16	0	0	novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	CDH22	NM_021248	exon7	c.G1196A	p.G399D	AGGAGGCCGGAGG		36	5	0.14	39	0	0		112		1	0	0				T	44839036	C	T	44839036	3	4	105	1	0	0	0	0	1	0	0	0	3129	739	26	2	1314	2	CDH22	20	44839036	Missense_Mutation	SNP	C	TCGA-WZ-A7V4-01A-11D-A435-10		44839036	18186484	27	7682											
THOC5	8563	broad.mit.edu	37	chr22	29932681	29932681	+	Frame_Shift_Del	DEL	G	G	-													cttcacctcaatctccttgaGaatcttctccttgttagata					novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	THOC5,NS,carcinoma,0,2	THOC5	NM_001002878	exon8	c.646delC	p.L216fs	CCTTGAGAATCTT		105	9	0.09	124	0	0		58	2	92	12	0.13				-	29932681	G	-	29932681	7	5	105	1	0	1	0	1	0	0	0	0	15927	942	33	0	1461	0	THOC5	22	29932681	Frame_Shift_Del	DEL	G	TCGA-WZ-A7V4-01A-11D-A435-10		29932681	21371885	28	7683											
KDM6A	7403	broad.mit.edu	37	chrX	44918601	44918602	+	Frame_Shift_Del	DEL	TA	TA	-													ggatggacctaggcactctcTatgaatcctgcaaccagcct					novel		TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	TA	TA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	KDM6A	NM_021140	exon12	c.1084_1085del	p.362_362del	ACTCTCTATGAAT		208	7	0.03	205	0	0		274		30	0	0				-	44918602	TA	-	44918601	7	5	105	1	0	1	0	1	0	0	0	0	8179	1522	53	0	1130	0	KDM6A	23	44918601	Frame_Shift_Del	DEL	TA	TCGA-WZ-A7V4-01A-11D-A435-10		44918601	110351959	29	7684											
FAM104B	90736	ucsc.edu	37	chrX	55172630	55172630	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atacccctcatgcaagaactGgggaaagtttgcatcgggtt	11	9	1	1	rs113263757	bycluster	TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	FAM104B	NM_001166699	exon3	c.C238T	p.Q80X	AGAACTGGGGAAA		37	7	0.19	38	2	0.0526315789		28		66	0	0				A	55172630	G	A	55172630	4	1	105	1	0	0	0	0	0	1	0	0	5417	1357	47	3	217	3	FAM104B	23	55172630	Nonsense_Mutation	SNP	G	TCGA-WZ-A7V4-01A-11D-A435-10	10254029	55172630	100097930	30	7685			1	15		2	2	16	N	G_C	1.502084e-05
FAM104B	90736	ucsc.edu;mdanderson.org	37	chrX	55172645	55172645	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gaactggggaaagtttgcatCgggttcagtaacaatctggt	13	6	2	0	rs1047042	bycluster;byfrequency;alternate_allele	TCGA-WZ-A7V4-01A-11D-A435-10	TCGA-WZ-A7V4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a7bea22d-c914-41c9-bb43-0b1785b36b5b	5d280fa0-3f46-444a-8d3f-bc1be8090d47	.	FAM104B	NM_001166699	exon3	c.G223C	p.D75H	TTGCATCGGGTTC		39	8	0.21	38	1	0.0263157895		28		77	0	0				G	55172645	C	G	55172645	3	3	105	1	0	0	0	0	1	0	0	0	5417	884	31	5	232	5	FAM104B	23	55172645	Missense_Mutation	SNP	C	TCGA-WZ-A7V4-01A-11D-A435-10	15	55172645	100097915	31	7686			1	15		2	2	16	N	G_C	1.502084e-05
PHC2	1912	mdanderson.org	37	chr1	33820462	33820462	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgaagcaggctgcagttGtaagatgacagctgaagtgt	15	5	0	4	rs139804561	alternate_allele	TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_198040	exon7	c.C1369A	p.Q457K	GCAGTTGTAAGAT		40	3	0.08	51	0	0				1	0	0				T	33820462	G	T	33820462	3	4	106	1	0	0	0	0	1	0	0	0	11864	1386	48	3	1239	3	PHC2	1	33820462	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10		33820462	215430159	1	7687											
STK40	83931	mdanderson.org	37	chr1	36820843	36820843	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	accacgcggaccacgtcgtaGaagattaccacagtctccct	8	15	1	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_032017	exon6	c.C534A	p.F178L	GTCGTAGAAGATT		44	3	0.07	48	0	0				32	0	0				T	36820843	G	T	36820843	3	4	106	1	0	0	0	0	1	0	0	0	15362	933	33	3	801	3	STK40	1	36820843	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	3000381	36820843	212429778	2	7688											
PFKFB2	5208	ucsc.edu	37	chr1	207252307	207252307	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tctggctcgtaggcagcagaGaccacactggctgtgcgcag	14	12	1	1	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	PFKFB2	NM_001018053	exon15	c.G1359T	p.E453D	AGCAGAGACCACA		37	4	0.11	38	0	0		70		2	0	0				T	207252307	G	T	207252307	3	4	106	1	0	0	0	0	1	0	0	0	11808	933	33	3	1585	3	PFKFB2	1	207252307	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	170431464	207252307	41998314	3	7689											
BIRC6	57448	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	32690146	32690146	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gctctagaatccacttggttCtggtctagcccttgcaattt	8	11	3	1	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	BIRC6	NM_016252	exon26	c.C5270G	p.S1757C	TTGGTTCTGGTCT		657	149	0.23	510	1	0.0019607843		838		44	13	0.3				G	32690146	C	G	32690146	3	3	106	1	0	0	0	0	1	0	0	0	1437	913	32	5	5372	5	BIRC6	2	32690146	Missense_Mutation	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10		32690146	210509227	4	7690											
XPO1	7514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	61708414	61708414	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcacaaagagctttacttgaGcactgcaaatcaaaacacaa	5	10	2	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_003400	exon24	c.C2975G	p.A992G	ACTTGAGCACTGC		289	32	0.11	295	0	0				618	114	0.18				C	61708414	G	C	61708414	3	2	106	1	0	0	0	0	1	0	0	0	17504	971	34	5	248	5	XPO1	2	61708414	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	29018268	61708414	181490959	5	7691											
CWC22	57703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	180810353	180810353	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcttgtcttctttctttttGtttcctatcatttgtttgct	4	8	5	0	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_020943	exon20	c.C2230G	p.Q744E	CTTTTTGTTTCCT		90	11	0.12	92	0	0				239	65	0.27				C	180810353	G	C	180810353	3	2	106	1	0	0	0	0	1	0	0	0	4091	1386	48	5	500	5	CWC22	2	180810353	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	119101939	180810353	62389020	6	7692											
ITGA4	3676	mdanderson.org	37	chr2	182350641	182350641	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcaatggaaacaaacctcGttggaagtgacaaatatgct	9	7	0	1	rs35419274	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_000885	exon10	c.G1075T	p.V359F	AACCTCGTTGGAA		89	4	0.04	93	0	0				23	0	0				T	182350641	G	T	182350641	3	4	106	1	0	0	0	0	1	0	0	0	7921	1145	40	1	1113	1	ITGA4	2	182350641	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	1540288	182350641	60848732	7	7693											
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	228884665	228884665	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tccactgtgatggcttggctGagggatctagactctgcaag	13	9	2	3	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_030623	exon7	c.C905T	p.S302L	TTGGCTGAGGGAT		168	18	0.11	118	0	0				0	0					A	228884665	G	A	228884665	3	1	106	1	0	0	0	0	1	0	0	0	15103	1294	45	3	4221	3	SPHKAP	2	228884665	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	46534024	228884665	14314708	8	7694											
TREX1	11277	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	48508121	48508121	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttcgacatggaggccactGgcttgcccttctcccagccc	9	16	1	0	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_016381	exon1	c.G232A	p.G78S	GCCACTGGCTTGC		128	9	0.07	110	0	0				43	3	0.07				A	48508121	G	A	48508121	3	1	106	1	0	0	0	0	1	0	0	0	16536	1348	47	3	234	3	TREX1	3	48508121	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10		48508121	149514309	9	7695											
KLHDC8B	200942	mdanderson.org	37	chr3	49213207	49213207	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccccagtcaagccgtggaGgcactgtgtctgcgtgatgg	16	11	2	1	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_173546	exon6	c.G1038A	p.E346E	CGTGGAGGCACTG		50	3	0.06	64	0	0				49	0	0				A	49213207	G	A	49213207	2	1	106	1	0	0	0	0	0	0	0	1	8405	991	35	3		3	KLHDC8B	3	49213207	Silent	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	705086	49213207	148809223	10	7696											
IL17RD	54756	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	57132107	57132107	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gttgcaaatggcgacgtataGggaccggcctgacttgctcc	13	11	0	1	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_017563	exon12	c.C1624G	p.L542V	CGTATAGGGACCG		171	16	0.09	112	0	0				18	1	0.06				C	57132107	G	C	57132107	3	2	106	1	0	0	0	0	1	0	0	0	7685	991	35	5	603	5	IL17RD	3	57132107	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	7918900	57132107	140890323	11	7697											
GPR160	26996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	169802035	169802035	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aagcattaggttcactaaatAccacatctgcctatttactc	4	11	2	0	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_014373	exon4	c.A275T	p.Y92F	CTAAATACCACAT		165	41	0.25	198	0	0				26	12	0.46				T	169802035	A	T	169802035	3	4	106	1	0	0	0	0	1	0	0	0	6703	391	14	5	277	5	GPR160	3	169802035	Missense_Mutation	SNP	A	TCGA-WZ-A7V5-01A-11D-A435-10	112669928	169802035	28220395	12	7698											
FNDC3B	64778	broad.mit.edu	37	chr3	172062023	172062023	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaaccgtgtatcgcttccGggtgagggctctgaatgatg	15	8	1	3	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	FNDC3B	NM_001135095	exon19	c.G2225T	p.R742L	GCTTCCGGGTGAG		118	3	0.03	111	0	0		118		26	0	0				T	172062023	G	T	172062023	3	4	106	1	0	0	0	0	1	0	0	0	6002	1116	39	1	2295	1	FNDC3B	3	172062023	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	2259988	172062023	25960407	13	7699											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	55599321	55599321	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgattttggtctagccagagAcatcaagaatgattctaatt	8	6	3	4	rs121913507	bycluster	TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	KIT,colon,carcinoma,+1,932	KIT	NM_000222	exon17	c.A2447T	p.D816V	CCAGAGACATCAA		66	6	0.09	49	0	0		1	932	144	37	0.26				T	55599321	A	T	55599321	3	4	106	1	0	0	0	0	1	0	0	0	8371	275	10	5	2513	5	KIT	4	55599321	Missense_Mutation	SNP	A	TCGA-WZ-A7V5-01A-11D-A435-10		55599321	135554955	14	7700											
CAMK2D	817	broad.mit.edu;bcgsc.ca	37	chr4	114378550	114378550	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acattctgccactttccatcCcggcggtgccacacacgagt	8	16	1	0	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	CAMK2D	NM_172114	exon18	c.G1416T	p.R472R	TCCATCCCGGCGG		135	10	0.07	155	1	0.0064516129		55		27	4	0.15				A	114378550	C	A	114378550	2	1	106	1	0	0	0	0	0	0	0	1	2619	610	22	3		3	CAMK2D	4	114378550	Silent	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10	58779229	114378550	76775726	15	7701											
FAM149A	25854	mdanderson.org	37	chr4	187077206	187077206	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agcccggtaggaaatggcgcAaactcggacttcctcctgtt	11	12	0	0	rs4862653	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_015398	exon7	c.A436T	p.K146X	TGGCGCAAACTCG		85	3	0.04	96	0	0				4	0	0				T	187077206	A	T	187077206	4	4	106	1	0	0	0	0	0	1	0	0	5485	131	5	5	450	5	FAM149A	4	187077206	Nonsense_Mutation	SNP	A	TCGA-WZ-A7V5-01A-11D-A435-10	72698656	187077206	4077070	16	7702											
DNAH5	1767	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	13839638	13839638	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttgatatgcatatgacaCtgaaattcaaaaggtatatg	7	6	2	3	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	DNAH5	NM_001369	exon36	c.5710-1G>T	.	ATGACACTGAAAT		79	7	0.09	110	0	0		868		0	0					A	13839638	C	A	13839638	5	1	106	1	0	0	0	0	0	0	1	0	4632	579	20	3	8345	3	DNAH5	5	13839638	Splice_Site	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10		13839638	167075622	17	7703											
FGF10	2255	broad.mit.edu	37	chr5	44305289	44305289	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcttacagtcattgttaaaTtctttctgcaaaggaaaaac	6	7	3	0	rs200817529		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	FGF10,caecum,carcinoma,-2,1	FGF10	NM_004465	exon3	c.A435G	p.E145E	GTTAAATTCTTTC		158	5	0.03	152	0	0		40	1	0	0					C	44305289	T	C	44305289	2	2	106	1	0	0	0	0	0	0	0	1	5871	1490	52	4		4	FGF10	5	44305289	Silent	SNP	T	TCGA-WZ-A7V5-01A-11D-A435-10	30465651	44305289	136609971	18	7704											
PPT2	0	broad.mit.edu	37	chr6	32122905	32122905	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caagggttccgagaggctgtGgtccccatcatggcaaaggc	14	11	1	1	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	PPT2	NM_138717	exon3	c.G300T	p.V100V	GGCTGTGGTCCCC		127	4	0.03	118	0	0		19		33	0	0				T	32122905	G	T	32122905	2	4	106	1	0	0	0	0	0	0	0	1	12460	1335	47	3		3	PPT2	6	32122905	Silent	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10		32122905	138992162	19	7705											
KIF6	221458	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	39513397	39513397	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgatgaactttacgcatatCcgcgccaacctctaatctac	6	13	2	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_145027	exon11	c.G1249A	p.D417N	GCATATCCGCGCC		134	11	0.08	156	0	0				0	0					T	39513397	C	T	39513397	3	4	106	1	0	0	0	0	1	0	0	0	8349	855	30	3	1247	3	KIF6	6	39513397	Missense_Mutation	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10	7390492	39513397	131601670	20	7706											
APOBEC2	10930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	41029397	41029397	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcattctggtgggtcgactCttcatgtgggaggagccgga	15	9	4	0	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_006789	exon2	c.C462G	p.L154L	TCGACTCTTCATG		150	21	0.14	196	0	0				0	0					G	41029397	C	G	41029397	2	3	106	1	0	0	0	0	0	0	0	1	785	900	32	5		5	APOBEC2	6	41029397	Silent	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10	1516000	41029397	130085670	21	7707											
MCM9	254394	ucsc.edu	37	chr6	119136914	119136914	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagtcagtactgagtctggTttatcagcagagactgctgc	12	8	3	3	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	MCM9	NM_017696	exon12	c.A2505T	p.K835N	GTCTGGTTTATCA		20	1	0.05	18	0	0		73		19	7	0.37				A	119136914	T	A	119136914	3	1	106	1	0	0	0	0	1	0	0	0	9443	1740	60	5		5	MCM9	6	119136914	Missense_Mutation	SNP	T	TCGA-WZ-A7V5-01A-11D-A435-10	78107517	119136914	51978153	22	7708											
SERINC1	57515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	122766308	122766308	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtccactgacttttcatctCacgagagggttcatacctaa	7	11	3	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_020755	exon10	c.G1243A	p.E415K	TCATCTCACGAGA		81	9	0.11	77	0	0				117	16	0.14				T	122766308	C	T	122766308	3	4	106	1	0	0	0	0	1	0	0	0	14132	835	29	3	122	3	SERINC1	6	122766308	Missense_Mutation	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10	3629394	122766308	48348759	23	7709											
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	129609102	129609102	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tggcagctgtgacagcttgtCtggctcctgtctgatatgta	12	9	2	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_000426	exon19	c.C2648G	p.S883C	GCTTGTCTGGCTC		152	12	0.08	141	0	0				3	0	0				G	129609102	C	G	129609102	3	3	106	1	0	0	0	0	1	0	0	0	8644	913	32	5	2722	5	LAMA2	6	129609102	Missense_Mutation	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10	6842794	129609102	41505965	24	7710											
KIAA1244	57221	mdanderson.org	37	chr6	138655582	138655582	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacatctttgaggaaaccGcccaggtcagccccccgaga	10	14	2	3	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_020340	exon33	c.G5599T	p.A1867S	GAAACCGCCCAGG		46	3	0.07	54	0	0				0	0					T	138655582	G	T	138655582	3	4	106	1	0	0	0	0	1	0	0	0	8258	1087	38	1	5729	1	KIAA1244	6	138655582	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	9046480	138655582	32459485	25	7711											
UTRN	7402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr6	145148508	145148508	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcacactcatcagtatgtgGccagagcactatgagtgagt	10	9	3	3	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_007124	exon66	c.G9519A	p.W3173X	TATGTGGCCAGAG		70	9	0.13	71	0	0				32	2	0.06				A	145148508	G	A	145148508	4	1	106	1	0	0	0	0	0	1	0	0	17162	1212	42	2	9781	2	UTRN	6	145148508	Nonsense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	6492926	145148508	25966559	26	7712											
ULBP3	79465	bcgsc.ca	37	chr6	150390212	150390212	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgctgccattgtagaccaGgagcgcccgggacacaaggc	14	14	0	1	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	ULBP3	.	.	.	.	AGACCAGGAGCGC		46	4	0.09	40	0	0		22		1	0	0				T	150390212	G	T	150390212	3	4	106	1	0	0	0	0	1	0	0	0	17033	1015	35	3		3	ULBP3	6	150390212	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	5241704	150390212	20724855	27	7713											
ZNF273	10793	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr7	64389258	64389258	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agaagccctacaaatgtgaaGaatgtggcaaagcttttaac	9	7	0	3	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_021148	exon4	c.G1552T	p.E518X	TGTGAAGAATGTG		85	6	0.07	67	0	0				80	9	0.11				T	64389258	G	T	64389258	4	4	106	1	0	0	0	0	0	1	0	0	17865	943	33	3	1566	3	ZNF273	7	64389258	Nonsense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10		64389258	94749405	28	7714											
YWHAG	7532	broad.mit.edu	37	chr7	75959211	75959211	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggactccaccaccgtcgcccTtttctctccggtggccactt	8	18	1	0	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	YWHAG	NM_012479	exon2	c.A427G	p.R143G	TCGCCCTTTTCTC		179	5	0.03	136	0	0		24		621	0	0				C	75959211	T	C	75959211	3	2	106	1	0	0	0	0	1	0	0	0	17562	1608	56	4	320	4	YWHAG	7	75959211	Missense_Mutation	SNP	T	TCGA-WZ-A7V5-01A-11D-A435-10	11569953	75959211	83179452	29	7715											
TTC26	79989	broad.mit.edu	37	chr7	138874119	138874119	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcacaggtaacacccaaGtagaatacatgatccggatc	9	10	0	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	TTC26	NM_024926	exon18	c.G1606T	p.V536L	ACCCAAGTAGAAT		522	9	0.02	414	1	0.0024154589		50		18	0	0				T	138874119	G	T	138874119	3	4	106	1	0	0	0	0	1	0	0	0	16755	1029	36	3	1676	3	TTC26	7	138874119	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	62914908	138874119	20264544	30	7716											
EZH2	0	broad.mit.edu	37	chr7	148512600	148512600	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatggaaagatgctaacccTttttcagctgtatctttctg	8	8	3	1	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	EZH2	NM_004456	exon13	c.A1544G	p.K515R	TAACCCTTTTTCA		286	4	0.01	211	0	0		823		79	0	0				C	148512600	T	C	148512600	3	2	106	1	0	0	0	0	1	0	0	0	5362	1609	56	4	743	4	EZH2	7	148512600	Missense_Mutation	SNP	T	TCGA-WZ-A7V5-01A-11D-A435-10	9638481	148512600	10626063	31	7717											
KRBA1	84626	broad.mit.edu	37	chr7	149430561	149430561	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccaggtgaatcggctggggAggcgcccccaaggccctggg	17	14	0	1	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	KRBA1	.	.	.	.	CTGGGGAGGCGCC		54	9	0.17	47	4	0.085106383		68		17	1	0.06				G	149430561	A	G	149430561	3	3	106	1	0	0	0	0	1	0	0	0	8481	295	11	4	2579	4	KRBA1	7	149430561	Missense_Mutation	SNP	A	TCGA-WZ-A7V5-01A-11D-A435-10	917961	149430561	9708102	32	7718											
MFHAS1	9258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	8750110	8750110	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtgagcgagagcgcccagCtgggcgggcagggcgggcag	22	10	0	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_004225	exon1	c.G459C	p.Q153H	GCCCAGCTGGGCG		53	9	0.17	51	0	0				10	3	0.3				G	8750110	C	G	8750110	3	3	106	1	0	0	0	0	1	0	0	0	9570	796	28	5	2711	5	MFHAS1	8	8750110	Missense_Mutation	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10		8750110	137613912	33	7719											
MTMR7	9108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	17163456	17163456	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcttttgggtcaccatctaGattgccatatctataaaaca	5	9	4	1	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_004686	exon11	c.C1162G	p.L388V	CATCTAGATTGCC		88	20	0.23	62	0	0				9	4	0.44				C	17163456	G	C	17163456	3	2	106	1	0	0	0	0	1	0	0	0	9995	933	33	5	836	5	MTMR7	8	17163456	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	8413346	17163456	129200566	34	7720											
DUSP4	1846	mdanderson.org	37	chr8	29194794	29194794	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagatgatgctgcggcgctGcttaacgaactcgaaggcct	13	11	0	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_001394	exon4	c.C934A	p.Q312K	GGCGCTGCTTAAC		33	3	0.09	25	0	0				9	0	0				T	29194794	G	T	29194794	3	4	106	1	0	0	0	0	1	0	0	0	4853	1328	46	2	254	2	DUSP4	8	29194794	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	12031338	29194794	117169228	35	7721											
MAFA	389692	broad.mit.edu	37	chr8	144512336	144512338	+	In_Frame_Del	DEL	CGC	CGC	-													cgagccgccgccgccccccgCgccgccgccgccgccggtgc					novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	CGC	CGC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	MAFA	NM_201589	exon1	c.239_241del	p.80_81del	CCCCCGCGCCGCC		6	2	0.33	4	0	0		9		0	0					-	144512338	CGC	-	144512336	7	5	106	1	0	1	0	1	0	0	0	0	9202	768	27	0	824	0	MAFA	8	144512336	In_Frame_Del	DEL	CGC	TCGA-WZ-A7V5-01A-11D-A435-10	115317542	144512336	1851686	36	7722											
TIGD5	84948	bcgsc.ca	37	chr8	144681321	144681321	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggcacatatccccgcaccGctggagcagggcgtggtggc	16	14	0	0	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	TIGD5	NM_032862	exon1	c.G1248A	p.P416P	CGCACCGCTGGAG		45	4	0.09	45	0	0		22		25	0	0				A	144681321	G	A	144681321	2	1	106	1	0	0	0	0	0	0	0	1	15958	1074	38	1		1	TIGD5	8	144681321	Silent	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	168985	144681321	1682701	37	7723											
EPPK1	83481	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr8	144940450	144940450	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acgatgaggtccttctgcatGgcctggaagagggagatctg	15	8	2	3	rs56258403		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_031308	exon1	c.C6972G	p.A2324A	CTGCATGGCCTGG		167	10	0.06	121	0	0				43	3	0.07				C	144940450	G	C	144940450	2	2	106	1	0	0	0	0	0	0	0	1	5218	1335	47	5		5	EPPK1	8	144940450	Silent	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	259129	144940450	1423572	38	7724											
FREM1	158326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	14819320	14819320	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccacccttccgtgcagagGcaattcccgcagggagaggt	12	14	0	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_144966	exon15	c.C2458T	p.P820S	GCAGAGGCAATTC		85	8	0.09	76	0	0				0	0					A	14819320	G	A	14819320	3	1	106	1	0	0	0	0	1	0	0	0	6078	1203	42	2	4227	2	FREM1	9	14819320	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10		14819320	126394111	39	7725											
HAUS6	54801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	19070216	19070216	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaatcaaatttgttttaCctgttggctagatcatgtag	8	5	2	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_017645	exon13	c.1376+1G>T	.	GTTTTACCTGTTG		251	47	0.19	226	0	0				0	0					A	19070216	C	A	19070216	5	1	106	1	0	0	0	0	0	0	1	0	7010	521	18	3	1514	3	HAUS6	9	19070216	Splice_Site	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10	4250896	19070216	122143215	40	7726											
CNTFR	1271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr9	34552324	34552324	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agctggtggtgctggtcgtgGtctctggggaacatggggga	20	6	1	0	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_147164	exon9	c.C953T	p.T318I	GTCGTGGTCTCTG		10	5	0.5	13	0	0				5	2	0.4				A	34552324	G	A	34552324	3	1	106	1	0	0	0	0	1	0	0	0	3661	1261	44	3	173	3	CNTFR	9	34552324	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	15482108	34552324	106661107	41	7727											
TMEM38B	55151	hgsc.bcm.edu	37	chr9	108510399	108510399	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagttatcttcacattccaGcacacccagcatctggcaat	5	14	4	0	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_018112	exon5	c.G588T	p.Q196H	ATTCCAGCACACC		100	4	0.04	80	0	0				95	0	0				T	108510399	G	T	108510399	3	4	106	1	0	0	0	0	1	0	0	0	16219	962	34	2	606	2	TMEM38B	9	108510399	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	73958075	108510399	32703032	42	7728											
GTPBP4	23560	broad.mit.edu	37	chr10	1058562	1058562	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aattctggagtccaaagaaaAgaatacacagggacccagga	10	8	1	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	GTPBP4	NM_012341	exon14	c.A1502G	p.K501R	AAGAAAAGAATAC		192	4	0.02	199	0	0		57		166	0	0				G	1058562	A	G	1058562	3	3	106	1	0	0	0	0	1	0	0	0	6922	72	3	4	1556	4	GTPBP4	10	1058562	Missense_Mutation	SNP	A	TCGA-WZ-A7V5-01A-11D-A435-10		1058562	134476185	43	7729											
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	37508722	37508722	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcattttcttgagaggaaaaTgcaacatcatctcctaaaag	6	8	4	1	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_052997	exon34	c.T3914C	p.M1305T	GGAAAATGCAACA		74	14	0.19	90	0	0				0	0					C	37508722	T	C	37508722	3	2	106	1	0	0	0	0	1	0	0	0	654	1464	51	4	4048	4	ANKRD30A	10	37508722	Missense_Mutation	SNP	T	TCGA-WZ-A7V5-01A-11D-A435-10	36450160	37508722	98026025	44	7730											
TRIM3	10612	mdanderson.org	37	chr11	6478097	6478097	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attctcatgtggccgctccgGgaaggcctgtgccgccaatg	13	13	1	0	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_006458	exon7	c.C859A	p.P287T	GCTCCGGGAAGGC		38	3	0.08	53	0	0				19	0	0				T	6478097	G	T	6478097	3	4	106	1	0	0	0	0	1	0	0	0	16564	1232	43	3	1403	3	TRIM3	11	6478097	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10		6478097	128528419	45	7731											
SLC5A12	159963	mdanderson.org	37	chr11	26718754	26718754	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agccacaaaaagtcctggcaGtcctggcattgtggcaaata	10	10	0	0	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_178498	exon8	c.C997A	p.L333M	CTGGCAGTCCTGG		53	3	0.06	61	0	0				0	0					T	26718754	G	T	26718754	3	4	106	1	0	0	0	0	1	0	0	0	14718	1020	36	3	891	3	SLC5A12	11	26718754	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	20240657	26718754	108287762	46	7732											
DSCAML1	57453	mdanderson.org	37	chr11	117351904	117351904	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaccttgcacagtgagttGgatcaagccccggtcctccc	11	14	1	1	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_020693	exon13	c.C2821A	p.Q941K	TGAGTTGGATCAA		115	5	0.04	137	0	0				0	0					T	117351904	G	T	117351904	3	4	106	1	0	0	0	0	1	0	0	0	4795	1357	47	3	3604	3	DSCAML1	11	117351904	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	90633150	117351904	17654612	47	7733											
SRPR	6734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	126135872	126135872	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acttaccaatgagatgatcaCgcatcttgtccagcacagat	7	11	2	3	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	SRPR,NS,carcinoma,+1,1	SRPR	NM_003139	exon8	c.G1037C	p.R346P	TGATCACGCATCT		63	10	0.16	91	0	0		1	1	232	138	0.59				G	126135872	C	G	126135872	3	3	106	1	0	0	0	0	1	0	0	0	15217	536	19	5	907	5	SRPR	11	126135872	Missense_Mutation	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10	8783968	126135872	8870644	48	7734											
AQP6	363	broad.mit.edu	37	chr12	50369380	50369380	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtagaggtggggacagggGcaggggcaggggcggagccc	23	9	0	1	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	AQP6	NM_001652	exon4	c.G775A	p.A259T	ACAGGGGCAGGGG		217	5	0.02	107	0	0		25		2	0	0				A	50369380	G	A	50369380	3	1	106	1	0	0	0	0	1	0	0	0	827	1203	42	2	789	2	AQP6	12	50369380	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10		50369380	83482515	49	7735											
TBC1D15	64786	mdanderson.org	37	chr12	72266784	72266784	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtattctctatgctagaaagGtatttaagaaaaaaatgtgt	8	3	1	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_001146213	exon3	c.204+1G>T	.	AGAAAGGTATTTA		50	3	0.06	48	0	0				2	0	0				T	72266784	G	T	72266784	5	4	106	1	0	0	0	0	0	0	1	0	15660	1275	44	3	339	3	TBC1D15	12	72266784	Splice_Site	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	21897404	72266784	61585111	50	7736											
PUS1	80324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	132426156	132426156	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	atcagggtgaagggccagagCttcatgatgcatcagatccg	13	9	3	4	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_025215	exon5	c.C864G	p.S288R	CCAGAGCTTCATG		122	12	0.1	108	0	0				163	26	0.16				G	132426156	C	G	132426156	3	3	106	1	0	0	0	0	1	0	0	0	12881	796	28	5	882	5	PUS1	12	132426156	Missense_Mutation	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10	60159372	132426156	1425739	51	7737											
GPC5	2262	mdanderson.org	37	chr13	92051332	92051332	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacctggcccgtgggctttcGctgcctcctccttctggccc	11	18	1	0	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_004466	exon1	c.G32A	p.R11H	GCTTTCGCTGCCT		31	3	0.1	49	0	0				0	0					A	92051332	G	A	92051332	3	1	106	1	0	0	0	0	1	0	0	0	6640	1087	38	1	34	1	GPC5	13	92051332	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10		92051332	23118546	52	7738											
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr15	28474449	28474449	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcatccgattaaaagGcgggatcaaatcaacatcct	8	11	2	0	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_004667	exon34	c.C5164T	p.P1722S	TAAAAGGCGGGAT		233	25	0.11	214	0	0				11	1	0.09				A	28474449	G	A	28474449	3	1	106	1	0	0	0	0	1	0	0	0	7098	1203	42	2	9580	2	HERC2	15	28474449	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10		28474449	74056943	53	7739											
RYR3	6263	broad.mit.edu;mdanderson.org	37	chr15	34048566	34048566	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgaccaggagatcaaattcTttgccaaagtaagtggccct	10	9	2	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	RYR3	NM_001243996	exon59	c.T8575G	p.F2859V	AAATTCTTTGCCA		84	5	0.06	76	0	0		760		0	0					G	34048566	T	G	34048566	3	3	106	1	0	0	0	0	1	0	0	0	13821	1609	56	4	8809	4	RYR3	15	34048566	Missense_Mutation	SNP	T	TCGA-WZ-A7V5-01A-11D-A435-10	5574117	34048566	68482826	54	7740											
MYO5A	4644	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr15	52645822	52645822	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cttgagtgactcatattccaGttctgcacctctaatttgtg	7	10	3	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_000259	exon27	c.C3601G	p.L1201V	ATTCCAGTTCTGC		105	9	0.09	110	0	0				49	11	0.22				C	52645822	G	C	52645822	3	2	106	1	0	0	0	0	1	0	0	0	10125	1020	36	5	2026	5	MYO5A	15	52645822	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	18597256	52645822	49885570	55	7741											
CYP1A1	1543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	75015099	75015099	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctgaccattactgatgaGggtgaaggtgtagaggtcgg	16	6	1	5	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_000499	exon2	c.C340A	p.L114I	TGATGAGGGTGAA		70	10	0.14	49	0	0				0	0					T	75015099	G	T	75015099	3	4	106	1	0	0	0	0	1	0	0	0	4172	1000	35	3	1222	3	CYP1A1	15	75015099	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	22369277	75015099	27516293	56	7742											
AP3B2	8120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	83357926	83357926	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacctctatgttcttacagGccacgttcttcaccaccgcg	6	16	5	0	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_004644	exon3	c.C248T	p.A83V	TTACAGGCCACGT		125	15	0.12	105	0	0				26	9	0.35				A	83357926	G	A	83357926	3	1	106	1	0	0	0	0	1	0	0	0	741	1203	42	2	3020	2	AP3B2	15	83357926	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	8342827	83357926	19173466	57	7743											
AKAP13	11214	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	86076953	86076953	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaattcctagcaaccagtgCtggaaatcagcaggctttga	9	10	2	1	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	AKAP13	NM_007200	exon4	c.C320G	p.A107G	CCAGTGCTGGAAA		189	23	0.12	169	0	0		394		11	2	0.18				G	86076953	C	G	86076953	3	3	106	1	0	0	0	0	1	0	0	0	446	797	28	5	330	5	AKAP13	15	86076953	Missense_Mutation	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10	2719027	86076953	16454439	58	7744											
WDR24	84219	mdanderson.org	37	chr16	737638	737638	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctctcgcaccggtcgggacGccggatgtcccagagctgca	13	16	1	1	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_032259	exon2	c.C583T	p.R195C	CGGGACGCCGGAT		47	3	0.06	65	0	0				63	0	0				A	737638	G	A	737638	3	1	106	1	0	0	0	0	1	0	0	0	17340	1087	38	1	1821	1	WDR24	16	737638	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10		737638	89617115	59	7745											
ARHGAP17	55114	mdanderson.org	37	chr16	24950698	24950698	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccttacctgccgtcgcctgGgctcggcccctgctccagta	10	18	0	0	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_001006634	exon17	c.C1711A	p.P571T	CGCCTGGGCTCGG		32	3	0.09	32	0	0				42	0	0				T	24950698	G	T	24950698	3	4	106	1	0	0	0	0	1	0	0	0	864	1232	43	3	950	3	ARHGAP17	16	24950698	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	24213060	24950698	65404055	60	7746											
ADCY7	113	mdanderson.org	37	chr16	50334626	50334626	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actgggccactctgccccagGcaggtgcgggaggccacggg	17	14	1	0	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_001114	exon8	c.G1077T	p.K359N	CCCCAGGCAGGTG		44	3	0.07	55	0	0				16	0	0				T	50334626	G	T	50334626	3	4	106	1	0	0	0	0	1	0	0	0	298	1217	42	2	1107	2	ADCY7	16	50334626	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	25383928	50334626	40020127	61	7747											
RTN4RL1	146760	mdanderson.org	37	chr17	1840549	1840549	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccccggaaggtgcccggGcccagactccacagcttgtt	13	15	0	1	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_178568	exon2	c.C567A	p.G189G	GCCCGGGCCCAGA		27	3	0.11	28	0	0				12	0	0				T	1840549	G	T	1840549	2	4	106	1	0	0	0	0	0	0	0	1	13782	1190	42	2		2	RTN4RL1	17	1840549	Silent	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10		1840549	79354661	62	7748											
NLGN2	57555	mdanderson.org	37	chr17	7311730	7311730	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acggcctacgggcgagtgcgCggtgtgcggcgcgagctcaa	18	12	1	0	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_020795	exon1	c.C156T	p.R52R	AGTGCGCGGTGTG		22	3	0.14	34	0	0				4	0	0				T	7311730	C	T	7311730	2	4	106	1	0	0	0	0	0	0	0	1	10508	755	27	1		1	NLGN2	17	7311730	Silent	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10	5471181	7311730	73883480	63	7749											
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	7637852	7637852	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcccaggagactgtggagacAggagaaaatttaggtcctct	13	8	1	3	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_020877	exon6	c.A804T	p.T268T	GGAGACAGGAGAA		53	8	0.15	66	0	0				0	0					T	7637852	A	T	7637852	2	4	106	1	0	0	0	0	0	0	0	1	4630	175	7	5		5	DNAH2	17	7637852	Silent	SNP	A	TCGA-WZ-A7V5-01A-11D-A435-10	326122	7637852	73557358	64	7750											
DNAH2	146754	mdanderson.org	37	chr17	7726883	7726883	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gactcatgaactcctttgagCagtaccctcgtgactggcac	9	13	1	3	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_020877	exon73	c.C11266T	p.Q3756X	TTTGAGCAGTACC		75	4	0.05	79	0	0				1	0	0				T	7726883	C	T	7726883	4	4	106	1	0	0	0	0	0	1	0	0	4630	711	25	2	11556	2	DNAH2	17	7726883	Nonsense_Mutation	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10	89031	7726883	73468327	65	7751											
DNAH9	1770	bcgsc.ca;mdanderson.org	37	chr17	11583113	11583113	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttataaagaagagtgagagCggcttactcaagaaagttga	11	4	1	5	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	DNAH9,colon,carcinoma,0,1	DNAH9	NM_001372	exon18	c.C3393T	p.S1131S	TGAGAGCGGCTTA		44	5	0.11	70	0	0		695	1	0	0					T	11583113	C	T	11583113	2	4	106	1	0	0	0	0	0	0	0	1	4635	767	27	1		1	DNAH9	17	11583113	Silent	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10	3856230	11583113	69612097	66	7752											
RAI1	10743	ucsc.edu	37	chr17	17697105	17697105	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agctatgaccagcagcagcaGcagcagcagcagcagcagca	12	13	0	1	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	RAI1	NM_030665	exon3	c.G843A	p.Q281Q	GCAGCAGCAGCAG		36	4	0.11	58	1	0.0172413793		121		10	0	0				A	17697105	G	A	17697105	2	1	106	1	0	0	0	0	0	0	0	1	13058	962	34	2		2	RAI1	17	17697105	Silent	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	6113992	17697105	63498105	67	7753											
CCDC144B	284047	mdanderson.org	37	chr17	18513400	18513400	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtagctgtgattggcacagGtcatggagagtatcattccc	13	8	2	2	rs377459168	alternate_allele	TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	.	.	.	.	GCACAGGTCATGG		406	35	0.09	452	0	0				0	0					A	18513400	G	A	18513400	1	1	106	0	1	0	0	0	0	0	0	0	2796	1252	44	3		3	CCDC144B	17	18513400	RNA	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	816295	18513400	62681810	68	7754											
PIGS	94005	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	26897967	26897967	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaaacacgacagtgacaggCaccatgaggcggagctacag	13	10	0	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_033198	exon3	c.G189T	p.V63V	GACAGGCACCATG		154	10	0.06	134	0	0				40	7	0.18				A	26897967	C	A	26897967	2	1	106	1	0	0	0	0	0	0	0	1	11945	697	25	2		2	PIGS	17	26897967	Silent	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10	8384567	26897967	54297243	69	7755											
PSMD11	5717	broad.mit.edu	37	chr17	30771555	30771555	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggtaagatggcggcggcggCggtggtggagttccagagag	21	7	0	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	PSMD11	NM_002815	exon1	c.C14T	p.A5V	CGGCGGCGGTGGT		224	7	0.03	184	2	0.0108695652		41		98	0	0				T	30771555	C	T	30771555	3	4	106	1	0	0	0	0	1	0	0	0	12742	768	27	1	16	1	PSMD11	17	30771555	Missense_Mutation	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10	3873588	30771555	50423655	70	7756											
JUP	3728	mdanderson.org	37	chr17	39925795	39925795	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggacggctcggccagtcGctgcaggttggtggcctgcc	17	13	0	0	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_002230	exon3	c.C343A	p.R115R	CCAGTCGCTGCAG		42	3	0.07	43	0	0				660	0	0				T	39925795	G	T	39925795	2	4	106	1	0	0	0	0	0	0	0	1	8015	1095	38	1		1	JUP	17	39925795	Silent	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	9154240	39925795	41269415	71	7757											
GFAP	2670	mdanderson.org	37	chr17	42989051	42989051	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cgcgctcaccgtgccgcgcaGagactccaggtcgcaggtca	13	16	2	1	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_002055	exon5	c.C895A	p.L299M	CGCGCAGAGACTC		35	3	0.09	41	0	0				0	0					T	42989051	G	T	42989051	3	4	106	1	0	0	0	0	1	0	0	0	6378	933	33	3	552	3	GFAP	17	42989051	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	3063256	42989051	38206159	72	7758											
MPO	4353	ucsc.edu;bcgsc.ca	37	chr17	56355398	56355398	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccacgaaggaagtgagcgCgttgatctggttgcggatgg	17	7	1	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	MPO,NS,carcinoma,0,1	MPO	NM_000250	exon7	c.G994T	p.A332S	TGAGCGCGTTGAT		36	4	0.11	41	0	0		114	1	3	0	0				A	56355398	C	A	56355398	3	1	106	1	0	0	0	0	1	0	0	0	9780	768	27	1	1267	1	MPO	17	56355398	Missense_Mutation	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10	13366347	56355398	24839812	73	7759											
USP32	84669	mdanderson.org	37	chr17	58343352	58343352	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttacaggaatatcatcagtGcggttgtccttccagacttc	8	11	2	1	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_032582	exon8	c.C912A	p.R304R	ATCAGTGCGGTTG		46	3	0.07	63	0	0				48	0	0				T	58343352	G	T	58343352	2	4	106	1	0	0	0	0	0	0	0	1	17122	1306	46	2		2	USP32	17	58343352	Silent	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	1987954	58343352	22851858	74	7760											
BRIP1	83990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	59934456	59934456	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgccatttctttcagaaggTggtgtgcttggatagttgaa	13	5	2	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_032043	exon4	c.A342G	p.P114P	AGAAGGTGGTGTG		152	26	0.17	137	0	0				10	3	0.3				C	59934456	T	C	59934456	2	2	106	1	0	0	0	0	0	0	0	1	1516	1683	59	4		4	BRIP1	17	59934456	Silent	SNP	T	TCGA-WZ-A7V5-01A-11D-A435-10	1591104	59934456	21260754	75	7761											
ACE	1636	mdanderson.org	37	chr17	61574511	61574511	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctcagctcgctcagaaggGcccctcccagacagcggccg	12	18	2	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_000789	exon25	c.G3705T	p.G1235G	AGAAGGGCCCCTC		23	3	0.13	31	0	0				207	0	0				T	61574511	G	T	61574511	2	4	106	1	0	0	0	0	0	0	0	1	136	1190	42	2		2	ACE	17	61574511	Silent	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	1640055	61574511	19620699	76	7762											
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	76471541	76471541	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agatgtgagccacggcgtccTcaaacagcacctgcagaaac	10	13	1	3	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_173628	exon54	c.A8330G	p.E2777G	GCGTCCTCAAACA		78	7	0.09	42	0	0				0	0					C	76471541	T	C	76471541	3	2	106	1	0	0	0	0	1	0	0	0	4629	1551	54	4	5170	4	DNAH17	17	76471541	Missense_Mutation	SNP	T	TCGA-WZ-A7V5-01A-11D-A435-10	14897030	76471541	4723669	77	7763											
LRRC45	201255	mdanderson.org	37	chr17	79981644	79981644	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacctggccacgcaaagccTgacggtggagacctgcaggg	16	12	0	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_144999	exon1	c.T125C	p.L42P	AAAGCCTGACGGT		16	2	0.13	24	0	0				52	0	0				C	79981644	T	C	79981644	3	2	106	1	0	0	0	0	1	0	0	0	9046	1580	55	4	127	4	LRRC45	17	79981644	Missense_Mutation	SNP	T	TCGA-WZ-A7V5-01A-11D-A435-10	3510103	79981644	1213566	78	7764											
BSG	682	mdanderson.org	37	chr19	571563	571563	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacaatgaagcagtcggacGcgtctccccaagaaaggtaa	10	12	1	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_198591	exon1	c.G16T	p.A6S	TCGGACGCGTCTC		35	3	0.09	34	0	0				10	0	0				T	571563	G	T	571563	3	4	106	1	0	0	0	0	1	0	0	0	1531	1087	38	1	18	1	BSG	19	571563	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10		571563	58557420	79	7765											
BSG	682	mdanderson.org	37	chr19	577807	577807	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgccgctgtcccagcagaGgtgggtggggggcagtgtgg	22	9	0	1	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_001728	exon2	c.G101T	p.R34M	AGCAGAGGTGGGT		42	3	0.07	22	0	0				3	0	0				T	577807	G	T	577807	3	4	106	1	0	0	0	0	1	0	0	0	1531	1000	35	3	143	3	BSG	19	577807	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	6244	577807	58551176	80	7766											
ABCA7	10347	hgsc.bcm.edu	37	chr19	1047523	1047523	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggaggagcagggcgagggCgcgcagtggcacaacgtggg	21	9	0	0	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	ABCA7,rectum,carcinoma,0,1	ABCA7	NM_019112	exon16	c.C2139T	p.G713G	CGAGGGCGCGCAG		17	4	0.24	11	2	0.1818181818		0	1	4	3	0.75				T	1047523	C	T	1047523	2	4	106	1	0	0	0	0	0	0	0	1	37	755	27	1		1	ABCA7	19	1047523	Silent	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10	469716	1047523	58081460	81	7767											
NACC1	112939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	13249085	13249085	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cccaaggtcaaggtgctcaaGgctgaggatgacgcctacac	12	12	2	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_052876	exon6	c.G1449C	p.K483N	GCTCAAGGCTGAG		74	16	0.22	74	0	0				150	45	0.3				C	13249085	G	C	13249085	3	2	106	1	0	0	0	0	1	0	0	0	10182	991	35	5	1467	5	NACC1	19	13249085	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	12201562	13249085	45879898	82	7768											
CD97	976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	14517723	14517723	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ctaccgtctggaagctcactCagaagttttctgaaatcaat	7	10	5	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_078481	exon17	c.C2158G	p.Q720E	CTCACTCAGAAGT		99	18	0.18	81	0	0				61	5	0.08				G	14517723	C	G	14517723	3	3	106	1	0	0	0	0	1	0	0	0	3071	827	29	5	2224	5	CD97	19	14517723	Missense_Mutation	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10	1268638	14517723	44611260	83	7769											
NOTCH3	4854	broad.mit.edu;mdanderson.org	37	chr19	15276316	15276316	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ccaagtctgtagagcggtttCggatgagaatctaggacaga	13	7	2	3	rs372834264		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	NOTCH3	NM_000435	exon31	c.G5678A	p.R1893Q	CGGTTTCGGATGA		23	3	0.13	20	0	0		340		47	4	0.09				T	15276316	C	T	15276316	3	4	106	1	0	0	0	0	1	0	0	0	10596	884	31	1	1299	1	NOTCH3	19	15276316	Missense_Mutation	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10	758593	15276316	43852667	84	7770											
WDR88	126248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	33647335	33647335	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtacaagctcctgggataAaaacttaaaaatatggaacg	9	6	0	0	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_173479	exon7	c.A884G	p.K295R	GGGATAAAAACTT		77	13	0.17	74	0	0				0	0					G	33647335	A	G	33647335	3	3	106	1	0	0	0	0	1	0	0	0	17394	14	1	4	910	4	WDR88	19	33647335	Missense_Mutation	SNP	A	TCGA-WZ-A7V5-01A-11D-A435-10	18371019	33647335	25481648	85	7771											
ZFP30	22835	broad.mit.edu;mdanderson.org	37	chr19	38125922	38125922	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gctgatggtaagtaagatgtGaatgttgtctaaatgccttt	11	4	1	3	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	ZFP30	NM_014898	exon6	c.C1520A	p.S507X	AGATGTGAATGTT		108	5	0.05	78	0	0		68		38	0	0				T	38125922	G	T	38125922	4	4	106	1	0	0	0	0	0	1	0	0	17701	1294	45	3	43	3	ZFP30	19	38125922	Nonsense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	4478587	38125922	21003061	86	7772											
MEGF8	1954	mdanderson.org	37	chr19	42853771	42853771	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtatgcagtagagatccagGgccagctcaatggctcggca	13	10	1	1	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	MEGF8_ENST00000334370,NS,carcinoma,-1,9	MEGF8_ENST00000334370	NM_001271938	exon14	c.G2419T	p.G807C	ATCCAGGGCCAGC		32	3	0.09	32	0	0		-1	9	4	0	0				T	42853771	G	T	42853771	3	4	106	1	0	0	0	0	1	0	0	0	9512	1232	43	3	2268	3	MEGF8	19	42853771	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	4727849	42853771	16275212	87	7773											
HRC	3270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	49658348	49658348	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tctgctgatgcctcctcggaGagcccggcgactccagtgct	12	15	1	2	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_002152	exon1	c.C147A	p.L49L	CTCGGAGAGCCCG		67	10	0.15	64	0	0				1	0	0				T	49658348	G	T	49658348	2	4	106	1	0	0	0	0	0	0	0	1	7392	929	33	3		3	HRC	19	49658348	Silent	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	6804577	49658348	9470635	88	7774											
MCM8	84515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	5935892	5935892	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgcatgggtttggcaataCatcaggtaactatttgtctt	9	7	2	0	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_032485	exon5	c.C481T	p.H161Y	GCAATACATCAGG		109	16	0.15	129	0	0				40	9	0.23				T	5935892	C	T	5935892	3	4	106	1	0	0	0	0	1	0	0	0	9442	478	17	3	495	3	MCM8	20	5935892	Missense_Mutation	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10		5935892	57089628	89	7775											
RRBP1	6238	mdanderson.org	37	chr20	17596600	17596600	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcggccgtgagcttctgccGctgtgtctgctcatcctcca	10	16	3	1	rs372710056		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_001042576	exon23	c.C2623T	p.R875W	TCTGCCGCTGTGT		40	3	0.08	26	0	0				280	1	0				A	17596600	G	A	17596600	3	1	106	1	0	0	0	0	1	0	0	0	13729	1086	38	1	326	1	RRBP1	20	17596600	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	11660708	17596600	45428920	90	7776											
ZNF217	7764	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	52198674	52198675	+	Frame_Shift_Del	DEL	AG	AG	-													gcaccttgcggtgctcaattAgactttctttatttggaaat					novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	AG	AG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	ZNF217	NM_006526	exon1	c.692_693del	p.231_231del	TCAATTAGACTTT		102	10	0.1	88	0	0		227		91	0	0				-	52198675	AG	-	52198674	7	5	106	1	0	1	0	1	0	0	0	0	17829	420	15	0	2470	0	ZNF217	20	52198674	Frame_Shift_Del	DEL	AG	TCGA-WZ-A7V5-01A-11D-A435-10	34602074	52198674	10826846	91	7777											
LAMA5	3911	mdanderson.org	37	chr20	60890262	60890262	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgatcttcttgcttgtctcGtctgtggtgggcagagggca	15	9	4	1	rs201926183	bycluster;alternate_allele	TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_005560	exon59	c.C7869A	p.D2623E	TGTCTCGTCTGTG		40	3	0.08	46	0	0				121	0	0				T	60890262	G	T	60890262	3	4	106	1	0	0	0	0	1	0	0	0	8647	1159	40	1	3306	1	LAMA5	20	60890262	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	8691588	60890262	2135258	92	7778											
APP	351	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr21	27327999	27327999	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcgcacatgctcgaaatgcTttagggtgtgctgtctgtcc	12	10	1	0	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_000484	exon12	c.A1529G	p.K510R	AAATGCTTTAGGG		171	8	0.05	141	0	0				354	27	0.08				C	27327999	T	C	27327999	3	2	106	1	0	0	0	0	1	0	0	0	812	1609	56	4	811	4	APP	21	27327999	Missense_Mutation	SNP	T	TCGA-WZ-A7V5-01A-11D-A435-10		27327999	20801896	93	7779											
ATP5O	539	ucsc.edu	37	chr21	35288044	35288044	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctctcacctgccgggagagCccggacactgctggggcagc	14	15	2	1	rs144779561	bycluster;by1000genomes;alternate_allele	TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	ATP5O	NM_001697	exon1	c.G24A	p.G8G	GGAGAGCCCGGAC		41	4	0.1	30	0	0		9		696	1	0				T	35288044	C	T	35288044	2	4	106	1	0	0	0	0	0	0	0	1	1160	726	26	2		2	ATP5O	21	35288044	Silent	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10	7960045	35288044	12841851	94	7780											
COL6A2	1292	mdanderson.org	37	chr21	47552285	47552285	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	caacgacagtctgcacgagtCggcgcactccatgcgcaagc	11	15	1	0	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_001849	exon28	c.C2879T	p.S960L	ACGAGTCGGCGCA		32	3	0.09	30	0	0				298	0	0				T	47552285	C	T	47552285	3	4	106	1	0	0	0	0	1	0	0	0	3723	893	31	1	3315	1	COL6A2	21	47552285	Missense_Mutation	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10	12264241	47552285	577610	95	7781											
CECR2	27443	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	18016810	18016810	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agatcgagcgaagaggagaaAgctcagggaagaaagggcat	16	5	1	4	rs369723376	alternate_allele	TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	CECR2	.	.	.	.	GGAGAAAGCTCAG		102	16	0.16	87	1	0.0114942529		233		51	15	0.29				T	18016810	A	T	18016810	3	4	106	1	0	0	0	0	1	0	0	0	3228	72	3	5	1097	5	CECR2	22	18016810	Missense_Mutation	SNP	A	TCGA-WZ-A7V5-01A-11D-A435-10		18016810	33287756	96	7782											
MEI1	150365	mdanderson.org	37	chr22	42128256	42128256	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catcctgtggtagggatcgaGgcagtggtgaggagcctgca	17	8	0	1	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_152513	exon10	c.G1104T	p.E368D	GATCGAGGCAGTG		42	3	0.07	54	0	0				0	0					T	42128256	G	T	42128256	3	4	106	1	0	0	0	0	1	0	0	0	9514	991	35	3	1142	3	MEI1	22	42128256	Missense_Mutation	SNP	G	TCGA-WZ-A7V5-01A-11D-A435-10	24111446	42128256	9176310	97	7783											
WNK3	65267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	54265469	54265469	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagatgaatggctccacCgcttgacacagcagcaggat	11	12	0	3	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_001002838	exon18	c.G3715A	p.G1239S	CTCCACCGCTTGA		73	18	0.25	46	0	0				19	8	0.42				T	54265469	C	T	54265469	3	4	106	1	0	0	0	0	1	0	0	0	17438	652	23	1	1715	1	WNK3	23	54265469	Missense_Mutation	SNP	C	TCGA-WZ-A7V5-01A-11D-A435-10		54265469	101005091	98	7784											
AGRN	375790	broad.mit.edu	37	chr1	955613	955613	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccgctccttgtggtggccGcgtgcgtcctgcccggagcc	15	16	0	0	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	AGRN	NM_198576	exon1	c.G61T	p.A21S	GTGGCCGCGTGCG		5	2	0.4	12	0	0		110		0	0					T	955613	G	T	955613	3	4	107	1	0	0	0	0	1	0	0	0	394	1087	38	1	63	1	AGRN	1	955613	Missense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10		955613	248295008	1	7785											
RNF186	0	broad.mit.edu	37	chr1	20142036	20142036	+	RNA	DEL	T	T	-													attaattttttttatttaacTtttttttttttttttgagac					novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	RNF186	.	.	.	.	TTTAACTTTTTTT		6	2	0.33	5	0	0		14		0	0					-	20142036	T	-	20142036	6	5	107	0	1	1	0	1	0	0	0	0	13520	1624	56	0		0	RNF186	1	20142036	RNA	DEL	T	TCGA-WZ-A8D5-01A-11D-A435-10	19186423	20142036	229108585	2	7786											
GPN2	54707	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	27216507	27216507	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcaggaactcactcatgccCaggcagtacgtggtcttccc	10	15	3	0	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	GPN2,NS,carcinoma,-2,1	GPN2	NM_018066	exon1	c.G81A	p.L27L	CATGCCCAGGCAG		20	5	0.25	21	0	0		18	1	16	3	0.19				T	27216507	C	T	27216507	2	4	107	1	0	0	0	0	0	0	0	1	6657	581	21	3		3	GPN2	1	27216507	Silent	SNP	C	TCGA-WZ-A8D5-01A-11D-A435-10	7074471	27216507	222034114	3	7787											
FCRL2	79368	mdanderson.org	37	chr1	157716685	157716685	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctccagaagtgtcctgatGtttgctgttaaggaaaaagt	10	6	1	2	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_030764	exon11	c.C1464A	p.N488K	CCTGATGTTTGCT		22	2	0.09	22	0	0				12	0	0				T	157716685	G	T	157716685	3	4	107	1	0	0	0	0	1	0	0	0	5827	1368	48	3	70	3	FCRL2	1	157716685	Missense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	130500178	157716685	91533936	4	7788											
FBXO11	80204	mdanderson.org	37	chr2	48132711	48132711	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgctgctgctgctgctgcTgcggcggcggcggaggctgc	19	13	0	0	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001190274	exon1	c.A149C	p.Q50P	TGCTGCTGCGGCG		8	3	0.38	8	0	0				1	0	0				G	48132711	T	G	48132711	3	3	107	1	0	0	0	0	1	0	0	0	5759	1580	55	4	2816	4	FBXO11	2	48132711	Missense_Mutation	SNP	T	TCGA-WZ-A8D5-01A-11D-A435-10		48132711	195066662	5	7789											
ALS2CR12	130540	mdanderson.org	37	chr2	202195505	202195505	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgccttcaaggctgctttGtagttgttctccaactcact	7	12	4	0	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_139163	exon8	c.C576A	p.Y192X	TGCTTTGTAGTTG		77	4	0.05	70	0	0				0	0					T	202195505	G	T	202195505	4	4	107	1	0	0	0	0	0	1	0	0	549	1372	48	3	793	3	ALS2CR12	2	202195505	Nonsense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	154062794	202195505	41003868	6	7790											
CRYBG3	131544	mdanderson.org	37	chr3	97662072	97662072	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaatttctattttaggaGgaaattattgtgacaagact	9	3	1	2	rs200227709	bycluster;byfrequency;alternate_allele	TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_153605	exon22	c.G8827T	p.G2943X	TTAGGAGGAAATT		35	3	0.09	35	0	0				18	0	0				T	97662072	G	T	97662072	4	4	107	1	0	0	0	0	0	1	0	0	3936	1001	35	3	3057	3	CRYBG3	3	97662072	Nonsense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10		97662072	100360358	7	7791											
MUC4	4585	hgsc.bcm.edu	37	chr3	195505877	195505877	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtcggtgacaggaagagGggtggtgtcacctgtggatg	19	5	1	2	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	MUC4_ENST00000463781,NS,carcinoma,+1,1	MUC4_ENST00000463781	NM_018406	exon2	c.C12574T	p.P4192S	GAAGAGGGGTGGT		69	8	0.12	74	2	0.027027027		1	1	3	0	0				A	195505877	G	A	195505877	3	1	107	1	0	0	0	0	1	0	0	0	10025	1232	43	3		3	MUC4	3	195505877	Missense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	97843805	195505877	2516553	8	7792											
SGTB	54557	mdanderson.org	37	chr5	65008803	65008803	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cataccttacagaaggaactGgtaaacatttctgtcaaagg	8	8	2	1	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	SGTB,NS,meningioma,0,1	SGTB	NM_019072	exon3	c.C189A	p.T63T	GGAACTGGTAAAC		49	3	0.06	77	0	0		0	1	22	0	0				T	65008803	G	T	65008803	2	4	107	1	0	0	0	0	0	0	0	1	14279	1335	47	3		3	SGTB	5	65008803	Silent	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10		65008803	115906457	9	7793											
PAIP2	51247	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr5	138700433	138700433	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctctggaagatcttgtgGtaaaaagttatttttcatct	7	6	4	1	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	PAIP2	NM_016480	exon3	c.318+1G>A	.	CTTGTGGTAAAAA		71	4	0.06	94	0	0		10		36	9	0.25				A	138700433	G	A	138700433	5	1	107	1	0	0	0	0	0	0	1	0	11443	1275	44	3	325	3	PAIP2	5	138700433	Splice_Site	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	73691630	138700433	42214827	10	7794											
DIAPH1	1729	mdanderson.org	37	chr5	140953766	140953766	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttccagttcctttgtcaGcttggcaacctacagaaata	6	11	2	1	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_005219	exon16	c.C1651A	p.L551M	TTGTCAGCTTGGC		41	3	0.07	56	0	0				73	0	0				T	140953766	G	T	140953766	3	4	107	1	0	0	0	0	1	0	0	0	4546	962	34	2	2219	2	DIAPH1	5	140953766	Missense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	2253333	140953766	39961494	11	7795											
UBD	10537	hgsc.bcm.edu;broad.mit.edu	37	chr6	29524057	29524058	+	Frame_Shift_Ins	INS	-	-	T													agaccggacatgttctttgaINStttttttcacgctgtcatat					novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	UBD	NM_006398	exon2	c.98_99insA	p.I33fs	TCTTTGATTTTTT		134	10	0.07	133	0	0		13		1253	0	0				T	29524058	-	T	29524057	7	5	107	1	0	1	1	0	0	0	0	0	16903	333	12	0	403	0	UBD	6	29524057	Frame_Shift_Ins	INS	-	TCGA-WZ-A8D5-01A-11D-A435-10		29524057	141591010	12	7796											
NCOA7	135112	broad.mit.edu;mdanderson.org	37	chr6	126249822	126249822	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagatgctgatttataccacGgacgaagcaactcttgcagc	9	10	1	2	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	NCOA7	NM_001199619	exon17	c.G2734T	p.G912X	TACCACGGACGAA		61	3	0.05	83	0	0		92		33	0	0				T	126249822	G	T	126249822	4	4	107	1	0	0	0	0	0	1	0	0	10280	1117	39	1	2792	1	NCOA7	6	126249822	Nonsense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	96725765	126249822	44865245	13	7797											
SKAP2	8935	hgsc.bcm.edu;mdanderson.org	37	chr7	26883702	26883702	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctgaggctaatgaaataGtgtctggaggcccagcaaaa	12	7	2	2	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_003930	exon4	c.C254A	p.T85N	GAAATAGTGTCTG		76	4	0.05	54	0	0				21	0	0				T	26883702	G	T	26883702	3	4	107	1	0	0	0	0	1	0	0	0	14410	1029	36	3	861	3	SKAP2	7	26883702	Missense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10		26883702	132254961	14	7798											
RABGEF1	27342	mdanderson.org	37	chr7	66273943	66273943	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtcaggaggattttgatcGctacatgtctggccagacct	11	9	2	2	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	RABGEF1,colon,carcinoma,+1,2	RABGEF1	NM_014504	exon9	c.G1148T	p.R383L	TTGATCGCTACAT		95	5	0.05	73	0	0		1	2	94	0	0				T	66273943	G	T	66273943	3	4	107	1	0	0	0	0	1	0	0	0	13017	1087	38	1	1178	1	RABGEF1	7	66273943	Missense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	39390241	66273943	92864720	15	7799											
RP1L1	94137	ucsc.edu	37	chr8	10474009	10474009	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcagcctcgcttctcctgGcatttttcatggctggggtt	10	11	3	0	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	RP1L1	NM_178857	exon3	c.C698T	p.A233V	CTCCTGGCATTTT		43	4	0.09	42	0	0		453		0	0					A	10474009	G	A	10474009	3	1	107	1	0	0	0	0	1	0	0	0	13584	1203	42	2	6512	2	RP1L1	8	10474009	Missense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10		10474009	135890013	16	7800											
HR	55806	mdanderson.org	37	chr8	21981246	21981246	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcggggacatcgccagtGggtgttgaagagtccatggt	17	8	0	2	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_018411	exon6	c.C1831A	p.H611N	GCCAGTGGGTGTT		22	3	0.14	28	0	0				0	0					T	21981246	G	T	21981246	3	4	107	1	0	0	0	0	1	0	0	0	7387	1348	47	3	1794	3	HR	8	21981246	Missense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	11507237	21981246	124382776	17	7801											
SYBU	55638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	110587804	110587804	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgtcactatctcatcgaaCaaatctgtgctgttggctat	8	10	3	0	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001099752	exon8	c.G1323A	p.L441L	ATCGAACAAATCT		153	24	0.16	133	0	0				1	0	0				T	110587804	C	T	110587804	2	4	107	1	0	0	0	0	0	0	0	1	15482	477	17	3		3	SYBU	8	110587804	Silent	SNP	C	TCGA-WZ-A8D5-01A-11D-A435-10	88606558	110587804	35776218	18	7802											
ARMC4	55130	ucsc.edu	37	chr10	28250581	28250581	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgacgatggtcaggtggttcTtcatcttcctcactttctga	9	10	6	2	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	ARMC4	NM_018076	exon10	c.A1302T	p.E434D	TGGTTCTTCATCT		153	14	0.09	127	5	0.0393700787		177		0	0					A	28250581	T	A	28250581	3	1	107	1	0	0	0	0	1	0	0	0	952	1606	56	5	1876	5	ARMC4	10	28250581	Missense_Mutation	SNP	T	TCGA-WZ-A8D5-01A-11D-A435-10		28250581	107284166	19	7803											
PDCD11	22984	hgsc.bcm.edu;broad.mit.edu	37	chr10	105160253	105160253	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agagagaaagcagcaagtccGcaagagagaagtttgaaatc	12	6	0	5	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_014976	exon3	c.G202T	p.A68S	AAGTCCGCAAGAG		74	4	0.05	79	0	0				118	0	0				T	105160253	G	T	105160253	3	4	107	1	0	0	0	0	1	0	0	0	11663	1087	38	1	208	1	PDCD11	10	105160253	Missense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	76909672	105160253	30374494	20	7804											
FANK1	92565	mdanderson.org	37	chr10	127585221	127585221	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagccgaccatggagcccCagagtaagggaggcccgggc	16	13	0	1	rs202109621		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_145235	exon1	c.C10T	p.Q4X	GAGCCCCAGAGTA		29	3	0.1	15	0	0				7	0	0				T	127585221	C	T	127585221	4	4	107	1	0	0	0	0	0	1	0	0	5704	595	21	3	12	3	FANK1	10	127585221	Nonsense_Mutation	SNP	C	TCGA-WZ-A8D5-01A-11D-A435-10	22424968	127585221	7949526	21	7805											
JAKMIP3	282973	mdanderson.org	37	chr10	133976881	133976881	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgggacgcccagatcctgCgggagcgcatggagctgctg	17	12	0	1	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	JAKMIP3,NS,carcinoma,0,1	JAKMIP3	NM_001105521	exon19	c.C2383A	p.R795R	ATCCTGCGGGAGC		12	2	0.17	25	0	0		0	1	0	0					A	133976881	C	A	133976881	2	1	107	1	0	0	0	0	0	0	0	1	7985	759	27	1		1	JAKMIP3	10	133976881	Silent	SNP	C	TCGA-WZ-A8D5-01A-11D-A435-10	6391660	133976881	1557866	22	7806											
KRTAP5-2	440021	broad.mit.edu	37	chr11	1619052	1619052	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggacacagcagctggactgGcagcagcagggcttgcagca	16	11	0	0	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	KRTAP5-2	NM_001004325	exon1	c.C429A	p.C143X	GGACTGGCAGCAG		68	3	0.04	96	0	0		38		0	0					T	1619052	G	T	1619052	4	4	107	1	0	0	0	0	0	1	0	0	8600	1195	42	2	108	2	KRTAP5-2	11	1619052	Nonsense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10		1619052	133387464	23	7807											
CDKN1C	1028	mdanderson.org	37	chr11	2906488	2906488	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtccacttcggtccactGcaggcgtccagggccccgca	12	17	0	0	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_000076	exon1	c.C232A	p.Q78K	TCCACTGCAGGCG		34	3	0.09	35	0	0				7	0	0				T	2906488	G	T	2906488	3	4	107	1	0	0	0	0	1	0	0	0	3182	1328	46	2	726	2	CDKN1C	11	2906488	Missense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	1287436	2906488	132100028	24	7808											
ARAP1	116985	mdanderson.org	37	chr11	72404840	72404840	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaccttctccgcaaagtgCagggggcgctctggggagag	16	11	2	1	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001040118	exon28	c.G3705A	p.L1235L	AAAGTGCAGGGGG		29	3	0.1	53	0	0				112	0	0				T	72404840	C	T	72404840	2	4	107	1	0	0	0	0	0	0	0	1	835	697	25	2		2	ARAP1	11	72404840	Silent	SNP	C	TCGA-WZ-A8D5-01A-11D-A435-10	69498352	72404840	62601676	25	7809											
TMPRSS4	56649	mdanderson.org	37	chr11	117982461	117982461	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgcctgtgtccagcctgtGggaagagcctgaagaccccc	12	14	1	3	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_019894	exon8	c.G589T	p.G197W	GCCTGTGGGAAGA		53	3	0.06	53	0	0				0	0					T	117982461	G	T	117982461	3	4	107	1	0	0	0	0	1	0	0	0	16308	1348	47	3	619	3	TMPRSS4	11	117982461	Missense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	45577621	117982461	17024055	26	7810											
HYOU1	10525	mdanderson.org	37	chr11	118925732	118925732	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tagagaacgagaataattgaGaaccatgcccaacacttcct	7	10	0	3	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001130991	exon6	c.C460A	p.L154I	AATTGAGAACCAT		35	3	0.09	44	0	0				124	0	0				T	118925732	G	T	118925732	3	4	107	1	0	0	0	0	1	0	0	0	7513	942	33	3	2623	3	HYOU1	11	118925732	Missense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	943271	118925732	16080784	27	7811											
ERC1	23085	broad.mit.edu	37	chr12	1292505	1292505	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcatcctcaggactgaaaaAggactcacggcttaagacac	10	11	2	2	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	ERC1	NM_178040	exon11	c.A2075G	p.K692R	TGAAAAAGGACTC		705	7	0.01	428	2	0.0046728972		95		54	0	0				G	1292505	A	G	1292505	3	3	107	1	0	0	0	0	1	0	0	0	5238	72	3	4	2113	4	ERC1	12	1292505	Missense_Mutation	SNP	A	TCGA-WZ-A8D5-01A-11D-A435-10		1292505	132559390	28	7812											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	25380276	25380276	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcattgcactgtactcctctTgacctgctgtgtcgagaata	8	11	2	2	rs121913240	bycluster	TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	KRAS_ENST00000256078,colon,carcinoma,+1,429	KRAS_ENST00000256078	NM_004985	exon3	c.A182G	p.Q61R	TCCTCTTGACCTG		152	11	0.07	101	0	0		1	429	86	2	0.02				C	25380276	T	C	25380276	3	2	107	1	0	0	0	0	1	0	0	0	8480	1812	63	4	520	4	KRAS	12	25380276	Missense_Mutation	SNP	T	TCGA-WZ-A8D5-01A-11D-A435-10	24087771	25380276	108471619	29	7813											
VDR	7421	mdanderson.org	37	chr12	48240170	48240170	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acatgctcctcctcatgcaaGttcagcttcttcagtcccac	5	16	4	0	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001017536	exon9	c.C1122A	p.N374K	ATGCAAGTTCAGC		36	3	0.08	45	0	0				2	0	0				T	48240170	G	T	48240170	3	4	107	1	0	0	0	0	1	0	0	0	17208	1020	36	3	319	3	VDR	12	48240170	Missense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	22859894	48240170	85611725	30	7814											
KRT84	3890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	52779018	52779018	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaaccaaagccagggccacCaaagccatagccaatgccac	8	15	0	0	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_033045	exon1	c.G352A	p.G118S	GGCCACCAAAGCC		94	7	0.07	117	0	0				0	0					T	52779018	C	T	52779018	3	4	107	1	0	0	0	0	1	0	0	0	8540	594	21	3	1486	3	KRT84	12	52779018	Missense_Mutation	SNP	C	TCGA-WZ-A8D5-01A-11D-A435-10	4538848	52779018	81072877	31	7815											
CCDC41	51134	hgsc.bcm.edu	37	chr12	94796963	94796963	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tacttcatctagattcctaaAacgttctctcattggagttt	5	9	4	1	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_016122	exon5	c.T400C	p.F134L	TCCTAAAACGTTC		65	4	0.06	47	0	0				19	0	0				G	94796963	A	G	94796963	3	3	107	1	0	0	0	0	1	0	0	0	2832	14	1	4	1757	4	CCDC41	12	94796963	Missense_Mutation	SNP	A	TCGA-WZ-A8D5-01A-11D-A435-10	42017945	94796963	39054932	32	7816											
STOML3	161003	mdanderson.org	37	chr13	39542626	39542626	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aacatctttgatttccactcGggccacccggatcccccaca	6	17	1	1	rs202188494	bycluster;alternate_allele	TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	STOML3,NS,carcinoma,+1,2	STOML3	NM_145286	exon6	c.C562A	p.R188R	CCACTCGGGCCAC		47	3	0.06	75	0	0		1	2	0	0					T	39542626	G	T	39542626	2	4	107	1	0	0	0	0	0	0	0	1	15370	1124	39	1		1	STOML3	13	39542626	Silent	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10		39542626	75627252	33	7817											
LRCH1	23143	mdanderson.org	37	chr13	47275277	47275277	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ataagttcatccaaagatcaGgacatggatatagcaatgat	8	6	2	2	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	LRCH1_ENST00000311191,NS,lymphoid_neoplasm,+1,2	LRCH1_ENST00000311191	NM_001164211	exon11	c.G1335T	p.Q445H	AGATCAGGACATG		41	3	0.07	68	0	0		1	2	12	0	0				T	47275277	G	T	47275277	3	4	107	1	0	0	0	0	1	0	0	0	8976	991	35	3	1377	3	LRCH1	13	47275277	Missense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	7732651	47275277	67894601	34	7818											
SUGT1	10910	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	53239790	53239791	+	Frame_Shift_Del	DEL	AG	AG	-													aggtatgactggtatcaaacAgaatctcaagtagtcattac					novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	AG	AG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	SUGT1	NM_001130912	exon10	c.536_537del	p.179_179del	TCAAACAGAATCT		146	22	0.15	197	0	0		37		61	0	0				-	53239791	AG	-	53239790	7	5	107	1	0	1	0	1	0	0	0	0	15424	175	7	0	575	0	SUGT1	13	53239790	Frame_Shift_Del	DEL	AG	TCGA-WZ-A8D5-01A-11D-A435-10	5964513	53239790	61930088	35	7819											
F7	2155	mdanderson.org	37	chr13	113770083	113770083	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccacgaggggtactctctGctggcagacggggtgtcctg	16	11	1	1	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_000131	exon6	c.G540T	p.L180L	CTCTCTGCTGGCA		44	3	0.07	93	0	0				0	0					T	113770083	G	T	113770083	2	4	107	1	0	0	0	0	0	0	0	1	5377	1306	46	2		2	F7	13	113770083	Silent	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	60530293	113770083	1399795	36	7820											
GPHB5	122876	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	63779821	63779821	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcaatataggggggttccaGaatgggtttctgtccccata	11	8	2	1	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	GPHB5	.	.	.	.	GTTCCAGAATGGG		209	36	0.17	201	1	0.0049751244		57		0	0					A	63779821	G	A	63779821	1	1	107	0	1	0	0	0	0	0	0	0	6648	933	33	3		3	GPHB5	14	63779821	RNA	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10		63779821	43569719	37	7821											
CREBBP	1387	bcgsc.ca	37	chr16	3777942	3777942	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtggtgtggcgaaggctggGgctgtatccgtggtgacggg	21	7	0	1	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	CREBBP,colon,carcinoma,+1,2	CREBBP	NM_004380	exon31	c.C7106A	p.P2369H	GGCTGGGGCTGTA		44	4	0.09	67	0	0		546	2	224	0	0				T	3777942	G	T	3777942	3	4	107	1	0	0	0	0	1	0	0	0	3884	1232	43	3	226	3	CREBBP	16	3777942	Missense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10		3777942	86576811	38	7822											
XYLT1	64131	mdanderson.org	37	chr16	17228331	17228331	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catcccatatagggctcaccGgcagctgttctccccatccg	8	17	2	0	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_022166	exon9	c.C2026T	p.R676X	CTCACCGGCAGCT		24	2	0.08	31	0	0				2	0	0				A	17228331	G	A	17228331	4	1	107	1	0	0	0	0	0	1	0	0	17522	1130	39	1	869	1	XYLT1	16	17228331	Nonsense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	13450389	17228331	73126422	39	7823											
ACD	65057	mdanderson.org	37	chr16	67694279	67694279	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgcacgagggcgtcctgCtcgggggcctgtgtgcagac	17	13	0	1	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001082487	exon1	c.G103A	p.A35T	GTCCTGCTCGGGG		40	3	0.08	51	0	0				0	0					T	67694279	C	T	67694279	3	4	107	1	0	0	0	0	1	0	0	0	135	797	28	2	1579	2	ACD	16	67694279	Missense_Mutation	SNP	C	TCGA-WZ-A8D5-01A-11D-A435-10	50465948	67694279	22660474	40	7824											
ZCCHC14	23174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	87451243	87451243	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agggctgagcccgcgctgccCgcatgggagcagtgaggcaa	17	12	0	2	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	ZCCHC14,caecum,carcinoma,-1,2	ZCCHC14	NM_015144	exon8	c.G795A	p.A265A	GCTGCCCGCATGG		47	6	0.13	74	0	0		-1	2	6	0	0				T	87451243	C	T	87451243	2	4	107	1	0	0	0	0	0	0	0	1	17641	639	23	1		1	ZCCHC14	16	87451243	Silent	SNP	C	TCGA-WZ-A8D5-01A-11D-A435-10	19756964	87451243	2903510	41	7825											
RNMTL1	55178	mdanderson.org	37	chr17	686391	686391	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagatcctgctggaaggtcGcaggctcatttcagacgctc	12	11	2	2	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_018146	exon2	c.G383A	p.R128H	AAGGTCGCAGGCT		48	3	0.06	91	0	0				45	0	0				A	686391	G	A	686391	3	1	107	1	0	0	0	0	1	0	0	0	13558	1087	38	1	389	1	RNMTL1	17	686391	Missense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10		686391	80508819	42	7826											
TMEM132E	124842	mdanderson.org	37	chr17	32962085	32962085	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacgctggcaggactggaGccaggcaccaccccctttaa	11	15	0	0	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_207313	exon8	c.G1686T	p.E562D	ACTGGAGCCAGGC		36	3	0.08	79	0	0				0	0					T	32962085	G	T	32962085	3	4	107	1	0	0	0	0	1	0	0	0	16107	962	34	2	1716	2	TMEM132E	17	32962085	Missense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	32275694	32962085	48233125	43	7827											
STARD3	10948	mdanderson.org	37	chr17	37817269	37817269	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggcgcattgagcggcgcaGggaccgatacttgtcatcag	14	12	2	1	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_006804	exon13	c.G1070T	p.R357M	GGCGCAGGGACCG		46	3	0.07	74	0	0				86	0	0				T	37817269	G	T	37817269	3	4	107	1	0	0	0	0	1	0	0	0	15312	1000	35	3	1129	3	STARD3	17	37817269	Missense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	4855184	37817269	43377941	44	7828											
GRB7	2886	mdanderson.org	37	chr17	37903113	37903113	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaccgcggcatcctgccgtGcttgctgcgccattgctgca	12	15	0	0	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001242442	exon15	c.G1631T	p.C544F	TGCCGTGCTTGCT		22	3	0.14	35	0	0				36	0	0				T	37903113	G	T	37903113	3	4	107	1	0	0	0	0	1	0	0	0	6799	1319	46	2	1616	2	GRB7	17	37903113	Missense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	85844	37903113	43292097	45	7829											
KRTAP1-1	81851	hgsc.bcm.edu;broad.mit.edu	37	chr17	39197304	39197304	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctgggcggcaccacctgaTacgggtgctcacagctccac	12	15	2	1	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	KRTAP1-1,NS,malignant_melanoma,0,1	KRTAP1-1	NM_030967	exon1	c.A346G	p.I116V	ACCTGATACGGGT		70	3	0.04	75	1	0.0133333333		0	1	0	0					C	39197304	T	C	39197304	3	2	107	1	0	0	0	0	1	0	0	0	8544	1406	49	4	191	4	KRTAP1-1	17	39197304	Missense_Mutation	SNP	T	TCGA-WZ-A8D5-01A-11D-A435-10	1294191	39197304	41997906	46	7830											
TMC6	11322	mdanderson.org	37	chr17	76120700	76120700	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcccatgatgaaggccaccaGcagcagcagcaggagggcat	14	12	0	2	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001127198	exon8	c.C796G	p.L266V	CCACCAGCAGCAG		31	3	0.1	58	0	0				40	0	0				C	76120700	G	C	76120700	3	2	107	1	0	0	0	0	1	0	0	0	16048	962	34	5	1673	5	TMC6	17	76120700	Missense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	36923396	76120700	5074510	47	7831											
TSPAN10	83882	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr17	79612648	79612648	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcctaccaggactggcagCagaacctgtgagtcttggag	12	12	1	2	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	TSPAN10	.	.	.	.	TGGCAGCAGAACC		32	4	0.13	40	0	0		21		4	0	0				T	79612648	C	T	79612648	1	4	107	0	1	0	0	0	0	0	0	0	16694	711	25	2		2	TSPAN10	17	79612648	RNA	SNP	C	TCGA-WZ-A8D5-01A-11D-A435-10	3491948	79612648	1582562	48	7832											
DOT1L	84444	mdanderson.org	37	chr19	2216567	2216567	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgaagcagaacacgccccaGtacctggcctcacccctgga	9	17	1	1	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	DOT1L_ENST00000398665,NS,carcinoma,0,2	DOT1L_ENST00000398665	NM_032482	exon20	c.G2211T	p.Q737H	GCCCCAGTACCTG		29	3	0.1	21	0	0		0	2	51	0	0				T	2216567	G	T	2216567	3	4	107	1	0	0	0	0	1	0	0	0	4736	1020	36	3	2289	3	DOT1L	19	2216567	Missense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10		2216567	56912416	49	7833											
DOT1L	84444	mdanderson.org	37	chr19	2226654	2226654	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctggacggcctggctggGctgaagggcgagggcagccg	20	11	0	1	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_032482	exon27	c.G4134T	p.G1378G	GGCTGGGCTGAAG		15	3	0.2	12	0	0				58	0	0				T	2226654	G	T	2226654	2	4	107	1	0	0	0	0	0	0	0	1	4736	1190	42	2		2	DOT1L	19	2226654	Silent	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	10087	2226654	56902329	50	7834											
SEMA6B	10501	mdanderson.org	37	chr19	4555566	4555566	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttgtctccgacgggctgcAgggtgtctatctgcagggac	15	10	3	0	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_032108	exon7	c.T482A	p.L161Q	GGCTGCAGGGTGT		47	3	0.06	85	0	0				21	0	0				T	4555566	A	T	4555566	3	4	107	1	0	0	0	0	1	0	0	0	14093	188	7	5	2228	5	SEMA6B	19	4555566	Missense_Mutation	SNP	A	TCGA-WZ-A8D5-01A-11D-A435-10	2328912	4555566	54573417	51	7835											
KDM4B	23030	broad.mit.edu	37	chr19	5047517	5047517	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtggaacatcgggagcctcCggaccatcctggacatggtg	14	11	0	0	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	KDM4B	NM_015015	exon6	c.C463T	p.R155W	AGCCTCCGGACCA		83	3	0.04	74	0	0		120		12	0	0				T	5047517	C	T	5047517	3	4	107	1	0	0	0	0	1	0	0	0	8172	643	23	1	477	1	KDM4B	19	5047517	Missense_Mutation	SNP	C	TCGA-WZ-A8D5-01A-11D-A435-10	491951	5047517	54081466	52	7836											
ZNF358	140467	mdanderson.org	37	chr19	7585211	7585211	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttcggccagagctcagcGctgctccagcacctgcacgt	11	17	1	1	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	ZNF358,NS,carcinoma,+1,1	ZNF358	NM_018083	exon2	c.G1083T	p.A361A	CTCAGCGCTGCTC		27	3	0.11	34	0	0		1	1	90	0	0				T	7585211	G	T	7585211	2	4	107	1	0	0	0	0	0	0	0	1	17923	1074	38	1		1	ZNF358	19	7585211	Silent	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	2537694	7585211	51543772	53	7837											
OLFM2	93145	bcgsc.ca	37	chr19	10024251	10024251	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagttggtgaccatggccaTggtgctcagcacggccccga	13	14	1	1	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	OLFM2	.	.	.	.	TGGCCATGGTGCT		24	4	0.17	22	0	0		42		5	3	0.6				C	10024251	T	C	10024251	3	2	107	1	0	0	0	0	1	0	0	0	10900	1479	51	4		4	OLFM2	19	10024251	Missense_Mutation	SNP	T	TCGA-WZ-A8D5-01A-11D-A435-10	2439040	10024251	49104732	54	7838											
ANKLE1	126549	broad.mit.edu	37	chr19	17397500	17397501	+	Frame_Shift_Del	DEL	TT	TT	-													tgtgtgtgtgtgtgtgtgtgTttgtgtgtgtgtgtgtgtgt					rs10606406	alternate_allele	TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	TT	TT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	ANKLE1	.	.	.	.	TGTGTGTTTGTGT		7	6	0.86	14	0	0		27		2	0	0				-	17397501	TT	-	17397500	7	5	107	1	0	1	0	1	0	0	0	0	628	1740	60	0		0	ANKLE1	19	17397500	Frame_Shift_Del	DEL	TT	TCGA-WZ-A8D5-01A-11D-A435-10	7373249	17397500	41731483	55	7839											
EMP3	2014	mdanderson.org	37	chr19	48833719	48833719	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctacatccacctacggaagCgggagtgagcgccccgcctc	11	16	1	1	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001425	exon5	c.C484T	p.R162W	CGGAAGCGGGAGT		45	3	0.07	50	0	0				110	0	0				T	48833719	C	T	48833719	3	4	107	1	0	0	0	0	1	0	0	0	5131	759	27	1	498	1	EMP3	19	48833719	Missense_Mutation	SNP	C	TCGA-WZ-A8D5-01A-11D-A435-10	31436219	48833719	10295264	56	7840											
ALDH16A1	126133	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	49967466	49967466	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caacgggacgccccgcggggGcagcgccagtgtgtggagcg	19	13	0	0	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_153329	exon10	c.G1277A	p.G426D	GCGGGGGCAGCGC		31	6	0.19	43	0	0				167	56	0.34				A	49967466	G	A	49967466	3	1	107	1	0	0	0	0	1	0	0	0	485	1203	42	2	1315	2	ALDH16A1	19	49967466	Missense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	1133747	49967466	9161517	57	7841											
KLK11	11012	broad.mit.edu	37	chr19	51528037	51528037	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccttgatgatcctggtctcTccccctacaagccctggagg	9	16	1	2	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	KLK11	NM_144947	exon3	c.A150G	p.G50G	GGTCTCTCCCCCT		60	3	0.05	89	1	0.0112359551		28		0	0					C	51528037	T	C	51528037	2	2	107	1	0	0	0	0	0	0	0	1	8441	1538	54	4		4	KLK11	19	51528037	Silent	SNP	T	TCGA-WZ-A8D5-01A-11D-A435-10	1560571	51528037	7600946	58	7842											
SPTLC3	55304	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr20	13107267	13107267	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gattatttacgggttcactcGcatagtgctgtttatgcttc	9	8	1	0	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_018327	exon9	c.G1182T	p.S394S	TCACTCGCATAGT		106	5	0.05	124	0	0				1	0	0				T	13107267	G	T	13107267	2	4	107	1	0	0	0	0	0	0	0	1	15180	1074	38	1		1	SPTLC3	20	13107267	Silent	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10		13107267	49918253	59	7843											
TOX2	84969	hgsc.bcm.edu	37	chr20	42694570	42694570	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgcgtccccgccgccgccAccctccttcccgctcagccc	8	24	1	0	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	TOX2_ENST00000348077,colon,carcinoma,0,2	TOX2_ENST00000348077	NM_001098797	exon7	c.A1179G	p.P393P	GCCGCCACCCTCC		53	3	0.06	48	0	0		0	2	18	2	0.11				G	42694570	A	G	42694570	2	3	107	1	0	0	0	0	0	0	0	1	16438	146	6	4		4	TOX2	20	42694570	Silent	SNP	A	TCGA-WZ-A8D5-01A-11D-A435-10	29587303	42694570	20330950	60	7844											
SNAI1	6615	mdanderson.org	37	chr20	48600448	48600448	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	caaccccaccgcctcgctgcCaatgctcatctgggactctg	8	18	3	0	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_005985	exon2	c.C170A	p.P57Q	CGCTGCCAATGCT		44	3	0.07	52	0	0				92	0	0				A	48600448	C	A	48600448	3	1	107	1	0	0	0	0	1	0	0	0	14879	594	21	3	176	3	SNAI1	20	48600448	Missense_Mutation	SNP	C	TCGA-WZ-A8D5-01A-11D-A435-10	5905878	48600448	14425072	61	7845											
CEBPB	1051	mdanderson.org	37	chr20	48808332	48808332	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctacgcgggggccgcgccGgcgccctcgcaggtcaagag	17	15	1	1	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_005194	exon1	c.G762T	p.P254P	CGCGCCGGCGCCC		28	3	0.11	25	0	0				92	0	0				T	48808332	G	T	48808332	2	4	107	1	0	0	0	0	0	0	0	1	3222	1103	39	1		1	CEBPB	20	48808332	Silent	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	207884	48808332	14217188	62	7846											
ZDHHC8	29801	mdanderson.org	37	chr22	20128208	20128208	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggaatgtggagcacgtGctgtgtagccccctggcgcc	16	11	0	0	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001185024	exon6	c.G729T	p.V243V	GCACGTGCTGTGT		46	3	0.07	51	0	0				14	0	0				T	20128208	G	T	20128208	2	4	107	1	0	0	0	0	0	0	0	1	17678	1306	46	2		2	ZDHHC8	22	20128208	Silent	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10		20128208	31176358	63	7847											
HMGXB4	10042	hgsc.bcm.edu;bcgsc.ca	37	chr22	35661554	35661554	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gggcatagtgaaaaaaaaaaGaaaaaagaagagaaggacaa	11	2	0	4	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001003681	exon5	c.G1173A	p.K391K	AAAAAAGAAAAAA		146	12	0.08	104	0	0				32	1	0.03				A	35661554	G	A	35661554	2	1	107	1	0	0	0	0	0	0	0	1	7279	933	33	3		3	HMGXB4	22	35661554	Silent	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	15533346	35661554	15643012	64	7848											
SPIN2B	474343	broad.mit.edu	37	chrX	57146615	57146615	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtgcttgagctaagaccaTccccctccattcatccttag	7	14	1	2	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	SPIN2B	NM_001006683	exon2	c.A448G	p.M150V	AGACCATCCCCCT		406	6	0.01	376	1	0.0026595745		11		12	0	0				C	57146615	T	C	57146615	3	2	107	1	0	0	0	0	1	0	0	0	15109	1435	50	4	332	4	SPIN2B	23	57146615	Missense_Mutation	SNP	T	TCGA-WZ-A8D5-01A-11D-A435-10		57146615	98123945	65	7849											
AMMECR1	9949	mdanderson.org	37	chrX	109561071	109561071	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gatccccccgccgccgccgcCgcagccctgggggggagaga	16	18	0	1	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_015365	exon1	c.G229T	p.G77C	CGCCGCCGCAGCC		50	4	0.08	36	1	0.0277777778				12	0	0				A	109561071	C	A	109561071	3	1	107	1	0	0	0	0	1	0	0	0	574	652	23	1	796	1	AMMECR1	23	109561071	Missense_Mutation	SNP	C	TCGA-WZ-A8D5-01A-11D-A435-10	52414456	109561071	45709489	66	7850											
PDZD4	57595	mdanderson.org	37	chrX	153069641	153069641	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgccggccatggcccgccGcagggggctctcgggcaggg	19	14	1	0	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_032512	exon8	c.C1477T	p.R493W	CCCGCCGCAGGGG		21	3	0.14	38	0	0				8	0	0				A	153069641	G	A	153069641	3	1	107	1	0	0	0	0	1	0	0	0	11749	1086	38	1	836	1	PDZD4	23	153069641	Missense_Mutation	SNP	G	TCGA-WZ-A8D5-01A-11D-A435-10	43508570	153069641	2200919	67	7851											
MEGF6	1953	mdanderson.org	37	chr1	3411238	3411238	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctgccgttgctggcgtgGcacaggcccccatttctgca	12	15	1	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001409	exon31	c.C3939T	p.C1313C	GGCGTGGCACAGG		39	3	0.08	54	0	0				8	0	0				A	3411238	G	A	3411238	2	1	108	1	0	0	0	0	0	0	0	1	9511	1195	42	2		2	MEGF6	1	3411238	Silent	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10		3411238	245839383	1	7852											
AGTRAP	57085	broad.mit.edu	37	chr1	11810282	11810282	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgcccggccctgccccggGccttcctcgtgcctgggagg	15	18	0	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	AGTRAP	.	.	.	.	CCCCGGGCCTTCC		24	6	0.25	29	0	0		9		227	2	0.01				T	11810282	G	T	11810282	3	4	108	1	0	0	0	0	1	0	0	0	400	1218	42	2		2	AGTRAP	1	11810282	Missense_Mutation	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	8399044	11810282	237440339	2	7853											
C1orf177	163747	mdanderson.org	37	chr1	55271837	55271837	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gctcatggctggaaccgcgtCggctccacggccaccaagtg	13	15	1	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001110533	exon1	c.C48T	p.V16V	CCGCGTCGGCTCC		11	2	0.18	13	0	0				0	0					T	55271837	C	T	55271837	2	4	108	1	0	0	0	0	0	0	0	1	2030	871	31	1		1	C1orf177	1	55271837	Silent	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10	43461555	55271837	193978784	3	7854											
CELF3	11189	mdanderson.org	37	chr1	151678746	151678746	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgctgCtgttgaggtggtggtggggg	20	7	0	1	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_007185	exon10	c.G1080A	p.Q360Q	CTGCTGCTGTTGA		29	3	0.1	27	0	0				12	0	0				T	151678746	C	T	151678746	2	4	108	1	0	0	0	0	0	0	0	1	3239	796	28	2		2	CELF3	1	151678746	Silent	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10	96406909	151678746	97571875	4	7855											
B3GALT2	8707	broad.mit.edu	37	chr1	193150315	193150315	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatttggatgtccagtaccTttttcattgtaaatacttcc	6	8	1	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	B3GALT2	NM_003783	exon2	c.A378G	p.K126K	AGTACCTTTTTCA		109	4	0.04	120	0	0		44		0	0					C	193150315	T	C	193150315	2	2	108	1	0	0	0	0	0	0	0	1	1246	1606	56	4		4	B3GALT2	1	193150315	Silent	SNP	T	TCGA-X3-A8G4-01A-11D-A435-10	41471569	193150315	56100306	5	7856											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	21230922	21230922	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatttgtgattcatgtgttcCctcatctgagaatctggggc	10	8	4	2	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_000384	exon26	c.G8818A	p.G2940R	GTGTTCCCTCATC		176	50	0.28	217	0	0				12	6	0.5				T	21230922	C	T	21230922	3	4	108	1	0	0	0	0	1	0	0	0	782	632	22	3	4889	3	APOB	2	21230922	Missense_Mutation	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10		21230922	221968451	6	7857											
DNMT3A	1788	mdanderson.org	37	chr2	25462078	25462078	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggcatcaatcatcacagGgttggactacaaaacaggag	10	8	3	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_175629	exon20	c.C2329A	p.P777T	TCACAGGGTTGGA		53	3	0.06	53	0	0				97	0	0				T	25462078	G	T	25462078	3	4	108	1	0	0	0	0	1	0	0	0	4703	1232	43	3	425	3	DNMT3A	2	25462078	Missense_Mutation	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	4231156	25462078	217737295	7	7858											
POLE4	56655	broad.mit.edu;bcgsc.ca	37	chr2	75185871	75185871	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagggacctgctggggaggCagcggcctcgcagccccagg	19	13	0	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	POLE4	NM_019896	exon1	c.C65T	p.A22V	GGGAGGCAGCGGC		98	24	0.24	100	1	0.01		2		67	19	0.28				T	75185871	C	T	75185871	3	4	108	1	0	0	0	0	1	0	0	0	12246	710	25	2	67	2	POLE4	2	75185871	Missense_Mutation	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10	49723793	75185871	168013502	8	7859											
MAP3K2	10746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	128066276	128066276	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagacagatggtctgaagccGtttgctggccccaaaatctc	11	11	2	3	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_006609	exon15	c.C1519T	p.R507W	GAAGCCGTTTGCT		81	22	0.27	82	0	0				8	2	0.25				A	128066276	G	A	128066276	3	1	108	1	0	0	0	0	1	0	0	0	9299	1144	40	1	348	1	MAP3K2	2	128066276	Missense_Mutation	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	52880405	128066276	115133097	9	7860											
CYTIP	9595	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	158287440	158287440	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	atatcaaagtgaacatttccGaggagcaggcattctgattc	9	8	2	2	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	CYTIP	NM_004288	exon4	c.C314T	p.S105L	ATTTCCGAGGAGC		166	6	0.04	187	0	0		45		32	0	0				A	158287440	G	A	158287440	3	1	108	1	0	0	0	0	1	0	0	0	4230	1059	37	1	785	1	CYTIP	2	158287440	Missense_Mutation	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	30221164	158287440	84911933	10	7861											
BAZ2B	29994	broad.mit.edu	37	chr2	160310243	160310243	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccaaagactgggtggctgAccattgggaaggcactcgac	14	10	0	2	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	BAZ2B	NM_013450	exon4	c.T215C	p.V72A	TGGCTGACCATTG		113	4	0.04	97	4	0.0412371134		196		4	0	0				G	160310243	A	G	160310243	3	3	108	1	0	0	0	0	1	0	0	0	1330	275	10	4	6427	4	BAZ2B	2	160310243	Missense_Mutation	SNP	A	TCGA-X3-A8G4-01A-11D-A435-10	2022803	160310243	82889130	11	7862											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	170115533	170115533	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaaaacatgaacacacttAcccggcaaaaggatgaacta	8	9	0	2	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_004525	exon18	c.2513+2T>G	.	ACACTTACCCGGC		222	67	0.3	186	0	0				0	0					C	170115533	A	C	170115533	5	2	108	1	0	0	0	0	0	0	1	0	9000	405	14	4	11704	4	LRP2	2	170115533	Splice_Site	SNP	A	TCGA-X3-A8G4-01A-11D-A435-10	9805290	170115533	73083840	12	7863											
HDAC11	79885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	13545733	13545733	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aatgcaggcaccgacatcctCgagggggaccgccttggggg	16	12	0	0	rs145222745		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_024827	exon9	c.C789T	p.L263L	CATCCTCGAGGGG		125	28	0.22	127	0	0	0			28	8	0.29				T	13545733	C	T	13545733	2	4	108	1	0	0	0	0	0	0	0	1	7046	871	31	1		1	HDAC11	3	13545733	Silent	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10		13545733	184476697	13	7864											
TREX1	11277	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	48508314	48508314	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agccagcgagatcacaggtcTgagcacagctgtgctggcag	14	11	2	2	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	TREX1,lower_third,carcinoma,-1,1	TREX1	NM_016381	exon1	c.T425C	p.L142P	CAGGTCTGAGCAC		61	7	0.11	43	0	0		-1	1	62	3	0.05				C	48508314	T	C	48508314	3	2	108	1	0	0	0	0	1	0	0	0	16536	1580	55	4	427	4	TREX1	3	48508314	Missense_Mutation	SNP	T	TCGA-X3-A8G4-01A-11D-A435-10	34962581	48508314	149514116	14	7865											
USP19	10869	mdanderson.org	37	chr3	49154692	49154692	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgggcctcctgcttagcccGgtggggctcagggcctggct	16	15	1	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001199160	exon6	c.C709A	p.R237R	TAGCCCGGTGGGG		30	3	0.1	19	0	0				43	0	0				T	49154692	G	T	49154692	2	4	108	1	0	0	0	0	0	0	0	1	17109	1131	39	1		1	USP19	3	49154692	Silent	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	646378	49154692	148867738	15	7866											
CCDC54	84692	broad.mit.edu	37	chr3	107096725	107096725	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ataccaaaagtccaggaaaaGactgacttgtatcaaaaaca	6	8	1	2	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	CCDC54	NM_032600	exon1	c.G291T	p.K97N	GGAAAAGACTGAC		145	4	0.03	116	0	0		56		0	0					T	107096725	G	T	107096725	3	4	108	1	0	0	0	0	1	0	0	0	2844	933	33	3	293	3	CCDC54	3	107096725	Missense_Mutation	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	57942033	107096725	90925705	16	7867											
MGLL	11343	mdanderson.org	37	chr3	127440001	127440001	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgtgaggatggcgatggcGcctccctgtaatgcagaatg	15	10	0	2	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001256585	exon5	c.C405T	p.G135G	GATGGCGCCTCCC		32	3	0.09	35	0	0				22	0	0				A	127440001	G	A	127440001	2	1	108	1	0	0	0	0	0	0	0	1	9604	1074	38	1		1	MGLL	3	127440001	Silent	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	20343276	127440001	70582429	17	7868											
EPHB1	2047	mdanderson.org	37	chr3	134960009	134960009	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gggagggaagatccctgtgaGatggacagctccagaggcca	16	9	0	3	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_004441	exon13	c.G2366T	p.R789I	CTGTGAGATGGAC		79	5	0.06	92	0	0				8	0	0				T	134960009	G	T	134960009	3	4	108	1	0	0	0	0	1	0	0	0	5202	942	33	3	2416	3	EPHB1	3	134960009	Missense_Mutation	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	7520008	134960009	63062421	18	7869											
SLC25A4	291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	186066080	186066080	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagctctcaacttcgccttcAaggacaagtacaagcagctc	7	13	2	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001151	exon2	c.A274G	p.K92E	GCCTTCAAGGACA		71	15	0.21	157	0	0				39	8	0.21				G	186066080	A	G	186066080	3	3	108	1	0	0	0	0	1	0	0	0	14558	131	5	4	280	4	SLC25A4	4	186066080	Missense_Mutation	SNP	A	TCGA-X3-A8G4-01A-11D-A435-10		186066080	5088196	19	7870											
SLC6A18	348932	mdanderson.org	37	chr5	1246014	1246014	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acccgggctgggcgcgcgccGcctgtgtgctgctgtccttg	16	15	0	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_182632	exon12	c.G1708T	p.A570S	CGCGCCGCCTGTG		28	3	0.11	33	0	0				0	0					T	1246014	G	T	1246014	3	4	108	1	0	0	0	0	1	0	0	0	14735	1087	38	1	1754	1	SLC6A18	5	1246014	Missense_Mutation	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10		1246014	179669246	20	7871											
PCDHB14	56122	mdanderson.org	37	chr5	140604725	140604725	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgaggcgctggtgcgcgtgCtggtgctggacgccaacgac	18	12	0	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_018934	exon1	c.C1648G	p.L550V	CGCGTGCTGGTGC		37	5	0.14	44	1	0.0227272727				1	0	0				G	140604725	C	G	140604725	3	3	108	1	0	0	0	0	1	0	0	0	11585	796	28	5	1650	5	PCDHB14	5	140604725	Missense_Mutation	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10	139358711	140604725	40310535	21	7872											
SAP30L	79685	mdanderson.org	37	chr5	153826274	153826274	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcatcgaggacggcgagcGctgcgtccggcccgcgggca	16	16	1	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_024632	exon1	c.G110A	p.R37H	GCGAGCGCTGCGT		17	2	0.12	17	0	0				10	0	0				A	153826274	G	A	153826274	3	1	108	1	0	0	0	0	1	0	0	0	13887	1087	38	1	112	1	SAP30L	5	153826274	Missense_Mutation	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	13221549	153826274	27088986	22	7873											
TULP4	56995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	158873228	158873228	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctgctcaccgtcagcttcAcctcgggagacatcagctta	8	15	5	1	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_020245	exon5	c.A787G	p.T263A	AGCTTCACCTCGG		104	10	0.1	128	0	0				3	0	0				G	158873228	A	G	158873228	3	3	108	1	0	0	0	0	1	0	0	0	16837	159	6	4	805	4	TULP4	6	158873228	Missense_Mutation	SNP	A	TCGA-X3-A8G4-01A-11D-A435-10		158873228	12241839	23	7874											
KCTD7	154881	mdanderson.org	37	chr7	66094066	66094066	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agagggatggtggtagtcacGgggcgggagccagacagccg	20	8	1	2	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001167961	exon1	c.G15T	p.T5T	AGTCACGGGGCGG		51	3	0.06	51	0	0				0	0					T	66094066	G	T	66094066	2	4	108	1	0	0	0	0	0	0	0	1	8157	1103	39	1		1	KCTD7	7	66094066	Silent	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10		66094066	93044597	24	7875											
PDK4	5166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	95225507	95225507	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agctgcttcatggacagcggGgacgggctgtagcgcgagaa	17	9	1	1	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_002612	exon1	c.C99T	p.S33S	CAGCGGGGACGGG		165	20	0.12	175	0	0				2	0	0				A	95225507	G	A	95225507	2	1	108	1	0	0	0	0	0	0	0	1	11724	1219	43	3		3	PDK4	7	95225507	Silent	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	29131441	95225507	63913156	25	7876											
AP4M1	9179	broad.mit.edu	37	chr7	99699564	99699564	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taccggaagctgacgggactGccaggagacgagtccccggt	15	12	0	2	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	AP4M1	NM_004722	exon2	c.G120A	p.L40L	GGGACTGCCAGGA		259	6	0.02	288	0	0		39		42	0	0				A	99699564	G	A	99699564	2	1	108	1	0	0	0	0	0	0	0	1	749	1306	46	2		2	AP4M1	7	99699564	Silent	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	4474057	99699564	59439099	26	7877											
ZAN	7455	broad.mit.edu	37	chr7	100331551	100331552	+	RNA	INS	-	-	T													ttcctttttgtttctttctcINStttttttttctcttctctct					novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	ZAN	.	.	.	.	CTTTCTCTTTTTT		9	3	0.33	16	0	0		658		0	0					T	100331552	-	T	100331551	6	5	108	0	1	1	1	0	0	0	0	0	17572	928	32	0		0	ZAN	7	100331551	RNA	INS	-	TCGA-X3-A8G4-01A-11D-A435-10	631987	100331551	58807112	27	7878											
TRPV5	56302	mdanderson.org	37	chr7	142606735	142606735	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcagcgaggcagcttccGctccagcatcactgtggtgg	14	13	1	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	TRPV5,NS,carcinoma,+1,1	TRPV5	NM_019841	exon14	c.C1816A	p.R606R	GCTTCCGCTCCAG		24	3	0.13	32	0	0		1	1	0	0					T	142606735	G	T	142606735	2	4	108	1	0	0	0	0	0	0	0	1	16659	1086	38	1		1	TRPV5	7	142606735	Silent	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	42275184	142606735	16531928	28	7879											
REPIN1	29803	broad.mit.edu	37	chr7	150069590	150069590	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaagacgcacctggtggcGcactcgcgcgtgcactccgg	14	14	0	2	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	REPIN1	NM_001099695	exon3	c.G1431T	p.A477A	GGTGGCGCACTCG		6	2	0.33	16	0	0		74		32	0	0				T	150069590	G	T	150069590	2	4	108	1	0	0	0	0	0	0	0	1	13278	1074	38	1		1	REPIN1	7	150069590	Silent	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	7462855	150069590	9069073	29	7880											
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	10468935	10468935	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gtggggcctggctggcgtgtCccctcctgcgggctcccacc	15	17	0	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_178857	exon4	c.G2673T	p.G891G	GCGTGTCCCCTCC		27	12	0.44	33	0	0				0	0					A	10468935	C	A	10468935	2	1	108	1	0	0	0	0	0	0	0	1	13584	842	30	3		3	RP1L1	8	10468935	Silent	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10		10468935	135895087	30	7881											
TNFRSF10B	8795	mdanderson.org	37	chr8	22880439	22880439	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcccaacttcctcatgagCggctcccaggagtcaaaggg	12	13	2	1	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_003842	exon9	c.G1068A	p.P356P	CATGAGCGGCTCC		40	3	0.08	51	0	0				74	0	0				T	22880439	C	T	22880439	2	4	108	1	0	0	0	0	0	0	0	1	16340	755	27	1		1	TNFRSF10B	8	22880439	Silent	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10	12411504	22880439	123483583	31	7882											
ATAD2	29028	bcgsc.ca;mdanderson.org	37	chr8	124383532	124383532	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctctcattcgctgtctacGcatcttcttcatgtcatcca	4	14	7	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	ATAD2,NS,carcinoma,+2,2	ATAD2	NM_014109	exon5	c.C583T	p.R195C	GTCTACGCATCTT		276	22	0.08	264	3	0.0113636364		160	2	17	2	0.12				A	124383532	G	A	124383532	3	1	108	1	0	0	0	0	1	0	0	0	1070	1087	38	1	3685	1	ATAD2	8	124383532	Missense_Mutation	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	101503093	124383532	21980490	32	7883											
BAI1	575	mdanderson.org	37	chr8	143623718	143623718	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acattgaccagatgccgcagAcccgcctcatccacctcagc	7	18	2	3	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001702	exon27	c.A4123C	p.T1375P	CCGCAGACCCGCC		35	14	0.4	62	19	0.3064516129				8	4	0.5				C	143623718	A	C	143623718	3	2	108	1	0	0	0	0	1	0	0	0	1296	275	10	4	4229	4	BAI1	8	143623718	Missense_Mutation	SNP	A	TCGA-X3-A8G4-01A-11D-A435-10	19240186	143623718	2740304	33	7884											
GSN	2934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	124094758	124094758	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gccaatcgggatcggcggacGcccatcaccgtggtgaagca	14	13	1	1	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_000177	exon17	c.G2226C	p.T742T	GCGGACGCCCATC		103	19	0.18	107	0	0				980	153	0.16				C	124094758	G	C	124094758	2	2	108	1	0	0	0	0	0	0	0	1	6865	1074	38	5		5	GSN	9	124094758	Silent	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10		124094758	17118673	34	7885											
OR1Q1	0	broad.mit.edu	37	chr9	125376711	125376713	+	RNA	DEL	TAG	TAG	-													tgaaataataataataataaTagtagtagtagtaataatag					novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	TAG	TAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	OR1Q1	.	.	.	.	TAATAATAGTAGT		6	2	0.33	5	0	0		46		0	0					-	125376713	TAG	-	125376711	6	5	108	0	1	1	0	1	0	0	0	0	11018	1421	49	0		0	OR1Q1	9	125376711	RNA	DEL	TAG	TCGA-X3-A8G4-01A-11D-A435-10	1281953	125376711	15836720	35	7886											
OR1B1	347169	hgsc.bcm.edu	37	chr9	125391778	125391778	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaacccaaggagcaaaaaaaCcggagagtgtgaagcattag	12	7	0	2	rs77073101	bycluster	TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001004450	exon1	c.G37T	p.V13F	AAAAAACCGGAGA		72	6	0.08	74	0	0				0	0					A	125391778	C	A	125391778	3	1	108	1	0	0	0	0	1	0	0	0	10998	507	18	3	922	3	OR1B1	9	125391778	Missense_Mutation	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10	15067	125391778	15821653	36	7887											
UCK1	83549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	134404415	134404415	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtccctccctcggcgcacGtcccggagaactgcagcggc	13	17	0	1	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001261451	exon5	c.C534T	p.D178D	GCGCACGTCCCGG		67	9	0.13	93	0	0				61	12	0.2				A	134404415	G	A	134404415	2	1	108	1	0	0	0	0	0	0	0	1	16982	1136	40	1		1	UCK1	9	134404415	Silent	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	9012637	134404415	6809016	37	7888											
BRD3	8019	mdanderson.org	37	chr9	136915676	136915676	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgaaagggggtcgctggGgagacagaggacacggccgc	18	10	1	3	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_007371	exon5	c.C534A	p.S178S	CGCTGGGGAGACA		21	3	0.14	23	0	0				22	0	0				T	136915676	G	T	136915676	2	4	108	1	0	0	0	0	0	0	0	1	1505	1219	43	3		3	BRD3	9	136915676	Silent	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	2511261	136915676	4297755	38	7889											
LDB3	11155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	88476312	88476312	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgcggagcctgccagccGtccaccctgggtgacagatg	13	16	0	2	rs146265188	bycluster;byfrequency;by1000genomes	TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001171610	exon10	c.G1475A	p.R492H	CCAGCCGTCCACC		124	24	0.19	170	0	0	0.002			0	0					A	88476312	G	A	88476312	3	1	108	1	0	0	0	0	1	0	0	0	8735	1145	40	1	1830	1	LDB3	10	88476312	Missense_Mutation	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10		88476312	47058435	39	7890											
COL17A1	1308	mdanderson.org	37	chr10	105793940	105793940	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgctcatggaagagctgtAggagctgccccgcctgacag	14	11	1	2	rs143582088		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_000494	exon52	c.T3919C	p.Y1307H	AGCTGTAGGAGCT		47	3	0.06	57	0	0	0			11	0	0				G	105793940	A	G	105793940	3	3	108	1	0	0	0	0	1	0	0	0	3697	420	15	4	594	4	COL17A1	10	105793940	Missense_Mutation	SNP	A	TCGA-X3-A8G4-01A-11D-A435-10	17317628	105793940	29740807	40	7891											
ADAM12	8038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	127789652	127789652	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actccctacctgacaagctgCgcattgtcatgggatttgcg	10	12	1	1	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	ADAM12_ENST00000368679,NS,carcinoma,0,9	ADAM12_ENST00000368679	NM_021641	exon9	c.G909A	p.A303A	AAGCTGCGCATTG		76	10	0.13	115	0	0		0	9	1	0	0				T	127789652	C	T	127789652	2	4	108	1	0	0	0	0	0	0	0	1	235	755	27	1		1	ADAM12	10	127789652	Silent	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10	21995712	127789652	7745095	41	7892											
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	129911726	129911726	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caggacaggtggagtgtgcaTtaccagagactttcttttgg	13	7	1	1	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_002417	exon8	c.A1621G	p.M541V	TGTGCATTACCAG		69	31	0.45	86	0	0				2	1	0.5				C	129911726	T	C	129911726	3	2	108	1	0	0	0	0	1	0	0	0	9645	1493	52	4	8181	4	MKI67	10	129911726	Missense_Mutation	SNP	T	TCGA-X3-A8G4-01A-11D-A435-10	2122074	129911726	5623021	42	7893											
OR6A2	8590	mdanderson.org	37	chr11	6816715	6816715	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atcttgggaatagtgacagtGacataccagatctccagaaa	9	8	2	4	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_003696	exon1	c.C225A	p.V75V	GACAGTGACATAC		69	4	0.06	74	0	0				0	0					T	6816715	G	T	6816715	2	4	108	1	0	0	0	0	0	0	0	1	11232	1277	45	3		3	OR6A2	11	6816715	Silent	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10		6816715	128189801	43	7894											
TNKS1BP1	85456	broad.mit.edu	37	chr11	57088152	57088152	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggcaggcagggcccggggTttgggcttgacagggggttt	20	7	0	1	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	TNKS1BP1	NM_033396	exon3	c.A129C	p.K43N	CCGGGGTTTGGGC		27	5	0.19	33	7	0.2121212121		148		12	1	0.08				G	57088152	T	G	57088152	3	3	108	1	0	0	0	0	1	0	0	0	16379	1722	60	4	5096	4	TNKS1BP1	11	57088152	Missense_Mutation	SNP	T	TCGA-X3-A8G4-01A-11D-A435-10	50271437	57088152	77918364	44	7895											
RTN4RL2	349667	mdanderson.org	37	chr11	57243890	57243890	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccctcgctcgagttcctgCggctcaacgctaacccctgg	10	17	1	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_178570	exon3	c.C769T	p.R257W	TTCCTGCGGCTCA		18	2	0.11	17	0	0				2	0	0				T	57243890	C	T	57243890	3	4	108	1	0	0	0	0	1	0	0	0	13783	759	27	1	779	1	RTN4RL2	11	57243890	Missense_Mutation	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10	155738	57243890	77762626	45	7896											
ADRBK1	156	broad.mit.edu	37	chr11	67051341	67051341	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagtaccctcccccgctgaTccccccacgaggggaggtga	12	17	0	2	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	ADRBK1	NM_001619	exon17	c.T1412C	p.I471T	CGCTGATCCCCCC		61	6	0.1	91	2	0.021978022		51		108	0	0				C	67051341	T	C	67051341	3	2	108	1	0	0	0	0	1	0	0	0	342	1435	50	4	1478	4	ADRBK1	11	67051341	Missense_Mutation	SNP	T	TCGA-X3-A8G4-01A-11D-A435-10	9807451	67051341	67955175	46	7897											
FOLR1	2348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	71906977	71906977	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgggagctgcctgccaacCtttccatttctacttcccca	7	15	1	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_016729	exon4	c.C530A	p.P177H	GCCAACCTTTCCA		85	14	0.16	121	0	0				45	15	0.33				A	71906977	C	A	71906977	3	1	108	1	0	0	0	0	1	0	0	0	6013	681	24	3	544	3	FOLR1	11	71906977	Missense_Mutation	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10	4855636	71906977	63099539	47	7898											
RSF1	51773	broad.mit.edu	37	chr11	77378419	77378421	+	In_Frame_Del	DEL	TCC	TCC	-													gggatggtttgccttcctctTcctcctcctcctcatctgct					novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	TCC	TCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	RSF1	NM_016578	exon16	c.3867_3869del	p.1289_1290del	TCCTCTTCCTCCT		144	7	0.05	192	0	0		105		33	0	0				-	77378421	TCC	-	77378419	7	5	108	1	0	1	0	1	0	0	0	0	13750	1783	62	0	460	0	RSF1	11	77378419	In_Frame_Del	DEL	TCC	TCGA-X3-A8G4-01A-11D-A435-10	5471442	77378419	57628097	48	7899											
PIWIL4	143689	mdanderson.org	37	chr11	94337214	94337214	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaatatgttgatcctgatGttcagctggtaagtacagga	11	6	1	2	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_152431	exon13	c.G1630T	p.V544F	CCTGATGTTCAGC		49	3	0.06	89	0	0				0	0					T	94337214	G	T	94337214	3	4	108	1	0	0	0	0	1	0	0	0	12007	1377	48	3	1680	3	PIWIL4	11	94337214	Missense_Mutation	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	16958795	94337214	40669302	49	7900											
ARHGAP32	9743	mdanderson.org	37	chr11	128839438	128839438	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttcttggtgtgccctgtgCtcaggaagactgcagcccat	12	12	2	1	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001142685	exon22	c.G5628A	p.E1876E	CCTGTGCTCAGGA		42	3	0.07	52	0	0				2	0	0				T	128839438	C	T	128839438	2	4	108	1	0	0	0	0	0	0	0	1	878	796	28	2		2	ARHGAP32	11	128839438	Silent	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10	34502224	128839438	6167078	50	7901											
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr11	133789875	133789875	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtggacggcgtagactttcGagaaaagctgactgcagccg	14	9	0	3	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	IGSF9B_ENST00000321016,NS,carcinoma,+1,2	IGSF9B_ENST00000321016	NM_014987	exon18	c.C3745T	p.R1249X	ACTTTCGAGAAAA		53	9	0.17	88	0	0		1	2	1	0	0				A	133789875	G	A	133789875	4	1	108	1	0	0	0	0	0	1	0	0	7649	1066	37	1	312	1	IGSF9B	11	133789875	Nonsense_Mutation	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	4950437	133789875	1216641	51	7902											
PIK3C2G	5288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	18544127	18544127	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatagaagtaatcttgaagaGccactaaaggagtgtataaa	9	4	1	3	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_004570	exon14	c.G1944T	p.E648D	TGAAGAGCCACTA		113	6	0.05	53	0	0				0	0					T	18544127	G	T	18544127	3	4	108	1	0	0	0	0	1	0	0	0	11958	962	34	2	1994	2	PIK3C2G	12	18544127	Missense_Mutation	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10		18544127	115307768	52	7903											
PLCZ1	89869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	18872383	18872383	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accttacatatccccaaaggTcacttggtcccaataattga	5	12	1	1	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_033123	exon5	c.A551G	p.D184G	CAAAGGTCACTTG		419	60	0.14	186	0	0				0	0					C	18872383	T	C	18872383	3	2	108	1	0	0	0	0	1	0	0	0	12091	1667	58	4	1319	4	PLCZ1	12	18872383	Missense_Mutation	SNP	T	TCGA-X3-A8G4-01A-11D-A435-10	328256	18872383	114979512	53	7904											
ABCC9	10060	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	22012586	22012586	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	attctctgcctctgtcccccActcaggttgatgccctagag	8	15	3	2	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_005691	exon20	c.T2439A	p.S813R	TCCCCCACTCAGG		336	23	0.07	141	0	0				0	0					T	22012586	A	T	22012586	3	4	108	1	0	0	0	0	1	0	0	0	59	156	6	5	2428	5	ABCC9	12	22012586	Missense_Mutation	SNP	A	TCGA-X3-A8G4-01A-11D-A435-10	3140203	22012586	111839309	54	7905											
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr12	40713816	40713816	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acagtgaaagtggaaggttgTccaaaacaccctaagggcat	11	8	0	1	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_198578	exon34	c.T4854A	p.C1618X	AGGTTGTCCAAAA		376	75	0.2	305	0	0				1	0	0				A	40713816	T	A	40713816	4	1	108	1	0	0	0	0	0	1	0	0	9077	1673	58	5	4988	5	LRRK2	12	40713816	Nonsense_Mutation	SNP	T	TCGA-X3-A8G4-01A-11D-A435-10	18701230	40713816	93138079	55	7906											
ITGA7	3679	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr12	56088587	56088587	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtccagggcccggacccctGagtagtgcagtgagtcagga	16	11	1	2	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001144996	exon15	c.C2183A	p.S728X	ACCCCTGAGTAGT		111	7	0.06	93	0	0				31	0	0				T	56088587	G	T	56088587	4	4	108	1	0	0	0	0	0	1	0	0	7924	1294	45	3	1286	3	ITGA7	12	56088587	Nonsense_Mutation	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	15374771	56088587	77763308	56	7907											
DDX54	79039	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	113623183	113623183	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcctcggcgcttccggagcCctttcttcttcctccactgg	9	18	2	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_024072	exon1	c.G74T	p.G25V	CGGAGCCCTTTCT		42	6	0.14	56	0	0				25	2	0.08				A	113623183	C	A	113623183	3	1	108	1	0	0	0	0	1	0	0	0	4395	623	22	3	2654	3	DDX54	12	113623183	Missense_Mutation	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10	57534596	113623183	20228712	57	7908											
EP400	57634	broad.mit.edu	37	chr12	132446460	132446460	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagaagaggaggaggaggaGgaagaggaggaagaaaaatc	19	1	0	4	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	EP400,NS,malignant_melanoma,0,1	EP400	NM_015409	exon2	c.G1296A	p.E432E	GGAGGAGGAAGAG		62	3	0.05	56	0	0		370	1	5	0	0				A	132446460	G	A	132446460	2	1	108	1	0	0	0	0	0	0	0	1	5177	991	35	3		3	EP400	12	132446460	Silent	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	18823277	132446460	1405435	58	7909											
FRY	10129	hgsc.bcm.edu	37	chr13	32735280	32735280	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aattttgtcttctaattctaGgggtgagagaaagccaaaaa	9	5	3	2	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_023037	exon17	c.1785-1G>T	.	ATTCTAGGGGTGA		67	4	0.06	77	0	0				0	0					T	32735280	G	T	32735280	5	4	108	1	0	0	0	0	0	0	1	0	6097	1014	35	3	1850	3	FRY	13	32735280	Splice_Site	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10		32735280	82434598	59	7910											
IRF9	10379	mdanderson.org	37	chr14	24634116	24634116	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccaggcccgcatctgctgCccagcaacgagtgcgtggag	15	14	1	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_006084	exon7	c.C943T	p.P315S	CTGCTGCCCAGCA		30	3	0.1	43	0	0				288	0	0				T	24634116	C	T	24634116	3	4	108	1	0	0	0	0	1	0	0	0	7880	739	26	2	965	2	IRF9	14	24634116	Missense_Mutation	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10		24634116	82715424	60	7911											
MAP3K9	4293	mdanderson.org	37	chr14	71275530	71275530	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcgccgccgggctggcagCggctggagaaggcgctgcgc	18	15	0	1	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_033141	exon1	c.G359A	p.R120H	TGGCAGCGGCTGG		38	3	0.08	30	0	0				5	0	0				T	71275530	C	T	71275530	3	4	108	1	0	0	0	0	1	0	0	0	9306	768	27	1	3049	1	MAP3K9	14	71275530	Missense_Mutation	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10	46641414	71275530	36074010	61	7912											
PAPLN	89932	mdanderson.org	37	chr14	73727426	73727426	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtctgcctaggtacgggtgCtgccctgacagggtatctgt	14	10	2	1	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_173462	exon16	c.C1914T	p.C638C	CGGGTGCTGCCCT		42	3	0.07	33	0	0				6	0	0				T	73727426	C	T	73727426	2	4	108	1	0	0	0	0	0	0	0	1	11474	805	28	2		2	PAPLN	14	73727426	Silent	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10	2451896	73727426	33622114	62	7913											
MARK3	4140	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr14	103946751	103946751	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcatctggtggaatgacaCgacgaaatacttatgtttgc	10	8	1	1	rs372126503		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	MARK3	NM_001128919	exon14	c.C1510T	p.R504X	ATGACACGACGAA		233	27	0.12	208	1	0.0048076923		86		88	7	0.08				T	103946751	C	T	103946751	4	4	108	1	0	0	0	0	0	1	0	0	9363	528	19	1	1564	1	MARK3	14	103946751	Nonsense_Mutation	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10	30219325	103946751	3402789	63	7914											
CKMT1B	1159	hgsc.bcm.edu	37	chr15	43891085	43891085	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaacgtggtactggaggaGtggacactgctgctacaggc	14	8	0	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_020990	exon9	c.G1072T	p.V358L	GGAGGAGTGGACA		94	4	0.04	99	0	0				15	0	0				T	43891085	G	T	43891085	3	4	108	1	0	0	0	0	1	0	0	0	3473	1029	36	3	1102	3	CKMT1B	15	43891085	Missense_Mutation	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10		43891085	58640307	64	7915											
TELO2	9894	mdanderson.org	37	chr16	1552719	1552719	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggatttgcagggctgcGccagagagccctggtggccg	19	10	0	1	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_016111	exon14	c.G1727A	p.R576H	GGCTGCGCCAGAG		37	3	0.08	44	0	0				50	0	0				A	1552719	G	A	1552719	3	1	108	1	0	0	0	0	1	0	0	0	15815	1087	38	1	1777	1	TELO2	16	1552719	Missense_Mutation	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10		1552719	88802034	65	7916											
NDE1	54820	mdanderson.org	37	chr16	15790697	15790697	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agacggccaagcagcaccagCgtgcctttgggtgataaggg	15	10	0	2	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001143979	exon9	c.C927T	p.S309S	CACCAGCGTGCCT		46	3	0.07	46	0	0				72	0	0				T	15790697	C	T	15790697	2	4	108	1	0	0	0	0	0	0	0	1	10289	767	27	1		1	NDE1	16	15790697	Silent	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10	14237978	15790697	74564056	66	7917											
EEF2K	29904	bcgsc.ca;mdanderson.org	37	chr16	22274454	22274454	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgagaatagtggggacagCggataccccagtgagaagcg	15	8	1	2	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	EEF2K	NM_013302	exon12	c.C1323T	p.S441S	GGACAGCGGATAC		70	5	0.07	97	0	0		142		5	0	0				T	22274454	C	T	22274454	2	4	108	1	0	0	0	0	0	0	0	1	4956	767	27	1		1	EEF2K	16	22274454	Silent	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10	6483757	22274454	68080299	67	7918											
ERN2	10595	mdanderson.org	37	chr16	23703328	23703328	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgctccaaaagaaggggtGggccagcacctggggggcag	17	10	1	1	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	ERN2_ENST00000256797,colon,carcinoma,0,1	ERN2_ENST00000256797	NM_033266	exon19	c.C2476A	p.H826N	AGGGGTGGGCCAG		44	3	0.07	45	0	0		0	1	2	0	0				T	23703328	G	T	23703328	3	4	108	1	0	0	0	0	1	0	0	0	5266	1348	47	3	464	3	ERN2	16	23703328	Missense_Mutation	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	1428874	23703328	66651425	68	7919											
IRX3	79191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	54319129	54319129	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctctagctcgcgtttgcCgtcctcctcgtcctcctctt	7	18	2	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	IRX3,NS,carcinoma,+1,1	IRX3	NM_024336	exon2	c.G664A	p.G222S	GTTTGCCGTCCTC		37	6	0.16	42	0	0		1	1	9	0	0				T	54319129	C	T	54319129	3	4	108	1	0	0	0	0	1	0	0	0	7888	652	23	1	853	1	IRX3	16	54319129	Missense_Mutation	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10	30615801	54319129	36035624	69	7920											
LRRC36	55282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	67416139	67416139	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aagacagttgccattctccaTgaaagtcagaggtaggagag	12	7	2	4	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	LRRC36,scalp,carcinoma,+2,1	LRRC36	NM_018296	exon13	c.T2034A	p.H678Q	TCTCCATGAAAGT		113	31	0.27	130	0	0		2	1	0	0					A	67416139	T	A	67416139	3	1	108	1	0	0	0	0	1	0	0	0	9034	1461	51	5	2112	5	LRRC36	16	67416139	Missense_Mutation	SNP	T	TCGA-X3-A8G4-01A-11D-A435-10	13097010	67416139	22938614	70	7921											
BANP	54971	mdanderson.org	37	chr16	88014644	88014644	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtcactgatttcagttGttttggagaatcatgtagtg	10	6	4	2	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001173540	exon3	c.G91T	p.V31F	TCAGTTGTTTTGG		23	3	0.13	44	0	0				17	0	0				T	88014644	G	T	88014644	3	4	108	1	0	0	0	0	1	0	0	0	1308	1377	48	3	97	3	BANP	16	88014644	Missense_Mutation	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	20598505	88014644	2340109	71	7922											
ZZEF1	23140	mdanderson.org	37	chr17	3916822	3916822	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagtctggcgacaggccaCgcccaccagccattcccaaa	9	18	1	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_015113	exon52	c.G8500A	p.V2834M	AGGCCACGCCCAC		67	4	0.06	83	1	0.0120481928				14	0	0				T	3916822	C	T	3916822	3	4	108	1	0	0	0	0	1	0	0	0	18294	536	19	1	401	1	ZZEF1	17	3916822	Missense_Mutation	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10		3916822	77278388	72	7923											
SPNS3	201305	mdanderson.org	37	chr17	4352590	4352590	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctttgtgactggagccctGgggttctgggcccccaagtt	14	12	1	1	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_182538	exon7	c.G831T	p.L277L	AGCCCTGGGGTTC		33	3	0.09	41	0	0				2	0	0				T	4352590	G	T	4352590	2	4	108	1	0	0	0	0	0	0	0	1	15131	1335	47	3		3	SPNS3	17	4352590	Silent	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	435768	4352590	76842620	73	7924											
NLRP1	22861	mdanderson.org	37	chr17	5462911	5462911	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggactgggccagctctctgcAgctgaagtagaagacatgct	13	10	1	3	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_014922	exon4	c.T1105C	p.C369R	CTCTGCAGCTGAA		52	3	0.06	94	0	0				10	0	0				G	5462911	A	G	5462911	3	3	108	1	0	0	0	0	1	0	0	0	10517	188	7	4	3447	4	NLRP1	17	5462911	Missense_Mutation	SNP	A	TCGA-X3-A8G4-01A-11D-A435-10	1110321	5462911	75732299	74	7925											
MYH13	8735	mdanderson.org	37	chr17	10236459	10236459	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	caaatccggatgccctcgagGaccccgttacagcgcagctg	11	15	0	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_003802	exon19	c.C2106A	p.V702V	CTCGAGGACCCCG		41	3	0.07	52	0	0				0	0					T	10236459	G	T	10236459	2	4	108	1	0	0	0	0	0	0	0	1	10079	1161	41	3		3	MYH13	17	10236459	Silent	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	4773548	10236459	70958751	75	7926											
FLII	2314	broad.mit.edu;mdanderson.org	37	chr17	18150241	18150241	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtacctgcagaggaagacGtagcagtcctgcgtgtagaa	14	8	0	3	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	FLII	NM_002018	exon22	c.C2802T	p.Y934Y	GAAGACGTAGCAG		39	3	0.08	93	0	0		79		180	7	0.04				A	18150241	G	A	18150241	2	1	108	1	0	0	0	0	0	0	0	1	5957	1140	40	1		1	FLII	17	18150241	Silent	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	7913782	18150241	63044969	76	7927											
SLFN12	55106	broad.mit.edu	37	chr17	33749877	33749877	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaatttcagccttgatcacTccccctccagaattgagcag	6	14	3	3	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	SLFN12	NM_018042	exon2	c.A171G	p.G57G	GATCACTCCCCCT		214	5	0.02	148	2	0.0135135135		56		1	0	0				C	33749877	T	C	33749877	2	2	108	1	0	0	0	0	0	0	0	1	14788	1538	54	4		4	SLFN12	17	33749877	Silent	SNP	T	TCGA-X3-A8G4-01A-11D-A435-10	15599636	33749877	47445333	77	7928											
FMNL1	752	ucsc.edu	37	chr17	43323271	43323271	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gagcaggaggtggaacagtgGaaaaaagaagccgctgccca	15	8	0	1	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	FMNL1	NM_005892	exon24	c.G3021A	p.W1007X	ACAGTGGAAAAAA		134	4	0.03	84	1	0.0119047619		78		96	15	0.16	rescued with RNA-seq			A	43323271	G	A	43323271	4	1	108	1	0	0	0	0	0	1	0	0	5983	1183	41	3	3115	3	FMNL1	17	43323271	Nonsense_Mutation	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	9573394	43323271	37871939	78	7929											
SAMD14	201191	broad.mit.edu	37	chr17	48195666	48195666	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaactgctgtccagtctggcCgtctctggcacagccaagtc	10	14	2	0	rs145637965	alternate_allele	TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	SAMD14	NM_001257359	exon3	c.G69A	p.T23T	TCTGGCCGTCTCT		63	4	0.06	49	0	0		36		6	0	0				T	48195666	C	T	48195666	2	4	108	1	0	0	0	0	0	0	0	1	13870	639	23	1		1	SAMD14	17	48195666	Silent	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10	4872395	48195666	32999544	79	7930											
SMURF2	64750	broad.mit.edu;ucsc.edu	37	chr17	62543750	62543750	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgaagccctgcagaggcactCgagaggatcctgtcacaaac	11	12	1	3	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	SMURF2	NM_022739	exon17	c.G2039A	p.R680Q	GGCACTCGAGAGG		97	4	0.04	89	1	0.0112359551		63		66	7	0.11				T	62543750	C	T	62543750	3	4	108	1	0	0	0	0	1	0	0	0	14873	884	31	1	219	1	SMURF2	17	62543750	Missense_Mutation	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10	14348084	62543750	18651460	80	7931											
OSBPL1A	114876	mdanderson.org	37	chr18	21912990	21912990	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccggtaagctgcacaatGcaagggtgtatttcctaact	11	10	0	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_080597	exon7	c.C541A	p.H181N	CACAATGCAAGGG		124	5	0.04	126	0	0				3	0	0				T	21912990	G	T	21912990	3	4	108	1	0	0	0	0	1	0	0	0	11323	1319	46	2	2399	2	OSBPL1A	18	21912990	Missense_Mutation	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10		21912990	56164258	81	7932											
DIRAS1	148252	mdanderson.org	37	chr19	2717287	2717287	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccgtcgatgttgaggctcAtgttccggcgcgtctccagc	13	13	2	1	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_145173	exon2	c.T518C	p.M173T	AGGCTCATGTTCC		23	3	0.13	33	0	0				10	0	0				G	2717287	A	G	2717287	3	3	108	1	0	0	0	0	1	0	0	0	4558	217	8	4	82	4	DIRAS1	19	2717287	Missense_Mutation	SNP	A	TCGA-X3-A8G4-01A-11D-A435-10		2717287	56411696	82	7933											
SIRT6	51548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	4179130	4179130	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgagcgcacatggagcccGtccacgttctggctgaccag	12	15	1	2	rs200245532		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	SIRT6,NS,carcinoma,-2,1	SIRT6	NM_016539	exon3	c.C348T	p.D116D	GAGCCCGTCCACG		34	8	0.24	49	0	0		-2	1	53	5	0.09				A	4179130	G	A	4179130	2	1	108	1	0	0	0	0	0	0	0	1	14396	1136	40	1		1	SIRT6	19	4179130	Silent	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	1461843	4179130	54949853	83	7934											
TMED1	11018	mdanderson.org	37	chr19	10943839	10943839	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tcgaaggcccgcagtagcgtGagcatctggatgctgcgctc	14	12	1	1	rs142246182		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_006858	exon4	c.C516A	p.L172L	TAGCGTGAGCATC		48	3	0.06	71	0	0	0			91	0	0				T	10943839	G	T	10943839	2	4	108	1	0	0	0	0	0	0	0	1	16061	1277	45	3		3	TMED1	19	10943839	Silent	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	6764709	10943839	48185144	84	7935											
DOCK6	57572	mdanderson.org	37	chr19	11323902	11323902	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtacagcgaggcgctggCgtgcgtgcggatggtgctga	19	9	0	1	rs140032702	bycluster;by1000genomes	TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_020812	exon35	c.G4441A	p.A1481T	CGCTGGCGTGCGT		39	3	0.08	47	0	0	0			57	0	0				T	11323902	C	T	11323902	3	4	108	1	0	0	0	0	1	0	0	0	4718	768	27	1	1758	1	DOCK6	19	11323902	Missense_Mutation	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10	380063	11323902	47805081	85	7936											
DOCK6	57572	mdanderson.org	37	chr19	11361651	11361651	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctggggccgcccgctctaGcagagagggcagcaatgagt	15	11	2	2	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_020812	exon6	c.C619A	p.L207I	GCTCTAGCAGAGA		37	3	0.08	75	0	0				17	0	0				T	11361651	G	T	11361651	3	4	108	1	0	0	0	0	1	0	0	0	4718	962	34	2	5696	2	DOCK6	19	11361651	Missense_Mutation	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	37749	11361651	47767332	86	7937											
SLC27A1	376497	mdanderson.org	37	chr19	17597498	17597498	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcctggcgctggtggatgcCgggaccggcgagtgctggac	19	12	0	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_198580	exon2	c.C294T	p.A98A	GGATGCCGGGACC		23	3	0.13	30	0	0				7	0	0				T	17597498	C	T	17597498	2	4	108	1	0	0	0	0	0	0	0	1	14579	639	23	1		1	SLC27A1	19	17597498	Silent	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10	6235847	17597498	41531485	87	7938											
KIAA0355	9710	broad.mit.edu;bcgsc.ca	37	chr19	34818343	34818346	+	Frame_Shift_Del	DEL	AGAA	AGAA	-													caggcgacatctagactaagAgaaagaggctgtgatggttg					novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	AGAA	AGAA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	KIAA0355	NM_014686	exon4	c.723_726del	p.241_242del	ACTAAGAGAAAGA		47	9	0.19	80	0	0		105		6	0	0				-	34818346	AGAA	-	34818343	7	5	108	1	0	1	0	1	0	0	0	0	8211	301	11	0	733	0	KIAA0355	19	34818343	Frame_Shift_Del	DEL	AGAA	TCGA-X3-A8G4-01A-11D-A435-10	17220845	34818343	24310640	88	7939											
BCL3	602	mdanderson.org	37	chr19	45261637	45261637	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctcaagaactgccacaaCgacacgccgctcatggtggc	10	15	2	1	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_005178	exon7	c.C1026T	p.N342N	CCACAACGACACG		21	3	0.14	16	0	0				60	3	0.05				T	45261637	C	T	45261637	2	4	108	1	0	0	0	0	0	0	0	1	1373	535	19	1		1	BCL3	19	45261637	Silent	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10	10443294	45261637	13867346	89	7940											
PNMAL2	57469	broad.mit.edu;mdanderson.org	37	chr19	46998785	46998785	+	Translation_Start_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagataggggtgggctgcaGcgcacggtgtcaatgcaacc	16	10	1	1	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	PNMAL2	.	.	.	.	GCTGCAGCGCACG		73	4	0.05	73	0	0		44		1	0	0				T	46998785	G	T	46998785	1	4	108	1	0	0	0	0	0	0	0	0	12205	986	34	2		2	PNMAL2	19	46998785	Translation_Start_Site	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	1737148	46998785	12130198	90	7941											
PRKD2	25865	broad.mit.edu;mdanderson.org	37	chr19	47214195	47214195	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aggccctggcgcactaggccGaagagcatctccccgcagtg	13	15	1	1	rs143631618		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	PRKD2	NM_016457	exon3	c.C480T	p.F160F	TAGGCCGAAGAGC		39	3	0.08	48	0	0		94		36	6	0.17				A	47214195	G	A	47214195	2	1	108	1	0	0	0	0	0	0	0	1	12570	1049	37	1		1	PRKD2	19	47214195	Silent	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10	215410	47214195	11914788	91	7942											
BLCAP	10904	ucsc.edu	37	chr20	36147563	36147563	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggacgggcagcagccacTggaggcaatacatgatctct	14	10	1	1	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	BLCAP	NM_006698	exon2	c.A14G	p.Q5R	AGCCACTGGAGGC		118	1	0.01	126	0	0		7		65	8	0.12				C	36147563	T	C	36147563	3	2	108	1	0	0	0	0	1	0	0	0	1441	1580	55	4	253	4	BLCAP	20	36147563	Missense_Mutation	SNP	T	TCGA-X3-A8G4-01A-11D-A435-10		36147563	26877957	92	7943											
TIAM1	7074	broad.mit.edu	37	chr21	32508274	32508274	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgctgccaactctggttccTttttccacttgcccagcgag	8	14	1	0	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	TIAM1	NM_003253	exon24	c.A3860G	p.K1287R	GGTTCCTTTTTCC		192	5	0.03	204	0	0		522		37	0	0				C	32508274	T	C	32508274	3	2	108	1	0	0	0	0	1	0	0	0	15949	1609	56	4	939	4	TIAM1	21	32508274	Missense_Mutation	SNP	T	TCGA-X3-A8G4-01A-11D-A435-10		32508274	15621621	93	7944											
GAB4	128954	bcgsc.ca;mdanderson.org	37	chr22	17473065	17473065	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taaaccagcgtttcctccagGcctaaggaaggagtaagaag	11	9	0	1	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	GAB4	NM_001037814	exon2	c.C176A	p.A59D	CTCCAGGCCTAAG		97	5	0.05	114	0	0		95		0	0					T	17473065	G	T	17473065	3	4	108	1	0	0	0	0	1	0	0	0	6185	1217	42	2	1584	2	GAB4	22	17473065	Missense_Mutation	SNP	G	TCGA-X3-A8G4-01A-11D-A435-10		17473065	33831501	94	7945											
ASB9	140462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	15276999	15277000	+	Missense_Mutation	DNP	GG	GG	AT													aaaagctacctggctgatgaGgttcctcagagacagctgat					novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	GG	GG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001168530	exon2	c.C162A	p.NL54KF	TGATGAGGTTCCT		190	25	0.13	155	0	0				6	0	0				AT	15277000	GG	AT	15276999	3	1	108	1	0	0	0	0	1	0	0	0	1029	1000	35	3	774	3	ASB9	23	15276999	Missense_Mutation	DNP	GG	TCGA-X3-A8G4-01A-11D-A435-10		15276999	139993561	95	7946											
IL9R	3581	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	155239804	155239804	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagagggcagcaggagcagCagcagcagcagcagcagcaa	15	11	1	1	rs71382248		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_002186	exon9	c.C1296G	p.S432R	GAGCAGCAGCAGC		112	6	0.05	125	0	0				1	0	0				G	155239804	C	G	155239804	3	3	108	1	0	0	0	0	1	0	0	0	7751	709	25	5	1330	5	IL9R	23	155239804	Missense_Mutation	SNP	C	TCGA-X3-A8G4-01A-11D-A435-10	139962805	155239804	30756	96	7947											
ACOT7	11332	mdanderson.org	37	chr1	6324673	6324673	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtctagggctgaggctccGcgtggccctgtcgcttcgcc	15	14	1	1	rs139667005	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ACOT7	NM_181864	exon9	c.C1127A	p.A376E	GGCTCCGCGTGGC		53	3	0.06	46	0	0		71		1150	0	0				T	6324673	G	T	6324673	3	4	109	1	0	0	0	0	1	0	0	0	155	1087	38	1	19	1	ACOT7	1	6324673	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10		6324673	242925948	1	7948											
MMACHC	25974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	45973168	45973168	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagctgccacctccgaatGctgactgacccagtggacca	10	15	0	3	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	.	NM_015506	exon2	c.G222A	p.M74I	CCGAATGCTGACT		116	20	0.17	115	0	0				32	6	0.19				A	45973168	G	A	45973168	3	1	109	1	0	0	0	0	1	0	0	0	9688	1319	46	2	228	2	MMACHC	1	45973168	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	39648495	45973168	203277453	2	7949											
CTH	1491	broad.mit.edu	37	chr1	70877110	70877110	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cggttcagcatgcaggaaaaAgacgcctcctcacaaggttt	10	11	2	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	CTH	NM_153742	exon1	c.A12G	p.K4K	GGAAAAAGACGCC		207	4	0.02	202	0	0		48		244	0	0				G	70877110	A	G	70877110	2	3	109	1	0	0	0	0	0	0	0	1	4033	69	3	4		4	CTH	1	70877110	Silent	SNP	A	TCGA-XE-A8H1-01A-11D-A435-10	24903942	70877110	178373511	3	7950											
KCNA2	3737	bcgsc.ca;mdanderson.org	37	chr1	111147358	111147358	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgtcctgtgggtgcccaGggagggcagcagcctcgtct	17	11	1	0	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	KCNA2	NM_001204269	exon3	c.C47A	p.P16H	TGCCCAGGGAGGG		123	5	0.04	144	0	0		61		1	0	0				T	111147358	G	T	111147358	3	4	109	1	0	0	0	0	1	0	0	0	8046	1000	35	3	1456	3	KCNA2	1	111147358	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	40270248	111147358	138103263	4	7951											
ITGA10	8515	mdanderson.org	37	chr1	145532485	145532485	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tcactacctccggcggcagcGagatcccagctctttcctga	9	16	2	2	rs151338211	alternate_allele	TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	ITGA10,NS,carcinoma,+1,1	ITGA10	NM_003637	exon9	c.G938T	p.R313L	GGCAGCGAGATCC		57	3	0.05	56	0	0		131	1	0	0					T	145532485	G	T	145532485	3	4	109	1	0	0	0	0	1	0	0	0	7916	1058	37	1	972	1	ITGA10	1	145532485	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	34385127	145532485	103718136	5	7952											
KCNN3	3782	mdanderson.org	37	chr1	154698449	154698449	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	acgtgcttctccgctttggtGagttccagctttcgggccac	11	13	1	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	KCNN3	NM_001204087	exon6	c.C1689A	p.L563L	TTTGGTGAGTTCC		43	3	0.07	50	0	0		141		4	0	0				T	154698449	G	T	154698449	2	4	109	1	0	0	0	0	0	0	0	1	8123	1277	45	3		3	KCNN3	1	154698449	Silent	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	9165964	154698449	94552172	6	7953											
ILDR2	387597	mdanderson.org	37	chr1	166890443	166890443	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agaagccgctgtgcgcccgcGactccgagcgctcgaagcgg	15	15	0	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ILDR2	NM_199351	exon9	c.C1385A	p.S462X	GCCCGCGACTCCG		16	2	0.13	15	0	0		79		4	0	0				T	166890443	G	T	166890443	4	4	109	1	0	0	0	0	0	1	0	0	7753	1059	37	1	542	1	ILDR2	1	166890443	Nonsense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	12191994	166890443	82360178	7	7954											
OR2T3	343173	broad.mit.edu	37	chr1	248637495	248637495	+	Frame_Shift_Del	DEL	T	T	-													aggacatgatggtgtctgccTtttacaccatcttcactcct					novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	OR2T3	NM_001005495	exon1	c.844delT	p.F282fs	TCTGCCTTTTACA		869	7	0.01	813	0	0		79		0	0					-	248637495	T	-	248637495	7	5	109	1	0	1	0	1	0	0	0	0	11070	1609	56	0	846	0	OR2T3	1	248637495	Frame_Shift_Del	DEL	T	TCGA-XE-A8H1-01A-11D-A435-10	81747052	248637495	613126	8	7955											
PUM2	23369	mdanderson.org	37	chr2	20507802	20507802	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgagctgcagttaactgttGaactgttagtgcattagtcc	10	7	0	2	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	PUM2,NS,carcinoma,+1,1	PUM2	NM_015317	exon6	c.C820A	p.Q274K	ACTGTTGAACTGT		44	3	0.07	50	0	0		91	1	84	0	0				T	20507802	G	T	20507802	3	4	109	1	0	0	0	0	1	0	0	0	12877	1299	45	3	2434	3	PUM2	2	20507802	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10		20507802	222691571	9	7956											
NFE2L2	4780	broad.mit.edu	37	chr2	178096691	178096691	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cagtttggcttctggacttgGaaccatggtagtctcaacca	10	10	2	0	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	NFE2L2	NM_006164	exon5	c.C640A	p.P214T	GACTTGGAACCAT		250	6	0.02	255	1	0.0039215686		225		170	0	0				T	178096691	G	T	178096691	3	4	109	1	0	0	0	0	1	0	0	0	10414	1174	41	3	1181	3	NFE2L2	2	178096691	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	157588889	178096691	65102682	10	7957											
SPEG	10290	mdanderson.org	37	chr2	220342106	220342106	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caggatggaggcgtctacacCtgcaccgcccagaacctggc	12	15	1	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	SPEG	NM_005876	exon20	c.C4668T	p.T1556T	CTACACCTGCACC		56	3	0.05	52	0	0		272		7	0	0				T	220342106	C	T	220342106	2	4	109	1	0	0	0	0	0	0	0	1	15091	668	24	3		3	SPEG	2	220342106	Silent	SNP	C	TCGA-XE-A8H1-01A-11D-A435-10	42245415	220342106	22857267	11	7958											
WDFY1	57590	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	224809898	224809898	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgtgatcacgccgtcctccTtggggatgagcagcgcggcc	14	15	1	2	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	.	NM_020830	exon1	c.A104G	p.K35R	TCCTCCTTGGGGA		32	7	0.22	32	0	0				109	28	0.26				C	224809898	T	C	224809898	3	2	109	1	0	0	0	0	1	0	0	0	17327	1609	56	4	1176	4	WDFY1	2	224809898	Missense_Mutation	SNP	T	TCGA-XE-A8H1-01A-11D-A435-10	4467792	224809898	18389475	12	7959											
B3GNT7	93010	mdanderson.org	37	chr2	232263526	232263526	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatgaacaaggagccgtgcTttttccgcgccatgctcgtg	12	12	0	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	B3GNT7	NM_145236	exon2	c.T1096C	p.F366L	CCGTGCTTTTTCC		13	2	0.15	24	0	0		38		294	1	0				C	232263526	T	C	232263526	3	2	109	1	0	0	0	0	1	0	0	0	1260	1609	56	4	1102	4	B3GNT7	2	232263526	Missense_Mutation	SNP	T	TCGA-XE-A8H1-01A-11D-A435-10	7453628	232263526	10935847	13	7960											
ULK4	54986	mdanderson.org	37	chr3	41705146	41705146	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgcgactagcagtttcagaGcatatgctggtactgggtca	12	9	2	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ULK4	NM_017886	exon30	c.C3023A	p.A1008D	TTCAGAGCATATG		55	3	0.05	76	0	0		150		10	0	0				T	41705146	G	T	41705146	3	4	109	1	0	0	0	0	1	0	0	0	17037	971	34	2	836	2	ULK4	3	41705146	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10		41705146	156317284	14	7961											
PTPN23	25930	mdanderson.org	37	chr3	47448239	47448239	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcagaagttcggggagcGggtgagctacagcgaggagg	20	7	0	2	rs148327878	bycluster;alternate_allele	TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	PTPN23	NM_015466	exon9	c.G806T	p.R269L	GGGAGCGGGTGAG		99	4	0.04	117	0	0		85		117	0	0				T	47448239	G	T	47448239	3	4	109	1	0	0	0	0	1	0	0	0	12839	1130	39	1	840	1	PTPN23	3	47448239	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	5743093	47448239	150574191	15	7962											
PVRL3	25945	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	110831212	110831212	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agtcctctacaactgtaactGtgttaggtaggtatgcttga	10	7	1	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	PVRL3	NM_001243286	exon2	c.G496C	p.V166L	GTAACTGTGTTAG		227	34	0.15	213	2	0.0093896714		78		15	5	0.33				C	110831212	G	C	110831212	3	2	109	1	0	0	0	0	1	0	0	0	12892	1377	48	5	502	5	PVRL3	3	110831212	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	63382973	110831212	87191218	16	7963											
NOP14	8602	mdanderson.org	37	chr4	2949327	2949327	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaacgtattccaaaagaaaGccaaacagtttctgcaggaa	7	10	1	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	NOP14	NM_003703	exon10	c.C1425A	p.G475G	AAGAAAGCCAAAC		45	3	0.07	57	0	0		69		140	1	0.01				T	2949327	G	T	2949327	2	4	109	1	0	0	0	0	0	0	0	1	10582	958	34	2		2	NOP14	4	2949327	Silent	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10		2949327	188204949	17	7964											
PCDH7	5099	mdanderson.org	37	chr4	30724751	30724751	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gacagcggtaagaacgccgaGatcgcctactcgctggactc	12	13	0	2	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	PCDH7	NM_002589	exon1	c.G1707T	p.E569D	CGCCGAGATCGCC		55	3	0.05	80	0	0		215		2	0	0				T	30724751	G	T	30724751	3	4	109	1	0	0	0	0	1	0	0	0	11562	933	33	3	1709	3	PCDH7	4	30724751	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	27775424	30724751	160429525	18	7965											
PDGFRA	5156	mdanderson.org	37	chr4	55153609	55153609	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgcagacctttctgcccGtgaagtggatggctcctgag	12	12	1	3	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	PDGFRA	NM_006206	exon19	c.G2575A	p.V859M	CTGCCCGTGAAGT		59	3	0.05	71	0	0		1583		53	0	0				A	55153609	G	A	55153609	3	1	109	1	0	0	0	0	1	0	0	0	11707	1145	40	1	2645	1	PDGFRA	4	55153609	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	24428858	55153609	136000667	19	7966											
TSPAN5	10098	mdanderson.org	37	chr4	99579371	99579371	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggacccttgtagtgcttccCggacatcctctgggttcatg	11	12	2	0	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	TSPAN5	NM_005723	exon1	c.G7A	p.G3R	GCTTCCCGGACAT		51	3	0.06	85	0	0		32		28	0	0				T	99579371	C	T	99579371	3	4	109	1	0	0	0	0	1	0	0	0	16710	652	23	1	831	1	TSPAN5	4	99579371	Missense_Mutation	SNP	C	TCGA-XE-A8H1-01A-11D-A435-10	44425762	99579371	91574905	20	7967											
PCDHB10	56126	mdanderson.org	37	chr5	140573922	140573922	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacggcgactcgggccagaaCgcctggctgtcgtaccagct	14	14	0	1	rs376773467	bycluster	TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	PCDHB10	NM_018930	exon1	c.C1797T	p.N599N	CCAGAACGCCTGG		25	2	0.08	13	0	0		177		0	0					T	140573922	C	T	140573922	2	4	109	1	0	0	0	0	0	0	0	1	11581	535	19	1		1	PCDHB10	5	140573922	Silent	SNP	C	TCGA-XE-A8H1-01A-11D-A435-10		140573922	40341338	21	7968											
ZNF184	7738	mdanderson.org	37	chr6	27435652	27435652	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaaaactggctgatgagaGtagattatgtcccccttgga	11	8	0	4	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ZNF184	NM_007149	exon3	c.C55A	p.L19I	ATGAGAGTAGATT		49	3	0.06	58	0	0		89		13	0	0				T	27435652	G	T	27435652	3	4	109	1	0	0	0	0	1	0	0	0	17808	1029	36	3	2216	3	ZNF184	6	27435652	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10		27435652	143679415	22	7969											
ZBTB9	221504	mdanderson.org	37	chr6	33423522	33423522	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attcaggtggaagaagaagaGgaggaggaggaagatgatga	18	1	1	6	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ZBTB9	NM_152735	exon2	c.G645A	p.E215E	AGAAGAGGAGGAG		50	3	0.06	60	0	0		23		57	0	0				A	33423522	G	A	33423522	2	1	109	1	0	0	0	0	0	0	0	1	17616	991	35	3		3	ZBTB9	6	33423522	Silent	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	5987870	33423522	137691545	23	7970											
DEF6	50619	broad.mit.edu	37	chr6	35287347	35287347	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagctgaaggaggaggaggCtgcccggcagcggcagcgca	20	10	0	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	DEF6	NM_022047	exon8	c.C1262A	p.A421D	AGGAGGCTGCCCG		159	7	0.04	182	6	0.032967033		36		34	2	0.06				A	35287347	C	A	35287347	3	1	109	1	0	0	0	0	1	0	0	0	4409	797	28	2	1292	2	DEF6	6	35287347	Missense_Mutation	SNP	C	TCGA-XE-A8H1-01A-11D-A435-10	1863825	35287347	135827720	24	7971											
RIPPLY2	134701	mdanderson.org	37	chr6	84563870	84563870	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaagctttaccaattcaggCacccagtcaggtgagtgaca	10	10	2	2	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	RIPPLY2	NM_001009994	exon3	c.C229A	p.H77N	TTCAGGCACCCAG		49	3	0.06	61	0	0		17		1	0	0				A	84563870	C	A	84563870	3	1	109	1	0	0	0	0	1	0	0	0	13436	710	25	2	239	2	RIPPLY2	6	84563870	Missense_Mutation	SNP	C	TCGA-XE-A8H1-01A-11D-A435-10	49276523	84563870	86551197	25	7972											
LRP11	84918	mdanderson.org	37	chr6	150164182	150164182	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcagagcttctctgcccggCagtgtccgtcacggtcagct	12	14	4	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	LRP11	NM_032832	exon3	c.G850A	p.A284T	GCCCGGCAGTGTC		55	3	0.05	89	0	0		27		44	0	0				T	150164182	C	T	150164182	3	4	109	1	0	0	0	0	1	0	0	0	8997	710	25	2	672	2	LRP11	6	150164182	Missense_Mutation	SNP	C	TCGA-XE-A8H1-01A-11D-A435-10	65600312	150164182	20950885	26	7973											
UNCX	340260	broad.mit.edu	37	chr7	1275520	1275520	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagaaggagaacacgaaaaAgggcccggggcggccggcgc	18	10	0	2	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	UNCX	NM_001080461	exon3	c.A503G	p.K168R	CGAAAAAGGGCCC		149	5	0.03	167	0	0		17		8	0	0				G	1275520	A	G	1275520	3	3	109	1	0	0	0	0	1	0	0	0	17057	72	3	4	513	4	UNCX	7	1275520	Missense_Mutation	SNP	A	TCGA-XE-A8H1-01A-11D-A435-10		1275520	157863143	27	7974											
ZAN	7455	broad.mit.edu	37	chr7	100349991	100349991	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacagaaaaacccaccatcTccccagaaaaacccaccacc	2	20	1	2	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	ZAN_ENST00000542585,NS,carcinoma,0,5	ZAN	.	.	.	.	ACCATCTCCCCAG		74	9	0.12	95	7	0.0736842105		658	5	0	0					C	100349991	T	C	100349991	1	2	109	0	1	0	0	0	0	0	0	0	17572	1551	54	4		4	ZAN	7	100349991	RNA	SNP	T	TCGA-XE-A8H1-01A-11D-A435-10	99074471	100349991	58788672	28	7975											
ZAN	7455	broad.mit.edu	37	chr7	100350655	100350655	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caccatccccacggaaaaacTtaccatccccacggaaaaac	4	17	0	0	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ZAN	.	.	.	.	AAAAACTTACCAT		83	6	0.07	139	1	0.0071942446		658		3	0	0				C	100350655	T	C	100350655	1	2	109	0	1	0	0	0	0	0	0	0	17572	1609	56	4		4	ZAN	7	100350655	RNA	SNP	T	TCGA-XE-A8H1-01A-11D-A435-10	664	100350655	58788008	29	7976											
MFHAS1	9258	broad.mit.edu	37	chr8	8748487	8748487	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcagtcggtcctcggtcagAcccgcctgcaggcccaagcg	13	16	1	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	MFHAS1	NM_004225	exon1	c.T2082G	p.G694G	GGTCAGACCCGCC		60	14	0.23	57	15	0.2631578947		58		62	6	0.1				C	8748487	A	C	8748487	2	2	109	1	0	0	0	0	0	0	0	1	9570	262	10	4		4	MFHAS1	8	8748487	Silent	SNP	A	TCGA-XE-A8H1-01A-11D-A435-10		8748487	137615535	30	7977											
CPSF1	29894	mdanderson.org	37	chr8	145618734	145618734	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtgctcaggtacaggtagCggttgagcagctccccatcc	13	12	1	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	CPSF1	NM_013291	exon37	c.G4217A	p.R1406H	AGGTAGCGGTTGA		44	3	0.07	69	0	0		92		784	0	0				T	145618734	C	T	145618734	3	4	109	1	0	0	0	0	1	0	0	0	3847	768	27	1	122	1	CPSF1	8	145618734	Missense_Mutation	SNP	C	TCGA-XE-A8H1-01A-11D-A435-10	136870247	145618734	745288	31	7978											
NPR2	4882	mdanderson.org	37	chr9	35792487	35792487	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcgcggaacctgacgctgGcggtggtgctgccagaacac	17	12	0	2	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	NPR2	NM_003995	exon1	c.G82T	p.A28S	ACGCTGGCGGTGG		42	3	0.07	22	0	0		162		6	0	0				T	35792487	G	T	35792487	3	4	109	1	0	0	0	0	1	0	0	0	10642	1203	42	2	84	2	NPR2	9	35792487	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10		35792487	105420944	32	7979											
IPPK	64768	mdanderson.org	37	chr9	95400366	95400366	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccggactcagggtgcctGcccggcccttgtccgagcca	13	18	1	0	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	IPPK	NM_022755	exon9	c.C833A	p.A278E	GTGCCTGCCCGGC		42	3	0.07	50	0	0		34		57	0	0				T	95400366	G	T	95400366	3	4	109	1	0	0	0	0	1	0	0	0	7844	1319	46	2	662	2	IPPK	9	95400366	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	59607879	95400366	45813065	33	7980											
CUL2	8453	mdanderson.org	37	chr10	35300781	35300781	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgccctccttttacctcttGaataagggcattgtgccgaa	8	12	1	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	CUL2	NM_001198778	exon20	c.C2158A	p.Q720K	CCTCTTGAATAAG		59	3	0.05	62	0	0		63		199	0	0				T	35300781	G	T	35300781	3	4	109	1	0	0	0	0	1	0	0	0	4078	1299	45	3	144	3	CUL2	10	35300781	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10		35300781	100233966	34	7981											
ERCC6	2074	mdanderson.org	37	chr10	50708743	50708743	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	taacacctgtctgctggtacCtatgacaacaaacaccaaca	5	13	1	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ERCC6	NM_000124	exon8	c.1527-1G>T	.	TGGTACCTATGAC		49	3	0.06	54	0	0		162		0	0					A	50708743	C	A	50708743	5	1	109	1	0	0	0	0	0	0	1	0	5245	695	24	3	3015	3	ERCC6	10	50708743	Splice_Site	SNP	C	TCGA-XE-A8H1-01A-11D-A435-10	15407962	50708743	84826004	35	7982											
ANXA7	310	mdanderson.org	37	chr10	75138760	75138760	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctctcagcaaagaaggcaGggcggttcagggcacactgc	14	12	2	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ANXA7	NM_004034	exon13	c.C1253A	p.P418H	AAGGCAGGGCGGT		46	3	0.07	70	0	0		50		361	0	0				T	75138760	G	T	75138760	3	4	109	1	0	0	0	0	1	0	0	0	717	1000	35	3	221	3	ANXA7	10	75138760	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	24430017	75138760	60395987	36	7983											
EXOC6	54536	broad.mit.edu	37	chr10	94773973	94773973	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgccagctctgagcctgtGccaggattccagggggatac	13	11	1	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	EXOC6	NM_019053	exon20	c.G2118T	p.V706V	GCCTGTGCCAGGA		364	5	0.01	385	1	0.0025974026		147		32	0	0				T	94773973	G	T	94773973	2	4	109	1	0	0	0	0	0	0	0	1	5335	1306	46	2		2	EXOC6	10	94773973	Silent	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	19635213	94773973	40760774	37	7984											
ZDHHC16	84287	mdanderson.org	37	chr10	99214534	99214534	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgactcacaagagtcttGtctacctctggttcctgtgc	10	11	4	2	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ZDHHC16	NM_198046	exon9	c.G802T	p.V268F	AGTCTTGTCTACC		148	6	0.04	126	0	0		25		423	0	0				T	99214534	G	T	99214534	3	4	109	1	0	0	0	0	1	0	0	0	17663	1377	48	3	828	3	ZDHHC16	10	99214534	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	4440561	99214534	36320213	38	7985											
HPS6	79803	mdanderson.org	37	chr10	103825727	103825727	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagccactgtgtgtgcgtcCggactctggagcccagcggg	15	13	2	0	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	HPS6	NM_024747	exon1	c.C496A	p.R166R	TGCGTCCGGACTC		16	2	0.13	18	0	0		38		31	3	0.1				A	103825727	C	A	103825727	2	1	109	1	0	0	0	0	0	0	0	1	7383	643	23	1		1	HPS6	10	103825727	Silent	SNP	C	TCGA-XE-A8H1-01A-11D-A435-10	4611193	103825727	31709020	39	7986											
PPRC1	23082	mdanderson.org	37	chr10	103892979	103892979	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgagcggcggcgagcagGtgagaggttggctggcggcc	21	9	0	2	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	PPRC1	NM_015062	exon1	c.153+1G>T	.	GAGCAGGTGAGAG		51	3	0.06	44	0	0		151		5	0	0				T	103892979	G	T	103892979	5	4	109	1	0	0	0	0	0	0	1	0	12458	1275	44	3	156	3	PPRC1	10	103892979	Splice_Site	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	67252	103892979	31641768	40	7987											
TH	7054	mdanderson.org	37	chr11	2188684	2188684	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggtggcaatctcctcggCggtgtactccacacggggaa	13	13	1	0	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	TH	NM_199292	exon7	c.G769A	p.A257T	CCTCGGCGGTGTA		54	3	0.06	69	0	0		43		0	0					T	2188684	C	T	2188684	3	4	109	1	0	0	0	0	1	0	0	0	15897	768	27	1	849	1	TH	11	2188684	Missense_Mutation	SNP	C	TCGA-XE-A8H1-01A-11D-A435-10		2188684	132817832	41	7988											
ILK	3611	mdanderson.org	37	chr11	6625505	6625505	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcgccgggacgctgctatgGacgacattttcactcagtgc	13	12	2	0	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ILK	NM_001014794	exon2	c.G4T	p.D2Y	GCTATGGACGACA		36	3	0.08	39	0	0		41		200	0	0				T	6625505	G	T	6625505	3	4	109	1	0	0	0	0	1	0	0	0	7756	1174	41	3	6	3	ILK	11	6625505	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	4436821	6625505	128381011	42	7989											
ABCC8	6833	mdanderson.org	37	chr11	17464383	17464383	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acagcttcagcagcttgatgCcgcggagcatctcgttggtc	12	12	2	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ABCC8	NM_000352	exon10	c.G1514A	p.G505D	TTGATGCCGCGGA		47	3	0.06	55	0	0		170		2	0	0				T	17464383	C	T	17464383	3	4	109	1	0	0	0	0	1	0	0	0	58	739	26	2	3351	2	ABCC8	11	17464383	Missense_Mutation	SNP	C	TCGA-XE-A8H1-01A-11D-A435-10	10838878	17464383	117542133	43	7990											
PCNXL3	399909	mdanderson.org	37	chr11	65386388	65386388	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgttctgaggcccccactgGctggctgcaaggcagagctg	14	12	1	2	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	PCNXL3	NM_032223	exon6	c.G1555A	p.A519T	CCACTGGCTGGCT		24	2	0.08	32	0	0		140		53	0	0				A	65386388	G	A	65386388	3	1	109	1	0	0	0	0	1	0	0	0	11639	1203	42	2	1577	2	PCNXL3	11	65386388	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	47922005	65386388	69620128	44	7991											
SORL1	6653	mdanderson.org	37	chr11	121475015	121475015	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tggactgctcggacgagagcGatgaaaaggcctgcagtggt	16	8	0	2	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	SORL1	NM_003105	exon33	c.G4633T	p.D1545Y	GAGAGCGATGAAA		44	3	0.07	42	0	0		218		37	0	0				T	121475015	G	T	121475015	3	4	109	1	0	0	0	0	1	0	0	0	14987	1058	37	1	4763	1	SORL1	11	121475015	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	56088627	121475015	13531501	45	7992											
EMG1	10436	broad.mit.edu;mdanderson.org	37	chr12	7084421	7084421	+	RNA	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	atccagtatcagatcactttCcagttggatgtatgaaagtt	8	7	2	2	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	.	.	.	.	.	CACTTTCCAGTTG		307	24	0.08	124	1	0.0080645161				2244	199	0.09				G	7084421	C	G	7084421	1	3	109	0	1	0	0	0	0	0	0	0	5118	855	30	5		5	EMG1	12	7084421	RNA	SNP	C	TCGA-XE-A8H1-01A-11D-A435-10		7084421	126767474	46	7993											
MRPS35	60488	broad.mit.edu;mdanderson.org	37	chr12	27863860	27863860	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctccactgccgtctactcGgccactccggtcccgacacc	7	20	2	0	rs145435105	byfrequency	TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	MRPS35	NM_001190864	exon1	c.G84T	p.S28S	CTACTCGGCCACT		95	4	0.04	61	0	0		26		729	0	0				T	27863860	G	T	27863860	2	4	109	1	0	0	0	0	0	0	0	1	9892	1103	39	1		1	MRPS35	12	27863860	Silent	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	20779439	27863860	105988035	47	7994											
HOXC10	3226	broad.mit.edu	37	chr12	54379332	54379332	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aacctgttggcaggccgctgTcctcctgctcctacccacct	8	18	0	0	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	HOXC10	NM_017409	exon1	c.T289C	p.S97P	CCGCTGTCCTCCT		69	4	0.06	72	0	0		42		1	0	0				C	54379332	T	C	54379332	3	2	109	1	0	0	0	0	1	0	0	0	7349	1667	58	4	291	4	HOXC10	12	54379332	Missense_Mutation	SNP	T	TCGA-XE-A8H1-01A-11D-A435-10	26515472	54379332	79472563	48	7995											
RNF10	9921	mdanderson.org	37	chr12	120972700	120972700	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctcctccgcctcttcggGcagcagcaaagggcaacagc	11	16	1	0	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	RNF10	NM_014868	exon1	c.G86A	p.G29D	CTTCGGGCAGCAG		21	2	0.1	24	0	0		75		244	0	0				A	120972700	G	A	120972700	3	1	109	1	0	0	0	0	1	0	0	0	13473	1203	42	2	88	2	RNF10	12	120972700	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	66593368	120972700	12879195	49	7996											
CDK8	1024	mdanderson.org	37	chr13	26956976	26956976	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctaatattttagttatggGtgaaggtcctgagcgaggaa	13	4	0	2	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	CDK8	NM_001260	exon5	c.G482T	p.G161V	TTATGGGTGAAGG		52	3	0.06	55	0	0		61		19	0	0				T	26956976	G	T	26956976	3	4	109	1	0	0	0	0	1	0	0	0	3172	1261	44	3	500	3	CDK8	13	26956976	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10		26956976	88212902	50	7997											
PCK2	5106	mdanderson.org	37	chr14	24567817	24567817	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acccgactggggacacctgtGcttcaggccctgggagatgg	15	12	1	1	rs373177664	bycluster	TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	PCK2	NM_004563	exon4	c.G594T	p.V198V	ACCTGTGCTTCAG		52	3	0.06	57	0	0		66		80	0	0				T	24567817	G	T	24567817	2	4	109	1	0	0	0	0	0	0	0	1	11628	1306	46	2		2	PCK2	14	24567817	Silent	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10		24567817	82781723	51	7998											
TGM1	7051	mdanderson.org	37	chr14	24724426	24724426	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttgctgccgtgggctgctGctgtctctactgccttccgc	12	14	1	0	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	TGM1	NM_000359	exon12	c.C1679T	p.A560V	GCTGCTGCTGTCT		50	3	0.06	76	0	0		73		3	0	0				A	24724426	G	A	24724426	3	1	109	1	0	0	0	0	1	0	0	0	15888	1319	46	2	790	2	TGM1	14	24724426	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	156609	24724426	82625114	52	7999											
ZFP36L1	677	mdanderson.org	37	chr14	69256669	69256669	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagcaaagctaaagctatGctggaggcggggacggtcag	15	10	1	0	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	ZFP36L1,NS,carcinoma,+1,1	ZFP36L1	NM_001244701	exon3	c.C805A	p.H269N	AGCTATGCTGGAG		31	3	0.1	33	0	0		47	1	443	0	0				T	69256669	G	T	69256669	3	4	109	1	0	0	0	0	1	0	0	0	17703	1319	46	2	422	2	ZFP36L1	14	69256669	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	44532243	69256669	38092871	53	8000											
FSIP1	161835	mdanderson.org	37	chr15	40034047	40034047	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatttcatattcttctggaGggatttgagtatgaaacact	9	6	3	2	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	FSIP1	NM_152597	exon6	c.C614A	p.P205H	TCTGGAGGGATTT		47	3	0.06	50	0	0		53		3	0	0				T	40034047	G	T	40034047	3	4	109	1	0	0	0	0	1	0	0	0	6108	1000	35	3	1159	3	FSIP1	15	40034047	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10		40034047	62497345	54	8001											
ITGA11	22801	mdanderson.org	37	chr15	68628046	68628046	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccattacctgctggccccGcatagcctggtggatggtga	12	13	0	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ITGA11	NM_001004439	exon12	c.C1414T	p.R472W	GGCCCCGCATAGC		62	3	0.05	91	0	0		110		22	0	0				A	68628046	G	A	68628046	3	1	109	1	0	0	0	0	1	0	0	0	7917	1086	38	1	2228	1	ITGA11	15	68628046	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	28593999	68628046	33903346	55	8002											
ARIH1	25820	broad.mit.edu	37	chr15	72767235	72767235	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcggcggcggcggcggCggtggtggtggcgggccggg	28	10	0	0	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ARIH1	NM_005744	exon1	c.C255T	p.G85G	CGGCGGCGGTGGT		61	6	0.1	74	1	0.0135135135		42		1	0	0				T	72767235	C	T	72767235	2	4	109	1	0	0	0	0	0	0	0	1	920	755	27	1		1	ARIH1	15	72767235	Silent	SNP	C	TCGA-XE-A8H1-01A-11D-A435-10	4139189	72767235	29764157	56	8003											
PML	5371	mdanderson.org	37	chr15	74327860	74327860	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggcccctattcggacttgGtctccccatgtggtccaagc	11	15	1	0	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	PML	NM_033239	exon8	c.G2058A	p.W686X	GACTTGGTCTCCC		34	4	0.12	36	0	0		169		117	1	0.01				A	74327860	G	A	74327860	4	1	109	1	0	0	0	0	0	1	0	0	12182	1270	44	3	2222	3	PML	15	74327860	Nonsense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	1560625	74327860	28203532	57	8004											
PIGQ	9091	mdanderson.org	37	chr16	626214	626214	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggctccacgggagaagccGcatcgggcatctggccgacg	15	14	1	1	rs371210440		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	PIGQ	NM_148920	exon4	c.G902A	p.R301H	GAAGCCGCATCGG		40	3	0.08	50	0	0		43		72	0	0				A	626214	G	A	626214	3	1	109	1	0	0	0	0	1	0	0	0	11943	1087	38	1	912	1	PIGQ	16	626214	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10		626214	89728539	58	8005											
NTHL1	4913	ucsc.edu;bcgsc.ca	37	chr16	2096364	2096364	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggctgtggcttttcctcGcttctgcaaaaagcaccacg	11	13	1	0	rs375615004	alternate_allele	TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	NTHL1	NM_002528	exon2	c.C143A	p.A48E	TTCCTCGCTTCTG		42	4	0.1	64	0	0		24		156	0	0				T	2096364	G	T	2096364	3	4	109	1	0	0	0	0	1	0	0	0	10745	1087	38	1	815	1	NTHL1	16	2096364	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	1470150	2096364	88258389	59	8006											
CREBBP	1387	mdanderson.org	37	chr16	3778522	3778522	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catgttggggttgtgtcctgGgttcatgatgttcaaggcct	14	7	2	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	CREBBP	NM_004380	exon31	c.C6526A	p.P2176T	GTCCTGGGTTCAT		47	3	0.06	65	0	0		546		222	0	0				T	3778522	G	T	3778522	3	4	109	1	0	0	0	0	1	0	0	0	3884	1232	43	3	806	3	CREBBP	16	3778522	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	1682158	3778522	86576231	60	8007											
KIFC3	3801	mdanderson.org	37	chr16	57803627	57803627	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcaaggtcagcaagttGgtccggacgcctatggggac	16	10	1	0	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	KIFC3	NM_005550	exon9	c.C1098A	p.T366T	CAAGTTGGTCCGG		47	3	0.06	51	0	0		55		51	0	0				T	57803627	G	T	57803627	2	4	109	1	0	0	0	0	0	0	0	1	8355	1335	47	3		3	KIFC3	16	57803627	Silent	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	54025105	57803627	32551126	61	8008											
TCF25	22980	broad.mit.edu	37	chr16	89940142	89940142	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagcccctcgggcccggcGccttgcatttcgatctccgt	12	16	1	0	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	TCF25	NM_014972	exon1	c.G67T	p.A23S	CCCGGCGCCTTGC		71	6	0.08	72	1	0.0138888889		61		150	2	0.01				T	89940142	G	T	89940142	3	4	109	1	0	0	0	0	1	0	0	0	15752	1087	38	1	69	1	TCF25	16	89940142	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	32136515	89940142	414611	62	8009											
TMEM132E	124842	mdanderson.org	37	chr17	32964437	32964437	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acgcaagagtgtgctcgccaCgacccctgtgggcctgcggg	15	14	0	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	TMEM132E	NM_207313	exon10	c.C2141T	p.T714M	TCGCCACGACCCC		48	3	0.06	65	0	0		122		0	0					T	32964437	C	T	32964437	3	4	109	1	0	0	0	0	1	0	0	0	16107	536	19	1	2179	1	TMEM132E	17	32964437	Missense_Mutation	SNP	C	TCGA-XE-A8H1-01A-11D-A435-10		32964437	48230773	63	8010											
KRT26	353288	broad.mit.edu	37	chr17	38925171	38925171	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gttgcaataaatgtcaatttCtttttctaaaaatattttta	3	4	3	0	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	KRT26	NM_181539	exon6	c.G1147A	p.E383K	CAATTTCTTTTTC		95	15	0.16	111	8	0.0720720721		49		0	0					T	38925171	C	T	38925171	3	4	109	1	0	0	0	0	1	0	0	0	8505	922	32	3	271	3	KRT26	17	38925171	Missense_Mutation	SNP	C	TCGA-XE-A8H1-01A-11D-A435-10	5960734	38925171	42270039	64	8011											
BRCA1	672	hgsc.bcm.edu;bcgsc.ca	37	chr17	41234509	41234509	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtagctgttagaaggctgGctcccatgctgttctaacac	12	10	1	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	BRCA1,NS,carcinoma,0,1	BRCA1	NM_007300	exon12	c.C4269A	p.S1423R	AGGCTGGCTCCCA		115	6	0.05	112	0	0		0	1	82	0	0				T	41234509	G	T	41234509	3	4	109	1	0	0	0	0	1	0	0	0	1500	1194	42	2	1440	2	BRCA1	17	41234509	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	2309338	41234509	39960701	65	8012											
TLK2	11011	broad.mit.edu	37	chr17	60637441	60637441	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gctagagaaatacaaggaacGattaaatagatgtgtgacaa	10	4	0	3	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	TLK2_ENST00000346027,NS,carcinoma,0,31	TLK2	NM_006852	exon10	c.G785A	p.R262Q	AGGAACGATTAAA		457	7	0.02	500	0	0		223	31	43	0	0				A	60637441	G	A	60637441	3	1	109	1	0	0	0	0	1	0	0	0	16003	1058	37	1	819	1	TLK2	17	60637441	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	19402932	60637441	20557769	66	8013											
SMCHD1	23347	mdanderson.org	37	chr18	2724961	2724961	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtaattcgaggtgttacaGccaagggccctgtaaactct	11	9	1	0	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	SMCHD1	NM_015295	exon21	c.G2668T	p.A890S	GTTACAGCCAAGG		67	4	0.06	87	0	0		88		26	0	0				T	2724961	G	T	2724961	3	4	109	1	0	0	0	0	1	0	0	0	14841	971	34	2	2750	2	SMCHD1	18	2724961	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10		2724961	75352287	67	8014											
LRG1	116844	mdanderson.org	37	chr19	4538737	4538737	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttagaggcgccctggaggaGgttggctggcaggtgggtca	19	8	1	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	LRG1	NM_052972	exon2	c.C259A	p.L87I	GGAGGAGGTTGGC		52	3	0.06	59	0	0		25		6	0	0				T	4538737	G	T	4538737	3	4	109	1	0	0	0	0	1	0	0	0	8986	1000	35	3	788	3	LRG1	19	4538737	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10		4538737	54590246	68	8015											
KHSRP	8570	mdanderson.org	37	chr19	6417053	6417053	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgtgctcgcacctgtctGggggccccattatatgagca	12	13	1	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	KHSRP	NM_003685	exon12	c.C1127A	p.P376Q	CTGTCTGGGGGCC		36	3	0.08	51	0	0		51		1844	1	0				T	6417053	G	T	6417053	3	4	109	1	0	0	0	0	1	0	0	0	8192	1348	47	3	1044	3	KHSRP	19	6417053	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	1878316	6417053	52711930	69	8016											
KRI1	65095	mdanderson.org	37	chr19	10665783	10665783	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tcttctcggcagagtgacttGaagacctgccgctttttcca	9	12	2	4	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	KRI1	NM_023008	exon18	c.C1779G	p.F593L	TGACTTGAAGACC		57	3	0.05	93	0	0		65		181	0	0				C	10665783	G	C	10665783	3	2	109	1	0	0	0	0	1	0	0	0	8486	1281	45	5	358	5	KRI1	19	10665783	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	4248730	10665783	48463200	70	8017											
KANK2	25959	broad.mit.edu	37	chr19	11304551	11304551	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acggggcagcgagctcaggcGggggcggcgctgcactgcca	19	13	1	0	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	KANK2	NM_015493	exon2	c.C205A	p.R69S	TCAGGCGGGGGCG		109	4	0.04	130	0	0		47		59	0	0				T	11304551	G	T	11304551	3	4	109	1	0	0	0	0	1	0	0	0	8020	1116	39	1	2414	1	KANK2	19	11304551	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	638768	11304551	47824432	71	8018											
EPOR	2057	mdanderson.org	37	chr19	11492419	11492419	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gagacgtccacctcgtagcgGatgtgagacgtcatgggtgt	15	9	1	2	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	EPOR	NM_000121	exon4	c.C534A	p.I178I	GTAGCGGATGTGA		47	3	0.06	81	0	0		26		11	0	0				T	11492419	G	T	11492419	2	4	109	1	0	0	0	0	0	0	0	1	5217	1164	41	3		3	EPOR	19	11492419	Silent	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	187868	11492419	47636564	72	8019											
F2RL3	9002	mdanderson.org	37	chr19	17000071	17000071	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcggcacccagacccccaGcgtctacgacgagagcggga	14	15	1	2	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	F2RL3	NM_003950	exon1	c.G71T	p.S24I	CCCCCAGCGTCTA		42	3	0.07	56	0	0		20		2	0	0				T	17000071	G	T	17000071	3	4	109	1	0	0	0	0	1	0	0	0	5374	971	34	2	73	2	F2RL3	19	17000071	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	5507652	17000071	42128912	73	8020											
CILP2	148113	mdanderson.org	37	chr19	19655439	19655439	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcttgtgggaggaggagagCggcttccggcgcgaggggtc	22	8	0	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	CILP2	NM_153221	exon8	c.C2085T	p.S695S	GGAGAGCGGCTTC		16	2	0.13	20	0	0		84		10	0	0				T	19655439	C	T	19655439	2	4	109	1	0	0	0	0	0	0	0	1	3452	767	27	1		1	CILP2	19	19655439	Silent	SNP	C	TCGA-XE-A8H1-01A-11D-A435-10	2655368	19655439	39473544	74	8021											
ZNF492	57615	mdanderson.org	37	chr19	22836775	22836775	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctggagcaaggaaaagaaCcttggaatgtgaagagacat	13	5	1	3	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	ZNF492_ENST00000456783,NS,carcinoma,0,1	ZNF492	NM_020855	exon3	c.C88A	p.P30T	AAAGAACCTTGGA		59	3	0.05	85	0	0		129	1	28	0	0				A	22836775	C	A	22836775	3	1	109	1	0	0	0	0	1	0	0	0	17999	507	18	3	94	3	ZNF492	19	22836775	Missense_Mutation	SNP	C	TCGA-XE-A8H1-01A-11D-A435-10	3181336	22836775	36292208	75	8022											
LTBP4	8425	broad.mit.edu;mdanderson.org	37	chr19	41113429	41113429	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagctctgcccacccttcGgctcaggtgagcccctgcgg	12	18	2	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	LTBP4	.	.	.	.	CCCTTCGGCTCAG		59	3	0.05	66	0	0		101		42	0	0				T	41113429	G	T	41113429	3	4	109	1	0	0	0	0	1	0	0	0	9120	1116	39	1	1682	1	LTBP4	19	41113429	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	18276654	41113429	18015554	76	8023											
DACT3	147906	broad.mit.edu	37	chr19	47151865	47151865	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcgcccctgcacctgctccAcccccagaggccgcggtggc	13	20	0	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	DACT3	NM_145056	exon4	c.T1764G	p.G588G	TGCTCCACCCCCA		94	14	0.15	91	20	0.2197802198		26		10	1	0.1				C	47151865	A	C	47151865	2	2	109	1	0	0	0	0	0	0	0	1	4247	146	6	4		4	DACT3	19	47151865	Silent	SNP	A	TCGA-XE-A8H1-01A-11D-A435-10	6038436	47151865	11977118	77	8024											
GLTSCR1	29998	mdanderson.org	37	chr19	48204805	48204805	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctccctgtcctcctcttcCtcctcctcctctgccgcctc	3	24	2	0	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	GLTSCR1	NM_015711	exon15	c.C3816T	p.S1272S	CTCTTCCTCCTCC		26	2	0.08	43	0	0		79		57	0	0				T	48204805	C	T	48204805	2	4	109	1	0	0	0	0	0	0	0	1	6515	668	24	3		3	GLTSCR1	19	48204805	Silent	SNP	C	TCGA-XE-A8H1-01A-11D-A435-10	1052940	48204805	10924178	78	8025											
SPHK2	56848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	49131956	49131956	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agatttgagccagccctgggCctcgacctgttgctcaactg	11	13	1	2	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	.	NM_020126	exon7	c.C891A	p.G297G	CCTGGGCCTCGAC		22	7	0.32	31	0	0				22	6	0.27				A	49131956	C	A	49131956	2	1	109	1	0	0	0	0	0	0	0	1	15102	726	26	2		2	SPHK2	19	49131956	Silent	SNP	C	TCGA-XE-A8H1-01A-11D-A435-10	927151	49131956	9997027	79	8026											
NR1H2	7376	mdanderson.org	37	chr19	50885775	50885775	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgcacgctgagctctgtGcactcggagcaggtcttcgc	13	14	2	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	NR1H2	NM_007121	exon10	c.G1299T	p.V433V	CTCTGTGCACTCG		54	3	0.06	52	0	0		47		248	0	0				T	50885775	G	T	50885775	2	4	109	1	0	0	0	0	0	0	0	1	10664	1306	46	2		2	NR1H2	19	50885775	Silent	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	1753819	50885775	8243208	80	8027											
POLD1	5424	mdanderson.org	37	chr19	50918754	50918754	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcggacctgctgtgcaaccGcatcgatatctcccagctgg	10	15	1	0	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	POLD1	NM_002691	exon21	c.G2624A	p.R875H	GCAACCGCATCGA		129	5	0.04	177	0	0		174		402	0	0				A	50918754	G	A	50918754	3	1	109	1	0	0	0	0	1	0	0	0	12237	1087	38	1	2702	1	POLD1	19	50918754	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	32979	50918754	8210229	81	8028											
U2AF2	11338	mdanderson.org	37	chr19	56172490	56172490	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caacgccggtgcccgtggtcGggagccagatgaccagacaa	14	13	0	3	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	U2AF2	NM_001012478	exon5	c.G421T	p.G141W	GTGGTCGGGAGCC		36	3	0.08	60	0	0		62		1310	1	0				T	56172490	G	T	56172490	3	4	109	1	0	0	0	0	1	0	0	0	16883	1116	39	1	439	1	U2AF2	19	56172490	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	5253736	56172490	2956493	82	8029											
MRPS26	64949	mdanderson.org	37	chr20	3027059	3027059	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagaggaaggtgcacgagGcccgagccggggttctggcg	19	10	1	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	MRPS26	NM_030811	exon2	c.G253T	p.A85S	CACGAGGCCCGAG		28	3	0.11	33	0	0		7		610	1	0				T	3027059	G	T	3027059	3	4	109	1	0	0	0	0	1	0	0	0	9885	1203	42	2	259	2	MRPS26	20	3027059	Missense_Mutation	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10		3027059	59998461	83	8030											
PXMP4	11264	mdanderson.org	37	chr20	32307918	32307918	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacagccccgttccggaaGcccttaagcacggccaacgc	9	18	0	0	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	PXMP4	NM_183397	exon1	c.C96A	p.G32G	CCGGAAGCCCTTA		68	4	0.06	70	0	0		20		16	0	0				T	32307918	G	T	32307918	2	4	109	1	0	0	0	0	0	0	0	1	12902	958	34	2		2	PXMP4	20	32307918	Silent	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	29280859	32307918	30717602	84	8031											
MOCS3	27304	mdanderson.org	37	chr20	49576174	49576174	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtgctgaaaatcgctgcGggtctgggcccctcttacag	13	11	2	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	MOCS3	NM_014484	exon1	c.G795T	p.A265A	CGCTGCGGGTCTG		47	3	0.06	55	0	0		44		48	0	0				T	49576174	G	T	49576174	2	4	109	1	0	0	0	0	0	0	0	1	9740	1103	39	1		1	MOCS3	20	49576174	Silent	SNP	G	TCGA-XE-A8H1-01A-11D-A435-10	17268256	49576174	13449346	85	8032											
KRTAP10-7	386675	mdanderson.org	37	chr21	46020867	46020867	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgccagcaggcctgctgcAtgcccgtctgctgcaagact	11	16	1	1	rs944419	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	KRTAP10-7	NM_198689	exon2	c.A331T	p.M111L	TGCTGCATGCCCG		70	3	0.04	87	0	0		41		0	0					T	46020867	A	T	46020867	3	4	109	1	0	0	0	0	1	0	0	0	8556	217	8	5	337	5	KRTAP10-7	21	46020867	Missense_Mutation	SNP	A	TCGA-XE-A8H1-01A-11D-A435-10		46020867	2109028	86	8033											
DIP2A	23181	mdanderson.org	37	chr21	47965817	47965817	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttccggtcaccacaggaggAgcacccatctttgacaggcc	11	14	2	1	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	DIP2A	NM_206890	exon20	c.A2337G	p.G779G	AGGAGGAGCACCC		46	3	0.07	56	0	0		332		38	0	0				G	47965817	A	G	47965817	2	3	109	1	0	0	0	0	0	0	0	1	4555	291	11	4		4	DIP2A	21	47965817	Silent	SNP	A	TCGA-XE-A8H1-01A-11D-A435-10	1944950	47965817	164078	87	8034											
TAS1R3	83756	mdanderson.org	37	chr1	1269365	1269365	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggccatgctggtggaggtcGcactgtgcacctggtacctg	15	11	0	0	rs201157733	by1000genomes	TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_152228	exon6	c.G2080A	p.A694T	GAGGTCGCACTGT		17	2	0.12	18	0	0	0.001			3	0	0				A	1269365	G	A	1269365	3	1	110	1	0	0	0	0	1	0	0	0	15620	1087	38	1	2102	1	TAS1R3	1	1269365	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10		1269365	247981256	1	8035											
EIF2B3	8891	broad.mit.edu;mdanderson.org	37	chr1	45341312	45341312	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtttgctgacaatctggGctgacgaatggactggtggt	16	6	1	2	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	EIF2B3	NM_020365	exon9	c.C1031A	p.A344D	ATCTGGGCTGACG		91	5	0.05	89	0	0		43		262	1	0				T	45341312	G	T	45341312	3	4	110	1	0	0	0	0	1	0	0	0	5028	1203	42	2	380	2	EIF2B3	1	45341312	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	44071947	45341312	203909309	2	8036											
PKP1	5317	bcgsc.ca	37	chr1	201291157	201291157	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acctctcctaccgcctggacGccgaggtgcccacccgctac	9	20	1	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	PKP1	NM_000299	exon9	c.G1462T	p.A488S	CTGGACGCCGAGG		56	4	0.07	88	1	0.0113636364		127		0	0					T	201291157	G	T	201291157	3	4	110	1	0	0	0	0	1	0	0	0	12031	1087	38	1	1496	1	PKP1	1	201291157	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	155949845	201291157	47959464	3	8037											
RNASEH1	246243	broad.mit.edu	37	chr2	3599780	3599780	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actggaggcgccggctccacGctcggcttcatgtgctttgc	13	14	1	0	rs201104222	by1000genomes;alternate_allele	TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	RNASEH1	NM_002936	exon3	c.C363A	p.S121R	CTCCACGCTCGGC		95	3	0.03	79	0	0		27		158	0	0				T	3599780	G	T	3599780	3	4	110	1	0	0	0	0	1	0	0	0	13462	1078	38	1	521	1	RNASEH1	2	3599780	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10		3599780	239599593	4	8038											
EPAS1	2034	broad.mit.edu;mdanderson.org	37	chr2	46605204	46605204	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	caccacccccagtgccaccaGcagcagcagcagctgctcca	8	20	0	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	EPAS1	NM_001430	exon10	c.G1421C	p.S474T	CCACCAGCAGCAG		75	4	0.05	63	0	0		83		30	0	0				C	46605204	G	C	46605204	3	2	110	1	0	0	0	0	1	0	0	0	5178	971	34	5	1459	5	EPAS1	2	46605204	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	43005424	46605204	196594169	5	8039											
STAT1	6772	mdanderson.org	37	chr2	191864377	191864377	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctgcaaggttttgcatttGaagtcatattcatcttgtaa	7	6	4	1	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_139266	exon7	c.C516A	p.F172L	GCATTTGAAGTCA		84	4	0.05	98	0	0				648	0	0				T	191864377	G	T	191864377	3	4	110	1	0	0	0	0	1	0	0	0	15319	1281	45	3	1816	3	STAT1	2	191864377	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	145259173	191864377	51334996	6	8040											
CHL1	10752	mdanderson.org	37	chr3	407688	407688	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtatccccaaattgcatatGcttgaattacattgtgaaag	7	8	0	2	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001253388	exon13	c.G1641T	p.M547I	GCATATGCTTGAA		44	3	0.07	67	0	0				0	0					T	407688	G	T	407688	3	4	110	1	0	0	0	0	1	0	0	0	3371	1319	46	2	1691	2	CHL1	3	407688	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10		407688	197614742	7	8041											
IL17RC	84818	mdanderson.org	37	chr3	9974650	9974650	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggcagcggccgccaggggCcgcgcggctctgctcctcta	15	18	2	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_153461	exon19	c.C1749T	p.G583G	CAGGGGCCGCGCG		32	3	0.09	28	0	0				25	0	0				T	9974650	C	T	9974650	2	4	110	1	0	0	0	0	0	0	0	1	7684	726	26	2		2	IL17RC	3	9974650	Silent	SNP	C	TCGA-XE-A8H4-01A-31D-A435-10	9566962	9974650	188047780	8	8042											
FEZF2	55079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	62355878	62355878	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caaaaccctttgccgcaagtGgcgcacgtgaaaggcttctt	10	12	1	1	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_018008	exon5	c.C1260T	p.A420A	GCAAGTGGCGCAC		155	17	0.11	188	0	0				0	0					A	62355878	G	A	62355878	2	1	110	1	0	0	0	0	0	0	0	1	5858	1335	47	3		3	FEZF2	3	62355878	Silent	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	52381228	62355878	135666552	9	8043											
NEK11	79858	mdanderson.org	37	chr3	130947422	130947422	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agtactacgctgatgcatttGattcctattgtgaagagagt	10	6	0	4	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_024800	exon15	c.G1450T	p.D484Y	GCATTTGATTCCT		51	3	0.06	56	0	0				7	0	0				T	130947422	G	T	130947422	3	4	110	1	0	0	0	0	1	0	0	0	10369	1290	45	3	1518	3	NEK11	3	130947422	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	68591544	130947422	67075008	10	8044											
HPS3	84343	broad.mit.edu	37	chr3	148858028	148858028	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagaccttctcgttggctGcacaaataaattagtcttat	8	8	2	1	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	HPS3	NM_032383	exon2	c.G455A	p.C152Y	TTGGCTGCACAAA		159	5	0.03	174	0	0		104		8	0	0				A	148858028	G	A	148858028	3	1	110	1	0	0	0	0	1	0	0	0	7380	1319	46	2	461	2	HPS3	3	148858028	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	17910606	148858028	49164402	11	8045											
PKD2	5311	mdanderson.org	37	chr4	88964595	88964595	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaacgccaacattaacctGttctgtgtggtcaggtgtgt	10	9	2	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_000297	exon5	c.G1305T	p.L435L	TAACCTGTTCTGT		42	3	0.07	65	0	0				14	0	0				T	88964595	G	T	88964595	2	4	110	1	0	0	0	0	0	0	0	1	12013	1364	48	3		3	PKD2	4	88964595	Silent	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10		88964595	102189681	12	8046											
UBE2D3	7323	broad.mit.edu	37	chr4	103730964	103730964	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cttactatcatccccaactgGacctgcagaacattgtgctg	7	13	1	1	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	UBE2D3_ENST00000343106,right_upper_lobe,carcinoma,0,2	UBE2D3	NM_181893	exon2	c.C79A	p.P27T	CAACTGGACCTGC		256	4	0.02	301	0	0		25	2	475	0	0				T	103730964	G	T	103730964	3	4	110	1	0	0	0	0	1	0	0	0	16910	1174	41	3	447	3	UBE2D3	4	103730964	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	14766369	103730964	87423312	13	8047											
PLEKHG4B	153478	bcgsc.ca;mdanderson.org	37	chr5	174144	174144	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acattctccaagcaagctcgGcagaggtcaagagtgcatgg	12	10	2	2	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	PLEKHG4B	NM_052909	exon16	c.G3265A	p.A1089T	AGCTCGGCAGAGG		96	5	0.05	101	0	0		167		1	0	0				A	174144	G	A	174144	3	1	110	1	0	0	0	0	1	0	0	0	12119	1203	42	2	3327	2	PLEKHG4B	5	174144	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10		174144	180741116	14	8048											
PCDHB10	56126	mdanderson.org	37	chr5	140573922	140573922	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacggcgactcgggccagaaCgcctggctgtcgtaccagct	14	14	0	1	rs376773467	bycluster	TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_018930	exon1	c.C1797T	p.N599N	CCAGAACGCCTGG		15	2	0.13	20	0	0				1	0	0				T	140573922	C	T	140573922	2	4	110	1	0	0	0	0	0	0	0	1	11581	535	19	1		1	PCDHB10	5	140573922	Silent	SNP	C	TCGA-XE-A8H4-01A-31D-A435-10	140399778	140573922	40341338	15	8049											
FAM8A1	51439	hgsc.bcm.edu	37	chr6	17602826	17602826	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttttaatttacaggcagaGaatatgttattccatccttg	6	6	0	1	rs74444948	bycluster;byfrequency	TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	FAM8A1,NS,carcinoma,-1,2	FAM8A1	NM_016255	exon2	c.G718T	p.E240X	GGCAGAGAATATG		56	3	0.05	41	2	0.0487804878	0.008	-1	2	16	0	0				T	17602826	G	T	17602826	4	4	110	1	0	0	0	0	0	1	0	0	5679	943	33	3	724	3	FAM8A1	6	17602826	Nonsense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10		17602826	153512241	16	8050											
EHMT2	10919	mdanderson.org	37	chr6	31860678	31860678	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagggggccgcttctcagGgaccgggggctgtgggccga	19	11	2	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_025256	exon5	c.C592A	p.P198T	TCTCAGGGACCGG		45	3	0.07	76	0	0				29	0	0				T	31860678	G	T	31860678	3	4	110	1	0	0	0	0	1	0	0	0	5010	1232	43	3	3136	3	EHMT2	6	31860678	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	14257852	31860678	139254389	17	8051											
MEP1A	4224	mdanderson.org	37	chr6	46766384	46766384	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggggacatcctcttgcagGtgagtacctgtcaatgatgc	12	9	2	2	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_005588	exon4	c.186+1G>T	.	TTGCAGGTGAGTA		24	3	0.13	25	0	0				0	0					T	46766384	G	T	46766384	5	4	110	1	0	0	0	0	0	0	1	0	9524	1275	44	3	201	3	MEP1A	6	46766384	Splice_Site	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	14905706	46766384	124348683	18	8052											
WIPI2	26100	broad.mit.edu	37	chr7	5266833	5266833	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccagaggagcccaccaccTggaccgggtacttcgggaaa	12	15	0	1	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	WIPI2	NM_015610	exon10	c.T871C	p.W291R	ACCACCTGGACCG		79	3	0.04	78	0	0		41		241	0	0				C	5266833	T	C	5266833	3	2	110	1	0	0	0	0	1	0	0	0	17430	1580	55	4	943	4	WIPI2	7	5266833	Missense_Mutation	SNP	T	TCGA-XE-A8H4-01A-31D-A435-10		5266833	153871830	19	8053											
BZW2	28969	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	16725542	16725542	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acccacagcttctcctcttcCttaaagccttttccgaaaca	3	16	2	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	BZW2	NM_014038	exon6	c.C418T	p.L140F	CTCTTCCTTAAAG		55	21	0.38	49	3	0.0612244898		35		79	17	0.22				T	16725542	C	T	16725542	3	4	110	1	0	0	0	0	1	0	0	0	1582	681	24	3	436	3	BZW2	7	16725542	Missense_Mutation	SNP	C	TCGA-XE-A8H4-01A-31D-A435-10	11458709	16725542	142413121	20	8054											
ZAN	7455	broad.mit.edu	37	chr7	100349595	100349595	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cagaaaaacccaccattcccTcagaaaaacccaccatcctc	2	18	1	2	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	ZAN_ENST00000542585,NS,carcinoma,-1,2	ZAN	.	.	.	.	ATTCCCTCAGAAA		160	6	0.04	129	0	0		658	2	8	0	0				A	100349595	T	A	100349595	1	1	110	0	1	0	0	0	0	0	0	0	17572	1551	54	5		5	ZAN	7	100349595	RNA	SNP	T	TCGA-XE-A8H4-01A-31D-A435-10	83624053	100349595	58789068	21	8055											
EZH2	2146	mdanderson.org	37	chr7	148529746	148529746	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cataaaattctgctgtagggGagaccaagaatacattatgg	10	6	1	2	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001203247	exon4	c.C343A	p.P115T	GTAGGGGAGACCA		45	3	0.07	28	0	0				54	0	0				T	148529746	G	T	148529746	3	4	110	1	0	0	0	0	1	0	0	0	5362	1174	41	3	1980	3	EZH2	7	148529746	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	48180151	148529746	10608917	22	8056											
CHPF2	54480	broad.mit.edu	37	chr7	150935559	150935559	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agccctggaggggctggaggTgatggatgttttcctccggt	17	8	0	1	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	CHPF2	NM_019015	exon4	c.T2111G	p.V704G	TGGAGGTGATGGA		99	18	0.18	104	9	0.0865384615		52		47	2	0.04				G	150935559	T	G	150935559	3	3	110	1	0	0	0	0	1	0	0	0	3391	1696	59	4	2125	4	CHPF2	7	150935559	Missense_Mutation	SNP	T	TCGA-XE-A8H4-01A-31D-A435-10	2405813	150935559	8203104	23	8057											
BHLHE22	27319	mdanderson.org	37	chr8	65494205	65494205	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctccaagatcgccacgctGctgctcgccaagaactacat	7	16	1	2	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_152414	exon1	c.G858T	p.L286L	CACGCTGCTGCTC		35	3	0.09	35	0	0				12	0	0				T	65494205	G	T	65494205	2	4	110	1	0	0	0	0	0	0	0	1	1420	1306	46	2		2	BHLHE22	8	65494205	Silent	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10		65494205	80869817	24	8058											
FABP12	0	broad.mit.edu	37	chr8	82437068	82437069	+	RNA	INS	-	-	TAT													atgaagtgcctctctgaaaaINStatcccagccttgcattgaa					rs10627097	bycluster;by1000genomes	TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	FABP12	.	.	.	.	CTGAAAATATCCC		7	5	0.71	6	0	0		20		0	0					TAT	82437069	-	TAT	82437068	6	5	110	0	1	1	1	0	0	0	0	0	5387	116	4	0		0	FABP12	8	82437068	RNA	INS	-	TCGA-XE-A8H4-01A-31D-A435-10	16942863	82437068	63926954	25	8059											
PLEC	5339	mdanderson.org	37	chr8	144993686	144993686	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgagtaggggtctctgtagcCggtgacggccttctcggcag	16	11	2	1	rs375044211		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	PLEC_ENST00000436759,right_upper_lobe,carcinoma,0,3	PLEC_ENST00000436759	NM_201380	exon32	c.G10714A	p.G3572S	TGTAGCCGGTGAC		27	3	0.11	15	0	0		0	3	197	0	0				T	144993686	C	T	144993686	3	4	110	1	0	0	0	0	1	0	0	0	12099	652	23	1	3344	1	PLEC	8	144993686	Missense_Mutation	SNP	C	TCGA-XE-A8H4-01A-31D-A435-10	62556618	144993686	1370336	26	8060											
MPDZ	8777	mdanderson.org	37	chr9	13115250	13115250	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actccacagctacccacctgGctgctttgagatggcctcct	8	16	0	1	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001261406	exon39	c.C5364A	p.S1788R	CACCTGGCTGCTT		28	3	0.11	43	0	0				28	0	0				T	13115250	G	T	13115250	3	4	110	1	0	0	0	0	1	0	0	0	9770	1218	42	2		2	MPDZ	9	13115250	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10		13115250	128098181	27	8061											
GNAQ	2776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	80430592	80430592	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	catagcattcctggattccaGgatcattccataaactcttt	5	11	2	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_002072	exon3	c.C416G	p.P139R	ATTCCAGGATCAT		83	34	0.41	109	0	0				45	31	0.69				C	80430592	G	C	80430592	3	2	110	1	0	0	0	0	1	0	0	0	6550	1000	35	5	683	5	GNAQ	9	80430592	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	67315342	80430592	60782839	28	8062											
ROR2	4920	mdanderson.org	37	chr9	94486405	94486405	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggaagggcggggccttctGcttgggccccacgtagcggg	19	11	1	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_004560	exon9	c.C2371A	p.Q791K	CCTTCTGCTTGGG		34	3	0.09	34	0	0				29	0	0				T	94486405	G	T	94486405	3	4	110	1	0	0	0	0	1	0	0	0	13578	1328	46	2	464	2	ROR2	9	94486405	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	14055813	94486405	46727026	29	8063											
RET	5979	mdanderson.org	37	chr10	43596103	43596103	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aactggatctgcatccaggaGgacaccggcctcctctacct	9	15	2	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_020975	exon2	c.G270T	p.E90D	CCAGGAGGACACC		45	3	0.07	51	0	0				23	0	0				T	43596103	G	T	43596103	3	4	110	1	0	0	0	0	1	0	0	0	13286	991	35	3	276	3	RET	10	43596103	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10		43596103	91938644	30	8064											
SORCS1	114815	mdanderson.org	37	chr10	108469042	108469042	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcaatgtagcctggaaaaGgctgattcctgttggcctct	12	9	2	1	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001206572	exon7	c.C1082A	p.P361H	GGAAAAGGCTGAT		53	3	0.06	66	0	0				0	0					T	108469042	G	T	108469042	3	4	110	1	0	0	0	0	1	0	0	0	14983	1000	35	3	2738	3	SORCS1	10	108469042	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	64872939	108469042	27065705	31	8065											
MUC6	4588	bcgsc.ca	37	chr11	1017280	1017280	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	caaggaggtggagaaagatgGaacgtgagtgggaagtgtgg	20	2	0	3	rs199539548	bycluster	TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	MUC6	NM_005961	exon31	c.C5521A	p.P1841T	AAGATGGAACGTG		200	17	0.09	236	4	0.0169491525		408		0	0					T	1017280	G	T	1017280	3	4	110	1	0	0	0	0	1	0	0	0	10027	1174	41	3	1810	3	MUC6	11	1017280	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10		1017280	133989236	32	8066											
MUC2	4583	hgsc.bcm.edu	37	chr11	1092602	1092619	+	In_Frame_Del	DEL	CCACCACTCCCAGCCCTC	CCACCACTCCCAGCCCTC	-													caccactcccagccctccaaCcaccactcccagccctccaa					rs201595190		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	CCACCACTCCCAGCCCTC	CCACCACTCCCAGCCCTC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	MUC2	NM_002457	exon30	c.4420_4437del	p.1474_1479del	CTCCAACCACCAC		98	0	0	126	0	0		614		0	0					-	1092619	CCACCACTCCCAGCCCTC	-	1092602	7	5	110	1	0	1	0	1	0	0	0	0	10022	507	18	0	4539	0	MUC2	11	1092602	In_Frame_Del	DEL	CCACCACTCCCAGCCCTC	TCGA-XE-A8H4-01A-31D-A435-10	75322	1092602	133913914	33	8067											
LSP1	4046	mdanderson.org	37	chr11	1901421	1901421	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggacgaggagggaggcgGccatgtccccgagcggccga	18	13	0	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001242932	exon3	c.G542A	p.G181D	GAGGCGGCCATGT		43	3	0.07	52	0	0				594	0	0				A	1901421	G	A	1901421	3	1	110	1	0	0	0	0	1	0	0	0	9107	1203	42	2	164	2	LSP1	11	1901421	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	808819	1901421	133105095	34	8068											
TAF6L	10629	mdanderson.org	37	chr11	62545499	62545499	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcccatgcgccccgccaGggagggtgaactctactttc	11	15	1	1	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_006473	exon4	c.G284T	p.R95M	CCGCCAGGGAGGG		43	3	0.07	74	0	0				15	0	0				T	62545499	G	T	62545499	3	4	110	1	0	0	0	0	1	0	0	0	15587	1000	35	3	294	3	TAF6L	11	62545499	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	60644078	62545499	72461017	35	8069											
SNX32	254122	mdanderson.org	37	chr11	65620365	65620365	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcatggacttcaagtcccGccgggtctcctcttttcgaa	9	14	4	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_152760	exon12	c.G1094A	p.R365H	AGTCCCGCCGGGT		52	3	0.06	92	0	0				0	0					A	65620365	G	A	65620365	3	1	110	1	0	0	0	0	1	0	0	0	14955	1087	38	1	1140	1	SNX32	11	65620365	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	3074866	65620365	69386151	36	8070											
BRMS1	25855	mdanderson.org	37	chr11	66108711	66108711	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaatcttgaggctccgctgCagccccccaaggggctccgt	12	16	1	1	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_015399	exon4	c.G324A	p.L108L	CCGCTGCAGCCCC		33	3	0.09	56	0	0				100	0	0				T	66108711	C	T	66108711	2	4	110	1	0	0	0	0	0	0	0	1	1518	697	25	2		2	BRMS1	11	66108711	Silent	SNP	C	TCGA-XE-A8H4-01A-31D-A435-10	488346	66108711	68897805	37	8071											
C11orf54	28970	bcgsc.ca	37	chr11	93492996	93492996	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaaagctcctttggtttGtctaccagtttttgtctcca	7	9	2	1	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	C11orf54	NM_014039	exon7	c.G596T	p.C199F	TGGTTTGTCTACC		45	4	0.09	65	0	0		23		17	0	0				T	93492996	G	T	93492996	3	4	110	1	0	0	0	0	1	0	0	0	1654	1377	48	3	618	3	C11orf54	11	93492996	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	27384285	93492996	41513520	38	8072											
THY1	7070	mdanderson.org	37	chr11	119291054	119291054	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctctggtccactaggcagGccgttaggctggtcaccttc	13	13	2	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	THY1,NS,carcinoma,+1,1	THY1	NM_006288	exon3	c.C80A	p.A27D	AGGCAGGCCGTTA		43	3	0.07	56	0	0		1	1	249	0	0				T	119291054	G	T	119291054	3	4	110	1	0	0	0	0	1	0	0	0	15944	1203	42	2	413	2	THY1	11	119291054	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	25798058	119291054	15715462	39	8073											
WNK1	65125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	994308	994308	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atcgttgtttctagtacagcActgtatccttcagtaacagt	7	9	2	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001184985	exon19	c.A5118G	p.A1706A	TACAGCACTGTAT		188	46	0.24	130	0	0				99	31	0.31				G	994308	A	G	994308	2	3	110	1	0	0	0	0	0	0	0	1	17436	146	6	4		4	WNK1	12	994308	Silent	SNP	A	TCGA-XE-A8H4-01A-31D-A435-10		994308	132857587	40	8074											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	25378562	25378562	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acttacctgtcttgtctttgCtgatgtttcaataaaaggaa	7	7	3	1	rs121913527		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	KRAS_ENST00000256078,colon,carcinoma,+1,137	KRAS_ENST00000256078	NM_004985	exon4	c.G436A	p.A146T	TCTTTGCTGATGT		144	8	0.06	58	0	0		1	137	245	28	0.11				T	25378562	C	T	25378562	3	4	110	1	0	0	0	0	1	0	0	0	8480	797	28	2	262	2	KRAS	12	25378562	Missense_Mutation	SNP	C	TCGA-XE-A8H4-01A-31D-A435-10	24384254	25378562	108473333	41	8075											
SSPN	8082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	26383896	26383896	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttaatttggtctgcggcCttgtgtgcttgttggcctgc	12	9	2	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_005086	exon3	c.C619T	p.L207F	TGCGGCCTTGTGT		131	9	0.07	62	0	0				7	0	0				T	26383896	C	T	26383896	3	4	110	1	0	0	0	0	1	0	0	0	15243	681	24	3	629	3	SSPN	12	26383896	Missense_Mutation	SNP	C	TCGA-XE-A8H4-01A-31D-A435-10	1005334	26383896	107467999	42	8076											
ANKRD33	341405	mdanderson.org	37	chr12	52282494	52282494	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaccccaggctgcaggctGggggccctgtattgggcctg	15	15	0	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_182608	exon2	c.G288T	p.L96L	CAGGCTGGGGGCC		51	3	0.06	53	0	0				0	0					T	52282494	G	T	52282494	2	4	110	1	0	0	0	0	0	0	0	1	656	1335	47	3		3	ANKRD33	12	52282494	Silent	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	25898598	52282494	81569401	43	8077											
APAF1	317	broad.mit.edu	37	chr12	99056499	99056499	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agttccttaggaaaggaaaaAggacttgaaattttatccct	8	6	0	1	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	APAF1	NM_181868	exon7	c.A870G	p.K290K	GGAAAAAGGACTT		190	4	0.02	202	1	0.004950495		111		6	0	0				G	99056499	A	G	99056499	2	3	110	1	0	0	0	0	0	0	0	1	751	69	3	4		4	APAF1	12	99056499	Silent	SNP	A	TCGA-XE-A8H4-01A-31D-A435-10	46774005	99056499	34795396	44	8078											
MYL2	4633	mdanderson.org	37	chr12	111348947	111348947	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtccaagttgccagtcacGtcaggggggaaggcggcgaa	16	9	2	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	MYL2,NS,carcinoma,0,1	MYL2	NM_000432	exon7	c.C435A	p.D145E	AGTCACGTCAGGG		48	3	0.06	65	0	0		0	1	0	0					T	111348947	G	T	111348947	3	4	110	1	0	0	0	0	1	0	0	0	10094	1136	40	1	69	1	MYL2	12	111348947	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	12292448	111348947	22502948	45	8079											
TUBA3C	7278	mdanderson.org	37	chr13	19751292	19751292	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgtggtaggccttctcggcTgagatgaccggggcgtaggt	17	9	1	2	rs147482964	byfrequency	TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_006001	exon4	c.A831G	p.S277S	CTCGGCTGAGATG		115	11	0.1	109	1	0.0091743119	0.006			18	0	0				C	19751292	T	C	19751292	2	2	110	1	0	0	0	0	0	0	0	1	16807	1567	55	4		4	TUBA3C	13	19751292	Silent	SNP	T	TCGA-XE-A8H4-01A-31D-A435-10		19751292	95418586	46	8080											
TPTE2	93492	bcgsc.ca	37	chr13	20056686	20056686	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttggaaagtcgttctaacaTactttagccaccaaaaaaaa	5	9	1	0	rs201542496		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	TPTE2	NM_199254	exon5	c.A121G	p.M41V	CTAACATACTTTA		387	15	0.04	507	1	0.0019723866		225		1	0	0				C	20056686	T	C	20056686	3	2	110	1	0	0	0	0	1	0	0	0	16491	1420	49	4	1515	4	TPTE2	13	20056686	Missense_Mutation	SNP	T	TCGA-XE-A8H4-01A-31D-A435-10	305394	20056686	95113192	47	8081											
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	45618040	45618040	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acttaattgatttcatatagGctgtgcaacaagttattact	6	6	1	1	rs141336758	bycluster;alternate_allele	TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	FANCM,NS,carcinoma,-1,1	FANCM	NM_020937	exon4	c.G760T	p.A254S	ATATAGGCTGTGC		71	10	0.14	74	0	0		-1	1	1	1	1				T	45618040	G	T	45618040	3	4	110	1	0	0	0	0	1	0	0	0	5703	1217	42	2	774	2	FANCM	14	45618040	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10		45618040	61731500	48	8082											
ZBTB1	22890	mdanderson.org	37	chr14	64998614	64998614	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctaaacctgtggagaagtGagagatctgaatttggagag	13	4	2	5	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_014950	exon3	c.G1934T	p.X645L	AGAAGTGAGAGAT		110	5	0.05	92	0	0				3	0	0				T	64998614	G	T	64998614	3	4	110	1	0	0	0	0	1	0	0	0	17580	1285	45	3	2184	3	ZBTB1	14	64998614	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	19380574	64998614	42350926	49	8083											
TLN2	83660	mdanderson.org	37	chr15	62994394	62994394	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctgtgcagcctacttctGgagaggtaagctccagaggc	13	10	1	2	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_015059	exon15	c.G1900T	p.G634X	ACTTCTGGAGAGG		43	3	0.07	50	0	0				17	0	0				T	62994394	G	T	62994394	4	4	110	1	0	0	0	0	0	1	0	0	16007	1349	47	3	1958	3	TLN2	15	62994394	Nonsense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10		62994394	39536998	50	8084											
TMEM8A	58986	mdanderson.org	37	chr16	422283	422283	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggtgcccgcagcggtaagCctggagaaaacagccacgca	13	14	0	1	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_021259	exon13	c.G2020A	p.A674T	GGTAAGCCTGGAG		20	2	0.1	25	0	0				98	0	0				T	422283	C	T	422283	3	4	110	1	0	0	0	0	1	0	0	0	16273	753	26	2	299	2	TMEM8A	16	422283	Missense_Mutation	SNP	C	TCGA-XE-A8H4-01A-31D-A435-10		422283	89932470	51	8085											
PIGQ	9091	mdanderson.org	37	chr16	626176	626176	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgctggacgtggccctGggcctcatgctgctgtcctg	15	13	1	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_148920	exon4	c.G864T	p.L288L	GGCCCTGGGCCTC		36	3	0.08	30	0	0				41	0	0				T	626176	G	T	626176	2	4	110	1	0	0	0	0	0	0	0	1	11943	1335	47	3		3	PIGQ	16	626176	Silent	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	203893	626176	89728577	52	8086											
KIAA0430	9665	mdanderson.org	37	chr16	15692880	15692880	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgctctgtgtgactgggCcctgggcaaacaaggagggc	15	11	1	1	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001184998	exon26	c.G4815A	p.G1605G	ACTGGGCCCTGGG		35	3	0.09	23	0	0				46	0	0				T	15692880	C	T	15692880	2	4	110	1	0	0	0	0	0	0	0	1	8218	753	26	2		2	KIAA0430	16	15692880	Silent	SNP	C	TCGA-XE-A8H4-01A-31D-A435-10	15066704	15692880	74661873	53	8087											
BCL7C	9274	mdanderson.org	37	chr16	30904221	30904221	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actggcgcccctgccccgacGttcccggccacgggatctct	11	19	1	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_004765	exon3	c.C220A	p.R74S	CCCGACGTTCCCG		27	3	0.11	42	0	0				171	0	0				T	30904221	G	T	30904221	3	4	110	1	0	0	0	0	1	0	0	0	1378	1145	40	1	449	1	BCL7C	16	30904221	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	15211341	30904221	59450532	54	8088											
NRN1L	123904	ucsc.edu;bcgsc.ca	37	chr16	67918828	67918828	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatgcgctgctgccgccgcCgctgctgctgccggcaacca	13	17	0	1	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	NRN1L	NM_198443	exon1	c.C22T	p.R8C	CGCCGCCGCTGCT		22	4	0.18	22	0	0		13		29	0	0				T	67918828	C	T	67918828	3	4	110	1	0	0	0	0	1	0	0	0	10706	652	23	1	24	1	NRN1L	16	67918828	Missense_Mutation	SNP	C	TCGA-XE-A8H4-01A-31D-A435-10	37014607	67918828	22435925	55	8089											
TMED6	146456	mdanderson.org	37	chr16	69377514	69377514	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tagtatcgccacatgtgaaaGatattgttctgcaccttttg	8	8	1	2	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_144676	exon4	c.C519A	p.I173I	GTGAAAGATATTG		85	5	0.06	86	0	0				6	0	0				T	69377514	G	T	69377514	2	4	110	1	0	0	0	0	0	0	0	1	16067	932	33	3		3	TMED6	16	69377514	Silent	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	1458686	69377514	20977239	56	8090											
CDYL2	124359	mdanderson.org	37	chr16	80638332	80638332	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagctgaaaagggagtcaaGgcctttggaggagctccaga	15	7	1	2	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_152342	exon7	c.C1474A	p.L492I	AGTCAAGGCCTTT		41	3	0.07	42	0	0				12	0	0				T	80638332	G	T	80638332	3	4	110	1	0	0	0	0	1	0	0	0	3208	1000	35	3	50	3	CDYL2	16	80638332	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	11260818	80638332	9716421	57	8091											
BANP	54971	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	88068971	88068971	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tcgcccaggtgccgcaggggGagcaagtccagatcacgcag	15	13	1	1	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001173542	exon10	c.G1243C	p.E415Q	CAGGGGGAGCAAG		118	11	0.09	125	0	0				43	5	0.12				C	88068971	G	C	88068971	3	2	110	1	0	0	0	0	1	0	0	0	1308	1175	41	5	1295	5	BANP	16	88068971	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	7430639	88068971	2285782	58	8092											
GUCY2D	3000	mdanderson.org	37	chr17	7915838	7915838	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acggaactgcatagtggatgGcagattcgtactcaagatca	11	8	2	2	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_000180	exon10	c.G2027T	p.G676V	TGGATGGCAGATT		30	3	0.1	52	0	0				1	0	0				T	7915838	G	T	7915838	3	4	110	1	0	0	0	0	1	0	0	0	6937	1203	42	2	2061	2	GUCY2D	17	7915838	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10		7915838	73279372	59	8093											
SUPT6H	6830	broad.mit.edu	37	chr17	27010745	27010745	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcagcgcaccatggccatcGaacgggctttacagcagttc	12	13	0	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	SUPT6H	NM_003170	exon17	c.G2140T	p.E714X	GCCATCGAACGGG		153	5	0.03	182	1	0.0054945055		165		70	0	0				T	27010745	G	T	27010745	4	4	110	1	0	0	0	0	0	1	0	0	15455	1059	37	1	2202	1	SUPT6H	17	27010745	Nonsense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	19094907	27010745	54184465	60	8094											
SUPT6H	6830	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr17	27015153	27015153	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgagagccggacccagctGgtcaccatgtgccacatggg	13	14	1	1	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	SUPT6H	NM_003170	exon24	c.G3051T	p.L1017L	CCAGCTGGTCACC		58	4	0.07	85	0	0		165		61	10	0.16				T	27015153	G	T	27015153	2	4	110	1	0	0	0	0	0	0	0	1	15455	1335	47	3		3	SUPT6H	17	27015153	Silent	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	4408	27015153	54180057	61	8095											
PITPNC1	26207	mdanderson.org	37	chr17	65574359	65574359	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagtatgaggacaacaaaGgaagcaatgacaccgtgagt	11	8	0	3	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_012417	exon5	c.G352T	p.G118X	AACAAAGGAAGCA		32	3	0.09	43	0	0				226	0	0				T	65574359	G	T	65574359	4	4	110	1	0	0	0	0	0	1	0	0	11996	1001	35	3	370	3	PITPNC1	17	65574359	Nonsense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	38559206	65574359	15620851	62	8096											
TBCD	6904	bcgsc.ca;mdanderson.org	37	chr17	80869665	80869665	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagctcatgagacaagcaGgtaagtctgaaggcctttgc	12	9	2	2	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	TBCD	NM_005993	exon23	c.G2038T	p.V680L	CAAGCAGGTAAGT		75	5	0.07	71	0	0		94		138	0	0				T	80869665	G	T	80869665	3	4	110	1	0	0	0	0	1	0	0	0	15692	1014	35	3	2128	3	TBCD	17	80869665	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	15295306	80869665	325545	63	8097											
HCN2	610	mdanderson.org	37	chr19	590563	590563	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggcctggatcatccacccGtacagcgacttcaggtaccg	12	14	2	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001194	exon1	c.G618A	p.P206P	CCACCCGTACAGC		32	3	0.09	39	0	0				62	0	0				A	590563	G	A	590563	2	1	110	1	0	0	0	0	0	0	0	1	7037	1132	40	1		1	HCN2	19	590563	Silent	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10		590563	58538420	64	8098											
LONP1	9361	broad.mit.edu;mdanderson.org	37	chr19	5693409	5693409	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccggacaggcctgcccatgGccagggacagcagggccgtg	17	14	0	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	LONP1	NM_004793	exon17	c.C2603T	p.T868I	CCCATGGCCAGGG		41	3	0.07	44	1	0.0227272727		66		427	0	0				A	5693409	G	A	5693409	3	1	110	1	0	0	0	0	1	0	0	0	8936	1203	42	2	284	2	LONP1	19	5693409	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	5102846	5693409	53435574	65	8099											
PNPLA6	10908	mdanderson.org	37	chr19	7619921	7619921	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcacctgcacctgcgctGtccgcgccgcctcttttcgc	12	18	1	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001166111	exon24	c.G2807T	p.C936F	TGCGCTGTCCGCG		15	3	0.2	10	0	0				65	0	0				T	7619921	G	T	7619921	3	4	110	1	0	0	0	0	1	0	0	0	12216	1377	48	3	2897	3	PNPLA6	19	7619921	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	1926512	7619921	51509062	66	8100											
COL5A3	50509	mdanderson.org	37	chr19	10077257	10077257	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagctcgtggcacacgaGgcccgggcgctccgcagtgc	16	15	0	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_015719	exon63	c.C4624A	p.L1542I	ACACGAGGCCCGG		13	2	0.15	24	0	0				16	0	0				T	10077257	G	T	10077257	3	4	110	1	0	0	0	0	1	0	0	0	3721	1000	35	3	633	3	COL5A3	19	10077257	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	2457336	10077257	49051726	67	8101											
COL5A3	50509	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	10096522	10096522	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acccccagcttcctaccttaGgtccagggcgtcctggataa	9	15	0	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	COL5A3	NM_015719	exon31	c.C2402A	p.P801H	ACCTTAGGTCCAG		66	5	0.08	73	0	0		243		1	0	0				T	10096522	G	T	10096522	3	4	110	1	0	0	0	0	1	0	0	0	3721	1000	35	3	2983	3	COL5A3	19	10096522	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	19265	10096522	49032461	68	8102											
CHERP	10523	ucsc.edu	37	chr19	16641681	16641681	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccagcagctcccgggcctGcttgcgctggctgtgaggga	17	13	0	1	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	CHERP	NM_006387	exon6	c.C685T	p.Q229X	GGGCCTGCTTGCG		38	4	0.11	23	0	0		70		170	0	0				A	16641681	G	A	16641681	4	1	110	1	0	0	0	0	0	1	0	0	3358	1328	46	2	2113	2	CHERP	19	16641681	Nonsense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	6545159	16641681	42487302	69	8103											
KIAA1683	80726	mdanderson.org	37	chr19	18368036	18368036	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagctggccgaggggtctGctggtcccaagagcgcctct	16	12	2	2	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001145304	exon4	c.C4058A	p.A1353E	GGGTCTGCTGGTC		48	3	0.06	58	0	0				3	0	0				T	18368036	G	T	18368036	3	4	110	1	0	0	0	0	1	0	0	0	8292	1319	46	2	49	2	KIAA1683	19	18368036	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	1726355	18368036	40760947	70	8104											
TMEM161A	54929	mdanderson.org	37	chr19	19232386	19232386	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcgtcccggtgggtctgggCcagccgcaggcctgggaagg	19	12	1	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_017814	exon8	c.G748A	p.A250T	TCTGGGCCAGCCG		41	3	0.07	52	0	0				51	0	0				T	19232386	C	T	19232386	3	4	110	1	0	0	0	0	1	0	0	0	16135	739	26	2	711	2	TMEM161A	19	19232386	Missense_Mutation	SNP	C	TCGA-XE-A8H4-01A-31D-A435-10	864350	19232386	39896597	71	8105											
WDR62	284403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	36582162	36582162	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctctgacaaaagcatctcaGtgattgacttttactcgggc	9	10	2	3	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_173636	exon17	c.G2095A	p.V699M	ATCTCAGTGATTG		93	10	0.11	97	0	0				145	40	0.28				A	36582162	G	A	36582162	3	1	110	1	0	0	0	0	1	0	0	0	17372	1029	36	3	2161	3	WDR62	19	36582162	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	17349776	36582162	22546821	72	8106											
DMWD	1762	mdanderson.org	37	chr19	46287528	46287528	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actgtgccactcggggagttGcctggttgggaggagatgcc	17	9	0	1	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_004943	exon5	c.C1998T	p.G666G	GGAGTTGCCTGGT		24	3	0.13	30	0	0				48	0	0				A	46287528	G	A	46287528	2	1	110	1	0	0	0	0	0	0	0	1	4621	1306	46	2		2	DMWD	19	46287528	Silent	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	9705366	46287528	12841455	73	8107											
SIGLEC9	27180	mdanderson.org	37	chr19	51630549	51630549	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctacctgaacgtctccctGcagagtgagtgcaccagtat	10	12	2	3	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_014441	exon4	c.G1011A	p.L337L	CTCCCTGCAGAGT		47	3	0.06	38	0	0				31	0	0				A	51630549	G	A	51630549	2	1	110	1	0	0	0	0	0	0	0	1	14369	1306	46	2		2	SIGLEC9	19	51630549	Silent	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	5343021	51630549	7498434	74	8108											
PPP2R1A	5518	mdanderson.org	37	chr19	52723049	52723049	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctgccattgtggagctgGctgaggacgccaagtggcgg	16	11	0	1	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	PPP2R1A,NS,carcinoma,-1,1	PPP2R1A	NM_014225	exon10	c.G1234T	p.A412S	GAGCTGGCTGAGG		42	4	0.1	38	0	0		-1	1	805	0	0				T	52723049	G	T	52723049	3	4	110	1	0	0	0	0	1	0	0	0	12430	1203	42	2	1272	2	PPP2R1A	19	52723049	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	1092500	52723049	6405934	75	8109											
NLRP8	126205	mdanderson.org	37	chr19	56487528	56487528	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgacttgacctttaattGctgtcaggatatgatctctg	10	7	2	3	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_176811	exon8	c.G2735T	p.C912F	TTAATTGCTGTCA		82	5	0.06	73	0	0				0	0					T	56487528	G	T	56487528	3	4	110	1	0	0	0	0	1	0	0	0	10529	1319	46	2	2765	2	NLRP8	19	56487528	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10	3764479	56487528	2641455	76	8110											
ENTPD6	955	mdanderson.org	37	chr20	25187787	25187787	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgcgggtggcgaaggtgGcataccccctggggctgtgt	18	11	0	0	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001247	exon3	c.G130A	p.A44T	AAGGTGGCATACC		42	3	0.07	79	1	0.0126582278				54	0	0				A	25187787	G	A	25187787	3	1	110	1	0	0	0	0	1	0	0	0	5171	1203	42	2	143	2	ENTPD6	20	25187787	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10		25187787	37837733	77	8111											
GAS2L1	10634	mdanderson.org	37	chr22	29704567	29704567	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctgctggccccacgcctcGtgcagtttgagcaggagatt	13	13	0	2	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_152237	exon2	c.G472T	p.V158L	CGCCTCGTGCAGT		24	3	0.13	22	0	0				101	0	0				T	29704567	G	T	29704567	3	4	110	1	0	0	0	0	1	0	0	0	6285	1145	40	1	474	1	GAS2L1	22	29704567	Missense_Mutation	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10		29704567	21599999	78	8112											
WNK3	65267	mdanderson.org	37	chrX	54320996	54320996	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtgttacctgtaacagaGgagcagtgctgctgtggttt	13	7	0	1	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001002838	exon8	c.C1683A	p.S561S	AACAGAGGAGCAG		40	3	0.08	36	0	0				7	0	0				T	54320996	G	T	54320996	2	4	110	1	0	0	0	0	0	0	0	1	17438	987	35	3		3	WNK3	23	54320996	Silent	SNP	G	TCGA-XE-A8H4-01A-31D-A435-10		54320996	100949564	79	8113											
PAK3	5063	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	110385387	110385387	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcagactttgagcatacgaTtcatgtggggtttgatgcag	12	6	2	3	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	PAK3	NM_001128166	exon4	c.T239G	p.I80S	ATACGATTCATGT		72	5	0.07	79	0	0		179		1	0	0				G	110385387	T	G	110385387	3	3	110	1	0	0	0	0	1	0	0	0	11448	1493	52	4	245	4	PAK3	23	110385387	Missense_Mutation	SNP	T	TCGA-XE-A8H4-01A-31D-A435-10	56064391	110385387	44885173	80	8114											
TAS1R1	80835	mdanderson.org	37	chr1	6615594	6615594	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctggctgtctgcaggtgaGgcacagacccgaggtgaccc	14	12	2	3	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_177540	exon1	c.G161T	p.R54M	AGGTGAGGCACAG		32	3	0.09	41	0	0				1	0	0				T	6615594	G	T	6615594	3	4	111	1	0	0	0	0	1	0	0	0	15618	1000	35	3	163	3	TAS1R1	1	6615594	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10		6615594	242635027	1	8115											
FBXO2	26232	mdanderson.org	37	chr1	11710791	11710791	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tccaggtacgcggcggcggcCgccgcctcctcctcctgctg	13	19	0	0	rs61749273	bycluster	TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_012168	exon2	c.G123C	p.A41A	GGCGGCCGCCGCC		9	2	0.22	17	0	0				17	5	0.29				G	11710791	C	G	11710791	2	3	111	1	0	0	0	0	0	0	0	1	5764	639	23	5		5	FBXO2	1	11710791	Silent	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10	5095197	11710791	237539830	2	8116											
MYOM3	127294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	24406587	24406587	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctggaaactgacgtgataGcctgtgacaggcccagcccc	11	14	0	3	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_152372	exon20	c.C2505T	p.G835G	GTGATAGCCTGTG		105	26	0.25	150	0	0				0	0					A	24406587	G	A	24406587	2	1	111	1	0	0	0	0	0	0	0	1	10140	958	34	2		2	MYOM3	1	24406587	Silent	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	12695796	24406587	224844034	3	8117											
SLC9A1	6548	broad.mit.edu	37	chr1	27436115	27436115	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgacccggatgtgggaggTaaatcgggaggtgaaggctg	19	5	0	2	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	SLC9A1	NM_003047	exon3	c.A967C	p.T323P	GGGAGGTAAATCG		103	23	0.22	79	13	0.164556962		68		82	5	0.06				G	27436115	T	G	27436115	3	3	111	1	0	0	0	0	1	0	0	0	14763	1638	57	4	1520	4	SLC9A1	1	27436115	Missense_Mutation	SNP	T	TCGA-XE-A8H5-01A-11D-A435-10	3029528	27436115	221814506	4	8118											
COL24A1	255631	mdanderson.org	37	chr1	86246917	86246917	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acttacagttctacctgttgGgcctattataccttctctgc	6	12	2	0	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_152890	exon52	c.C4324A	p.P1442T	CTGTTGGGCCTAT		40	3	0.08	24	0	0				2	0	0				T	86246917	G	T	86246917	3	4	111	1	0	0	0	0	1	0	0	0	3706	1232	43	3	856	3	COL24A1	1	86246917	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	58810802	86246917	163003704	5	8119											
RORC	6097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	151783858	151783858	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgatgaaaggccagctcCagattgtactgcagctgttc	11	9	0	4	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	RORC,NS,neuroblastoma,-2,1	RORC	NM_005060	exon10	c.G1338T	p.L446L	CAGCTCCAGATTG		108	20	0.19	112	0	0		-2	1	1	0	0				A	151783858	C	A	151783858	2	1	111	1	0	0	0	0	0	0	0	1	13581	581	21	3		3	RORC	1	151783858	Silent	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10	65536941	151783858	97466763	6	8120											
RFWD2	64326	broad.mit.edu	37	chr1	176105674	176105674	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acttagctccttctggatctGttccagttgctgcagattaa	8	10	2	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	RFWD2	NM_022457	exon7	c.C841A	p.Q281K	GGATCTGTTCCAG		215	15	0.07	150	1	0.0066666667		67		112	0	0				T	176105674	G	T	176105674	3	4	111	1	0	0	0	0	1	0	0	0	13311	1386	48	3	1410	3	RFWD2	1	176105674	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	24321816	176105674	73144947	7	8121											
ALK	238	mdanderson.org	37	chr2	29462644	29462644	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagacacgccgtgggaccGcatcatggtgttcttcccgc	11	15	2	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	ALK,right_lower_lobe,carcinoma,+1,1	ALK	NM_004304	exon13	c.C2257A	p.R753R	GGGACCGCATCAT		54	3	0.06	54	0	0		1	1	1	0	0				T	29462644	G	T	29462644	2	4	111	1	0	0	0	0	0	0	0	1	521	1086	38	1		1	ALK	2	29462644	Silent	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10		29462644	213736729	8	8122											
TEKT4	150483	ucsc.edu	37	chr2	95542476	95542476	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	agtgcatggcccatcgtactCgctaccccaccatcctgcag	8	17	0	0	rs1052809	bycluster;byfrequency	TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	TEKT4,NS,carcinoma,0,1	TEKT4	NM_144705	exon6	c.C1270T	p.R424C	CGTACTCGCTACC		27	5	0.19	16	0	0		72	1	2	2	1				T	95542476	C	T	95542476	3	4	111	1	0	0	0	0	1	0	0	0	15813	884	31	1	1292	1	TEKT4	2	95542476	Missense_Mutation	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10	66079832	95542476	147656897	9	8123											
FAM178B	51252	mdanderson.org	37	chr2	97543710	97543710	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcatggtgcggtgcatggCctgggggctctcccggatct	17	11	2	0	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001122646	exon16	c.G1924A	p.A642T	GCATGGCCTGGGG		45	3	0.07	44	0	0				18	0	0				T	97543710	C	T	97543710	3	4	111	1	0	0	0	0	1	0	0	0	5533	739	26	2	123	2	FAM178B	2	97543710	Missense_Mutation	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10	2001234	97543710	145655663	10	8124											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	141459406	141459406	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccttctgacagacccgtttGcatgtgctctgccaaaaagt	8	13	2	2	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	LRP1B,colon,carcinoma,+1,2	LRP1B	NM_018557	exon40	c.C6311T	p.A2104V	CCGTTTGCATGTG		199	46	0.23	204	0	0		1	2	1	0	0				A	141459406	G	A	141459406	3	1	111	1	0	0	0	0	1	0	0	0	8999	1319	46	2	7696	2	LRP1B	2	141459406	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	43915696	141459406	101739967	11	8125											
TTN	7273	bcgsc.ca;mdanderson.org	37	chr2	179605648	179605648	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcccaaaggaagctgactGctcaattcattggctttagc	9	11	2	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	TTN_ENST00000359218,NS,carcinoma,-1,3	TTN	NM_001267550	exon48	c.C12312A	p.S4104R	CTGACTGCTCAAT		70	5	0.07	91	0	0		18412	3	0	0					T	179605648	G	T	179605648	3	4	111	1	0	0	0	0	1	0	0	0	16796	1310	46	2	92477	2	TTN	2	179605648	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	38146242	179605648	63593725	12	8126											
XRCC5	7520	broad.mit.edu	37	chr2	217012963	217012963	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgattgaagccaagaaaaAggatcaagtgactgctcagg	11	7	3	4	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	XRCC5	NM_021141	exon14	c.A1634G	p.K545R	AGAAAAAGGATCA		287	4	0.01	270	0	0		64		3275	1	0				G	217012963	A	G	217012963	3	3	111	1	0	0	0	0	1	0	0	0	17515	72	3	4	1688	4	XRCC5	2	217012963	Missense_Mutation	SNP	A	TCGA-XE-A8H5-01A-11D-A435-10	37407315	217012963	26186410	13	8127											
PER2	8864	mdanderson.org	37	chr2	239171600	239171600	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggggacctactctttttGtggatggccagcatcaaggg	13	8	2	0	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_022817	exon10	c.C1146A	p.H382Q	CTTTTTGTGGATG		50	3	0.06	58	0	0				10	0	0				T	239171600	G	T	239171600	3	4	111	1	0	0	0	0	1	0	0	0	11776	1368	48	3	2677	3	PER2	2	239171600	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	22158637	239171600	4027773	14	8128											
ITPR1	3708	mdanderson.org	37	chr3	4730230	4730230	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttggctcatgaatttttgCagaatttctgcgcaggcaac	11	8	2	2	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001099952	exon31	c.C3727T	p.Q1243X	TTTTTGCAGAATT		50	3	0.06	65	0	0				2	0	0				T	4730230	C	T	4730230	4	4	111	1	0	0	0	0	0	1	0	0	7963	711	25	2	3868	2	ITPR1	3	4730230	Nonsense_Mutation	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10		4730230	193292200	15	8129											
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	4810414	4810414	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccatcctccgcttccttcAgctcctgtgtgaaaaccaca	6	17	1	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001168272	exon45	c.A5900G	p.Q1967R	TCCTTCAGCTCCT		189	43	0.23	267	0	0				15	2	0.13				G	4810414	A	G	4810414	3	3	111	1	0	0	0	0	1	0	0	0	7963	188	7	4	6119	4	ITPR1	3	4810414	Missense_Mutation	SNP	A	TCGA-XE-A8H5-01A-11D-A435-10	80184	4810414	193212016	16	8130											
C3orf36	80111	mdanderson.org	37	chr3	133647172	133647172	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaattagttgccccgctctgCcttgagactgagactttctg	9	11	2	2	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_025041	exon1	c.G476A	p.G159D	GCTCTGCCTTGAG		40	3	0.08	50	0	0				0	0					T	133647172	C	T	133647172	3	4	111	1	0	0	0	0	1	0	0	0	2240	739	26	2	25	2	C3orf36	3	133647172	Missense_Mutation	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10	128836758	133647172	64375258	17	8131											
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4	rs104886003	bycluster	TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	PIK3CA_ENST00000263967,NS,carcinoma,0,1370	PIK3CA_ENST00000263967	NM_006218	exon10	c.G1633A	p.E545K	ATCACTGAGCAGG		315	81	0.26	348	0	0		0	1370	38	13	0.34				A	178936091	G	A	178936091	3	1	111	1	0	0	0	0	1	0	0	0	11960	1291	45	3	1667	3	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	45288919	178936091	19086339	18	8132											
HOPX	84525	mdanderson.org	37	chr4	57522142	57522142	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccacctggtcctctgtggGgccgctcgcggtctccgccg	13	17	2	0	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001145460	exon3	c.C79A	p.P27T	CTGTGGGGCCGCT		42	3	0.07	26	0	0				9	0	0				T	57522142	G	T	57522142	3	4	111	1	0	0	0	0	1	0	0	0	7325	1232	43	3	338	3	HOPX	4	57522142	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10		57522142	133632134	19	8133											
COX18	285521	broad.mit.edu;mdanderson.org	37	chr4	73935349	73935349	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcggccgcagccaccgaccGccgagccggcacagcatttc	12	18	0	0	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	COX18	NM_173827	exon1	c.C18T	p.G6G	CCGACCGCCGAGC		14	4	0.29	15	0	0		20		20	5	0.25				A	73935349	G	A	73935349	2	1	111	1	0	0	0	0	0	0	0	1	3790	1074	38	1		1	COX18	4	73935349	Silent	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	16413207	73935349	117218927	20	8134											
SDHA	6389	hgsc.bcm.edu	37	chr5	256508	256508	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacgaggctgactgtgccacCgtcccgccagccattcgctc	10	17	0	1	rs3211499		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	SDHA,NS,carcinoma,+2,1	SDHA	NM_004168	exon15	c.C1968T	p.T656T	TGCCACCGTCCCG		104	6	0.06	161	1	0.0062111801		2	1	193	2	0.01				T	256508	C	T	256508	2	4	111	1	0	0	0	0	0	0	0	1	14016	639	23	1		1	SDHA	5	256508	Silent	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10		256508	180658752	21	8135											
CTNND2	1501	mdanderson.org	37	chr5	11098816	11098816	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccacagcatctggatcccTtttggtggttcagcacagtc	10	12	2	0	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001332	exon15	c.A2508G	p.K836K	GATCCCTTTTGGT		52	3	0.06	86	0	0				5	0	0				C	11098816	T	C	11098816	2	2	111	1	0	0	0	0	0	0	0	1	4044	1606	56	4		4	CTNND2	5	11098816	Silent	SNP	T	TCGA-XE-A8H5-01A-11D-A435-10	10842308	11098816	169816444	22	8136											
PDZD2	23037	mdanderson.org	37	chr5	32089541	32089541	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caagcctgttcctgagcaagGcatgtggagcaggttccaca	12	11	0	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_178140	exon19	c.G5987T	p.G1996V	AGCAAGGCATGTG		31	3	0.1	55	0	0				3	0	0				T	32089541	G	T	32089541	3	4	111	1	0	0	0	0	1	0	0	0	11747	1203	42	2	6061	2	PDZD2	5	32089541	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	20990725	32089541	148825719	23	8137											
DND1	373863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140052912	140052912	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcaccaggcggatgcctGtctccctgacccacgcctcc	9	20	1	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_194249	exon2	c.C86A	p.T29K	ATGCCTGTCTCCC		46	18	0.39	82	0	0				317	131	0.41				T	140052912	G	T	140052912	3	4	111	1	0	0	0	0	1	0	0	0	4693	1377	48	3	987	3	DND1	5	140052912	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	107963371	140052912	40862348	24	8138											
TCOF1	6949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	149776279	149776279	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaggagaagaaagggaagGggtctcttggctcccaaggg	16	7	2	2	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001135243	exon24	c.G4216T	p.G1406W	GGGAAGGGGTCTC		61	15	0.25	131	0	0				343	168	0.49				T	149776279	G	T	149776279	3	4	111	1	0	0	0	0	1	0	0	0	15767	1232	43	3	4335	3	TCOF1	5	149776279	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	9723367	149776279	31138981	25	8139											
DDX41	51428	mdanderson.org	37	chr5	176938912	176938912	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacccaggcccccgcagaaGgcacagccgcgctctcctgg	12	18	1	2	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_016222	exon17	c.C1749A	p.A583A	GCAGAAGGCACAG		23	2	0.09	50	0	0				281	0	0				T	176938912	G	T	176938912	2	4	111	1	0	0	0	0	0	0	0	1	4384	987	35	3		3	DDX41	5	176938912	Silent	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	27162633	176938912	3976348	26	8140											
DEK	7913	bcgsc.ca	37	chr6	18264096	18264096	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttcctcctcctcctcctcCtcgtcgtcctcgtcctcttc	3	21	1	0	rs147127829	bycluster;byfrequency;by1000genomes	TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	DEK	NM_003472	exon2	c.G123C	p.E41D	CTCCTCCTCGTCG		107	6	0.06	129	2	0.015503876		31		141	2	0.01				G	18264096	C	G	18264096	3	3	111	1	0	0	0	0	1	0	0	0	4452	680	24	5	1044	5	DEK	6	18264096	Missense_Mutation	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10		18264096	152850971	27	8141											
HIST1H3C	8352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	26045834	26045834	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgagctgctgatccggaagCtgccgttccagcgcctggtg	14	14	0	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_003531	exon1	c.C196T	p.L66L	CGGAAGCTGCCGT		100	27	0.27	118	0	0				135	37	0.27				T	26045834	C	T	26045834	2	4	111	1	0	0	0	0	0	0	0	1	7197	796	28	2		2	HIST1H3C	6	26045834	Silent	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10	7781738	26045834	145069233	28	8142											
PI16	221476	mdanderson.org	37	chr6	36926939	36926939	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagatgggacgaggagctgGccgccttcgccaaggcctac	15	12	0	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_153370	exon2	c.G190A	p.A64T	GAGCTGGCCGCCT		36	3	0.08	63	0	0				5	0	0				A	36926939	G	A	36926939	3	1	111	1	0	0	0	0	1	0	0	0	11916	1203	42	2	196	2	PI16	6	36926939	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	10881105	36926939	134188128	29	8143											
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	75904580	75904580	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	caccgttattctgtaacccaCaattggatcaactggttttg	7	10	2	0	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_004370	exon3	c.G157T	p.V53L	AACCCACAATTGG		114	27	0.24	92	0	0				0	0					A	75904580	C	A	75904580	3	1	111	1	0	0	0	0	1	0	0	0	3692	478	17	3	9290	3	COL12A1	6	75904580	Missense_Mutation	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10	38977641	75904580	95210487	30	8144											
FRMD1	79981	mdanderson.org	37	chr6	168479734	168479734	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaacgtgtcagggtttgtcCgggcggggtctatgcccctc	16	11	2	0	rs148792644	bycluster;by1000genomes	TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_024919	exon1	c.G41A	p.R14Q	TTTGTCCGGGCGG		45	3	0.07	56	0	0	0			0	0					T	168479734	C	T	168479734	3	4	111	1	0	0	0	0	1	0	0	0	6083	652	23	1	1665	1	FRMD1	6	168479734	Missense_Mutation	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10	92575154	168479734	2635333	31	8145											
C7orf29	113763	mdanderson.org	37	chr7	150027939	150027939	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggggagaagccagggggAgcctctgcagagcagcagcc	19	10	1	2	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_138434	exon1	c.A446G	p.E149G	AGGGGGAGCCTCT		23	2	0.09	46	1	0.0217391304				11	0	0				G	150027939	A	G	150027939	3	3	111	1	0	0	0	0	1	0	0	0	2401	304	11	4	448	4	C7orf29	7	150027939	Missense_Mutation	SNP	A	TCGA-XE-A8H5-01A-11D-A435-10		150027939	9110724	32	8146											
AGAP3	116988	mdanderson.org	37	chr7	150813895	150813895	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcagactcgtttgtgaacaGccaggagtggacgctgagcc	14	11	0	3	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_031946	exon2	c.G347T	p.S116I	TGAACAGCCAGGA		45	3	0.07	74	0	0				20	0	0				T	150813895	G	T	150813895	3	4	111	1	0	0	0	0	1	0	0	0	368	971	34	2	353	2	AGAP3	7	150813895	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	785956	150813895	8324768	33	8147											
SNTG1	54212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	51503445	51503445	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atttatcattgcagattaaaAaaatcaacagaaactttcct	3	7	2	2	rs370352160	alternate_allele	TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_018967	exon13	c.A817G	p.K273E	ATTAAAAAAATCA		844	129	0.15	662	1	0.001510574				0	0					G	51503445	A	G	51503445	3	3	111	1	0	0	0	0	1	0	0	0	14927	15	1	4	859	4	SNTG1	8	51503445	Missense_Mutation	SNP	A	TCGA-XE-A8H5-01A-11D-A435-10		51503445	94860577	34	8148											
TATDN1	83940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr8	125520903	125520903	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ttggtaattttgtttgttctGacagttcaaactgtttttca	7	5	3	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_032026	exon7	c.C416G	p.S139X	TGTTCTGACAGTT		259	46	0.18	177	0	0				248	14	0.06				C	125520903	G	C	125520903	4	2	111	1	0	0	0	0	0	1	0	0	15647	1294	45	5	501	5	TATDN1	8	125520903	Nonsense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	74017458	125520903	20843119	35	8149											
KCNK9	51305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	140630919	140630919	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaccaggttgaggaaggccCcgatgaccgtcagccccacc	12	16	1	2	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_016601	exon2	c.G707A	p.G236E	AAGGCCCCGATGA		104	14	0.13	85	0	0				0	0					T	140630919	C	T	140630919	3	4	111	1	0	0	0	0	1	0	0	0	8115	623	22	3	421	3	KCNK9	8	140630919	Missense_Mutation	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10	15110016	140630919	5733103	36	8150											
ADAMTSL1	92949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	18775867	18775867	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcctttctcttcctccatcAggccctgtatgctggcaacc	7	16	2	0	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001040272	exon18	c.A2524T	p.R842W	TCCATCAGGCCCT		62	13	0.21	83	0	0				0	0					T	18775867	A	T	18775867	3	4	111	1	0	0	0	0	1	0	0	0	273	179	7	5	2598	5	ADAMTSL1	9	18775867	Missense_Mutation	SNP	A	TCGA-XE-A8H5-01A-11D-A435-10		18775867	122437564	37	8151											
TMOD1	7111	broad.mit.edu	37	chr9	100361953	100361953	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gcggacctgactgggcccatCattcccaagtgccggagtgg	14	13	1	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	TMOD1	NM_001166116	exon10	c.C1053G	p.I351M	GCCCATCATTCCC		142	3	0.02	114	0	0		29		70	1	0.01				G	100361953	C	G	100361953	3	3	111	1	0	0	0	0	1	0	0	0	16292	816	29	5	1087	5	TMOD1	9	100361953	Missense_Mutation	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10	81586086	100361953	40851478	38	8152											
BAAT	570	broad.mit.edu	37	chr9	104133369	104133369	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	attaactctaagtcataaagTtttacttggacctggaaagg	8	6	2	0	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	BAAT	NM_001127610	exon2	c.A318T	p.K106N	ATAAAGTTTTACT		195	6	0.03	176	0	0		52		0	0					A	104133369	T	A	104133369	3	1	111	1	0	0	0	0	1	0	0	0	1278	1722	60	5	950	5	BAAT	9	104133369	Missense_Mutation	SNP	T	TCGA-XE-A8H5-01A-11D-A435-10	3771416	104133369	37080062	39	8153											
FUBP3	8939	mdanderson.org	37	chr9	133510064	133510064	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcgcacaggccagcagagCcagccgcagagcagccagcc	12	17	0	2	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_003934	exon17	c.C1521T	p.S507S	GCAGAGCCAGCCG		44	3	0.07	39	0	0				212	0	0				T	133510064	C	T	133510064	2	4	111	1	0	0	0	0	0	0	0	1	6127	738	26	2		2	FUBP3	9	133510064	Silent	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10	29376695	133510064	7703367	40	8154											
NOTCH1	4851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	139396539	139396539	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgaagcgttcttcagggGcctggggggtgaggggtcga	20	7	3	2	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_017617	exon29	c.C5386A	p.P1796T	TCAGGGGCCTGGG		47	29	0.62	46	0	0				18	7	0.39				T	139396539	G	T	139396539	3	4	111	1	0	0	0	0	1	0	0	0	10593	1217	42	2	2305	2	NOTCH1	9	139396539	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	5886475	139396539	1816892	41	8155											
DIP2C	22982	mdanderson.org	37	chr10	395386	395386	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acgcaggtcagcgagttcgcTatcgcaccctgcgggccgat	13	14	1	0	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_014974	exon25	c.A2994G	p.I998M	GTTCGCTATCGCA		49	4	0.08	42	0	0				24	0	0				C	395386	T	C	395386	3	2	111	1	0	0	0	0	1	0	0	0	4557	1512	53	4	1728	4	DIP2C	10	395386	Missense_Mutation	SNP	T	TCGA-XE-A8H5-01A-11D-A435-10		395386	135139361	42	8156											
ATOH7	220202	mdanderson.org	37	chr10	69991089	69991089	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggtagtggtcgcggccgaAgtgctcacagtggagaccca	16	10	1	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	ATOH7,NS,carcinoma,+2,1	ATOH7	NM_145178	exon1	c.T346C	p.F116L	GGCCGAAGTGCTC		48	3	0.06	28	0	0		2	1	3	0	0				G	69991089	A	G	69991089	3	3	111	1	0	0	0	0	1	0	0	0	1112	72	3	4	116	4	ATOH7	10	69991089	Missense_Mutation	SNP	A	TCGA-XE-A8H5-01A-11D-A435-10	69595703	69991089	65543658	43	8157											
NEUROG3	50674	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	71332771	71332771	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tctcacgggtcacttggacaGtgggcgcacccgagggttga	15	11	2	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_020999	exon2	c.C29G	p.T10S	TGGACAGTGGGCG		31	7	0.23	46	0	0				0	0					C	71332771	G	C	71332771	3	2	111	1	0	0	0	0	1	0	0	0	10400	1029	36	5	619	5	NEUROG3	10	71332771	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	1341682	71332771	64201976	44	8158											
C10orf76	79591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	103766354	103766354	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggggttgtaggagcaggacTgacaggggtcgtcaccaagc	17	8	1	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_024541	exon14	c.A991G	p.S331G	CAGGACTGACAGG		70	15	0.21	66	0	0				82	33	0.4				C	103766354	T	C	103766354	3	2	111	1	0	0	0	0	1	0	0	0	1620	1580	55	4	1130	4	C10orf76	10	103766354	Missense_Mutation	SNP	T	TCGA-XE-A8H5-01A-11D-A435-10	32433583	103766354	31768393	45	8159											
FANK1	92565	mdanderson.org	37	chr10	127585221	127585221	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagccgaccatggagcccCagagtaagggaggcccgggc	16	13	0	1	rs202109621		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_145235	exon1	c.C10T	p.Q4X	GAGCCCCAGAGTA		17	2	0.12	17	0	0				31	0	0				T	127585221	C	T	127585221	4	4	111	1	0	0	0	0	0	1	0	0	5704	595	21	3	12	3	FANK1	10	127585221	Nonsense_Mutation	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10	23818867	127585221	7949526	46	8160											
ANO9	338440	mdanderson.org	37	chr11	431763	431763	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acgtcttcttcaggcgtcccTccccctggctcgggtgacag	11	16	3	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	ANO9,bladder,carcinoma,0,1	ANO9	NM_001012302	exon7	c.A470G	p.E157G	CGTCCCTCCCCCT		42	3	0.07	67	0	0		0	1	3	0	0				C	431763	T	C	431763	3	2	111	1	0	0	0	0	1	0	0	0	698	1551	54	4	1946	4	ANO9	11	431763	Missense_Mutation	SNP	T	TCGA-XE-A8H5-01A-11D-A435-10		431763	134574753	47	8161											
MUC6	4588	bcgsc.ca	37	chr11	1017092	1017092	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctaaatgagcttggggattgGctggtcccactggtggtcgg	16	8	0	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	MUC6	NM_005961	exon31	c.C5709G	p.S1903R	GGATTGGCTGGTC		133	12	0.09	246	8	0.0325203252		408		1	0	0				C	1017092	G	C	1017092	3	2	111	1	0	0	0	0	1	0	0	0	10027	1194	42	5	1622	5	MUC6	11	1017092	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	585329	1017092	133989424	48	8162											
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	1271284	1271284	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccggggacgacctggatcCtcacagagctgaccacagca	11	15	1	2	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_002458	exon31	c.C13174T	p.L4392F	TGGATCCTCACAG		109	33	0.3	196	0	0				0	0					T	1271284	C	T	1271284	3	4	111	1	0	0	0	0	1	0	0	0	10026	681	24	3	13305	3	MUC5B	11	1271284	Missense_Mutation	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10	254192	1271284	133735232	49	8163											
ZNF195	7748	mdanderson.org	37	chr11	3383000	3383000	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgtccacagaaacattgaGgcctggctgggcacggtggt	14	9	0	2	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001242841	exon5	c.C358A	p.L120I	CATTGAGGCCTGG		34	3	0.09	63	0	0				23	0	0				T	3383000	G	T	3383000	3	4	111	1	0	0	0	0	1	0	0	0	17815	1000	35	3	1555	3	ZNF195	11	3383000	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	2111716	3383000	131623516	50	8164											
RRP8	23378	mdanderson.org	37	chr11	6623111	6623111	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caacattgtccaggtgctggGctgaatttataggggcatgt	13	7	0	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_015324	exon2	c.C434T	p.A145V	TGCTGGGCTGAAT		52	3	0.06	112	0	0				86	0	0				A	6623111	G	A	6623111	3	1	111	1	0	0	0	0	1	0	0	0	13741	1203	42	2	960	2	RRP8	11	6623111	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	3240111	6623111	128383405	51	8165											
DCHS1	8642	mdanderson.org	37	chr11	6644407	6644407	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcatctgtggcctgcacgtGacccaagctgtggccacgcc	11	16	2	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_003737	exon21	c.C8500A	p.H2834N	GCACGTGACCCAA		52	4	0.08	43	0	0				96	0	0				T	6644407	G	T	6644407	3	4	111	1	0	0	0	0	1	0	0	0	4310	1290	45	3	1400	3	DCHS1	11	6644407	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	21296	6644407	128362109	52	8166											
RCN1	5954	mdanderson.org	37	chr11	32119923	32119923	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	cgcagagtttcatgattcttCagatcatcacacctttaaaa	5	10	5	3	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_002901	exon3	c.C476A	p.S159X	ATTCTTCAGATCA		45	3	0.07	91	0	0				116	0	0				A	32119923	C	A	32119923	4	1	111	1	0	0	0	0	0	1	0	0	13230	838	29	3	486	3	RCN1	11	32119923	Nonsense_Mutation	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10	25475516	32119923	102886593	53	8167											
SLC15A3	51296	mdanderson.org	37	chr11	60718930	60718930	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacggccgcgcccgccgcccGccgccaccgtcgagggcccc	13	24	0	0	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_016582	exon1	c.C94T	p.R32W	CCGCCCGCCGCCA		25	3	0.12	20	0	0				2	0	0				A	60718930	G	A	60718930	3	1	111	1	0	0	0	0	1	0	0	0	14454	1086	38	1	1683	1	SLC15A3	11	60718930	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	28599007	60718930	74287586	54	8168											
SIPA1	6494	mdanderson.org	37	chr11	65408903	65408903	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttgtgtgtgagctcgggGgtgagggtgagctaggcctg	20	6	0	3	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_006747	exon2	c.G511T	p.G171C	CTCGGGGGTGAGG		21	2	0.1	44	0	0				29	0	0				T	65408903	G	T	65408903	3	4	111	1	0	0	0	0	1	0	0	0	14382	1232	43	3	513	3	SIPA1	11	65408903	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	4689973	65408903	69597613	55	8169											
CPT1A	1374	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	68527806	68527806	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctccaaggctcagataaaaCctattgagtgaaacagggaa	9	8	2	3	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001876	exon17	c.G2029A	p.V677I	ATAAAACCTATTG		95	9	0.09	182	0	0				90	3	0.03				T	68527806	C	T	68527806	3	4	111	1	0	0	0	0	1	0	0	0	3854	521	18	3	344	3	CPT1A	11	68527806	Missense_Mutation	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10	3118903	68527806	66478710	56	8170											
IL18BP	10068	mdanderson.org	37	chr11	71711470	71711470	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcagagccacacctgtctcGcagaccaccacagctgccac	8	18	2	2	rs202132601	bycluster;by1000genomes	TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001039660	exon3	c.G102A	p.S34S	TGTCTCGCAGACC		37	3	0.08	64	0	0	0.001			156	0	0				A	71711470	G	A	71711470	2	1	111	1	0	0	0	0	0	0	0	1	7689	1074	38	1		1	IL18BP	11	71711470	Silent	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	3183664	71711470	63295046	57	8171											
INTS4	92105	broad.mit.edu	37	chr11	77635932	77635932	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agcctctcgaatatctctggAtgaatccttttaaaaaaaaa	5	8	2	1	rs148749715		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	INTS4	NM_033547	exon12	c.T1378G	p.S460A	CTCTGGATGAATC		202	3	0.01	285	2	0.0070175439		89		66	0	0				C	77635932	A	C	77635932	3	2	111	1	0	0	0	0	1	0	0	0	7823	333	12	4	1561	4	INTS4	11	77635932	Missense_Mutation	SNP	A	TCGA-XE-A8H5-01A-11D-A435-10	5924462	77635932	57370584	58	8172											
TTC12	54970	mdanderson.org	37	chr11	113233143	113233143	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agagctgctggtgttctgagCcggaccctttcttcctctct	10	13	3	2	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_017868	exon19	c.C1635T	p.S545S	TCTGAGCCGGACC		41	3	0.07	49	0	0				28	0	0				T	113233143	C	T	113233143	2	4	111	1	0	0	0	0	0	0	0	1	16740	738	26	2		2	TTC12	11	113233143	Silent	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10	35597211	113233143	21773373	59	8173											
C2CD2L	9854	broad.mit.edu	37	chr11	118984835	118984835	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctatccctgggctatgcgGcatccctggaagcctcagtg	12	14	1	0	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	C2CD2L	NM_014807	exon13	c.G1672A	p.A558T	TATGCGGCATCCC		45	3	0.07	60	0	0		39		18	0	0				A	118984835	G	A	118984835	3	1	111	1	0	0	0	0	1	0	0	0	2167	1203	42	2	1722	2	C2CD2L	11	118984835	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	5751692	118984835	16021681	60	8174											
PRDM10	56980	mdanderson.org	37	chr11	129785738	129785738	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaatgtgggctttgcgcttGctggcacttttataaacctg	11	8	0	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_020228	exon17	c.C2355A	p.S785R	GCGCTTGCTGGCA		39	3	0.08	71	0	0				17	0	0				T	129785738	G	T	129785738	3	4	111	1	0	0	0	0	1	0	0	0	12502	1310	46	2	1151	2	PRDM10	11	129785738	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	10800903	129785738	5220778	61	8175											
WNK1	65125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	968427	968427	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagatattccatcaaagacCttttgaaccatgccttcttc	5	11	2	3	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001184985	exon6	c.C1417T	p.L473F	AAAGACCTTTTGA		556	44	0.08	217	0	0				282	18	0.06				T	968427	C	T	968427	3	4	111	1	0	0	0	0	1	0	0	0	17436	681	24	3	1439	3	WNK1	12	968427	Missense_Mutation	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10		968427	132883468	62	8176											
WBP11	51729	broad.mit.edu	37	chr12	14941901	14941901	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacctggaggtgcagggggAggtagccttggtgggggtcc	20	8	1	0	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	WBP11	NM_016312	exon11	c.T1476C	p.P492P	AGGGGGAGGTAGC		279	6	0.02	113	2	0.017699115		66		1037	9	0.01				G	14941901	A	G	14941901	2	3	111	1	0	0	0	0	0	0	0	1	17317	291	11	4		4	WBP11	12	14941901	Silent	SNP	A	TCGA-XE-A8H5-01A-11D-A435-10	13973474	14941901	118909994	63	8177			1	16		2	2	34	A		9.486986e-05
WBP11	51729	broad.mit.edu	37	chr12	14941934	14941934	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggggtccacgaggagggggAccaggaggcagacctggagg	22	8	0	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	WBP11	NM_016312	exon11	c.T1443C	p.G481G	AGGGGGACCAGGA		246	4	0.02	93	0	0		66		1043	10	0.01				G	14941934	A	G	14941934	2	3	111	1	0	0	0	0	0	0	0	1	17317	262	10	4		4	WBP11	12	14941934	Silent	SNP	A	TCGA-XE-A8H5-01A-11D-A435-10	33	14941934	118909961	64	8178			1	16		2	2	34	A		9.486986e-05
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	25398285	25398285	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcactcttgcctacgccacCagctccaactaccacaagtt	6	17	1	0	rs121913530	bycluster	TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	KRAS_ENST00000256078,NS,adenocarcinoma,+1,25136	KRAS_ENST00000256078	NM_004985	exon2	c.G34C	p.G12R	CGCCACCAGCTCC		660	34	0.05	179	0	0		1	25136	214	26	0.12				G	25398285	C	G	25398285	3	3	111	1	0	0	0	0	1	0	0	0	8480	594	21	5	672	5	KRAS	12	25398285	Missense_Mutation	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10	10456351	25398285	108453610	65	8179											
ATF7	11016	mdanderson.org	37	chr12	53927032	53927032	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatgacaagagggagggagCcagtgggagacctagaggag	19	6	0	4	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_006856	exon7	c.G572A	p.G191D	AGGGAGCCAGTGG		105	5	0.05	83	0	0				30	0	0				T	53927032	C	T	53927032	3	4	111	1	0	0	0	0	1	0	0	0	1085	739	26	2	903	2	ATF7	12	53927032	Missense_Mutation	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10	28528747	53927032	79924863	66	8180											
MTIF3	219402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	28014201	28014201	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgcaatcctgtcatgagctGatactctgcaggttctgtgc	10	11	3	2	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001166263	exon4	c.C385A	p.Q129K	TGAGCTGATACTC		110	46	0.42	120	0	0				131	53	0.4				T	28014201	G	T	28014201	3	4	111	1	0	0	0	0	1	0	0	0	9982	1299	45	3	463	3	MTIF3	13	28014201	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10		28014201	87155677	67	8181											
FRY	10129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	32721459	32721459	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgagttgcactggaatctcTctacagattactttgggttt	9	8	2	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_023037	exon12	c.T1220G	p.L407R	AATCTCTCTACAG		84	30	0.36	115	0	0				1	0	0				G	32721459	T	G	32721459	3	3	111	1	0	0	0	0	1	0	0	0	6097	1551	54	4	1266	4	FRY	13	32721459	Missense_Mutation	SNP	T	TCGA-XE-A8H5-01A-11D-A435-10	4707258	32721459	82448419	68	8182											
PPP1R13B	23368	mdanderson.org	37	chr14	104206527	104206527	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggaggggctgggctggtaGaaaggggtgccctccatgcc	19	9	0	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_015316	exon12	c.C2226A	p.F742L	CTGGTAGAAAGGG		41	3	0.07	40	0	0				29	0	0				T	104206527	G	T	104206527	3	4	111	1	0	0	0	0	1	0	0	0	12405	933	33	3	1070	3	PPP1R13B	14	104206527	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10		104206527	3143013	69	8183											
AHNAK2	113146	mdanderson.org	37	chr14	105406054	105406054	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggagctgtagggacataGctgcctccacgtttgaccca	12	12	0	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_138420	exon7	c.C15734A	p.A5245D	GACATAGCTGCCT		39	3	0.08	85	0	0				2	0	0				T	105406054	G	T	105406054	3	4	111	1	0	0	0	0	1	0	0	0	412	971	34	2	1657	2	AHNAK2	14	105406054	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	1199527	105406054	1943486	70	8184											
HERC1	8925	ucsc.edu	37	chr15	64039940	64039940	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	taccttgatgaagggaaaggGagtgggggaatctcactgtt	15	5	1	2	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	HERC1	NM_003922	exon11	c.C2337A	p.L779L	GAAAGGGAGTGGG		44	4	0.09	53	0	0		624		10	0	0				T	64039940	G	T	64039940	2	4	111	1	0	0	0	0	0	0	0	1	7097	1161	41	3		3	HERC1	15	64039940	Silent	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10		64039940	38491452	71	8185											
PLEKHO2	80301	mdanderson.org	37	chr15	65153711	65153711	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agctgcgccctggagcatgtGacacgggaccgggtgcgagg	18	11	0	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_025201	exon5	c.G420T	p.V140V	GCATGTGACACGG		45	3	0.07	52	0	0				60	0	0				T	65153711	G	T	65153711	2	4	111	1	0	0	0	0	0	0	0	1	12132	1277	45	3		3	PLEKHO2	15	65153711	Silent	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	1113771	65153711	37377681	72	8186											
CELF6	60677	mdanderson.org	37	chr15	72608195	72608195	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggacttacccctggcagGgtcttctgctcgtgcagtgc	14	12	2	0	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001172684	exon2	c.C336T	p.T112T	TGGCAGGGTCTTC		30	3	0.1	42	0	0				16	0	0				A	72608195	G	A	72608195	2	1	111	1	0	0	0	0	0	0	0	1	3242	1219	43	3		3	CELF6	15	72608195	Silent	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	7454484	72608195	29923197	73	8187											
HAPLN3	145864	mdanderson.org	37	chr15	89421275	89421275	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaagcttcggaccccagGctctgggggcccacagttag	13	14	1	0	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_178232	exon5	c.C1009A	p.P337T	CCCCAGGCTCTGG		43	3	0.07	48	0	0				33	0	0				T	89421275	G	T	89421275	3	4	111	1	0	0	0	0	1	0	0	0	6996	1203	42	2	77	2	HAPLN3	15	89421275	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	16813080	89421275	13110117	74	8188											
ROGDI	79641	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	4848606	4848606	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgatctcggggagggtgagGgtggcgggggtggtgagccg	25	6	1	2	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	ROGDI	NM_024589	exon7	c.C495T	p.T165T	GGTGAGGGTGGCG		20	7	0.35	23	0	0		11		119	31	0.26				A	4848606	G	A	4848606	2	1	111	1	0	0	0	0	0	0	0	1	13571	1219	43	3		3	ROGDI	16	4848606	Silent	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10		4848606	85506147	75	8189											
DNAH3	55567	broad.mit.edu	37	chr16	20976354	20976354	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caatgttttcctccaagtccTttttcttggtgttcatctct	5	11	3	0	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	DNAH3_ENST00000261383,bladder,carcinoma,0,4	DNAH3	NM_017539	exon53	c.A8852G	p.K2951R	AAGTCCTTTTTCT		82	3	0.04	136	0	0		1142	4	5	0	0				C	20976354	T	C	20976354	3	2	111	1	0	0	0	0	1	0	0	0	4631	1609	56	4	3537	4	DNAH3	16	20976354	Missense_Mutation	SNP	T	TCGA-XE-A8H5-01A-11D-A435-10	16127748	20976354	69378399	76	8190											
USP10	9100	hgsc.bcm.edu	37	chr16	84797756	84797756	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagagcaggaagaacaaggTgaaggaagcgaggatgaatg	17	3	0	4	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001272075	exon11	c.T1731C	p.G577G	ACAAGGTGAAGGA		100	5	0.05	125	0	0				277	0	0				C	84797756	T	C	84797756	2	2	111	1	0	0	0	0	0	0	0	1	17100	1683	59	4		4	USP10	16	84797756	Silent	SNP	T	TCGA-XE-A8H5-01A-11D-A435-10	63821402	84797756	5556997	77	8191											
MAPT	4137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	44060770	44060770	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagacctgcaccaggagggGccgccgctgaagggggcagg	20	11	0	2	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001123066	exon6	c.G600A	p.G200G	GGAGGGGCCGCCG		65	21	0.32	72	0	0				0	0					A	44060770	G	A	44060770	2	1	111	1	0	0	0	0	0	0	0	1	9346	1190	42	2		2	MAPT	17	44060770	Silent	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10		44060770	37134440	78	8192											
PTBP1	5725	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	806515	806515	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatcccgggcctggcggggGcaggaaattctgtattgctg	15	11	1	0	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_002819	exon10	c.G1078A	p.A360T	GCGGGGGCAGGAA		180	29	0.16	168	0	0				776	189	0.24				A	806515	G	A	806515	3	1	111	1	0	0	0	0	1	0	0	0	12773	1203	42	2	1116	2	PTBP1	19	806515	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10		806515	58322468	79	8193											
FBN3	84467	broad.mit.edu	37	chr19	8159377	8159377	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccagggggacagatgcagCggaaggagccctcgaggttc	17	10	0	1	rs137977437		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	FBN3	NM_032447	exon46	c.G5858A	p.R1953H	ATGCAGCGGAAGG		67	16	0.24	74	2	0.027027027		300		120	30	0.25				T	8159377	C	T	8159377	3	4	111	1	0	0	0	0	1	0	0	0	5736	768	27	1	2643	1	FBN3	19	8159377	Missense_Mutation	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10	7352862	8159377	50969606	80	8194											
ANKLE1	126549	broad.mit.edu	37	chr19	17397490	17397501	+	In_Frame_Del	DEL	TGTGTGTGTGTT	TGTGTGTGTGTT	-													tgtgtgtgtgtgtgtgtgtgTgtgtgtgtgtttgtgtgtgt					rs35771129	alternate_allele	TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	TGTGTGTGTGTT	TGTGTGTGTGTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	ANKLE1	.	.	.	.	TGTGTGTGTGTGT		20	8	0.4	17	0	0		27		6	0	0				-	17397501	TGTGTGTGTGTT	-	17397490	7	5	111	1	0	1	0	1	0	0	0	0	628	1711	59	0		0	ANKLE1	19	17397490	In_Frame_Del	DEL	TGTGTGTGTGTT	TCGA-XE-A8H5-01A-11D-A435-10	9238113	17397490	41731493	81	8195											
GATAD2A	54815	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	19611944	19611944	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcaggcaggatgtcggccGccactgtgctgtcccgggag	16	13	0	0	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	GATAD2A	NM_017660	exon9	c.G1219A	p.A407T	TCGGCCGCCACTG		95	18	0.19	101	1	0.0099009901		81		570	144	0.25				A	19611944	G	A	19611944	3	1	111	1	0	0	0	0	1	0	0	0	6299	1087	38	1	1249	1	GATAD2A	19	19611944	Missense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10	2214454	19611944	39517039	82	8196											
ZNF432	9668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	52550107	52550107	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaatagagaaaaagtcacCtgggcattgatcattttctt	7	6	3	2	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_014650	exon2	c.G15A	p.Q5Q	AGTCACCTGGGCA		150	28	0.19	106	0	0				49	4	0.08				T	52550107	C	T	52550107	2	4	111	1	0	0	0	0	0	0	0	1	17962	695	24	3		3	ZNF432	19	52550107	Silent	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10	32938163	52550107	6578876	83	8197											
SRMS	6725	mdanderson.org	37	chr20	62172595	62172595	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcgtgcagcaggacgccgaAggaccagacgtctgacttct	12	13	2	2	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_080823	exon7	c.T1234C	p.F412L	CGCCGAAGGACCA		48	3	0.06	51	0	0				1	0	0				G	62172595	A	G	62172595	3	3	111	1	0	0	0	0	1	0	0	0	15207	72	3	4	240	4	SRMS	20	62172595	Missense_Mutation	SNP	A	TCGA-XE-A8H5-01A-11D-A435-10		62172595	852925	84	8198											
LDOC1L	84247	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr22	44893010	44893010	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctccgcctccccagtcagtcGagacacaaggaaggccacac	9	17	1	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	LDOC1L	NM_032287	exon2	c.C427T	p.R143X	TCAGTCGAGACAC		75	16	0.21	72	0	0		24		20	3	0.15				A	44893010	G	A	44893010	4	1	111	1	0	0	0	0	0	1	0	0	8748	1066	37	1	296	1	LDOC1L	22	44893010	Nonsense_Mutation	SNP	G	TCGA-XE-A8H5-01A-11D-A435-10		44893010	6411556	85	8199											
RPGR	6103	mdanderson.org	37	chrX	38186593	38186593	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggcgcgggcgcaactcacCgggcatcagctcttccggct	13	17	3	0	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001034853	exon1	c.G28A	p.D10N	ACTCACCGGGCAT		23	2	0.09	18	0	0				36	1	0.03				T	38186593	C	T	38186593	3	4	111	1	0	0	0	0	1	0	0	0	13599	666	23	1	4049	1	RPGR	23	38186593	Missense_Mutation	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10		38186593	117083967	86	8200											
IQSEC2	23096	broad.mit.edu	37	chrX	53263992	53263992	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgggggctgctggggaggTgggggaagagagggctgctg	26	4	0	1	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	IQSEC2	NM_001111125	exon15	c.A3876C	p.P1292P	GGGAGGTGGGGGA		19	6	0.32	24	2	0.0833333333		195		47	0	0				G	53263992	T	G	53263992	2	3	111	1	0	0	0	0	0	0	0	1	7861	1683	59	4		4	IQSEC2	23	53263992	Silent	SNP	T	TCGA-XE-A8H5-01A-11D-A435-10	15077399	53263992	102006568	87	8201											
AWAT2	158835	broad.mit.edu	37	chrX	69263370	69263370	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggaaaggcatccagaaaaAggctcccagtgtgagtatgt	13	7	0	2	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	AWAT2	NM_001002254	exon4	c.T430C	p.F144L	AGAAAAAGGCTCC		132	3	0.02	122	0	0		36		5	0	0				G	69263370	A	G	69263370	3	3	111	1	0	0	0	0	1	0	0	0	1233	72	3	4	587	4	AWAT2	23	69263370	Missense_Mutation	SNP	A	TCGA-XE-A8H5-01A-11D-A435-10	15999378	69263370	86007190	88	8202											
GPRASP1	9737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	101909826	101909826	+	Missense_Mutation	SNP	A	A	T													gagctgggaaggaggccaatAacagggccaggcacagggcc					novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001099411	exon3	c.A985T	p.N329Y	GCCAATAACAGGG		35	15	0.43	31	0	0				3	2	0.67				T	101909826	A	T	101909826	3	4	111	1	0	0	0	0	1	0	0	0	6762	362	13	5	987	5	GPRASP1	23	101909826	Missense_Mutation	SNP	A	TCGA-XE-A8H5-01A-11D-A435-10	32646456	101909826	53360734	89	8203	18	2									
GPRASP1	9737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	101909834	101909834	+	Silent	SNP	C	C	A													aaggaggccaataacagggcCaggcacagggccaagcgaga					novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001099411	exon3	c.C993A	p.A331A	CAGGGCCAGGCAC		31	14	0.45	32	0	0				5	2	0.4				A	101909834	C	A	101909834	2	1	111	1	0	0	0	0	0	0	0	1	6762	581	21	3		3	GPRASP1	23	101909834	Silent	SNP	C	TCGA-XE-A8H5-01A-11D-A435-10	8	101909834	53360726	90	8204	18	2									
LDLRAP1	26119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	25880446	25880446	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggacagacacgcgggagaCgctgctggaggggatgctgt	18	9	0	2	rs142920998	alternate_allele	TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_015627	exon2	c.C122T	p.T41M	GGGAGACGCTGCT		76	21	0.28	56	0	0				44	12	0.27				T	25880446	C	T	25880446	3	4	112	1	0	0	0	0	1	0	0	0	8746	536	19	1	128	1	LDLRAP1	1	25880446	Missense_Mutation	SNP	C	TCGA-XE-A9SE-01A-21D-A435-10		25880446	223370175	1	8205											
DOCK7	85440	broad.mit.edu;mdanderson.org	37	chr1	63021531	63021531	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tagggtaagtatttggtaggCggaaaacataatgaatatat	11	2	0	1	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	DOCK7,caecum,carcinoma,0,2	DOCK7	NM_001271999	exon21	c.G2561A	p.R854H	GGTAGGCGGAAAA		34	3	0.09	46	0	0		184	2	23	7	0.3				T	63021531	C	T	63021531	3	4	112	1	0	0	0	0	1	0	0	0	4719	768	27	1	3884	1	DOCK7	1	63021531	Missense_Mutation	SNP	C	TCGA-XE-A9SE-01A-21D-A435-10	37141085	63021531	186229090	2	8206											
KCND3	3752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	112524653	112524653	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acggtgaagatcatgacgcaCgccgtgtccaggcagaagaa	13	10	1	5	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	KCND3_ENST00000315987,NS,carcinoma,0,2	KCND3_ENST00000315987	NM_004980	exon2	c.G696A	p.A232A	GACGCACGCCGTG		54	13	0.24	65	0	0		0	2	0	0					T	112524653	C	T	112524653	2	4	112	1	0	0	0	0	0	0	0	1	8063	523	19	1		1	KCND3	1	112524653	Silent	SNP	C	TCGA-XE-A9SE-01A-21D-A435-10	49503122	112524653	136725968	3	8207											
RASGRP3	25780	mdanderson.org	37	chr2	33783348	33783348	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggagatttgcccgggcGccctccttgagcagtggtca	14	12	1	2	rs376806433	alternate_allele	TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_001139488	exon16	c.G1650T	p.A550A	CCGGGCGCCCTCC		45	3	0.07	67	0	0				13	0	0				T	33783348	G	T	33783348	2	4	112	1	0	0	0	0	0	0	0	1	13127	1074	38	1		1	RASGRP3	2	33783348	Silent	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10		33783348	209416025	4	8208											
TGFBRAP1	9392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	105886112	105886112	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttctcatgctcgcccagctTcccgtgcaggatggcgctct	10	16	2	0	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_004257	exon11	c.A2023G	p.K675E	CCAGCTTCCCGTG		40	10	0.25	35	0	0				31	9	0.29				C	105886112	T	C	105886112	3	2	112	1	0	0	0	0	1	0	0	0	15883	1792	62	4	567	4	TGFBRAP1	2	105886112	Missense_Mutation	SNP	T	TCGA-XE-A9SE-01A-21D-A435-10	72102764	105886112	137313261	5	8209											
VHL	7428	mdanderson.org	37	chr3	10191524	10191524	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tccggagcctagtcaagcctGagaattacaggagactggac	12	10	1	2	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	VHL,NS,carcinoma,0,1	VHL	NM_000551	exon3	c.G517T	p.E173X	AAGCCTGAGAATT		41	3	0.07	52	0	0		0	1	88	0	0				T	10191524	G	T	10191524	4	4	112	1	0	0	0	0	0	1	0	0	17221	1291	45	3	527	3	VHL	3	10191524	Nonsense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10		10191524	187830906	6	8210											
HACL1	26061	ucsc.edu;bcgsc.ca	37	chr3	15621444	15621444	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctgcacctacacagtatGgatggttgtcagggacaaca	12	9	1	0	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	HACL1	NM_012260	exon9	c.C776A	p.P259Q	CAGTATGGATGGT		42	4	0.1	68	0	0		33		66	0	0				T	15621444	G	T	15621444	3	4	112	1	0	0	0	0	1	0	0	0	6981	1348	47	3	996	3	HACL1	3	15621444	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10	5429920	15621444	182400986	7	8211											
QRICH1	54870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	49094416	49094416	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtttgagccgtattctggTacgtgcctgccacagcctgc	11	13	1	1	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_198880	exon3	c.A1217T	p.Y406F	TTCTGGTACGTGC		105	16	0.15	131	0	0				113	34	0.3				A	49094416	T	A	49094416	3	1	112	1	0	0	0	0	1	0	0	0	12930	1638	57	5	1145	5	QRICH1	3	49094416	Missense_Mutation	SNP	T	TCGA-XE-A9SE-01A-21D-A435-10	33472972	49094416	148928014	8	8212											
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttgtgcaacctacgtgaaTgtaaatattcgagacattga	8	7	0	3	rs121913284		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	PIK3CA_ENST00000263967,NS,adenocarcinoma,0,61	PIK3CA_ENST00000263967	NM_006218	exon5	c.T1035A	p.N345K	CGTGAATGTAAAT		89	26	0.29	64	0	0		0	61	18	7	0.39				A	178921553	T	A	178921553	3	1	112	1	0	0	0	0	1	0	0	0	11960	1461	51	5	1049	5	PIK3CA	3	178921553	Missense_Mutation	SNP	T	TCGA-XE-A9SE-01A-21D-A435-10	129827137	178921553	19100877	9	8213											
SCARB2	950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	77091110	77091110	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctcatctgcttggtaaaaGtgtgggaaagacataatgat	10	6	2	2	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	SCARB2,NS,carcinoma,-2,1	SCARB2	NM_005506	exon8	c.C1023G	p.H341Q	GTAAAAGTGTGGG		89	11	0.12	172	0	0		-2	1	123	17	0.14				C	77091110	G	C	77091110	3	2	112	1	0	0	0	0	1	0	0	0	13934	1020	36	5	433	5	SCARB2	4	77091110	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10		77091110	114063166	10	8214											
SDHA	6389	broad.mit.edu	37	chr5	228449	228449	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aacactgttgttgccacaggGtaggaatctcatttctactt	8	9	2	0	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	SDHA	NM_004168	exon6	c.770+1G>T	.	CACAGGGTAGGAA		52	3	0.06	51	0	0		80		0	0					T	228449	G	T	228449	5	4	112	1	0	0	0	0	0	0	1	0	14016	1275	44	3	793	3	SDHA	5	228449	Splice_Site	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10		228449	180686811	11	8215											
CHSY3	337876	mdanderson.org	37	chr5	129241175	129241175	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaacgccggccagccccCgccacccctgcctgtcatcg	8	24	1	0	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_175856	exon1	c.C653A	p.P218Q	AGCCCCCGCCACC		50	3	0.06	53	0	0				1	0	0				A	129241175	C	A	129241175	3	1	112	1	0	0	0	0	1	0	0	0	3435	652	23	1	655	1	CHSY3	5	129241175	Missense_Mutation	SNP	C	TCGA-XE-A9SE-01A-21D-A435-10	129012726	129241175	51674085	12	8216											
GRK6	2870	mdanderson.org	37	chr5	176863196	176863196	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggaagaagaagatcaagCgggaggaggtggagcggctg	20	4	1	4	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_001004106	exon12	c.C1180T	p.R394W	ATCAAGCGGGAGG		47	3	0.06	75	0	0				133	1	0.01				T	176863196	C	T	176863196	3	4	112	1	0	0	0	0	1	0	0	0	6833	759	27	1	1226	1	GRK6	5	176863196	Missense_Mutation	SNP	C	TCGA-XE-A9SE-01A-21D-A435-10	47622021	176863196	4052064	13	8217											
NOD1	10392	broad.mit.edu	37	chr7	30491698	30491698	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctccactgggctgcgtgtGttccgctgcaccaggctgct	13	14	1	0	rs5743343	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	NOD1	NM_006092	exon6	c.C1335A	p.N445K	GCGTGTGTTCCGC		117	4	0.03	79	0	0		79		10	0	0				T	30491698	G	T	30491698	3	4	112	1	0	0	0	0	1	0	0	0	10562	1368	48	3	1562	3	NOD1	7	30491698	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10		30491698	128646965	14	8218											
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	47947691	47947691	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tacttttctgattcacttggGagtcagcaaagacaagcact	8	9	3	2	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_138295	exon9	c.C1385T	p.S462F	ACTTGGGAGTCAG		69	9	0.13	75	0	0				2	0	0				A	47947691	G	A	47947691	3	1	112	1	0	0	0	0	1	0	0	0	12011	1174	41	3	7360	3	PKD1L1	7	47947691	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10	17455993	47947691	111190972	15	8219											
ZNF277	11179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	111926968	111926969	+	Frame_Shift_Ins	INS	-	-	AGTCC													agccgctttccctgccagaaINSagtccaggtggcaccaccac					novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	ZNF277	NM_021994	exon2	c.132_133insAGTCC	p.E44fs	GCCAGAAAGTCCA		96	13	0.14	103	0	0		46		17	0	0				AGTCC	111926969	-	AGTCC	111926968	7	5	112	1	0	1	1	0	0	0	0	0	17869	11	1	0	138	0	ZNF277	7	111926968	Frame_Shift_Ins	INS	-	TCGA-XE-A9SE-01A-21D-A435-10	63979277	111926968	47211695	16	8220											
PRSS3	5646	mdanderson.org	37	chr9	33794809	33794809	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgcacatgagagagacaaGtggcttcacattgaagaagg	13	6	1	4	rs201061108		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_001197097	exon2	c.G20A	p.S7N	AGACAAGTGGCTT		44	4	0.09	62	0	0				0	0					A	33794809	G	A	33794809	3	1	112	1	0	0	0	0	1	0	0	0	12670	1044	36	3		3	PRSS3	9	33794809	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10		33794809	107418622	17	8221											
SIGMAR1	10280	mdanderson.org	37	chr9	34635841	34635841	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgcctcaccaggcccgtGtactaccgtctcccctgggg	11	16	2	0	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_005866	exon4	c.C460A	p.H154N	GCCCGTGTACTAC		30	3	0.1	45	0	0				55	0	0				T	34635841	G	T	34635841	3	4	112	1	0	0	0	0	1	0	0	0	14370	1377	48	3	215	3	SIGMAR1	9	34635841	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10	841032	34635841	106577590	18	8222											
FAM120A	23196	mdanderson.org	37	chr9	96320139	96320139	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgccaaggtagagaagatgCgccagagcgtcctcgagggg	16	10	0	3	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_014612	exon14	c.C2515T	p.R839C	AAGATGCGCCAGA		33	3	0.09	27	0	0				47	0	0				T	96320139	C	T	96320139	3	4	112	1	0	0	0	0	1	0	0	0	5446	768	27	1	2569	1	FAM120A	9	96320139	Missense_Mutation	SNP	C	TCGA-XE-A9SE-01A-21D-A435-10	61684298	96320139	44893292	19	8223											
RABEPK	10244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	127996190	127996190	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagactgctacactgctctgTttggtgtttggtgggatgaa	13	7	1	2	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_005833	exon8	c.T1050C	p.C350C	GCTCTGTTTGGTG		192	15	0.08	208	0	0				41	4	0.1				C	127996190	T	C	127996190	2	2	112	1	0	0	0	0	0	0	0	1	13014	1731	60	4		4	RABEPK	9	127996190	Silent	SNP	T	TCGA-XE-A9SE-01A-21D-A435-10	31676051	127996190	13217241	20	8224											
OR13A1	79290	mdanderson.org	37	chr10	45799527	45799527	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaatagagctgggccatgCagcccccgtaggagatggag	16	9	0	2	rs115582445	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_001004297	exon4	c.G344A	p.C115Y	GCCATGCAGCCCC		48	3	0.06	94	0	0				0	0					T	45799527	C	T	45799527	3	4	112	1	0	0	0	0	1	0	0	0	10980	710	25	2	646	2	OR13A1	10	45799527	Missense_Mutation	SNP	C	TCGA-XE-A9SE-01A-21D-A435-10		45799527	89735220	21	8225											
TET1	80312	hgsc.bcm.edu;mdanderson.org	37	chr10	70333543	70333543	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tcctcaatcatcatcaaactCagagaaaaattcattacctc	2	12	6	1	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_030625	exon2	c.C1448G	p.S483X	CAAACTCAGAGAA		84	7	0.08	99	0	0				12	3	0.25				G	70333543	C	G	70333543	4	3	112	1	0	0	0	0	0	1	0	0	15827	838	29	5	1450	5	TET1	10	70333543	Nonsense_Mutation	SNP	C	TCGA-XE-A9SE-01A-21D-A435-10	24534016	70333543	65201204	22	8226											
PHLDA2	7262	broad.mit.edu	37	chr11	2950513	2950513	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcggaggtgagcaccccgcGcttcttcttccatagctgga	12	13	2	1	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	PHLDA2,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	PHLDA2	NM_003311	exon1	c.C82A	p.R28S	CCCCGCGCTTCTT		54	4	0.07	82	1	0.012195122		10	1	8	0	0				T	2950513	G	T	2950513	3	4	112	1	0	0	0	0	1	0	0	0	11896	1087	38	1	380	1	PHLDA2	11	2950513	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10		2950513	132056003	23	8227											
ZNF215	7762	mdanderson.org	37	chr11	6953825	6953825	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagaagtcaggacttggGtgaatttacaacatccaaac	9	8	1	3	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_013250	exon3	c.G322T	p.V108L	ACTTGGGTGAATT		49	3	0.06	69	0	0				7	0	0				T	6953825	G	T	6953825	3	4	112	1	0	0	0	0	1	0	0	0	17828	1261	44	3	324	3	ZNF215	11	6953825	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10	4003312	6953825	128052691	24	8228											
SCUBE2	57758	mdanderson.org	37	chr11	9082017	9082017	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaactgcagtggacacctGtcgaagtatccttacaggtg	11	10	0	0	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_001170690	exon8	c.C905A	p.T302K	ACACCTGTCGAAG		50	3	0.06	59	0	0				0	0					T	9082017	G	T	9082017	3	4	112	1	0	0	0	0	1	0	0	0	13998	1377	48	3	2245	3	SCUBE2	11	9082017	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10	2128192	9082017	125924499	25	8229											
LDHAL6A	160287	mdanderson.org	37	chr11	18500372	18500372	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gaggaggcctgcttgcaaaaGagtgcagaaacactttggga	14	7	0	2	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_144972	exon7	c.G954T	p.K318N	GCAAAAGAGTGCA		19	3	0.16	38	0	0				0	0					T	18500372	G	T	18500372	3	4	112	1	0	0	0	0	1	0	0	0	8737	933	33	3	980	3	LDHAL6A	11	18500372	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10	9418355	18500372	116506144	26	8230											
TMEM132A	54972	mdanderson.org	37	chr11	60698068	60698068	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caagctggaccgcttcaaggGctccaggcaccacaccaccc	9	18	1	0	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_017870	exon5	c.G953T	p.G318V	TCAAGGGCTCCAG		37	3	0.08	39	0	0				122	0	0				T	60698068	G	T	60698068	3	4	112	1	0	0	0	0	1	0	0	0	16104	1203	42	2	971	2	TMEM132A	11	60698068	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10	42197696	60698068	74308448	27	8231											
TAS2R20	259295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	11150095	11150096	+	Frame_Shift_Del	DEL	CT	CT	-													acactatcaccagaactacaCtcttagccttcctttttaag					novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	CT	CT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	TAS2R20	NM_176889	exon1	c.380_381del	p.127_127del	ACTACACTCTTAG		214	30	0.14	119	0	0		17		1	0	0				-	11150096	CT	-	11150095	7	5	112	1	0	1	0	1	0	0	0	0	15627	565	20	0	553	0	TAS2R20	12	11150095	Frame_Shift_Del	DEL	CT	TCGA-XE-A9SE-01A-21D-A435-10		11150095	122701800	28	8232											
PRB4	5545	broad.mit.edu	37	chr12	11461592	11461592	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtggggtaccttgggactGgtttcctccttgtgggggtg	18	7	0	0	rs199532199	bycluster;alternate_allele	TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	PRB4	NM_001261399	exon3	c.C325A	p.Q109K	GGGACTGGTTTCC		263	10	0.04	151	2	0.0132450331		59		0	0					T	11461592	G	T	11461592	3	4	112	1	0	0	0	0	1	0	0	0	12496	1357	47	3	422	3	PRB4	12	11461592	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10	311497	11461592	122390303	29	8233											
GXYLT1	283464	broad.mit.edu;mdanderson.org	37	chr12	42491294	42491294	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctggttgcttatcgtcatGgtaaacacctctgttcccat	8	11	2	0	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	GXYLT1	NM_173601	exon7	c.C1111A	p.H371N	CGTCATGGTAAAC		64	4	0.06	53	0	0		47		65	0	0				T	42491294	G	T	42491294	3	4	112	1	0	0	0	0	1	0	0	0	6943	1348	47	3	219	3	GXYLT1	12	42491294	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10	31029702	42491294	91360601	30	8234											
TUBA1A	7846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	49579631	49579631	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggaaacctggggcgccGggtaaatagagaactccagc	14	10	0	1	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_001270399	exon4	c.C518G	p.P173R	GGCGCCGGGTAAA		219	39	0.18	161	0	0				2287	305	0.13				C	49579631	G	C	49579631	3	2	112	1	0	0	0	0	1	0	0	0	16804	1116	39	5	841	5	TUBA1A	12	49579631	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10	7088337	49579631	84272264	31	8235											
MMP19	4327	broad.mit.edu;bcgsc.ca	37	chr12	56231059	56231081	+	Frame_Shift_Del	DEL	AGGGCTGGTTTGGCACTCCCGTA	AGGGCTGGTTTGGCACTCCCGTA	-													ttgccaactcatagcagccgAgggctggtttggcactcccg					novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	AGGGCTGGTTTGGCACTCCCGTA	AGGGCTGGTTTGGCACTCCCGTA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	MMP19	NM_002429	exon9	c.1266_1288del	p.422_430del	CAGCCGAGGGCTG		165	0	0	118	0	0		61		11	0	0				-	56231081	AGGGCTGGTTTGGCACTCCCGTA	-	56231059	7	5	112	1	0	1	0	1	0	0	0	0	9704	304	11	0	242	0	MMP19	12	56231059	Frame_Shift_Del	DEL	AGGGCTGGTTTGGCACTCCCGTA	TCGA-XE-A9SE-01A-21D-A435-10	6651428	56231059	77620836	32	8236											
GRIP1	23426	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	66838439	66838439	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gaggagctgactggcttcttCgaaggtgctgtcttctgttg	14	8	3	1	rs369501964		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	GRIP1	NM_001178074	exon12	c.G1456A	p.E486K	CTTCTTCGAAGGT		194	32	0.16	149	1	0.0067114094		106		2	1	0.5				T	66838439	C	T	66838439	3	4	112	1	0	0	0	0	1	0	0	0	6827	893	31	1	1826	1	GRIP1	12	66838439	Missense_Mutation	SNP	C	TCGA-XE-A9SE-01A-21D-A435-10	10607380	66838439	67013456	33	8237											
PLXNC1	10154	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr12	94542893	94542893	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagcaagccatcggagccaTcgcggcgagccaggaggacg	17	12	0	0	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_005761	exon1	c.T146A	p.I49N	GAGCCATCGCGGC		29	5	0.17	10	0	0				0	0					A	94542893	T	A	94542893	3	1	112	1	0	0	0	0	1	0	0	0	12173	1435	50	5	148	5	PLXNC1	12	94542893	Missense_Mutation	SNP	T	TCGA-XE-A9SE-01A-21D-A435-10	27704454	94542893	39309002	34	8238											
SSH1	54434	broad.mit.edu	37	chr12	109181808	109181809	+	Frame_Shift_Ins	INS	-	-	G													ctctttaagttttctggggcINSgggtttccctgatggtttgg					novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	SSH1,NS,carcinoma,0,1	SSH1	NM_018984	exon15	c.3106_3107insC	p.A1036fs	CTGGGGCGGGTTT		156	4	0.03	107	0	0		144	1	26	0	0				G	109181809	-	G	109181808	7	5	112	1	0	1	1	0	0	0	0	0	15239	768	27	0	47	0	SSH1	12	109181808	Frame_Shift_Ins	INS	-	TCGA-XE-A9SE-01A-21D-A435-10	14638915	109181808	24670087	35	8239											
IRS2	8660	mdanderson.org	37	chr13	110435299	110435299	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agctcccccggggccggcggCggtggcggcggctgcagaga	20	14	0	1	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_003749	exon1	c.G3102A	p.P1034P	CGGCGGCGGTGGC		14	2	0.14	19	0	0				0	0					T	110435299	C	T	110435299	2	4	112	1	0	0	0	0	0	0	0	1	7884	755	27	1		1	IRS2	13	110435299	Silent	SNP	C	TCGA-XE-A9SE-01A-21D-A435-10		110435299	4734579	36	8240											
DCUN1D2	55208	mdanderson.org	37	chr13	114138337	114138337	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtgcacgccataaactggCggaccttgtccttctgagac	11	12	1	1	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_001014283	exon2	c.G38A	p.R13H	AACTGGCGGACCT		47	3	0.06	63	0	0				9	0	0				T	114138337	C	T	114138337	3	4	112	1	0	0	0	0	1	0	0	0	4337	768	27	1	765	1	DCUN1D2	13	114138337	Missense_Mutation	SNP	C	TCGA-XE-A9SE-01A-21D-A435-10	3703038	114138337	1031541	37	8241											
MAPKBP1	23005	mdanderson.org	37	chr15	42114276	42114276	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtggattacagcagcaGctgcctttccagcccggagc	11	14	1	0	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_001128608	exon26	c.G3017T	p.S1006I	GCAGCAGCTGCCT		113	5	0.04	92	0	0				26	0	0				T	42114276	G	T	42114276	3	4	112	1	0	0	0	0	1	0	0	0	9341	971	34	2	3115	2	MAPKBP1	15	42114276	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10		42114276	60417116	38	8242											
RLBP1	6017	mdanderson.org	37	chr15	89761813	89761813	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caccttctgcaaggtgtggcGgggcagctggctgcacgggc	17	12	1	0	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_000326	exon4	c.C124A	p.R42S	TGTGGCGGGGCAG		81	3	0.04	53	0	0				0	0					T	89761813	G	T	89761813	3	4	112	1	0	0	0	0	1	0	0	0	13439	1116	39	1	853	1	RLBP1	15	89761813	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10	47647537	89761813	12769579	39	8243											
MEF2A	4205	mdanderson.org	37	chr15	100214645	100214645	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atgtctgtcacagttccagtGaccagccccaatgctttgtc	8	13	2	1	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_005587	exon6	c.G444T	p.V148V	TCCAGTGACCAGC		131	5	0.04	124	0	0				52	0	0				T	100214645	G	T	100214645	2	4	112	1	0	0	0	0	0	0	0	1	9504	1277	45	3		3	MEF2A	15	100214645	Silent	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10	10452832	100214645	2316747	40	8244											
MSLN	10232	mdanderson.org	37	chr16	815590	815590	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgctgcccgtgctgggCcagcccatcatccgcagcat	12	17	1	0	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_005823	exon10	c.C768T	p.G256G	GCTGGGCCAGCCC		39	3	0.08	27	0	0				0	0					T	815590	C	T	815590	2	4	112	1	0	0	0	0	0	0	0	1	9928	726	26	2		2	MSLN	16	815590	Silent	SNP	C	TCGA-XE-A9SE-01A-21D-A435-10		815590	89539163	41	8245											
CDH5	1003	broad.mit.edu	37	chr16	66437043	66437044	+	Frame_Shift_Ins	INS	-	-	C													gctggctgagctgtacggctINScggacccccgggaggagctg					novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	CDH5	NM_001795	exon12	c.2326_2327insC	p.S776fs	TACGGCTCGGACC		146	7	0.05	150	0	0		111		34	0	0				C	66437044	-	C	66437043	7	5	112	1	0	1	1	0	0	0	0	0	3135	1551	54	0	2368	0	CDH5	16	66437043	Frame_Shift_Ins	INS	-	TCGA-XE-A9SE-01A-21D-A435-10	65621453	66437043	23917710	42	8246											
SPATA2L	124044	mdanderson.org	37	chr16	89763952	89763952	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacaggcagctgtgtgcctgGtagcctgggggctccgagac	17	11	0	1	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_152339	exon3	c.C1065A	p.Y355X	TGCCTGGTAGCCT		18	2	0.11	18	0	0				10	0	0				T	89763952	G	T	89763952	4	4	112	1	0	0	0	0	0	1	0	0	15064	1256	44	3	213	3	SPATA2L	16	89763952	Nonsense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10	23326909	89763952	590801	43	8247											
MPO	4353	mdanderson.org	37	chr17	56355261	56355261	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgtgcaggttgtcaaagggCagcagggcccggccgttgtc	16	11	1	0	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_000250	exon7	c.G1131A	p.L377L	AAAGGGCAGCAGG		29	3	0.1	23	0	0				2	0	0				T	56355261	C	T	56355261	2	4	112	1	0	0	0	0	0	0	0	1	9780	697	25	2		2	MPO	17	56355261	Silent	SNP	C	TCGA-XE-A9SE-01A-21D-A435-10		56355261	24839949	44	8248											
AXIN2	8313	mdanderson.org	37	chr17	63554672	63554672	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcccctggcactgggggccGcggggcatcctcacggaagc	15	15	1	0	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	AXIN2,NS,carcinoma,0,1	AXIN2	NM_004655	exon2	c.C67A	p.R23R	GGGGCCGCGGGGC		38	3	0.08	31	0	0		0	1	22	0	0				T	63554672	G	T	63554672	2	4	112	1	0	0	0	0	0	0	0	1	1235	1086	38	1		1	AXIN2	17	63554672	Silent	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10	7199411	63554672	17640538	45	8249											
UNK	85451	mdanderson.org	37	chr17	73812897	73812897	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttcctcagctgtgtccagCcccacccagccaggtcctgt	8	19	1	0	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_001080419	exon8	c.C1008T	p.S336S	GTCCAGCCCCACC		17	2	0.12	23	0	0				15	0	0				T	73812897	C	T	73812897	2	4	112	1	0	0	0	0	0	0	0	1	17059	738	26	2		2	UNK	17	73812897	Silent	SNP	C	TCGA-XE-A9SE-01A-21D-A435-10	10258225	73812897	7382313	46	8250											
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	74003793	74003794	+	Frame_Shift_Del	DEL	AT	AT	-													ttgttgtctgtggttgtgtcAtagatcccggcgatagggaa					novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	AT	AT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	EVPL,NS,malignant_melanoma,0,1	EVPL	NM_001988	exon22	c.5493_5494del	p.1831_1832del	TGTGTCATAGATC		49	15	0.31	75	0	0		155		2	0	0				-	74003794	AT	-	74003793	7	5	112	1	0	1	0	1	0	0	0	0	5320	224	8	0	612	0	EVPL	17	74003793	Frame_Shift_Del	DEL	AT	TCGA-XE-A9SE-01A-21D-A435-10	190896	74003793	7191417	47	8251											
TNRC6C	57690	mdanderson.org	37	chr17	76046266	76046266	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaccagccagaaccctaccGtacagcctggtggtgaacac	9	15	1	2	rs202206566		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	TNRC6C,rectum,carcinoma,0,1	TNRC6C	NM_018996	exon4	c.G1123A	p.V375I	CCTACCGTACAGC		16	3	0.19	31	0	0		0	1	15	0	0				A	76046266	G	A	76046266	3	1	112	1	0	0	0	0	1	0	0	0	16401	1145	40	1	1125	1	TNRC6C	17	76046266	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10	2042473	76046266	5148944	48	8252											
PDE6G	5148	mdanderson.org	37	chr17	79620321	79620321	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccggaactcagccttgggCggttccaggttcatggtgag	15	10	2	1	rs370812916		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_002602	exon2	c.G15A	p.P5P	CTTGGGCGGTTCC		31	3	0.1	24	0	0				15	0	0				T	79620321	C	T	79620321	2	4	112	1	0	0	0	0	0	0	0	1	11695	755	27	1		1	PDE6G	17	79620321	Silent	SNP	C	TCGA-XE-A9SE-01A-21D-A435-10	3574055	79620321	1574889	49	8253											
REXO1	57455	broad.mit.edu	37	chr19	1827048	1827048	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggaggaggaggaggaggaTggggcgggggaggggggcgg	30	2	0	0	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	REXO1	NM_020695	exon2	c.A1740C	p.P580P	GGAGGATGGGGCG		84	21	0.25	54	8	0.1481481481		55		12	0	0				G	1827048	T	G	1827048	2	3	112	1	0	0	0	0	0	0	0	1	13292	1451	51	4		4	REXO1	19	1827048	Silent	SNP	T	TCGA-XE-A9SE-01A-21D-A435-10		1827048	57301935	50	8254											
DPP9	91039	mdanderson.org	37	chr19	4688811	4688811	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaagcggggctgcttgtGcagggggtcgtcgtcggggc	20	10	0	1	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_139159	exon16	c.C1843A	p.H615N	GCTTGTGCAGGGG		50	3	0.06	38	0	0				67	0	0				T	4688811	G	T	4688811	3	4	112	1	0	0	0	0	1	0	0	0	4759	1319	46	2	863	2	DPP9	19	4688811	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10	2861763	4688811	54440172	51	8255											
UPF1	5976	mdanderson.org	37	chr19	18971766	18971766	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagtacatgcagttcagcgGctccctgcacaccaagctct	9	15	2	0	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_002911	exon17	c.G2432A	p.G811D	TCAGCGGCTCCCT		50	3	0.06	42	0	0				111	0	0				A	18971766	G	A	18971766	3	1	112	1	0	0	0	0	1	0	0	0	17062	1203	42	2	2498	2	UPF1	19	18971766	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10	14282955	18971766	40157217	52	8256											
GRIN2D	2906	mdanderson.org	37	chr19	48945587	48945587	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggtgtactggcgcctgcGgcactgcctggggcccaccc	14	17	0	0	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_000836	exon12	c.G2621T	p.R874L	GCCTGCGGCACTG		56	3	0.05	34	0	0				3	0	0				T	48945587	G	T	48945587	3	4	112	1	0	0	0	0	1	0	0	0	6822	1116	39	1	2663	1	GRIN2D	19	48945587	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10	29973821	48945587	10183396	53	8257											
DHDH	27294	mdanderson.org	37	chr19	49438276	49438276	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggtggcggtggcggcccGcgatctgagccgtgcgaagg	21	10	1	1	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	DHDH,right_lower_lobe,carcinoma,0,1	DHDH	NM_014475	exon2	c.G110T	p.R37L	CGGCCCGCGATCT		21	2	0.1	36	0	0		0	1	8	0	0				T	49438276	G	T	49438276	3	4	112	1	0	0	0	0	1	0	0	0	4507	1087	38	1	116	1	DHDH	19	49438276	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10	492689	49438276	9690707	54	8258											
ATRN	8455	broad.mit.edu	37	chr20	3451967	3451969	+	In_Frame_Del	DEL	GCT	GCT	-													ctgttgttgctctcgccgccGctgctgctgctgctgctgcc					novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	GCT	GCT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	ATRN	NM_139321	exon1	c.213_215del	p.71_72del	GCCGCCGCTGCTG		9	3	0.33	8	0	0		118		1	0	0				-	3451969	GCT	-	3451967	7	5	112	1	0	1	0	1	0	0	0	0	1204	1074	38	0	215	0	ATRN	20	3451967	In_Frame_Del	DEL	GCT	TCGA-XE-A9SE-01A-21D-A435-10		3451967	59573553	55	8259											
GZF1	64412	mdanderson.org	37	chr20	23346327	23346327	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgggagaccggccctacgGctgcaccgagtgcggcgcca	15	16	0	1	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_022482	exon1	c.G1307T	p.G436V	CCTACGGCTGCAC		13	2	0.15	8	0	0				12	1	0.08				T	23346327	G	T	23346327	3	4	112	1	0	0	0	0	1	0	0	0	6954	1203	42	2	1309	2	GZF1	20	23346327	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10	19894360	23346327	39679193	56	8260											
KRTAP10-6	386674	mdanderson.org	37	chr21	46011801	46011801	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggctgggctcacagaccgCctggcagcaggggctggaca	18	12	1	1	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_198688	exon1	c.G565T	p.A189S	AGACCGCCTGGCA		153	5	0.03	142	0	0				0	0					A	46011801	C	A	46011801	3	1	112	1	0	0	0	0	1	0	0	0	8555	739	26	2	536	2	KRTAP10-6	21	46011801	Missense_Mutation	SNP	C	TCGA-XE-A9SE-01A-21D-A435-10		46011801	2118094	57	8261											
ZDHHC8	29801	mdanderson.org	37	chr22	20131012	20131012	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccggcttcggtggcgcccGcaaccctgccctgcagacgt	13	18	0	1	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_013373	exon10	c.G1859T	p.R620L	GCGCCCGCAACCC		21	2	0.1	16	0	0				16	0	0				T	20131012	G	T	20131012	3	4	112	1	0	0	0	0	1	0	0	0	17678	1087	38	1	1897	1	ZDHHC8	22	20131012	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10		20131012	31173554	58	8262											
LZTR1	8216	mdanderson.org	37	chr22	21348866	21348866	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccatgtggaggatgtgctGctcatcatggatgtgtacaa	14	7	2	0	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_006767	exon15	c.G1635T	p.L545L	TGTGCTGCTCATC		36	3	0.08	30	0	0				20	0	0				T	21348866	G	T	21348866	2	4	112	1	0	0	0	0	0	0	0	1	9182	1306	46	2		2	LZTR1	22	21348866	Silent	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10	1217854	21348866	29955700	59	8263											
CELSR1	9620	mdanderson.org	37	chr22	46768935	46768935	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agatgtagtggaggaggatgGcaaccactgtgcacagaaac	14	7	0	2	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_014246	exon25	c.C7604A	p.A2535D	AGGATGGCAACCA		54	3	0.06	51	0	0				9	0	0				T	46768935	G	T	46768935	3	4	112	1	0	0	0	0	1	0	0	0	3243	1203	42	2	1484	2	CELSR1	22	46768935	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10	25420069	46768935	4535631	60	8264											
STS	412	mdanderson.org	37	chrX	7171292	7171292	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggaagccgagagccacGcagcatcaaggccgaacatc	13	12	1	1	rs377179856	alternate_allele	TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_000351	exon2	c.G67T	p.A23S	AGCCACGCAGCAT		39	3	0.08	59	0	0				6	0	0				T	7171292	G	T	7171292	3	4	112	1	0	0	0	0	1	0	0	0	15387	1087	38	1	73	1	STS	23	7171292	Missense_Mutation	SNP	G	TCGA-XE-A9SE-01A-21D-A435-10		7171292	148099268	61	8265											
TFE3	7030	mdanderson.org	37	chrX	48900701	48900701	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgaacacggctcgagggcCctccgcgctggcctctacgc	12	18	1	0	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_006521	exon1	c.G52A	p.G18S	GAGGGCCCTCCGC		19	2	0.11	14	0	0				18	0	0				T	48900701	C	T	48900701	3	4	112	1	0	0	0	0	1	0	0	0	15859	623	22	3	1715	3	TFE3	23	48900701	Missense_Mutation	SNP	C	TCGA-XE-A9SE-01A-21D-A435-10	41729409	48900701	106369859	62	8266											
GLTPD1	80772	mdanderson.org	37	chr1	1262375	1262375	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgagaaggaagaggtcttgCtggacccctacattgccagc	12	10	1	2	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_001029885	exon2	c.C85T	p.L29L	GTCTTGCTGGACC		39	3	0.08	64	0	0				51	0	0				T	1262375	C	T	1262375	2	4	113	1	0	0	0	0	0	0	0	1	6513	796	28	2		2	GLTPD1	1	1262375	Silent	SNP	C	TCGA-XE-AANI-01A-11D-A435-10		1262375	247988246	1	8267											
RPL22	6146	mdanderson.org	37	chr1	6253102	6253102	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcactttgatcctttcttGcaaaaactgctcctgtagaa	6	10	2	2	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_000983	exon3	c.C130T	p.Q44X	TTTCTTGCAAAAA		32	3	0.09	33	0	0				2901	0	0				A	6253102	G	A	6253102	4	1	113	1	0	0	0	0	0	1	0	0	13619	1328	46	2	264	2	RPL22	1	6253102	Nonsense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	4990727	6253102	242997519	2	8268											
AIM1L	55057	mdanderson.org	37	chr1	26664517	26664517	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttaccctgggctcccctgGcttctccacacttgggcagc	9	17	2	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_001039775	exon8	c.C3493A	p.P1165T	CCCCTGGCTTCTC		39	3	0.08	87	0	0				0	0					T	26664517	G	T	26664517	3	4	113	1	0	0	0	0	1	0	0	0	428	1203	42	2	1544	2	AIM1L	1	26664517	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	20411415	26664517	222586104	3	8269											
CSMD2	114784	mdanderson.org	37	chr1	33998696	33998696	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctgccatccgccttgcaGgtgcggtgctcggagccacc	13	16	0	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_052896	exon63	c.C9693A	p.T3231T	CTTGCAGGTGCGG		20	2	0.1	28	0	0				5	0	0				T	33998696	G	T	33998696	2	4	113	1	0	0	0	0	0	0	0	1	3970	987	35	3		3	CSMD2	1	33998696	Silent	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	7334179	33998696	215251925	4	8270											
HSD3B1	3283	mdanderson.org	37	chr1	120054150	120054150	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagaacaagaccaagctgaCagtgctggaaggagacattc	11	10	0	4	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_000862	exon3	c.C170T	p.T57I	AGCTGACAGTGCT		34	3	0.09	42	0	0				0	0					T	120054150	C	T	120054150	3	4	113	1	0	0	0	0	1	0	0	0	7430	478	17	3	176	3	HSD3B1	1	120054150	Missense_Mutation	SNP	C	TCGA-XE-AANI-01A-11D-A435-10	86055454	120054150	129196471	5	8271											
DNMT3A	1788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	25505572	25505572	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtcctttggcgtgtcaccGctttccacctgcaaatgtaa	10	12	1	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_175630	exon4	c.C186T	p.S62S	GTCACCGCTTTCC		95	26	0.27	113	0	0				48	15	0.31				A	25505572	G	A	25505572	2	1	113	1	0	0	0	0	0	0	0	1	4703	1078	38	1		1	DNMT3A	2	25505572	Silent	SNP	G	TCGA-XE-AANI-01A-11D-A435-10		25505572	217693801	6	8272											
EMILIN1	11117	mdanderson.org	37	chr2	27305627	27305627	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgcggggcagggaggccaCcccccaggctacaccagctt	14	17	0	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_007046	exon4	c.C1188T	p.H396H	AGGCCACCCCCCA		10	2	0.2	9	0	0				705	1	0				T	27305627	C	T	27305627	2	4	113	1	0	0	0	0	0	0	0	1	5121	506	18	3		3	EMILIN1	2	27305627	Silent	SNP	C	TCGA-XE-AANI-01A-11D-A435-10	1800055	27305627	215893746	7	8273											
MTA3	57504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	42836614	42836614	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagaagaaattgaggaagaAtctgaaacaacagttgaggc	12	4	1	6	rs201096010	bycluster;alternate_allele	TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_020744	exon4	c.A207G	p.E69E	GGAAGAATCTGAA		110	32	0.29	117	0	0				95	29	0.31				G	42836614	A	G	42836614	2	3	113	1	0	0	0	0	0	0	0	1	9957	98	4	4		4	MTA3	2	42836614	Silent	SNP	A	TCGA-XE-AANI-01A-11D-A435-10	15530987	42836614	200362759	8	8274											
SPEG	10290	mdanderson.org	37	chr2	220347856	220347856	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acaaatgccacctggtgctgCgccccatccccgagctgctg	10	17	0	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_005876	exon30	c.C5671T	p.R1891C	GTGCTGCGCCCCA		43	3	0.07	40	0	0				9	0	0				T	220347856	C	T	220347856	3	4	113	1	0	0	0	0	1	0	0	0	15091	768	27	1	5801	1	SPEG	2	220347856	Missense_Mutation	SNP	C	TCGA-XE-AANI-01A-11D-A435-10	177511242	220347856	22851517	9	8275											
CAND2	23066	mdanderson.org	37	chr3	12851759	12851759	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgcgggtgcccaccagcccGactgccatccgcaccctgat	10	20	0	1	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_001162499	exon5	c.G693T	p.P231P	CAGCCCGACTGCC		20	2	0.1	17	0	0				6	1	0.17				T	12851759	G	T	12851759	2	4	113	1	0	0	0	0	0	0	0	1	2634	1045	37	1		1	CAND2	3	12851759	Silent	SNP	G	TCGA-XE-AANI-01A-11D-A435-10		12851759	185170671	10	8276											
VILL	50853	mdanderson.org	37	chr3	38035877	38035877	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcgcctacaggacgagctGgggggccagaccgtgctgca	16	13	0	1	rs370182077		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_015873	exon3	c.G261T	p.L87L	CGAGCTGGGGGGC		48	3	0.06	65	0	0				9	0	0				T	38035877	G	T	38035877	2	4	113	1	0	0	0	0	0	0	0	1	17224	1335	47	3		3	VILL	3	38035877	Silent	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	25184118	38035877	159986553	11	8277											
ARIH2	10425	bcgsc.ca;mdanderson.org	37	chr3	48999100	48999100	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tttccactggcaagtttcagAgatattggacaggtaaggta	11	6	1	1	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	ARIH2	NM_006321	exon4	c.A311T	p.E104V	TTTCAGAGATATT		77	5	0.06	82	0	0		32		59	0	0				T	48999100	A	T	48999100	3	4	113	1	0	0	0	0	1	0	0	0	921	304	11	5	317	5	ARIH2	3	48999100	Missense_Mutation	SNP	A	TCGA-XE-AANI-01A-11D-A435-10	10963223	48999100	149023330	12	8278											
CACNA2D2	9254	mdanderson.org	37	chr3	50431589	50431589	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctggaagttctctgcagcaTcagccagtctctgagggaca	11	11	4	1	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_006030	exon4	c.A416G	p.D139G	GCAGCATCAGCCA		49	3	0.06	46	0	0				47	0	0				C	50431589	T	C	50431589	3	2	113	1	0	0	0	0	1	0	0	0	2567	1435	50	4	3186	4	CACNA2D2	3	50431589	Missense_Mutation	SNP	T	TCGA-XE-AANI-01A-11D-A435-10	1432489	50431589	147590841	13	8279											
DOCK3	1795	broad.mit.edu;mdanderson.org	37	chr3	51251594	51251594	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcgtggagacatggaaCagattcggagagaaaatccc	11	8	1	3	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	DOCK3	NM_004947	exon14	c.C1168T	p.Q390X	ATGGAACAGATTC		117	6	0.05	118	0	0		397		21	0	0				T	51251594	C	T	51251594	4	4	113	1	0	0	0	0	0	1	0	0	4715	479	17	3	1222	3	DOCK3	3	51251594	Nonsense_Mutation	SNP	C	TCGA-XE-AANI-01A-11D-A435-10	820005	51251594	146770836	14	8280											
GLYCTK	132158	mdanderson.org	37	chr3	52326663	52326663	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcaccccatccatggctGgggcttctgtggaggaagat	13	12	2	1	rs200573074	alternate_allele	TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_145262	exon5	c.G1093T	p.G365W	ATGGCTGGGGCTT		43	3	0.07	42	0	0				18	0	0				T	52326663	G	T	52326663	3	4	113	1	0	0	0	0	1	0	0	0	6523	1348	47	3	1107	3	GLYCTK	3	52326663	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	1075069	52326663	145695767	15	8281											
LPHN3	23284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr4	62679544	62679544	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggcaggcacatcatggaCaagtttcatacatttctccg	9	11	3	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_015236	exon6	c.C1213T	p.Q405X	CATGGACAAGTTT		89	30	0.34	78	0	0				20	1	0.05				T	62679544	C	T	62679544	4	4	113	1	0	0	0	0	0	1	0	0	8961	479	17	3	1235	3	LPHN3	4	62679544	Nonsense_Mutation	SNP	C	TCGA-XE-AANI-01A-11D-A435-10		62679544	128474732	16	8282											
PRLR	5618	mdanderson.org	37	chr5	35068387	35068387	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaagatgcaggtcaccatGctataaaataattcatgaga	9	6	2	2	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_001204316	exon8	c.C786A	p.S262R	CACCATGCTATAA		33	3	0.09	70	0	0				3	0	0				T	35068387	G	T	35068387	3	4	113	1	0	0	0	0	1	0	0	0	12582	1333	46	2	1090	2	PRLR	5	35068387	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10		35068387	145846873	17	8283											
DIAPH1	1729	ucsc.edu	37	chr5	140953699	140953699	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgactaggaacagaaggaGgtacagtaatagctgccgca	12	9	0	1	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	DIAPH1	NM_005219	exon16	c.C1718A	p.P573H	GAAGGAGGTACAG		41	4	0.1	66	0	0		64		32	0	0				T	140953699	G	T	140953699	3	4	113	1	0	0	0	0	1	0	0	0	4546	1000	35	3	2152	3	DIAPH1	5	140953699	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	105885312	140953699	39961561	18	8284											
CCNJL	79616	mdanderson.org	37	chr5	159707575	159707575	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccacggtgtagagctgcttGgaggtggtgacgttgtagcg	18	7	0	2	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_024565	exon3	c.C237A	p.S79S	CTGCTTGGAGGTG		21	2	0.1	58	0	0				10	0	0				T	159707575	G	T	159707575	2	4	113	1	0	0	0	0	0	0	0	1	2951	1335	47	3		3	CCNJL	5	159707575	Silent	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	18753876	159707575	21207685	19	8285											
HLA-F	3134	bcgsc.ca	37	chr6	29694891	29694891	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggctttaggaggggcaggaGcttccttcttcgttcttggc	14	10	2	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	HLA-F	NM_001098479	exon7	c.G1268T	p.S423I	GCAGGAGCTTCCT		52	5	0.1	45	0	0		41		10	0	0				T	29694891	G	T	29694891	3	4	113	1	0	0	0	0	1	0	0	0	7251	971	34	2	1303	2	HLA-F	6	29694891	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10		29694891	141420176	20	8286											
UBR2	23304	broad.mit.edu;bcgsc.ca	37	chr6	42582883	42582894	+	In_Frame_Del	DEL	AGACTGATGCTT	AGACTGATGCTT	-													aaaactcttctctagtggacAgactgatgcttagtgattcc					novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	AGACTGATGCTT	AGACTGATGCTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	UBR2	NM_001184801	exon9	c.1060_1071del	p.354_357del	GTGGACAGACTGA		67	7	0.1	82	0	0		134		10	0	0				-	42582894	AGACTGATGCTT	-	42582883	7	5	113	1	0	1	0	1	0	0	0	0	16962	180	7	0	1094	0	UBR2	6	42582883	In_Frame_Del	DEL	AGACTGATGCTT	TCGA-XE-AANI-01A-11D-A435-10	12887992	42582883	128532184	21	8287											
KLHDC3	116138	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr6	42985044	42985044	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tactgctctggtgaagactaTgagacactgcgtcagataga	11	8	2	5	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	KLHDC3	NM_057161	exon2	c.T114G	p.Y38X	AGACTATGAGACA		48	13	0.27	53	1	0.0188679245		23		249	40	0.16				G	42985044	T	G	42985044	4	3	113	1	0	0	0	0	0	1	0	0	8399	1471	51	4	116	4	KLHDC3	6	42985044	Nonsense_Mutation	SNP	T	TCGA-XE-AANI-01A-11D-A435-10	402161	42985044	128130023	22	8288											
GSTA4	2941	mdanderson.org	37	chr6	52859034	52859034	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatagtggagcttgggccttGctgccatgatagcttttcag	13	8	1	1	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_001512	exon2	c.C8T	p.A3V	GGCCTTGCTGCCA		34	3	0.09	44	0	0				206	0	0				A	52859034	G	A	52859034	3	1	113	1	0	0	0	0	1	0	0	0	6873	1319	46	2	684	2	GSTA4	6	52859034	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	9873990	52859034	118256033	23	8289											
TBX18	9096	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	85473885	85473885	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atgctgcacggcgagcccctTcgcttctcggccatcccccc	9	20	1	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	TBX18	NM_001080508	exon1	c.A15T	p.R5R	GCCCCTTCGCTTC		21	4	0.19	19	0	0		131		2	1	0.5				A	85473885	T	A	85473885	2	1	113	1	0	0	0	0	0	0	0	1	15712	1770	62	5		5	TBX18	6	85473885	Silent	SNP	T	TCGA-XE-AANI-01A-11D-A435-10	32614851	85473885	85641182	24	8290											
RARS2	57038	broad.mit.edu	37	chr6	88251684	88251684	+	Frame_Shift_Del	DEL	A	A	-													tgcagtttttcctcatagccAaacagctggaagccagttcc					novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	RARS2	NM_020320	exon8	c.564delT	p.F188fs	ATAGCCAAACAGC		37	8	0.22	28	0	0		61		51	0	0				-	88251684	A	-	88251684	7	5	113	1	0	1	0	1	0	0	0	0	13110	127	5	0	1224	0	RARS2	6	88251684	Frame_Shift_Del	DEL	A	TCGA-XE-AANI-01A-11D-A435-10	2777799	88251684	82863383	25	8291											
EYA4	2070	broad.mit.edu	37	chr6	133804227	133804227	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttttcactcactgctcaccGggtcttatgcacagaagtat	7	11	4	1	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	EYA4	NM_172105	exon13	c.G1165T	p.G389W	CTCACCGGGTCTT		160	4	0.03	150	0	0		196		34	0	0				T	133804227	G	T	133804227	3	4	113	1	0	0	0	0	1	0	0	0	5359	1116	39	1	1211	1	EYA4	6	133804227	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	45552543	133804227	37310840	26	8292											
FRMD1	79981	broad.mit.edu	37	chr6	168461656	168461656	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gggggcagtgctggctgctgAccccactgcccgggaagctc	16	14	0	1	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	FRMD1	NM_024919	exon9	c.T1127G	p.V376G	CTGCTGACCCCAC		77	24	0.31	84	19	0.2261904762		52		0	0					C	168461656	A	C	168461656	3	2	113	1	0	0	0	0	1	0	0	0	6083	275	10	4	534	4	FRMD1	6	168461656	Missense_Mutation	SNP	A	TCGA-XE-AANI-01A-11D-A435-10	34657429	168461656	2653411	27	8293											
SP8	221833	mdanderson.org	37	chr7	20824970	20824970	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgcccccgccgccgccgcCgctgcccccggaaactccgg	12	24	0	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_182700	exon2	c.G466A	p.G156S	CGCCGCCGCTGCC		37	3	0.08	33	0	0				2	0	0				T	20824970	C	T	20824970	3	4	113	1	0	0	0	0	1	0	0	0	15023	652	23	1	1064	1	SP8	7	20824970	Missense_Mutation	SNP	C	TCGA-XE-AANI-01A-11D-A435-10		20824970	138313693	28	8294											
EGFR	1956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	55273210	55273210	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaccagcaggacttctttcCcaaggaagccaagccaaatg	8	13	1	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_005228	exon28	c.C3533T	p.P1178L	TCTTTCCCAAGGA		162	38	0.23	137	0	0				19	4	0.21				T	55273210	C	T	55273210	3	4	113	1	0	0	0	0	1	0	0	0	4993	623	22	3	3907	3	EGFR	7	55273210	Missense_Mutation	SNP	C	TCGA-XE-AANI-01A-11D-A435-10	34448240	55273210	103865453	29	8295											
SYPL1	6856	mdanderson.org	37	chr7	105752945	105752945	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggccgagtcgactgatccGctggcgaaccaagtagatgt	13	11	0	2	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_006754	exon1	c.C31T	p.R11W	TGATCCGCTGGCG		21	2	0.1	33	0	0				4	0	0				A	105752945	G	A	105752945	3	1	113	1	0	0	0	0	1	0	0	0	15518	1086	38	1	772	1	SYPL1	7	105752945	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	50479735	105752945	53385718	30	8296											
EPHB6	2051	mdanderson.org	37	chr7	142566831	142566831	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttcgtccatcgctcgctGtctgcccacagcgtgctggt	11	16	1	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_004445	exon16	c.G2388T	p.L796L	CTCGCTGTCTGCC		40	3	0.08	52	0	0				82	0	0				T	142566831	G	T	142566831	2	4	113	1	0	0	0	0	0	0	0	1	5206	1364	48	3		3	EPHB6	7	142566831	Silent	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	36813886	142566831	16571832	31	8297											
KEL	3792	mdanderson.org	37	chr7	142639975	142639975	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatacctgcagcgcgatgGctagccccccaacgtctgca	10	16	1	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_000420	exon17	c.C1928A	p.A643D	GCGATGGCTAGCC		45	3	0.07	58	0	0				2	0	0				T	142639975	G	T	142639975	3	4	113	1	0	0	0	0	1	0	0	0	8184	1203	42	2	282	2	KEL	7	142639975	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	73144	142639975	16498688	32	8298											
MFHAS1	9258	broad.mit.edu;mdanderson.org	37	chr8	8749747	8749747	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaggttgagcattttgagCcgctgcaggcagctgaactg	15	8	0	4	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	MFHAS1	NM_004225	exon1	c.G822A	p.R274R	TTTGAGCCGCTGC		20	3	0.15	30	0	0		58		21	0	0				T	8749747	C	T	8749747	2	4	113	1	0	0	0	0	0	0	0	1	9570	726	26	2		2	MFHAS1	8	8749747	Silent	SNP	C	TCGA-XE-AANI-01A-11D-A435-10		8749747	137614275	33	8299											
NPBWR1	2831	mdanderson.org	37	chr8	53852980	53852980	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgtcacactcgtcgtgctGcccttcgcagtcttcgcccg	9	17	2	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_005285	exon1	c.G513T	p.L171L	CGTGCTGCCCTTC		12	2	0.17	21	0	0				0	0					T	53852980	G	T	53852980	2	4	113	1	0	0	0	0	0	0	0	1	10614	1306	46	2		2	NPBWR1	8	53852980	Silent	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	45103233	53852980	92511042	34	8300											
PREX2	80243	mdanderson.org	37	chr8	69002939	69002939	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcctgcaggaagtacaggCggccaacgaaggtaagtggc	15	10	0	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_025170	exon20	c.C2239T	p.R747W	TACAGGCGGCCAA		41	3	0.07	27	0	0				12	0	0				T	69002939	C	T	69002939	3	4	113	1	0	0	0	0	1	0	0	0	12528	759	27	1	2317	1	PREX2	8	69002939	Missense_Mutation	SNP	C	TCGA-XE-AANI-01A-11D-A435-10	15149959	69002939	77361083	35	8301											
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	72987612	72987612	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tggggctccttcttttctccAgggcgccacatcttcctcag	9	15	4	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_007332	exon1	c.T33A	p.P11P	TTCTCCAGGGCGC		32	6	0.19	32	0	0				4	4	1				T	72987612	A	T	72987612	2	4	113	1	0	0	0	0	0	0	0	1	16637	175	7	5		5	TRPA1	8	72987612	Silent	SNP	A	TCGA-XE-AANI-01A-11D-A435-10	3984673	72987612	73376410	36	8302											
CNBD1	168975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	88363932	88363932	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgatagtggaaagtggaaaTataatttcttttgtgggtta	12	1	1	1	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_173538	exon9	c.T1062C	p.N354N	TGGAAATATAATT		71	11	0.15	50	0	0				0	0					C	88363932	T	C	88363932	2	2	113	1	0	0	0	0	0	0	0	1	3614	1403	49	4		4	CNBD1	8	88363932	Silent	SNP	T	TCGA-XE-AANI-01A-11D-A435-10	15376320	88363932	58000090	37	8303											
KIAA1958	158405	mdanderson.org	37	chr9	115336895	115336895	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcaaaagacctggggtagtcCcatcttccctccattcaagc	8	14	2	1	rs186262765	bycluster;by1000genomes;alternate_allele	TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_133465	exon2	c.C535A	p.P179T	GTAGTCCCATCTT		41	3	0.07	70	0	0				9	0	0				A	115336895	C	A	115336895	3	1	113	1	0	0	0	0	1	0	0	0	8305	623	22	3	537	3	KIAA1958	9	115336895	Missense_Mutation	SNP	C	TCGA-XE-AANI-01A-11D-A435-10		115336895	25876536	38	8304											
C5	727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	123794397	123794397	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgtcagaaattaccatattCtttaacttcaaaatatgcgg	5	7	3	1	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_001735	exon6	c.G661A	p.E221K	CATATTCTTTAAC		34	15	0.44	59	0	0				0	0					T	123794397	C	T	123794397	3	4	113	1	0	0	0	0	1	0	0	0	2295	922	32	3	4513	3	C5	9	123794397	Missense_Mutation	SNP	C	TCGA-XE-AANI-01A-11D-A435-10	8457502	123794397	17419034	39	8305											
LAMC3	10319	bcgsc.ca	37	chr9	133914313	133914313	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagctcttccgcagcacaGgccacggcgggcgctgtcac	15	15	2	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	LAMC3	NM_006059	exon5	c.G1039T	p.G347C	AGCACAGGCCACG		43	4	0.09	64	0	0		167		35	0	0				T	133914313	G	T	133914313	3	4	113	1	0	0	0	0	1	0	0	0	8654	1000	35	3	1057	3	LAMC3	9	133914313	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	10119916	133914313	7299118	40	8306											
CEL	1056	mdanderson.org	37	chr9	135939866	135939866	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gcctcctgggtgactctgtgGacatcttcaagggcatcccc	11	14	3	1	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_001807	exon2	c.G151T	p.D51Y	TCTGTGGACATCT		41	3	0.07	59	0	0				83	0	0				T	135939866	G	T	135939866	3	4	113	1	0	0	0	0	1	0	0	0	3231	1174	41	3	157	3	CEL	9	135939866	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	2025553	135939866	5273565	41	8307											
PNPLA7	375775	mdanderson.org	37	chr9	140374861	140374861	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agggtgtgagcgtgccatctAcctggtagagcacgatcctg	14	10	1	2	rs1891630	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_001098537	exon23	c.T2483A	p.V828E	CCATCTACCTGGT		45	2	0.04	73	0	0				2	0	0				T	140374861	A	T	140374861	3	4	113	1	0	0	0	0	1	0	0	0	12217	391	14	5	1597	5	PNPLA7	9	140374861	Missense_Mutation	SNP	A	TCGA-XE-AANI-01A-11D-A435-10	4434995	140374861	838570	42	8308											
NMT2	9397	mdanderson.org	37	chr10	15174829	15174829	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	catgtacctgtcataaatccGaatgtttgctgggatggcac	10	9	1	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_004808	exon6	c.C706A	p.R236R	AAATCCGAATGTT		51	3	0.06	59	0	0				15	0	0				T	15174829	G	T	15174829	2	4	113	1	0	0	0	0	0	0	0	1	10550	1057	37	1		1	NMT2	10	15174829	Silent	SNP	G	TCGA-XE-AANI-01A-11D-A435-10		15174829	120359918	43	8309											
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	70332658	70332658	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaggtaagagccaagagaCaactcagttttggtcccaaa	9	8	1	2	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_030625	exon2	c.C563T	p.T188I	AAGAGACAACTCA		43	10	0.23	46	0	0				9	3	0.33				T	70332658	C	T	70332658	3	4	113	1	0	0	0	0	1	0	0	0	15827	478	17	3	565	3	TET1	10	70332658	Missense_Mutation	SNP	C	TCGA-XE-AANI-01A-11D-A435-10	55157829	70332658	65202089	44	8310											
AHNAK	79026	hgsc.bcm.edu	37	chr11	62294254	62294254	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagggccttcaatgtccacCttgggtcctgagatgtcaac	10	12	3	1	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	AHNAK,NS,carcinoma,-1,1	AHNAK	NM_001620	exon5	c.G7635A	p.K2545K	GTCCACCTTGGGT		71	3	0.04	117	0	0		-1	1	137	1	0.01				T	62294254	C	T	62294254	2	4	113	1	0	0	0	0	0	0	0	1	411	680	24	3		3	AHNAK	11	62294254	Silent	SNP	C	TCGA-XE-AANI-01A-11D-A435-10		62294254	72712262	45	8311											
DYNC2H1	79659	mdanderson.org	37	chr11	102992194	102992194	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttcagaagttgtcaacaGtatagtttgggttcgccagt	10	7	3	1	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_001377	exon10	c.G1454T	p.S485I	TCAACAGTATAGT		42	3	0.07	55	0	0				2	0	0				T	102992194	G	T	102992194	3	4	113	1	0	0	0	0	1	0	0	0	4872	1029	36	3	1492	3	DYNC2H1	11	102992194	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	40697940	102992194	32014322	46	8312											
ERC1	23085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	1137370	1137370	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggggacgtctgccttacGgtgttcggatgactgctatg	15	9	1	1	rs370287516		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_178039	exon2	c.G301A	p.G101S	CCTTACGGTGTTC		136	9	0.07	85	0	0				30	1	0.03				A	1137370	G	A	1137370	3	1	113	1	0	0	0	0	1	0	0	0	5238	1116	39	1	303	1	ERC1	12	1137370	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10		1137370	132714525	47	8313											
PTPRO	5800	broad.mit.edu;bcgsc.ca	37	chr12	15669735	15669742	+	Frame_Shift_Del	DEL	GGTCCTAC	GGTCCTAC	-													atttaatgctctatcctttgGgtcctacggccgtggttctg					novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	GGTCCTAC	GGTCCTAC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	PTPRO	NM_002848	exon9	c.1624_1631del	p.542_544del	CCTTTGGGTCCTA		250	8	0.03	99	0	0		148		43	0	0				-	15669742	GGTCCTAC	-	15669735	7	5	113	1	0	1	0	1	0	0	0	0	12860	1232	43	0	1658	0	PTPRO	12	15669735	Frame_Shift_Del	DEL	GGTCCTAC	TCGA-XE-AANI-01A-11D-A435-10	14532365	15669735	118182160	48	8314	19	3									
PTPRO	5800	bcgsc.ca	37	chr12	15669741	15669742	+	Frame_Shift_Ins	INS	-	-	TTTAATG													gctctatcctttgggtcctaINScggccgtggttctgagctgg					novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	PTPRO,NS,carcinoma,-2,1	PTPRO	NM_002848	exon9	c.1630_1631insTTTAATG	p.T544_A545delinsIX	GGTCCTACGGCCG		243	6	0.02	102	0	0		148	1	47	0	0				TTTAATG	15669742	-	TTTAATG	15669741	7	5	113	1	0	1	1	0	0	0	0	0	12860	391	14	0	1664	0	PTPRO	12	15669741	Frame_Shift_Ins	INS	-	TCGA-XE-AANI-01A-11D-A435-10	6	15669741	118182154	49	8315	19	3									
PTPRO	5800	bcgsc.ca	37	chr12	15669742	15669743	+	Frame_Shift_Ins	INS	-	-	TCTATCCTTTG													ctctatcctttgggtcctacINSggccgtggttctgagctgga					novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	PTPRO,NS,carcinoma,-1,1	PTPRO	NM_002848	exon9	c.1631_1632insTCTATCCTTTG	p.T544fs	GTCCTACGGCCGT		240	6	0.03	101	0	0		148	1	47	0	0				TCTATCCTTTG	15669743	-	TCTATCCTTTG	15669742	7	5	113	1	0	1	1	0	0	0	0	0	12860	536	19	0	1665	0	PTPRO	12	15669742	Frame_Shift_Ins	INS	-	TCGA-XE-AANI-01A-11D-A435-10	1	15669742	118182153	50	8316	19	3									
KRT80	144501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	52567452	52567452	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgtcatactgggccttcaCctcctccacgatgccgctca	9	17	3	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_182507	exon5	c.G763T	p.V255L	CCTTCACCTCCTC		47	11	0.23	45	0	0				9	4	0.44				A	52567452	C	A	52567452	3	1	113	1	0	0	0	0	1	0	0	0	8536	507	18	3	650	3	KRT80	12	52567452	Missense_Mutation	SNP	C	TCGA-XE-AANI-01A-11D-A435-10	36897710	52567452	81284443	51	8317											
SLC16A7	9194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	60168593	60168593	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtacctttttaatacttttGgctggaaaggaagcttcctg	9	7	0	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_001270622	exon5	c.G517A	p.G173S	ACTTTTGGCTGGA		90	31	0.34	74	0	0				0	0					A	60168593	G	A	60168593	3	1	113	1	0	0	0	0	1	0	0	0	14467	1348	47	3	527	3	SLC16A7	12	60168593	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	7601141	60168593	73683302	52	8318											
TRPV4	59341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	110230496	110230496	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taggtccccgtcagcttcagCccacgggtgaagtaaagggc	13	12	2	1	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_021625	exon11	c.G1785A	p.G595G	CTTCAGCCCACGG		84	25	0.3	73	0	0				38	10	0.26				T	110230496	C	T	110230496	2	4	113	1	0	0	0	0	0	0	0	1	16658	726	26	2		2	TRPV4	12	110230496	Silent	SNP	C	TCGA-XE-AANI-01A-11D-A435-10	50061903	110230496	23621399	53	8319											
SRRM4	84530	mdanderson.org	37	chr12	119568524	119568524	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ggaagggcagaagtcccgccGaaggcactcccgccgctgct	14	15	0	1	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_194286	exon8	c.G656T	p.R219L	CCCGCCGAAGGCA		27	2	0.07	19	0	0				9	0	0				T	119568524	G	T	119568524	3	4	113	1	0	0	0	0	1	0	0	0	15226	1058	37	1	686	1	SRRM4	12	119568524	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	9338028	119568524	14283371	54	8320											
MTIF3	219402	ucsc.edu	37	chr13	28014392	28014392	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tattcttttttgtcttttttCcttcattctgggtgtcttca	5	8	6	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	MTIF3	NM_001166263	exon4	c.G194A	p.G65E	TTTTTTCCTTCAT		74	1	0.01	123	0	0		21		111	12	0.11				T	28014392	C	T	28014392	3	4	113	1	0	0	0	0	1	0	0	0	9982	855	30	3	654	3	MTIF3	13	28014392	Missense_Mutation	SNP	C	TCGA-XE-AANI-01A-11D-A435-10		28014392	87155486	55	8321											
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	23874338	23874338	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atggactggttctcccgatcTggaagaaaaaagaggagaag	13	6	2	3	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_002471	exon7	c.503-2A>G	.	CCGATCTGGAAGA		60	22	0.37	73	0	0				0	0					C	23874338	T	C	23874338	5	2	113	1	0	0	0	0	0	0	1	0	10085	1594	55	4	5454	4	MYH6	14	23874338	Splice_Site	SNP	T	TCGA-XE-AANI-01A-11D-A435-10		23874338	83475202	56	8322											
FOXA1	3169	mdanderson.org	37	chr14	38061627	38061627	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggccattcatggaggccGcctgctgcgcacccatggcg	13	16	1	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_004496	exon2	c.C362A	p.A121E	GAGGCCGCCTGCT		13	2	0.15	18	0	0				5	0	0				T	38061627	G	T	38061627	3	4	113	1	0	0	0	0	1	0	0	0	6021	1087	38	1	1060	1	FOXA1	14	38061627	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	14187289	38061627	69287913	57	8323											
FOS	2353	mdanderson.org	37	chr14	75747998	75747998	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagctgcactgcttacacGtcttccttcgtcttcaccta	5	17	3	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_005252	exon4	c.G1014T	p.T338T	TTACACGTCTTCC		35	3	0.09	50	0	0				958	0	0				T	75747998	G	T	75747998	2	4	113	1	0	0	0	0	0	0	0	1	6017	1132	40	1		1	FOS	14	75747998	Silent	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	37686371	75747998	31601542	58	8324											
MGA	23269	ucsc.edu;bcgsc.ca	37	chr15	42058685	42058685	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacatcagctatagaggaagCagctcttgattccagtgaac	9	9	2	3	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	MGA	NM_001164273	exon24	c.C8405T	p.A2802V	AGGAAGCAGCTCT		39	4	0.1	55	0	0		264		26	0	0				T	42058685	C	T	42058685	3	4	113	1	0	0	0	0	1	0	0	0	9589	710	25	2	8495	2	MGA	15	42058685	Missense_Mutation	SNP	C	TCGA-XE-AANI-01A-11D-A435-10		42058685	60472707	59	8325											
UACA	55075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	70976695	70976695	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taagaactatcatggccaagCgcatccagcaagcttatatc	7	11	1	1	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	UACA_ENST00000322954,right_upper_lobe,carcinoma,-1,3	UACA_ENST00000322954	NM_018003	exon8	c.G693A	p.A231A	GCCAAGCGCATCC		89	23	0.26	84	0	0		-1	3	70	16	0.23				T	70976695	C	T	70976695	2	4	113	1	0	0	0	0	0	0	0	1	16884	755	27	1		1	UACA	15	70976695	Silent	SNP	C	TCGA-XE-AANI-01A-11D-A435-10	28918010	70976695	31554697	60	8326											
SEC11A	23478	mdanderson.org	37	chr15	85234840	85234840	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cagatcattagtgccgatgaGacaatcattccaaaatttag	7	8	2	2	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_001271921	exon2	c.C87A	p.V29V	CGATGAGACAATC		75	4	0.05	89	1	0.0112359551				468	0	0				T	85234840	G	T	85234840	2	4	113	1	0	0	0	0	0	0	0	1	14031	929	33	3		3	SEC11A	15	85234840	Silent	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	14258145	85234840	17296552	61	8327											
CACNA1H	8912	mdanderson.org	37	chr16	1260952	1260952	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcgcgtgctgcgtctgctgCggaccctgcggcctctgagg	16	14	2	1	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_021098	exon21	c.C4204T	p.R1402W	CTGCTGCGGACCC		23	3	0.13	19	0	0				35	0	0				T	1260952	C	T	1260952	3	4	113	1	0	0	0	0	1	0	0	0	2563	759	27	1	4282	1	CACNA1H	16	1260952	Missense_Mutation	SNP	C	TCGA-XE-AANI-01A-11D-A435-10		1260952	89093801	62	8328											
SRRM2	23524	bcgsc.ca;mdanderson.org	37	chr16	2819139	2819139	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctcctcctcCtcttcttcctcctcctcttc	0	24	3	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	SRRM2	NM_016333	exon12	c.C7875T	p.S2625S	CTCCTCCTCTTCT		68	5	0.07	64	1	0.015625		263		719	3	0				T	2819139	C	T	2819139	2	4	113	1	0	0	0	0	0	0	0	1	15224	668	24	3		3	SRRM2	16	2819139	Silent	SNP	C	TCGA-XE-AANI-01A-11D-A435-10	1558187	2819139	87535614	63	8329											
PRSS33	260429	mdanderson.org	37	chr16	2835120	2835120	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccgtcgcaggtgcgcgaGtccagcagcggcacccttac	14	15	0	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_152891	exon5	c.C567A	p.D189E	GCGCGAGTCCAGC		18	3	0.17	27	0	0				11	0	0				T	2835120	G	T	2835120	3	4	113	1	0	0	0	0	1	0	0	0	12671	1020	36	3	283	3	PRSS33	16	2835120	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	15981	2835120	87519633	64	8330											
C16orf62	57020	broad.mit.edu	37	chr16	19612991	19612991	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttttcctcccaggaaagCtcgtgtacgagcgcatcttt	8	13	1	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	C16orf62	NM_020314	exon9	c.C997A	p.L333I	GGAAAGCTCGTGT		66	4	0.06	86	1	0.011627907		164		65	3	0.05				A	19612991	C	A	19612991	3	1	113	1	0	0	0	0	1	0	0	0	1832	797	28	2	764	2	C16orf62	16	19612991	Missense_Mutation	SNP	C	TCGA-XE-AANI-01A-11D-A435-10	16777871	19612991	70741762	65	8331											
C16orf88	400506	mdanderson.org	37	chr16	19718523	19718523	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctcaaaaccagcagtatcCcactggccaaactgggttcc	7	14	1	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_001012991	exon5	c.G1086A	p.W362X	AGTATCCCACTGG		40	3	0.08	40	0	0				110	0	0				T	19718523	C	T	19718523	4	4	113	1	0	0	0	0	0	1	0	0	1848	624	22	3	294	3	C16orf88	16	19718523	Nonsense_Mutation	SNP	C	TCGA-XE-AANI-01A-11D-A435-10	105532	19718523	70636230	66	8332											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	30723654	30723654	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacattgggctagactggctGgttaccatgtatgagaagaa	12	7	0	3	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	SRCAP,bladder,carcinoma,+2,1	SRCAP	NM_006662	exon13	c.G1887A	p.L629L	CTGGCTGGTTACC		65	16	0.25	83	0	0		2	1	37	12	0.32				A	30723654	G	A	30723654	2	1	113	1	0	0	0	0	0	0	0	1	15190	1335	47	3		3	SRCAP	16	30723654	Silent	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	11005131	30723654	59631099	67	8333											
ARMC5	79798	mdanderson.org	37	chr16	31473510	31473510	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	caggactcgcagtgcctacaGagcgtggtgcgtgccctccg	14	14	0	1	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_001105247	exon3	c.G642T	p.Q214H	CCTACAGAGCGTG		27	4	0.15	32	0	0				47	0	0				T	31473510	G	T	31473510	3	4	113	1	0	0	0	0	1	0	0	0	953	933	33	3	652	3	ARMC5	16	31473510	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	749856	31473510	58881243	68	8334											
WDR81	124997	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr17	1631599	1631599	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgacaagagcagcaccagcGagacctccctgggtgaggag	15	11	0	4	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	WDR81	NM_001163809	exon1	c.G3346A	p.E1116K	ACCAGCGAGACCT		48	16	0.33	63	2	0.0317460317		180		31	7	0.23				A	1631599	G	A	1631599	3	1	113	1	0	0	0	0	1	0	0	0	17389	1059	37	1	3410	1	WDR81	17	1631599	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10		1631599	79563611	69	8335											
GAS2L2	246176	broad.mit.edu	37	chr17	34077157	34077157	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggcgctggcggcgaggggTcgggcgggggcagggccagc	26	10	0	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	GAS2L2,right_upper_lobe,carcinoma,0,2	GAS2L2	NM_139285	exon2	c.A566C	p.D189A	GAGGGGTCGGGCG		64	33	0.52	60	18	0.3		94	2	5	0	0				G	34077157	T	G	34077157	3	3	113	1	0	0	0	0	1	0	0	0	6286	1667	58	4	2096	4	GAS2L2	17	34077157	Missense_Mutation	SNP	T	TCGA-XE-AANI-01A-11D-A435-10	32445558	34077157	47118053	70	8336											
EMILIN2	84034	ucsc.edu	37	chr18	2913106	2913106	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggcgctacctgatcacgGccaccctcacccccgagaga	10	17	2	2	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	EMILIN2	NM_032048	exon8	c.G2866T	p.A956S	ATCACGGCCACCC		33	4	0.12	45	0	0		97		31	0	0				T	2913106	G	T	2913106	3	4	113	1	0	0	0	0	1	0	0	0	5122	1203	42	2	2896	2	EMILIN2	18	2913106	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10		2913106	75164142	71	8337											
OSBPL1A	114876	mdanderson.org	37	chr18	21747306	21747306	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcacctgggcagaatttGgaggccgtggggctattcgc	15	10	1	1	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_080597	exon25	c.C2522A	p.P841Q	GAATTTGGAGGCC		68	5	0.07	122	0	0				57	0	0				T	21747306	G	T	21747306	3	4	113	1	0	0	0	0	1	0	0	0	11323	1348	47	3	346	3	OSBPL1A	18	21747306	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	18834200	21747306	56329942	72	8338											
KCTD1	284252	mdanderson.org	37	chr18	24127791	24127791	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acgggggctcattgaggtagCggttgagggagctgcggatg	20	6	1	2	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_001142730	exon1	c.G710A	p.R237H	AGGTAGCGGTTGA		14	2	0.14	12	0	0				30	0	0				T	24127791	C	T	24127791	3	4	113	1	0	0	0	0	1	0	0	0	8139	768	27	1	1907	1	KCTD1	18	24127791	Missense_Mutation	SNP	C	TCGA-XE-AANI-01A-11D-A435-10	2380485	24127791	53949457	73	8339											
ZNF236	7776	bcgsc.ca	37	chr18	74637144	74637144	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttggctgggcttttcacaGgtcagaagctcttcagctgt	11	10	5	1	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	ZNF236	NM_007345	exon22	c.3656-1G>T	.	TTCACAGGTCAGA		46	4	0.09	70	0	0		325		0	0					T	74637144	G	T	74637144	5	4	113	1	0	0	0	0	0	0	1	0	17846	1014	35	3	3741	3	ZNF236	18	74637144	Splice_Site	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	50509353	74637144	3440104	74	8340											
OLFM2	93145	mdanderson.org	37	chr19	9965327	9965327	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgcccgggaggctcctctgCaccagcacagagcgcgagcg	15	16	1	1	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_058164	exon6	c.G900A	p.V300V	CCTCTGCACCAGC		42	3	0.07	56	0	0				313	0	0				T	9965327	C	T	9965327	2	4	113	1	0	0	0	0	0	0	0	1	10900	697	25	2		2	OLFM2	19	9965327	Silent	SNP	C	TCGA-XE-AANI-01A-11D-A435-10		9965327	49163656	75	8341											
PRKCSH	5589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	11546956	11546956	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatgctgttgccgctgctGctgctgctacccatgtgctg	13	12	0	1	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_001001329	exon2	c.G18T	p.L6L	GCTGCTGCTGCTG		25	11	0.44	20	0	0				785	318	0.41				T	11546956	G	T	11546956	2	4	113	1	0	0	0	0	0	0	0	1	12567	1306	46	2		2	PRKCSH	19	11546956	Silent	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	1581629	11546956	47582027	76	8342											
ZNF333	84449	bcgsc.ca	37	chr19	14817526	14817526	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccgctatgcagattcagaGggtggtgataccagtgccta	14	9	1	3	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	ZNF333	NM_032433	exon7	c.G452T	p.R151M	TTCAGAGGGTGGT		37	4	0.11	34	0	0		76		18	0	0				T	14817526	G	T	14817526	3	4	113	1	0	0	0	0	1	0	0	0	17906	1000	35	3	474	3	ZNF333	19	14817526	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	3270570	14817526	44311457	77	8343											
ERCC1	2067	ucsc.edu;bcgsc.ca	37	chr19	45918201	45918201	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgtaggtctccaggtacCgcccagcttcctcggggctg	12	15	1	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	ERCC1	NM_001983	exon7	c.G620A	p.R207Q	AGGTACCGCCCAG		30	4	0.13	57	0	0		46		369	0	0				T	45918201	C	T	45918201	3	4	113	1	0	0	0	0	1	0	0	0	5240	652	23	1	418	1	ERCC1	19	45918201	Missense_Mutation	SNP	C	TCGA-XE-AANI-01A-11D-A435-10	31100675	45918201	13210782	78	8344											
LIG1	3978	mdanderson.org	37	chr19	48636323	48636323	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acctcgctgatgccccgggtGggatgggccaacattggttt	14	11	0	1	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_000234	exon18	c.C1641A	p.P547P	CCGGGTGGGATGG		42	3	0.07	77	0	0				111	0	0				T	48636323	G	T	48636323	2	4	113	1	0	0	0	0	0	0	0	1	8820	1335	47	3		3	LIG1	19	48636323	Silent	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	2718122	48636323	10492660	79	8345											
SNRPB	6628	broad.mit.edu	37	chr20	2443298	2443298	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttacctcgcatcccagggggAggaggccgcattcccggagg	15	13	0	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	SNRPB	NM_003091	exon6	c.T669C	p.P223P	AGGGGGAGGAGGC		111	4	0.04	125	0	0		29		592	1	0				G	2443298	A	G	2443298	2	3	113	1	0	0	0	0	0	0	0	1	14914	291	11	4		4	SNRPB	20	2443298	Silent	SNP	A	TCGA-XE-AANI-01A-11D-A435-10		2443298	60582222	80	8346											
REM1	28954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	30064434	30064434	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acccagaaaccttcacctgcCccagatgattggtcttctga	7	14	3	4	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_014012	exon2	c.C186T	p.A62A	ACCTGCCCCAGAT		125	24	0.19	131	0	0				8	2	0.25				T	30064434	C	T	30064434	2	4	113	1	0	0	0	0	0	0	0	1	13273	610	22	3		3	REM1	20	30064434	Silent	SNP	C	TCGA-XE-AANI-01A-11D-A435-10	27621136	30064434	32961086	81	8347											
ZNF512B	57473	mdanderson.org	37	chr20	62595514	62595514	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgggcgtcctcagggcctgGcccctcctgcttcttggagc	13	17	2	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_020713	exon8	c.C1390A	p.P464T	GGCCTGGCCCCTC		39	3	0.08	46	0	0				91	0	0				T	62595514	G	T	62595514	3	4	113	1	0	0	0	0	1	0	0	0	18013	1203	42	2	1328	2	ZNF512B	20	62595514	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10	32531080	62595514	430006	82	8348											
SMC1B	27127	broad.mit.edu	37	chr22	45798264	45798264	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tagttagcattccatgttccTttttcctggctttaactatg	6	9	0	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	SMC1B	NM_148674	exon5	c.A803G	p.K268R	TGTTCCTTTTTCC		109	3	0.03	116	0	0		215		1	0	0				C	45798264	T	C	45798264	3	2	113	1	0	0	0	0	1	0	0	0	14835	1609	56	4	2988	4	SMC1B	22	45798264	Missense_Mutation	SNP	T	TCGA-XE-AANI-01A-11D-A435-10		45798264	5506302	83	8349											
TBC1D22A	25771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	47287258	47287258	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agcactattacgattctaggAacgacgaagttcaccaggac	9	10	2	0	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_014346	exon6	c.A805T	p.N269Y	TCTAGGAACGACG		155	29	0.19	187	0	0				61	16	0.26				T	47287258	A	T	47287258	3	4	113	1	0	0	0	0	1	0	0	0	15667	246	9	5	827	5	TBC1D22A	22	47287258	Missense_Mutation	SNP	A	TCGA-XE-AANI-01A-11D-A435-10	1488994	47287258	4017308	84	8350											
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	53579361	53579361	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctccagaaatggccacggcaGaatctctggtggaagagctc	12	11	1	3	novel		TCGA-XE-AANI-01A-11D-A435-10	TCGA-XE-AANI-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	be4df9d3-88c9-42ae-9752-179602eb36db	168dc95b-9014-4cb0-9d44-1e0e2d747959	.	.	NM_031407	exon63	c.C8792A	p.S2931Y	ACGGCAGAATCTC		149	57	0.38	101	0	0				189	79	0.42				T	53579361	G	T	53579361	3	4	113	1	0	0	0	0	1	0	0	0	7504	942	33	3	4420	3	HUWE1	23	53579361	Missense_Mutation	SNP	G	TCGA-XE-AANI-01A-11D-A435-10		53579361	101691199	85	8351											
SCNN1D	6339	mdanderson.org	37	chr1	1226955	1226955	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcagccgaagagagctggGctgggccccagccccttgag	14	14	1	2	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001130413	exon18	c.G2374T	p.A792S	AGCTGGGCTGGGC		42	3	0.07	56	0	0				5	0	0				T	1226955	G	T	1226955	3	4	114	1	0	0	0	0	1	0	0	0	13982	1203	42	2	2138	2	SCNN1D	1	1226955	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10		1226955	248023666	1	8352											
SKI	6497	mdanderson.org	37	chr1	2160973	2160973	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccgcctcatgtacccgccGcacaagttcgtggtgcactc	10	16	1	0	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_003036	exon1	c.G768T	p.P256P	CCCGCCGCACAAG		30	2	0.07	34	0	0				23	0	0				T	2160973	G	T	2160973	2	4	114	1	0	0	0	0	0	0	0	1	14411	1074	38	1		1	SKI	1	2160973	Silent	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	934018	2160973	247089648	2	8353											
KCNAB2	8514	mdanderson.org	37	chr1	6142261	6142261	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttttctcgtttcagatggcaGagcagctcatgaccttggcc	10	11	3	3	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001199862	exon5	c.G307T	p.E103X	ATGGCAGAGCAGC		47	3	0.06	64	0	0				24	0	0				T	6142261	G	T	6142261	4	4	114	1	0	0	0	0	0	1	0	0	8053	943	33	3	226	3	KCNAB2	1	6142261	Nonsense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	3981288	6142261	243108360	3	8354											
PGD	5226	broad.mit.edu	37	chr1	10464289	10464289	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagtggtggagaggaaggGgcccggtatggcccatcgct	18	9	1	1	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	PGD	NM_002631	exon5	c.G402T	p.G134G	GGAAGGGGCCCGG		59	3	0.05	83	0	0		39		1353	0	0				T	10464289	G	T	10464289	2	4	114	1	0	0	0	0	0	0	0	1	11834	1219	43	3		3	PGD	1	10464289	Silent	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	4322028	10464289	238786332	4	8355											
PGBD5	79605	bcgsc.ca;mdanderson.org	37	chr1	230503883	230503883	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacacagatggtggtggtgaGgaggaggctgcggaggagga	21	5	0	2	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	PGBD5	.	.	.	.	TGGTGAGGAGGAG		112	5	0.04	180	0	0		73		1	0	0				A	230503883	G	A	230503883	2	1	114	1	0	0	0	0	0	0	0	1	11831	1015	35	3		3	PGBD5	1	230503883	Silent	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	220039594	230503883	18746738	5	8356											
OSR1	130497	broad.mit.edu	37	chr2	19553461	19553461	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	atacaggttgggcagatggtCcgaaggcactgtgggcaggc	17	8	0	1	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	OSR1	NM_145260	exon2	c.G106C	p.D36H	GATGGTCCGAAGG		101	3	0.03	126	0	0		29		0	0					G	19553461	C	G	19553461	3	3	114	1	0	0	0	0	1	0	0	0	11339	855	30	5	702	5	OSR1	2	19553461	Missense_Mutation	SNP	C	TCGA-XE-AANJ-01A-11D-A435-10		19553461	223645912	6	8357											
ASXL2	55252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	25976403	25976403	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaacctgtcctaatattacCtctgcccatagtagctttca	5	12	2	1	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	ASXL2_ENST00000435504,NS,carcinoma,0,2	ASXL2_ENST00000435504	NM_018263	exon10	c.G1142A	p.S381N	TATTACCTCTGCC		81	14	0.17	132	0	0		0	2	3	0	0				T	25976403	C	T	25976403	3	4	114	1	0	0	0	0	1	0	0	0	1066	695	24	3	3177	3	ASXL2	2	25976403	Missense_Mutation	SNP	C	TCGA-XE-AANJ-01A-11D-A435-10	6422942	25976403	217222970	7	8358											
ASPRV1	151516	mdanderson.org	37	chr2	70187846	70187846	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtcctcctctatgagctcCaggtcaaactcatcttccag	8	14	4	1	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_152792	exon1	c.G975A	p.L325L	GAGCTCCAGGTCA		55	3	0.05	63	0	0				3	0	0				T	70187846	C	T	70187846	2	4	114	1	0	0	0	0	0	0	0	1	1057	581	21	3		3	ASPRV1	2	70187846	Silent	SNP	C	TCGA-XE-AANJ-01A-11D-A435-10	44211443	70187846	173011527	8	8359											
STAT1	6772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	191843624	191843624	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacccatgtgaatgtgatggCcccttcccgggagctctcac	10	15	1	2	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_007315	exon21	c.G1831A	p.A611T	TGATGGCCCCTTC		66	15	0.23	88	0	0				227	3	0.01				T	191843624	C	T	191843624	3	4	114	1	0	0	0	0	1	0	0	0	15319	739	26	2	445	2	STAT1	2	191843624	Missense_Mutation	SNP	C	TCGA-XE-AANJ-01A-11D-A435-10	121655778	191843624	51355749	9	8360											
GAL3ST2	64090	mdanderson.org	37	chr2	242738496	242738496	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acagatacttccgggtcatcCtcctcctcctcctggccctg	7	18	1	1	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	GAL3ST2,NS,carcinoma,0,1	GAL3ST2	NM_022134	exon2	c.C46A	p.L16I	GTCATCCTCCTCC		61	4	0.07	68	0	0		0	1	0	0					A	242738496	C	A	242738496	3	1	114	1	0	0	0	0	1	0	0	0	6237	681	24	3	52	3	GAL3ST2	2	242738496	Missense_Mutation	SNP	C	TCGA-XE-AANJ-01A-11D-A435-10	50894872	242738496	460877	10	8361											
KLHL18	23276	mdanderson.org	37	chr3	47374795	47374795	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatgacctggtgcgttgctGccacaaatgcaggtgagtga	15	8	0	3	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_025010	exon5	c.G749T	p.C250F	GTTGCTGCCACAA		43	3	0.07	56	0	0				52	0	0				T	47374795	G	T	47374795	3	4	114	1	0	0	0	0	1	0	0	0	8415	1319	46	2	767	2	KLHL18	3	47374795	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10		47374795	150647635	11	8362											
NCKIPSD	51517	mdanderson.org	37	chr3	48719045	48719045	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agggagggggctggacttggGacacggtggtgtgggtgcct	22	6	0	0	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_016453	exon5	c.C767A	p.S256Y	ACTTGGGACACGG		71	4	0.06	86	0	0				127	0	0				T	48719045	G	T	48719045	3	4	114	1	0	0	0	0	1	0	0	0	10271	1174	41	3	1437	3	NCKIPSD	3	48719045	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	1344250	48719045	149303385	12	8363											
MCM2	4171	broad.mit.edu	37	chr3	127323901	127323901	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagcatggcgggcccccGgctggagatccaccaccgct	15	15	0	2	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	MCM2	NM_004526	exon4	c.G575A	p.R192Q	GCCCCCGGCTGGA		161	4	0.02	181	1	0.0055248619		79		165	2	0.01				A	127323901	G	A	127323901	3	1	114	1	0	0	0	0	1	0	0	0	9435	1116	39	1	589	1	MCM2	3	127323901	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	78604856	127323901	70698529	13	8364											
TRH	7200	mdanderson.org	37	chr3	129695840	129695840	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caaaggagctgggaagaagaGgaggaggaggaagagagaga	20	2	0	4	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	TRH,right_upper_lobe,carcinoma,0,2	TRH	NM_007117	exon3	c.G510A	p.E170E	AGAAGAGGAGGAG		52	3	0.06	73	0	0		0	2	33	0	0				A	129695840	G	A	129695840	2	1	114	1	0	0	0	0	0	0	0	1	16538	991	35	3		3	TRH	3	129695840	Silent	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	2371939	129695840	68326590	14	8365											
CHST2	9435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	142840363	142840363	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgtcttccagttgtatagCcccgcgggcagcggggggcg	16	12	2	0	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_004267	exon2	c.C705T	p.S235S	GTATAGCCCCGCG		93	20	0.22	111	0	0				282	89	0.32				T	142840363	C	T	142840363	2	4	114	1	0	0	0	0	0	0	0	1	3426	738	26	2		2	CHST2	3	142840363	Silent	SNP	C	TCGA-XE-AANJ-01A-11D-A435-10	13144523	142840363	55182067	15	8366											
DCUN1D1	54165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	182665069	182665069	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tcatctgcaatcatcgtactGaagtctaaaagaagattcca	6	9	4	3	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_020640	exon6	c.C657A	p.F219L	CGTACTGAAGTCT		184	18	0.1	82	0	0				272	33	0.12				T	182665069	G	T	182665069	3	4	114	1	0	0	0	0	1	0	0	0	4336	1281	45	3	130	3	DCUN1D1	3	182665069	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	39824706	182665069	15357361	16	8367											
MUC4	4585	broad.mit.edu	37	chr3	195505783	195505783	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctggtgacaggaagagggGtggcgtgacctgtggatgct	20	6	0	3	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	MUC4_ENST00000463781,NS,neuroblastoma,+1,1	MUC4	NM_018406	exon2	c.C12668T	p.T4223I	AGAGGGGTGGCGT		285	7	0.02	121	1	0.0082644628		1505	1	42	1	0.02				A	195505783	G	A	195505783	3	1	114	1	0	0	0	0	1	0	0	0	10025	1261	44	3		3	MUC4	3	195505783	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	12840714	195505783	2516647	17	8368			1	17		6	6	4238	N	T_G_A	1.142672e-12
MUC4	4585	bcgsc.ca;mdanderson.org	37	chr3	195506559	195506559	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggaagagaggtggcgtgAcctgtggatactgaggaagt	17	5	0	3	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	MUC4	NM_018406	exon2	c.T11892C	p.G3964G	GGCGTGACCTGTG		87	12	0.14	112	2	0.0178571429		1505		17	3	0.18				G	195506559	A	G	195506559	2	3	114	1	0	0	0	0	0	0	0	1	10025	262	10	4		4	MUC4	3	195506559	Silent	SNP	A	TCGA-XE-AANJ-01A-11D-A435-10	776	195506559	2515871	18	8369			1	17		6	6	4238	N	T_G_A	1.142672e-12
MUC4	4585	hgsc.bcm.edu	37	chr3	195506626	195506626	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctgtggatgctgaggaaGtgctggtgacaggaagaggg	18	6	0	3	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	MUC4_ENST00000463781,NS,carcinoma,-1,3	MUC4_ENST00000463781	NM_018406	exon2	c.C11825T	p.T3942I	GAGGAAGTGCTGG		128	6	0.05	190	1	0.0052631579		-1	3	22	0	0				A	195506626	G	A	195506626	3	1	114	1	0	0	0	0	1	0	0	0	10025	1029	36	3		3	MUC4	3	195506626	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	67	195506626	2515804	19	8370			1	17		6	6	4238	N	T_G_A	1.142672e-12
MUC4	4585	hgsc.bcm.edu	37	chr3	195506986	195506986	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cggtgacaggaagaggggtgGtgtcacctgtggatactgag	18	6	1	3	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	MUC4_ENST00000463781,extremity,malignant_melanoma,-1,2	MUC4_ENST00000463781	NM_018406	exon2	c.C11465G	p.T3822S	GGGGTGGTGTCAC		69	3	0.04	62	1	0.0161290323		-1	2	15	0	0				C	195506986	G	C	195506986	3	2	114	1	0	0	0	0	1	0	0	0	10025	1261	44	5		5	MUC4	3	195506986	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	360	195506986	2515444	20	8371			1	17		6	6	4238	N	T_G_A	1.142672e-12
MUC4	4585	broad.mit.edu	37	chr3	195509580	195509580	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgacaggaagagaggtggcGtgacctgtggatgctgagga	19	5	0	4	rs78985720	alternate_allele	TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	MUC4	NM_018406	exon2	c.C8871G	p.H2957Q	GGTGGCGTGACCT		146	4	0.03	65	0	0		1505		49	0	0				C	195509580	G	C	195509580	3	2	114	1	0	0	0	0	1	0	0	0	10025	1136	40	5		5	MUC4	3	195509580	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	2594	195509580	2512850	21	8372			1	17		6	6	4238	N	T_G_A	1.142672e-12
MUC4	4585	bcgsc.ca	37	chr3	195510020	195510020	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aagagaggtggcgtgacctgTggacactgacgaagcgtcgg	17	8	0	3	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	MUC4	NM_018406	exon2	c.A8431T	p.T2811S	GACCTGTGGACAC		88	13	0.15	115	1	0.0086956522		1505		7	0	0				A	195510020	T	A	195510020	3	1	114	1	0	0	0	0	1	0	0	0	10025	1696	59	5		5	MUC4	3	195510020	Missense_Mutation	SNP	T	TCGA-XE-AANJ-01A-11D-A435-10	440	195510020	2512410	22	8373			1	17		6	6	4238	N	T_G_A	1.142672e-12
LRRC33	375387	broad.mit.edu	37	chr3	196386681	196386681	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcggtgcccagcagcctccCgccccacgcccggatgctca	10	20	1	0	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	LRRC33,NS,carcinoma,-1,1	LRRC33	NM_198565	exon3	c.C167T	p.P56L	GCCTCCCGCCCCA		427	7	0.02	227	0	0		91	1	47	0	0				T	196386681	C	T	196386681	3	4	114	1	0	0	0	0	1	0	0	0	9032	652	23	1	173	1	LRRC33	3	196386681	Missense_Mutation	SNP	C	TCGA-XE-AANJ-01A-11D-A435-10	876661	196386681	1635749	23	8374											
MEF2C	4208	broad.mit.edu	37	chr5	88024334	88024334	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actgactgagggcagatggtGgcatgttatgtaggtgttgc	16	5	0	3	rs17852408		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	MEF2C	NM_001193347	exon11	c.C1106A	p.P369Q	GATGGTGGCATGT		247	4	0.02	328	0	0		184		1	0	0				T	88024334	G	T	88024334	3	4	114	1	0	0	0	0	1	0	0	0	9506	1348	47	3	353	3	MEF2C	5	88024334	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10		88024334	92890926	24	8375											
ANKHD1	54882	hgsc.bcm.edu	37	chr5	139887489	139887489	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccaaatagagaccaatcGgaacacggctctcaccctgg	9	14	1	1	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	ANKHD1_ENST00000261805,colon,carcinoma,+1,3	ANKHD1_ENST00000261805	NM_017747	exon20	c.G3671T	p.R1224L	CCAATCGGAACAC		115	5	0.04	145	0	0		1	3	57	0	0				T	139887489	G	T	139887489	3	4	114	1	0	0	0	0	1	0	0	0	624	1116	39	1	3855	1	ANKHD1	5	139887489	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	51863155	139887489	41027771	25	8376											
PCDHA6	0	broad.mit.edu	37	chr5	140209500	140209500	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctacaacgcgtggctttcGtatgagctgcagcccccggc	13	14	0	1	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	PCDHA6_ENST00000529310,NS,carcinoma,+1,6	PCDHA6	NM_018909	exon1	c.G1824T	p.S608S	GCTTTCGTATGAG		57	3	0.05	76	0	0		442	6	0	0					T	140209500	G	T	140209500	2	4	114	1	0	0	0	0	0	0	0	1	11574	1132	40	1		1	PCDHA6	5	140209500	Silent	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	322011	140209500	40705760	26	8377											
PTK7	5754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	43100169	43100169	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccttgcagagattgaagaCatgccgctatttgagccacg	11	10	0	4	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001270398	exon7	c.C996T	p.D332D	TGAAGACATGCCG		128	27	0.21	123	0	0				168	61	0.36				T	43100169	C	T	43100169	2	4	114	1	0	0	0	0	0	0	0	1	12814	477	17	3		3	PTK7	6	43100169	Silent	SNP	C	TCGA-XE-AANJ-01A-11D-A435-10		43100169	128014898	27	8378											
PHKG1	5260	mdanderson.org	37	chr7	56149324	56149324	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggatcaggacgcttagtaccTtgaacttcccccgggggctg	13	12	1	1	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001258459	exon10	c.A1013T	p.K338M	AGTACCTTGAACT		21	2	0.1	50	0	0				1	0	0				A	56149324	T	A	56149324	3	1	114	1	0	0	0	0	1	0	0	0	11893	1623	56	5	254	5	PHKG1	7	56149324	Missense_Mutation	SNP	T	TCGA-XE-AANJ-01A-11D-A435-10		56149324	102989339	28	8379											
KIAA1549	57670	mdanderson.org	37	chr7	138555928	138555928	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgattttattgctttccGccactcggtcggctggggag	13	9	0	1	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001164665	exon13	c.C4526A	p.A1509E	CTTTCCGCCACTC		33	3	0.09	24	0	0				24	0	0				T	138555928	G	T	138555928	3	4	114	1	0	0	0	0	1	0	0	0	8285	1087	38	1	1358	1	KIAA1549	7	138555928	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	82406604	138555928	20582735	29	8380											
SSPO	23145	mdanderson.org	37	chr7	149500591	149500591	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcccccggggctccttctGcatgacactcgctgcctgcc	10	18	1	1	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_198455	exon54	c.G7992T	p.L2664L	CCTTCTGCATGAC		44	4	0.09	104	0	0				0	0					T	149500591	G	T	149500591	2	4	114	1	0	0	0	0	0	0	0	1	15244	1306	46	2		2	SSPO	7	149500591	Silent	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	10944663	149500591	9638072	30	8381											
DENND3	22898	mdanderson.org	37	chr8	142200511	142200511	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcacggcggccgcctgtGgtgctgtaagtccggcccct	14	15	0	0	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_014957	exon20	c.G3134T	p.W1045L	GCCTGTGGTGCTG		34	3	0.09	49	0	0				24	0	0				T	142200511	G	T	142200511	3	4	114	1	0	0	0	0	1	0	0	0	4460	1357	47	3	3208	3	DENND3	8	142200511	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10		142200511	4163511	31	8382											
ADCK5	203054	mdanderson.org	37	chr8	145616415	145616415	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actaccagccaattgctgccGccagcctggcacaggtgcac	10	16	0	0	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_174922	exon6	c.G625T	p.A209S	GCTGCCGCCAGCC		50	3	0.06	61	0	0				75	1	0.01				T	145616415	G	T	145616415	3	4	114	1	0	0	0	0	1	0	0	0	290	1087	38	1	647	1	ADCK5	8	145616415	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	3415904	145616415	747607	32	8383											
ZNF462	58499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	109689998	109689998	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgagcactcaaatgtaggCagtgctcatatacctccccc	7	15	2	0	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_021224	exon3	c.C3805A	p.Q1269K	TGTAGGCAGTGCT		80	57	0.71	60	0	0				3	3	1				A	109689998	C	A	109689998	3	1	114	1	0	0	0	0	1	0	0	0	17982	711	25	2	3811	2	ZNF462	9	109689998	Missense_Mutation	SNP	C	TCGA-XE-AANJ-01A-11D-A435-10		109689998	31523433	33	8384											
SLC34A3	142680	mdanderson.org	37	chr9	140128920	140128920	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctggccgtcctcgcgggCgccggcctgaccttcgcact	12	18	0	1	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_080877	exon11	c.C1146A	p.G382G	CGCGGGCGCCGGC		23	2	0.09	29	0	0				1	0	0				A	140128920	C	A	140128920	2	1	114	1	0	0	0	0	0	0	0	1	14623	755	27	1		1	SLC34A3	9	140128920	Silent	SNP	C	TCGA-XE-AANJ-01A-11D-A435-10	30438922	140128920	1084511	34	8385											
PLCE1	51196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	95987141	95987141	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtcttttcatatttggtgCatgtggccaaatgctgctgg	11	7	2	0	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_016341	exon5	c.C1888T	p.H630Y	TTGGTGCATGTGG		165	35	0.21	194	0	0				9	4	0.44				T	95987141	C	T	95987141	3	4	114	1	0	0	0	0	1	0	0	0	12081	710	25	2	2188	2	PLCE1	10	95987141	Missense_Mutation	SNP	C	TCGA-XE-AANJ-01A-11D-A435-10		95987141	39547606	35	8386											
HPX	3263	mdanderson.org	37	chr11	6452451	6452451	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaggcccctcagtgagtgCagcccaggagactggtcaca	13	12	2	3	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_000613	exon10	c.G1379A	p.C460Y	TGAGTGCAGCCCA		47	3	0.06	75	0	0				44	0	0				T	6452451	C	T	6452451	3	4	114	1	0	0	0	0	1	0	0	0	7386	710	25	2	13	2	HPX	11	6452451	Missense_Mutation	SNP	C	TCGA-XE-AANJ-01A-11D-A435-10		6452451	128554065	36	8387											
MAPK8IP1	9479	mdanderson.org	37	chr11	45924975	45924975	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggaggagcaggagcagaccCaccgggccatattcaggtga	16	10	1	2	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_005456	exon6	c.C1477T	p.H493Y	CAGACCCACCGGG		18	3	0.17	48	0	0				127	0	0				T	45924975	C	T	45924975	3	4	114	1	0	0	0	0	1	0	0	0	9333	594	21	3	1499	3	MAPK8IP1	11	45924975	Missense_Mutation	SNP	C	TCGA-XE-AANJ-01A-11D-A435-10	39472524	45924975	89081541	37	8388											
LRP4	4038	broad.mit.edu	37	chr11	46924405	46924405	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccactgggcagggatgcagGtacactctccaagagcactc	12	13	1	1	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	LRP4	NM_002334	exon2	c.C128A	p.T43N	ATGCAGGTACACT		131	4	0.03	232	0	0		160		17	0	0				T	46924405	G	T	46924405	3	4	114	1	0	0	0	0	1	0	0	0	9003	1261	44	3	5737	3	LRP4	11	46924405	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	999430	46924405	88082111	38	8389											
SLC3A2	6520	mdanderson.org	37	chr11	62648706	62648706	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggaggagctgctgaagGtggcaggcagccccggctgg	18	11	0	1	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001012662	exon4	c.G517T	p.V173L	CTGAAGGTGGCAG		46	4	0.09	70	0	0				325	0	0				T	62648706	G	T	62648706	3	4	114	1	0	0	0	0	1	0	0	0	14681	1261	44	3	628	3	SLC3A2	11	62648706	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	15724301	62648706	72357810	39	8390											
ANKRD42	338699	mdanderson.org	37	chr11	82922394	82922394	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcattatgcagcttttcatGggcggcttggctgcttgcaa	12	9	1	0	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_182603	exon5	c.G424T	p.G142W	TTTCATGGGCGGC		55	4	0.07	114	0	0				8	0	0				T	82922394	G	T	82922394	3	4	114	1	0	0	0	0	1	0	0	0	664	1348	47	3	442	3	ANKRD42	11	82922394	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	20273688	82922394	52084122	40	8391											
GRM5	2915	broad.mit.edu	37	chr11	88742239	88742239	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaatgtctgatccctcttaCgcatctcttccttctttgtc	4	14	5	1	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	GRM5	.	.	.	.	CTCTTACGCATCT		204	6	0.03	426	0	0		414		0	0					T	88742239	C	T	88742239	3	4	114	1	0	0	0	0	1	0	0	0	6840	551	19	1		1	GRM5	11	88742239	Missense_Mutation	SNP	C	TCGA-XE-AANJ-01A-11D-A435-10	5819845	88742239	46264277	41	8392											
SIK3	23387	mdanderson.org	37	chr11	116718216	116718216	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attttccccatcctgaaactGctggctgcccatgagcgaag	9	13	0	2	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_025164	exon22	c.C3610T	p.Q1204X	GAAACTGCTGGCT		52	4	0.08	99	0	0				55	0	0				A	116718216	G	A	116718216	4	1	114	1	0	0	0	0	0	1	0	0	14373	1328	46	2	189	2	SIK3	11	116718216	Nonsense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	27975977	116718216	18288300	42	8393											
FBXL14	144699	broad.mit.edu	37	chr12	1703090	1703090	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaggtgcagcttggcctccAccccccgccacaccgacttg	10	19	0	0	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	FBXL14	NM_152441	exon1	c.T143G	p.V48G	GCCTCCACCCCCC		44	30	0.68	22	11	0.5		19		75	30	0.4				C	1703090	A	C	1703090	3	2	114	1	0	0	0	0	1	0	0	0	5742	159	6	4	1121	4	FBXL14	12	1703090	Missense_Mutation	SNP	A	TCGA-XE-AANJ-01A-11D-A435-10		1703090	132148805	43	8394											
HSD17B6	8630	mdanderson.org	37	chr12	57178677	57178677	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gggtgaaaatcagcatagttGaacctggctacttcagaacg	11	8	2	3	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_003725	exon4	c.G613T	p.E205X	ATAGTTGAACCTG		92	5	0.05	105	0	0				23	0	0				T	57178677	G	T	57178677	4	4	114	1	0	0	0	0	0	1	0	0	7427	1291	45	3	623	3	HSD17B6	12	57178677	Nonsense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	55475587	57178677	76673218	44	8395											
FOXN4	121643	ucsc.edu	37	chr12	109724470	109724470	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caccttgaagtaggggaagtGctccttcatgaagctgtaga	12	8	1	3	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	FOXN4	NM_213596	exon7	c.C676A	p.H226N	GGAAGTGCTCCTT		40	4	0.1	42	0	0		74		0	0					T	109724470	G	T	109724470	3	4	114	1	0	0	0	0	1	0	0	0	6055	1319	46	2	893	2	FOXN4	12	109724470	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	52545793	109724470	24127425	45	8396											
LATS2	26524	mdanderson.org	37	chr13	21563351	21563351	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcttgggccctcgtaggGggtaccgctcagctggtggt	17	10	1	0	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	LATS2_ENST00000382592,NS,carcinoma,+1,2	LATS2_ENST00000382592	NM_014572	exon4	c.C568A	p.P190T	CGTAGGGGGTACC		45	3	0.07	72	0	0		1	2	6	0	0				T	21563351	G	T	21563351	3	4	114	1	0	0	0	0	1	0	0	0	8685	1232	43	3	2718	3	LATS2	13	21563351	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10		21563351	93606527	46	8397											
ATP12A	479	mdanderson.org	37	chr13	25265283	25265283	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gtctccatcggcatccttttCttcatcatcgctgtgtccct	6	15	4	0	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001185085	exon8	c.C981T	p.F327F	CCTTTTCTTCATC		48	5	0.1	84	6	0.0714285714				47	1	0.02				T	25265283	C	T	25265283	2	4	114	1	0	0	0	0	0	0	0	1	1121	912	32	3		3	ATP12A	13	25265283	Silent	SNP	C	TCGA-XE-AANJ-01A-11D-A435-10	3701932	25265283	89904595	47	8398											
IRS2	8660	mdanderson.org	37	chr13	110436262	110436262	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtcctgcccgccgcagaGgtgggtgctggccccgcagg	16	14	0	1	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_003749	exon1	c.C2139A	p.T713T	CGCAGAGGTGGGT		43	3	0.07	44	0	0				1	0	0				T	110436262	G	T	110436262	2	4	114	1	0	0	0	0	0	0	0	1	7884	987	35	3		3	IRS2	13	110436262	Silent	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	85170979	110436262	4733616	48	8399											
ADPRHL1	113622	mdanderson.org	37	chr13	114083363	114083363	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccaggggctttccttgtgCggcgaacgacacaaacaggg	14	11	0	0	rs377658823		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_138430	exon4	c.G550A	p.A184T	CTTGTGCGGCGAA		37	3	0.08	62	0	0				7	0	0				T	114083363	C	T	114083363	3	4	114	1	0	0	0	0	1	0	0	0	331	768	27	1	530	1	ADPRHL1	13	114083363	Missense_Mutation	SNP	C	TCGA-XE-AANJ-01A-11D-A435-10	3647101	114083363	1086515	49	8400											
MLH3	27030	hgsc.bcm.edu	37	chr14	75514926	75514926	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cattttctccagcttctgatGctacaattgtctcttgttct	5	11	4	1	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_014381	exon2	c.C1433A	p.A478E	TCTGATGCTACAA		93	4	0.04	137	0	0				6	0	0				T	75514926	G	T	75514926	3	4	114	1	0	0	0	0	1	0	0	0	9665	1319	46	2	2976	2	MLH3	14	75514926	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10		75514926	31834614	50	8401											
FLVCR2	55640	mdanderson.org	37	chr14	76045333	76045333	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgatggtgaatgaaggtccCaaccaggaagagagcgatga	15	7	0	4	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_017791	exon1	c.C18A	p.P6P	AGGTCCCAACCAG		49	3	0.06	59	0	0				15	0	0				A	76045333	C	A	76045333	2	1	114	1	0	0	0	0	0	0	0	1	5978	581	21	3		3	FLVCR2	14	76045333	Silent	SNP	C	TCGA-XE-AANJ-01A-11D-A435-10	530407	76045333	31304207	51	8402											
PLCB2	5330	mdanderson.org	37	chr15	40580988	40580988	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagctctggggggcactcGcaggccctctcaggcttgtc	13	15	2	0	rs61755439	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_004573	exon32	c.C3486A	p.C1162X	GCACTCGCAGGCC		73	4	0.05	94	0	0				51	0	0				T	40580988	G	T	40580988	4	4	114	1	0	0	0	0	0	1	0	0	12075	1079	38	1	75	1	PLCB2	15	40580988	Nonsense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10		40580988	61950404	52	8403											
LMAN1L	79748	bcgsc.ca;mdanderson.org	37	chr15	75112999	75112999	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccccctcagcccttcctggaGatgcagcagctccgcctggc	10	19	1	1	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	LMAN1L	NM_021819	exon8	c.G798T	p.E266D	CCTGGAGATGCAG		75	5	0.07	67	0	0		43		0	0					T	75112999	G	T	75112999	3	4	114	1	0	0	0	0	1	0	0	0	8877	933	33	3	828	3	LMAN1L	15	75112999	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	34532011	75112999	27418393	53	8404											
FAHD1	81889	mdanderson.org	37	chr16	1877842	1877842	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccggttaaagaaaacgatgaGatcgaggctggcatacacgg	13	8	0	2	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_031208	exon1	c.G612T	p.E204D	CGATGAGATCGAG		107	5	0.05	164	0	0				56	0	0				T	1877842	G	T	1877842	3	4	114	1	0	0	0	0	1	0	0	0	5403	933	33	3	614	3	FAHD1	16	1877842	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10		1877842	88476911	54	8405											
FBXL19	54620	mdanderson.org	37	chr16	30939251	30939251	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaaacgaaaggaaagggaGgcagggaatgagcctcccac	13	11	0	1	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001099784	exon5	c.G654T	p.E218D	AAGGGAGGCAGGG		27	3	0.11	39	0	0				31	0	0				T	30939251	G	T	30939251	3	4	114	1	0	0	0	0	1	0	0	0	5747	991	35	3	672	3	FBXL19	16	30939251	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	29061409	30939251	59415502	55	8406											
ZNF646	9726	mdanderson.org	37	chr16	31088604	31088604	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagtcccatgagggtgaaaGgcaggagccacgctgggagg	18	9	0	2	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_014699	exon2	c.G959T	p.R320M	GTGAAAGGCAGGA		50	3	0.06	82	0	0				17	0	0				T	31088604	G	T	31088604	3	4	114	1	0	0	0	0	1	0	0	0	18118	1000	35	3	961	3	ZNF646	16	31088604	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	149353	31088604	59266149	56	8407											
NLE1	54475	mdanderson.org	37	chr17	33469134	33469134	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgcacatcgcgcgccaccGcctcgtcctgcgcgagcaag	12	18	0	0	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_018096	exon2	c.C26T	p.A9V	GCCACCGCCTCGT		27	3	0.11	54	0	0				9	0	0				A	33469134	G	A	33469134	3	1	114	1	0	0	0	0	1	0	0	0	10506	1087	38	1	1479	1	NLE1	17	33469134	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10		33469134	47726076	57	8408											
SRCIN1	80725	mdanderson.org	37	chr17	36714529	36714529	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcctcttccaccagggtgCgctgccgctgcagcgggtcc	13	16	1	0	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_025248	exon11	c.G2135A	p.R712H	AGGGTGCGCTGCC		26	2	0.08	51	1	0.0196078431				3	0	0				T	36714529	C	T	36714529	3	4	114	1	0	0	0	0	1	0	0	0	15191	768	27	1	1452	1	SRCIN1	17	36714529	Missense_Mutation	SNP	C	TCGA-XE-AANJ-01A-11D-A435-10	3245395	36714529	44480681	58	8409											
RPL19	6143	hgsc.bcm.edu	37	chr17	37360424	37360424	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agctgaaggcagacaaggccCgcaagaagctcctggcgtaa	13	11	0	3	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	RPL19,NS,carcinoma,-1,1	RPL19	NM_000981	exon5	c.C451T	p.R151C	AAGGCCCGCAAGA		31	2	0.06	27	1	0.037037037		-1	1	14796	15	0				T	37360424	C	T	37360424	3	4	114	1	0	0	0	0	1	0	0	0	13617	652	23	1	469	1	RPL19	17	37360424	Missense_Mutation	SNP	C	TCGA-XE-AANJ-01A-11D-A435-10	645895	37360424	43834786	59	8410											
KRT33A	3883	mdanderson.org	37	chr17	39507011	39507011	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctgggcaggccacaactGtaagacatggtgcagggagg	17	8	0	1	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_004138	exon1	c.C9A	p.Y3X	ACAACTGTAAGAC		44	3	0.07	53	0	0				0	0					T	39507011	G	T	39507011	4	4	114	1	0	0	0	0	0	1	0	0	8511	1372	48	3	1233	3	KRT33A	17	39507011	Nonsense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	2146587	39507011	41688199	60	8411											
ABCA9	10350	mdanderson.org	37	chr17	66992072	66992072	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agagagccaatcaatgtgaaGggaggtattaacatggtgcc	13	6	1	2	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	ABCA9,NS,malignant_melanoma,-2,2	ABCA9	NM_080283	exon26	c.C3519A	p.P1173P	TGTGAAGGGAGGT		56	3	0.05	43	0	0		-2	2	2	0	0				T	66992072	G	T	66992072	2	4	114	1	0	0	0	0	0	0	0	1	39	987	35	3		3	ABCA9	17	66992072	Silent	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	27485061	66992072	14203138	61	8412											
MAP2K2	5605	mdanderson.org	37	chr19	4110627	4110627	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggatgatctggttccggatGgccggcttgatctcaaggtg	15	9	2	2	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_030662	exon3	c.C330A	p.A110A	CCGGATGGCCGGC		46	3	0.07	50	0	0				622	0	0				T	4110627	G	T	4110627	2	4	114	1	0	0	0	0	0	0	0	1	9286	1335	47	3		3	MAP2K2	19	4110627	Silent	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10		4110627	55018356	62	8413											
LRG1	116844	mdanderson.org	37	chr19	4538473	4538473	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggggcagtttccggaggcGgttcccagacaggtccagat	17	10	0	2	rs200192398	by1000genomes;alternate_allele	TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	LRG1,colon,carcinoma,+1,1	LRG1	NM_052972	exon2	c.C523A	p.R175S	GGAGGCGGTTCCC		44	3	0.07	64	0	0		1	1	13	0	0				T	4538473	G	T	4538473	3	4	114	1	0	0	0	0	1	0	0	0	8986	1116	39	1	524	1	LRG1	19	4538473	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	427846	4538473	54590510	63	8414											
PLIN3	10226	hgsc.bcm.edu	37	chr19	4859920	4859920	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcactcccttctctgctgcGtcgcagacagtcttgatgtg	9	14	3	2	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	PLIN3,bladder,carcinoma,-2,1	PLIN3	NM_001164189	exon3	c.C183A	p.D61E	TGCTGCGTCGCAG		97	4	0.04	110	0	0		-2	1	178	0	0				T	4859920	G	T	4859920	3	4	114	1	0	0	0	0	1	0	0	0	12138	1136	40	1	1145	1	PLIN3	19	4859920	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	321447	4859920	54269063	64	8415											
ZNF564	163050	broad.mit.edu	37	chr19	12637879	12637879	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgttcgaacattactggaaGaactgaaggttttaccacat	9	7	0	2	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	ZNF564	NM_144976	exon4	c.C1043A	p.S348Y	CTGGAAGAACTGA		95	4	0.04	126	0	0		55		42	0	0				T	12637879	G	T	12637879	3	4	114	1	0	0	0	0	1	0	0	0	18051	942	33	3	622	3	ZNF564	19	12637879	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	7777959	12637879	46491104	65	8416											
ZNF676	163223	ucsc.edu	37	chr19	22363172	22363172	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgccacattcttcacatttGtagggtttctctccagcatg	7	11	3	0	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	ZNF676	NM_001001411	exon3	c.C1347T	p.Y449Y	ACATTTGTAGGGT		75	5	0.07	55	3	0.0545454545		146		125	16	0.13				A	22363172	G	A	22363172	2	1	114	1	0	0	0	0	0	0	0	1	18139	1372	48	3		3	ZNF676	19	22363172	Silent	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	9725293	22363172	36765811	66	8417											
MAG	4099	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr19	35790585	35790585	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tgggccacgaggggctggggGagcccgctgtgctgggccgg	22	11	0	0	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_080600	exon5	c.G544T	p.E182X	CTGGGGGAGCCCG		41	8	0.2	41	0	0				0	0					T	35790585	G	T	35790585	4	4	114	1	0	0	0	0	0	1	0	0	9207	1175	41	3	554	3	MAG	19	35790585	Nonsense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	13427413	35790585	23338398	67	8418											
RYR1	6261	mdanderson.org	37	chr19	38958374	38958374	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accacaggcgagatgcgcgtGggctgggcgaggcccgagct	18	12	0	1	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001042723	exon25	c.G3303T	p.V1101V	GCGCGTGGGCTGG		46	3	0.07	51	0	0				4	1	0.25				T	38958374	G	T	38958374	2	4	114	1	0	0	0	0	0	0	0	1	13819	1335	47	3		3	RYR1	19	38958374	Silent	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	3167789	38958374	20170609	68	8419											
LIPE	3991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	42912431	42912431	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccccgaaggacaccagcCcaatggagatggtctgcagg	13	13	1	1	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_005357	exon3	c.G1463T	p.G488V	ACCAGCCCAATGG		102	27	0.26	129	0	0				112	31	0.28				A	42912431	C	A	42912431	3	1	114	1	0	0	0	0	1	0	0	0	8861	623	22	3	1799	3	LIPE	19	42912431	Missense_Mutation	SNP	C	TCGA-XE-AANJ-01A-11D-A435-10	3954057	42912431	16216552	69	8420											
ZNF233	353355	ucsc.edu	37	chr19	44778238	44778238	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccatcagagaatccacacTggagagaaaccctacaaatg	8	12	1	2	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	ZNF233	NM_001207005	exon5	c.T1425C	p.T475T	CCACACTGGAGAG		82	1	0.01	72	0	0		73		29	5	0.17				C	44778238	T	C	44778238	2	2	114	1	0	0	0	0	0	0	0	1	17843	1567	55	4		4	ZNF233	19	44778238	Silent	SNP	T	TCGA-XE-AANJ-01A-11D-A435-10	1865807	44778238	14350745	70	8421											
ZNF671	79891	broad.mit.edu	37	chr19	58232944	58232944	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggtatctttcaatattggGccacatatgtcacatgggtg	10	7	3	0	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	ZNF671,NS,carcinoma,0,1	ZNF671	NM_024833	exon4	c.C510A	p.G170G	TATTGGGCCACAT		188	4	0.02	183	0	0		55	1	11	0	0				T	58232944	G	T	58232944	2	4	114	1	0	0	0	0	0	0	0	1	18134	1190	42	2		2	ZNF671	19	58232944	Silent	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	13454706	58232944	896039	71	8422											
UQCC	55245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr20	33891797	33891797	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	caggatgctctgaggattctTctccactagagggcgccagc	12	12	3	2	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	UQCC,NS,carcinoma,+1,1	UQCC	NM_018244	exon10	c.A841T	p.K281X	GATTCTTCTCCAC		135	30	0.22	156	0	0		1	1	57	15	0.26				A	33891797	T	A	33891797	4	1	114	1	0	0	0	0	0	1	0	0	17074	1792	62	5	62	5	UQCC	20	33891797	Nonsense_Mutation	SNP	T	TCGA-XE-AANJ-01A-11D-A435-10		33891797	29133723	72	8423											
DOPEY2	9980	broad.mit.edu	37	chr21	37609660	37609660	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgcactgcctggcccctaCggccaacatctgcgaggaca	11	16	1	0	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	DOPEY2,NS,carcinoma,0,1	DOPEY2	NM_005128	exon16	c.C2723T	p.T908M	CCCCTACGGCCAA		98	4	0.04	98	0	0		184	1	27	0	0				T	37609660	C	T	37609660	3	4	114	1	0	0	0	0	1	0	0	0	4735	536	19	1	2781	1	DOPEY2	21	37609660	Missense_Mutation	SNP	C	TCGA-XE-AANJ-01A-11D-A435-10		37609660	10520235	73	8424											
ITGB2	3689	mdanderson.org	37	chr21	46308741	46308741	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggttgttcgacagctgcagGcccggacacgccgcgctgca	15	14	0	0	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001127491	exon14	c.C1947A	p.G649G	CTGCAGGCCCGGA		38	3	0.08	33	0	0				617	0	0				T	46308741	G	T	46308741	2	4	114	1	0	0	0	0	0	0	0	1	7937	1190	42	2		2	ITGB2	21	46308741	Silent	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	8699081	46308741	1821154	74	8425											
IL17RA	23765	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	17589771	17589771	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caccgcgtaggggagctgtcGggggacaactacctgcggag	17	11	0	0	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	IL17RA	NM_014339	exon13	c.G1662A	p.S554S	GCTGTCGGGGGAC		60	11	0.18	66	1	0.0151515152		62		47	9	0.19				A	17589771	G	A	17589771	2	1	114	1	0	0	0	0	0	0	0	1	7682	1103	39	1		1	IL17RA	22	17589771	Silent	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10		17589771	33714795	75	8426											
CCDC157	550631	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr22	30771567	30771567	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgcagtccaacgacatccGcatccgggtcctacaggagg	12	13	0	0	rs368250287		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001017437	exon10	c.G1772A	p.R591H	ACATCCGCATCCG		97	5	0.05	107	0	0				19	0	0				A	30771567	G	A	30771567	3	1	114	1	0	0	0	0	1	0	0	0	2808	1087	38	1	1802	1	CCDC157	22	30771567	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	13181796	30771567	20532999	76	8427											
GGA1	26088	broad.mit.edu	37	chr22	38027039	38027039	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagagccccccaggcctccGcagcagcccgtaccaaccga	9	21	0	1	rs138927569	alternate_allele	TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	GGA1,NS,carcinoma,+1,1	GGA1	NM_013365	exon14	c.G1461T	p.P487P	GCCTCCGCAGCAG		111	5	0.05	120	0	0		39	1	309	0	0				T	38027039	G	T	38027039	2	4	114	1	0	0	0	0	0	0	0	1	6393	1074	38	1		1	GGA1	22	38027039	Silent	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	7255472	38027039	13277527	77	8428											
MKL1	57591	mdanderson.org	37	chr22	40815349	40815349	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agttttggtgcccgagacagGcagtgatcgcaacttcagct	12	10	1	2	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_020831	exon12	c.C1093A	p.P365T	AGACAGGCAGTGA		47	3	0.06	60	0	0				52	0	0				T	40815349	G	T	40815349	3	4	114	1	0	0	0	0	1	0	0	0	9648	1203	42	2	1718	2	MKL1	22	40815349	Missense_Mutation	SNP	G	TCGA-XE-AANJ-01A-11D-A435-10	2788310	40815349	10489217	78	8429											
AGRN	375790	mdanderson.org	37	chr1	955749	955749	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcagcacacgtactcctGcaaggtgcgcccacccggac	12	16	0	0	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_198576	exon1	c.G197T	p.C66F	ACTCCTGCAAGGT		25	3	0.12	47	0	0				4	0	0				T	955749	G	T	955749	3	4	115	1	0	0	0	0	1	0	0	0	394	1319	46	2	199	2	AGRN	1	955749	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10		955749	248294872	1	8430											
KIF1B	23095	broad.mit.edu;mdanderson.org	37	chr1	10355744	10355744	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaagcagatgctgagcggcGccaggacatagtgctgagcg	15	11	0	3	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	KIF1B	NM_183416	exon17	c.G1559A	p.R520H	AGCGGCGCCAGGA		66	4	0.06	105	0	0		242		2	0	0				A	10355744	G	A	10355744	3	1	115	1	0	0	0	0	1	0	0	0	8325	1087	38	1	1621	1	KIF1B	1	10355744	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	9399995	10355744	238894877	2	8431											
PADI3	51702	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	17607185	17607185	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagctgcatcgactggaaccGtgaggtgctgaagcgggagc	17	9	0	2	rs146338253	byfrequency;alternate_allele	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	PADI3,NS,carcinoma,+1,1	PADI3	NM_016233	exon15	c.G1655A	p.R552H	GGAACCGTGAGGT		92	9	0.1	124	0	0		1	1	0	0					A	17607185	G	A	17607185	3	1	115	1	0	0	0	0	1	0	0	0	11425	1145	40	1	1713	1	PADI3	1	17607185	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	7251441	17607185	231643436	3	8432											
PUM1	9698	mdanderson.org	37	chr1	31426815	31426815	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gagatgtatcttccactgccAttcgtgagtcctcctgttgg	10	11	1	2	rs2275741	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_014676	exon15	c.T2337A	p.N779K	ACTGCCATTCGTG		51	2	0.04	75	0	0				14	0	0				T	31426815	A	T	31426815	3	4	115	1	0	0	0	0	1	0	0	0	12876	214	8	5	1261	5	PUM1	1	31426815	Missense_Mutation	SNP	A	TCGA-XE-AANR-01A-11D-A435-10	13819630	31426815	217823806	4	8433											
MACF1	23499	broad.mit.edu	37	chr1	39801335	39801335	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaatgacctcaagtgaaaaAgggaaagaagctgatacaga	11	5	1	5	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	MACF1,NS,carcinoma,0,1	MACF1	.	.	.	.	TGAAAAAGGGAAA		211	6	0.03	284	0	0		909	1	0	0					G	39801335	A	G	39801335	2	3	115	1	0	0	0	0	0	0	0	1	9189	69	3	4		4	MACF1	1	39801335	Silent	SNP	A	TCGA-XE-AANR-01A-11D-A435-10	8374520	39801335	209449286	5	8434											
COL9A2	1298	mdanderson.org	37	chr1	40775830	40775830	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	caccatgcctttatatccatGagggccctggggagaggaaa	12	10	0	2	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001852	exon15	c.C745A	p.H249N	ATCCATGAGGGCC		28	3	0.11	52	0	0				3	0	0				T	40775830	G	T	40775830	3	4	115	1	0	0	0	0	1	0	0	0	3731	1290	45	3	1396	3	COL9A2	1	40775830	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	974495	40775830	208474791	6	8435											
NRD1	4898	bcgsc.ca	37	chr1	52255291	52255291	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctatgggccttgaaccagttGaccaggtctgattttgagaa	11	8	1	4	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	NRD1	NM_002525	exon32	c.C3411A	p.V1137V	CCAGTTGACCAGG		47	4	0.09	81	0	0		89		215	0	0				T	52255291	G	T	52255291	2	4	115	1	0	0	0	0	0	0	0	1	10692	1277	45	3		3	NRD1	1	52255291	Silent	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	11479461	52255291	196995330	7	8436											
DOCK7	85440	mdanderson.org	37	chr1	62970399	62970399	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctacagtgtcggagaagccTgaggcataaatcagcacact	11	10	1	2	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001271999	exon37	c.A4639G	p.R1547G	GAAGCCTGAGGCA		45	3	0.07	76	1	0.0131578947				14	0	0				C	62970399	T	C	62970399	3	2	115	1	0	0	0	0	1	0	0	0	4719	1579	55	4	1812	4	DOCK7	1	62970399	Missense_Mutation	SNP	T	TCGA-XE-AANR-01A-11D-A435-10	10715108	62970399	186280222	8	8437											
ADAMTSL4	54507	mdanderson.org	37	chr1	150530476	150530476	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgtggccccggcacccagCaccgccagctgcagtgccgg	13	19	0	0	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_019032	exon14	c.C2233T	p.H745Y	ACCCAGCACCGCC		43	3	0.07	47	0	0				13	0	0				T	150530476	C	T	150530476	3	4	115	1	0	0	0	0	1	0	0	0	276	710	25	2	2279	2	ADAMTSL4	1	150530476	Missense_Mutation	SNP	C	TCGA-XE-AANR-01A-11D-A435-10	87560077	150530476	98720145	9	8438											
NBAS	51594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	15557681	15557681	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtaatcttagtttttcaatGtctttcatctgctggagttc	7	7	5	0	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_015909	exon24	c.C2733T	p.D911D	TTCAATGTCTTTC		260	59	0.23	262	0	0				15	2	0.13				A	15557681	G	A	15557681	2	1	115	1	0	0	0	0	0	0	0	1	10233	1368	48	3		3	NBAS	2	15557681	Silent	SNP	G	TCGA-XE-AANR-01A-11D-A435-10		15557681	227641692	10	8439											
CMTM8	152189	broad.mit.edu	37	chr3	32280541	32280541	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cgcagagaacttctccaccaGcagcagcagcttcgcctacg	9	16	1	1	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	CMTM8	NM_178868	exon1	c.G77C	p.S26T	CCACCAGCAGCAG		178	4	0.02	260	0	0		9		2	0	0				C	32280541	G	C	32280541	3	2	115	1	0	0	0	0	1	0	0	0	3612	971	34	5	79	5	CMTM8	3	32280541	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10		32280541	165741889	11	8440											
SH3BP2	6452	mdanderson.org	37	chr4	2826352	2826352	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccccagggtgatgcgggcGgctgaggagaccacgtccaa	16	13	0	3	rs149515000	alternate_allele	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001145856	exon4	c.G423T	p.A141A	GCGGGCGGCTGAG		42	3	0.07	48	0	0				5	0	0				T	2826352	G	T	2826352	2	4	115	1	0	0	0	0	0	0	0	1	14298	1103	39	1		1	SH3BP2	4	2826352	Silent	SNP	G	TCGA-XE-AANR-01A-11D-A435-10		2826352	188327924	12	8441											
MFSD10	10227	mdanderson.org	37	chr4	2933865	2933865	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agccgcatcacggaaccccaGggcgatagagggcgcctgtg	15	13	1	1	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001146069	exon7	c.C709A	p.L237M	ACCCCAGGGCGAT		10	2	0.2	31	0	0				27	0	0				T	2933865	G	T	2933865	3	4	115	1	0	0	0	0	1	0	0	0	9577	991	35	3	686	3	MFSD10	4	2933865	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	107513	2933865	188220411	13	8442											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	55599321	55599321	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgattttggtctagccagagAcatcaagaatgattctaatt	8	6	3	4	rs121913507	bycluster	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	KIT,colon,carcinoma,+1,932	KIT	NM_000222	exon17	c.A2447T	p.D816V	CCAGAGACATCAA		61	36	0.59	96	0	0		1	932	50	50	1				T	55599321	A	T	55599321	3	4	115	1	0	0	0	0	1	0	0	0	8371	275	10	5	2513	5	KIT	4	55599321	Missense_Mutation	SNP	A	TCGA-XE-AANR-01A-11D-A435-10	52665456	55599321	135554955	14	8443											
DMP1	1758	mdanderson.org	37	chr4	88583550	88583550	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagagcagccatggagacgGctccgagttggacgatgagg	18	8	0	3	rs200520896	by1000genomes	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_004407	exon6	c.G620A	p.G207D	GAGACGGCTCCGA		33	3	0.09	60	0	0	0			0	0					A	88583550	G	A	88583550	3	1	115	1	0	0	0	0	1	0	0	0	4611	1203	42	2	638	2	DMP1	4	88583550	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	32984229	88583550	102570726	15	8444											
SPCS3	60559	broad.mit.edu	37	chr4	177248366	177248366	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gttttgagaggtgataatccGaagctgctgctgaaagatat	12	5	0	4	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	SPCS3	NM_021928	exon4	c.G348A	p.P116P	TAATCCGAAGCTG		298	6	0.02	474	0	0		15		18	0	0				A	177248366	G	A	177248366	2	1	115	1	0	0	0	0	0	0	0	1	15080	1045	37	1		1	SPCS3	4	177248366	Silent	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	88664816	177248366	13905910	16	8445											
GRIA1	2890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	153149891	153149891	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatgagtacattgagcagcGgaaaccctgtgacaccatga	11	9	0	4	rs370642711		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	GRIA1_ENST00000544403,NS,carcinoma,0,3	GRIA1_ENST00000544403	NM_001258021	exon13	c.G2216A	p.R739Q	AGCAGCGGAAACC		147	36	0.24	198	1	0.0050505051		0	3	0	0					A	153149891	G	A	153149891	3	1	115	1	0	0	0	0	1	0	0	0	6807	1116	39	1	2236	1	GRIA1	5	153149891	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10		153149891	27765369	17	8446											
PANK3	79646	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	167995711	167995711	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagcacatagcaccgtctgCaatgttgagaagtttttatc	9	8	1	1	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	PANK3	NM_024594	exon2	c.G321A	p.L107L	CGTCTGCAATGTT		75	5	0.07	88	0	0		39		8	0	0				T	167995711	C	T	167995711	2	4	115	1	0	0	0	0	0	0	0	1	11464	709	25	2		2	PANK3	5	167995711	Silent	SNP	C	TCGA-XE-AANR-01A-11D-A435-10	14845820	167995711	12919549	18	8447											
DNAH8	1769	mdanderson.org	37	chr6	38881682	38881682	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taaactctctcaggatcttgCagtcaaggagaaggagttgg	12	7	4	1	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001206927	exon67	c.C9917T	p.A3306V	ATCTTGCAGTCAA		116	5	0.04	150	1	0.0066666667				0	0					T	38881682	C	T	38881682	3	4	115	1	0	0	0	0	1	0	0	0	4634	710	25	2	9516	2	DNAH8	6	38881682	Missense_Mutation	SNP	C	TCGA-XE-AANR-01A-11D-A435-10		38881682	132233385	19	8448											
GPR22	2845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	107115390	107115390	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgtaataattgccctccgGcgagctgtgaaacgacaccg	10	12	1	1	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_005295	exon3	c.G885A	p.R295R	CCTCCGGCGAGCT		303	59	0.19	215	0	0				0	0					A	107115390	G	A	107115390	2	1	115	1	0	0	0	0	0	0	0	1	6721	1190	42	2		2	GPR22	7	107115390	Silent	SNP	G	TCGA-XE-AANR-01A-11D-A435-10		107115390	52023273	20	8449											
C7orf60	154743	broad.mit.edu	37	chr7	112462251	112462251	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcttgcagcaaatccatcGctggtaaggagatggaaaat	10	7	1	1	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	C7orf60,NS,carcinoma,0,1	C7orf60	NM_152556	exon5	c.C766A	p.R256R	TCCATCGCTGGTA		115	3	0.03	91	0	0		55	1	14	0	0				T	112462251	G	T	112462251	2	4	115	1	0	0	0	0	0	0	0	1	2423	1095	38	1		1	C7orf60	7	112462251	Silent	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	5346861	112462251	46676412	21	8450											
AQP7	364	bcgsc.ca	37	chr9	33385733	33385733	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgatggcatatcctgtgttCatgccaagggacaccccgat	10	11	1	1	rs201117022	bycluster	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	AQP7,head_neck,carcinoma,0,1	AQP7	NM_001170	exon7	c.G657A	p.M219I	TGTGTTCATGCCA		42	10	0.24	38	1	0.0263157895		58	1	2	0	0				T	33385733	C	T	33385733	3	4	115	1	0	0	0	0	1	0	0	0	828	826	29	3	379	3	AQP7	9	33385733	Missense_Mutation	SNP	C	TCGA-XE-AANR-01A-11D-A435-10		33385733	107827698	22	8451											
SLC34A3	142680	mdanderson.org	37	chr9	140128577	140128577	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggccgccacctgtttgcGggcacggagctcacggacct	13	16	1	0	rs34664302	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_080877	exon10	c.G942T	p.A314A	GTTTGCGGGCACG		17	2	0.12	16	0	0				0	0					T	140128577	G	T	140128577	2	4	115	1	0	0	0	0	0	0	0	1	14623	1103	39	1		1	SLC34A3	9	140128577	Silent	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	106742844	140128577	1084854	23	8452											
ZNF503	84858	mdanderson.org	37	chr10	77159069	77159069	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtatccggacttcagcgccGcagccgcagcagccggatca	13	15	2	0	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_032772	exon2	c.C1379A	p.A460E	AGCGCCGCAGCCG		26	3	0.12	24	0	0				1	0	0				T	77159069	G	T	77159069	3	4	115	1	0	0	0	0	1	0	0	0	18007	1087	38	1	565	1	ZNF503	10	77159069	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10		77159069	58375678	24	8453											
DLG5	9231	mdanderson.org	37	chr10	79579175	79579175	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtgtagatggggttccgcAggatggagctcacagtggtg	17	7	1	1	rs142466775	bycluster;byfrequency	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_004747	exon17	c.T3575C	p.L1192P	TTCCGCAGGATGG		38	3	0.08	57	0	0	0			36	0	0				G	79579175	A	G	79579175	3	3	115	1	0	0	0	0	1	0	0	0	4586	188	7	4	2248	4	DLG5	10	79579175	Missense_Mutation	SNP	A	TCGA-XE-AANR-01A-11D-A435-10	2420106	79579175	55955572	25	8454											
MUC2	4583	mdanderson.org	37	chr11	1093210	1093210	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cacagtccccaaccccaacaGccatcaccaccaccactacg	3	22	1	0	rs56396523	bycluster	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_002457	exon30	c.G5029C	p.A1677P	CCAACAGCCATCA		16	5	0.31	22	5	0.2272727273				0	0					C	1093210	G	C	1093210	3	2	115	1	0	0	0	0	1	0	0	0	10022	971	34	5	5147	5	MUC2	11	1093210	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10		1093210	133913306	26	8455											
MUC2	4583	hgsc.bcm.edu	37	chr11	1093420	1093420	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agaccccaaccacgacacccAtcaccaccaccaccacggtg	5	21	1	1	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	MUC2_ENST00000441003,NS,carcinoma,-2,2	MUC2_ENST00000441003	NM_002457	exon30	c.A5239G	p.I1747V	ACACCCATCACCA		35	2	0.06	51	2	0.0392156863		-2	2	0	0					G	1093420	A	G	1093420	3	3	115	1	0	0	0	0	1	0	0	0	10022	217	8	4	5357	4	MUC2	11	1093420	Missense_Mutation	SNP	A	TCGA-XE-AANR-01A-11D-A435-10	210	1093420	133913096	27	8456											
FAR1	84188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	13743357	13743357	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taattcttgggtttggaataCtgagaatgtcaatatgttaa	9	3	2	1	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_032228	exon10	c.C1208T	p.T403I	GGAATACTGAGAA		105	35	0.33	185	0	0				2	1	0.5				T	13743357	C	T	13743357	3	4	115	1	0	0	0	0	1	0	0	0	5706	565	20	3	1242	3	FAR1	11	13743357	Missense_Mutation	SNP	C	TCGA-XE-AANR-01A-11D-A435-10	12649937	13743357	121263159	28	8457											
RNF169	254225	mdanderson.org	37	chr11	74521243	74521243	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttagctgagagaagaaaaGttacaagaggaaaaaccctc	9	6	0	4	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001098638	exon3	c.G591T	p.K197N	AGAAAAGTTACAA		53	3	0.06	69	0	0				0	0					T	74521243	G	T	74521243	3	4	115	1	0	0	0	0	1	0	0	0	13511	1020	36	3	601	3	RNF169	11	74521243	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	60777886	74521243	60485273	29	8458											
CEP164	22897	mdanderson.org	37	chr11	117263830	117263830	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atggctaaggccagagagcaGtatgaagctgaggtagctca	14	7	1	3	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001271933	exon19	c.G2613T	p.Q871H	AGAGCAGTATGAA		34	3	0.09	54	0	0				15	0	0				T	117263830	G	T	117263830	3	4	115	1	0	0	0	0	1	0	0	0	3271	1020	36	3	2674	3	CEP164	11	117263830	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	42742587	117263830	17742686	30	8459											
TUBA1A	7846	bcgsc.ca	37	chr12	49580192	49580192	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatcttctttgcctgtgatAagttgctcagggtggaagag	13	7	3	2	rs16918521	byfrequency	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	TUBA1A	NM_001270399	exon3	c.T276C	p.L92L	TGTGATAAGTTGC		140	12	0.09	185	6	0.0324324324		32		756	5	0.01				G	49580192	A	G	49580192	3	3	115	1	0	0	0	0	1	0	0	0	16804	349	13	4	1087	4	TUBA1A	12	49580192	Missense_Mutation	SNP	A	TCGA-XE-AANR-01A-11D-A435-10		49580192	84271703	31	8460											
LRP1	4035	mdanderson.org	37	chr12	57588470	57588470	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	actgtgaacatggcgaggacGagacccactgcagtgagtga	14	9	0	4	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_002332	exon50	c.G8179T	p.E2727X	GAGGACGAGACCC		34	3	0.09	40	0	0				19	0	0				T	57588470	G	T	57588470	4	4	115	1	0	0	0	0	0	1	0	0	8995	1059	37	1	8377	1	LRP1	12	57588470	Nonsense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	8008278	57588470	76263425	32	8461											
P2RX7	5027	bcgsc.ca;mdanderson.org	37	chr12	121605293	121605293	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccttgttgatccttcagggCggaataatgggcattgagat	12	8	1	2	rs147505804	bycluster	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	P2RX7	NM_002562	exon8	c.C747T	p.G249G	TCAGGGCGGAATA		82	5	0.06	90	0	0		53		0	0					T	121605293	C	T	121605293	2	4	115	1	0	0	0	0	0	0	0	1	11391	755	27	1		1	P2RX7	12	121605293	Silent	SNP	C	TCGA-XE-AANR-01A-11D-A435-10	64016823	121605293	12246602	33	8462											
LATS2	26524	mdanderson.org	37	chr13	21562308	21562308	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctctgctccatgcctgcGcacaggctgtccaggtcgta	12	14	1	0	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_014572	exon4	c.C1611A	p.C537X	GCCTGCGCACAGG		41	3	0.07	55	0	0				4	0	0				T	21562308	G	T	21562308	4	4	115	1	0	0	0	0	0	1	0	0	8685	1079	38	1	1675	1	LATS2	13	21562308	Nonsense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10		21562308	93607570	34	8463											
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	95858899	95858899	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcactgccacgaacacgcGgctggctgtgatcacactgc	11	15	2	1	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_005845	exon8	c.C1048A	p.R350S	ACACGCGGCTGGC		94	30	0.32	106	0	0				11	5	0.45				T	95858899	G	T	95858899	3	4	115	1	0	0	0	0	1	0	0	0	55	1116	39	1	3074	1	ABCC4	13	95858899	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	74296591	95858899	19310979	35	8464											
UPF3A	65110	mdanderson.org	37	chr13	115051797	115051797	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctagaatatcctgcagtgGtagagtttgctccattccag	10	10	0	2	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_023011	exon4	c.G442T	p.V148L	GCAGTGGTAGAGT		75	4	0.05	119	0	0				17	0	0				T	115051797	G	T	115051797	3	4	115	1	0	0	0	0	1	0	0	0	17064	1261	44	3	456	3	UPF3A	13	115051797	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	19192898	115051797	118081	36	8465											
NPAS3	64067	mdanderson.org	37	chr14	34269689	34269689	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggcgccgacggcgcggccGcccgcaagactcagttcggc	15	18	1	1	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001164749	exon12	c.G2176A	p.A726T	GCGGCCGCCCGCA		39	3	0.08	32	0	0				0	0					A	34269689	G	A	34269689	3	1	115	1	0	0	0	0	1	0	0	0	10610	1087	38	1	2277	1	NPAS3	14	34269689	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10		34269689	73079851	37	8466											
GPR135	64582	mdanderson.org	37	chr14	59930940	59930940	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cagatgacgaagacgatcatGatgaggacggtggtggccgt	16	7	1	5	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_022571	exon1	c.C1005A	p.I335I	GATCATGATGAGG		32	3	0.09	28	0	0				0	0					T	59930940	G	T	59930940	2	4	115	1	0	0	0	0	0	0	0	1	6683	1280	45	3		3	GPR135	14	59930940	Silent	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	25661251	59930940	47418600	38	8467											
UBR1	197131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	43335557	43335557	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actgcacctcatcacagcttTgtgacattctttataagcca	5	12	3	1	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_174916	exon15	c.A1705G	p.K569E	CAGCTTTGTGACA		170	33	0.19	155	0	0				6	1	0.17				C	43335557	T	C	43335557	3	2	115	1	0	0	0	0	1	0	0	0	16961	1821	63	4	3676	4	UBR1	15	43335557	Missense_Mutation	SNP	T	TCGA-XE-AANR-01A-11D-A435-10		43335557	59195835	39	8468											
MYH11	4629	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr16	15869978	15869978	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaatcatgtagtaaaagatGtggaatgtcctctcgtctct	9	8	3	1	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001040114	exon9	c.C867A	p.H289Q	AAAGATGTGGAAT		96	5	0.05	146	0	0				14	0	0				T	15869978	G	T	15869978	3	4	115	1	0	0	0	0	1	0	0	0	10078	1368	48	3	5243	3	MYH11	16	15869978	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10		15869978	74484775	40	8469											
TCF25	22980	mdanderson.org	37	chr16	89965261	89965261	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaactacgagtacctgatccGcctcttccaggagtgggagg	13	11	1	1	rs139981645	bycluster	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_014972	exon11	c.G1202A	p.R401H	TGATCCGCCTCTT		39	3	0.08	41	0	0	0			105	0	0				A	89965261	G	A	89965261	3	1	115	1	0	0	0	0	1	0	0	0	15752	1087	38	1	1244	1	TCF25	16	89965261	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	74095283	89965261	389492	41	8470											
SPAG5	10615	mdanderson.org	37	chr17	26905514	26905514	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctccgcacgccgaagtgaGcgggtaaggtgggtcacctc	15	12	2	1	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_006461	exon21	c.C3231A	p.R1077R	AAGTGAGCGGGTA		42	3	0.07	47	0	0				142	1	0.01				T	26905514	G	T	26905514	2	4	115	1	0	0	0	0	0	0	0	1	15036	958	34	2		2	SPAG5	17	26905514	Silent	SNP	G	TCGA-XE-AANR-01A-11D-A435-10		26905514	54289696	42	8471											
ZPBP2	124626	mdanderson.org	37	chr17	38028693	38028693	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	catataaatgccattctgttGaaattccagaacatggcctc	6	10	1	2	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	ZPBP2,NS,carcinoma,0,1	ZPBP2	NM_199321	exon5	c.G577T	p.E193X	TCTGTTGAAATTC		91	5	0.05	102	0	0		0	1	0	0					T	38028693	G	T	38028693	4	4	115	1	0	0	0	0	0	1	0	0	18261	1291	45	3	595	3	ZPBP2	17	38028693	Nonsense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	11123179	38028693	43166517	43	8472											
CASC3	22794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	38318013	38318013	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacttttttcagggtgaagAaggtgaatacagtgaagagg	13	3	1	5	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	CASC3,NS,carcinoma,+1,1	CASC3	NM_007359	exon4	c.A305G	p.E102G	GTGAAGAAGGTGA		141	27	0.19	164	0	0		1	1	56	19	0.34				G	38318013	A	G	38318013	3	3	115	1	0	0	0	0	1	0	0	0	2679	246	9	4	319	4	CASC3	17	38318013	Missense_Mutation	SNP	A	TCGA-XE-AANR-01A-11D-A435-10	289320	38318013	42877197	44	8473											
KCNH6	81033	hgsc.bcm.edu	37	chr17	61622539	61622539	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acattctggaagcccctgccTccaatgacctggccttggtt	9	14	1	1	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_030779	exon13	c.T2605C	p.S869P	CCTGCCTCCAATG		99	5	0.05	67	0	0				9	0	0				C	61622539	T	C	61622539	3	2	115	1	0	0	0	0	1	0	0	0	8079	1551	54	4	2655	4	KCNH6	17	61622539	Missense_Mutation	SNP	T	TCGA-XE-AANR-01A-11D-A435-10	23304526	61622539	19572671	45	8474											
PRKCSH	5589	mdanderson.org	37	chr19	11546995	11546995	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggccgtggaggtcaagagGccccggggcgtctccctcac	16	14	3	1	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001001329	exon2	c.G57T	p.R19S	CAAGAGGCCCCGG		43	3	0.07	33	0	0				382	1	0				T	11546995	G	T	11546995	3	4	115	1	0	0	0	0	1	0	0	0	12567	1194	42	2	59	2	PRKCSH	19	11546995	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10		11546995	47581988	46	8475											
CAPNS1	826	bcgsc.ca	37	chr19	36632054	36632054	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcggcggcggcggcggCggtggtggaggcggcggtgg	28	9	0	0	rs17879825		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	CAPNS1	NM_001749	exon2	c.C141T	p.G47G	CGGCGGCGGTGGT		118	8	0.07	150	4	0.0266666667		19		0	0					T	36632054	C	T	36632054	2	4	115	1	0	0	0	0	0	0	0	1	2651	755	27	1		1	CAPNS1	19	36632054	Silent	SNP	C	TCGA-XE-AANR-01A-11D-A435-10	25085059	36632054	22496929	47	8476											
DMRTC2	63946	mdanderson.org	37	chr19	42352958	42352958	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgggtccctggacactgGctgcctccaggcttctccat	10	16	1	0	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001040283	exon5	c.G543A	p.W181X	ACACTGGCTGCCT		47	3	0.06	63	0	0				0	0					A	42352958	G	A	42352958	4	1	115	1	0	0	0	0	0	1	0	0	4619	1212	42	2	557	2	DMRTC2	19	42352958	Nonsense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	5720904	42352958	16776025	48	8477											
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	42874860	42874860	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cttccttggccagattgaaaActgggtgacagagggtccta	12	9	0	4	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001271938	exon40	c.A7013T	p.N2338I	TTGAAAACTGGGT		84	21	0.25	97	0	0				9	3	0.33				T	42874860	A	T	42874860	3	4	115	1	0	0	0	0	1	0	0	0	9512	43	2	5	6966	5	MEGF8	19	42874860	Missense_Mutation	SNP	A	TCGA-XE-AANR-01A-11D-A435-10	521902	42874860	16254123	49	8478											
DHX34	9704	mdanderson.org	37	chr19	47876120	47876120	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcgcggcagcacggcggccGctggagagcgaccagggtga	19	12	0	2	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_014681	exon8	c.G1902A	p.P634P	GCGGCCGCTGGAG		42	3	0.07	50	0	0				23	0	0				A	47876120	G	A	47876120	2	1	115	1	0	0	0	0	0	0	0	1	4535	1074	38	1		1	DHX34	19	47876120	Silent	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	5001260	47876120	11252863	50	8479											
GLTSCR2	29997	mdanderson.org	37	chr19	48258024	48258024	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagtcggatggtgagggggAgccaggccagggcgaggggc	24	7	0	1	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_015710	exon8	c.A929G	p.E310G	AGGGGGAGCCAGG		23	3	0.13	35	0	0				1334	1	0				G	48258024	A	G	48258024	3	3	115	1	0	0	0	0	1	0	0	0	6516	304	11	4	959	4	GLTSCR2	19	48258024	Missense_Mutation	SNP	A	TCGA-XE-AANR-01A-11D-A435-10	381904	48258024	10870959	51	8480											
SHANK1	50944	mdanderson.org	37	chr19	51171612	51171612	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcacgggtgacatggccGgggcggggctgggcgaggag	25	8	0	1	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_016148	exon22	c.C3605A	p.P1202Q	ATGGCCGGGGCGG		13	2	0.15	13	0	0				0	0					T	51171612	G	T	51171612	3	4	115	1	0	0	0	0	1	0	0	0	14318	1116	39	1	2888	1	SHANK1	19	51171612	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	2913588	51171612	7957371	52	8481											
RRBP1	6238	broad.mit.edu	37	chr20	17617269	17617269	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgtgctcccggtagctggCctgcatgcgtgcctgcacag	13	15	0	0	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	RRBP1	NM_004587	exon6	c.G991A	p.A331T	AGCTGGCCTGCAT		52	4	0.08	42	0	0		157		143	0	0				T	17617269	C	T	17617269	3	4	115	1	0	0	0	0	1	0	0	0	13729	739	26	2	2022	2	RRBP1	20	17617269	Missense_Mutation	SNP	C	TCGA-XE-AANR-01A-11D-A435-10		17617269	45408251	53	8482											
BMP7	655	mdanderson.org	37	chr20	55841035	55841035	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatctcccgccgctcctgGctgcggaggcgccggtggat	15	15	1	0	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001719	exon1	c.C144A	p.S48R	CTCCTGGCTGCGG		33	3	0.09	34	0	0				1	0	0				T	55841035	G	T	55841035	3	4	115	1	0	0	0	0	1	0	0	0	1464	1194	42	2	1179	2	BMP7	20	55841035	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	38223766	55841035	7184485	54	8483											
LAMA5	3911	mdanderson.org	37	chr20	60898602	60898602	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtggcgcaggcagccacGgcaggcgcccgtcagggggt	20	12	1	0	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_005560	exon45	c.C5974A	p.R1992S	AGCCACGGCAGGC		45	3	0.07	54	0	0				13	0	0				T	60898602	G	T	60898602	3	4	115	1	0	0	0	0	1	0	0	0	8647	1116	39	1	5257	1	LAMA5	20	60898602	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	5057567	60898602	2126918	55	8484											
TNFRSF6B	8771	mdanderson.org	37	chr20	62328205	62328205	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccggtgccggctgtacgcGgagtggcagaaacacccacc	14	14	0	1	rs61760055	bycluster	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_003823	exon1	c.G85A	p.G29R	GTACGCGGAGTGG		71	5	0.07	49	0	0				10	0	0				A	62328205	G	A	62328205	3	1	115	1	0	0	0	0	1	0	0	0	16357	1117	39	1	87	1	TNFRSF6B	20	62328205	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	1429603	62328205	697315	56	8485											
SNAP29	9342	bcgsc.ca	37	chr22	21242096	21242096	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttagatgtcaacataaaaaGcacagaaagaaaagttcgac	8	6	1	3	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	SNAP29	NM_004782	exon5	c.G749T	p.S250I	TAAAAAGCACAGA		49	4	0.08	70	0	0		22		73	0	0				T	21242096	G	T	21242096	3	4	115	1	0	0	0	0	1	0	0	0	14884	971	34	2	767	2	SNAP29	22	21242096	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10		21242096	30062470	57	8486											
GGT5	2687	mdanderson.org	37	chr22	24628058	24628058	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caccagcatctggcccagccTccccgtgtagaagacctcca	8	18	1	2	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001099781	exon5	c.A715G	p.R239G	CCAGCCTCCCCGT		39	3	0.08	88	1	0.0113636364				18	0	0				C	24628058	T	C	24628058	3	2	115	1	0	0	0	0	1	0	0	0	6403	1550	54	4	1080	4	GGT5	22	24628058	Missense_Mutation	SNP	T	TCGA-XE-AANR-01A-11D-A435-10	3385962	24628058	26676508	58	8487											
RNF215	200312	mdanderson.org	37	chr22	30775729	30775729	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaatttgcacagtgggcagGtctgctggagcatcagccag	14	9	2	1	rs149275092	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001017981	exon8	c.C1082A	p.T361N	GGGCAGGTCTGCT		53	3	0.06	72	0	0				26	0	0				T	30775729	G	T	30775729	3	4	115	1	0	0	0	0	1	0	0	0	13530	1261	44	3	59	3	RNF215	22	30775729	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	6147671	30775729	20528837	59	8488											
GPM6B	2824	mdanderson.org	37	chrX	13825789	13825789	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggactgctcaaggggctaGccctgtcccccagggttggc	14	14	1	0	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001001996	exon2	c.C161A	p.A54D	GGGCTAGCCCTGT		117	5	0.04	107	0	0				0	0					T	13825789	G	T	13825789	3	4	115	1	0	0	0	0	1	0	0	0	6655	971	34	2	938	2	GPM6B	23	13825789	Missense_Mutation	SNP	G	TCGA-XE-AANR-01A-11D-A435-10		13825789	141444771	60	8489											
DLG3	1741	broad.mit.edu	37	chrX	69713237	69713237	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ctttcacagtcgatcaaaacGaaacgtaaaaagagtttccg	7	9	2	1	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	DLG3	NM_020730	exon7	c.G774T	p.T258T	CAAAACGAAACGT		290	4	0.01	252	0	0		100		76	0	0				T	69713237	G	T	69713237	2	4	115	1	0	0	0	0	0	0	0	1	4584	1045	37	1		1	DLG3	23	69713237	Silent	SNP	G	TCGA-XE-AANR-01A-11D-A435-10	55887448	69713237	85557323	61	8490											
DPYD	1806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	97839132	97839132	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttacctgcccacaggccagGcccattcctctttctcccat	5	19	2	0	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_000110	exon16	c.C2043A	p.G681G	GGCCAGGCCCATT		202	32	0.16	262	0	0				2	0	0				T	97839132	G	T	97839132	2	4	116	1	0	0	0	0	0	0	0	1	4771	1190	42	2		2	DPYD	1	97839132	Silent	SNP	G	TCGA-XE-AANV-01A-11D-A435-10		97839132	151411489	1	8491											
CELF3	11189	mdanderson.org	37	chr1	151679994	151679994	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccatacctgaggatgggGtgatgggggtggcgatgagg	21	5	0	3	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_007185	exon7	c.C761A	p.T254N	GATGGGGTGATGG		19	2	0.11	28	0	0				0	0					T	151679994	G	T	151679994	3	4	116	1	0	0	0	0	1	0	0	0	3239	1261	44	3	660	3	CELF3	1	151679994	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10	53840862	151679994	97570627	2	8492											
SLAMF1	6504	broad.mit.edu	37	chr1	160604502	160604502	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagatattgtcagcatgctGggggccgagggtgagggaca	18	6	1	2	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	SLAMF1	NM_003037	exon3	c.C601A	p.Q201K	CATGCTGGGGGCC		159	4	0.03	193	0	0		74		17	0	0				T	160604502	G	T	160604502	3	4	116	1	0	0	0	0	1	0	0	0	14421	1357	47	3	426	3	SLAMF1	1	160604502	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10	8924508	160604502	88646119	3	8493											
EFCAB2	84288	mdanderson.org	37	chr1	245245457	245245457	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgatgacagaaatactactaGaaagaaagtaagtaagtaaa	8	3	0	5	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_032328	exon5	c.G256T	p.E86X	CTACTAGAAAGAA		25	3	0.12	34	0	0				7	0	0				T	245245457	G	T	245245457	4	4	116	1	0	0	0	0	0	1	0	0	4960	943	33	3	270	3	EFCAB2	1	245245457	Nonsense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10	84640955	245245457	4005164	4	8494											
OR2T34	127068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	248737452	248737452	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gatgcagcacaggtacgtgaGcatcttatagagggagacgt	14	7	1	3	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001001821	exon1	c.C607G	p.L203V	ACGTGAGCATCTT		356	59	0.17	391	0	0				0	0					C	248737452	G	C	248737452	3	2	116	1	0	0	0	0	1	0	0	0	11072	971	34	5	353	5	OR2T34	1	248737452	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10	3491995	248737452	513169	5	8495											
FAM178B	51252	mdanderson.org	37	chr2	97633354	97633354	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctctcgctcctgctccaGggcctgttccctataggaag	9	16	1	0	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001122646	exon5	c.C637A	p.L213M	GCTCCAGGGCCTG		23	2	0.09	28	0	0				5	0	0				T	97633354	G	T	97633354	3	4	116	1	0	0	0	0	1	0	0	0	5533	991	35	3	1485	3	FAM178B	2	97633354	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10		97633354	145566019	6	8496											
ACVR2A	92	broad.mit.edu	37	chr2	148676128	148676128	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acatgaggatatacctggccTaaaagatggccacaaacctg	9	10	0	2	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	ACVR2A	NM_001616	exon7	c.T929A	p.L310Q	CTGGCCTAAAAGA		107	15	0.14	137	9	0.0656934307		125		11	0	0				A	148676128	T	A	148676128	3	1	116	1	0	0	0	0	1	0	0	0	222	1522	53	5	955	5	ACVR2A	2	148676128	Missense_Mutation	SNP	T	TCGA-XE-AANV-01A-11D-A435-10	51042774	148676128	94523245	7	8497											
STRADB	55437	hgsc.bcm.edu	37	chr2	202344886	202344886	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgatgaaaaagactcataCtgggaattctagggctgcca	10	9	2	3	rs146098224		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_018571	exon12	c.C1245T	p.Y415Y	CTCATACTGGGAA		146	10	0.07	142	0	0				155	0	0				T	202344886	C	T	202344886	2	4	116	1	0	0	0	0	0	0	0	1	15380	576	20	3		3	STRADB	2	202344886	Silent	SNP	C	TCGA-XE-AANV-01A-11D-A435-10	53668758	202344886	40854487	8	8498											
CPS1	1373	mdanderson.org	37	chr2	211444493	211444493	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gactaaaataattcgggataAggtataatcatcatctttag	7	5	3	0	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001122633	exon6	c.A545T	p.K182M	GGGATAAGGTATA		41	3	0.07	55	0	0				7	0	0				T	211444493	A	T	211444493	3	4	116	1	0	0	0	0	1	0	0	0	3846	86	3	5	567	5	CPS1	2	211444493	Missense_Mutation	SNP	A	TCGA-XE-AANV-01A-11D-A435-10	9099607	211444493	31754880	9	8499											
UGT1A10	54575	mdanderson.org	37	chr2	234545847	234545847	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagtatctttttagaaatGccctagaaatagcctctgaa	7	9	2	3	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_019075	exon1	c.G679T	p.A227S	AGAAATGCCCTAG		133	5	0.04	193	1	0.0051813472				0	0					T	234545847	G	T	234545847	3	4	116	1	0	0	0	0	1	0	0	0	17004	1319	46	2	681	2	UGT1A10	2	234545847	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10	23101354	234545847	8653526	10	8500											
PASK	23178	broad.mit.edu	37	chr2	242063441	242063441	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gctggcaaggaacaggcgggTcctggcggctgagtcgcgtt	18	10	0	1	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	PASK	NM_015148	exon11	c.A2827C	p.T943P	GGCGGGTCCTGGC		57	14	0.25	66	12	0.1818181818		230		110	8	0.07				G	242063441	T	G	242063441	3	3	116	1	0	0	0	0	1	0	0	0	11518	1667	58	4	1176	4	PASK	2	242063441	Missense_Mutation	SNP	T	TCGA-XE-AANV-01A-11D-A435-10	7517594	242063441	1135932	11	8501											
ITIH1	3697	broad.mit.edu	37	chr3	52825612	52825612	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaagccagatgccacgatGgtggtgaggaaccgccggct	14	11	0	2	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	ITIH1	NM_002215	exon21	c.G2574T	p.M858I	CACGATGGTGGTG		54	3	0.06	59	1	0.0169491525		108		0	0					T	52825612	G	T	52825612	3	4	116	1	0	0	0	0	1	0	0	0	7946	1348	47	3	2656	3	ITIH1	3	52825612	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10		52825612	145196818	12	8502											
TMCC1	23023	broad.mit.edu	37	chr3	129370614	129370614	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctccatcttggagatgcGcgtctggcatgcctccaggg	13	13	2	1	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	TMCC1	NM_001017395	exon6	c.C1672A	p.R558S	AGATGCGCGTCTG		78	4	0.05	79	0	0		105		36	0	0				T	129370614	G	T	129370614	3	4	116	1	0	0	0	0	1	0	0	0	16051	1087	38	1	293	1	TMCC1	3	129370614	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10	76545002	129370614	68651816	13	8503											
DGKQ	1609	mdanderson.org	37	chr4	961354	961354	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taccagcacctcctcggcacCggccaggcgggacaccgtga	12	17	0	1	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001347	exon8	c.G970A	p.G324S	CGGCACCGGCCAG		52	3	0.06	92	0	0				10	0	0				T	961354	C	T	961354	3	4	116	1	0	0	0	0	1	0	0	0	4501	652	23	1	1922	1	DGKQ	4	961354	Missense_Mutation	SNP	C	TCGA-XE-AANV-01A-11D-A435-10		961354	190192922	14	8504											
ATP10D	57205	mdanderson.org	37	chr4	47563065	47563065	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tactacttgaatctgccatgAggttggagaacaaacttaca	8	8	1	3	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_020453	exon14	c.A2641G	p.R881G	GCCATGAGGTTGG		61	3	0.05	96	0	0				6	0	0				G	47563065	A	G	47563065	3	3	116	1	0	0	0	0	1	0	0	0	1117	295	11	4	2691	4	ATP10D	4	47563065	Missense_Mutation	SNP	A	TCGA-XE-AANV-01A-11D-A435-10	46601711	47563065	143591211	15	8505											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	55593667	55593667	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agacccaacacaacttccttAtgatcacaaatgggagtttc	6	11	1	2	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_000222	exon11	c.A1733G	p.Y578C	TTCCTTATGATCA		89	25	0.28	137	0	0				223	143	0.64				G	55593667	A	G	55593667	3	3	116	1	0	0	0	0	1	0	0	0	8371	449	16	4	1775	4	KIT	4	55593667	Missense_Mutation	SNP	A	TCGA-XE-AANV-01A-11D-A435-10	8030602	55593667	135560609	16	8506											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	55599348	55599348	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatgattctaattatgtggTtaaaggaaacgtgagtaccc	10	5	1	2	rs121913524	alternate_allele	TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	KIT,NS,lymphoid_neoplasm,0,31	KIT	NM_000222	exon17	c.T2474A	p.V825D	ATGTGGTTAAAGG		51	17	0.33	90	0	0		0	31	338	172	0.51				A	55599348	T	A	55599348	3	1	116	1	0	0	0	0	1	0	0	0	8371	1725	60	5	2540	5	KIT	4	55599348	Missense_Mutation	SNP	T	TCGA-XE-AANV-01A-11D-A435-10	5681	55599348	135554928	17	8507											
EIF4E	1977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	99812429	99812429	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaaacttggagatcagccgCaggtttgcttgccaagtttt	10	9	2	1	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001130678	exon3	c.G240A	p.L80L	CAGCCGCAGGTTT		230	43	0.19	333	0	0				164	67	0.41				T	99812429	C	T	99812429	2	4	116	1	0	0	0	0	0	0	0	1	5056	697	25	2		2	EIF4E	4	99812429	Silent	SNP	C	TCGA-XE-AANV-01A-11D-A435-10	44213081	99812429	91341847	18	8508											
PALLD	23022	broad.mit.edu	37	chr4	169632923	169632923	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttcaaatgcaattcaatGctgctgagagggaaacgaac	9	10	2	1	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	PALLD_ENST00000335742,NS,carcinoma,-1,2	PALLD	NM_001166108	exon10	c.G1813T	p.A605S	TTCAATGCTGCTG		145	5	0.03	162	1	0.0061728395		179	2	5	0	0				T	169632923	G	T	169632923	3	4	116	1	0	0	0	0	1	0	0	0	11453	1319	46	2	1847	2	PALLD	4	169632923	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10	69820494	169632923	21521353	19	8509											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	89949379	89949379	+	Frame_Shift_Del	DEL	T	T	-													gtggaacggatgctttgtacTttaccggactagagggtgca					novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	GPR98	NM_032119	exon20	c.3987delC	p.Y1329fs	TTGTACTTTACCG		154	26	0.17	158	0	0		605		2	0	0				-	89949379	T	-	89949379	7	5	116	1	0	1	0	1	0	0	0	0	6761	1609	56	0	4066	0	GPR98	5	89949379	Frame_Shift_Del	DEL	T	TCGA-XE-AANV-01A-11D-A435-10		89949379	90965881	20	8510											
PWWP2A	114825	mdanderson.org	37	chr5	159546149	159546149	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	cagctccggccccaccgcctCtgggctgcgggcgagctccc	13	20	1	0	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_052927	exon1	c.G247T	p.E83X	CCGCCTCTGGGCT		12	3	0.25	8	0	0				8	0	0				A	159546149	C	A	159546149	4	1	116	1	0	0	0	0	0	1	0	0	12896	922	32	3	2170	3	PWWP2A	5	159546149	Nonsense_Mutation	SNP	C	TCGA-XE-AANV-01A-11D-A435-10	69596770	159546149	21369111	21	8511											
CPLX2	10814	broad.mit.edu	37	chr5	175306867	175306869	+	In_Frame_Del	DEL	AGG	AGG	-													ccagtatgggctgaagaagaAggaggagaaggaagcagagg					novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	AGG	AGG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	CPLX2	NM_006650	exon5	c.224_226del	p.75_76del	AGAAGAAGGAGGA		129	9	0.07	144	0	0		42		0	0					-	175306869	AGG	-	175306867	7	5	116	1	0	1	0	1	0	0	0	0	3828	72	3	0	234	0	CPLX2	5	175306867	In_Frame_Del	DEL	AGG	TCGA-XE-AANV-01A-11D-A435-10	15760718	175306867	5608393	22	8512											
CLIC1	1192	mdanderson.org	37	chr6	31702039	31702039	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttggccccatcactgccaGcctgaaaagtaaccccaacc	6	17	2	1	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001288	exon2	c.C41T	p.A14V	CTGCCAGCCTGAA		45	3	0.07	75	0	0				493	0	0				A	31702039	G	A	31702039	3	1	116	1	0	0	0	0	1	0	0	0	3548	985	34	2	704	2	CLIC1	6	31702039	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10		31702039	139413028	23	8513											
ANKS1A	23294	hgsc.bcm.edu	37	chr6	34857324	34857324	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggcggcggcggcagcggcGgcggcggcggcggcctcggc	24	15	0	0	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	ANKS1A,NS,carcinoma,0,1	ANKS1A	NM_015245	exon1	c.G145A	p.G49S	AGCGGCGGCGGCG		6	3	0.5	6	1	0.1666666667		0	1	3	0	0				A	34857324	G	A	34857324	3	1	116	1	0	0	0	0	1	0	0	0	682	1116	39	1	147	1	ANKS1A	6	34857324	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10	3155285	34857324	136257743	24	8514											
FOXK1	221937	mdanderson.org	37	chr7	4799057	4799057	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaacctcacagcagcccgcGggccacgccatccacgtcgt	10	18	1	0	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001037165	exon7	c.G1527T	p.A509A	GCCCGCGGGCCAC		19	2	0.11	30	0	0				16	0	0				T	4799057	G	T	4799057	2	4	116	1	0	0	0	0	0	0	0	1	6047	1103	39	1		1	FOXK1	7	4799057	Silent	SNP	G	TCGA-XE-AANV-01A-11D-A435-10		4799057	154339606	25	8515											
RAC1	5879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	6426908	6426908	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	atttcctggagaatatatccCtactgtgtaagtatcttaaa	6	7	1	1	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_006908	exon2	c.C101G	p.P34R	ATATCCCTACTGT		142	18	0.13	127	0	0				59	10	0.17				G	6426908	C	G	6426908	3	3	116	1	0	0	0	0	1	0	0	0	13025	681	24	5	107	5	RAC1	7	6426908	Missense_Mutation	SNP	C	TCGA-XE-AANV-01A-11D-A435-10	1627851	6426908	152711755	26	8516											
LRCH4	4034	broad.mit.edu	37	chr7	100183685	100183685	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcgtggctgccgcctcctcAcccccggcggcgagtggagc	15	17	1	0	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	LRCH4	NM_002319	exon1	c.T39G	p.G13G	CTCCTCACCCCCG		102	31	0.3	77	24	0.3116883117		53		94	6	0.06				C	100183685	A	C	100183685	2	2	116	1	0	0	0	0	0	0	0	1	8979	146	6	4		4	LRCH4	7	100183685	Silent	SNP	A	TCGA-XE-AANV-01A-11D-A435-10	93756777	100183685	58954978	27	8517											
MLL3	58508	bcgsc.ca	37	chr7	151945089	151945089	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtaagttgttggcatgatGtttccagcagaggaactaag	12	5	0	2	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	MLL3	NM_170606	exon14	c.C2430T	p.N810N	CATGATGTTTCCA		489	19	0.04	400	7	0.0175		1564		15	1	0.07	rescued with RNA-seq			A	151945089	G	A	151945089	2	1	116	1	0	0	0	0	0	0	0	1	9669	1368	48	3		3	MLL3	7	151945089	Silent	SNP	G	TCGA-XE-AANV-01A-11D-A435-10	51761404	151945089	7193574	28	8518											
UNC5D	137970	mdanderson.org	37	chr8	35453077	35453077	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catgcttctttgcagatttaCggaaaaactttgaacaagac	7	8	1	3	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_080872	exon4	c.C472T	p.R158W	GATTTACGGAAAA		50	3	0.06	54	0	0				0	0					T	35453077	C	T	35453077	3	4	116	1	0	0	0	0	1	0	0	0	17054	527	19	1	486	1	UNC5D	8	35453077	Missense_Mutation	SNP	C	TCGA-XE-AANV-01A-11D-A435-10		35453077	110910945	29	8519											
ADAMTSL1	92949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	18892551	18892551	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtggacacccaggcctgtaAccagcagctgtgtgtggagt	14	10	0	0	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001040272	exon26	c.A4808G	p.N1603S	CCTGTAACCAGCA		61	11	0.18	67	0	0				1	0	0				G	18892551	A	G	18892551	3	3	116	1	0	0	0	0	1	0	0	0	273	43	2	4	4914	4	ADAMTSL1	9	18892551	Missense_Mutation	SNP	A	TCGA-XE-AANV-01A-11D-A435-10		18892551	122320880	30	8520											
BICD2	23299	mdanderson.org	37	chr9	95481138	95481138	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccgtcccaccatctgctcGgcccgcctcaggagccagca	9	21	2	0	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001003800	exon5	c.C1789A	p.R597R	CTGCTCGGCCCGC		50	3	0.06	48	0	0				25	0	0				T	95481138	G	T	95481138	2	4	116	1	0	0	0	0	0	0	0	1	1428	1124	39	1		1	BICD2	9	95481138	Silent	SNP	G	TCGA-XE-AANV-01A-11D-A435-10	76588587	95481138	45732293	31	8521											
C9orf91	203197	broad.mit.edu	37	chr9	117379536	117379536	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgcccccctcctcccctGgctggagtgccctgcctgga	10	19	0	0	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	C9orf91	NM_153045	exon2	c.G61T	p.G21C	TCCCCTGGCTGGA		305	5	0.02	292	1	0.0034246575		32		12	0	0				T	117379536	G	T	117379536	3	4	116	1	0	0	0	0	1	0	0	0	2523	1348	47	3	63	3	C9orf91	9	117379536	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10	21898398	117379536	23833895	32	8522											
ITIH5	80760	mdanderson.org	37	chr10	7618461	7618461	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctgcaccaccggttcggGtcccatggcagccgacatgc	12	16	1	0	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001001851	exon10	c.C1933A	p.P645T	GTTCGGGTCCCAT		33	3	0.09	51	0	0				8	0	0				T	7618461	G	T	7618461	3	4	116	1	0	0	0	0	1	0	0	0	7950	1261	44	3	1038	3	ITIH5	10	7618461	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10		7618461	127916286	33	8523											
GATA3	2625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	8115773	8115773	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgtctagcaaatccaaAaagtgcaaaaaagtgcatga	7	6	1	1	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001002295	exon6	c.A1122C	p.K374N	ATCCAAAAAGTGC		129	27	0.21	114	0	0				11	0	0				C	8115773	A	C	8115773	3	2	116	1	0	0	0	0	1	0	0	0	6294	11	1	4	1140	4	GATA3	10	8115773	Missense_Mutation	SNP	A	TCGA-XE-AANV-01A-11D-A435-10	497312	8115773	127418974	34	8524											
RRP12	23223	mdanderson.org	37	chr10	99126540	99126540	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctcctcctcctcctcctcCtcttcttcctcctccacggc	4	23	2	0	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_015179	exon27	c.G3174A	p.E1058E	CTCCTCCTCTTCT		61	4	0.07	91	0	0				144	1	0.01				T	99126540	C	T	99126540	2	4	116	1	0	0	0	0	0	0	0	1	13737	680	24	3		3	RRP12	10	99126540	Silent	SNP	C	TCGA-XE-AANV-01A-11D-A435-10	91010767	99126540	36408207	35	8525											
CNNM1	26507	mdanderson.org	37	chr10	101089211	101089211	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggactgctgcagccgaggcGctgtgctcctgctcttcttt	13	13	2	0	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_020348	exon1	c.G67T	p.A23S	CGAGGCGCTGTGC		26	2	0.08	31	0	0				1	0	0				T	101089211	G	T	101089211	3	4	116	1	0	0	0	0	1	0	0	0	3635	1087	38	1	69	1	CNNM1	10	101089211	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10	1962671	101089211	34445536	36	8526											
UBQLN3	50613	broad.mit.edu;mdanderson.org	37	chr11	5529527	5529527	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggtctccaccttgtccaGtactgttctctgtggggtat	10	11	2	0	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	UBQLN3	NM_017481	exon2	c.C1262A	p.T421N	TGTCCAGTACTGT		102	5	0.05	161	0	0		107		0	0					T	5529527	G	T	5529527	3	4	116	1	0	0	0	0	1	0	0	0	16958	1029	36	3	709	3	UBQLN3	11	5529527	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10		5529527	129476989	37	8527											
DCHS1	8642	mdanderson.org	37	chr11	6643167	6643167	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agctgggggacatggcagctGaggacagggagccttcatgg	18	8	1	1	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	DCHS1,pharynx,carcinoma,0,1	DCHS1	NM_003737	exon21	c.C9740A	p.S3247X	GCAGCTGAGGACA		40	3	0.08	74	0	0		0	1	48	0	0				T	6643167	G	T	6643167	4	4	116	1	0	0	0	0	0	1	0	0	4310	1294	45	3	160	3	DCHS1	11	6643167	Nonsense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10	1113640	6643167	128363349	38	8528											
TMEM135	65084	broad.mit.edu	37	chr11	87032260	87032260	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cagatttgctgtcatgaaccGaaaagtccttgatgtttttg	9	7	1	3	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	TMEM135,colon,carcinoma,+1,1	TMEM135	NM_022918	exon15	c.G1262T	p.R421L	TGAACCGAAAAGT		96	3	0.03	139	0	0		40	1	20	0	0				T	87032260	G	T	87032260	3	4	116	1	0	0	0	0	1	0	0	0	16110	1058	37	1	1320	1	TMEM135	11	87032260	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10	80389093	87032260	47974256	39	8529											
ZBTB16	7704	mdanderson.org	37	chr11	114121101	114121101	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgctcccgggactactcgGccatgatcaagcacctgaga	11	14	1	2	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_006006	exon7	c.G1846T	p.A616S	TACTCGGCCATGA		38	3	0.08	62	0	0				2	0	0				T	114121101	G	T	114121101	3	4	116	1	0	0	0	0	1	0	0	0	17584	1203	42	2	1868	2	ZBTB16	11	114121101	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10	27088841	114121101	20885415	40	8530											
ETV6	2120	mdanderson.org	37	chr12	12022716	12022716	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgatgcccagccccatcatGcaccctctgatcctgaaccc	6	19	2	3	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001987	exon5	c.G822T	p.M274I	CATCATGCACCCT		50	3	0.06	31	0	0				13	0	0				T	12022716	G	T	12022716	3	4	116	1	0	0	0	0	1	0	0	0	5311	1319	46	2	840	2	ETV6	12	12022716	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10		12022716	121829179	41	8531											
TYRO3	7301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	41854893	41854893	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gatcgggggacccgctccctCtccatctgttttaaatgtaa	9	12	2	0	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_006293	exon4	c.C557T	p.S186F	CTCCCTCTCCATC		76	11	0.14	77	0	0				127	20	0.16				T	41854893	C	T	41854893	3	4	116	1	0	0	0	0	1	0	0	0	16875	913	32	3	571	3	TYRO3	15	41854893	Missense_Mutation	SNP	C	TCGA-XE-AANV-01A-11D-A435-10		41854893	60676499	42	8532											
KBTBD13	390594	mdanderson.org	37	chr15	65369189	65369189	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaccctggtgcaggtgtgGgtgggcggccagctcttcca	16	12	1	1	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001101362	exon1	c.G36T	p.W12C	GGTGTGGGTGGGC		26	3	0.12	13	0	0				3	0	0				T	65369189	G	T	65369189	3	4	116	1	0	0	0	0	1	0	0	0	8035	1241	43	3	38	3	KBTBD13	15	65369189	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10	23514296	65369189	37162203	43	8533											
ARNT2	9915	broad.mit.edu	37	chr15	80883970	80883970	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggaagtctggtcgcagtgGcaaagccagcaccatggcca	13	12	1	0	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	ARNT2	NM_014862	exon18	c.G1980A	p.W660X	GCAGTGGCAAAGC		198	4	0.02	207	1	0.0048309179		88		2	0	0				A	80883970	G	A	80883970	4	1	116	1	0	0	0	0	0	1	0	0	965	1212	42	2	2050	2	ARNT2	15	80883970	Nonsense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10	15514781	80883970	21647422	44	8534											
C16orf11	146325	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	614076	614076	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctcagcgccccaccccggCcccccgcctgtactacccgc	7	26	1	0	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	C16orf11	NM_145270	exon2	c.C782T	p.A261V	CCCCGGCCCCCCG		17	4	0.24	26	0	0		27		0	0					T	614076	C	T	614076	3	4	116	1	0	0	0	0	1	0	0	0	1817	739	26	2	784	2	C16orf11	16	614076	Missense_Mutation	SNP	C	TCGA-XE-AANV-01A-11D-A435-10		614076	89740677	45	8535											
EME2	197342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	1825969	1825969	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgtcacagccttcccctcCccccgccttctgcagcaggt	8	19	2	0	rs143964421	bycluster;byfrequency;by1000genomes	TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001257370	exon7	c.C951A	p.S317S	CCCCTCCCCCCGC		35	8	0.23	40	0	0	0			1	0	0				A	1825969	C	A	1825969	2	1	116	1	0	0	0	0	0	0	0	1	5117	610	22	3		3	EME2	16	1825969	Silent	SNP	C	TCGA-XE-AANV-01A-11D-A435-10	1211893	1825969	88528784	46	8536											
FAM65A	79567	mdanderson.org	37	chr16	67575907	67575907	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaggcccctggtgcagcaGcccgagccccttcccatcca	9	20	0	0	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001193523	exon13	c.G1278T	p.Q426H	GCAGCAGCCCGAG		25	3	0.12	48	0	0				32	0	0				T	67575907	G	T	67575907	3	4	116	1	0	0	0	0	1	0	0	0	5633	962	34	2	1264	2	FAM65A	16	67575907	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10	65749938	67575907	22778846	47	8537											
CENPT	80152	hgsc.bcm.edu	37	chr16	67864336	67864336	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctctgtgtcttgcgaccGgcagcctgctcagcgtcttc	11	15	4	0	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_025082	exon11	c.C819T	p.A273A	GCGACCGGCAGCC		100	4	0.04	111	0	0				179	0	0				A	67864336	G	A	67864336	2	1	116	1	0	0	0	0	0	0	0	1	3264	1103	39	1		1	CENPT	16	67864336	Silent	SNP	G	TCGA-XE-AANV-01A-11D-A435-10	288429	67864336	22490417	48	8538											
ZBTB4	57659	broad.mit.edu;mdanderson.org	37	chr17	7366300	7366300	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcttaggcttgtaggagtaGtagggcctccagagctggtc	15	9	0	1	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	ZBTB4	NM_001128833	exon4	c.C2001A	p.Y667X	GGAGTAGTAGGGC		41	3	0.07	43	0	0		163		23	0	0				T	7366300	G	T	7366300	4	4	116	1	0	0	0	0	0	1	0	0	17599	1024	36	3	1044	3	ZBTB4	17	7366300	Nonsense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10		7366300	73828910	49	8539											
CDH19	28513	mdanderson.org	37	chr18	64211262	64211262	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cagacaccacgcctacaaatGatccctgtggggtttcttca	8	13	2	2	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001271028	exon7	c.C1160A	p.S387X	ACAAATGATCCCT		81	4	0.05	129	0	0				1	0	0				T	64211262	G	T	64211262	4	4	116	1	0	0	0	0	0	1	0	0	3126	1294	45	3	1182	3	CDH19	18	64211262	Nonsense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10		64211262	13865986	50	8540											
DOT1L	84444	mdanderson.org	37	chr19	2226425	2226425	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttcccggctccctgtcggGggctgacggactcagcccgg	14	16	1	1	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_032482	exon27	c.G3905T	p.G1302V	TGTCGGGGGCTGA		20	2	0.1	22	1	0.0454545455				79	0	0				T	2226425	G	T	2226425	3	4	116	1	0	0	0	0	1	0	0	0	4736	1232	43	3	4011	3	DOT1L	19	2226425	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10		2226425	56902558	51	8541											
OR7C2	26658	broad.mit.edu	37	chr19	15052604	15052604	+	Frame_Shift_Del	DEL	T	T	-													caggctgcctcactcagataTtttttttcattgcatttgga					novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	OR7C2	NM_012377	exon1	c.304delT	p.F102fs	CAGATATTTTTTT		191	8	0.04	166	0	0		50		0	0					-	15052604	T	-	15052604	7	5	116	1	0	1	0	1	0	0	0	0	11264	1493	52	0	306	0	OR7C2	19	15052604	Frame_Shift_Del	DEL	T	TCGA-XE-AANV-01A-11D-A435-10	12826179	15052604	44076379	52	8542											
ZNF676	163223	ucsc.edu	37	chr19	22363172	22363172	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgccacattcttcacatttGtagggtttctctccagcatg	7	11	3	0	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	ZNF676	NM_001001411	exon3	c.C1347T	p.Y449Y	ACATTTGTAGGGT		75	3	0.04	74	3	0.0405405405		146		56	15	0.27				A	22363172	G	A	22363172	2	1	116	1	0	0	0	0	0	0	0	1	18139	1372	48	3		3	ZNF676	19	22363172	Silent	SNP	G	TCGA-XE-AANV-01A-11D-A435-10	7310568	22363172	36765811	53	8543											
ZNF540	163255	hgsc.bcm.edu	37	chr19	38103206	38103206	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttagtgtatgcggacaacTtacccgtcatcagaaaattc	7	9	2	1	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_152606	exon5	c.T1025C	p.L342P	GACAACTTACCCG		77	4	0.05	99	0	0				17	0	0				C	38103206	T	C	38103206	3	2	116	1	0	0	0	0	1	0	0	0	18031	1609	56	4	1039	4	ZNF540	19	38103206	Missense_Mutation	SNP	T	TCGA-XE-AANV-01A-11D-A435-10	15740034	38103206	21025777	54	8544											
TOMM40	10452	broad.mit.edu	37	chr19	45404037	45404037	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacgccttgcctggccctgGgtggagagctggtctaccac	13	14	2	1	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	TOMM40	NM_001128917	exon6	c.G694T	p.G232C	GCCCTGGGTGGAG		127	4	0.03	159	0	0		13		478	0	0				T	45404037	G	T	45404037	3	4	116	1	0	0	0	0	1	0	0	0	16417	1232	43	3	716	3	TOMM40	19	45404037	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10	7300831	45404037	13724946	55	8545											
ZNF524	147807	mdanderson.org	37	chr19	56113901	56113901	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgcactcagagctgaagccGcaccagtgcaaggtttgcgg	13	12	1	2	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_153219	exon2	c.G423A	p.P141P	GAAGCCGCACCAG		25	3	0.12	26	0	0				34	0	0				A	56113901	G	A	56113901	2	1	116	1	0	0	0	0	0	0	0	1	18022	1074	38	1		1	ZNF524	19	56113901	Silent	SNP	G	TCGA-XE-AANV-01A-11D-A435-10	10709864	56113901	3015082	56	8546											
SIGLEC1	6614	mdanderson.org	37	chr20	3673769	3673769	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtaggtcaggcgcaggttgCggggcgcgtctgcagggcat	20	9	2	0	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_023068	exon14	c.G3518A	p.R1173H	AGGTTGCGGGGCG		19	2	0.11	24	0	0				10	0	0				T	3673769	C	T	3673769	3	4	116	1	0	0	0	0	1	0	0	0	14359	768	27	1	1643	1	SIGLEC1	20	3673769	Missense_Mutation	SNP	C	TCGA-XE-AANV-01A-11D-A435-10		3673769	59351751	57	8547											
PREX1	57580	broad.mit.edu;mdanderson.org	37	chr20	47273634	47273634	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcgggagcagaaggactgGttgaggatggactccacctc	16	10	0	2	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	PREX1_ENST00000396220,NS,carcinoma,0,2	PREX1	NM_020820	exon18	c.C2067A	p.N689K	GGACTGGTTGAGG		49	3	0.06	50	0	0		441	2	122	0	0				T	47273634	G	T	47273634	3	4	116	1	0	0	0	0	1	0	0	0	12527	1252	44	3	3004	3	PREX1	20	47273634	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10	43599865	47273634	15751886	58	8548											
MX1	4599	bcgsc.ca	37	chr21	42823120	42823120	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccggcttgctttcacagatGtttcgataaaaaattttgaa	7	7	1	2	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	MX1	NM_001144925	exon17	c.G1459T	p.V487F	ACAGATGTTTCGA		137	6	0.04	104	0	0		58		433	0	0				T	42823120	G	T	42823120	3	4	116	1	0	0	0	0	1	0	0	0	10044	1377	48	3	1501	3	MX1	21	42823120	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10		42823120	5306775	59	8549											
NAP1L3	4675	mdanderson.org	37	chrX	92927835	92927835	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcacattcttcttctgtagGctcgtattctgcattgatga	7	9	5	2	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_004538	exon1	c.C469A	p.P157T	CTGTAGGCTCGTA		79	4	0.05	101	0	0				33	0	0				T	92927835	G	T	92927835	3	4	116	1	0	0	0	0	1	0	0	0	10205	1203	42	2	1055	2	NAP1L3	23	92927835	Missense_Mutation	SNP	G	TCGA-XE-AANV-01A-11D-A435-10		92927835	62342725	60	8550											
LRRC7	57554	broad.mit.edu	37	chr1	70504282	70504282	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctactgaaatacctagtccTttttctccaggcgtaccatg	6	12	2	1	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	LRRC7	NM_020794	exon19	c.T2661C	p.P887P	TAGTCCTTTTTCT		170	5	0.03	183	1	0.0054644809		400		1	0	0				C	70504282	T	C	70504282	2	2	117	1	0	0	0	0	0	0	0	1	9064	1596	56	4		4	LRRC7	1	70504282	Silent	SNP	T	TCGA-XE-AAO3-01A-11D-A435-10		70504282	178746339	1	8551											
SCCPDH	51097	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	246922343	246922343	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctgtcttgcaggtggccaAtttcttattgtcgggaactc	11	9	3	0	rs142346609	bycluster;byfrequency;by1000genomes	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_016002	exon7	c.A703G	p.I235V	TGGCCAATTTCTT		162	24	0.15	137	0	0	0.006			77	21	0.27				G	246922343	A	G	246922343	3	3	117	1	0	0	0	0	1	0	0	0	13937	101	4	4	729	4	SCCPDH	1	246922343	Missense_Mutation	SNP	A	TCGA-XE-AAO3-01A-11D-A435-10	176418061	246922343	2328278	2	8552											
MFSD2B	388931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	24247062	24247062	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcccacctgcatgatccttGctgggctctgcatcctcatg	9	15	2	1	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001080473	exon13	c.G1411C	p.A471P	ATCCTTGCTGGGC		67	20	0.3	95	0	0				1	1	1				C	24247062	G	C	24247062	3	2	117	1	0	0	0	0	1	0	0	0	9580	1319	46	5	1461	5	MFSD2B	2	24247062	Missense_Mutation	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10		24247062	218952311	3	8553											
DTNB	1838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	25655860	25655860	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagacgctgaatctcctgcAggatctctctagagaggatg	13	9	3	3	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_021907	exon14	c.T1352A	p.L451Q	TCCTGCAGGATCT		31	7	0.23	34	0	0				36	10	0.28				T	25655860	A	T	25655860	3	4	117	1	0	0	0	0	1	0	0	0	4815	188	7	5	559	5	DTNB	2	25655860	Missense_Mutation	SNP	A	TCGA-XE-AAO3-01A-11D-A435-10	1408798	25655860	217543513	4	8554											
POTEF	728378	broad.mit.edu	37	chr2	130877755	130877755	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccaccttgctcttgctgcTccccctgcagcaggggaagc	11	17	1	0	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	POTEF	NM_001099771	exon3	c.A334G	p.S112G	TGCTGCTCCCCCT		136	5	0.04	184	2	0.0108695652		140		0	0					C	130877755	T	C	130877755	3	2	117	1	0	0	0	0	1	0	0	0	12311	1551	54	4	2953	4	POTEF	2	130877755	Missense_Mutation	SNP	T	TCGA-XE-AAO3-01A-11D-A435-10	105221895	130877755	112321618	5	8555											
KYNU	8942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	143685255	143685255	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tatggtcatgaagtggggaaGcgtccttggattacaggaga	15	5	1	2	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001199241	exon5	c.G318A	p.K106K	GGGGAAGCGTCCT		107	20	0.19	158	0	0				9	1	0.11				A	143685255	G	A	143685255	2	1	117	1	0	0	0	0	0	0	0	1	8625	962	34	2		2	KYNU	2	143685255	Silent	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10	12807500	143685255	99514118	6	8556											
HOXD11	3237	mdanderson.org	37	chr2	176972598	176972598	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcgcggtgggccgcaatgGcatcttgccacagggcttcg	15	13	1	0	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_021192	exon1	c.G515A	p.G172D	GCAATGGCATCTT		36	3	0.08	24	0	0				0	0					A	176972598	G	A	176972598	3	1	117	1	0	0	0	0	1	0	0	0	7360	1203	42	2	517	2	HOXD11	2	176972598	Missense_Mutation	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10	33287343	176972598	66226775	7	8557											
UBE2E1	7324	broad.mit.edu	37	chr3	23848778	23848778	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gctatgtcggatgacgattcGagggccagcaccagctcctc	12	13	0	1	rs140553923	bycluster;by1000genomes;alternate_allele	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	UBE2E1	NM_003341	exon2	c.G18T	p.S6S	CGATTCGAGGGCC		69	3	0.04	93	0	0		15		164	0	0				T	23848778	G	T	23848778	2	4	117	1	0	0	0	0	0	0	0	1	16912	1045	37	1		1	UBE2E1	3	23848778	Silent	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10		23848778	174173652	8	8558											
GOLGB1	2804	broad.mit.edu	37	chr3	121395740	121395740	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctaacaagaaacacttacGttgctgttcagttgctgaat	8	8	2	2	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	GOLGB1	NM_001256486	exon17	c.C9177A	p.N3059K	ACTTACGTTGCTG		171	6	0.04	153	0	0		319		156	1	0.01				T	121395740	G	T	121395740	5	4	117	1	0	0	0	0	0	0	1	0	6603	1159	40	1	641	1	GOLGB1	3	121395740	Splice_Site	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10	97546962	121395740	76626690	9	8559											
KALRN	8997	broad.mit.edu	37	chr3	124438155	124438155	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacagcagccacatgcttGcagcatccatggctgcagcc	9	17	0	0	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	KALRN	NM_001024660	exon60	c.G8799T	p.L2933F	ATGCTTGCAGCAT		124	4	0.03	120	0	0		556		1	0	0				T	124438155	G	T	124438155	3	4	117	1	0	0	0	0	1	0	0	0	8018	1310	46	2	9193	2	KALRN	3	124438155	Missense_Mutation	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10	3042415	124438155	73584275	10	8560											
ATP11B	23200	broad.mit.edu	37	chr3	182598724	182598724	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taacattggctgttggtgatGgtgctaatgacgtaagcatg	13	5	0	2	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	ATP11B	NM_014616	exon21	c.G2464T	p.G822C	GGTGATGGTGCTA		405	6	0.01	418	0	0		115		16	0	0				T	182598724	G	T	182598724	3	4	117	1	0	0	0	0	1	0	0	0	1119	1348	47	3	2546	3	ATP11B	3	182598724	Missense_Mutation	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10	58160569	182598724	15423706	11	8561											
MARCH6	10299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	10415633	10415633	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttggttaatgtcgttttggaCggggactgccaaaatccatg	12	7	0	0	rs182494860	bycluster;by1000genomes;alternate_allele	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	MARCH6,caecum,carcinoma,0,1	MARCH6	NM_005885	exon21	c.C2000G	p.T667R	TTTGGACGGGGAC		110	39	0.35	163	0	0		0	1	41	18	0.44				G	10415633	C	G	10415633	3	3	117	1	0	0	0	0	1	0	0	0	9354	536	19	5	2082	5	MARCH6	5	10415633	Missense_Mutation	SNP	C	TCGA-XE-AAO3-01A-11D-A435-10		10415633	170499627	12	8562											
GPR98	84059	mdanderson.org	37	chr5	90103520	90103520	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttcttcacctatcaggaGtgcagagcagtgctcctggc	11	11	3	1	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_032119	exon73	c.G14938T	p.V4980L	TCAGGAGTGCAGA		49	3	0.06	81	0	0				7	0	0				T	90103520	G	T	90103520	3	4	117	1	0	0	0	0	1	0	0	0	6761	1029	36	3	15228	3	GPR98	5	90103520	Missense_Mutation	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10	79687887	90103520	90811740	13	8563											
ANKRD32	84250	mdanderson.org	37	chr5	94024244	94024244	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taccagccttggggaaaactGgtgtgcttgggtctggaaag	15	7	1	0	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_032290	exon17	c.G2155T	p.G719C	AAAACTGGTGTGC		101	5	0.05	152	1	0.0065789474				39	0	0				T	94024244	G	T	94024244	3	4	117	1	0	0	0	0	1	0	0	0	655	1348	47	3	2217	3	ANKRD32	5	94024244	Missense_Mutation	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10	3920724	94024244	86891016	14	8564											
SKIV2L	6499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	31936112	31936112	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gctccctcttcaggaaggatCctccccttgcagccgtgacc	9	17	2	1	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_006929	exon24	c.C2866T	p.P956S	AAGGATCCTCCCC		70	15	0.21	75	0	0				90	10	0.11				T	31936112	C	T	31936112	3	4	117	1	0	0	0	0	1	0	0	0	14413	855	30	3	2960	3	SKIV2L	6	31936112	Missense_Mutation	SNP	C	TCGA-XE-AAO3-01A-11D-A435-10		31936112	139178955	15	8565											
SYNCRIP	10492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	86346826	86346826	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aataatggaacaagttcatcCtcaaatagatctcttgggat	7	7	3	1	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	SYNCRIP,right_upper_lobe,carcinoma,-2,2	SYNCRIP	NM_006372	exon6	c.G525A	p.E175E	TTCATCCTCAAAT		257	62	0.24	232	0	0		-2	2	245	47	0.19				T	86346826	C	T	86346826	2	4	117	1	0	0	0	0	0	0	0	1	15500	680	24	3		3	SYNCRIP	6	86346826	Silent	SNP	C	TCGA-XE-AAO3-01A-11D-A435-10	54410714	86346826	84768241	16	8566											
VPS41	27072	mdanderson.org	37	chr7	38902196	38902196	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acatcaagtaaataaaccttGccataatgtgtgcccaatgc	6	10	1	0	rs187909170	by1000genomes;alternate_allele	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_080631	exon4	c.C195A	p.G65G	AACCTTGCCATAA		127	5	0.04	72	0	0				45	0	0				T	38902196	G	T	38902196	2	4	117	1	0	0	0	0	0	0	0	1	17269	1306	46	2		2	VPS41	7	38902196	Silent	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10		38902196	120236467	17	8567											
TAS2R40	259286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	142919837	142919838	+	Frame_Shift_Del	DEL	AC	AC	-													ctgatcctctctctcaagagAcacaccctacacatgggaag					novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	AC	AC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	TAS2R40	NM_176882	exon1	c.665_666del	p.222_222del	CAAGAGACACACC		103	23	0.22	70	0	0		64		0	0					-	142919838	AC	-	142919837	7	5	117	1	0	1	0	1	0	0	0	0	15634	272	10	0	668	0	TAS2R40	7	142919837	Frame_Shift_Del	DEL	AC	TCGA-XE-AAO3-01A-11D-A435-10	104017641	142919837	16218826	18	8568											
SSPO	23145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	149486702	149486702	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcagggcaggtgacctgCgtccccggggaggtgtcctg	18	11	0	1	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_198455	exon31	c.C4476T	p.C1492C	GACCTGCGTCCCC		80	18	0.23	62	0	0				0	0					T	149486702	C	T	149486702	2	4	117	1	0	0	0	0	0	0	0	1	15244	776	27	1		1	SSPO	7	149486702	Silent	SNP	C	TCGA-XE-AAO3-01A-11D-A435-10	6566865	149486702	9651961	19	8569											
DUSP26	78986	broad.mit.edu	37	chr8	33449599	33449599	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcaggaagccccggttggGgatgatgcctcggtggtctt	15	11	2	1	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	DUSP26	NM_024025	exon4	c.C568A	p.P190T	GGTTGGGGATGAT		193	4	0.02	138	0	0		42		0	0					T	33449599	G	T	33449599	3	4	117	1	0	0	0	0	1	0	0	0	4849	1232	43	3	71	3	DUSP26	8	33449599	Missense_Mutation	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10		33449599	112914423	20	8570											
VPS13B	157680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	100733195	100733195	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaacctagagtactcaccCttgtacgaataactcctgta	6	12	1	2	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_017890	exon39	c.C7045T	p.L2349F	CTCACCCTTGTAC		128	23	0.18	118	0	0				7	3	0.43				T	100733195	C	T	100733195	3	4	117	1	0	0	0	0	1	0	0	0	17249	681	24	3	7389	3	VPS13B	8	100733195	Missense_Mutation	SNP	C	TCGA-XE-AAO3-01A-11D-A435-10	67283596	100733195	45630827	21	8571											
KIAA0020	9933	broad.mit.edu	37	chr9	2837296	2837296	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttgaactgctttacacccTttttcccaagttttgtgata	5	10	1	2	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	KIAA0020	NM_014878	exon3	c.A188G	p.K63R	ACACCCTTTTTCC		147	3	0.02	180	0	0		56		297	0	0				C	2837296	T	C	2837296	3	2	117	1	0	0	0	0	1	0	0	0	8193	1609	56	4	1822	4	KIAA0020	9	2837296	Missense_Mutation	SNP	T	TCGA-XE-AAO3-01A-11D-A435-10		2837296	138376135	22	8572											
GSN	2934	mdanderson.org	37	chr9	124088834	124088834	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgcccacctcatgagcctGtttggtgggaagcccatgat	11	14	1	2	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_000177	exon12	c.G1614T	p.L538L	GAGCCTGTTTGGT		84	4	0.05	85	0	0				128	0	0				T	124088834	G	T	124088834	2	4	117	1	0	0	0	0	0	0	0	1	6865	1364	48	3		3	GSN	9	124088834	Silent	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10	121251538	124088834	17124597	23	8573											
P4HA1	5033	hgsc.bcm.edu	37	chr10	74768046	74768046	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgttcatggagccatttattGgatactgtgagagaaaagta	11	5	1	2	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_000917	exon15	c.C1539A	p.S513S	TTTATTGGATACT		114	7	0.06	87	0	0				180	0	0				T	74768046	G	T	74768046	2	4	117	1	0	0	0	0	0	0	0	1	11402	1335	47	3		3	P4HA1	10	74768046	Silent	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10		74768046	60766701	24	8574											
DENND5A	23258	mdanderson.org	37	chr11	9225755	9225755	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcttcataaaatgtgaggGcaaacccaaatgtccgagag	9	10	2	2	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001243254	exon4	c.C401A	p.A134D	GTGAGGGCAAACC		49	3	0.06	74	0	0				37	0	0				T	9225755	G	T	9225755	3	4	117	1	0	0	0	0	1	0	0	0	4464	1203	42	2	3542	2	DENND5A	11	9225755	Missense_Mutation	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10		9225755	125780761	25	8575											
LPXN	9404	mdanderson.org	37	chr11	58322361	58322361	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catgagctcatccaactgagCagctgctgacgttttagaag	10	10	1	4	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001143995	exon4	c.G286A	p.A96T	ACTGAGCAGCTGC		46	3	0.07	55	0	0				27	0	0				T	58322361	C	T	58322361	3	4	117	1	0	0	0	0	1	0	0	0	8973	710	25	2	913	2	LPXN	11	58322361	Missense_Mutation	SNP	C	TCGA-XE-AAO3-01A-11D-A435-10	49096606	58322361	76684155	26	8576											
MS4A13	503497	mdanderson.org	37	chr11	60285575	60285575	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttatgattggcatctttcacAttttcatgtggtactttcta	6	7	4	1	rs10736706	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001100909	exon3	c.A19T	p.I7F	TTTCACATTTTCA		59	2	0.03	87	0	0				0	0					T	60285575	A	T	60285575	3	4	117	1	0	0	0	0	1	0	0	0	9905	217	8	5	21	5	MS4A13	11	60285575	Missense_Mutation	SNP	A	TCGA-XE-AAO3-01A-11D-A435-10	1963214	60285575	74720941	27	8577											
MYO7A	4647	mdanderson.org	37	chr11	76891521	76891521	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggaggaggccgagcgcaaGcatcaggtgagctgagagcc	17	9	1	2	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001127179	exon22	c.G2688T	p.K896N	GCGCAAGCATCAG		31	3	0.1	35	0	0				3	0	0				T	76891521	G	T	76891521	3	4	117	1	0	0	0	0	1	0	0	0	10129	962	34	2	2770	2	MYO7A	11	76891521	Missense_Mutation	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10	16605946	76891521	58114995	28	8578											
ARHGAP20	57569	mdanderson.org	37	chr11	110561320	110561320	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccaggataagagatggagcGctcctcctcctttctgctag	10	12	1	1	rs150049858	bycluster;byfrequency	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	ARHGAP20,caecum,carcinoma,0,1	ARHGAP20	NM_020809	exon3	c.C138T	p.S46S	TGGAGCGCTCCTC		64	4	0.06	84	0	0	0.001	0	1	0	0					A	110561320	G	A	110561320	2	1	117	1	0	0	0	0	0	0	0	1	867	1078	38	1		1	ARHGAP20	11	110561320	Silent	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10	33669799	110561320	24445196	29	8579											
HTR3A	3359	mdanderson.org	37	chr11	113854000	113854000	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgctgaccttcaccagttGgctgcacaccagtgagtatg	10	13	1	2	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_000869	exon5	c.G551T	p.W184L	CCAGTTGGCTGCA		44	3	0.07	86	0	0				0	0					T	113854000	G	T	113854000	3	4	117	1	0	0	0	0	1	0	0	0	7487	1357	47	3	595	3	HTR3A	11	113854000	Missense_Mutation	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10	3292680	113854000	21152516	30	8580											
KRT78	196374	mdanderson.org	37	chr12	53233575	53233575	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcgccctccagcagcctgCggtaagtggcaatctccaca	9	17	1	0	rs373055664		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_173352	exon7	c.G1241A	p.R414H	AGCCTGCGGTAAG		44	3	0.07	48	0	0				0	0					T	53233575	C	T	53233575	3	4	117	1	0	0	0	0	1	0	0	0	8533	768	27	1	333	1	KRT78	12	53233575	Missense_Mutation	SNP	C	TCGA-XE-AAO3-01A-11D-A435-10		53233575	80618320	31	8581											
CCDC60	160777	mdanderson.org	37	chr12	119954484	119954484	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cccggaggacagtcacaataGaaaatgggatgcaaagaaaa	11	7	1	2	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	CCDC60,bladder,carcinoma,0,1	CCDC60	NM_178499	exon8	c.G940T	p.E314X	ACAATAGAAAATG		45	3	0.07	41	0	0		0	1	0	0					T	119954484	G	T	119954484	4	4	117	1	0	0	0	0	0	1	0	0	2851	943	33	3	970	3	CCDC60	12	119954484	Nonsense_Mutation	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10	66720909	119954484	13897411	32	8582											
DACH1	1602	mdanderson.org	37	chr13	72440446	72440446	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgctgctgctactactGctgctgctgctgctgctgct	11	14	0	0	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_080759	exon1	c.C462T	p.S154S	ACTACTGCTGCTG		19	2	0.11	23	0	0				1	0	0				A	72440446	G	A	72440446	2	1	117	1	0	0	0	0	0	0	0	1	4244	1310	46	2		2	DACH1	13	72440446	Silent	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10		72440446	42729432	33	8583											
DCAF5	8816	mdanderson.org	37	chr14	69619649	69619649	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccccgctgggacaagaagCccaccactgacctcatgctg	10	16	1	2	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_003861	exon1	c.G47A	p.G16D	AAGAAGCCCACCA		44	3	0.07	40	0	0				22	0	0				T	69619649	C	T	69619649	3	4	117	1	0	0	0	0	1	0	0	0	4297	739	26	2	2817	2	DCAF5	14	69619649	Missense_Mutation	SNP	C	TCGA-XE-AAO3-01A-11D-A435-10		69619649	37729891	34	8584											
KIF26A	26153	mdanderson.org	37	chr14	104642874	104642874	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgctccgggtaggggagtGtgatacccaggcagcttctg	16	10	1	1	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_015656	exon12	c.G3749T	p.C1250F	GGGAGTGTGATAC		20	2	0.1	13	0	0				72	0	0				T	104642874	G	T	104642874	3	4	117	1	0	0	0	0	1	0	0	0	8335	1377	48	3	3795	3	KIF26A	14	104642874	Missense_Mutation	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10	35023225	104642874	2706666	35	8585											
DISP2	85455	mdanderson.org	37	chr15	40660380	40660380	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggctggcacctcgcgtctGctcttccagcgcctgctgcc	12	18	2	0	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_033510	exon8	c.G2067A	p.L689L	GCGTCTGCTCTTC		23	3	0.13	38	0	0				0	0					A	40660380	G	A	40660380	2	1	117	1	0	0	0	0	0	0	0	1	4568	1306	46	2		2	DISP2	15	40660380	Silent	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10		40660380	61871012	36	8586											
DET1	55070	broad.mit.edu	37	chr15	89056263	89056263	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaatagcgaaaggctcaaaAgggtgaaaggtgaaggcaac	14	5	1	2	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	DET1	NM_017996	exon6	c.T1605C	p.P535P	CTCAAAAGGGTGA		139	3	0.02	135	0	0		55		41	0	0				G	89056263	A	G	89056263	2	3	117	1	0	0	0	0	0	0	0	1	4478	59	3	4		4	DET1	15	89056263	Silent	SNP	A	TCGA-XE-AAO3-01A-11D-A435-10	48395883	89056263	13475129	37	8587											
PRR25	388199	mdanderson.org	37	chr16	855797	855797	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctggcctgcgcccacagGgaactcctgccatgcgggcc	14	17	0	0	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001013638	exon1	c.G355T	p.G119X	CCACAGGGAACTC		26	3	0.12	27	0	0				0	0					T	855797	G	T	855797	4	4	117	1	0	0	0	0	0	1	0	0	12646	1233	43	3	357	3	PRR25	16	855797	Nonsense_Mutation	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10		855797	89498956	38	8588											
PKD1	5310	mdanderson.org	37	chr16	2162857	2162857	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctagcgtggcattgggggaCagcacggccggcactgtgga	18	10	0	0	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001009944	exon13	c.G3093A	p.L1031L	GGGGGACAGCACG		18	2	0.11	19	0	0				17	0	0				T	2162857	C	T	2162857	2	4	117	1	0	0	0	0	0	0	0	1	12010	465	17	3		3	PKD1	16	2162857	Silent	SNP	C	TCGA-XE-AAO3-01A-11D-A435-10	1307060	2162857	88191896	39	8589											
PPL	5493	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	4943298	4943300	+	In_Frame_Del	DEL	CTC	CTC	-													aggatccctgtgatggccttCtcctgccggtccaggtcgct					novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	CTC	CTC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	PPL	NM_002705	exon14	c.1565_1567del	p.522_523del	GGCCTTCTCCTGC		39	11	0.28	48	0	0		168		4	0	0				-	4943300	CTC	-	4943298	7	5	117	1	0	1	0	1	0	0	0	0	12382	912	32	0	3740	0	PPL	16	4943298	In_Frame_Del	DEL	CTC	TCGA-XE-AAO3-01A-11D-A435-10	2780441	4943298	85411455	40	8590											
ANKRD11	29123	mdanderson.org	37	chr16	89357055	89357055	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgaagtccttgacgttgacGtctgccccctcgctgatgag	12	13	1	4	rs142820281	alternate_allele	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	ANKRD11,NS,carcinoma,-2,1	ANKRD11	NM_001256182	exon7	c.C579A	p.D193E	GTTGACGTCTGCC		40	3	0.08	57	0	0		-2	1	88	0	0				T	89357055	G	T	89357055	3	4	117	1	0	0	0	0	1	0	0	0	635	1136	40	1	7444	1	ANKRD11	16	89357055	Missense_Mutation	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10	84413757	89357055	997698	41	8591											
ALKBH5	54890	mdanderson.org	37	chr17	18087632	18087632	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccgggacaactataaggcGggcagccgggaggccgccgc	16	14	0	0	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_017758	exon1	c.G75A	p.A25A	TAAGGCGGGCAGC		20	3	0.15	13	0	0				22	0	0				A	18087632	G	A	18087632	2	1	117	1	0	0	0	0	0	0	0	1	526	1103	39	1		1	ALKBH5	17	18087632	Silent	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10		18087632	63107578	42	8592											
SUPT6H	6830	mdanderson.org	37	chr17	27028472	27028472	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccaggtccaacagccatgcAgccatcgactggggaaaaat	10	13	0	0	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	SUPT6H,NS,carcinoma,+1,1	SUPT6H	NM_003170	exon37	c.A5010G	p.A1670A	CCATGCAGCCATC		38	3	0.08	57	0	0		1	1	259	1	0				G	27028472	A	G	27028472	2	3	117	1	0	0	0	0	0	0	0	1	15455	175	7	4		4	SUPT6H	17	27028472	Silent	SNP	A	TCGA-XE-AAO3-01A-11D-A435-10	8940840	27028472	54166738	43	8593											
ATAD5	79915	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	29195417	29195417	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aatctgaagggaaaaagagaTgagaaacatgaaggtatttt	11	2	1	4	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	ATAD5	NM_024857	exon12	c.T3300A	p.D1100E	AAGAGATGAGAAA		88	26	0.3	97	1	0.0103092784		150		37	11	0.3				A	29195417	T	A	29195417	3	1	117	1	0	0	0	0	1	0	0	0	1075	1461	51	5	3346	5	ATAD5	17	29195417	Missense_Mutation	SNP	T	TCGA-XE-AAO3-01A-11D-A435-10	2166945	29195417	51999793	44	8594											
ARL16	339231	mdanderson.org	37	chr17	79650804	79650804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccgtgcttcgctccacccgGcacccgtagctcggcgccgc	11	20	0	0	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001040025	exon1	c.C52T	p.P18S	CACCCGGCACCCG		23	3	0.13	20	0	0				3	0	0				A	79650804	G	A	79650804	3	1	117	1	0	0	0	0	1	0	0	0	929	1203	42	2	561	2	ARL16	17	79650804	Missense_Mutation	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10	50455387	79650804	1544406	45	8595											
GALR1	2587	mdanderson.org	37	chr18	74968158	74968158	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaagaacatgtcaaagaaGtctgaagcatccaagaaaaa	8	6	2	5	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	GALR1,NS,carcinoma,+1,1	GALR1	NM_001480	exon2	c.G711T	p.K237N	AAAGAAGTCTGAA		45	3	0.07	109	0	0		1	1	0	0					T	74968158	G	T	74968158	3	4	117	1	0	0	0	0	1	0	0	0	6266	1020	36	3	717	3	GALR1	18	74968158	Missense_Mutation	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10		74968158	3109090	46	8596											
TMIGD2	126259	bcgsc.ca	37	chr19	4292842	4292842	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctcactcttctttggggcCccccggggccggtataggac	12	15	3	0	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	TMIGD2	NM_144615	exon5	c.G603C	p.G201G	TGGGGCCCCCCGG		97	6	0.06	102	0	0		38		1	0	0				G	4292842	C	G	4292842	2	3	117	1	0	0	0	0	0	0	0	1	16290	610	22	5		5	TMIGD2	19	4292842	Silent	SNP	C	TCGA-XE-AAO3-01A-11D-A435-10		4292842	54836141	47	8597											
CD209	30835	mdanderson.org	37	chr19	7810421	7810421	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cacccactgcagccttcagcTgggtcagctcctggtagatc	10	15	2	1	rs145850292	bycluster;byfrequency;by1000genomes	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_021155	exon4	c.A731G	p.Q244R	TTCAGCTGGGTCA		40	3	0.08	23	0	0	0.002			0	0					C	7810421	T	C	7810421	3	2	117	1	0	0	0	0	1	0	0	0	3006	1580	55	4	499	4	CD209	19	7810421	Missense_Mutation	SNP	T	TCGA-XE-AAO3-01A-11D-A435-10	3517579	7810421	51318562	48	8598											
IL12RB1	3594	ucsc.edu	37	chr19	18180385	18180385	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggatccgggtcttgcggcGcagtcaggctgcaggtggca	17	12	2	0	rs191062711	by1000genomes;alternate_allele	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	IL12RB1	NM_005535	exon10	c.C1160A	p.A387E	TGCGGCGCAGTCA		39	4	0.1	31	1	0.0322580645		92		0	0					T	18180385	G	T	18180385	3	4	117	1	0	0	0	0	1	0	0	0	7669	1087	38	1	860	1	IL12RB1	19	18180385	Missense_Mutation	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10	10369964	18180385	40948598	49	8599											
ATP4A	495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	36050035	36050035	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaatgtctccaccgcctccAggttcttgaccacgcagttc	7	17	2	1	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_000704	exon8	c.T1115C	p.L372P	GCCTCCAGGTTCT		97	13	0.13	89	0	0				1	0	0				G	36050035	A	G	36050035	3	3	117	1	0	0	0	0	1	0	0	0	1144	188	7	4	2052	4	ATP4A	19	36050035	Missense_Mutation	SNP	A	TCGA-XE-AAO3-01A-11D-A435-10	17869650	36050035	23078948	50	8600											
HAUS5	23354	mdanderson.org	37	chr19	36104635	36104635	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acacactgtccccacaggctGtgtctgggccagggggctga	14	13	1	1	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_015302	exon2	c.G102T	p.L34L	CAGGCTGTGTCTG		56	4	0.07	42	0	0				124	0	0				T	36104635	G	T	36104635	2	4	117	1	0	0	0	0	0	0	0	1	7009	1364	48	3		3	HAUS5	19	36104635	Silent	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10	54600	36104635	23024348	51	8601											
MLL4	8085	mdanderson.org	37	chr19	36212614	36212614	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccttgccgctgtctggggtaGaggagaagatgttcagcctc	14	10	2	3	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_014727	exon3	c.G2365T	p.E789X	GGGGTAGAGGAGA		48	3	0.06	63	0	0				88	0	0				T	36212614	G	T	36212614	4	4	117	1	0	0	0	0	0	1	0	0	9670	943	33	3	2375	3	MLL4	19	36212614	Nonsense_Mutation	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10	107979	36212614	22916369	52	8602											
LIPE	3991	mdanderson.org	37	chr19	42906128	42906128	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagggtcaggaagccgtgcgGcaggtcctccaccacgcgca	14	14	1	0	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_005357	exon10	c.C3067A	p.P1023T	CGTGCGGCAGGTC		17	2	0.12	21	0	0				12	0	0				T	42906128	G	T	42906128	3	4	117	1	0	0	0	0	1	0	0	0	8861	1203	42	2	167	2	LIPE	19	42906128	Missense_Mutation	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10	6693514	42906128	16222855	53	8603											
SYMPK	8189	broad.mit.edu	37	chr19	46332317	46332317	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agggagcccgaggcacctgcGgccaggtaggcgttgtactc	16	12	0	0	rs373014308	alternate_allele	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	SYMPK,colon,carcinoma,0,3	SYMPK	NM_004819	exon14	c.C1896A	p.A632A	ACCTGCGGCCAGG		226	6	0.03	190	1	0.0052631579		104	3	202	0	0				T	46332317	G	T	46332317	2	4	117	1	0	0	0	0	0	0	0	1	15495	1103	39	1		1	SYMPK	19	46332317	Silent	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10	3426189	46332317	12796666	54	8604											
IL4I1	259307	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr19	50397675	50397675	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgtgttcttgtcgtactgGgtgaacttggtcaggttgag	14	7	2	2	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_172374	exon7	c.C483A	p.T161T	GTACTGGGTGAAC		100	5	0.05	122	0	0				56	0	0				T	50397675	G	T	50397675	2	4	117	1	0	0	0	0	0	0	0	1	7740	1219	43	3		3	IL4I1	19	50397675	Silent	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10	4065358	50397675	8731308	55	8605											
SLC4A11	83959	mdanderson.org	37	chr20	3209870	3209870	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgactggatctgcgccatcGcaaaggggctctcgctgggg	16	12	2	0	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001174090	exon16	c.C2018T	p.A673V	GCCATCGCAAAGG		47	3	0.06	66	0	0				39	0	0				A	3209870	G	A	3209870	3	1	117	1	0	0	0	0	1	0	0	0	14706	1087	38	1	758	1	SLC4A11	20	3209870	Missense_Mutation	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10		3209870	59815650	56	8606											
ZBED4	9889	mdanderson.org	37	chr22	50279862	50279862	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggtgcagaacctgctgaGcctcgcccggaagatctgcg	14	12	1	3	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	ZBED4,NS,carcinoma,+1,2	ZBED4	NM_014838	exon2	c.G2552T	p.S851I	TGCTGAGCCTCGC		50	3	0.06	57	0	0		1	2	26	0	0				T	50279862	G	T	50279862	3	4	117	1	0	0	0	0	1	0	0	0	17578	971	34	2	2554	2	ZBED4	22	50279862	Missense_Mutation	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10		50279862	1024704	57	8607											
STAG2	10735	mdanderson.org	37	chrX	123191755	123191755	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccagaggaggatggaatgatGaaaagaagaggaagacaagg	16	3	0	6	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001042749	exon15	c.G1344T	p.M448I	AATGATGAAAAGA		129	5	0.04	64	0	0				173	0	0				T	123191755	G	T	123191755	3	4	117	1	0	0	0	0	1	0	0	0	15298	1290	45	3	1394	3	STAG2	23	123191755	Missense_Mutation	SNP	G	TCGA-XE-AAO3-01A-11D-A435-10		123191755	32078805	58	8608											
PUM1	9698	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	31441219	31441219	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	acctggcatgcctgctgccaGaccttgtccaaatgcaaggg	11	13	0	1	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	PUM1	NM_014676	exon11	c.C1627T	p.L543L	CTGCCAGACCTTG		95	13	0.14	129	1	0.007751938		107		8	3	0.38				A	31441219	G	A	31441219	2	1	118	1	0	0	0	0	0	0	0	1	12876	933	33	3		3	PUM1	1	31441219	Silent	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10		31441219	217809402	1	8609											
NOTCH2	4853	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	120468323	120468323	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacagcctgactcgcagtcCcggggactggggcagaagca	15	13	0	2	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	NOTCH2	NM_024408	exon25	c.G4116A	p.R1372R	GCAGTCCCGGGGA		126	25	0.2	149	1	0.0067114094		348		3	0	0				T	120468323	C	T	120468323	2	4	118	1	0	0	0	0	0	0	0	1	10594	610	22	3		3	NOTCH2	1	120468323	Silent	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10	89027104	120468323	128782298	2	8610											
MRPL9	51686	broad.mit.edu	37	chr1	151735988	151735988	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agaatgagacctgagggaggAccccggcgtcggcggcagga	18	10	0	3	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	MRPL9	.	.	.	.	GGGAGGACCCCGG		58	18	0.31	82	16	0.1951219512		21		1	0	0				C	151735988	A	C	151735988	2	2	118	1	0	0	0	0	0	0	0	1	9868	290	10	4		4	MRPL9	1	151735988	Silent	SNP	A	TCGA-XE-AAO4-01A-11D-A435-10	31267665	151735988	97514633	3	8611											
NME7	29922	broad.mit.edu	37	chr1	169272390	169272390	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attaaggacctacttgaaaaAgggtcttgactggtgatcta	10	6	2	3	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	NME7,NS,carcinoma,0,1	NME7	NM_013330	exon5	c.T433C	p.F145L	TGAAAAAGGGTCT		522	6	0.01	474	0	0		34	1	19	0	0				G	169272390	A	G	169272390	3	3	118	1	0	0	0	0	1	0	0	0	10542	72	3	4	729	4	NME7	1	169272390	Missense_Mutation	SNP	A	TCGA-XE-AAO4-01A-11D-A435-10	17536402	169272390	79978231	4	8612											
FMOD	2331	broad.mit.edu	37	chr1	203317121	203317121	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtacttgaggttgcgattgTcacagtacatggccgtgggg	16	7	1	1	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	FMOD	NM_002023	exon2	c.A278G	p.D93G	CGATTGTCACAGT		133	3	0.02	141	0	0		49		5	0	0				C	203317121	T	C	203317121	3	2	118	1	0	0	0	0	1	0	0	0	5991	1667	58	4	860	4	FMOD	1	203317121	Missense_Mutation	SNP	T	TCGA-XE-AAO4-01A-11D-A435-10	34044731	203317121	45933500	5	8613											
IKBKE	9641	mdanderson.org	37	chr1	206651589	206651589	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcttcgaccagttctttgCggagaccagtgacatcctgc	12	12	1	2	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_014002	exon9	c.C899T	p.A300V	TCTTTGCGGAGAC		53	3	0.06	72	0	0				11	0	0				T	206651589	C	T	206651589	3	4	118	1	0	0	0	0	1	0	0	0	7655	768	27	1	925	1	IKBKE	1	206651589	Missense_Mutation	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10	3334468	206651589	42599032	6	8614											
CR1	1378	broad.mit.edu	37	chr1	207751172	207751172	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	attccttgtgggctacccccAaccatcgccaatggagattt	8	13	0	1	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	CR1_ENST00000367049,NS,carcinoma,+2,2	CR1	NM_000651	exon29	c.A4560C	p.P1520P	ACCCCCAACCATC		487	4	0.01	526	0	0		354	2	0	0					C	207751172	A	C	207751172	2	2	118	1	0	0	0	0	0	0	0	1	3863	117	5	4		4	CR1	1	207751172	Silent	SNP	A	TCGA-XE-AAO4-01A-11D-A435-10	1099583	207751172	41499449	7	8615											
NVL	4931	hgsc.bcm.edu	37	chr1	224514122	224514122	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctttgtaaatcagacgctaaGactccaatgtccacatattt	5	10	1	2	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_001243147	exon2	c.C102A	p.V34V	CGCTAAGACTCCA		94	5	0.05	125	0	0				7	0	0				T	224514122	G	T	224514122	2	4	118	1	0	0	0	0	0	0	0	1	10827	929	33	3		3	NVL	1	224514122	Silent	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	16762950	224514122	24736499	8	8616											
OBSCN	84033	broad.mit.edu;mdanderson.org	37	chr1	228505368	228505368	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtggatggcctggcccccGgggagacctaccgcttccgt	15	14	0	1	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	OBSCN	NM_001271223	exon63	c.G16636C	p.G5546R	GCCCCCGGGGAGA		54	4	0.07	69	0	0		2142		1	0	0				C	228505368	G	C	228505368	3	2	118	1	0	0	0	0	1	0	0	0	10859	1116	39	5	13967	5	OBSCN	1	228505368	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	3991246	228505368	20745253	9	8617											
FMN2	56776	mdanderson.org	37	chr1	240256211	240256211	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gggaggccccgggcagtccgGacaccgagcaggcgctgtcc	17	15	0	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_020066	exon1	c.G802T	p.D268Y	AGTCCGGACACCG		9	2	0.22	14	0	0				6	2	0.33				T	240256211	G	T	240256211	3	4	118	1	0	0	0	0	1	0	0	0	5982	1174	41	3	804	3	FMN2	1	240256211	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	11750843	240256211	8994410	10	8618											
AFTPH	54812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	64778749	64778749	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtgtagggtttgttgatttCgatacaccagattatactcg	11	6	0	2	rs113401509	bycluster;byfrequency;by1000genomes	TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	AFTPH_ENST00000238855,NS,carcinoma,0,2	AFTPH_ENST00000238855	NM_017657	exon2	c.C141A	p.F47L	TGATTTCGATACA		185	18	0.1	221	0	0	0.001	0	2	2	0	0				A	64778749	C	A	64778749	3	1	118	1	0	0	0	0	1	0	0	0	363	883	31	1	143	1	AFTPH	2	64778749	Missense_Mutation	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10		64778749	178420624	11	8619											
EXOC6B	23233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	72968493	72968493	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gttatagagtccacaaagccCtggtaatgaaagttgcacat	9	8	0	2	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_015189	exon2	c.G219C	p.Q73H	AAAGCCCTGGTAA		171	37	0.22	171	0	0				3	1	0.33				G	72968493	C	G	72968493	3	3	118	1	0	0	0	0	1	0	0	0	5336	680	24	5	2300	5	EXOC6B	2	72968493	Missense_Mutation	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10	8189744	72968493	170230880	12	8620											
HS6ST1	9394	broad.mit.edu	37	chr2	129025861	129025861	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctcgcggctcctcaggcGctgctccctgcgctccagct	10	20	1	0	rs372735853		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	HS6ST1,NS,carcinoma,+1,2	HS6ST1	NM_004807	exon2	c.C1111T	p.R371C	TCAGGCGCTGCTC		123	3	0.02	201	0	0		31	2	4	0	0				A	129025861	G	A	129025861	3	1	118	1	0	0	0	0	1	0	0	0	7410	1087	38	1	128	1	HS6ST1	2	129025861	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	56057368	129025861	114173512	13	8621											
SDPR	8436	broad.mit.edu	37	chr2	192700837	192700837	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgtccatccccgagttacTccccctggaggtcgccttct	9	17	1	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	SDPR	NM_004657	exon2	c.A1090G	p.S364G	AGTTACTCCCCCT		188	5	0.03	178	1	0.0056179775		67		8	0	0				C	192700837	T	C	192700837	3	2	118	1	0	0	0	0	1	0	0	0	14023	1551	54	4	191	4	SDPR	2	192700837	Missense_Mutation	SNP	T	TCGA-XE-AAO4-01A-11D-A435-10	63674976	192700837	50498536	14	8622											
ADAM23	8745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	207432037	207432037	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcctgccttttcaacagGccaacaaaggttagtaactt	9	10	1	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_003812	exon15	c.G1485T	p.R495S	CAACAGGCCAACA		162	21	0.13	115	0	0				56	9	0.16				T	207432037	G	T	207432037	3	4	118	1	0	0	0	0	1	0	0	0	244	1194	42	2	1543	2	ADAM23	2	207432037	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	14731200	207432037	35767336	15	8623											
THAP4	51078	mdanderson.org	37	chr2	242545856	242545856	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcccagcatccaggacaGtggctccaccactgggttca	12	14	1	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_015963	exon3	c.C1273A	p.L425M	AGGACAGTGGCTC		41	3	0.07	78	0	0				119	1	0.01				T	242545856	G	T	242545856	3	4	118	1	0	0	0	0	1	0	0	0	15905	1020	36	3	476	3	THAP4	2	242545856	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	35113819	242545856	653517	16	8624											
PTPN23	25930	mdanderson.org	37	chr3	47453110	47453110	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacagctgctgacttctgGctcatggtccatgagcagaa	12	11	2	3	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_015466	exon20	c.G3822T	p.W1274C	CTTCTGGCTCATG		40	3	0.08	44	0	0				32	0	0				T	47453110	G	T	47453110	3	4	118	1	0	0	0	0	1	0	0	0	12839	1212	42	2	3900	2	PTPN23	3	47453110	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10		47453110	150569320	17	8625											
PSMD6	9861	bcgsc.ca;mdanderson.org	37	chr3	64008194	64008194	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caaggcttcatagtaaggagCcatgtctaacatgcaaaaag	9	8	2	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	PSMD6	NM_001271779	exon3	c.G310A	p.A104T	AAGGAGCCATGTC		92	5	0.05	126	0	0		30		148	0	0				T	64008194	C	T	64008194	3	4	118	1	0	0	0	0	1	0	0	0	12750	739	26	2	1046	2	PSMD6	3	64008194	Missense_Mutation	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10	16555084	64008194	134014236	18	8626											
YTHDC1	91746	broad.mit.edu	37	chr4	69202915	69202915	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcctcctcctcctcttccTcctcctcctcttcctcctcc	0	26	2	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	YTHDC1	NM_001031732	exon4	c.A713T	p.E238V	TCTTCCTCCTCCT		85	5	0.06	127	1	0.0078740157		81		5	0	0				A	69202915	T	A	69202915	3	1	118	1	0	0	0	0	1	0	0	0	17555	1551	54	5	1526	5	YTHDC1	4	69202915	Missense_Mutation	SNP	T	TCGA-XE-AAO4-01A-11D-A435-10		69202915	121951361	19	8627											
CYP2U1	113612	mdanderson.org	37	chr4	108853256	108853256	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttcagcgaccgcccgcggGtgccgctcatctccatcgtg	11	17	4	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_183075	exon1	c.G457A	p.V153M	CCGCGGGTGCCGC		33	3	0.09	50	0	0				0	0					A	108853256	G	A	108853256	3	1	118	1	0	0	0	0	1	0	0	0	4198	1261	44	3	459	3	CYP2U1	4	108853256	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	39650341	108853256	82301020	20	8628											
ARRDC3	57561	mdanderson.org	37	chr5	90667229	90667229	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttccttcaacgagagggGcaggatggtctatcatctgc	13	9	4	1	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_020801	exon8	c.C1233A	p.C411X	AGAGGGGCAGGAT		43	3	0.07	62	0	0				6	0	0				T	90667229	G	T	90667229	4	4	118	1	0	0	0	0	0	1	0	0	983	1195	42	2	15	2	ARRDC3	5	90667229	Nonsense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10		90667229	90248031	21	8629											
H2AFY	9555	mdanderson.org	37	chr5	134678955	134678955	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcatgtgcccctacctgccGctgccgatggatggaaatgc	12	13	0	0	rs149002266	bycluster;byfrequency;by1000genomes	TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_138610	exon8	c.C948T	p.S316S	CCTGCCGCTGCCG		35	3	0.09	51	0	0	0.002			470	0	0				A	134678955	G	A	134678955	2	1	118	1	0	0	0	0	0	0	0	1	6969	1078	38	1		1	H2AFY	5	134678955	Silent	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	44011726	134678955	46236305	22	8630											
CDC25C	995	mdanderson.org	37	chr5	137622859	137622859	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccacaatgtcgtctcaccTggatgtgtcctcccagatac	9	14	1	1	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_001790	exon11	c.A1025G	p.Q342R	CTCACCTGGATGT		55	3	0.05	80	0	0				28	0	0				C	137622859	T	C	137622859	3	2	118	1	0	0	0	0	1	0	0	0	3086	1594	55	4	412	4	CDC25C	5	137622859	Missense_Mutation	SNP	T	TCGA-XE-AAO4-01A-11D-A435-10	2943904	137622859	43292401	23	8631											
ATP10B	23120	mdanderson.org	37	chr5	160114833	160114833	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgctcaaagagattccgGggcaggaaggtgaagagggt	16	5	1	3	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_025153	exon5	c.C249A	p.P83P	ATTCCGGGGCAGG		121	5	0.04	210	0	0				0	0					T	160114833	G	T	160114833	2	4	118	1	0	0	0	0	0	0	0	1	1116	1219	43	3		3	ATP10B	5	160114833	Silent	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	22491974	160114833	20800427	24	8632											
ABCF1	23	broad.mit.edu	37	chr6	30557690	30557690	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctaccaggatgcccgcaaGtgcctgggccgcttcggcct	12	17	0	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	ABCF1	NM_001025091	exon22	c.G2172T	p.K724N	CCGCAAGTGCCTG		60	3	0.05	87	0	0		61		140	0	0				T	30557690	G	T	30557690	3	4	118	1	0	0	0	0	1	0	0	0	65	1020	36	3	2258	3	ABCF1	6	30557690	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10		30557690	140557377	25	8633											
TMEM63B	55362	mdanderson.org	37	chr6	44114585	44114585	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tacatgaactgtgtttcaggGaagcctaccccaactgcaca	8	12	1	1	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_018426	exon11	c.G784T	p.E262X	TTCAGGGAAGCCT		78	6	0.08	106	0	0				34	0	0				T	44114585	G	T	44114585	4	4	118	1	0	0	0	0	0	1	0	0	16250	1188	41	3	822	3	TMEM63B	6	44114585	Nonsense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	13556895	44114585	127000482	26	8634											
FAM83B	222584	broad.mit.edu	37	chr6	54806078	54806078	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccccaagttttttgaaaaAggggtctcagaagttaaggt	10	6	1	2	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	FAM83B,right_upper_lobe,carcinoma,0,1	FAM83B	NM_001010872	exon5	c.A2309G	p.K770R	TGAAAAAGGGGTC		166	4	0.02	181	1	0.0055248619		186	1	0	0					G	54806078	A	G	54806078	3	3	118	1	0	0	0	0	1	0	0	0	5665	72	3	4	2323	4	FAM83B	6	54806078	Missense_Mutation	SNP	A	TCGA-XE-AAO4-01A-11D-A435-10	10691493	54806078	116308989	27	8635											
NPC1L1	29881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	44555488	44555488	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggttgaggcggaagaagaagAtctgaatgagctgggccttg	17	5	1	6	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_013389	exon19	c.T3791A	p.I1264N	AAGAAGATCTGAA		87	14	0.16	108	0	0				0	0					T	44555488	A	T	44555488	3	4	118	1	0	0	0	0	1	0	0	0	10617	333	12	5	296	5	NPC1L1	7	44555488	Missense_Mutation	SNP	A	TCGA-XE-AAO4-01A-11D-A435-10		44555488	114583175	28	8636											
GTF2I	2969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	74105442	74105442	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaaagattttgtaaaataTtgtaagcattgtatttttat	5	2	0	1	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_032999	exon3	c.T237C	p.Y79Y	AAAATATTGTAAG		235	27	0.11	236	0	0				42	6	0.14				C	74105442	T	C	74105442	2	2	118	1	0	0	0	0	0	0	0	1	6907	1507	52	4		4	GTF2I	7	74105442	Silent	SNP	T	TCGA-XE-AAO4-01A-11D-A435-10	29549954	74105442	85033221	29	8637											
PVRIG	79037	mdanderson.org	37	chr7	99818409	99818409	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctaggctccagccgtcccGcaccagcccccaggcaccga	9	22	0	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_024070	exon5	c.G623T	p.R208L	CGTCCCGCACCAG		38	3	0.08	40	0	0				58	0	0				T	99818409	G	T	99818409	3	4	118	1	0	0	0	0	1	0	0	0	12889	1087	38	1	637	1	PVRIG	7	99818409	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	25712967	99818409	59320254	30	8638											
MDFIC	29969	broad.mit.edu	37	chr7	114582420	114582420	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgcaagaccagtccatttGgggaaatccttcggatggtg	13	8	0	1	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	MDFIC,NS,carcinoma,-1,1	MDFIC	NM_199072	exon3	c.G512T	p.W171L	CCATTTGGGGAAA		538	6	0.01	518	1	0.0019305019		30	1	2	0	0				T	114582420	G	T	114582420	3	4	118	1	0	0	0	0	1	0	0	0	9454	1357	47	3	564	3	MDFIC	7	114582420	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	14764011	114582420	44556243	31	8639											
TOP1MT	116447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	144406735	144406735	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaagctgccagccacgtgaCggtgttatcggagcgcacct	12	14	0	1	rs200437445	bycluster	TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	TOP1MT,right_lower_lobe,carcinoma,0,1	TOP1MT	NM_052963	exon6	c.G736A	p.V246I	ACGTGACGGTGTT		74	8	0.11	87	0	0	0.001	0	1	56	13	0.23				T	144406735	C	T	144406735	3	4	118	1	0	0	0	0	1	0	0	0	16424	536	19	1	1105	1	TOP1MT	8	144406735	Missense_Mutation	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10		144406735	1957287	32	8640											
ZNF251	90987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	145948392	145948392	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaggtctgaattatatttgAaggttttgctgcatatatca	8	4	2	2	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_138367	exon5	c.T653C	p.F218S	TATTTGAAGGTTT		206	27	0.13	215	0	0				10	1	0.1				G	145948392	A	G	145948392	3	3	118	1	0	0	0	0	1	0	0	0	17853	246	9	4	1366	4	ZNF251	8	145948392	Missense_Mutation	SNP	A	TCGA-XE-AAO4-01A-11D-A435-10	1541657	145948392	415630	33	8641											
HAUS6	54801	broad.mit.edu	37	chr9	19094323	19094323	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaatacttacagaaatccTttttatccattcacagcaat	3	9	1	2	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	HAUS6	NM_017645	exon3	c.A295G	p.R99G	AAATCCTTTTTAT		544	4	0.01	684	1	0.0014619883		66		5	0	0				C	19094323	T	C	19094323	3	2	118	1	0	0	0	0	1	0	0	0	7010	1608	56	4	2632	4	HAUS6	9	19094323	Missense_Mutation	SNP	T	TCGA-XE-AAO4-01A-11D-A435-10		19094323	122119108	34	8642											
NFX1	4799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	33344183	33344183	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gagtccatgagtgtgaccatCcaggtgagtaccaacttgtc	11	10	0	3	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_147134	exon14	c.C2341T	p.P781S	GACCATCCAGGTG		120	24	0.2	156	0	0				50	18	0.36				T	33344183	C	T	33344183	3	4	118	1	0	0	0	0	1	0	0	0	10433	855	30	3	2395	3	NFX1	9	33344183	Missense_Mutation	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10	14249860	33344183	107869248	35	8643											
ALDH1B1	219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	38395924	38395924	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcccgacggtcaaccctaCcaccggggaggtcattgggc	12	15	2	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_000692	exon2	c.C179A	p.T60N	ACCCTACCACCGG		41	8	0.2	51	0	0				4	0	0				A	38395924	C	A	38395924	3	1	118	1	0	0	0	0	1	0	0	0	490	507	18	3	181	3	ALDH1B1	9	38395924	Missense_Mutation	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10	5051741	38395924	102817507	36	8644											
TMOD1	7111	mdanderson.org	37	chr9	100325015	100325015	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccttcccttgtccctgcagcGatcctgggcatgcacacgct	9	17	0	0	rs199728770	bycluster;alternate_allele	TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_001166116	exon5	c.G399T	p.A133A	TGCAGCGATCCTG		53	3	0.06	70	0	0				42	0	0				T	100325015	G	T	100325015	2	4	118	1	0	0	0	0	0	0	0	1	16292	1072	37	1		1	TMOD1	9	100325015	Silent	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	61929091	100325015	40888416	37	8645											
OR5C1	392391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	125551981	125551981	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agccgtggccatgatgtacgGgacactcattttcatgtacc	10	11	2	1	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	OR5C1,NS,carcinoma,-1,1	OR5C1	NM_001001923	exon1	c.G770A	p.G257E	TGTACGGGACACT		81	9	0.11	130	1	0.0076923077		-1	1	0	0					A	125551981	G	A	125551981	3	1	118	1	0	0	0	0	1	0	0	0	11199	1232	43	3	772	3	OR5C1	9	125551981	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	25226966	125551981	15661450	38	8646											
DNM1	1759	mdanderson.org	37	chr9	130965794	130965794	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatcccgctggtcaaccgGctgcaagacgccttctctgc	9	17	3	1	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	CAACCGGCTGCAA		33	3	0.09	28	0	0				0	0					T	130965794	G	T	130965794	2	4	118	1	0	0	0	0	0	0	0	1	4697	1190	42	2		2	DNM1	9	130965794	Silent	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	5413813	130965794	10247637	39	8647											
PRKCDBP	112464	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	6340567	6340567	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaggcggcttgaccggggtGggcggtggcgctgcagggcc	22	11	0	1	rs144522181	bycluster;byfrequency;alternate_allele	TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	PRKCDBP	NM_145040	exon2	c.C612A	p.P204P	CGGGGTGGGCGGT		46	5	0.11	59	0	0		19		38	0	0				T	6340567	G	T	6340567	2	4	118	1	0	0	0	0	0	0	0	1	12561	1335	47	3		3	PRKCDBP	11	6340567	Silent	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10		6340567	128665949	40	8648											
MRPL17	63875	mdanderson.org	37	chr11	6703420	6703420	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctttgcctgaggtcctgccGcaaaccctgcagcagctggt	12	14	0	1	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_022061	exon3	c.C457T	p.R153W	CCTGCCGCAAACC		132	5	0.04	172	0	0				855	2	0				A	6703420	G	A	6703420	3	1	118	1	0	0	0	0	1	0	0	0	9830	1086	38	1	74	1	MRPL17	11	6703420	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	362853	6703420	128303096	41	8649											
KDM2A	22992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr11	66948811	66948811	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	attttaatgtagagtatattCagcggggtggcttgagagat	13	3	1	3	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_012308	exon4	c.C202T	p.Q68X	TATATTCAGCGGG		99	19	0.19	143	0	0				5	1	0.2				T	66948811	C	T	66948811	4	4	118	1	0	0	0	0	0	1	0	0	8167	827	29	3	212	3	KDM2A	11	66948811	Nonsense_Mutation	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10	60245391	66948811	68057705	42	8650											
MRGPRF	116535	mdanderson.org	37	chr11	68772840	68772840	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcagcgccgtcccgcaggGcccgctggaagaccaccctg	13	18	1	1	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_001098515	exon3	c.C938A	p.A313D	CGCAGGGCCCGCT		18	3	0.17	28	0	0				2	0	0				T	68772840	G	T	68772840	3	4	118	1	0	0	0	0	1	0	0	0	9813	1203	42	2	97	2	MRGPRF	11	68772840	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	1824029	68772840	66233676	43	8651											
GPR19	2842	broad.mit.edu	37	chr12	12815307	12815307	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtttcagtgcagctgcGgttttggaggggcaccagaa	16	8	1	1	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	GPR19,NS,carcinoma,+1,1	GPR19	NM_006143	exon4	c.C76A	p.R26S	AGCTGCGGTTTTG		201	4	0.02	147	0	0		47	1	6	0	0				T	12815307	G	T	12815307	3	4	118	1	0	0	0	0	1	0	0	0	6718	1116	39	1	1175	1	GPR19	12	12815307	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10		12815307	121036588	44	8652											
PTPRO	5800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	15722430	15722430	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ataaattttctcttcagtttGaggtgagttggttaaggcat	10	4	2	2	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_030667	exon19	c.G2827C	p.E943Q	CAGTTTGAGGTGA		1415	137	0.1	1236	1	0.0008090615				0	0					C	15722430	G	C	15722430	3	2	118	1	0	0	0	0	1	0	0	0	12860	1291	45	5	2901	5	PTPRO	12	15722430	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	2907123	15722430	118129465	45	8653											
SOCS2	8835	mdanderson.org	37	chr12	93966744	93966744	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccagtgggggaccgcggGgtcggcggaggagccatccc	20	12	0	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_001270469	exon2	c.G71T	p.G24V	CCGCGGGGTCGGC		51	3	0.06	37	0	0				19	0	0				T	93966744	G	T	93966744	3	4	118	1	0	0	0	0	1	0	0	0	14967	1232	43	3	73	3	SOCS2	12	93966744	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	78244314	93966744	39885151	46	8654											
TRIM13	10206	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr13	50589360	50589360	+	RNA	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctatttgatgtctatcttcaGatatattggcagttttcctt	6	7	3	2	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	TCTTCAGATATAT		81	17	0.21	128	0	0				2	0	0				T	50589360	G	T	50589360	1	4	118	0	1	0	0	0	0	0	0	0	16548	957	33	3		3	TRIM13	13	50589360	RNA	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10		50589360	64580518	47	8655											
ADAM21	8747	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr14	70925910	70925910	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttttgtgggagagttcaatGtgagaatgtgagagacattc	13	4	1	4	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_003813	exon2	c.G1694A	p.C565Y	TTCAATGTGAGAA		193	35	0.18	268	0	0				0	0					A	70925910	G	A	70925910	3	1	118	1	0	0	0	0	1	0	0	0	242	1377	48	3	1696	3	ADAM21	14	70925910	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10		70925910	36423630	48	8656											
ACOT4	122970	broad.mit.edu	37	chr14	74059005	74059005	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgctggacggccacgacccCgagcctggacggctgctgtg	16	14	0	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	ACOT4	NM_152331	exon1	c.C342G	p.P114P	CGACCCCGAGCCT		37	4	0.11	41	1	0.0243902439		25		0	0					G	74059005	C	G	74059005	2	3	118	1	0	0	0	0	0	0	0	1	153	639	23	5		5	ACOT4	14	74059005	Silent	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10	3133095	74059005	33290535	49	8657											
SNW1	22938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	78197400	78197400	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ggccatttctctaagtttctCttcatgtttttccttttctt	4	10	4	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_012245	exon10	c.G964C	p.E322Q	GTTTCTCTTCATG		85	16	0.19	127	0	0				303	103	0.34				G	78197400	C	G	78197400	3	3	118	1	0	0	0	0	1	0	0	0	14932	922	32	5	666	5	SNW1	14	78197400	Missense_Mutation	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10	4138395	78197400	29152140	50	8658											
RPS6KA5	9252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	91366534	91366534	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aattgaaaaactaccttctcCcaggggtttgtccttcaaat	6	10	2	1	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_182398	exon11	c.G1297C	p.G433R	CTTCTCCCAGGGG		134	21	0.16	169	0	0				11	3	0.27				G	91366534	C	G	91366534	3	3	118	1	0	0	0	0	1	0	0	0	13705	632	22	5	1145	5	RPS6KA5	14	91366534	Missense_Mutation	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10	13169134	91366534	15983006	51	8659											
FAM173A	65990	mdanderson.org	37	chr16	771876	771876	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggctggtggcgctggcgCggctgcacgcctggagggcc	19	14	0	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_023933	exon3	c.C343T	p.R115W	CTGGCGCGGCTGC		12	2	0.17	21	0	0				61	1	0.02				T	771876	C	T	771876	3	4	118	1	0	0	0	0	1	0	0	0	5522	759	27	1	353	1	FAM173A	16	771876	Missense_Mutation	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10		771876	89582877	52	8660											
CD2BP2	10421	ucsc.edu	37	chr16	30365078	30365078	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agctgtcctcctcctccgagTctgaggcctggcgctggcca	12	16	1	1	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	CD2BP2	NM_006110	exon5	c.A419G	p.D140G	TCCGAGTCTGAGG		24	3	0.13	39	0	0		30		137	35	0.26				C	30365078	T	C	30365078	3	2	118	1	0	0	0	0	1	0	0	0	3017	1667	58	4	618	4	CD2BP2	16	30365078	Missense_Mutation	SNP	T	TCGA-XE-AAO4-01A-11D-A435-10	29593202	30365078	59989675	53	8661											
SPAG7	9552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	4863123	4863123	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgctcccttgccgatgaggTggctgtacttgtccttgtag	12	11	0	1	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_004890	exon6	c.A506G	p.H169R	ATGAGGTGGCTGT		56	13	0.23	82	0	0				413	125	0.3				C	4863123	T	C	4863123	3	2	118	1	0	0	0	0	1	0	0	0	15038	1696	59	4	185	4	SPAG7	17	4863123	Missense_Mutation	SNP	T	TCGA-XE-AAO4-01A-11D-A435-10		4863123	76332087	54	8662											
EFCAB5	374786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	28382962	28382962	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgaacccaagtcccaaaaaAtagaaggaaagtcatggtca	9	8	2	2	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_198529	exon11	c.A2251C	p.I751L	CAAAAAATAGAAG		116	21	0.18	187	0	0				0	0					C	28382962	A	C	28382962	3	2	118	1	0	0	0	0	1	0	0	0	4964	101	4	4	2293	4	EFCAB5	17	28382962	Missense_Mutation	SNP	A	TCGA-XE-AAO4-01A-11D-A435-10	23519839	28382962	52812248	55	8663											
LIG3	3980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	33310332	33310332	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctatgccaagcgtggcacagCtggctgcaaaaaatgcaagg	12	10	0	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_013975	exon2	c.C308T	p.A103V	GCACAGCTGGCTG		136	20	0.15	189	0	0				6	0	0				T	33310332	C	T	33310332	3	4	118	1	0	0	0	0	1	0	0	0	8821	797	28	2	310	2	LIG3	17	33310332	Missense_Mutation	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10	4927370	33310332	47884878	56	8664											
ARSG	22901	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	66339899	66339899	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agaccaccttggcagaggtgCtgcagcaggcgggttacgtc	15	11	0	2	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	ARSG	NM_001267727	exon3	c.C373G	p.L125V	GAGGTGCTGCAGC		68	11	0.16	93	1	0.0107526882		55		3	0	0				G	66339899	C	G	66339899	3	3	118	1	0	0	0	0	1	0	0	0	991	796	28	5	379	5	ARSG	17	66339899	Missense_Mutation	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10	33029567	66339899	14855311	57	8665											
REXO1	57455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	1826917	1826917	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctccgtcttgacgctgGtggactcgttgaagatccgc	12	12	1	3	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_020695	exon2	c.C1871G	p.T624S	ACGCTGGTGGACT		176	27	0.15	278	0	0				30	5	0.17				C	1826917	G	C	1826917	3	2	118	1	0	0	0	0	1	0	0	0	13292	1261	44	5	1854	5	REXO1	19	1826917	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10		1826917	57302066	58	8666											
ATCAY	85300	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	3905468	3905468	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatttcaacggagcgcatcGtaagaggaagacgctggtgg	14	7	1	2	rs199662587	alternate_allele	TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	ATCAY	NM_033064	exon4	c.G173T	p.R58L	CGCATCGTAAGAG		101	12	0.12	155	1	0.0064516129		84		1	1	1				T	3905468	G	T	3905468	3	4	118	1	0	0	0	0	1	0	0	0	1076	1145	40	1	183	1	ATCAY	19	3905468	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	2078551	3905468	55223515	59	8667											
ICAM5	7087	mdanderson.org	37	chr19	10407206	10407206	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgctggcggggcggcaggcGcggagggcggacccgaggcg	24	12	0	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_003259	exon11	c.G2689T	p.A897S	GCAGGCGCGGAGG		21	3	0.14	11	0	0				0	0					T	10407206	G	T	10407206	3	4	118	1	0	0	0	0	1	0	0	0	7526	1087	38	1	2731	1	ICAM5	19	10407206	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	6501738	10407206	48721777	60	8668											
NWD1	284434	mdanderson.org	37	chr19	16860654	16860654	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctggcctatgggctgcccTtgccccctgcccaggttctg	12	17	1	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_001007525	exon6	c.T1201C	p.L401L	CTGCCCTTGCCCC		57	3	0.05	97	0	0				0	0					C	16860654	T	C	16860654	2	2	118	1	0	0	0	0	0	0	0	1	10828	1606	56	4		4	NWD1	19	16860654	Silent	SNP	T	TCGA-XE-AAO4-01A-11D-A435-10	6453448	16860654	42268329	61	8669											
ZNF536	9745	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	31040045	31040045	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagaggacatggactcctcCaagggggagaacaacgatga	13	9	1	3	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	ZNF536	NM_014717	exon4	c.C3519A	p.S1173S	CTCCTCCAAGGGG		103	13	0.13	127	1	0.0078740157		424		1	0	0				A	31040045	C	A	31040045	2	1	118	1	0	0	0	0	0	0	0	1	18030	581	21	3		3	ZNF536	19	31040045	Silent	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10	14179391	31040045	28088938	62	8670											
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	36224181	36224181	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccccctcctcggcgtgctgcCcgtggtcggagtggtccgcc	14	18	0	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_014727	exon28	c.C6731G	p.P2244R	TGCTGCCCGTGGT		65	14	0.22	94	0	0				23	4	0.17				G	36224181	C	G	36224181	3	3	118	1	0	0	0	0	1	0	0	0	9670	623	22	5	6841	5	MLL4	19	36224181	Missense_Mutation	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10	5184136	36224181	22904802	63	8671											
ARHGAP33	115703	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr19	36278481	36278481	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcagtgcccagctcagggCaggtggcgggggcagggatg	21	9	2	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	ARHGAP33	NM_052948	exon21	c.C2531T	p.A844V	TCAGGGCAGGTGG		46	4	0.09	97	0	0		102		17	4	0.24				T	36278481	C	T	36278481	3	4	118	1	0	0	0	0	1	0	0	0	879	710	25	2	3096	2	ARHGAP33	19	36278481	Missense_Mutation	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10	54300	36278481	22850502	64	8672											
CYP2A6	1548	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	41354213	41354213	+	Frame_Shift_Del	DEL	C	C	-													gtccttatagtcaaagcggtCcccaaagacaatggagctga					novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	CYP2A6	NM_000762	exon4	c.566delA	p.D189fs	AGCGGTCCCCAAA		130	22	0.17	150	0	0		69		0	0					-	41354213	C	-	41354213	7	5	118	1	0	1	0	1	0	0	0	0	4185	855	30	0	943	0	CYP2A6	19	41354213	Frame_Shift_Del	DEL	C	TCGA-XE-AAO4-01A-11D-A435-10	5075732	41354213	17774770	65	8673											
ZNF233	353355	ucsc.edu	37	chr19	44778739	44778739	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caagcccatcagagagtccaTactggagagaaaccatacaa	8	11	1	2	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	ZNF233	NM_001207005	exon5	c.T1926C	p.H642H	AGTCCATACTGGA		144	1	0.01	174	0	0		73		34	4	0.12				C	44778739	T	C	44778739	2	2	118	1	0	0	0	0	0	0	0	1	17843	1403	49	4		4	ZNF233	19	44778739	Silent	SNP	T	TCGA-XE-AAO4-01A-11D-A435-10	3424526	44778739	14350244	66	8674											
LENG9	94059	mdanderson.org	37	chr19	54974255	54974255	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatggtgggcccgcgtcccGccgccgagccagagccaaag	16	15	0	1	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_198988	exon1	c.C521T	p.A174V	CGTCCCGCCGCCG		23	3	0.13	12	0	0				2	0	0				A	54974255	G	A	54974255	3	1	118	1	0	0	0	0	1	0	0	0	8763	1087	38	1	988	1	LENG9	19	54974255	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	10195516	54974255	4154728	67	8675											
ZSCAN22	342945	mdanderson.org	37	chr19	58846207	58846207	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccctgagcccagtgccgtgGgaagaggacagcttccttca	12	13	1	2	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_181846	exon2	c.G39A	p.W13X	GCCGTGGGAAGAG		36	3	0.08	41	0	0				0	0					A	58846207	G	A	58846207	4	1	118	1	0	0	0	0	0	1	0	0	18274	1241	43	3	41	3	ZSCAN22	19	58846207	Nonsense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	3871952	58846207	282776	68	8676											
NRSN2	80023	mdanderson.org	37	chr20	330397	330397	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcttctatgaggactgtgCaggcactgctctcagcgacg	11	13	3	1	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_024958	exon3	c.C110T	p.A37V	ACTGTGCAGGCAC		37	3	0.08	46	0	0				61	0	0				T	330397	C	T	330397	3	4	118	1	0	0	0	0	1	0	0	0	10710	710	25	2	112	2	NRSN2	20	330397	Missense_Mutation	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10		330397	62695123	69	8677											
ASXL1	171023	mdanderson.org	37	chr20	31021114	31021114	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaccaaagaagagtcattGcagcagaacgtgggccagga	13	8	1	4	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_015338	exon11	c.G1113T	p.L371F	GTCATTGCAGCAG		56	3	0.05	69	0	0				9	0	0				T	31021114	G	T	31021114	3	4	118	1	0	0	0	0	1	0	0	0	1065	1310	46	2	1165	2	ASXL1	20	31021114	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	30690717	31021114	32004406	70	8678											
NNAT	4826	bcgsc.ca	37	chr20	36151139	36151139	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggcaggtgttgggggagcGcaggcagcgagcccccaact	18	12	0	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	NNAT	NM_005386	exon3	c.G224A	p.R75H	GGGAGCGCAGGCA		42	4	0.1	75	0	0		8		116	0	0				A	36151139	G	A	36151139	3	1	118	1	0	0	0	0	1	0	0	0	10554	1087	38	1	234	1	NNAT	20	36151139	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	5130025	36151139	26874381	71	8679											
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr20	60921757	60921757	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggcagtcgatacagacaCccccaccctgataggtgcca	9	16	0	2	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_005560	exon8	c.G1172T	p.G391V	CAGACACCCCCAC		67	8	0.12	95	0	0				0	0					A	60921757	C	A	60921757	3	1	118	1	0	0	0	0	1	0	0	0	8647	507	18	3	10207	3	LAMA5	20	60921757	Missense_Mutation	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10	24770618	60921757	2103763	72	8680											
N6AMT1	29104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	30257631	30257631	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggcgccgcggcccacgtGcccgtggaacggcgtagcga	17	14	0	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_182749	exon1	c.C37T	p.H13Y	CCACGTGCCCGTG		139	15	0.11	145	0	0				28	4	0.14				A	30257631	G	A	30257631	3	1	118	1	0	0	0	0	1	0	0	0	10161	1319	46	2	631	2	N6AMT1	21	30257631	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10		30257631	17872264	73	8681											
CLDN14	23562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	37833547	37833547	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgccgctgggcagcagcggGttgtagaagttctgcaccac	14	11	1	1	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_144492	exon3	c.C447A	p.N149K	CAGCGGGTTGTAG		72	21	0.29	75	0	0				0	0					T	37833547	G	T	37833547	3	4	118	1	0	0	0	0	1	0	0	0	3498	1252	44	3	276	3	CLDN14	21	37833547	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	7575916	37833547	10296348	74	8682											
MYO18B	84700	mdanderson.org	37	chr22	26157088	26157088	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatcacgcctcgccctgtGggagcagaaggaaagtgaca	12	12	2	2	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_032608	exon2	c.G29T	p.W10L	CCCTGTGGGAGCA		23	2	0.09	35	0	0				0	0					T	26157088	G	T	26157088	3	4	118	1	0	0	0	0	1	0	0	0	10113	1357	47	3	31	3	MYO18B	22	26157088	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10		26157088	25147478	75	8683											
MN1	4330	mdanderson.org	37	chr22	28195275	28195275	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acaggctcggaataagggtgCatgctccggttctccagccg	13	12	1	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_002430	exon1	c.G1257A	p.M419I	AGGGTGCATGCTC		16	3	0.19	22	0	0				0	0					T	28195275	C	T	28195275	3	4	118	1	0	0	0	0	1	0	0	0	9721	710	25	2	2713	2	MN1	22	28195275	Missense_Mutation	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10	2038187	28195275	23109291	76	8684											
XRCC6	2547	broad.mit.edu	37	chr22	42059649	42059649	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgaaggttctggaagcaaaAggcccaaggtggagtattca	13	6	2	1	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	XRCC6,NS,carcinoma,0,1	XRCC6	NM_001469	exon13	c.A1660G	p.R554G	AGCAAAAGGCCCA		187	4	0.02	284	1	0.0035211268		64	1	6207	2	0				G	42059649	A	G	42059649	3	3	118	1	0	0	0	0	1	0	0	0	17516	63	3	4	1706	4	XRCC6	22	42059649	Missense_Mutation	SNP	A	TCGA-XE-AAO4-01A-11D-A435-10	13864374	42059649	9244917	77	8685											
PHF21B	112885	mdanderson.org	37	chr22	45289362	45289362	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccaggaggccgctgtagGcagggttggctgtgcttctt	15	10	2	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_138415	exon7	c.C935T	p.A312V	CTGTAGGCAGGGT		47	3	0.06	55	0	0				0	0					A	45289362	G	A	45289362	3	1	118	1	0	0	0	0	1	0	0	0	11881	1203	42	2	688	2	PHF21B	22	45289362	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	3229713	45289362	6015204	78	8686											
MAPK8IP2	23542	mdanderson.org	37	chr22	51039298	51039298	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaccttccactcgctgtcGccgccgggctgcaggtaccc	10	19	0	0	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	GCTGTCGCCGCCG		39	3	0.08	45	0	0				3	0	0				T	51039298	G	T	51039298	2	4	118	1	0	0	0	0	0	0	0	1	9334	1074	38	1		1	MAPK8IP2	22	51039298	Silent	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	5749936	51039298	265268	79	8687											
PNPLA4	8228	broad.mit.edu	37	chrX	7868821	7868821	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctcttgcttgggggaaaaAgggcttggttgagtctcacc	13	9	2	1	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	PNPLA4	NM_004650	exon7	c.T668C	p.L223P	GGAAAAAGGGCTT		394	5	0.01	364	0	0		24		111	0	0				G	7868821	A	G	7868821	3	3	118	1	0	0	0	0	1	0	0	0	12214	72	3	4	97	4	PNPLA4	23	7868821	Missense_Mutation	SNP	A	TCGA-XE-AAO4-01A-11D-A435-10		7868821	147401739	80	8688											
POLA1	5422	broad.mit.edu	37	chrX	24833115	24833115	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gctttgtgattggccagattCtttctgatcaaagccgggac	11	9	3	3	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	POLA1	NM_016937	exon30	c.C3298T	p.L1100F	CAGATTCTTTCTG		51	20	0.39	53	12	0.2264150943		117		10	0	0				T	24833115	C	T	24833115	3	4	118	1	0	0	0	0	1	0	0	0	12234	913	32	3	3416	3	POLA1	23	24833115	Missense_Mutation	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10	16964294	24833115	130437445	81	8689											
SUV39H1	6839	mdanderson.org	37	chrX	48564674	48564674	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agatcattacctcagaggagGcagagcggcggggccagatc	15	10	2	4	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_003173	exon4	c.G847T	p.A283S	GAGGAGGCAGAGC		46	3	0.07	60	0	0				18	0	0				T	48564674	G	T	48564674	3	4	118	1	0	0	0	0	1	0	0	0	15467	1203	42	2	861	2	SUV39H1	23	48564674	Missense_Mutation	SNP	G	TCGA-XE-AAO4-01A-11D-A435-10	23731559	48564674	106705886	82	8690											
FAM104B	90736	mdanderson.org	37	chrX	55172645	55172645	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gaactggggaaagtttgcatCgggttcagtaacaatctggt	13	6	2	0	rs1047042	bycluster;byfrequency;alternate_allele	TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_001166700	exon3	c.G223C	p.D75H	TTGCATCGGGTTC		23	3	0.13	36	0	0				160	0	0				G	55172645	C	G	55172645	3	3	118	1	0	0	0	0	1	0	0	0	5417	884	31	5	232	5	FAM104B	23	55172645	Missense_Mutation	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10	6607971	55172645	100097915	83	8691											
ARMCX5	64860	broad.mit.edu	37	chrX	101858297	101858297	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccccttgaactcccctgtgCagctggctggactgaaatta	10	13	0	2	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	ARMCX5	NM_022838	exon3	c.C1228T	p.Q410X	CCTGTGCAGCTGG		248	4	0.02	299	0	0		55		83	0	0				T	101858297	C	T	101858297	4	4	118	1	0	0	0	0	0	1	0	0	961	711	25	2	1230	2	ARMCX5	23	101858297	Nonsense_Mutation	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10	46685652	101858297	53412263	84	8692											
MAGEC1	9947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	140994527	140994527	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagtctcctctccagattcCtgtgagctcctctttctcct	5	17	4	2	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_005462	exon4	c.C1337T	p.P446L	AGATTCCTGTGAG		234	66	0.28	267	0	0				4	0	0				T	140994527	C	T	140994527	3	4	118	1	0	0	0	0	1	0	0	0	9229	681	24	3	1343	3	MAGEC1	23	140994527	Missense_Mutation	SNP	C	TCGA-XE-AAO4-01A-11D-A435-10	39136230	140994527	14276033	85	8693											
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	44057100	44057100	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaagcacaacaccgacgcGgggctcctcacgaccgtggg	12	16	1	0	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_002840	exon9	c.G1407A	p.A469A	CGACGCGGGGCTC		36	8	0.22	36	0	0				8	2	0.25				A	44057100	G	A	44057100	2	1	119	1	0	0	0	0	0	0	0	1	12852	1103	39	1		1	PTPRF	1	44057100	Silent	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10		44057100	205193521	1	8694											
CPT2	1376	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	53676901	53676902	+	Frame_Shift_Del	DEL	GA	GA	-													gctctgaggcctttgtcaggGagccctccaggcacagtgct					novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	GA	GA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	CPT2	NM_000098	exon4	c.1554_1555del	p.518_519del	GTCAGGGAGCCCT		95	33	0.35	81	0	0		34		9	0	0				-	53676902	GA	-	53676901	7	5	119	1	0	1	0	1	0	0	0	0	3857	1175	41	0	1569	0	CPT2	1	53676901	Frame_Shift_Del	DEL	GA	TCGA-XE-AAO6-01A-31D-A435-10	9619801	53676901	195573720	2	8695											
WDR78	79819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	67313188	67313188	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttttaaaacaggaagctgacGataagctgcaagtttgggct	11	6	0	1	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_207014	exon8	c.C1270T	p.R424C	GCTGACGATAAGC		213	40	0.19	215	0	0				3	1	0.33				A	67313188	G	A	67313188	3	1	119	1	0	0	0	0	1	0	0	0	17387	1058	37	1	1373	1	WDR78	1	67313188	Missense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10	13636287	67313188	181937433	3	8696											
NRAS	4893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	115256529	115256529	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatggcactgtactcttctTgtccagctgtatccagtatg	8	11	3	0	rs11554290	bycluster;byfrequency;byhapmap	TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	NRAS,NS,haematopoietic_neoplasm,-1,2068	NRAS	NM_002524	exon3	c.A182G	p.Q61R	TCTTCTTGTCCAG		210	39	0.19	137	0	0		-1	2068	15	0	0				C	115256529	T	C	115256529	3	2	119	1	0	0	0	0	1	0	0	0	10687	1812	63	4	399	4	NRAS	1	115256529	Missense_Mutation	SNP	T	TCGA-XE-AAO6-01A-31D-A435-10	47943341	115256529	133994092	4	8697											
FLG2	388698	hgsc.bcm.edu	37	chr1	152328051	152328051	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagaggactgacctgagccTgatccatgttggccaaagct	11	12	0	4	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	FLG2,NS,carcinoma,-1,1	FLG2	NM_001014342	exon3	c.A2211G	p.S737S	TGAGCCTGATCCA		172	7	0.04	158	0	0		-1	1	0	0					C	152328051	T	C	152328051	2	2	119	1	0	0	0	0	0	0	0	1	5955	1567	55	4		4	FLG2	1	152328051	Silent	SNP	T	TCGA-XE-AAO6-01A-31D-A435-10	37071522	152328051	96922570	5	8698											
LOR	4014	broad.mit.edu	37	chr1	153233515	153233515	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggtggcggcggcagcggCggtggtggctgcggcttctt	22	10	1	0	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	LOR	NM_000427	exon2	c.C90T	p.G30G	CAGCGGCGGTGGT		102	6	0.06	68	0	0		19		0	0					T	153233515	C	T	153233515	2	4	119	1	0	0	0	0	0	0	0	1	8941	755	27	1		1	LOR	1	153233515	Silent	SNP	C	TCGA-XE-AAO6-01A-31D-A435-10	905464	153233515	96017106	6	8699											
SHE	126669	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	154461552	154461554	+	In_Frame_Del	DEL	CTT	CTT	-													agagcccgcacgatctgctcCttcttccactcccatggctg					novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	CTT	CTT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	SHE	NM_001010846	exon3	c.998_1000del	p.333_334del	CTGCTCCTTCTTC		155	24	0.15	121	0	0		41		15	0	0				-	154461554	CTT	-	154461552	7	5	119	1	0	1	0	1	0	0	0	0	14330	680	24	0	504	0	SHE	1	154461552	In_Frame_Del	DEL	CTT	TCGA-XE-AAO6-01A-31D-A435-10	1228037	154461552	94789069	7	8700											
KIRREL	55243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	157963501	157963501	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	cgtctggatcctcactctctCcgatactttctcccaaggta	6	15	4	0	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_018240	exon1	c.C35G	p.S12C	CTCTCTCCGATAC		342	44	0.13	241	0	0				0	0					G	157963501	C	G	157963501	3	3	119	1	0	0	0	0	1	0	0	0	8366	855	30	5	37	5	KIRREL	1	157963501	Missense_Mutation	SNP	C	TCGA-XE-AAO6-01A-31D-A435-10	3501949	157963501	91287120	8	8701											
ABL2	27	broad.mit.edu	37	chr1	179198478	179198478	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgccccggatcccgcgggGctgaggctgctggagccccg	17	16	0	1	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	ABL2	NM_001168238	exon1	c.C55A	p.P19T	CGCGGGGCTGAGG		98	7	0.07	61	2	0.0327868852		307		3	0	0				T	179198478	G	T	179198478	3	4	119	1	0	0	0	0	1	0	0	0	93	1203	42	2	3702	2	ABL2	1	179198478	Missense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10	21234977	179198478	70052143	9	8702											
RAB3GAP2	25782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	220340992	220340992	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtcctgtttaaatatccaCttggctacactgtctgcaat	6	10	1	0	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_012414	exon25	c.G2832A	p.K944K	TATCCACTTGGCT		211	36	0.17	175	0	0				1	0	0				T	220340992	C	T	220340992	2	4	119	1	0	0	0	0	0	0	0	1	12987	564	20	3		3	RAB3GAP2	1	220340992	Silent	SNP	C	TCGA-XE-AAO6-01A-31D-A435-10	41142514	220340992	28909629	10	8703											
FMN2	56776	broad.mit.edu	37	chr1	240371517	240371517	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ataccccctcctccccctctTcccggagcgggcatacctcc	6	22	1	0	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	FMN2,NS,carcinoma,+2,1	FMN2	NM_020066	exon5	c.T3405A	p.L1135L	CCCTCTTCCCGGA		98	7	0.07	66	2	0.0303030303		451	1	3	0	0				A	240371517	T	A	240371517	2	1	119	1	0	0	0	0	0	0	0	1	5982	1770	62	5		5	FMN2	1	240371517	Silent	SNP	T	TCGA-XE-AAO6-01A-31D-A435-10	20030525	240371517	8879104	11	8704											
KIF3C	3797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr2	26203245	26203245	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctctggggcccttaccttGtacttggccgcaagcagctc	10	15	1	0	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_002254	exon1	c.C1542G	p.Y514X	TACCTTGTACTTG		104	16	0.15	55	0	0				7	1	0.14				C	26203245	G	C	26203245	4	2	119	1	0	0	0	0	0	1	0	0	8343	1372	48	5	871	5	KIF3C	2	26203245	Nonsense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10		26203245	216996128	12	8705											
FER1L5	90342	broad.mit.edu	37	chr2	97362036	97362036	+	RNA	DEL	T	T	-													tttttttaaacttttcaatcTttttttttttgagacacagt					novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	FER1L5	.	.	.	.	TCAATCTTTTTTT		6	2	0.33	8	0	0		113		0	0					-	97362036	T	-	97362036	6	5	119	0	1	1	0	1	0	0	0	0	5846	1624	56	0		0	FER1L5	2	97362036	RNA	DEL	T	TCGA-XE-AAO6-01A-31D-A435-10	71158791	97362036	145837337	13	8706											
GPR45	11250	mdanderson.org	37	chr2	105859003	105859003	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaagaacgccgtgcgcgtgCacaaccagtcggacagcctg	13	14	0	1	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_007227	exon1	c.C688T	p.H230Y	CGCGTGCACAACC		33	3	0.09	37	0	0				0	0					T	105859003	C	T	105859003	3	4	119	1	0	0	0	0	1	0	0	0	6735	710	25	2	690	2	GPR45	2	105859003	Missense_Mutation	SNP	C	TCGA-XE-AAO6-01A-31D-A435-10	8496967	105859003	137340370	14	8707											
WDR52	55779	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr3	113115497	113115497	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccgcaaaaatcgtgagcccTtttggatcataaagttcaag	8	10	2	1	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001164496	exon14	c.A1647G	p.K549K	GAGCCCTTTTGGA		98	4	0.04	103	0	0				10	0	0				C	113115497	T	C	113115497	2	2	119	1	0	0	0	0	0	0	0	1	17363	1606	56	4		4	WDR52	3	113115497	Silent	SNP	T	TCGA-XE-AAO6-01A-31D-A435-10		113115497	84906933	15	8708											
EEFSEC	60678	mdanderson.org	37	chr3	127872594	127872594	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgaggccgagcccgagcccGgcgagccactgcttcaggtc	14	17	1	0	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_021937	exon1	c.G244C	p.G82R	GAGCCCGGCGAGC		9	1	0.11	10	0	0				7	0	0				C	127872594	G	C	127872594	3	2	119	1	0	0	0	0	1	0	0	0	4957	1116	39	5	246	5	EEFSEC	3	127872594	Missense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10	14757097	127872594	70149836	16	8709											
ZBTB38	253461	broad.mit.edu	37	chr3	141164031	141164031	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atccagacagttgaaaaaaaTgaggaaagtcaactggagga	11	5	1	3	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	ZBTB38	NM_001080412	exon8	c.T2801G	p.M934R	AAAAAATGAGGAA		176	8	0.05	163	2	0.0122699387		92		0	0					G	141164031	T	G	141164031	3	3	119	1	0	0	0	0	1	0	0	0	17597	1464	51	4	2803	4	ZBTB38	3	141164031	Missense_Mutation	SNP	T	TCGA-XE-AAO6-01A-31D-A435-10	13291437	141164031	56858399	17	8710											
USP13	8975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	179439252	179439252	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgagtgggaagtgatccaGgagtcgggcacgaaactgaa	16	6	0	3	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_003940	exon8	c.G963C	p.Q321H	GATCCAGGAGTCG		218	42	0.19	164	0	0				4	0	0				C	179439252	G	C	179439252	3	2	119	1	0	0	0	0	1	0	0	0	17103	991	35	5	993	5	USP13	3	179439252	Missense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10	38275221	179439252	18583178	18	8711											
MUC4	4585	broad.mit.edu	37	chr3	195512110	195512110	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atgaggaagcatcggtgtcaTgaagagcggtggcgtgacct	16	7	1	4	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	MUC4	NM_018406	exon2	c.A6341C	p.H2114P	GTGTCATGAAGAG		427	11	0.03	403	2	0.0049627792		1505		15	0	0				G	195512110	T	G	195512110	3	3	119	1	0	0	0	0	1	0	0	0	10025	1464	51	4		4	MUC4	3	195512110	Missense_Mutation	SNP	T	TCGA-XE-AAO6-01A-31D-A435-10	16072858	195512110	2510320	19	8712											
NR3C2	0	broad.mit.edu;mdanderson.org	37	chr4	149356894	149356894	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acttcctcagtcttaggaaaAgggacctcttgagcaccttt	8	11	3	1	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	NR3C2	NM_001166104	exon2	c.T1119C	p.P373P	AGGAAAAGGGACC		101	4	0.04	124	1	0.0080645161		94		0	0					G	149356894	A	G	149356894	2	3	119	1	0	0	0	0	0	0	0	1	10678	59	3	4		4	NR3C2	4	149356894	Silent	SNP	A	TCGA-XE-AAO6-01A-31D-A435-10		149356894	41797382	20	8713											
CHD1	1105	broad.mit.edu;mdanderson.org	37	chr5	98239547	98239547	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttgttgttgctgctgctgCtgttgctgcttcttgaggat	13	7	1	1	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	CHD1	NM_001270	exon3	c.G321A	p.Q107Q	CTGCTGCTGTTGC		60	4	0.07	62	0	0		137		2	0	0				T	98239547	C	T	98239547	2	4	119	1	0	0	0	0	0	0	0	1	3345	796	28	2		2	CHD1	5	98239547	Silent	SNP	C	TCGA-XE-AAO6-01A-31D-A435-10		98239547	82675713	21	8714											
SHROOM1	134549	mdanderson.org	37	chr5	132161737	132161737	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcggagaaagagctgtaGgccgagtccgcgcgcatgga	17	10	0	2	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_133456	exon1	c.C96A	p.A32A	GCTGTAGGCCGAG		19	3	0.16	14	0	0				5	0	0				T	132161737	G	T	132161737	2	4	119	1	0	0	0	0	0	0	0	1	14347	987	35	3		3	SHROOM1	5	132161737	Silent	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10	33922190	132161737	48753523	22	8715											
HARS2	23438	mdanderson.org	37	chr5	140071284	140071284	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctgggcttcgctgctcagCcagctcctgcgaccgccctg	12	18	1	0	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_012208	exon1	c.C51A	p.S17R	GCTCAGCCAGCTC		43	4	0.09	66	0	0				3	0	0				A	140071284	C	A	140071284	3	1	119	1	0	0	0	0	1	0	0	0	7000	738	26	2	53	2	HARS2	5	140071284	Missense_Mutation	SNP	C	TCGA-XE-AAO6-01A-31D-A435-10	7909547	140071284	40843976	23	8716											
RUFY1	80230	mdanderson.org	37	chr5	179021943	179021943	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccaaccaagttatgtccaGcatgaaacaaatggaagaaa	7	8	0	2	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_025158	exon12	c.G1490T	p.S497I	TGTCCAGCATGAA		47	3	0.06	72	0	0				29	0	0				T	179021943	G	T	179021943	3	4	119	1	0	0	0	0	1	0	0	0	13789	971	34	2	1536	2	RUFY1	5	179021943	Missense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10	38950659	179021943	1893317	24	8717											
ITPR3	3710	mdanderson.org	37	chr6	33655317	33655317	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaagcgcattcaagaggaGgaggccgagggtatctcttc	15	8	2	2	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_002224	exon46	c.G6240T	p.E2080D	AGAGGAGGAGGCC		41	3	0.07	46	0	0				40	0	0				T	33655317	G	T	33655317	3	4	119	1	0	0	0	0	1	0	0	0	7965	991	35	3	6422	3	ITPR3	6	33655317	Missense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10		33655317	137459750	25	8718											
KLC4	89953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	43034061	43034061	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tagtgtcccgtggtcaaggtGctacagcagctcagcagggt	14	10	2	0	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_201523	exon5	c.G643A	p.A215T	CAAGGTGCTACAG		69	19	0.28	95	0	0				12	7	0.58				A	43034061	G	A	43034061	3	1	119	1	0	0	0	0	1	0	0	0	8378	1319	46	2	661	2	KLC4	6	43034061	Missense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10	9378744	43034061	128081006	26	8719											
HERPUD2	64224	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	35674032	35674033	+	Frame_Shift_Ins	INS	-	-	T													ctaaaaggaaaccatccagcINSttggtgtctgttcagtaaaa					novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	HERPUD2	NM_022373	exon8	c.949_950insA	p.A317fs	ATCCAGCTTGGTG		161	25	0.16	146	0	0		47		15	0	0				T	35674033	-	T	35674032	7	5	119	1	0	1	1	0	0	0	0	0	7104	797	28	0	279	0	HERPUD2	7	35674032	Frame_Shift_Ins	INS	-	TCGA-XE-AAO6-01A-31D-A435-10		35674032	123464631	27	8720											
REPIN1	29803	mdanderson.org	37	chr7	150069937	150069937	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcatcacccaccgcaagaGccacatccgggacggcgcct	9	19	2	1	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001099695	exon3	c.G1778T	p.S593I	GCAAGAGCCACAT		46	3	0.07	41	0	0				82	0	0				T	150069937	G	T	150069937	3	4	119	1	0	0	0	0	1	0	0	0	13278	971	34	2	1784	2	REPIN1	7	150069937	Missense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10	114395905	150069937	9068726	28	8721											
TMEM176A	55365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	150501507	150501507	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctggattctgctgcttctgGcatctctgacccctctgtgg	10	13	5	1	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_018487	exon6	c.G613A	p.A205T	CTTCTGGCATCTC		94	17	0.18	102	0	0				120	1	0.01				A	150501507	G	A	150501507	3	1	119	1	0	0	0	0	1	0	0	0	16151	1203	42	2	631	2	TMEM176A	7	150501507	Missense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10	431570	150501507	8637156	29	8722											
PLEC	5339	mdanderson.org	37	chr8	144992766	144992766	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acagcctcatccacagtcagCcgctcccccttcaccgggtc	7	20	3	0	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_201380	exon32	c.G11634A	p.R3878R	AGTCAGCCGCTCC		52	3	0.06	36	0	0				64	0	0				T	144992766	C	T	144992766	2	4	119	1	0	0	0	0	0	0	0	1	12099	726	26	2		2	PLEC	8	144992766	Silent	SNP	C	TCGA-XE-AAO6-01A-31D-A435-10		144992766	1371256	30	8723											
FOLH1	2346	bcgsc.ca	37	chr11	49204790	49204790	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaattccacgcctataagcAtattctgaaaaaaaaaattg	5	8	1	1	rs76509850	bycluster;byfrequency	TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	FOLH1	NM_004476	exon7	c.T831C	p.Y277Y	ATAAGCATATTCT		183	10	0.05	216	2	0.0092592593		141		0	0					G	49204790	A	G	49204790	2	3	119	1	0	0	0	0	0	0	0	1	6011	224	8	4		4	FOLH1	11	49204790	Silent	SNP	A	TCGA-XE-AAO6-01A-31D-A435-10		49204790	85801726	31	8724											
RPS6KA4	8986	bcgsc.ca	37	chr11	64136183	64136183	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccgtcccccaggctggagGcgaacacgcagcgcgaagtg	14	15	0	0	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	RPS6KA4	NM_003942	exon12	c.G1342T	p.A448S	CTGGAGGCGAACA		44	4	0.09	56	0	0		85		16	0	0				T	64136183	G	T	64136183	3	4	119	1	0	0	0	0	1	0	0	0	13704	1203	42	2	1388	2	RPS6KA4	11	64136183	Missense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10	14931393	64136183	70870333	32	8725											
ADRBK1	156	mdanderson.org	37	chr11	67049967	67049967	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtggcctacgacagcagtGccgactggttctctctgggg	15	12	2	0	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001619	exon13	c.G1114T	p.A372S	AGCAGTGCCGACT		57	3	0.05	83	0	0				84	0	0				T	67049967	G	T	67049967	3	4	119	1	0	0	0	0	1	0	0	0	342	1319	46	2	1164	2	ADRBK1	11	67049967	Missense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10	2913784	67049967	67956549	33	8726											
SSH3	54961	mdanderson.org	37	chr11	67074850	67074850	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctcctgcaggggcttcaGcgtgacgtctggtgggcaaa	16	10	3	1	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_017857	exon6	c.G545T	p.S182I	GCTTCAGCGTGAC		47	3	0.06	56	0	0				2	0	0				T	67074850	G	T	67074850	3	4	119	1	0	0	0	0	1	0	0	0	15241	971	34	2	567	2	SSH3	11	67074850	Missense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10	24883	67074850	67931666	34	8727											
LRP5	4041	mdanderson.org	37	chr11	68174054	68174054	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcttcttcacaccccacGcaacccggtgtggctgcccc	9	18	2	0	rs147792724	alternate_allele	TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_002335	exon9	c.G1864A	p.A622T	CCCCACGCAACCC		50	3	0.06	84	0	0				2	0	0				A	68174054	G	A	68174054	3	1	119	1	0	0	0	0	1	0	0	0	9004	1087	38	1	1898	1	LRP5	11	68174054	Missense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10	1099204	68174054	66832462	35	8728											
SIAE	54414	mdanderson.org	37	chr11	124518072	124518072	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaatcgtatggaatggacCtgaaatcatatgatgcacaa	9	7	1	3	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001199922	exon9	c.618-1G>T	.	ATGGACCTGAAAT		44	3	0.07	72	0	0				2	0	0				A	124518072	C	A	124518072	5	1	119	1	0	0	0	0	0	0	1	0	14352	695	24	3	869	3	SIAE	11	124518072	Splice_Site	SNP	C	TCGA-XE-AAO6-01A-31D-A435-10	56344018	124518072	10488444	36	8729											
CACNA1C	775	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	2786957	2786957	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgacgggccatctctggagAtctcaccgctgaggaggagc	14	13	2	2	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	CACNA1C	NM_199460	exon43	c.A5159C	p.D1720A	CTGGAGATCTCAC		322	36	0.11	182	1	0.0054945055		1023		9	0	0				C	2786957	A	C	2786957	3	2	119	1	0	0	0	0	1	0	0	0	2558	333	12	4	5560	4	CACNA1C	12	2786957	Missense_Mutation	SNP	A	TCGA-XE-AAO6-01A-31D-A435-10		2786957	131064938	37	8730											
PXN	5829	mdanderson.org	37	chr12	120659500	120659500	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccgagatgcgtgtctgctGttgggtggaggtgacgcgct	19	8	1	2	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001080855	exon6	c.C757A	p.Q253K	TCTGCTGTTGGGT		36	3	0.08	39	0	0				21	0	0				T	120659500	G	T	120659500	3	4	119	1	0	0	0	0	1	0	0	0	12903	1386	48	3	1046	3	PXN	12	120659500	Missense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10	117872543	120659500	13192395	38	8731											
SCEL	8796	mdanderson.org	37	chr13	78167651	78167651	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atttttcattgtttgaaggaGtcaggatcttgataacatcg	9	5	3	2	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_144777	exon12	c.G695T	p.S232I	GAAGGAGTCAGGA		58	3	0.05	86	0	0				0	0					T	78167651	G	T	78167651	3	4	119	1	0	0	0	0	1	0	0	0	13940	1029	36	3	737	3	SCEL	13	78167651	Missense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10		78167651	37002227	39	8732											
RASL12	51285	broad.mit.edu	37	chr15	65360091	65360091	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagacttgccagccccgcggCgccccaggatggccaggttg	14	16	0	1	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	RASL12	NM_016563	exon1	c.G83T	p.R28L	CCGCGGCGCCCCA		40	4	0.1	39	0	0		32		0	0					A	65360091	C	A	65360091	3	1	119	1	0	0	0	0	1	0	0	0	13134	768	27	1	737	1	RASL12	15	65360091	Missense_Mutation	SNP	C	TCGA-XE-AAO6-01A-31D-A435-10		65360091	37171301	40	8733											
MAPK8IP3	23162	mdanderson.org	37	chr16	1817699	1817699	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacgcaccagcatctacaGgacgtggacattgagcccta	9	14	1	1	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_015133	exon27	c.G3369T	p.Q1123H	TCTACAGGACGTG		50	3	0.06	100	0	0				57	0	0				T	1817699	G	T	1817699	3	4	119	1	0	0	0	0	1	0	0	0	9335	991	35	3	3491	3	MAPK8IP3	16	1817699	Missense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10		1817699	88537054	41	8734											
SLC9A3R2	9351	mdanderson.org	37	chr16	2079697	2079697	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaccgaggagatggcccagCgagggctcccacccgcccac	13	17	0	1	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_004785	exon2	c.C328T	p.R110X	GCCCAGCGAGGGC		36	3	0.08	73	0	0				8	0	0				T	2079697	C	T	2079697	4	4	119	1	0	0	0	0	0	1	0	0	14769	760	27	1	334	1	SLC9A3R2	16	2079697	Nonsense_Mutation	SNP	C	TCGA-XE-AAO6-01A-31D-A435-10	261998	2079697	88275056	42	8735											
GSPT1	2935	broad.mit.edu	37	chr16	12009530	12009531	+	In_Frame_Ins	INS	-	-	CCG													tgctgctgccgctgctgctcINSccgccgccgccgccgccgcc					rs71408216	alternate_allele	TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	GSPT1	NM_001130006	exon1	c.48_49insCGG	p.G16delinsGG	GCTGCTCCCGCCG		6	2	0.33	7	0	0		71		0	0					CCG	12009531	-	CCG	12009530	7	5	119	1	0	1	1	0	0	0	0	0	6866	842	30	0	1925	0	GSPT1	16	12009530	In_Frame_Ins	INS	-	TCGA-XE-AAO6-01A-31D-A435-10	9929833	12009530	78345223	43	8736											
USP31	57478	mdanderson.org	37	chr16	23160065	23160065	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccctgcgcgccgcggcccGcaggctgctccgggtcaggc	17	18	1	0	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_020718	exon1	c.C527T	p.A176V	CGGCCCGCAGGCT		25	2	0.08	30	0	0				0	0					A	23160065	G	A	23160065	3	1	119	1	0	0	0	0	1	0	0	0	17121	1087	38	1	3595	1	USP31	16	23160065	Missense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10	11150535	23160065	67194688	44	8737											
ZDHHC1	29800	mdanderson.org	37	chr16	67428910	67428910	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagaggcgctcacccgacGccggatccgaggtctcagac	15	14	2	2	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_013304	exon10	c.C1225A	p.R409S	CCCGACGCCGGAT		45	3	0.07	76	0	0				9	0	0				T	67428910	G	T	67428910	3	4	119	1	0	0	0	0	1	0	0	0	17657	1087	38	1	240	1	ZDHHC1	16	67428910	Missense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10	44268845	67428910	22925843	45	8738											
DUS2L	54920	mdanderson.org	37	chr16	68112813	68112813	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccagagctcaggagctagCacaacctggggatctgtgca	12	13	2	1	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001271762	exon16	c.C1406T	p.A469V	AGCTAGCACAACC		40	3	0.08	53	1	0.0188679245				73	0	0				T	68112813	C	T	68112813	3	4	119	1	0	0	0	0	1	0	0	0	4832	710	25	2	1464	2	DUS2L	16	68112813	Missense_Mutation	SNP	C	TCGA-XE-AAO6-01A-31D-A435-10	683903	68112813	22241940	46	8739											
CHST4	10164	mdanderson.org	37	chr16	71571131	71571131	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggtgcgcttcttcaaccTgcagtccctctacccgctgc	10	16	3	0	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001166395	exon2	c.T551C	p.L184P	TCAACCTGCAGTC		51	3	0.06	73	0	0				0	0					C	71571131	T	C	71571131	3	2	119	1	0	0	0	0	1	0	0	0	3428	1580	55	4	553	4	CHST4	16	71571131	Missense_Mutation	SNP	T	TCGA-XE-AAO6-01A-31D-A435-10	3458318	71571131	18783622	47	8740											
PFAS	5198	broad.mit.edu	37	chr17	8167575	8167576	+	Frame_Shift_Ins	INS	-	-	A													tcctgtcagaagaaatggccINSagggggatgcccccccgaca					novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	PFAS	NM_012393	exon16	c.1837_1838insA	p.Q613fs	AATGGCCAGGGGG		84	8	0.1	110	0	0		91		17	0	0				A	8167576	-	A	8167575	7	5	119	1	0	1	1	0	0	0	0	0	11801	595	21	0	1895	0	PFAS	17	8167575	Frame_Shift_Ins	INS	-	TCGA-XE-AAO6-01A-31D-A435-10		8167575	73027635	48	8741											
PIK3R5	23533	mdanderson.org	37	chr17	8812424	8812424	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcaggatctgctcaaggagGataaggaagtggcccgggtc	16	8	2	0	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001142633	exon3	c.C171A	p.I57I	AAGGAGGATAAGG		50	3	0.06	56	0	0				0	0					T	8812424	G	T	8812424	2	4	119	1	0	0	0	0	0	0	0	1	11969	1164	41	3		3	PIK3R5	17	8812424	Silent	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10	644849	8812424	72382786	49	8742											
DHRS7C	201140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	9683343	9683343	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccaacaggaccagctttgGggtgaatgtctgctgaacca	12	10	1	2	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001220493	exon3	c.C280T	p.P94S	GCTTTGGGGTGAA		85	16	0.19	113	0	0				0	0					A	9683343	G	A	9683343	3	1	119	1	0	0	0	0	1	0	0	0	4525	1232	43	3	674	3	DHRS7C	17	9683343	Missense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10	870919	9683343	71511867	50	8743											
SMCR7	0	broad.mit.edu;mdanderson.org	37	chr17	18167776	18167776	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	atgacgctgggactcgccggCggctgctgctgctgctgtgt	16	12	0	1	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	SMCR7	NM_148886	exon4	c.C1096G	p.R366G	CGCCGGCGGCTGC		17	3	0.18	30	0	0		20		3	0	0				G	18167776	C	G	18167776	3	3	119	1	0	0	0	0	1	0	0	0	14843	759	27	5	1110	5	SMCR7	17	18167776	Missense_Mutation	SNP	C	TCGA-XE-AAO6-01A-31D-A435-10	8484433	18167776	63027434	51	8744											
PSMD11	5717	broad.mit.edu	37	chr17	30771555	30771555	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggtaagatggcggcggcggCggtggtggagttccagagag	21	7	0	2	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	PSMD11	NM_002815	exon1	c.C14T	p.A5V	CGGCGGCGGTGGT		232	5	0.02	184	0	0		41		11	0	0				T	30771555	C	T	30771555	3	4	119	1	0	0	0	0	1	0	0	0	12742	768	27	1	16	1	PSMD11	17	30771555	Missense_Mutation	SNP	C	TCGA-XE-AAO6-01A-31D-A435-10	12603779	30771555	50423655	52	8745											
KRT36	8689	mdanderson.org	37	chr17	39644941	39644941	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggcattatcaatctgcagGaccagcctggcattctcaga	9	11	3	1	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_003771	exon2	c.C495A	p.V165V	CTGCAGGACCAGC		43	3	0.07	56	0	0				0	0					T	39644941	G	T	39644941	2	4	119	1	0	0	0	0	0	0	0	1	8515	1161	41	3		3	KRT36	17	39644941	Silent	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10	8873386	39644941	41550269	53	8746											
ATP8B3	148229	broad.mit.edu	37	chr19	1799763	1799764	+	Frame_Shift_Ins	INS	-	-	A													acagagtgagactctgcctcINSaaaaaaaaaaaaaaattttc					novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	ATP8B3	.	.	.	.	CTGCCTCAAAAAA		6	2	0.33	4	0	0		108		7	0	0				A	1799764	-	A	1799763	7	5	119	1	0	1	1	0	0	0	0	0	1194	841	29	0		0	ATP8B3	19	1799763	Frame_Shift_Ins	INS	-	TCGA-XE-AAO6-01A-31D-A435-10		1799763	57329220	54	8747											
CD320	51293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	8367841	8367841	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccatggttgtggcatcccCttccgggaggatctcattgg	12	13	1	0	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_016579	exon4	c.G526A	p.G176R	CATCCCCTTCCGG		106	24	0.23	65	0	0				212	49	0.23				T	8367841	C	T	8367841	3	4	119	1	0	0	0	0	1	0	0	0	3026	681	24	3	330	3	CD320	19	8367841	Missense_Mutation	SNP	C	TCGA-XE-AAO6-01A-31D-A435-10	6568078	8367841	50761142	55	8748											
RFX1	5989	mdanderson.org	37	chr19	14074032	14074032	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagagcagccggatgaggtGgaaggaaccgaagctggcgg	19	7	0	2	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_002918	exon19	c.C2626A	p.H876N	TGAGGTGGAAGGA		52	3	0.06	38	0	0				34	0	0				T	14074032	G	T	14074032	3	4	119	1	0	0	0	0	1	0	0	0	13313	1348	47	3	325	3	RFX1	19	14074032	Missense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10	5706191	14074032	45054951	56	8749											
SLC27A1	376497	mdanderson.org	37	chr19	17581367	17581367	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggatgcgggctccgggtgcGggcgcggcctcggtggtctc	20	12	1	0	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_198580	exon1	c.G18A	p.A6A	GGGTGCGGGCGCG		11	2	0.18	12	0	0				0	0					A	17581367	G	A	17581367	2	1	119	1	0	0	0	0	0	0	0	1	14579	1103	39	1		1	SLC27A1	19	17581367	Silent	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10	3507335	17581367	41547616	57	8750											
C20orf144	128864	mdanderson.org	37	chr20	32251487	32251487	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ggtagcgagcgcgagccgagGatgccggtactgctgctgct	17	11	0	0	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_080825	exon2	c.G276C	p.R92S	GCCGAGGATGCCG		11	1	0.09	16	0	0				0	0					C	32251487	G	C	32251487	3	2	119	1	0	0	0	0	1	0	0	0	2104	1165	41	5	282	5	C20orf144	20	32251487	Missense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10		32251487	30774033	58	8751											
BAGE	85319	broad.mit.edu	37	chr21	11088494	11088494	+	RNA	DEL	G	G	-													ccatttgtttttttgttgttGttgttttttttgagacggag					novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	.	.	.	.	GTTGTTGTTGTTT		6	2	0.33	5	1	0.2				0	0					-	11088494	G	-	11088494	6	5	119	0	1	1	0	1	0	0	0	0	1289	1392	48	0		0	BAGE	21	11088494	RNA	DEL	G	TCGA-XE-AAO6-01A-31D-A435-10		11088494	37041401	59	8752											
SHANK3	85358	mdanderson.org	37	chr22	51169200	51169200	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atttcagcgcagcgcagcccCgggggcccgggcggcggggc	19	15	1	0	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_033517	exon22	c.C4614A	p.P1538P	CAGCCCCGGGGGC		20	2	0.1	20	0	0				10	0	0				A	51169200	C	A	51169200	2	1	119	1	0	0	0	0	0	0	0	1	14320	639	23	1		1	SHANK3	22	51169200	Silent	SNP	C	TCGA-XE-AAO6-01A-31D-A435-10		51169200	135366	60	8753											
COL4A6	1288	broad.mit.edu;mdanderson.org	37	chrX	107457453	107457453	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggggcctggttgtccaggGtggccctgttcaaagagaaa	15	9	1	1	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	COL4A6	NM_001847	exon6	c.C333A	p.H111Q	TCCAGGGTGGCCC		63	4	0.06	35	0	0		270		2	0	0				T	107457453	G	T	107457453	3	4	119	1	0	0	0	0	1	0	0	0	3718	1252	44	3	4902	3	COL4A6	23	107457453	Missense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10		107457453	47813107	61	8754											
HAUS7	55559	mdanderson.org	37	chrX	152721206	152721206	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgcccgcagcagccccttGctcatgctgtgcaaagtact	10	15	1	0	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_017518	exon8	c.C754A	p.Q252K	CCCCTTGCTCATG		23	2	0.09	24	0	0				104	0	0				T	152721206	G	T	152721206	3	4	119	1	0	0	0	0	1	0	0	0	7011	1328	46	2	364	2	HAUS7	23	152721206	Missense_Mutation	SNP	G	TCGA-XE-AAO6-01A-31D-A435-10	45263753	152721206	2549354	62	8755											
MIB2	142678	ucsc.edu;bcgsc.ca	37	chr1	1564101	1564101	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccttgcagctgctgtccaGggtgaggaagtgtggcgtgg	18	9	0	1	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	MIB2	NM_080875	exon16	c.G2546T	p.R849M	TGTCCAGGGTGAG		37	4	0.11	35	0	0		62		40	0	0				T	1564101	G	T	1564101	3	4	120	1	0	0	0	0	1	0	0	0	9615	1014	35	3	2608	3	MIB2	1	1564101	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10		1564101	247686520	1	8756											
PRDM2	7799	hgsc.bcm.edu	37	chr1	14105122	14105124	+	In_Frame_Del	DEL	GAA	GAA	-													aggaggaagaggaggaggatGaagaagaagaagaagatgat					novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	GAA	GAA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	PRDM2,colon,carcinoma,0,1	PRDM2	NM_015866	exon8	c.831_833del	p.277_278del	GAGGATGAAGAAG		149	10	0.07	150	0	0		147		1	0	0				-	14105124	GAA	-	14105122	7	5	120	1	0	1	0	1	0	0	0	0	12509	1291	45	0	858	0	PRDM2	1	14105122	In_Frame_Del	DEL	GAA	TCGA-XE-AAOB-01A-11D-A435-10	12541021	14105122	235145499	2	8757											
COL11A1	1301	broad.mit.edu	37	chr1	103491776	103491776	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	actgctttgtttttacctccGtctgtgctattgtctcctca	6	12	3	0	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	COL11A1_ENST00000370096,NS,carcinoma,+1,2	COL11A1	NM_080630	exon6	c.C893G	p.T298R	ACCTCCGTCTGTG		215	6	0.03	248	0	0		972	2	7	0	0				C	103491776	G	C	103491776	3	2	120	1	0	0	0	0	1	0	0	0	3690	1145	40	5	4932	5	COL11A1	1	103491776	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10	89386654	103491776	145758845	3	8758											
ILDR2	387597	mdanderson.org	37	chr1	166890612	166890612	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catctccgacttggagcgcgGctggctgcgggcagagaagg	17	11	1	1	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_199351	exon9	c.C1216T	p.P406S	AGCGCGGCTGGCT		21	2	0.1	29	0	0				0	0					A	166890612	G	A	166890612	3	1	120	1	0	0	0	0	1	0	0	0	7753	1203	42	2	711	2	ILDR2	1	166890612	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10	63398836	166890612	82360009	4	8759											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	186056429	186056429	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tagctatcaatcaagctggcGaaagcaagaaaaagttttcc	8	8	2	1	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	HMCN1,NS,carcinoma,0,2	HMCN1	NM_031935	exon59	c.G9127A	p.E3043K	GCTGGCGAAAGCA		175	30	0.17	221	0	0		0	2	1	0	0				A	186056429	G	A	186056429	3	1	120	1	0	0	0	0	1	0	0	0	7260	1059	37	1	9361	1	HMCN1	1	186056429	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10	19165817	186056429	63194192	5	8760											
PTGS2	5743	broad.mit.edu	37	chr1	186645692	186645692	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatactctgttgtgttcccGcagccagattgtggcataca	10	11	1	1	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	PTGS2_ENST00000367468,NS,carcinoma,0,4	PTGS2	NM_000963	exon7	c.C877A	p.R293R	GTTCCCGCAGCCA		101	4	0.04	112	0	0		144	4	2	0	0				T	186645692	G	T	186645692	2	4	120	1	0	0	0	0	0	0	0	1	12805	1086	38	1		1	PTGS2	1	186645692	Silent	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10	589263	186645692	62604929	6	8761											
TET3	200424	mdanderson.org	37	chr2	74307690	74307690	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacggggaaggagggaaagaGctcccgcggttgccccattg	16	11	0	1	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_144993	exon3	c.G2246T	p.S749I	GAAAGAGCTCCCG		52	3	0.06	52	0	0				0	0					T	74307690	G	T	74307690	3	4	120	1	0	0	0	0	1	0	0	0	15829	971	34	2	2256	2	TET3	2	74307690	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10		74307690	168891683	7	8762											
NR4A2	0	broad.mit.edu	37	chr2	157182338	157182338	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaatttcaggtagaaaatgCgctgtagcccctgtgtgcaa	10	10	1	1	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	NR4A2,NS,carcinoma,-1,1	NR4A2	NM_006186	exon8	c.G1715A	p.R572H	AAAATGCGCTGTA		185	4	0.02	185	0	0		82	1	10	0	0				T	157182338	C	T	157182338	3	4	120	1	0	0	0	0	1	0	0	0	10680	768	27	1	85	1	NR4A2	2	157182338	Missense_Mutation	SNP	C	TCGA-XE-AAOB-01A-11D-A435-10	82874648	157182338	86017035	8	8763											
FARSB	10056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	223507631	223507631	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acacaggagatcatatctatTggcagggacgtcaattttgt	10	7	3	1	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_005687	exon3	c.A208G	p.N70D	ATCTATTGGCAGG		115	17	0.15	142	0	0				39	14	0.36				C	223507631	T	C	223507631	3	2	120	1	0	0	0	0	1	0	0	0	5712	1812	63	4	1621	4	FARSB	2	223507631	Missense_Mutation	SNP	T	TCGA-XE-AAOB-01A-11D-A435-10	66325293	223507631	19691742	9	8764											
SLIT2	9353	mdanderson.org	37	chr4	20570610	20570610	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taataactacacatgcctttGcccacctgagtatacaggta	6	11	0	1	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_004787	exon29	c.G3071T	p.C1024F	GCCTTTGCCCACC		46	3	0.07	73	0	0				1	0	0				T	20570610	G	T	20570610	3	4	120	1	0	0	0	0	1	0	0	0	14793	1319	46	2	3185	2	SLIT2	4	20570610	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10		20570610	170583666	10	8765											
CCDC149	91050	broad.mit.edu	37	chr4	24875311	24875311	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aataagtcttacctgtttccTtttttcaggaggaagtgatg	9	6	2	1	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	CCDC149	NM_173463	exon4	c.A256G	p.R86G	GTTTCCTTTTTTC		79	4	0.05	92	0	0		41		4	0	0				C	24875311	T	C	24875311	3	2	120	1	0	0	0	0	1	0	0	0	2801	1608	56	4	1377	4	CCDC149	4	24875311	Missense_Mutation	SNP	T	TCGA-XE-AAOB-01A-11D-A435-10	4304701	24875311	166278965	11	8766											
TRIM61	391712	broad.mit.edu	37	chr4	165890992	165890992	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggacagcaaaagtggcaaaAggggcaggggaaactatcat	14	6	1	0	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	TRIM61	NM_001012414	exon3	c.T163C	p.F55L	GGCAAAAGGGGCA		672	6	0.01	907	1	0.0011025358		11		6	0	0				G	165890992	A	G	165890992	3	3	120	1	0	0	0	0	1	0	0	0	16596	72	3	4	474	4	TRIM61	4	165890992	Missense_Mutation	SNP	A	TCGA-XE-AAOB-01A-11D-A435-10	141015681	165890992	25263284	12	8767											
SAP30	8819	broad.mit.edu	37	chr4	174295154	174295154	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aagacacttcaagctaccaaCcagaccaggacttaataaag	6	11	1	2	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	SAP30	NM_003864	exon3	c.C506A	p.T169N	TACCAACCAGACC		349	6	0.02	391	0	0		9		56	0	0				A	174295154	C	A	174295154	3	1	120	1	0	0	0	0	1	0	0	0	13885	507	18	3	516	3	SAP30	4	174295154	Missense_Mutation	SNP	C	TCGA-XE-AAOB-01A-11D-A435-10	8404162	174295154	16859122	13	8768											
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	139819758	139819758	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttaatgctgttcgtaaattGctagatgaaggcagaagtgt	12	4	0	3	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_024668	exon4	c.G672A	p.L224L	TAAATTGCTAGAT		59	10	0.17	98	0	0				38	7	0.18				A	139819758	G	A	139819758	2	1	120	1	0	0	0	0	0	0	0	1	624	1310	46	2		2	ANKHD1	5	139819758	Silent	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10		139819758	41095502	14	8769											
PCDHB13	0	broad.mit.edu	37	chr5	140594283	140594283	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaaatacccagagctggtGctggacaaagcgctggaccg	14	10	0	1	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	PCDHB13	NM_018933	exon1	c.G588A	p.V196V	GCTGGTGCTGGAC		308	11	0.04	409	0	0		142		1	0	0				A	140594283	G	A	140594283	2	1	120	1	0	0	0	0	0	0	0	1	11584	1306	46	2		2	PCDHB13	5	140594283	Silent	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10	774525	140594283	40320977	15	8770											
HK3	3101	mdanderson.org	37	chr5	176308175	176308175	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	caggaacgtgaccacacagcGaggggccagctcccgcactg	13	15	0	1	rs200044768	alternate_allele	TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	HK3_ENST00000292432,NS,carcinoma,+1,3	HK3_ENST00000292432	NM_002115	exon19	c.C2671A	p.R891S	CACAGCGAGGGGC		43	3	0.07	69	0	0		1	3	133	0	0				T	176308175	G	T	176308175	3	4	120	1	0	0	0	0	1	0	0	0	7232	1058	37	1	104	1	HK3	5	176308175	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10	35713892	176308175	4607085	16	8771											
EPB41L2	2037	mdanderson.org	37	chr6	131222222	131222222	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcatagtcaccaagttcaGcctgcagggtgtaggatccc	12	11	3	0	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_001252660	exon7	c.C1028A	p.A343D	AGTTCAGCCTGCA		116	5	0.04	126	0	0				59	0	0				T	131222222	G	T	131222222	3	4	120	1	0	0	0	0	1	0	0	0	5181	971	34	2	2041	2	EPB41L2	6	131222222	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10		131222222	39892845	17	8772											
HIVEP2	3097	mdanderson.org	37	chr6	143092507	143092507	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggaggcagcacagcaggCgggccatggtgccacccgga	17	12	0	1	rs372386907		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_006734	exon5	c.G3369A	p.P1123P	AGCAGGCGGGCCA		43	3	0.07	34	0	0				2	0	0				T	143092507	C	T	143092507	2	4	120	1	0	0	0	0	0	0	0	1	7227	755	27	1		1	HIVEP2	6	143092507	Silent	SNP	C	TCGA-XE-AAOB-01A-11D-A435-10	11870285	143092507	28022560	18	8773											
NPC1L1	29881	broad.mit.edu	37	chr7	44575925	44575925	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcgcatttcctctaagaagGcctcctcccacagcttggcc	7	17	1	1	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	NPC1L1	NM_001101648	exon4	c.C1784T	p.A595V	AAGAAGGCCTCCT		72	4	0.06	84	0	0		141		0	0					A	44575925	G	A	44575925	3	1	120	1	0	0	0	0	1	0	0	0	10617	1203	42	2	2363	2	NPC1L1	7	44575925	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10		44575925	114562738	19	8774											
DTX2	113878	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	76112033	76112033	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actgtcaactacaccacccaCacgcagaccaacaagacttc	4	17	1	2	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_001102596	exon2	c.C477T	p.H159H	CACCCACACGCAG		298	55	0.18	315	0	0				34	3	0.09				T	76112033	C	T	76112033	2	4	120	1	0	0	0	0	0	0	0	1	4820	477	17	3		3	DTX2	7	76112033	Silent	SNP	C	TCGA-XE-AAOB-01A-11D-A435-10	31536108	76112033	83026630	20	8775											
PEX1	5189	mdanderson.org	37	chr7	92138651	92138651	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ataacttcttaccccaaagaGctcagctttaaaaaaggaag	6	9	2	1	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_000466	exon9	c.C1662A	p.S554R	CAAAGAGCTCAGC		72	4	0.06	61	0	0				8	0	0				T	92138651	G	T	92138651	3	4	120	1	0	0	0	0	1	0	0	0	11782	962	34	2	2253	2	PEX1	7	92138651	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10	16026618	92138651	67000012	21	8776											
GRM8	2918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	126249528	126249528	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcatctccgttttcattaAaagtgacaggagtgccagca	10	9	2	1	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_000845	exon7	c.T1382C	p.F461S	TCATTAAAAGTGA		95	12	0.13	98	0	0				0	0					G	126249528	A	G	126249528	3	3	120	1	0	0	0	0	1	0	0	0	6843	14	1	4	1410	4	GRM8	7	126249528	Missense_Mutation	SNP	A	TCGA-XE-AAOB-01A-11D-A435-10	34110877	126249528	32889135	22	8777											
KIAA1549	57670	bcgsc.ca;mdanderson.org	37	chr7	138593755	138593755	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgcaccgtgaggttataCgttccctggtggtgttttct	11	10	1	1	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	KIAA1549	NM_020910	exon5	c.G3258A	p.T1086T	GTTATACGTTCCC		90	5	0.06	103	0	0		314		7	0	0				T	138593755	C	T	138593755	2	4	120	1	0	0	0	0	0	0	0	1	8285	523	19	1		1	KIAA1549	7	138593755	Silent	SNP	C	TCGA-XE-AAOB-01A-11D-A435-10	12344227	138593755	20544908	23	8778											
HTR5A	3361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	154876031	154876031	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgctggatccccttctttcTcaccgagctcatcagtcccc	6	18	4	0	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_024012	exon2	c.T908C	p.L303P	TCTTTCTCACCGA		157	27	0.17	207	0	0				0	0					C	154876031	T	C	154876031	3	2	120	1	0	0	0	0	1	0	0	0	7493	1551	54	4	914	4	HTR5A	7	154876031	Missense_Mutation	SNP	T	TCGA-XE-AAOB-01A-11D-A435-10	16282276	154876031	4262632	24	8779											
CSMD1	64478	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	2944635	2944635	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaccctggcagagtggcgtGagggagtcccactggtacat	14	10	0	2	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	CSMD1	NM_033225	exon49	c.C7458T	p.L2486L	TGGCGTGAGGGAG		87	5	0.06	104	0	0		1469		0	0					A	2944635	G	A	2944635	2	1	120	1	0	0	0	0	0	0	0	1	3969	1277	45	3		3	CSMD1	8	2944635	Silent	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10		2944635	143419387	25	8780											
CYP7A1	1581	broad.mit.edu	37	chr8	59409377	59409377	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtttctcccgggcattgtGcgcagtcctgaacatgtgaa	11	11	1	2	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	CYP7A1	NM_000780	exon3	c.C694T	p.H232Y	CATTGTGCGCAGT		143	4	0.03	157	0	0		76		0	0					A	59409377	G	A	59409377	3	1	120	1	0	0	0	0	1	0	0	0	4219	1319	46	2	836	2	CYP7A1	8	59409377	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10	56464742	59409377	86954645	26	8781											
SNAPC4	6621	mdanderson.org	37	chr9	139272498	139272498	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccttctcaggcccaggctGgggtaggggcggcttctcca	14	15	2	0	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_003086	exon21	c.C3781A	p.Q1261K	CAGGCTGGGGTAG		38	3	0.08	53	0	0				17	0	0				T	139272498	G	T	139272498	3	4	120	1	0	0	0	0	1	0	0	0	14890	1357	47	3	636	3	SNAPC4	9	139272498	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10		139272498	1940933	27	8782											
KCNMA1	3778	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	79163700	79163700	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcatccagccgacctcggCggccactgcctcctcttttt	9	17	2	0	rs142858967	bycluster;byfrequency;alternate_allele	TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	KCNMA1_ENST00000406533,colon,adenoma,0,4	KCNMA1	NM_002247	exon2	c.G460A	p.A154T	CCTCGGCGGCCAC		50	5	0.1	81	0	0		370	4	2	0	0				T	79163700	C	T	79163700	3	4	120	1	0	0	0	0	1	0	0	0	8116	768	27	1	3530	1	KCNMA1	10	79163700	Missense_Mutation	SNP	C	TCGA-XE-AAOB-01A-11D-A435-10		79163700	56371047	28	8783											
FRA10AC1	118924	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	95458121	95458121	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtttttctttctgaaatGgtttttggagcagtaagtca	9	5	3	1	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	FRA10AC1	NM_145246	exon3	c.C110A	p.P37Q	TGAAATGGTTTTT		89	5	0.06	123	1	0.0081300813		68		20	0	0				T	95458121	G	T	95458121	3	4	120	1	0	0	0	0	1	0	0	0	6074	1348	47	3	885	3	FRA10AC1	10	95458121	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10	16294421	95458121	40076626	29	8784											
ARHGAP19	84986	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	99023294	99023294	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgaaattcccctgattccaAgtcaatgtcagttccattat	6	10	2	2	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_001204300	exon4	c.T496G	p.L166V	ATTCCAAGTCAAT		137	8	0.06	145	0	0				3	0	0				C	99023294	A	C	99023294	3	2	120	1	0	0	0	0	1	0	0	0	866	69	3	4	1024	4	ARHGAP19	10	99023294	Missense_Mutation	SNP	A	TCGA-XE-AAOB-01A-11D-A435-10	3565173	99023294	36511453	30	8785											
PACSIN3	29763	mdanderson.org	37	chr11	47202014	47202014	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acccagcctcacctccttcaGcctcttcagccagggcttct	6	19	5	0	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_001184975	exon5	c.C439A	p.L147M	CCTTCAGCCTCTT		49	3	0.06	38	0	0				42	0	0				T	47202014	G	T	47202014	3	4	120	1	0	0	0	0	1	0	0	0	11422	962	34	2	863	2	PACSIN3	11	47202014	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10		47202014	87804502	31	8786											
NDUFV1	4723	mdanderson.org	37	chr11	67377004	67377004	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttacgccatgatcctcaCaagctgctggaaggctgcct	9	13	2	1	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	NDUFV1,NS,carcinoma,0,1	NDUFV1	NM_007103	exon4	c.C408A	p.H136Q	TCCTCACAAGCTG		40	3	0.08	36	0	0		0	1	314	0	0				A	67377004	C	A	67377004	3	1	120	1	0	0	0	0	1	0	0	0	10345	477	17	3	422	3	NDUFV1	11	67377004	Missense_Mutation	SNP	C	TCGA-XE-AAOB-01A-11D-A435-10	20174990	67377004	67629512	32	8787											
MYEOV	26579	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	69063822	69063822	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcctctcctcctccaccaccTcctcctcctcctcctcatca	0	25	3	0	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	MYEOV	NM_138768	exon3	c.T905A	p.L302H	ACCACCTCCTCCT		82	5	0.06	107	1	0.0093457944		42		5	0	0				A	69063822	T	A	69063822	3	1	120	1	0	0	0	0	1	0	0	0	10072	1551	54	5	911	5	MYEOV	11	69063822	Missense_Mutation	SNP	T	TCGA-XE-AAOB-01A-11D-A435-10	1686818	69063822	65942694	33	8788											
TECTA	7007	mdanderson.org	37	chr11	121061449	121061449	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atggaacttcaagtctggacGcttcttctcatcatgatcca	7	11	5	1	rs141203939	bycluster;by1000genomes	TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_005422	exon23	c.G6402T	p.T2134T	CTGGACGCTTCTT		47	3	0.06	88	0	0	0			1	0	0				T	121061449	G	T	121061449	2	4	120	1	0	0	0	0	0	0	0	1	15805	1074	38	1		1	TECTA	11	121061449	Silent	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10	51997627	121061449	13945067	34	8789											
UBASH3B	84959	mdanderson.org	37	chr11	122526901	122526901	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacgtgctcctctccatgggGttccccagagcccgcgcgta	12	16	1	1	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_032873	exon1	c.G144A	p.G48G	CATGGGGTTCCCC		46	3	0.07	69	0	0				12	0	0				A	122526901	G	A	122526901	2	1	120	1	0	0	0	0	0	0	0	1	16900	1248	44	3		3	UBASH3B	11	122526901	Silent	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10	1465452	122526901	12479615	35	8790											
GRIN2B	2904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	13724765	13724765	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagggagagcaatgcatcaTctacacccctctggttgaac	9	12	4	2	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_000834	exon10	c.A2144T	p.D715V	GCATCATCTACAC		238	21	0.09	153	0	0				0	0					A	13724765	T	A	13724765	3	1	120	1	0	0	0	0	1	0	0	0	6820	1435	50	5	2326	5	GRIN2B	12	13724765	Missense_Mutation	SNP	T	TCGA-XE-AAOB-01A-11D-A435-10		13724765	120127130	36	8791											
ZIC2	7546	mdanderson.org	37	chr13	100635045	100635045	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accaccaccaccccggtgccTttttccgctatatgcggcag	8	17	0	0	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_007129	exon1	c.T727C	p.F243L	GGTGCCTTTTTCC		24	3	0.13	31	0	0				2	0	0				C	100635045	T	C	100635045	3	2	120	1	0	0	0	0	1	0	0	0	17736	1609	56	4	729	4	ZIC2	13	100635045	Missense_Mutation	SNP	T	TCGA-XE-AAOB-01A-11D-A435-10		100635045	14534833	37	8792											
NKX2-8	26257	mdanderson.org	37	chr14	37050384	37050384	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgccaggtcaggcgactccGccgcccctggagcgcgagcg	15	17	1	0	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_014360	exon2	c.C443T	p.A148V	GACTCCGCCGCCC		17	2	0.12	12	0	0				0	0					A	37050384	G	A	37050384	3	1	120	1	0	0	0	0	1	0	0	0	10500	1087	38	1	280	1	NKX2-8	14	37050384	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10		37050384	70299156	38	8793											
POLG	5428	mdanderson.org	37	chr15	89876841	89876841	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgttgctgctgctgctGctgctgctgctgctgctgcc	13	14	0	0	rs200132079	alternate_allele	TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_001126131	exon2	c.C145A	p.Q49K	GCTGCTGCTGCTG		18	2	0.11	17	0	0				7	0	0				T	89876841	G	T	89876841	3	4	120	1	0	0	0	0	1	0	0	0	12247	1328	46	2	3662	2	POLG	15	89876841	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10		89876841	12654551	39	8794											
MSLN	10232	mdanderson.org	37	chr16	815169	815169	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctctgggaggcctggcttgCgacctgcctgggcgctttgt	16	12	1	0	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	MSLN_ENST00000446427,NS,carcinoma,0,2	MSLN_ENST00000446427	NM_005823	exon9	c.C570T	p.C190C	GGCTTGCGACCTG		24	2	0.08	23	0	0		0	2	1	0	0				T	815169	C	T	815169	2	4	120	1	0	0	0	0	0	0	0	1	9928	776	27	1		1	MSLN	16	815169	Silent	SNP	C	TCGA-XE-AAOB-01A-11D-A435-10		815169	89539584	40	8795											
ARMC5	79798	mdanderson.org	37	chr16	31476521	31476521	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cattggttcagcactgtcctGactgctccccaccagcacgc	8	17	1	1	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_024742	exon4	c.G2177C	p.X726S	TGTCCTGACTGCT		60	3	0.05	60	0	0				1	0	0				C	31476521	G	C	31476521	3	2	120	1	0	0	0	0	1	0	0	0	953	1285	45	5	2191	5	ARMC5	16	31476521	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10	30661352	31476521	58878232	41	8796											
HEATR3	55027	mdanderson.org	37	chr16	50112858	50112858	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atggggatgatttgattgaaGatgatgaaatggaaggaatt	14	0	0	6	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_182922	exon7	c.G970T	p.D324Y	ATTGAAGATGATG		37	3	0.08	42	0	0				16	0	0				T	50112858	G	T	50112858	3	4	120	1	0	0	0	0	1	0	0	0	7069	942	33	3	996	3	HEATR3	16	50112858	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10	18636337	50112858	40241895	42	8797											
PHF23	79142	broad.mit.edu;bcgsc.ca	37	chr17	7139505	7139506	+	Frame_Shift_Del	DEL	AG	AG	-													tcctcttcctcctcctcttcAgagtctgtatcactgggggg					novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	AG	AG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	PHF23	NM_024297	exon4	c.740_741del	p.247_247del	CTCTTCAGAGTCT		48	9	0.19	52	0	0		38		134	1	0.01				-	7139506	AG	-	7139505	7	5	120	1	0	1	0	1	0	0	0	0	11882	175	7	0	478	0	PHF23	17	7139505	Frame_Shift_Del	DEL	AG	TCGA-XE-AAOB-01A-11D-A435-10		7139505	74055705	43	8798											
KDM6B	23135	mdanderson.org	37	chr17	7756632	7756632	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccgcagcgcaggcctgcaGggcgtggtggtgctggagca	19	12	0	0	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_001080424	exon22	c.G4842T	p.Q1614H	CCTGCAGGGCGTG		24	2	0.08	39	0	0				18	0	0				T	7756632	G	T	7756632	3	4	120	1	0	0	0	0	1	0	0	0	8180	991	35	3	4916	3	KDM6B	17	7756632	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10	617127	7756632	73438578	44	8799											
MYH10	4628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	8439201	8439201	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttttatctgtggctttagGgaaccagcattcttcatcca	9	9	3	0	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_001256012	exon15	c.C1654T	p.P552S	CTTTAGGGAACCA		125	17	0.14	143	0	0				6	2	0.33				A	8439201	G	A	8439201	3	1	120	1	0	0	0	0	1	0	0	0	10077	1232	43	3	4418	3	MYH10	17	8439201	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10	682569	8439201	72756009	45	8800											
ABHD15	116236	mdanderson.org	37	chr17	27893542	27893542	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccggcgctggtgatccggCggccccgaacacaaggtcct	13	17	0	1	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_198147	exon1	c.G443A	p.R148H	ATCCGGCGGCCCC		57	3	0.05	45	0	0				9	0	0				T	27893542	C	T	27893542	3	4	120	1	0	0	0	0	1	0	0	0	81	768	27	1	971	1	ABHD15	17	27893542	Missense_Mutation	SNP	C	TCGA-XE-AAOB-01A-11D-A435-10	19454341	27893542	53301668	46	8801											
BAHCC1	57597	mdanderson.org	37	chr17	79414838	79414838	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagcgagctggctgacctgGcaatccagcggcagaggagt	15	11	1	2	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	.	.	.	.	GACCTGGCAATCC		50	4	0.08	53	0	0				5	0	0				A	79414838	G	A	79414838	3	1	120	1	0	0	0	0	1	0	0	0	1294	1203	42	2	3813	2	BAHCC1	17	79414838	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10	51521296	79414838	1780372	47	8802											
ONECUT2	9480	mdanderson.org	37	chr18	55103650	55103650	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgccacgccgctgggcaaCgggctaggcggcctccacaa	14	17	0	0	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_004852	exon1	c.C702T	p.N234N	GGGCAACGGGCTA		43	3	0.07	38	0	0				0	0					T	55103650	C	T	55103650	2	4	120	1	0	0	0	0	0	0	0	1	10916	535	19	1		1	ONECUT2	18	55103650	Silent	SNP	C	TCGA-XE-AAOB-01A-11D-A435-10		55103650	22973598	48	8803											
VAV1	7409	mdanderson.org	37	chr19	6826646	6826646	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcgtctatggccgctactGcagccaggtggagtcagcca	12	14	2	0	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_001258206	exon9	c.G851A	p.C284Y	GCTACTGCAGCCA		32	3	0.09	38	0	0				43	0	0				A	6826646	G	A	6826646	3	1	120	1	0	0	0	0	1	0	0	0	17190	1319	46	2	885	2	VAV1	19	6826646	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10		6826646	52302337	49	8804											
ZNF317	57693	mdanderson.org	37	chr19	9268706	9268706	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cacacttggagcaggaggagGagccgaggacagaggagagg	19	7	0	2	rs200289169		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_020933	exon5	c.G340T	p.E114X	GAGGAGGAGCCGA		40	3	0.08	39	0	0				11	0	0				T	9268706	G	T	9268706	4	4	120	1	0	0	0	0	0	1	0	0	17891	1175	41	3	354	3	ZNF317	19	9268706	Nonsense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10	2442060	9268706	49860277	50	8805											
MAST3	23031	mdanderson.org	37	chr19	18241320	18241320	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagggccgtctacctggtgCggcaccgtgacacacggcag	14	15	1	1	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_015016	exon13	c.C1153T	p.R385W	CTGGTGCGGCACC		51	3	0.06	50	0	0				7	0	0				T	18241320	C	T	18241320	3	4	120	1	0	0	0	0	1	0	0	0	9375	759	27	1	1203	1	MAST3	19	18241320	Missense_Mutation	SNP	C	TCGA-XE-AAOB-01A-11D-A435-10	8972614	18241320	40887663	51	8806											
MEGF8	1954	mdanderson.org	37	chr19	42873740	42873740	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgtgaacggctcatgtgtGgagcccgaccactgccgctg	14	13	1	1	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_001271938	exon38	c.G6699T	p.V2233V	ATGTGTGGAGCCC		34	3	0.09	43	0	0				10	0	0				T	42873740	G	T	42873740	2	4	120	1	0	0	0	0	0	0	0	1	9512	1335	47	3		3	MEGF8	19	42873740	Silent	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10	24632420	42873740	16255243	52	8807											
PPP2R1A	5518	mdanderson.org	37	chr19	52716240	52716240	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctggcggtggaggcgtgCgtgaacatcgcccagcttct	15	12	1	1	rs201531933	by1000genomes;alternate_allele	TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_014225	exon6	c.C684A	p.C228X	GGCGTGCGTGAAC		33	3	0.09	37	0	0				321	0	0				A	52716240	C	A	52716240	4	1	120	1	0	0	0	0	0	1	0	0	12430	776	27	1	706	1	PPP2R1A	19	52716240	Nonsense_Mutation	SNP	C	TCGA-XE-AAOB-01A-11D-A435-10	9842500	52716240	6412743	53	8808											
SOX12	0	broad.mit.edu	37	chr20	305267	305267	+	RNA	DEL	A	A	-													ttgggtggggcgacgcgcccAagtcgggcaccgggcaggct					novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	SOX12	.	.	.	.	GCGCCCAAGTCGG		6	2	0.33	4	0	0		8		0	0					-	305267	A	-	305267	6	5	120	0	1	1	0	1	0	0	0	0	14996	145	5	0		0	SOX12	20	305267	RNA	DEL	A	TCGA-XE-AAOB-01A-11D-A435-10		305267	62720253	54	8809											
DNMT3B	1789	mdanderson.org	37	chr20	31386384	31386384	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgctgtcatggcgtcctgCggcgccggaaggactggaac	16	12	1	0	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	DNMT3B_ENST00000201963,NS,carcinoma,0,4	DNMT3B_ENST00000201963	NM_006892	exon15	c.C1609T	p.R537W	GTCCTGCGGCGCC		53	3	0.06	66	0	0		0	4	430	0	0				T	31386384	C	T	31386384	3	4	120	1	0	0	0	0	1	0	0	0	4704	759	27	1	1703	1	DNMT3B	20	31386384	Missense_Mutation	SNP	C	TCGA-XE-AAOB-01A-11D-A435-10	31081117	31386384	31639136	55	8810											
OGFR	11054	broad.mit.edu	37	chr20	61443978	61443978	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gggccagagcatagcaagggTgggggcagggtggacgaggg	23	6	0	1	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	OGFR	NM_007346	exon7	c.T1011G	p.G337G	CAAGGGTGGGGGC		53	8	0.15	53	5	0.0943396226		63		91	4	0.04				G	61443978	T	G	61443978	2	3	120	1	0	0	0	0	0	0	0	1	10890	1683	59	4		4	OGFR	20	61443978	Silent	SNP	T	TCGA-XE-AAOB-01A-11D-A435-10	30057594	61443978	1581542	56	8811											
TRPM2	7226	mdanderson.org	37	chr21	45825863	45825863	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttctgcctccggctcatGcacatttttaccatcagtaa	6	13	3	0	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	TRPM2,right_upper_lobe,carcinoma,+1,1	TRPM2	NM_003307	exon18	c.G2733T	p.M911I	GCTCATGCACATT		43	3	0.07	24	0	0		1	1	13	0	0				T	45825863	G	T	45825863	3	4	120	1	0	0	0	0	1	0	0	0	16646	1319	46	2	2803	2	TRPM2	21	45825863	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10		45825863	2304032	57	8812											
TRPM2	7226	mdanderson.org	37	chr21	45861630	45861630	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atggcaggtggtggacaggcGcatcccactctatgcgaacc	13	12	1	0	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_003307	exon32	c.G4442T	p.R1481L	ACAGGCGCATCCC		49	3	0.06	35	0	0				77	0	0				T	45861630	G	T	45861630	3	4	120	1	0	0	0	0	1	0	0	0	16646	1087	38	1	4568	1	TRPM2	21	45861630	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10	35767	45861630	2268265	58	8813											
CBX6	23466	mdanderson.org	37	chr22	39262865	39262865	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggactttggggcgggccagCgccccggccccctgcccggc	17	18	0	0	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_014292	exon5	c.G588A	p.A196A	GGCCAGCGCCCCG		50	3	0.06	51	0	0				3	0	0				T	39262865	C	T	39262865	2	4	120	1	0	0	0	0	0	0	0	1	2740	755	27	1		1	CBX6	22	39262865	Silent	SNP	C	TCGA-XE-AAOB-01A-11D-A435-10		39262865	12041701	59	8814											
PORCN	64840	hgsc.bcm.edu	37	chrX	48374126	48374126	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttttcaagaatgctctccGcctggggaccttctcggctg	11	12	3	1	rs373433770	alternate_allele	TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_203475	exon10	c.G968T	p.R323L	CTCTCCGCCTGGG		140	6	0.04	143	0	0				21	0	0				T	48374126	G	T	48374126	3	4	120	1	0	0	0	0	1	0	0	0	12305	1087	38	1	1006	1	PORCN	23	48374126	Missense_Mutation	SNP	G	TCGA-XE-AAOB-01A-11D-A435-10		48374126	106896434	60	8815											
POF1B	79983	mdanderson.org	37	chrX	84634406	84634406	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cactgcagcacctctgggagCtgctgggttccacagctgct	12	14	1	0	novel		TCGA-XE-AAOB-01A-11D-A435-10	TCGA-XE-AAOB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ee51c341-2389-4d94-bcec-3032c60427d6	9cbd9079-ffd1-4fcd-a8bb-c0e2c4d1a594	.	.	NM_024921	exon2	c.G54A	p.Q18Q	TGGGAGCTGCTGG		53	3	0.06	63	0	0				1	0	0				T	84634406	C	T	84634406	2	4	120	1	0	0	0	0	0	0	0	1	12229	796	28	2		2	POF1B	23	84634406	Silent	SNP	C	TCGA-XE-AAOB-01A-11D-A435-10	36260280	84634406	70636154	61	8816											
PTGFRN	5738	mdanderson.org	37	chr1	117487540	117487540	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcgctaccacagtggggacGtgcgcctcgacaccgtgggc	15	14	0	0	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_020440	exon3	c.G658A	p.V220M	GGGGACGTGCGCC		43	3	0.07	26	0	0				10	0	0				A	117487540	G	A	117487540	3	1	121	1	0	0	0	0	1	0	0	0	12799	1145	40	1	668	1	PTGFRN	1	117487540	Missense_Mutation	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10		117487540	131763081	1	8817											
TTF2	8458	broad.mit.edu;bcgsc.ca	37	chr1	117644003	117644006	+	Splice_Site	DEL	TTTG	TTTG	-													ttttgtttttgttttttagaTttgtttgtgagggaacagta					novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	TTTG	TTTG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	TTF2	NM_003594	exon23	c.3346_3349del	p.1116_1117del	TTTAGATTTGTTT		47	10	0.21	42	0	0		92		28	0	0				-	117644006	TTTG	-	117644003	8	5	121	1	0	1	0	1	0	0	1	0	16780	1507	52	0	3436	0	TTF2	1	117644003	Splice_Site	DEL	TTTG	TCGA-XE-AAOC-01A-11D-A435-10	156463	117644003	131606618	2	8818											
TUFT1	7286	broad.mit.edu	37	chr1	151546805	151546805	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgtggcccttcagagagaGgaggacagagtggagcagaa	16	6	1	4	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	TUFT1	NM_020127	exon8	c.G654A	p.E218E	GAGAGAGGAGGAC		313	7	0.02	238	0	0		32		29	0	0				A	151546805	G	A	151546805	2	1	121	1	0	0	0	0	0	0	0	1	16833	991	35	3		3	TUFT1	1	151546805	Silent	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10	33902802	151546805	97703816	3	8819											
KDM5B	10765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	202710494	202710494	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagaagtctgctttttcaCctggccttgaggagactctt	10	9	3	3	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_006618	exon20	c.2945+1G>T	.	TTTTCACCTGGCC		75	17	0.23	44	0	0				1	0	0				A	202710494	C	A	202710494	5	1	121	1	0	0	0	0	0	0	1	0	8176	521	18	3	1724	3	KDM5B	1	202710494	Splice_Site	SNP	C	TCGA-XE-AAOC-01A-11D-A435-10	51163689	202710494	46540127	4	8820											
CDC42BPA	8476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	227335123	227335123	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcataaaatggtgtttctccGtaaagcatttcatacataca	6	8	2	0	rs139987030	byfrequency	TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_003607	exon7	c.C831T	p.Y277Y	TTCTCCGTAAAGC		270	70	0.26	132	0	0	0			21	3	0.14				A	227335123	G	A	227335123	2	1	121	1	0	0	0	0	0	0	0	1	3094	1140	40	1		1	CDC42BPA	1	227335123	Silent	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10	24624629	227335123	21915498	5	8821											
CLASP1	23332	mdanderson.org	37	chr2	122176293	122176293	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatgctgggtcgagggataCggctgctccgtgctagcgtg	16	10	1	0	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	CLASP1,NS,carcinoma,0,2	CLASP1	NM_015282	exon23	c.G2225A	p.R742H	GGGATACGGCTGC		44	3	0.07	32	0	0		0	2	0	0					T	122176293	C	T	122176293	3	4	121	1	0	0	0	0	1	0	0	0	3477	536	19	1	2487	1	CLASP1	2	122176293	Missense_Mutation	SNP	C	TCGA-XE-AAOC-01A-11D-A435-10		122176293	121023080	6	8822											
SP5	389058	broad.mit.edu;mdanderson.org	37	chr2	171573375	171573375	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgccggggccccccacgcgCcccgcttccccgcctctgcg	12	23	1	0	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	SP5	NM_001003845	exon2	c.C658T	p.P220S	CACGCGCCCCGCT		56	4	0.07	30	0	0		14		7	0	0				T	171573375	C	T	171573375	3	4	121	1	0	0	0	0	1	0	0	0	15020	739	26	2	664	2	SP5	2	171573375	Missense_Mutation	SNP	C	TCGA-XE-AAOC-01A-11D-A435-10	49397082	171573375	71625998	7	8823											
HOXD13	3239	mdanderson.org	37	chr2	176957866	176957866	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccgggacctctgagcgcaCgggctcttcctcgtcgtcgt	12	17	2	1	rs369711414		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_000523	exon1	c.C248T	p.T83M	AGCGCACGGGCTC		38	3	0.08	25	0	0				0	0					T	176957866	C	T	176957866	3	4	121	1	0	0	0	0	1	0	0	0	7362	536	19	1	250	1	HOXD13	2	176957866	Missense_Mutation	SNP	C	TCGA-XE-AAOC-01A-11D-A435-10	5384491	176957866	66241507	8	8824											
HOXD10	3236	mdanderson.org	37	chr2	176982179	176982179	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagatgaacgagcccgtgagCggccaggagcccaccaaagt	13	12	0	3	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_002148	exon1	c.C618T	p.S206S	CGTGAGCGGCCAG		79	4	0.05	75	0	0				5	0	0				T	176982179	C	T	176982179	2	4	121	1	0	0	0	0	0	0	0	1	7359	767	27	1		1	HOXD10	2	176982179	Silent	SNP	C	TCGA-XE-AAOC-01A-11D-A435-10	24313	176982179	66217194	9	8825											
PLCL1	5334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	198949565	198949565	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaatgggctgtcgaagcGttgaactcgatgtaagtgat	13	5	0	3	rs201197388	bycluster	TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	PLCL1_ENST00000428675,right_upper_lobe,carcinoma,0,2	PLCL1_ENST00000428675	NM_006226	exon2	c.G1324A	p.V442I	CGAAGCGTTGAAC		122	39	0.32	133	0	0	0.001	0	2	5	2	0.4				A	198949565	G	A	198949565	3	1	121	1	0	0	0	0	1	0	0	0	12086	1145	40	1	1330	1	PLCL1	2	198949565	Missense_Mutation	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10	21967386	198949565	44249808	10	8826											
ARPC2	10109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	219103519	219103519	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atacttccaattccaagaagAgggcaaggaaggagagaaca	11	7	0	3	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_005731	exon5	c.A401C	p.E134A	AAGAAGAGGGCAA		306	89	0.29	233	0	0				809	268	0.33				C	219103519	A	C	219103519	3	2	121	1	0	0	0	0	1	0	0	0	970	304	11	4	419	4	ARPC2	2	219103519	Missense_Mutation	SNP	A	TCGA-XE-AAOC-01A-11D-A435-10	20153954	219103519	24095854	11	8827											
TTLL4	9654	broad.mit.edu	37	chr2	219617499	219617499	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	accacaggacttctatgcatCtgtgctggatgtcctgacac	9	12	2	1	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	TTLL4	NM_014640	exon17	c.C2990T	p.S997F	ATGCATCTGTGCT		135	4	0.03	121	0	0		96		65	1	0.02				T	219617499	C	T	219617499	3	4	121	1	0	0	0	0	1	0	0	0	16790	913	32	3	3048	3	TTLL4	2	219617499	Missense_Mutation	SNP	C	TCGA-XE-AAOC-01A-11D-A435-10	513980	219617499	23581874	12	8828											
SPEG	10290	mdanderson.org	37	chr2	220343903	220343903	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagcgaatcgccaggaaaCccaccgtgtgtgagtctgag	14	10	1	2	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_005876	exon23	c.C5065T	p.P1689S	AGGAAACCCACCG		39	3	0.08	32	0	0				15	0	0				T	220343903	C	T	220343903	3	4	121	1	0	0	0	0	1	0	0	0	15091	507	18	3	5167	3	SPEG	2	220343903	Missense_Mutation	SNP	C	TCGA-XE-AAOC-01A-11D-A435-10	726404	220343903	22855470	13	8829											
PTMA	5757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	232576664	232576664	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagaggaagaaggtggggAggaagaggaggaggaagaag	22	0	0	5	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001099285	exon3	c.A185G	p.E62G	GTGGGGAGGAAGA		82	18	0.22	53	0	0				2865	654	0.23				G	232576664	A	G	232576664	3	3	121	1	0	0	0	0	1	0	0	0	12815	304	11	4	195	4	PTMA	2	232576664	Missense_Mutation	SNP	A	TCGA-XE-AAOC-01A-11D-A435-10	12232761	232576664	10622709	14	8830											
UGT1A4	54657	mdanderson.org	37	chr2	234628241	234628241	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	catccgtgtggctgttccgaGgggactttgtgatggactac	14	9	0	1	rs200363835	bycluster;by1000genomes	TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_007120	exon1	c.G775C	p.G259R	TTCCGAGGGGACT		166	7	0.04	139	1	0.0071942446	0.003			0	0					C	234628241	G	C	234628241	3	2	121	1	0	0	0	0	1	0	0	0	17006	1000	35	5	777	5	UGT1A4	2	234628241	Missense_Mutation	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10	2051577	234628241	8571132	15	8831											
NFKBIZ	64332	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	101572306	101572306	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaactctggaatacagtccTtttcccatacctccccagtc	4	17	1	0	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	NFKBIZ	NM_031419	exon5	c.T936C	p.P312P	CAGTCCTTTTCCC		138	5	0.04	108	0	0		55		7	0	0				C	101572306	T	C	101572306	2	2	121	1	0	0	0	0	0	0	0	1	10429	1596	56	4		4	NFKBIZ	3	101572306	Silent	SNP	T	TCGA-XE-AAOC-01A-11D-A435-10		101572306	96450124	16	8832											
EPHB1	2047	mdanderson.org	37	chr3	134968244	134968244	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttaccaccgtggatgactgGctcagcgccatcaaaatggt	10	11	2	1	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	EPHB1_ENST00000398015,face,malignant_melanoma,0,2	EPHB1_ENST00000398015	NM_004441	exon15	c.G2757T	p.W919C	TGACTGGCTCAGC		48	3	0.06	53	0	0		0	2	159	0	0				T	134968244	G	T	134968244	3	4	121	1	0	0	0	0	1	0	0	0	5202	1212	42	2	2815	2	EPHB1	3	134968244	Missense_Mutation	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10	33395938	134968244	63054186	17	8833											
RGS12	6002	mdanderson.org	37	chr4	3422429	3422429	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagggctctgtgtcctctgCggggagcctggacctggtga	17	11	2	1	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_002926	exon10	c.C2822T	p.A941V	CCTCTGCGGGGAG		48	3	0.06	39	0	0				55	0	0				T	3422429	C	T	3422429	3	4	121	1	0	0	0	0	1	0	0	0	13344	768	27	1	2914	1	RGS12	4	3422429	Missense_Mutation	SNP	C	TCGA-XE-AAOC-01A-11D-A435-10		3422429	187731847	18	8834											
GNRHR	2798	mdanderson.org	37	chr4	68619536	68619536	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtataatggcttacctgtGgtcctgcaaagacactactg	10	9	0	1	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001012763	exon1	c.C518A	p.P173Q	ACCTGTGGTCCTG		51	3	0.06	63	0	0				0	0					T	68619536	G	T	68619536	3	4	121	1	0	0	0	0	1	0	0	0	6590	1348	47	3	480	3	GNRHR	4	68619536	Missense_Mutation	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10	65197107	68619536	122534740	19	8835											
ARSB	411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	78251240	78251240	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgatgcctgttcttgtctTggataaagtcatatggcttc	10	7	3	1	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_198709	exon5	c.A776G	p.Q259R	TTGTCTTGGATAA		98	39	0.4	146	0	0				25	10	0.4				C	78251240	T	C	78251240	3	2	121	1	0	0	0	0	1	0	0	0	987	1812	63	4	878	4	ARSB	5	78251240	Missense_Mutation	SNP	T	TCGA-XE-AAOC-01A-11D-A435-10		78251240	102664020	20	8836											
POU4F3	5459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	145719235	145719235	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccgacgccacctaccataCcatgagcagcgtgccctgca	9	18	0	1	rs145218099	alternate_allele	TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_002700	exon2	c.C245A	p.T82N	ACCATACCATGAG		68	31	0.46	94	0	0				0	0					A	145719235	C	A	145719235	3	1	121	1	0	0	0	0	1	0	0	0	12325	507	18	3	251	3	POU4F3	5	145719235	Missense_Mutation	SNP	C	TCGA-XE-AAOC-01A-11D-A435-10	67467995	145719235	35196025	21	8837											
SLIT3	6586	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	168678411	168678411	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caagactcggaggttcttgaGcccagcgaagtccatcttgg	12	11	2	2	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	SLIT3	NM_001271946	exon2	c.C250A	p.L84I	TCTTGAGCCCAGC		44	4	0.09	67	0	0		224		1	0	0				T	168678411	G	T	168678411	3	4	121	1	0	0	0	0	1	0	0	0	14794	971	34	2	4461	2	SLIT3	5	168678411	Missense_Mutation	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10	22959176	168678411	12236849	22	8838											
HIST1H3G	8355	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	26271526	26271526	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acgccgccggtggccggcgcGcttttccgagccgccttagt	14	16	0	0	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	HIST1H3G	NM_003534	exon1	c.C87T	p.S29S	CGGCGCGCTTTTC		86	48	0.56	75	1	0.0133333333		20		4	3	0.75				A	26271526	G	A	26271526	2	1	121	1	0	0	0	0	0	0	0	1	7201	1078	38	1		1	HIST1H3G	6	26271526	Silent	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10		26271526	144843541	23	8839											
TRERF1	55809	mdanderson.org	37	chr6	42227154	42227154	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgggcgccagggccgtggCcggagatgaggacattgctg	20	9	0	2	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_033502	exon9	c.G2192A	p.G731D	CCGTGGCCGGAGA		13	2	0.15	11	0	0				6	0	0				T	42227154	C	T	42227154	3	4	121	1	0	0	0	0	1	0	0	0	16535	739	26	2	1450	2	TRERF1	6	42227154	Missense_Mutation	SNP	C	TCGA-XE-AAOC-01A-11D-A435-10	15955628	42227154	128887913	24	8840											
MED23	9439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	131931259	131931259	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	caaagaaaatgagctgacttGagagatgctgccacaggagt	12	7	0	5	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_015979	exon12	c.C1022T	p.S341L	TGACTTGAGAGAT		108	73	0.68	106	0	0				14	9	0.64				A	131931259	G	A	131931259	3	1	121	1	0	0	0	0	1	0	0	0	9490	1294	45	3	3185	3	MED23	6	131931259	Missense_Mutation	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10	89704105	131931259	39183808	25	8841											
BAZ1B	9031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	72861685	72861685	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatcatcttcactgtcctcAgaagcagactcttcagtata	5	12	7	2	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_032408	exon16	c.T3753C	p.S1251S	GTCCTCAGAAGCA		58	25	0.43	87	0	0				72	27	0.38				G	72861685	A	G	72861685	2	3	121	1	0	0	0	0	0	0	0	1	1328	175	7	4		4	BAZ1B	7	72861685	Silent	SNP	A	TCGA-XE-AAOC-01A-11D-A435-10		72861685	86276978	26	8842											
PCLO	27445	mdanderson.org	37	chr7	82583012	82583012	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgggggaggagggggtggTggtggaggaggaggaggagg	30	0	0	0	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_014510	exon5	c.A7257C	p.P2419P	GGGTGGTGGTGGA		12	3	0.25	18	6	0.3333333333				0	0					G	82583012	T	G	82583012	2	3	121	1	0	0	0	0	0	0	0	1	11629	1683	59	4		4	PCLO	7	82583012	Silent	SNP	T	TCGA-XE-AAOC-01A-11D-A435-10	9721327	82583012	76555651	27	8843											
NAPEPLD	222236	bcgsc.ca	37	chr7	102760577	102760577	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cattaccgtggcatgtcccaGccatgtgactcttaagccag	9	13	1	1	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	NAPEPLD	NM_001122838	exon3	c.C388A	p.L130M	GTCCCAGCCATGT		50	4	0.08	76	0	0		49		12	0	0				T	102760577	G	T	102760577	3	4	121	1	0	0	0	0	1	0	0	0	10210	962	34	2	805	2	NAPEPLD	7	102760577	Missense_Mutation	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10	20177565	102760577	56378086	28	8844											
NAMPT	10135	broad.mit.edu	37	chr7	105893479	105893479	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atacctgaccatattcctcaAggtctccttttccttcctcc	3	16	2	1	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	NAMPT	NM_005746	exon10	c.T1349C	p.L450P	TCCTCAAGGTCTC		186	5	0.03	246	0	0		37		68	0	0				G	105893479	A	G	105893479	3	3	121	1	0	0	0	0	1	0	0	0	10196	72	3	4	134	4	NAMPT	7	105893479	Missense_Mutation	SNP	A	TCGA-XE-AAOC-01A-11D-A435-10	3132902	105893479	53245184	29	8845											
OR2A25	392138	bcgsc.ca;mdanderson.org	37	chr7	143771911	143771911	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taatgaggtaatggttttggCaggggcagtgtctgtgctgg	17	4	1	1	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	OR2A25	NM_001004488	exon1	c.C599T	p.A200V	TTTTGGCAGGGGC		105	5	0.05	127	0	0		66		0	0					T	143771911	C	T	143771911	3	4	121	1	0	0	0	0	1	0	0	0	11025	710	25	2	601	2	OR2A25	7	143771911	Missense_Mutation	SNP	C	TCGA-XE-AAOC-01A-11D-A435-10	37878432	143771911	15366752	30	8846											
ESYT2	57488	bcgsc.ca	37	chr7	158552222	158552222	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaagatcagcaatgcagaGgaaagaccatcgttggcttg	11	8	1	3	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	ESYT2,colon,carcinoma,-2,1	ESYT2	NM_020728	exon13	c.C1518A	p.S506S	TGCAGAGGAAAGA		48	4	0.08	69	0	0		70	1	44	0	0				T	158552222	G	T	158552222	2	4	121	1	0	0	0	0	0	0	0	1	5293	987	35	3		3	ESYT2	7	158552222	Silent	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10	14780311	158552222	586441	31	8847											
LYPLA1	10434	mdanderson.org	37	chr8	54965242	54965242	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggaagcccgaagtggaagCcagcaactgagtgcagtgac	14	9	0	2	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	LYPLA1,colon,carcinoma,0,2	LYPLA1	NM_006330	exon7	c.G435A	p.W145X	TGGAAGCCAGCAA		46	3	0.07	60	0	0		0	2	53	0	0				T	54965242	C	T	54965242	4	4	121	1	0	0	0	0	0	1	0	0	9161	740	26	2	269	2	LYPLA1	8	54965242	Nonsense_Mutation	SNP	C	TCGA-XE-AAOC-01A-11D-A435-10		54965242	91398780	32	8848											
GSDMD	79792	mdanderson.org	37	chr8	144644277	144644277	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtgctgcgggaccagctGgccctgcgagccttggagga	19	11	0	0	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001166237	exon11	c.G972T	p.L324L	CCAGCTGGCCCTG		18	2	0.11	15	0	0				31	0	0				T	144644277	G	T	144644277	2	4	121	1	0	0	0	0	0	0	0	1	6859	1335	47	3		3	GSDMD	8	144644277	Silent	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10	89679035	144644277	1719745	33	8849											
KIFC2	90990	mdanderson.org	37	chr8	145692490	145692490	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggggcccggcggacctgggCcaggtgagcgcggcggaggg	24	11	0	1	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_145754	exon3	c.C327T	p.G109G	CCTGGGCCAGGTG		31	3	0.1	57	0	0				25	0	0				T	145692490	C	T	145692490	2	4	121	1	0	0	0	0	0	0	0	1	8354	726	26	2		2	KIFC2	8	145692490	Silent	SNP	C	TCGA-XE-AAOC-01A-11D-A435-10	1048213	145692490	671532	34	8850											
PPP1R16A	84988	mdanderson.org	37	chr8	145722649	145722649	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcacacaggagcggctgaaGcatgcccagaagcggcgcgc	15	13	0	2	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_032902	exon1	c.G72T	p.K24N	GCTGAAGCATGCC		36	3	0.08	35	0	0				109	0	0				T	145722649	G	T	145722649	3	4	121	1	0	0	0	0	1	0	0	0	12413	962	34	2	74	2	PPP1R16A	8	145722649	Missense_Mutation	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10	30159	145722649	641373	35	8851											
TAF1L	138474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	32632961	32632961	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttgaatccatccctgtgcGtttgaagtcagcgcagagct	11	10	1	3	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	TAF1L,rectum,carcinoma,0,2	TAF1L	NM_153809	exon1	c.C2617T	p.R873C	CTGTGCGTTTGAA		372	115	0.31	332	0	0		0	2	1	0	0				A	32632961	G	A	32632961	3	1	121	1	0	0	0	0	1	0	0	0	15579	1145	40	1	2867	1	TAF1L	9	32632961	Missense_Mutation	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10		32632961	108580470	36	8852											
NIPSNAP3A	25934	bcgsc.ca	37	chr9	107510105	107510105	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaagcgccctgactcgggCgctggcctcacggacgctgg	15	15	1	2	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	NIPSNAP3A	NM_015469	exon1	c.C32T	p.A11V	CTCGGGCGCTGGC		30	4	0.13	37	0	0		18		54	0	0				T	107510105	C	T	107510105	3	4	121	1	0	0	0	0	1	0	0	0	10476	768	27	1	34	1	NIPSNAP3A	9	107510105	Missense_Mutation	SNP	C	TCGA-XE-AAOC-01A-11D-A435-10	74877144	107510105	33703326	37	8853											
PIP5KL1	138429	mdanderson.org	37	chr9	130687406	130687406	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggccgtgcggaagatgagGctgctgcccgggcccctctc	15	15	1	2	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001135219	exon9	c.C897A	p.S299R	GATGAGGCTGCTG		46	3	0.07	68	0	0				7	0	0				T	130687406	G	T	130687406	3	4	121	1	0	0	0	0	1	0	0	0	11989	1194	42	2	295	2	PIP5KL1	9	130687406	Missense_Mutation	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10	23177301	130687406	10526025	38	8854											
PIP5KL1	138429	mdanderson.org	37	chr9	130692148	130692148	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctctgcatccagcctcaGgggagggggccaggacctgg	16	13	2	0	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001135219	exon2	c.C47A	p.P16H	GCCTCAGGGGAGG		24	2	0.08	26	0	0				0	0					T	130692148	G	T	130692148	3	4	121	1	0	0	0	0	1	0	0	0	11989	1000	35	3	1173	3	PIP5KL1	9	130692148	Missense_Mutation	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10	4742	130692148	10521283	39	8855											
GPR158	57512	mdanderson.org	37	chr10	25883231	25883231	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatttcagatttgttcttGcctcaagacttcagtctgat	6	10	6	3	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_020752	exon9	c.G1903T	p.A635S	GTTCTTGCCTCAA		48	3	0.06	51	1	0.0196078431				0	0					T	25883231	G	T	25883231	3	4	121	1	0	0	0	0	1	0	0	0	6702	1319	46	2	1937	2	GPR158	10	25883231	Missense_Mutation	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10		25883231	109651516	40	8856											
TNKS2	80351	mdanderson.org	37	chr10	93617191	93617191	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attttttatagattcagaagGtttgtaacaagaaactatgg	8	3	1	3	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_025235	exon24	c.G2998T	p.V1000F	CAGAAGGTTTGTA		51	3	0.06	79	0	0				44	0	0				T	93617191	G	T	93617191	3	4	121	1	0	0	0	0	1	0	0	0	16380	1261	44	3	3092	3	TNKS2	10	93617191	Missense_Mutation	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10	67733960	93617191	41917556	41	8857											
B4GALNT4	338707	mdanderson.org	37	chr11	375478	375478	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtggcgagctttcctgccCggcctgaagttcgaggtcat	13	12	1	1	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	B4GALNT4,NS,carcinoma,0,1	B4GALNT4	NM_178537	exon9	c.C801T	p.P267P	CCTGCCCGGCCTG		43	3	0.07	49	0	0		0	1	203	1	0				T	375478	C	T	375478	2	4	121	1	0	0	0	0	0	0	0	1	1267	639	23	1		1	B4GALNT4	11	375478	Silent	SNP	C	TCGA-XE-AAOC-01A-11D-A435-10		375478	134631038	42	8858											
TTC17	55761	mdanderson.org	37	chr11	43469622	43469622	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaaactccgctgggtagaGctgactgccatcgtgagtac	11	12	1	3	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_018259	exon19	c.G2736T	p.E912D	GGTAGAGCTGACT		45	3	0.07	62	0	0				74	0	0				T	43469622	G	T	43469622	3	4	121	1	0	0	0	0	1	0	0	0	16745	962	34	2	2810	2	TTC17	11	43469622	Missense_Mutation	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10	43094144	43469622	91536894	43	8859											
LRP4	4038	mdanderson.org	37	chr11	46918500	46918500	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaggacaggcggacacagCggcctgagtgacagcggaac	16	12	0	2	rs146670859		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_002334	exon8	c.G842A	p.R281H	ACACAGCGGCCTG		39	3	0.08	60	0	0	0			4	0	0				T	46918500	C	T	46918500	3	4	121	1	0	0	0	0	1	0	0	0	9003	768	27	1	4999	1	LRP4	11	46918500	Missense_Mutation	SNP	C	TCGA-XE-AAOC-01A-11D-A435-10	3448878	46918500	88088016	44	8860											
TCIRG1	10312	mdanderson.org	37	chr11	67817183	67817183	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggccatggtgcccatcctGctgcttggcacacccctgca	10	16	0	0	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_006019	exon16	c.G1941A	p.L647L	CATCCTGCTGCTT		14	2	0.14	28	0	0				103	0	0				A	67817183	G	A	67817183	2	1	121	1	0	0	0	0	0	0	0	1	15762	1306	46	2		2	TCIRG1	11	67817183	Silent	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10	20898683	67817183	67189333	45	8861											
AQP11	282679	mdanderson.org	37	chr11	77320415	77320415	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caaccatacaattaataaaaAggaataactgttccaaagac	4	8	0	1	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_173039	exon3	c.A809G	p.K270R	ATAAAAAGGAATA		38	3	0.08	54	0	0				19	0	0				G	77320415	A	G	77320415	3	3	121	1	0	0	0	0	1	0	0	0	820	72	3	4	819	4	AQP11	11	77320415	Missense_Mutation	SNP	A	TCGA-XE-AAOC-01A-11D-A435-10	9503232	77320415	57686101	46	8862											
KDM5A	5927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	432911	432911	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgccgctcatcatcaggaaCaagttcaaacacttcttctt	5	13	6	0	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001042603	exon15	c.G2005A	p.V669I	CAGGAACAAGTTC		316	62	0.2	177	0	0				43	4	0.09				T	432911	C	T	432911	3	4	121	1	0	0	0	0	1	0	0	0	8175	478	17	3	3123	3	KDM5A	12	432911	Missense_Mutation	SNP	C	TCGA-XE-AAOC-01A-11D-A435-10		432911	133418984	47	8863											
AEBP2	121536	mdanderson.org	37	chr12	19593200	19593200	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcggcggcgacgagggctaCgggactgggggaggcggaag	23	8	0	0	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001114176	exon1	c.C567T	p.Y189Y	GGGCTACGGGACT		16	2	0.13	9	0	0				15	0	0				T	19593200	C	T	19593200	2	4	121	1	0	0	0	0	0	0	0	1	349	547	19	1		1	AEBP2	12	19593200	Silent	SNP	C	TCGA-XE-AAOC-01A-11D-A435-10	19160289	19593200	114258695	48	8864											
HSP90B1	7184	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	104333319	104333319	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gtctgggactgggaacttatGaatgatatcaaaccaatatg	10	6	2	2	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	HSP90B1	NM_003299	exon8	c.G1008A	p.M336I	ACTTATGAATGAT		242	23	0.1	238	1	0.0042016807		72		1078	191	0.18				A	104333319	G	A	104333319	3	1	121	1	0	0	0	0	1	0	0	0	7445	1290	45	3	1038	3	HSP90B1	12	104333319	Missense_Mutation	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10	84740119	104333319	29518576	49	8865											
PDS5B	23047	mdanderson.org	37	chr13	33222915	33222915	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaatatttctgtcatggcTcattcaaagactaggaccaa	7	8	4	2	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_015032	exon2	c.T6C	p.A2A	CATGGCTCATTCA		37	3	0.08	41	0	0				5	0	0				C	33222915	T	C	33222915	2	2	121	1	0	0	0	0	0	0	0	1	11738	1538	54	4		4	PDS5B	13	33222915	Silent	SNP	T	TCGA-XE-AAOC-01A-11D-A435-10		33222915	81946963	50	8866											
CTSG	1511	mdanderson.org	37	chr14	25043631	25043631	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccacagtgcacagcgtcccGggtctcagtccctcctgggc	12	17	1	0	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001911	exon4	c.C414A	p.P138P	CGTCCCGGGTCTC		43	3	0.07	37	0	0				5	0	0				T	25043631	G	T	25043631	2	4	121	1	0	0	0	0	0	0	0	1	4059	1103	39	1		1	CTSG	14	25043631	Silent	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10		25043631	82305909	51	8867											
ATXN3	4287	hgsc.bcm.edu	37	chr14	92537354	92537355	+	In_Frame_Ins	INS	-	-	CTG													ctctgtcctgataggtccccINSctgctgctgctgctgctgct					rs76478261		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	ATXN3,NS,carcinoma,0,7	ATXN3	NM_004993	exon10	c.916_917insCAG	p.G306delinsQG	GGTCCCCCTGCTG		81	29	0.36	55	0	0		46		23	0	0				CTG	92537355	-	CTG	92537354	7	5	121	1	0	1	1	0	0	0	0	0	1211	623	22	0	177	0	ATXN3	14	92537354	In_Frame_Ins	INS	-	TCGA-XE-AAOC-01A-11D-A435-10	67493723	92537354	14812186	52	8868											
XRCC3	7517	mdanderson.org	37	chr14	104169621	104169621	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggccatgagctgctgcagGcgcttgtgcgggaaggcgtc	18	10	0	1	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001100119	exon7	c.C450A	p.R150R	CTGCAGGCGCTTG		35	3	0.09	26	0	0				19	0	0				T	104169621	G	T	104169621	2	4	121	1	0	0	0	0	0	0	0	1	17513	1190	42	2		2	XRCC3	14	104169621	Silent	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10	11632267	104169621	3179919	53	8869											
TYRO3	7301	mdanderson.org	37	chr15	41859673	41859673	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacagcctcagggtgcgctGtgccaatgccttggggccct	13	14	1	0	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_006293	exon7	c.G899T	p.C300F	TGCGCTGTGCCAA		46	3	0.07	57	0	0				32	0	0				T	41859673	G	T	41859673	3	4	121	1	0	0	0	0	1	0	0	0	16875	1377	48	3	925	3	TYRO3	15	41859673	Missense_Mutation	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10		41859673	60671719	54	8870											
IL4R	3566	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	27353570	27353570	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttgtaccagctggtttttCtgctctccgagtaagcctgc	10	11	2	0	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_000418	exon4	c.C199T	p.L67L	GTTTTTCTGCTCT		151	8	0.05	113	0	0				22	0	0				T	27353570	C	T	27353570	2	4	121	1	0	0	0	0	0	0	0	1	7741	912	32	3		3	IL4R	16	27353570	Silent	SNP	C	TCGA-XE-AAOC-01A-11D-A435-10		27353570	63001183	55	8871											
RANBP10	57610	broad.mit.edu;bcgsc.ca	37	chr16	67762301	67762301	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cgtggctctcacccatgctgGactcatccgtctgcaggtcc	10	16	3	0	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	RANBP10	NM_020850	exon11	c.C1466A	p.S489Y	ATGCTGGACTCAT		65	21	0.32	49	1	0.0204081633		56		32	4	0.13				T	67762301	G	T	67762301	3	4	121	1	0	0	0	0	1	0	0	0	13077	1174	41	3	412	3	RANBP10	16	67762301	Missense_Mutation	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10	40408731	67762301	22592452	56	8872											
CRK	1398	mdanderson.org	37	chr17	1359235	1359235	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgctgctgttgatgatgtaGtgggagacgcgcgagttctc	15	9	1	3	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_005206	exon1	c.C177A	p.H59Q	GATGTAGTGGGAG		47	3	0.06	51	0	0				30	0	0				T	1359235	G	T	1359235	3	4	121	1	0	0	0	0	1	0	0	0	3907	1020	36	3	749	3	CRK	17	1359235	Missense_Mutation	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10		1359235	79835975	57	8873											
SLFN12	55106	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	33749877	33749877	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaatttcagccttgatcacTccccctccagaattgagcag	6	14	3	3	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	SLFN12	NM_018042	exon2	c.A171G	p.G57G	GATCACTCCCCCT		159	6	0.04	118	0	0		56		2	0	0				C	33749877	T	C	33749877	2	2	121	1	0	0	0	0	0	0	0	1	14788	1538	54	4		4	SLFN12	17	33749877	Silent	SNP	T	TCGA-XE-AAOC-01A-11D-A435-10	32390642	33749877	47445333	58	8874											
NUP85	79902	mdanderson.org	37	chr17	73208158	73208158	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaatgcaccaggttgcaaGtaaggactgtgtgcgcgtgc	15	8	0	0	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_024844	exon4	c.361+1G>T	.	TTGCAAGTAAGGA		51	3	0.06	31	0	0				0	0					T	73208158	G	T	73208158	5	4	121	1	0	0	0	0	0	0	1	0	10817	1043	36	3	376	3	NUP85	17	73208158	Splice_Site	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10	39458281	73208158	7987052	59	8875											
ESCO1	114799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	19153599	19153600	+	Frame_Shift_Del	DEL	CA	CA	-													gagtccaacttattgtgctgCacagagttaaattttgagag					novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	CA	CA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	ESCO1	NM_052911	exon4	c.1206_1207del	p.402_403del	GTGCTGCACAGAG		131	17	0.13	139	0	0		89		13	0	0				-	19153600	CA	-	19153599	7	5	121	1	0	1	0	1	0	0	0	0	5276	697	25	0	1352	0	ESCO1	18	19153599	Frame_Shift_Del	DEL	CA	TCGA-XE-AAOC-01A-11D-A435-10		19153599	58923649	60	8876											
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	50278479	50278479	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctcagaaccttctgatgcCgtcacaatgcggggaggaaa	11	11	3	2	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_005215	exon2	c.C147T	p.A49A	TGATGCCGTCACA		63	12	0.19	94	0	0				6	2	0.33				T	50278479	C	T	50278479	2	4	121	1	0	0	0	0	0	0	0	1	4305	639	23	1		1	DCC	18	50278479	Silent	SNP	C	TCGA-XE-AAOC-01A-11D-A435-10	31124880	50278479	27798769	61	8877											
CYP4F8	11283	hgsc.bcm.edu	37	chr19	15733939	15733939	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cccagtgaatatattactgcGatcatggagctcagtgccct	9	11	2	1	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	.	.	.	.	TACTGCGATCATG		85	4	0.05	83	0	0				0	0					T	15733939	G	T	15733939	2	4	121	1	0	0	0	0	0	0	0	1	4214	1045	37	1		1	CYP4F8	19	15733939	Silent	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10		15733939	43395044	62	8878											
SIGLEC1	6614	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	3673381	3673381	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cactgtgatgggggcaccttCaggcacggcagcctccggag	15	13	1	1	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	SIGLEC1	NM_023068	exon15	c.G3817A	p.E1273K	CACCTTCAGGCAC		36	5	0.14	37	0	0		210		7	0	0				T	3673381	C	T	3673381	3	4	121	1	0	0	0	0	1	0	0	0	14359	835	29	3	1340	3	SIGLEC1	20	3673381	Missense_Mutation	SNP	C	TCGA-XE-AAOC-01A-11D-A435-10		3673381	59352139	63	8879											
KIF16B	55614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	16385486	16385486	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atacaacatgactgcagacaGgttctcacgggacttcgaga	10	10	1	3	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001199865	exon17	c.C1756T	p.L586L	CAGACAGGTTCTC		74	12	0.16	59	0	0				17	1	0.06				A	16385486	G	A	16385486	2	1	121	1	0	0	0	0	0	0	0	1	8319	991	35	3		3	KIF16B	20	16385486	Silent	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10	12712105	16385486	46640034	64	8880											
PCK1	5105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	56137903	56137903	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcctggaagcagtgggcgaTggggagtttgtcaaatgcct	16	7	1	0	rs201469307	by1000genomes	TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_002591	exon4	c.T558C	p.D186D	GGGCGATGGGGAG		133	33	0.25	149	0	0	0			0	0					C	56137903	T	C	56137903	2	2	121	1	0	0	0	0	0	0	0	1	11627	1461	51	4		4	PCK1	20	56137903	Silent	SNP	T	TCGA-XE-AAOC-01A-11D-A435-10	39752417	56137903	6887617	65	8881											
LRRC3	81543	mdanderson.org	37	chr21	45876537	45876537	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcaggtcaggatgggcaccGtgcgcccacctcgcccctcg	13	17	2	0	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_030891	exon2	c.G10A	p.V4M	GGCACCGTGCGCC		26	2	0.08	15	0	0				8	0	0				A	45876537	G	A	45876537	3	1	121	1	0	0	0	0	1	0	0	0	9028	1145	40	1	12	1	LRRC3	21	45876537	Missense_Mutation	SNP	G	TCGA-XE-AAOC-01A-11D-A435-10		45876537	2253358	66	8882											
FAM19A5	25817	mdanderson.org	37	chr22	49042516	49042516	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgtgcgtgtagaaaggggCagatcgccggcaccacgaga	16	10	0	3	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001082967	exon2	c.C220T	p.Q74X	AAGGGGCAGATCG		22	3	0.14	24	0	0				47	0	0				T	49042516	C	T	49042516	4	4	121	1	0	0	0	0	0	1	0	0	5566	711	25	2	321	2	FAM19A5	22	49042516	Nonsense_Mutation	SNP	C	TCGA-XE-AAOC-01A-11D-A435-10		49042516	2262050	67	8883											
CROCC	9696	mdanderson.org	37	chr1	17294828	17294828	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggcgctcgcttgagggggAgctgcagcgcagccgcctgg	19	13	0	1	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_014675	exon31	c.A4991G	p.E1664G	AGGGGGAGCTGCA		69	4	0.06	84	0	0				38	0	0				G	17294828	A	G	17294828	3	3	122	1	0	0	0	0	1	0	0	0	3916	304	11	4	5113	4	CROCC	1	17294828	Missense_Mutation	SNP	A	TCGA-XE-AAOD-01A-11D-A435-10		17294828	231955793	1	8884											
CPSF3	51692	broad.mit.edu	37	chr2	9568893	9568893	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccccttgaatatttacaGtggagctgggcaagaagtag	11	8	1	2	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	CPSF3	NM_016207	exon2	c.51-1G>T	.	TTTACAGTGGAGC		228	5	0.02	274	0	0		63		0	0					T	9568893	G	T	9568893	5	4	122	1	0	0	0	0	0	0	1	0	3849	1043	36	3	56	3	CPSF3	2	9568893	Splice_Site	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10		9568893	233630480	2	8885											
ASXL2	55252	mdanderson.org	37	chr2	25994311	25994311	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagactagcaatgcttacctGctttagtgccttcttgctgt	8	11	1	1	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_018263	exon5	c.C502A	p.Q168K	TTACCTGCTTTAG		130	5	0.04	126	0	0				8	0	0				T	25994311	G	T	25994311	3	4	122	1	0	0	0	0	1	0	0	0	1066	1328	46	2	3837	2	ASXL2	2	25994311	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	16425418	25994311	217205062	3	8886											
THADA	63892	broad.mit.edu	37	chr2	43793648	43793648	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaaataatgatcaatgaaaAgggagatagtttcttcctct	8	6	3	3	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	THADA	.	.	.	.	ATGAAAAGGGAGA		197	4	0.02	188	0	0		131		0	0					G	43793648	A	G	43793648	3	3	122	1	0	0	0	0	1	0	0	0	15899	87	3	4		4	THADA	2	43793648	Missense_Mutation	SNP	A	TCGA-XE-AAOD-01A-11D-A435-10	17799337	43793648	199405725	4	8887											
CCT4	10575	mdanderson.org	37	chr2	62110604	62110604	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacacttaccattctggctGctggatgtaatacttgcatt	7	9	1	0	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_006430	exon3	c.C260A	p.A87E	CTGGCTGCTGGAT		29	2	0.07	34	0	0				524	0	0				T	62110604	G	T	62110604	3	4	122	1	0	0	0	0	1	0	0	0	2977	1319	46	2	1407	2	CCT4	2	62110604	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	18316956	62110604	181088769	5	8888											
QARS	5859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	49139869	49139869	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	taccttgaacttcttctccaGatcagcctccaacttggggc	7	14	3	2	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_005051	exon6	c.C553T	p.L185L	TCTCCAGATCAGC		91	10	0.11	144	0	0				350	115	0.33				A	49139869	G	A	49139869	2	1	122	1	0	0	0	0	0	0	0	1	12922	933	33	3		3	QARS	3	49139869	Silent	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10		49139869	148882561	6	8889											
IFRD2	7866	mdanderson.org	37	chr3	50329785	50329785	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caacgagacgccggccggtgCgctgcgctgagacttggcca	15	14	0	2	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_006764	exon1	c.G113A	p.R38H	CCGGTGCGCTGCG		22	2	0.09	23	0	0				13	0	0				T	50329785	C	T	50329785	3	4	122	1	0	0	0	0	1	0	0	0	7597	768	27	1	1455	1	IFRD2	3	50329785	Missense_Mutation	SNP	C	TCGA-XE-AAOD-01A-11D-A435-10	1189916	50329785	147692645	7	8890											
PCGF3	10336	mdanderson.org	37	chr4	727493	727493	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaccaggaagatcaagctGtgggacatcaacgcccacat	10	11	2	2	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_006315	exon4	c.G24T	p.L8L	CAAGCTGTGGGAC		39	3	0.08	40	0	0				62	0	0				T	727493	G	T	727493	2	4	122	1	0	0	0	0	0	0	0	1	11622	1364	48	3		3	PCGF3	4	727493	Silent	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10		727493	190426783	8	8891											
FGFRL1	53834	mdanderson.org	37	chr4	1016154	1016154	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agccgcttccgcgtgctgccGcaggggctgaaggtgaagca	16	12	0	2	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001004356	exon3	c.G243A	p.P81P	GCTGCCGCAGGGG		34	3	0.09	39	0	0				20	0	0				A	1016154	G	A	1016154	2	1	122	1	0	0	0	0	0	0	0	1	5901	1074	38	1		1	FGFRL1	4	1016154	Silent	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	288661	1016154	190138122	9	8892											
CLCN3	0	broad.mit.edu	37	chr4	170618538	170618538	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggagggctttggggagccTttttcattagggcaaatatt	13	5	1	0	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	CLCN3	NM_001829	exon9	c.T1216C	p.F406L	GGAGCCTTTTTCA		170	4	0.02	203	2	0.0098522167		85		9	0	0				C	170618538	T	C	170618538	3	2	122	1	0	0	0	0	1	0	0	0	3487	1609	56	4	1246	4	CLCN3	4	170618538	Missense_Mutation	SNP	T	TCGA-XE-AAOD-01A-11D-A435-10	169602384	170618538	20535738	10	8893											
CTNND2	1501	mdanderson.org	37	chr5	11385032	11385032	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggtgctgtaggacttggCcaggcggctgggcgactgct	18	10	0	0	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001332	exon7	c.G922A	p.A308T	ACTTGGCCAGGCG		27	3	0.11	15	0	0				0	0					T	11385032	C	T	11385032	3	4	122	1	0	0	0	0	1	0	0	0	4044	739	26	2	2819	2	CTNND2	5	11385032	Missense_Mutation	SNP	C	TCGA-XE-AAOD-01A-11D-A435-10		11385032	169530228	11	8894											
FEM1C	56929	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr5	114860823	114860823	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagagtctgcatagacagCgcctctatatctaatatagt	7	10	3	2	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	FEM1C,NS,carcinoma,0,1	FEM1C	NM_020177	exon3	c.G1036A	p.A346T	AGACAGCGCCTCT		54	4	0.07	72	0	0		0	1	8	0	0				T	114860823	C	T	114860823	3	4	122	1	0	0	0	0	1	0	0	0	5843	768	27	1	821	1	FEM1C	5	114860823	Missense_Mutation	SNP	C	TCGA-XE-AAOD-01A-11D-A435-10	103475791	114860823	66054437	12	8895											
EBF1	1879	mdanderson.org	37	chr5	158135162	158135162	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcttgtggaggaggccatGgtggggctggatggcactac	19	7	0	0	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_024007	exon15	c.C1569A	p.T523T	GGCCATGGTGGGG		48	3	0.06	66	0	0				3	0	0				T	158135162	G	T	158135162	2	4	122	1	0	0	0	0	0	0	0	1	4906	1335	47	3		3	EBF1	5	158135162	Silent	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	43274339	158135162	22780098	13	8896											
TXNDC5	81567	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	7883446	7883446	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtctctgcctccactgtgCtcactgactttcttccctcc	6	17	3	1	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_030810	exon10	c.G1230A	p.E410E	ACTGTGCTCACTG		98	5	0.05	81	0	0				639	14	0.02				T	7883446	C	T	7883446	2	4	122	1	0	0	0	0	0	0	0	1	16860	796	28	2		2	TXNDC5	6	7883446	Silent	SNP	C	TCGA-XE-AAOD-01A-11D-A435-10		7883446	163231621	14	8897											
ID4	3400	mdanderson.org	37	chr6	19838202	19838202	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgatatgaacgactgctatAgccgcctgcggaggctggtg	15	10	0	1	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001546	exon1	c.A217G	p.S73G	TGCTATAGCCGCC		61	3	0.05	67	0	0				33	0	0				G	19838202	A	G	19838202	3	3	122	1	0	0	0	0	1	0	0	0	7535	420	15	4	219	4	ID4	6	19838202	Missense_Mutation	SNP	A	TCGA-XE-AAOD-01A-11D-A435-10	11954756	19838202	151276865	15	8898											
MDN1	23195	mdanderson.org	37	chr6	90529232	90529232	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcacgtcttacctgcttgGccaagaacctgcccaactca	6	16	3	1	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_014611	exon1	c.C95A	p.A32D	TGCTTGGCCAAGA		56	3	0.05	73	0	0				1	0	0				T	90529232	G	T	90529232	3	4	122	1	0	0	0	0	1	0	0	0	9464	1203	42	2	17103	2	MDN1	6	90529232	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	70691030	90529232	80585835	16	8899											
SYNE1	23345	broad.mit.edu;mdanderson.org	37	chr6	152469314	152469314	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtgatcccactccagggggAtggagtccacactagccggg	14	13	0	1	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	SYNE1	NM_182961	exon137	c.T24842C	p.I8281T	AGGGGGATGGAGT		85	4	0.05	94	0	0		3227		23	0	0				G	152469314	A	G	152469314	3	3	122	1	0	0	0	0	1	0	0	0	15501	333	12	4	1664	4	SYNE1	6	152469314	Missense_Mutation	SNP	A	TCGA-XE-AAOD-01A-11D-A435-10	61940082	152469314	18645753	17	8900											
SLC22A1	6580	mdanderson.org	37	chr6	160564645	160564645	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cattgcaatacaaatgatctGcctggtgaatgctgagctgt	10	8	1	3	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_153187	exon8	c.G1349T	p.C450F	TGATCTGCCTGGT		45	3	0.07	75	0	0				2	0	0				T	160564645	G	T	160564645	3	4	122	1	0	0	0	0	1	0	0	0	14494	1319	46	2	1379	2	SLC22A1	6	160564645	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	8095331	160564645	10550422	18	8901											
ZNF425	155054	broad.mit.edu;mdanderson.org	37	chr7	148801463	148801463	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggtctttttgcactcgccGcagggaaactccttctgcct	9	13	2	0	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	ZNF425	NM_001001661	exon4	c.C1500A	p.C500X	CTCGCCGCAGGGA		34	3	0.09	47	0	0		99		1	0	0				T	148801463	G	T	148801463	4	4	122	1	0	0	0	0	0	1	0	0	17955	1079	38	1	762	1	ZNF425	7	148801463	Nonsense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10		148801463	10337200	19	8902											
AZIN1	51582	ucsc.edu	37	chr8	103841637	103841637	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agctcaggaagaagacagctTtccacaatttgatcaagctc	8	10	2	3	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	AZIN1	NM_015878	exon12	c.A1098G	p.E366E	ACAGCTTTCCACA		135	1	0.01	165	0	0		26		407	63	0.15				C	103841637	T	C	103841637	2	2	122	1	0	0	0	0	0	0	0	1	1240	1838	64	4		4	AZIN1	8	103841637	Silent	SNP	T	TCGA-XE-AAOD-01A-11D-A435-10		103841637	42522385	20	8903											
PSCA	8000	mdanderson.org	37	chr8	143763491	143763491	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgccctgcagccggctgctGccatccttgcgctgctccct	10	18	0	0	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_005672	exon3	c.G286A	p.A96T	GCTGCTGCCATCC		22	3	0.14	32	0	0				0	0					A	143763491	G	A	143763491	3	1	122	1	0	0	0	0	1	0	0	0	12693	1319	46	2	296	2	PSCA	8	143763491	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	39921854	143763491	2600531	21	8904											
PLEC	5339	mdanderson.org	37	chr8	145007483	145007483	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgttccacctcccccgcccGctgtggcactttgcctgcag	9	20	0	0	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_201380	exon13	c.C1711T	p.R571W	CCGCCCGCTGTGG		35	3	0.09	42	0	0				27	0	0				A	145007483	G	A	145007483	3	1	122	1	0	0	0	0	1	0	0	0	12099	1086	38	1	12423	1	PLEC	8	145007483	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	1243992	145007483	1356539	22	8905											
NOTCH1	4851	mdanderson.org	37	chr9	139407986	139407986	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagggtcacagtcgcacttGtacctgcaagggggaccaca	12	13	1	0	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_017617	exon14	c.C2211A	p.Y737X	GCACTTGTACCTG		38	3	0.08	51	0	0				15	0	0				T	139407986	G	T	139407986	4	4	122	1	0	0	0	0	0	1	0	0	10593	1372	48	3	5540	3	NOTCH1	9	139407986	Nonsense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10		139407986	1805445	23	8906											
ABCA2	20	mdanderson.org	37	chr9	139907513	139907513	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggtcctcatccggggacGctggcgagtcagatggggcg	18	11	2	1	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_212533	exon30	c.C4898T	p.A1633V	GGGGACGCTGGCG		20	2	0.1	23	0	0				8	0	0				A	139907513	G	A	139907513	3	1	122	1	0	0	0	0	1	0	0	0	32	1087	38	1	2582	1	ABCA2	9	139907513	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	499527	139907513	1305918	24	8907											
PFKP	5214	bcgsc.ca	37	chr10	3161041	3161041	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcacagcatcaacgcgctgCtgatcatcggtggattcgag	12	12	2	1	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	PFKP	NM_002627	exon15	c.C1510T	p.L504L	GCGCTGCTGATCA		73	5	0.07	84	0	0		182		194	0	0				T	3161041	C	T	3161041	2	4	122	1	0	0	0	0	0	0	0	1	11813	796	28	2		2	PFKP	10	3161041	Silent	SNP	C	TCGA-XE-AAOD-01A-11D-A435-10		3161041	132373706	25	8908											
MUC6	4588	bcgsc.ca	37	chr11	1016822	1016822	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgatggggttggataggtAgtggtggtctggaaggatgt	20	1	1	1	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	MUC6	NM_005961	exon31	c.T5979G	p.T1993T	ATAGGTAGTGGTG		375	16	0.04	523	13	0.0248565966		408		0	0					C	1016822	A	C	1016822	2	2	122	1	0	0	0	0	0	0	0	1	10027	407	15	4		4	MUC6	11	1016822	Silent	SNP	A	TCGA-XE-AAOD-01A-11D-A435-10		1016822	133989694	26	8909											
OR56B1	387748	mdanderson.org	37	chr11	5758268	5758268	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcctgtgcttgcagcacaGcgtgattattgctccaagaa	11	10	0	2	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001005180	exon1	c.G522T	p.Q174H	AGCACAGCGTGAT		49	3	0.06	80	0	0				0	0					T	5758268	G	T	5758268	3	4	122	1	0	0	0	0	1	0	0	0	11183	962	34	2	524	2	OR56B1	11	5758268	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	4741446	5758268	129248248	27	8910											
PAX6	5080	broad.mit.edu	37	chr11	31816308	31816308	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgatggagttggtattctcTccccctccttcctgttgctg	9	13	1	1	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	PAX6	NM_001604	exon9	c.A594G	p.G198G	ATTCTCTCCCCCT		102	5	0.05	133	1	0.007518797		75		0	0					C	31816308	T	C	31816308	2	2	122	1	0	0	0	0	0	0	0	1	11529	1538	54	4		4	PAX6	11	31816308	Silent	SNP	T	TCGA-XE-AAOD-01A-11D-A435-10	26058040	31816308	103190208	28	8911											
APLNR	187	mdanderson.org	37	chr11	57004401	57004401	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagggatgagggcccccgaGgatttccagtctgtgtactc	14	11	1	1	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_005161	exon1	c.C78A	p.S26S	CCCCGAGGATTTC		48	3	0.06	81	0	0				22	0	0				T	57004401	G	T	57004401	2	4	122	1	0	0	0	0	0	0	0	1	774	987	35	3		3	APLNR	11	57004401	Silent	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	25188093	57004401	78002115	29	8912											
SF1	7536	bcgsc.ca	37	chr11	64533334	64533334	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gggagctggaggcatcccgaAgggcggcatgcccgccaccc	16	15	0	0	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	SF1	NM_004630	exon13	c.T1876A	p.F626I	TCCCGAAGGGCGG		34	4	0.12	74	0	0		124		201	0	0				T	64533334	A	T	64533334	3	4	122	1	0	0	0	0	1	0	0	0	14198	72	3	5	181	5	SF1	11	64533334	Missense_Mutation	SNP	A	TCGA-XE-AAOD-01A-11D-A435-10	7528933	64533334	70473182	30	8913											
INTS4	92105	broad.mit.edu	37	chr11	77635932	77635932	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agcctctcgaatatctctggAtgaatccttttaaaaaaaaa	5	8	2	1	rs148749715		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	INTS4	NM_033547	exon12	c.T1378G	p.S460A	CTCTGGATGAATC		232	5	0.02	249	0	0		89		32	0	0				C	77635932	A	C	77635932	3	2	122	1	0	0	0	0	1	0	0	0	7823	333	12	4	1561	4	INTS4	11	77635932	Missense_Mutation	SNP	A	TCGA-XE-AAOD-01A-11D-A435-10	13102598	77635932	57370584	31	8914											
ANGPTL5	253935	mdanderson.org	37	chr11	101775579	101775579	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtctgtgaggaaaaggatcCagctgttttctaaaaacttc	10	7	2	1	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_178127	exon5	c.G405A	p.L135L	AGGATCCAGCTGT		30	3	0.1	24	0	0				0	0					T	101775579	C	T	101775579	2	4	122	1	0	0	0	0	0	0	0	1	613	581	21	3		3	ANGPTL5	11	101775579	Silent	SNP	C	TCGA-XE-AAOD-01A-11D-A435-10	24139647	101775579	33230937	32	8915											
TIRAP	114609	mdanderson.org	37	chr11	126162383	126162383	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccccacagactggttcaggCagaccctgctgaagaagccc	10	16	1	4	rs202146623	bycluster	TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_148910	exon5	c.C79T	p.Q27X	TTCAGGCAGACCC		42	3	0.07	60	0	0	0.001			3	0	0				T	126162383	C	T	126162383	4	4	122	1	0	0	0	0	0	1	0	0	15986	711	25	2	85	2	TIRAP	11	126162383	Nonsense_Mutation	SNP	C	TCGA-XE-AAOD-01A-11D-A435-10	24386804	126162383	8844133	33	8916											
GLB1L2	89944	mdanderson.org	37	chr11	134226237	134226237	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgccgtgcaggtggagaatGaatatggttcctataataaa	11	5	0	2	rs146193618	alternate_allele	TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_138342	exon6	c.G601T	p.E201X	GAGAATGAATATG		33	3	0.09	46	0	0				1	0	0				T	134226237	G	T	134226237	4	4	122	1	0	0	0	0	0	1	0	0	6470	1291	45	3	623	3	GLB1L2	11	134226237	Nonsense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	8063854	134226237	780279	34	8917											
PCBP2	5094	broad.mit.edu;ucsc.edu	37	chr12	53865577	53865577	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agcattagcctggctcaataTctaatcaatgtcaggtaaga	8	8	4	1	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	PCBP2	NM_005016	exon14	c.T1050G	p.Y350X	TCAATATCTAATC		114	4	0.04	148	0	0		38		2328	444	0.19	rescued with RNA-seq			G	53865577	T	G	53865577	4	3	122	1	0	0	0	0	0	1	0	0	11547	1442	50	4	1100	4	PCBP2	12	53865577	Nonsense_Mutation	SNP	T	TCGA-XE-AAOD-01A-11D-A435-10		53865577	79986318	35	8918											
DNAH10	196385	mdanderson.org	37	chr12	124256228	124256228	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aaatggacaaagagatttcaGaaaaactcccttccaaagta	6	8	1	2	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_207437	exon3	c.G196T	p.E66X	ATTTCAGAAAAAC		42	3	0.07	63	0	0				0	0					T	124256228	G	T	124256228	4	4	122	1	0	0	0	0	0	1	0	0	4626	943	33	3	206	3	DNAH10	12	124256228	Nonsense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	70390651	124256228	9595667	36	8919											
EP400	57634	hgsc.bcm.edu;mdanderson.org	37	chr12	132547147	132547147	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcaacagcagcaGcagcaacagacgacgacgac	11	14	0	1	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_015409	exon47	c.G8235A	p.Q2745Q	GCAGCAGCAGCAA		149	10	0.07	150	0	0				53	0	0				A	132547147	G	A	132547147	2	1	122	1	0	0	0	0	0	0	0	1	5177	962	34	2		2	EP400	12	132547147	Silent	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	8290919	132547147	1304748	37	8920											
ABHD4	0	bcgsc.ca	37	chr14	23067200	23067200	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgggctcgccaggacctgGcaaggcttgtttactatggc	15	11	0	0	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	ABHD4	.	.	.	.	GACCTGGCAAGGC		60	4	0.07	37	0	0		30		6	0	0				T	23067200	G	T	23067200	3	4	122	1	0	0	0	0	1	0	0	0	84	1218	42	2		2	ABHD4	14	23067200	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10		23067200	84282340	38	8921											
TMEM30B	161291	mdanderson.org	37	chr14	61747673	61747673	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgggtcgcctgtatagtcgtActccagctccttgatgccgt	11	13	0	1	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001017970	exon1	c.T193C	p.Y65H	AGTCGTACTCCAG		13	2	0.15	10	0	0				0	0					G	61747673	A	G	61747673	3	3	122	1	0	0	0	0	1	0	0	0	16213	391	14	4	866	4	TMEM30B	14	61747673	Missense_Mutation	SNP	A	TCGA-XE-AAOD-01A-11D-A435-10	38680473	61747673	45601867	39	8922											
DPP8	54878	mdanderson.org	37	chr15	65744370	65744370	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcattctggtcagggtgaCccatataacgttccgtgtat	10	9	3	1	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_197960	exon19	c.G2390A	p.G797D	GGGTGACCCATAT		47	3	0.06	71	0	0				34	0	0				T	65744370	C	T	65744370	3	4	122	1	0	0	0	0	1	0	0	0	4758	507	18	3	318	3	DPP8	15	65744370	Missense_Mutation	SNP	C	TCGA-XE-AAOD-01A-11D-A435-10		65744370	36787022	40	8923											
CD276	80381	mdanderson.org	37	chr15	74000783	74000783	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gctttcgtgtgctggagaaaGatcaaacagagctgtgagga	14	6	1	4	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001024736	exon7	c.G1473T	p.K491N	GAGAAAGATCAAA		42	3	0.07	81	0	0				138	0	0				T	74000783	G	T	74000783	3	4	122	1	0	0	0	0	1	0	0	0	3014	933	33	3	1495	3	CD276	15	74000783	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	8256413	74000783	28530609	41	8924											
ABCA3	21	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	2358479	2358479	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaatttcccaatgagctgGgctcccattgccatggcgac	9	13	1	1	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001089	exon11	c.C1257T	p.A419A	GAGCTGGGCTCCC		61	13	0.21	65	0	0				2	0	0				A	2358479	G	A	2358479	2	1	122	1	0	0	0	0	0	0	0	1	33	1219	43	3		3	ABCA3	16	2358479	Silent	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10		2358479	87996274	42	8925											
ZNF785	146540	mdanderson.org	37	chr16	30594392	30594392	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggaacccctctggcggaagCggcgcccgcagtcggggcag	18	14	1	0	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_152458	exon3	c.G707A	p.R236H	CGGAAGCGGCGCC		42	3	0.07	44	0	0				7	0	0				T	30594392	C	T	30594392	3	4	122	1	0	0	0	0	1	0	0	0	18205	768	27	1	514	1	ZNF785	16	30594392	Missense_Mutation	SNP	C	TCGA-XE-AAOD-01A-11D-A435-10	28235913	30594392	59760361	43	8926											
ZNF668	79759	mdanderson.org	37	chr16	31073545	31073545	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcacgtgagcgaggatgagCgggagaagctcttcccgcac	16	11	1	3	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001172669	exon4	c.G773A	p.R258H	GATGAGCGGGAGA		52	3	0.06	37	0	0				51	0	0				T	31073545	C	T	31073545	3	4	122	1	0	0	0	0	1	0	0	0	18131	768	27	1	1159	1	ZNF668	16	31073545	Missense_Mutation	SNP	C	TCGA-XE-AAOD-01A-11D-A435-10	479153	31073545	59281208	44	8927											
HSF4	3299	mdanderson.org	37	chr16	67198821	67198821	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacccaggcacagaccaccTgatccgctggagcccggtga	13	15	0	3	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001538	exon3	c.T107C	p.L36P	ACCACCTGATCCG		33	3	0.09	26	0	0				2	0	0				C	67198821	T	C	67198821	3	2	122	1	0	0	0	0	1	0	0	0	7438	1580	55	4	109	4	HSF4	16	67198821	Missense_Mutation	SNP	T	TCGA-XE-AAOD-01A-11D-A435-10	36125276	67198821	23155932	45	8928											
FAM65A	79567	mdanderson.org	37	chr16	67578273	67578273	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccgccccctcagcacggGgtgtccagctctggatgctg	13	16	2	0	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001193523	exon15	c.G2732T	p.G911V	GCACGGGGTGTCC		28	3	0.11	40	0	0				43	0	0				T	67578273	G	T	67578273	3	4	122	1	0	0	0	0	1	0	0	0	5633	1232	43	3	2726	3	FAM65A	16	67578273	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	379452	67578273	22776480	46	8929											
ANKRD11	29123	mdanderson.org	37	chr16	89346815	89346815	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgaggtggagatggcggcGgggacggcgtccactccgtc	18	11	1	2	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001256182	exon10	c.C6135A	p.P2045P	GGCGGCGGGGACG		21	2	0.1	29	0	0				55	1	0.02				T	89346815	G	T	89346815	2	4	122	1	0	0	0	0	0	0	0	1	635	1103	39	1		1	ANKRD11	16	89346815	Silent	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	21768542	89346815	1007938	47	8930											
SPNS2	124976	mdanderson.org	37	chr17	4439658	4439658	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctttcgtcgtggtcctggGcggcatgttcttcctcgcca	11	15	1	0	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001124758	exon11	c.G1544T	p.G515V	TCCTGGGCGGCAT		35	3	0.09	42	0	0				23	0	0				T	4439658	G	T	4439658	3	4	122	1	0	0	0	0	1	0	0	0	15130	1203	42	2	1586	2	SPNS2	17	4439658	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10		4439658	76755552	48	8931											
RARA	0	broad.mit.edu	37	chr17	38512394	38512394	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtggggggcgggacgggggTggcctggcccccccgccagg	23	13	0	0	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	RARA	NM_000964	exon9	c.T1305G	p.G435G	CGGGGGTGGCCTG		87	11	0.13	86	0	0		52		21	0	0				G	38512394	T	G	38512394	2	3	122	1	0	0	0	0	0	0	0	1	13103	1683	59	4		4	RARA	17	38512394	Silent	SNP	T	TCGA-XE-AAOD-01A-11D-A435-10	34072736	38512394	42682816	49	8932											
ITGA3	3675	mdanderson.org	37	chr17	48157689	48157689	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatccctgatgcccccgttGtcaccaacgtgactgtgaag	9	15	1	3	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_005501	exon22	c.G2770T	p.V924F	CCCGTTGTCACCA		31	3	0.1	39	0	0				30	0	0				T	48157689	G	T	48157689	3	4	122	1	0	0	0	0	1	0	0	0	7920	1377	48	3	2856	3	ITGA3	17	48157689	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	9645295	48157689	33037521	50	8933											
C17orf80	55028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	71232215	71232215	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actctacctaatgatgtacaAactacctctggtgatctcaa	5	11	3	2	rs372656983	bycluster	TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001100621	exon3	c.A594G	p.Q198Q	TGTACAAACTACC		219	33	0.15	164	0	0				77	27	0.35				G	71232215	A	G	71232215	2	3	122	1	0	0	0	0	0	0	0	1	1895	11	1	4		4	C17orf80	17	71232215	Silent	SNP	A	TCGA-XE-AAOD-01A-11D-A435-10	23074526	71232215	9962995	51	8934											
SRP68	6730	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	74046599	74046599	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcgctccttagtttcttcGctttcagcctaaacaagggc	9	12	2	0	rs148814451	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	SRP68,NS,carcinoma,-1,1	SRP68	NM_014230	exon9	c.C987A	p.S329R	TTCTTCGCTTTCA		63	5	0.08	78	0	0		-1	1	168	0	0				T	74046599	G	T	74046599	3	4	122	1	0	0	0	0	1	0	0	0	15211	1078	38	1	928	1	SRP68	17	74046599	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	2814384	74046599	7148611	52	8935											
TNRC6C	57690	broad.mit.edu;mdanderson.org	37	chr17	76047438	76047438	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aataccaccaccaccaccacCactaccacgagcaacaccac	2	21	0	0	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	TNRC6C	NM_018996	exon4	c.C2295T	p.T765T	CACCACCACTACC		47	3	0.06	37	0	0		173		20	0	0				T	76047438	C	T	76047438	2	4	122	1	0	0	0	0	0	0	0	1	16401	581	21	3		3	TNRC6C	17	76047438	Silent	SNP	C	TCGA-XE-AAOD-01A-11D-A435-10	2000839	76047438	5147772	53	8936											
NDC80	10403	mdanderson.org	37	chr18	2608749	2608749	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agtgagcttgagtccttggaGaaacacaagcacctgctaga	11	9	0	4	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_006101	exon15	c.G1608T	p.E536D	CTTGGAGAAACAC		50	3	0.06	56	0	0				109	0	0				T	2608749	G	T	2608749	3	4	122	1	0	0	0	0	1	0	0	0	10288	933	33	3	1662	3	NDC80	18	2608749	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10		2608749	75468499	54	8937											
ZNF24	7572	mdanderson.org	37	chr18	32920572	32920572	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctcttcatctggagttgGgatgataagtattgaatctt	9	6	4	2	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_006965	exon2	c.C43A	p.P15T	GAGTTGGGATGAT		39	3	0.08	44	0	0				22	0	0				T	32920572	G	T	32920572	3	4	122	1	0	0	0	0	1	0	0	0	17849	1232	43	3	1075	3	ZNF24	18	32920572	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	30311823	32920572	45156676	55	8938											
PIGN	23556	mdanderson.org	37	chr18	59781853	59781853	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcttaaaatgttgaactGtttggaatcagaaagcagtc	8	5	2	2	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_176787	exon15	c.C1192A	p.Q398K	TGAACTGTTTGGA		49	3	0.06	51	0	0				20	0	0				T	59781853	G	T	59781853	3	4	122	1	0	0	0	0	1	0	0	0	11940	1386	48	3	1671	3	PIGN	18	59781853	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	26861281	59781853	18295395	56	8939											
NOTCH3	4854	mdanderson.org	37	chr19	15296450	15296450	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacctccctcgccgcatggGctggaagcacactcattgat	10	14	1	1	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_000435	exon13	c.C1992T	p.S664S	GCATGGGCTGGAA		31	3	0.1	33	0	0				26	0	0				A	15296450	G	A	15296450	2	1	122	1	0	0	0	0	0	0	0	1	10596	1194	42	2		2	NOTCH3	19	15296450	Silent	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10		15296450	43832533	57	8940											
SPRED3	399473	mdanderson.org	37	chr19	38885395	38885395	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcaggcttcgggccgaccaCgcccccccagcgccgccgct	11	21	1	0	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001042522	exon4	c.C536T	p.T179M	CGACCACGCCCCC		24	3	0.13	31	0	0				0	0					T	38885395	C	T	38885395	3	4	122	1	0	0	0	0	1	0	0	0	15149	536	19	1	590	1	SPRED3	19	38885395	Missense_Mutation	SNP	C	TCGA-XE-AAOD-01A-11D-A435-10	23588945	38885395	20243588	58	8941											
GRIK5	2901	mdanderson.org	37	chr19	42507589	42507589	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgataaaaatgccaccaatGttctccatgcccaaacctgg	6	13	1	0	rs141544447	alternate_allele	TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_002088	exon18	c.C2409A	p.N803K	ACCAATGTTCTCC		51	3	0.06	79	0	0				2	0	0				T	42507589	G	T	42507589	3	4	122	1	0	0	0	0	1	0	0	0	6817	1368	48	3	541	3	GRIK5	19	42507589	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	3622194	42507589	16621394	59	8942											
LIG1	3978	mdanderson.org	37	chr19	48636349	48636349	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ggccaacattggtttcagggGaatccctgggaaaggaggag	16	7	1	0	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_000234	exon18	c.C1615A	p.P539T	TCAGGGGAATCCC		48	3	0.06	73	0	0				143	0	0				T	48636349	G	T	48636349	3	4	122	1	0	0	0	0	1	0	0	0	8820	1174	41	3	1188	3	LIG1	19	48636349	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	6128760	48636349	10492634	60	8943											
USP29	0	broad.mit.edu	37	chr19	57641367	57641367	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttatttgtaaagcttgtGgtcatgctgttctcaaggta	9	8	2	0	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	USP29,NS,carcinoma,0,1	USP29	NM_020903	exon4	c.G1324T	p.G442C	GCTTGTGGTCATG		87	3	0.03	107	0	0		186	1	1	0	0				T	57641367	G	T	57641367	3	4	122	1	0	0	0	0	1	0	0	0	17118	1348	47	3	1326	3	USP29	19	57641367	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	9005018	57641367	1487616	61	8944											
OGFR	11054	mdanderson.org	37	chr20	61444930	61444930	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctacaagggatgagccaGccaaggcgggggaggcagca	17	10	0	1	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_007346	exon7	c.G1963T	p.A655S	GAGCCAGCCAAGG		43	3	0.07	70	0	0				229	0	0				T	61444930	G	T	61444930	3	4	122	1	0	0	0	0	1	0	0	0	10890	971	34	2	1989	2	OGFR	20	61444930	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10		61444930	1580590	62	8945											
OLIG2	10215	mdanderson.org	37	chr21	34399701	34399701	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgactggtgagcgagatctaCgggggccaccacgctggctt	15	12	1	2	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_005806	exon2	c.C531T	p.Y177Y	GATCTACGGGGGC		39	3	0.08	35	0	0				0	0					T	34399701	C	T	34399701	2	4	122	1	0	0	0	0	0	0	0	1	10908	547	19	1		1	OLIG2	21	34399701	Silent	SNP	C	TCGA-XE-AAOD-01A-11D-A435-10		34399701	13730194	63	8946											
KCNJ6	3763	bcgsc.ca	37	chr21	39087331	39087331	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggtccgatctcggctgatGtgtcttggcaggtcatccct	12	11	3	1	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	KCNJ6	NM_002240	exon3	c.C129A	p.H43Q	GCTGATGTGTCTT		128	6	0.05	196	0	0		58		0	0					T	39087331	G	T	39087331	3	4	122	1	0	0	0	0	1	0	0	0	8098	1368	48	3	1150	3	KCNJ6	21	39087331	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	4687630	39087331	9042564	64	8947											
CXorf38	159013	mdanderson.org	37	chrX	40489933	40489933	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttttgatgtagacagagGctgtctagcttctgcatatc	10	7	2	3	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_144970	exon6	c.C894A	p.S298R	ACAGAGGCTGTCT		48	3	0.06	63	0	0				44	0	0				T	40489933	G	T	40489933	3	4	122	1	0	0	0	0	1	0	0	0	4130	1194	42	2	69	2	CXorf38	23	40489933	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10		40489933	114780627	65	8948											
OGT	8473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	70793562	70793562	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aatggaactagagcggctctAtctacagatgtgggagcatt	12	7	2	2	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_181672	exon22	c.A3059G	p.Y1020C	GGCTCTATCTACA		69	13	0.19	85	0	0				351	100	0.28				G	70793562	A	G	70793562	3	3	122	1	0	0	0	0	1	0	0	0	10894	449	16	4	3145	4	OGT	23	70793562	Missense_Mutation	SNP	A	TCGA-XE-AAOD-01A-11D-A435-10	30303629	70793562	84476998	66	8949											
GPRASP2	114928	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chrX	101971349	101971349	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	caagcccctttggaattcccGaagaggcttctgaaatgctt	9	11	1	2	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_138437	exon4	c.G1552T	p.E518X	ATTCCCGAAGAGG		88	4	0.05	105	0	0				16	0	0				T	101971349	G	T	101971349	4	4	122	1	0	0	0	0	0	1	0	0	6763	1059	37	1	1554	1	GPRASP2	23	101971349	Nonsense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	31177787	101971349	53299211	67	8950											
SLC25A5	292	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	118602491	118602491	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttcaacatgacagatgccGctgtgtccttcgccaaggac	9	13	1	2	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001152	exon1	c.G13A	p.A5T	GATGCCGCTGTGT		168	26	0.15	176	0	0				559	220	0.39				A	118602491	G	A	118602491	3	1	122	1	0	0	0	0	1	0	0	0	14566	1087	38	1	15	1	SLC25A5	23	118602491	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	16631142	118602491	36668069	68	8951											
GLUD2	2747	mdanderson.org	37	chrX	120182071	120182071	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgcagtggttgatgtgcCgtttgggggtgctaaagctg	18	5	0	1	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_012084	exon1	c.C533A	p.P178Q	ATGTGCCGTTTGG		55	3	0.05	46	0	0				89	0	0				A	120182071	C	A	120182071	3	1	122	1	0	0	0	0	1	0	0	0	6518	652	23	1	535	1	GLUD2	23	120182071	Missense_Mutation	SNP	C	TCGA-XE-AAOD-01A-11D-A435-10	1579580	120182071	35088489	69	8952											
THOC2	57187	mdanderson.org	37	chrX	122747911	122747911	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aattttacaaacccttttccGctctttcctgtccttttcat	2	13	2	0	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001081550	exon34	c.C4441A	p.R1481R	TTTTCCGCTCTTT		17	2	0.12	25	0	0				151	0	0				T	122747911	G	T	122747911	2	4	122	1	0	0	0	0	0	0	0	1	15924	1086	38	1		1	THOC2	23	122747911	Silent	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10	2565840	122747911	32522649	70	8953											
XPNPEP2	7512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	128886308	128886308	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taccatgtatgggatctatgAaatgatacccaaggtgggtt	11	6	1	2	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_003399	exon10	c.A1004G	p.E335G	TCTATGAAATGAT		113	21	0.19	112	0	0				0	0					G	128886308	A	G	128886308	3	3	122	1	0	0	0	0	1	0	0	0	17502	246	9	4	1042	4	XPNPEP2	23	128886308	Missense_Mutation	SNP	A	TCGA-XE-AAOD-01A-11D-A435-10	6138397	128886308	26384252	71	8954											
NLGN4Y	22829	mdanderson.org	37	chrY	16953087	16953087	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acacacttttaaaaccttcaGtggaggacaaaacagtacaa	6	9	1	0	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_014893	exon6	c.G2396T	p.S799I	CCTTCAGTGGAGG		46	3	0.07	106	0	0				1	0	0				T	16953087	G	T	16953087	3	4	122	1	0	0	0	0	1	0	0	0	10511	1029	36	3	2568	3	NLGN4Y	24	16953087	Missense_Mutation	SNP	G	TCGA-XE-AAOD-01A-11D-A435-10		16953087	42420479	72	8955											
CROCC	9696	broad.mit.edu;mdanderson.org	37	chr1	17250898	17250898	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcagcaggagctgtcccGcgtggaggacctgctggccc	16	14	0	0	rs146983726	bycluster;byfrequency;alternate_allele	TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	CROCC,NS,carcinoma,+1,1	CROCC	NM_014675	exon3	c.G275T	p.R92L	TGTCCCGCGTGGA		74	4	0.05	60	0	0		185	1	5	0	0				T	17250898	G	T	17250898	3	4	123	1	0	0	0	0	1	0	0	0	3916	1087	38	1	285	1	CROCC	1	17250898	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10		17250898	231999723	1	8956											
C1QC	714	mdanderson.org	37	chr1	22973860	22973860	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatgggcatccctggagagCcaggtgaggagggcagatac	16	10	0	3	rs139780188		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001114101	exon3	c.C322T	p.P108S	GGAGAGCCAGGTG		40	3	0.08	77	0	0	0			740	0	0				T	22973860	C	T	22973860	3	4	123	1	0	0	0	0	1	0	0	0	1970	739	26	2	328	2	C1QC	1	22973860	Missense_Mutation	SNP	C	TCGA-XE-AAOF-01A-11D-A435-10	5722962	22973860	226276761	2	8957											
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	39818746	39818746	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tctcctggattgggtaacttCagtaggatcatctggtggac	12	8	4	0	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_012090	exon40	c.C5081T	p.S1694L	TAACTTCAGTAGG		84	9	0.11	98	0	0				6	1	0.17				T	39818746	C	T	39818746	3	4	123	1	0	0	0	0	1	0	0	0	9189	838	29	3	11386	3	MACF1	1	39818746	Missense_Mutation	SNP	C	TCGA-XE-AAOF-01A-11D-A435-10	16844886	39818746	209431875	3	8958											
ZMPSTE24	10269	mdanderson.org	37	chr1	40747141	40747141	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agacatccaggaggattctgGcatggaaccccgcaatgagg	13	10	1	2	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_005857	exon7	c.G896T	p.G299V	ATTCTGGCATGGA		119	5	0.04	133	0	0				26	0	0				T	40747141	G	T	40747141	3	4	123	1	0	0	0	0	1	0	0	0	17755	1203	42	2	922	2	ZMPSTE24	1	40747141	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	928395	40747141	208503480	4	8959											
CYP2J2	1573	mdanderson.org	37	chr1	60370571	60370571	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtggtacccagccaaagtgGtatcaactgtcacttccctg	10	12	2	0	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_000775	exon7	c.C1163A	p.T388N	AAAGTGGTATCAA		38	3	0.08	61	0	0				3	0	0				T	60370571	G	T	60370571	3	4	123	1	0	0	0	0	1	0	0	0	4195	1261	44	3	357	3	CYP2J2	1	60370571	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	19623430	60370571	188880050	5	8960											
NRAS	4893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	115256530	115256530	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catggcactgtactcttcttGtccagctgtatccagtatgt	8	11	2	0	rs121913254	bycluster	TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	NRAS,NS,haematopoietic_neoplasm,0,2068	NRAS	NM_002524	exon3	c.C181A	p.Q61K	CTTCTTGTCCAGC		102	17	0.17	85	0	0		0	2068	18	4	0.22				T	115256530	G	T	115256530	3	4	123	1	0	0	0	0	1	0	0	0	10687	1386	48	3	400	3	NRAS	1	115256530	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	54885959	115256530	133994091	6	8961											
TCHH	7062	broad.mit.edu	37	chr1	152082220	152082220	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggcgccttctcttctccGgttcctctctcagcagctgc	8	18	4	0	rs113946258	bycluster;byfrequency;alternate_allele	TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	TCHH	NM_007113	exon3	c.C3473A	p.P1158Q	TTCTCCGGTTCCT		92	3	0.03	80	0	0		275		1	0	0				T	152082220	G	T	152082220	3	4	123	1	0	0	0	0	1	0	0	0	15759	1116	39	1	2362	1	TCHH	1	152082220	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	36825690	152082220	97168401	7	8962											
FLG	2312	mdanderson.org	37	chr1	152276368	152276368	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgaatgtccctcactgtcaCtggcctgactaccactggac	8	15	2	2	rs201216189		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	FLG,NS,carcinoma,0,1	FLG	NM_002016	exon3	c.G10994C	p.S3665T	CTGTCACTGGCCT		119	4	0.03	92	0	0		0	1	7	0	0				G	152276368	C	G	152276368	3	3	123	1	0	0	0	0	1	0	0	0	5954	565	20	5	1195	5	FLG	1	152276368	Missense_Mutation	SNP	C	TCGA-XE-AAOF-01A-11D-A435-10	194148	152276368	96974253	8	8963			1	18		2	2	19	N	G_C	4.1864e-05
FLG	2312	mdanderson.org	37	chr1	152276386	152276386	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cactggcctgactaccactgGaccctcggtgtccactgtct	9	16	1	1	rs199655799	bycluster	TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	FLG,NS,carcinoma,-1,1	FLG	NM_002016	exon3	c.C10976A	p.S3659Y	CCACTGGACCCTC		106	4	0.04	85	0	0		-1	1	11	0	0				T	152276386	G	T	152276386	3	4	123	1	0	0	0	0	1	0	0	0	5954	1174	41	3	1213	3	FLG	1	152276386	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	18	152276386	96974235	9	8964			1	18		2	2	19	N	G_C	4.1864e-05
CR1	1378	mdanderson.org	37	chr1	207782931	207782931	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tctttaccctcactgagatcAtcagatttagatgtcagccc	6	12	5	3	rs6691117	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_000651	exon37	c.A6193T	p.I2065F	GAGATCATCAGAT		112	3	0.03	103	0	0				8	0	0				T	207782931	A	T	207782931	3	4	123	1	0	0	0	0	1	0	0	0	3863	217	8	5	6339	5	CR1	1	207782931	Missense_Mutation	SNP	A	TCGA-XE-AAOF-01A-11D-A435-10	55506545	207782931	41467690	10	8965											
LBR	3930	broad.mit.edu	37	chr1	225592129	225592129	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggagggaccacgccaagGccatgatgagatcacccaag	13	11	1	2	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	LBR	NM_194442	exon13	c.C1664A	p.A555D	GCCAAGGCCATGA		170	6	0.04	136	0	0		54		59	0	0				T	225592129	G	T	225592129	3	4	123	1	0	0	0	0	1	0	0	0	8690	1203	42	2	191	2	LBR	1	225592129	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	17809198	225592129	23658492	11	8966											
STRN	6801	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	37094974	37094974	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tacttatgggctctgaatgtAtagataggttctacatcaag	9	6	3	2	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	STRN,extremity,malignant_melanoma,0,1	STRN	NM_003162	exon12	c.T1530C	p.Y510Y	GAATGTATAGATA		23	4	0.17	28	0	0		0	1	5	0	0				G	37094974	A	G	37094974	2	3	123	1	0	0	0	0	0	0	0	1	15384	456	16	4		4	STRN	2	37094974	Silent	SNP	A	TCGA-XE-AAOF-01A-11D-A435-10		37094974	206104399	12	8967											
MTA3	57504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	42836672	42836672	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaacatcagttgaaacatAgggaactctttttgtcacgc	8	8	3	2	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_020744	exon4	c.A265G	p.R89G	AAACATAGGGAAC		128	13	0.1	156	0	0				69	23	0.33				G	42836672	A	G	42836672	3	3	123	1	0	0	0	0	1	0	0	0	9957	411	15	4	279	4	MTA3	2	42836672	Missense_Mutation	SNP	A	TCGA-XE-AAOF-01A-11D-A435-10	5741698	42836672	200362701	13	8968											
USP34	9736	mdanderson.org	37	chr2	61575520	61575520	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctagaattaacctcattGctagatccatcactatgccc	6	12	2	2	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_014709	exon15	c.C1770A	p.S590R	CTCATTGCTAGAT		67	4	0.06	38	0	0				5	0	0				T	61575520	G	T	61575520	3	4	123	1	0	0	0	0	1	0	0	0	17124	1310	46	2	9134	2	USP34	2	61575520	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	18738848	61575520	181623853	14	8969											
SFXN5	94097	hgsc.bcm.edu;mdanderson.org	37	chr2	73215427	73215427	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aacctctggatgagaaggcgGgtggctggggtgaacttgtt	17	6	1	2	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_144579	exon10	c.C585A	p.T195T	AAGGCGGGTGGCT		83	4	0.05	88	0	0				5	0	0				T	73215427	G	T	73215427	2	4	123	1	0	0	0	0	0	0	0	1	14251	1219	43	3		3	SFXN5	2	73215427	Silent	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	11639907	73215427	169983946	15	8970											
ATF2	1386	broad.mit.edu	37	chr2	175979466	175979466	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtgattacagtacttgagGttggtgaaggtactgcctgc	15	6	0	3	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	ATF2	NM_001880	exon8	c.C578A	p.T193N	CTTGAGGTTGGTG		160	4	0.03	90	0	0		52		25	0	0				T	175979466	G	T	175979466	3	4	123	1	0	0	0	0	1	0	0	0	1079	1261	44	3	967	3	ATF2	2	175979466	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	102764039	175979466	67219907	16	8971											
FZD5	7855	mdanderson.org	37	chr2	208632213	208632213	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	acgaagcccgccagcaggaaGagcgtgcccaccagcaggta	13	14	0	1	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_003468	exon2	c.C1251A	p.L417L	CAGGAAGAGCGTG		30	3	0.1	36	0	0				6	0	0				T	208632213	G	T	208632213	2	4	123	1	0	0	0	0	0	0	0	1	6167	929	33	3		3	FZD5	2	208632213	Silent	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	32652747	208632213	34567160	17	8972											
ACADL	33	mdanderson.org	37	chr2	211068162	211068162	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccacatcagcaattaacaGcctttcctataacacaaaaa	3	12	1	0	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001608	exon8	c.C877A	p.L293M	TTAACAGCCTTTC		45	3	0.07	54	0	0				0	0					T	211068162	G	T	211068162	3	4	123	1	0	0	0	0	1	0	0	0	112	962	34	2	431	2	ACADL	2	211068162	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	2435949	211068162	32131211	18	8973											
GIGYF2	26058	mdanderson.org	37	chr2	233677194	233677194	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcagccaacagcttcacaGcctacaggtaaaaacttaga	6	12	2	1	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001103147	exon20	c.G2163T	p.Q721H	TTCACAGCCTACA		47	3	0.06	43	0	0				39	0	0				T	233677194	G	T	233677194	3	4	123	1	0	0	0	0	1	0	0	0	6419	962	34	2	2232	2	GIGYF2	2	233677194	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	22609032	233677194	9522179	19	8974											
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	52537884	52537884	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttctcctgcgaccggtctGccacttgccaggtgaccgct	10	17	2	1	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_015136	exon9	c.G988T	p.A330S	CGGTCTGCCACTT		76	5	0.07	95	0	0				0	0					T	52537884	G	T	52537884	3	4	123	1	0	0	0	0	1	0	0	0	15292	1319	46	2	1022	2	STAB1	3	52537884	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10		52537884	145484546	20	8975											
KCNAB1	7881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	156232196	156232196	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgataaaccaaggcatggcGatgtactggggcacctcgag	14	9	0	1	rs370190413		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	KCNAB1_ENST00000471742,colon,carcinoma,+1,2	KCNAB1_ENST00000471742	NM_172160	exon9	c.G702A	p.A234A	CATGGCGATGTAC		80	11	0.14	83	0	0		1	2	0	0					A	156232196	G	A	156232196	2	1	123	1	0	0	0	0	0	0	0	1	8052	1045	37	1		1	KCNAB1	3	156232196	Silent	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	103694312	156232196	41790234	21	8976											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	55599320	55599320	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgattttggtctagccagaGacatcaagaatgattctaat	9	6	3	4	rs121913506	bycluster	TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	KIT,colon,carcinoma,0,932	KIT	NM_000222	exon17	c.G2446C	p.D816H	GCCAGAGACATCA		60	26	0.43	61	0	0		0	932	68	49	0.72				C	55599320	G	C	55599320	3	2	123	1	0	0	0	0	1	0	0	0	8371	942	33	5	2512	5	KIT	4	55599320	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10		55599320	135554956	22	8977											
KDM3B	51780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	137729063	137729063	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttctttcacttccggaggTacccaaactcctgttttcct	6	13	2	0	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_016604	exon9	c.2831+2T>C	.	CGGAGGTACCCAA		95	20	0.21	107	0	0				109	109	1				C	137729063	T	C	137729063	5	2	123	1	0	0	0	0	0	0	1	0	8170	1652	57	4	2867	4	KDM3B	5	137729063	Splice_Site	SNP	T	TCGA-XE-AAOF-01A-11D-A435-10		137729063	43186197	23	8978											
PCDHB14	56122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140605294	140605294	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ccagggcatctggtggacgtGagcggcaccgggaccctgtc	16	13	1	1	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_018934	exon1	c.G2217A	p.V739V	GGACGTGAGCGGC		73	18	0.25	100	0	0				1	0	0				A	140605294	G	A	140605294	2	1	123	1	0	0	0	0	0	0	0	1	11585	1277	45	3		3	PCDHB14	5	140605294	Silent	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	2876231	140605294	40309966	24	8979											
TAF7	6879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140699523	140699523	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	catgaccagactgtactgccCttctcacagtagaggcatat	8	12	1	3	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_005642	exon1	c.G89C	p.R30T	ACTGCCCTTCTCA		114	35	0.31	114	0	0				259	154	0.59				G	140699523	C	G	140699523	3	3	123	1	0	0	0	0	1	0	0	0	15588	681	24	5	964	5	TAF7	5	140699523	Missense_Mutation	SNP	C	TCGA-XE-AAOF-01A-11D-A435-10	94229	140699523	40215737	25	8980											
CSNK1A1	1452	mdanderson.org	37	chr5	148929653	148929653	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttaccgtatgtgggggatgCcaaccccaccttgaagaatc	10	12	0	2	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	CSNK1A1_ENST00000515768,colon,carcinoma,+1,2	CSNK1A1_ENST00000515768	NM_001025105	exon2	c.G215A	p.G72D	GGGATGCCAACCC		47	3	0.06	65	0	0		1	2	49	0	0				T	148929653	C	T	148929653	3	4	123	1	0	0	0	0	1	0	0	0	3975	739	26	2	922	2	CSNK1A1	5	148929653	Missense_Mutation	SNP	C	TCGA-XE-AAOF-01A-11D-A435-10	8230130	148929653	31985607	26	8981											
JARID2	3720	mdanderson.org	37	chr6	15496957	15496957	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagaggaatcggccgaagCgggccacggccgggaagagc	19	10	0	2	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	JARID2,NS,carcinoma,-1,1	JARID2	NM_004973	exon7	c.C1501T	p.R501W	CCGAAGCGGGCCA		42	3	0.07	59	0	0		-1	1	29	0	0				T	15496957	C	T	15496957	3	4	123	1	0	0	0	0	1	0	0	0	7988	759	27	1	1527	1	JARID2	6	15496957	Missense_Mutation	SNP	C	TCGA-XE-AAOF-01A-11D-A435-10		15496957	155618110	27	8982											
UBR2	23304	broad.mit.edu	37	chr6	42633186	42633186	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	caaccaaatctgactcagtgGattagaacaatatctcagca	6	10	3	2	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	UBR2	NM_015255	exon33	c.G3738T	p.W1246C	TCAGTGGATTAGA		181	4	0.02	160	0	0		134		14	0	0				T	42633186	G	T	42633186	3	4	123	1	0	0	0	0	1	0	0	0	16962	1183	41	3	4014	3	UBR2	6	42633186	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	27136229	42633186	128481881	28	8983											
UTRN	7402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	145095443	145095443	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctgacctgaataatgtaCgtttttctgcctaccgtaca	7	11	1	2	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	UTRN,NS,carcinoma,0,1	UTRN	NM_007124	exon59	c.C8575T	p.R2859C	AATGTACGTTTTT		147	19	0.13	122	0	0		0	1	23	5	0.22				T	145095443	C	T	145095443	3	4	123	1	0	0	0	0	1	0	0	0	17162	536	19	1	8809	1	UTRN	6	145095443	Missense_Mutation	SNP	C	TCGA-XE-AAOF-01A-11D-A435-10	102462257	145095443	26019624	29	8984											
HDAC9	9734	mdanderson.org	37	chr7	18875602	18875602	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctcccatgggagatgttgAgtaccttgaagcattcaggt	11	9	1	3	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_178425	exon20	c.A2666G	p.E889G	ATGTTGAGTACCT		48	3	0.06	58	0	0				0	0					G	18875602	A	G	18875602	3	3	123	1	0	0	0	0	1	0	0	0	7054	304	11	4	2857	4	HDAC9	7	18875602	Missense_Mutation	SNP	A	TCGA-XE-AAOF-01A-11D-A435-10		18875602	140263061	30	8985											
SCARA3	51435	ucsc.edu	37	chr8	27509049	27509049	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagggccccgctgcagccGctgccagaagaacctatctt	11	16	1	2	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	SCARA3,colon,carcinoma,0,1	SCARA3	NM_182826	exon3	c.G131T	p.R44L	GCAGCCGCTGCCA		43	4	0.09	27	0	0		93	1	3	0	0				T	27509049	G	T	27509049	3	4	123	1	0	0	0	0	1	0	0	0	13931	1087	38	1	141	1	SCARA3	8	27509049	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10		27509049	118854973	31	8986											
ZFAT	57623	hgsc.bcm.edu;broad.mit.edu	37	chr8	135615099	135615099	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgtggatcctcaggtggGcctgcagcgagtgcttgaac	16	9	1	1	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	ZFAT_ENST00000377838,NS,carcinoma,0,2	ZFAT_ENST00000377838	NM_020863	exon6	c.C863A	p.A288D	AGGTGGGCCTGCA		146	6	0.04	118	1	0.0084745763		0	2	3	0	0				T	135615099	G	T	135615099	3	4	123	1	0	0	0	0	1	0	0	0	17689	1203	42	2	2912	2	ZFAT	8	135615099	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	108106050	135615099	10748923	32	8987											
GNAQ	2776	mdanderson.org	37	chr9	80646047	80646047	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcttgagctcccggcgggcGtcccgcttgtccctgcggag	15	15	0	1	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_002072	exon1	c.C105T	p.D35D	GCGGGCGTCCCGC		44	4	0.09	33	1	0.0303030303				14	0	0				A	80646047	G	A	80646047	2	1	123	1	0	0	0	0	0	0	0	1	6550	1136	40	1		1	GNAQ	9	80646047	Silent	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10		80646047	60567384	33	8988											
MURC	347273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	103340547	103340547	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gactgtgctggacaaagtagCctccatcgtggacagtgtgc	13	10	0	0	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001018116	exon1	c.C122A	p.A41D	AAGTAGCCTCCAT		81	10	0.12	93	0	0				2	0	0				A	103340547	C	A	103340547	3	1	123	1	0	0	0	0	1	0	0	0	10034	739	26	2	124	2	MURC	9	103340547	Missense_Mutation	SNP	C	TCGA-XE-AAOF-01A-11D-A435-10	22694500	103340547	37872884	34	8989											
C9orf96	169436	mdanderson.org	37	chr9	136265624	136265624	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctcgatgtccagctgtgtGcctgctccctgctgctgcac	10	16	0	0	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_153710	exon12	c.G1165T	p.A389S	CTGTGTGCCTGCT		11	2	0.18	18	0	0				0	0					T	136265624	G	T	136265624	3	4	123	1	0	0	0	0	1	0	0	0	2526	1319	46	2	1211	2	C9orf96	9	136265624	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	32925077	136265624	4947807	35	8990											
ADAMTS13	11093	mdanderson.org	37	chr9	136302973	136302973	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtatgccaagtggccccCgggaggacgggaccctgagc	17	12	0	1	rs370215524	alternate_allele	TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_139025	exon13	c.C1540G	p.R514G	GGCCCCCGGGAGG		42	3	0.07	67	0	0				0	0					G	136302973	C	G	136302973	3	3	123	1	0	0	0	0	1	0	0	0	257	643	23	5	1590	5	ADAMTS13	9	136302973	Missense_Mutation	SNP	C	TCGA-XE-AAOF-01A-11D-A435-10	37349	136302973	4910458	36	8991											
WAPAL	23063	mdanderson.org	37	chr10	88206160	88206160	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catctttgatcaactcatctGttttactttctgctagctgg	6	10	5	1	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_015045	exon16	c.C3161A	p.T1054K	TCATCTGTTTTAC		71	4	0.06	69	0	0				42	0	0				T	88206160	G	T	88206160	3	4	123	1	0	0	0	0	1	0	0	0	17307	1377	48	3	427	3	WAPAL	10	88206160	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10		88206160	47328587	37	8992											
MINPP1	9562	mdanderson.org	37	chr10	89265232	89265232	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caccagttccaagcaccgctGcatggatagcagcgccgcct	10	16	0	0	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001178117	exon1	c.G560T	p.C187F	ACCGCTGCATGGA		38	3	0.08	53	0	0				8	0	0				T	89265232	G	T	89265232	3	4	123	1	0	0	0	0	1	0	0	0	9635	1319	46	2	562	2	MINPP1	10	89265232	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	1059072	89265232	46269515	38	8993											
MICALCL	84953	mdanderson.org	37	chr11	12316251	12316251	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggacatcagggacctctttGgcagccccaagaggaaggtg	14	10	2	1	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_032867	exon3	c.G1273T	p.G425C	CTCTTTGGCAGCC		34	3	0.09	51	0	0				0	0					T	12316251	G	T	12316251	3	4	123	1	0	0	0	0	1	0	0	0	9619	1348	47	3	1279	3	MICALCL	11	12316251	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10		12316251	122690265	39	8994											
SLC39A13	91252	mdanderson.org	37	chr11	47436633	47436633	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagacggcagcctgggtcctGcccttcacctctggcggctt	13	15	2	1	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001128225	exon9	c.G963T	p.L321L	GGTCCTGCCCTTC		48	3	0.06	50	0	0				26	0	0				T	47436633	G	T	47436633	2	4	123	1	0	0	0	0	0	0	0	1	14670	1306	46	2		2	SLC39A13	11	47436633	Silent	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	35120382	47436633	87569883	40	8995											
POLR2G	5436	mdanderson.org	37	chr11	62529311	62529311	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcacccgcgctacttcggCcccaacttgctcaacacggt	8	18	1	0	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_002696	exon2	c.C57T	p.G19G	CTTCGGCCCCAAC		34	3	0.09	45	0	0				77	0	0				T	62529311	C	T	62529311	2	4	123	1	0	0	0	0	0	0	0	1	12267	726	26	2		2	POLR2G	11	62529311	Silent	SNP	C	TCGA-XE-AAOF-01A-11D-A435-10	15092678	62529311	72477205	41	8996											
TSGA10IP	254187	broad.mit.edu	37	chr11	65715786	65715787	+	RNA	INS	-	-	CCAC													ccatccatccatccatccatINSccacccatccatccatctat					novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	TSGA10IP	.	.	.	.	CATCCATCCACCC		10	8	0.8	11	0	0		31		0	0					CCAC	65715787	-	CCAC	65715786	6	5	123	0	1	1	1	0	0	0	0	0	16678	1450	50	0		0	TSGA10IP	11	65715786	RNA	INS	-	TCGA-XE-AAOF-01A-11D-A435-10	3186475	65715786	69290730	42	8997											
ARAP1	116985	mdanderson.org	37	chr11	72406494	72406494	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cactgtgcagatgaagtcacCggcatgctgcagggagacag	14	10	1	3	rs375239868		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001040118	exon26	c.G3514A	p.G1172S	AGTCACCGGCATG		52	3	0.06	65	0	0				43	0	0				T	72406494	C	T	72406494	3	4	123	1	0	0	0	0	1	0	0	0	835	652	23	1	878	1	ARAP1	11	72406494	Missense_Mutation	SNP	C	TCGA-XE-AAOF-01A-11D-A435-10	6690708	72406494	62600022	43	8998											
HEPHL1	341208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	93796882	93796882	+	Frame_Shift_Del	DEL	G	G	-													gggcccctgctggtctgcaaGgaaggtaaggagctttgttt					novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	HEPHL1	NM_001098672	exon3	c.623delA	p.K208fs	CTGCAAGGAAGGT		61	15	0.25	75	0	0		144		0	0					-	93796882	G	-	93796882	7	5	123	1	0	1	0	1	0	0	0	0	7095	991	35	0	634	0	HEPHL1	11	93796882	Frame_Shift_Del	DEL	G	TCGA-XE-AAOF-01A-11D-A435-10	21390388	93796882	41209634	44	8999											
ARHGAP20	57569	broad.mit.edu	37	chr11	110451483	110451483	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagaattgcatcacagctGgacttgcgtagctttttctg	10	8	2	1	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	ARHGAP20	NM_020809	exon16	c.C2187A	p.S729S	ACAGCTGGACTTG		89	3	0.03	104	0	0		150		1	0	0				T	110451483	G	T	110451483	2	4	123	1	0	0	0	0	0	0	0	1	867	1335	47	3		3	ARHGAP20	11	110451483	Silent	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	16654601	110451483	24555033	45	9000											
CHD4	1108	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr12	6707254	6707254	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tttcggaacatcacctgacaGtgcagctccagctttgagcg	10	12	1	2	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001273	exon12	c.C1698G	p.H566Q	CTGACAGTGCAGC		95	4	0.04	102	0	0				76	16	0.21				C	6707254	G	C	6707254	3	2	123	1	0	0	0	0	1	0	0	0	3349	1020	36	5	4156	5	CHD4	12	6707254	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10		6707254	127144641	46	9001											
RBP5	0	broad.mit.edu	37	chr12	7281645	7281674	+	RNA	DEL	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	-													gttgcgcctgaccttggcttTtcctgaggaaggaacctgga					novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	RBP5	.	.	.	.	TGGCTTTTCCTGA		11	4	0.36	4	0	0		20		4	0	0				-	7281674	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	-	7281645	6	5	123	0	1	1	0	1	0	0	0	0	13210	1856	64	0		0	RBP5	12	7281645	RNA	DEL	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TCGA-XE-AAOF-01A-11D-A435-10	574391	7281645	126570250	47	9002											
PLXNC1	10154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	94631464	94631464	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctacattaagtccattgagCcacagaaagtatcgacatta	6	9	1	2	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_005761	exon10	c.C2005T	p.P669S	ATTGAGCCACAGA		61	11	0.18	65	0	0				0	0					T	94631464	C	T	94631464	3	4	123	1	0	0	0	0	1	0	0	0	12173	739	26	2	2043	2	PLXNC1	12	94631464	Missense_Mutation	SNP	C	TCGA-XE-AAOF-01A-11D-A435-10	87349819	94631464	39220431	48	9003											
ABCB9	23457	mdanderson.org	37	chr12	123425487	123425487	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gccggtcgatgaactcgaacAccttctcagcagcccccact	8	17	1	1	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001243014	exon8	c.T1436C	p.V479A	TCGAACACCTTCT		58	4	0.07	66	0	0				3	0	0				G	123425487	A	G	123425487	3	3	123	1	0	0	0	0	1	0	0	0	48	159	6	4	884	4	ABCB9	12	123425487	Missense_Mutation	SNP	A	TCGA-XE-AAOF-01A-11D-A435-10	28794023	123425487	10426408	49	9004											
CATSPERB	79820	mdanderson.org	37	chr14	92191427	92191427	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctattagtggaccttaccaaGttttctaagaaaagatacaa	6	7	1	2	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_024764	exon3	c.C165A	p.N55K	TACCAAGTTTTCT		31	3	0.1	35	0	0				0	0					T	92191427	G	T	92191427	3	4	123	1	0	0	0	0	1	0	0	0	2709	1020	36	3	3285	3	CATSPERB	14	92191427	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10		92191427	15158113	50	9005											
BCL11B	64919	hgsc.bcm.edu	37	chr14	99641568	99641568	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctcctcctcCtcgtcctcctcctccggctc	3	25	0	0	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	BCL11B,colon,carcinoma,0,1	BCL11B	NM_138576	exon4	c.G1605C	p.E535D	CTCCTCCTCGTCC		16	2	0.13	10	0	0		0	1	0	0					G	99641568	C	G	99641568	3	3	123	1	0	0	0	0	1	0	0	0	1362	680	24	5	1083	5	BCL11B	14	99641568	Missense_Mutation	SNP	C	TCGA-XE-AAOF-01A-11D-A435-10	7450141	99641568	7707972	51	9006											
BEGAIN	57596	mdanderson.org	37	chr14	101005030	101005030	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggggccgccaccgcggccGtggccttggcaaagcgaggg	19	14	0	0	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_020836	exon7	c.C1058T	p.T353M	GCGGCCGTGGCCT		39	3	0.08	25	0	0				0	0					A	101005030	G	A	101005030	3	1	123	1	0	0	0	0	1	0	0	0	1395	1145	40	1	727	1	BEGAIN	14	101005030	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	1363462	101005030	6344510	52	9007											
THBS1	7057	mdanderson.org	37	chr15	39881513	39881513	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgcttcaccggctcacaGcccttcggccagggtgtcga	11	17	2	0	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_003246	exon12	c.G1884T	p.Q628H	CTCACAGCCCTTC		39	3	0.08	45	0	0				6	0	0				T	39881513	G	T	39881513	3	4	123	1	0	0	0	0	1	0	0	0	15912	962	34	2	1926	2	THBS1	15	39881513	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10		39881513	62649879	53	9008											
LRRC57	255252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	42839488	42839488	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgaggttgagttcgatgaCttgcagctctcccactgagt	12	9	1	4	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_153260	exon4	c.G463A	p.V155I	CGATGACTTGCAG		47	8	0.17	53	0	0				38	11	0.29				T	42839488	C	T	42839488	3	4	123	1	0	0	0	0	1	0	0	0	9057	565	20	3	268	3	LRRC57	15	42839488	Missense_Mutation	SNP	C	TCGA-XE-AAOF-01A-11D-A435-10	2957975	42839488	59691904	54	9009											
DUOX2	50506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	45399065	45399065	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagagcaatgatggtgatgGcaaaaccagggctgctgcct	14	8	0	3	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	DUOX2,colon,carcinoma,-1,1	DUOX2	NM_014080	exon15	c.C1796T	p.A599V	GTGATGGCAAAAC		128	26	0.2	113	0	0		-1	1	0	0					A	45399065	G	A	45399065	3	1	123	1	0	0	0	0	1	0	0	0	4827	1203	42	2	2930	2	DUOX2	15	45399065	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	2559577	45399065	57132327	55	9010											
GOLGA6B	55889	mdanderson.org	37	chr15	72953691	72953691	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaacgcacacgtgacacaGgtgaggctttgcagagggag	15	9	0	4	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	GOLGA6B,NS,carcinoma,+2,1	GOLGA6B	NM_018652	exon8	c.G651T	p.Q217H	GACACAGGTGAGG		43	3	0.07	37	0	0		2	1	2	0	0				T	72953691	G	T	72953691	3	4	123	1	0	0	0	0	1	0	0	0	6599	1014	35	3	681	3	GOLGA6B	15	72953691	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	27554626	72953691	29577701	56	9011											
MAN2A2	4122	hgsc.bcm.edu;mdanderson.org	37	chr15	91455346	91455346	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgggcctggatgggcaccGcacgctgccctcctctgtgc	14	16	1	0	rs146996561		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_006122	exon14	c.G2183A	p.R728H	GGCACCGCACGCT		53	4	0.08	73	0	0	0			11	0	0				A	91455346	G	A	91455346	3	1	123	1	0	0	0	0	1	0	0	0	9264	1087	38	1	2237	1	MAN2A2	15	91455346	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	18501655	91455346	11076046	57	9012											
MKL2	57496	mdanderson.org	37	chr16	14340783	14340783	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgaagacagtctgagtcccAccagcagcactctgtcaaac	8	13	3	3	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_014048	exon12	c.A1666G	p.T556A	AGTCCCACCAGCA		43	3	0.07	46	0	0				4	0	0				G	14340783	A	G	14340783	3	3	123	1	0	0	0	0	1	0	0	0	9649	159	6	4	1704	4	MKL2	16	14340783	Missense_Mutation	SNP	A	TCGA-XE-AAOF-01A-11D-A435-10		14340783	76013970	58	9013											
NUP88	4927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	5308484	5308484	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acagggtaagcagagtacagCacacgcatcataaccatagt	9	10	1	1	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_002532	exon6	c.G937A	p.A313T	GTACAGCACACGC		65	8	0.12	67	0	0				38	9	0.24				T	5308484	C	T	5308484	3	4	123	1	0	0	0	0	1	0	0	0	10818	710	25	2	1336	2	NUP88	17	5308484	Missense_Mutation	SNP	C	TCGA-XE-AAOF-01A-11D-A435-10		5308484	75886726	59	9014											
KRTAP1-1	81851	hgsc.bcm.edu;broad.mit.edu	37	chr17	39197304	39197304	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctgggcggcaccacctgaTacgggtgctcacagctccac	12	15	2	1	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	KRTAP1-1,NS,malignant_melanoma,0,1	KRTAP1-1	NM_030967	exon1	c.A346G	p.I116V	ACCTGATACGGGT		73	3	0.04	79	1	0.0126582278		0	1	0	0					C	39197304	T	C	39197304	3	2	123	1	0	0	0	0	1	0	0	0	8544	1406	49	4	191	4	KRTAP1-1	17	39197304	Missense_Mutation	SNP	T	TCGA-XE-AAOF-01A-11D-A435-10	33888820	39197304	41997906	60	9015											
STAT3	6774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	40500474	40500474	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggaagctgtcactgtagaGctgatggagctgctccaggt	15	8	1	2	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_003150	exon2	c.C61G	p.L21V	TGTAGAGCTGATG		52	7	0.13	63	0	0				17	1	0.06				C	40500474	G	C	40500474	3	2	123	1	0	0	0	0	1	0	0	0	15321	971	34	5	2343	5	STAT3	17	40500474	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	1303170	40500474	40694736	61	9016											
CUEDC1	404093	mdanderson.org	37	chr17	55962728	55962728	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ttggcgcgcagcacgcattcGatgatgtcgtaatccatgtt	11	10	0	1	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001271875	exon2	c.C198A	p.I66I	GCATTCGATGATG		22	2	0.09	25	0	0				0	0					T	55962728	G	T	55962728	2	4	123	1	0	0	0	0	0	0	0	1	4075	1048	37	1		1	CUEDC1	17	55962728	Silent	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	15462254	55962728	25232482	62	9017											
SF3A2	8175	mdanderson.org	37	chr19	2248153	2248153	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtccaccccccagctcctGgagtccaccctccagccccc	8	23	0	0	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_007165	exon9	c.G1003A	p.G335R	GCTCCTGGAGTCC		18	2	0.11	20	0	0				301	0	0				A	2248153	G	A	2248153	3	1	123	1	0	0	0	0	1	0	0	0	14200	1349	47	3	1033	3	SF3A2	19	2248153	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10		2248153	56880830	63	9018											
SLC5A5	6528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	17988612	17988612	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtggctctccatgtatgGcgtgaaccaggcgcaggtgc	16	10	1	1	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_000453	exon6	c.G779C	p.G260A	TGTATGGCGTGAA		100	22	0.22	97	0	0				4	2	0.5				C	17988612	G	C	17988612	3	2	123	1	0	0	0	0	1	0	0	0	14722	1203	42	5	801	5	SLC5A5	19	17988612	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10	15740459	17988612	41140371	64	9019											
CAPNS1	826	broad.mit.edu	37	chr19	36631958	36631958	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aagggcggcggcggcggcggCgggggaggcgggggcctggg	28	9	0	0	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	CAPNS1	NM_001749	exon2	c.C45G	p.G15G	CGGCGGCGGGGGA		73	4	0.05	67	0	0		19		4	0	0				G	36631958	C	G	36631958	2	3	123	1	0	0	0	0	0	0	0	1	2651	755	27	5		5	CAPNS1	19	36631958	Silent	SNP	C	TCGA-XE-AAOF-01A-11D-A435-10	18643346	36631958	22497025	65	9020											
TMX4	56255	mdanderson.org	37	chr20	8000229	8000229	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaggcggccaggagcgccGttagctgcgggccgcagcgc	17	15	0	0	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_021156	exon1	c.C32A	p.T11K	AGCGCCGTTAGCT		22	3	0.14	13	0	0				3	0	0				T	8000229	G	T	8000229	3	4	123	1	0	0	0	0	1	0	0	0	16328	1145	40	1	1049	1	TMX4	20	8000229	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10		8000229	55025291	66	9021											
PIGT	51604	mdanderson.org	37	chr20	44045270	44045270	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggacccgatactgggggCcacccttcctgcaggcccca	13	16	0	0	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001184729	exon2	c.C301T	p.P101S	TGGGGGCCACCCT		49	3	0.06	59	0	0				58	0	0				T	44045270	C	T	44045270	3	4	123	1	0	0	0	0	1	0	0	0	11946	739	26	2	307	2	PIGT	20	44045270	Missense_Mutation	SNP	C	TCGA-XE-AAOF-01A-11D-A435-10	36045041	44045270	18980250	67	9022											
TNFRSF6B	8771	mdanderson.org	37	chr20	62328829	62328829	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctcttcctcccatgacacCctgtgcaccagctgcactgg	9	17	1	1	rs1291205	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	TNFRSF6B,caecum,carcinoma,0,1	TNFRSF6B	NM_003823	exon2	c.C573T	p.T191T	TGACACCCTGTGC		59	3	0.05	59	0	0		0	1	36	0	0				T	62328829	C	T	62328829	2	4	123	1	0	0	0	0	0	0	0	1	16357	610	22	3		3	TNFRSF6B	20	62328829	Silent	SNP	C	TCGA-XE-AAOF-01A-11D-A435-10	18283559	62328829	696691	68	9023											
MCM3AP	8888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	47700450	47700450	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aaagatagccatgtctttatGcaaacttttccccttctttc	4	11	2	1	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_003906	exon3	c.C1483G	p.H495D	CTTTATGCAAACT		441	51	0.12	339	0	0				6	1	0.17				C	47700450	G	C	47700450	3	2	123	1	0	0	0	0	1	0	0	0	9437	1319	46	5	4563	5	MCM3AP	21	47700450	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10		47700450	429445	69	9024											
MIF	4282	mdanderson.org	37	chr22	24237063	24237063	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcggcaagatcggcggcgcGcagaaccgctcctacagcaa	12	14	0	2	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_002415	exon2	c.G213T	p.A71A	CGGCGCGCAGAAC		15	2	0.13	9	0	0				1519	0	0				T	24237063	G	T	24237063	2	4	123	1	0	0	0	0	0	0	0	1	9630	1074	38	1		1	MIF	22	24237063	Silent	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10		24237063	27067503	70	9025											
GDPD2	54857	mdanderson.org	37	chrX	69647059	69647059	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctactgtgtttgagactgatGtgatggtcaggtgagggaag	16	4	1	4	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001171192	exon9	c.G775T	p.V259L	ACTGATGTGATGG		44	3	0.07	35	0	0				46	0	0				T	69647059	G	T	69647059	3	4	123	1	0	0	0	0	1	0	0	0	6365	1377	48	3	805	3	GDPD2	23	69647059	Missense_Mutation	SNP	G	TCGA-XE-AAOF-01A-11D-A435-10		69647059	85623501	71	9026											
COL4A6	1288	broad.mit.edu	37	chrX	107430450	107430450	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggtggaccaggatggccTttttcaccaggaagtccagg	13	11	1	0	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	COL4A6	NM_001847	exon23	c.A1830G	p.K610K	ATGGCCTTTTTCA		86	3	0.03	84	0	0		270		3	0	0				C	107430450	T	C	107430450	2	2	123	1	0	0	0	0	0	0	0	1	3718	1606	56	4		4	COL4A6	23	107430450	Silent	SNP	T	TCGA-XE-AAOF-01A-11D-A435-10	37783391	107430450	47840110	72	9027											
AGRN	375790	mdanderson.org	37	chr1	979025	979025	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcccgtgtgtggctccgacGggcacacgtaccccagcgag	14	15	0	0	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_198576	exon9	c.G1711T	p.G571W	TCCGACGGGCACA		17	2	0.12	23	0	0				27	0	0				T	979025	G	T	979025	3	4	124	1	0	0	0	0	1	0	0	0	394	1116	39	1	1745	1	AGRN	1	979025	Missense_Mutation	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10		979025	248271596	1	9028											
SRRM1	10250	broad.mit.edu	37	chr1	24996016	24996016	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccaaagaaggcagtccccGtctccaagtactaggcccat	8	16	1	1	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	SRRM1	NM_005839	exon14	c.G2142A	p.P714P	GTCCCCGTCTCCA		233	6	0.03	201	0	0		81		104	3	0.03				A	24996016	G	A	24996016	2	1	124	1	0	0	0	0	0	0	0	1	15223	1132	40	1		1	SRRM1	1	24996016	Silent	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10	24016991	24996016	224254605	2	9029											
SCMH1	22955	mdanderson.org	37	chr1	41514364	41514364	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gagccaaagtgtgcttacctGagataacctcaccaccatgg	9	12	1	1	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001172219	exon11	c.C1304A	p.S435X	TTACCTGAGATAA		48	3	0.06	37	0	0				47	0	0				T	41514364	G	T	41514364	4	4	124	1	0	0	0	0	0	1	0	0	13961	1294	45	3	732	3	SCMH1	1	41514364	Nonsense_Mutation	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10	16518348	41514364	207736257	3	9030											
DOCK7	85440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr1	62979205	62979205	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tatgctcccaagaatagcttCttcaagctttgctctcatgt	6	11	3	1	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001271999	exon33	c.G4192T	p.E1398X	TAGCTTCTTCAAG		113	33	0.29	126	0	0				12	4	0.33				A	62979205	C	A	62979205	4	1	124	1	0	0	0	0	0	1	0	0	4719	922	32	3	2302	3	DOCK7	1	62979205	Nonsense_Mutation	SNP	C	TCGA-XE-AAOJ-01A-12D-A435-10	21464841	62979205	186271416	4	9031											
LRRC7	57554	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	70504317	70504317	+	Frame_Shift_Del	DEL	C	C	-													accatgggagtatcatgattCcaatcccaacaggagtctta					novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	LRRC7	NM_020794	exon19	c.2695delT	p.S899fs	ATGATTCCAATCC		147	49	0.33	139	0	0		400		2	0	0				-	70504317	C	-	70504317	7	5	124	1	0	1	0	1	0	0	0	0	9064	855	30	0	2770	0	LRRC7	1	70504317	Frame_Shift_Del	DEL	C	TCGA-XE-AAOJ-01A-12D-A435-10	7525112	70504317	178746304	5	9032											
HAPLN2	60484	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	156595122	156595122	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccggagtgcgcagtttcggCttccccaggccccaacaggc	12	17	0	0	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_021817	exon7	c.C969T	p.G323G	TTTCGGCTTCCCC		111	43	0.39	116	0	0				0	0					T	156595122	C	T	156595122	2	4	124	1	0	0	0	0	0	0	0	1	6995	784	28	2		2	HAPLN2	1	156595122	Silent	SNP	C	TCGA-XE-AAOJ-01A-12D-A435-10	86090805	156595122	92655499	6	9033											
NLRC4	58484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	32476309	32476309	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttcaaaaagtccaccctgGgccctgctgagacggaggaa	12	11	1	1	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001199138	exon4	c.C624A	p.A208A	ACCCTGGGCCCTG		113	35	0.31	92	0	0				1	1	1				T	32476309	G	T	32476309	2	4	124	1	0	0	0	0	0	0	0	1	10515	1219	43	3		3	NLRC4	2	32476309	Silent	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10		32476309	210723064	7	9034											
TRIM43	129868	broad.mit.edu	37	chr2	96261953	96261953	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aattcatatccctacagggcAatgtggttttacgggcacag	10	9	1	0	rs4058025		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	TRIM43	NM_138800	exon4	c.A511G	p.N171D	CAGGGCAATGTGG		283	17	0.06	251	0	0		51		0	0					G	96261953	A	G	96261953	3	3	124	1	0	0	0	0	1	0	0	0	16578	130	5	4	521	4	TRIM43	2	96261953	Missense_Mutation	SNP	A	TCGA-XE-AAOJ-01A-12D-A435-10	63785644	96261953	146937420	8	9035											
HDAC4	9759	mdanderson.org	37	chr2	240111669	240111669	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgcagctgctgctcccGcagggccggctctgccacag	13	17	1	0	rs376138478		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_006037	exon4	c.C199T	p.R67W	GCTCCCGCAGGGC		28	3	0.11	27	0	0				0	0					A	240111669	G	A	240111669	3	1	124	1	0	0	0	0	1	0	0	0	7049	1086	38	1	3151	1	HDAC4	2	240111669	Missense_Mutation	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10	143849716	240111669	3087704	9	9036											
FANCD2	2177	ucsc.edu	37	chr3	10091153	10091153	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctagagttggtagtgttaaaCccatctgctatgatgatgaa	10	6	1	4	rs6785756	bycluster;byfrequency	TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	FANCD2	NM_001018115	exon17	c.C1509T	p.N503N	GTTAAACCCATCT		57	16	0.28	53	12	0.2264150943		253		1	0	0				T	10091153	C	T	10091153	2	4	124	1	0	0	0	0	0	0	0	1	5697	506	18	3		3	FANCD2	3	10091153	Silent	SNP	C	TCGA-XE-AAOJ-01A-12D-A435-10		10091153	187931277	10	9037											
SLC26A6	65010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	48663665	48663665	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gctcaccgaaacagggctgtCggggacaggcctcgggtgtt	16	11	1	0	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_022911	exon20	c.G2251A	p.D751N	GGCTGTCGGGGAC		118	37	0.31	100	0	0				74	23	0.31				T	48663665	C	T	48663665	3	4	124	1	0	0	0	0	1	0	0	0	14575	884	31	1	36	1	SLC26A6	3	48663665	Missense_Mutation	SNP	C	TCGA-XE-AAOJ-01A-12D-A435-10	38572512	48663665	149358765	11	9038											
MFSD7	84179	mdanderson.org	37	chr4	675970	675970	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgcactccggagtcgccGtgctgggccccaggacccca	13	18	0	0	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_032219	exon10	c.C1457A	p.T486K	GTCGCCGTGCTGG		15	2	0.13	33	0	0				22	0	0				T	675970	G	T	675970	3	4	124	1	0	0	0	0	1	0	0	0	9586	1145	40	1	226	1	MFSD7	4	675970	Missense_Mutation	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10		675970	190478306	12	9039											
N4BP2	55728	broad.mit.edu	37	chr4	40099152	40099152	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttctgatctggatcctgaTgtagtgtatttgatgctttc	9	6	2	3	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	N4BP2	NM_018177	exon3	c.T192A	p.D64E	TCCTGATGTAGTG		38	3	0.08	58	0	0		166		1	0	0				A	40099152	T	A	40099152	3	1	124	1	0	0	0	0	1	0	0	0	10157	1461	51	5	194	5	N4BP2	4	40099152	Missense_Mutation	SNP	T	TCGA-XE-AAOJ-01A-12D-A435-10	39423182	40099152	151055124	13	9040											
BEND4	389206	broad.mit.edu;mdanderson.org	37	chr4	42145560	42145560	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcgtcctcctcctcctcCtcttctggcagtgtagatga	7	16	2	2	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	BEND4	NM_001159547	exon3	c.G939A	p.E313E	CTCCTCCTCTTCT		71	4	0.06	77	0	0		67		0	0					T	42145560	C	T	42145560	2	4	124	1	0	0	0	0	0	0	0	1	1398	680	24	3		3	BEND4	4	42145560	Silent	SNP	C	TCGA-XE-AAOJ-01A-12D-A435-10	2046408	42145560	149008716	14	9041											
PDHA2	5161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	96761797	96761797	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgggggcaatggcatcgtcGgtgcacagggccccctgggc	17	12	0	0	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	PDHA2,NS,carcinoma,0,1	PDHA2	NM_005390	exon1	c.G496A	p.G166S	ATCGTCGGTGCAC		31	12	0.39	57	0	0		0	1	0	0					A	96761797	G	A	96761797	3	1	124	1	0	0	0	0	1	0	0	0	11711	1116	39	1	498	1	PDHA2	4	96761797	Missense_Mutation	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10	54616237	96761797	94392479	15	9042											
ELF2	1998	broad.mit.edu	37	chr4	140046335	140046335	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctgtttccacattctcgGtctcaacttcttgttcttct	4	13	5	0	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	ELF2	NM_201999	exon3	c.C221A	p.A74E	TTCTCGGTCTCAA		103	4	0.04	72	0	0		43		20	0	0				T	140046335	G	T	140046335	3	4	124	1	0	0	0	0	1	0	0	0	5082	1261	44	3	1650	3	ELF2	4	140046335	Missense_Mutation	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10	43284538	140046335	51107941	16	9043											
SKP2	6502	mdanderson.org	37	chr5	36168536	36168536	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tggaaggcctgcggctttcgGatcccattgtcaagtgagtg	14	9	1	1	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	SKP2_ENST00000274255,NS,carcinoma,0,1	SKP2_ENST00000274255	NM_005983	exon5	c.G658T	p.D220Y	CTTTCGGATCCCA		49	3	0.06	51	0	0		0	1	30	0	0				T	36168536	G	T	36168536	3	4	124	1	0	0	0	0	1	0	0	0	14416	1174	41	3	676	3	SKP2	5	36168536	Missense_Mutation	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10		36168536	144746724	17	9044											
ATXN1	6310	mdanderson.org	37	chr6	16327894	16327894	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgctgCtgctgctgctgctgatgctg	14	12	0	1	rs201040133		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001128164	exon7	c.G648T	p.Q216H	CTGCTGCTGCTGC		39	4	0.1	35	1	0.0285714286				2	0	0				A	16327894	C	A	16327894	3	1	124	1	0	0	0	0	1	0	0	0	1207	796	28	2	1807	2	ATXN1	6	16327894	Missense_Mutation	SNP	C	TCGA-XE-AAOJ-01A-12D-A435-10		16327894	154787173	18	9045											
UPP1	7378	mdanderson.org	37	chr7	48139313	48139313	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	caaacatagcaaaaatgaaaGaagatattctctatcatttc	4	7	2	3	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_003364	exon4	c.G91T	p.E31X	ATGAAAGAAGATA		48	3	0.06	69	0	0				2	0	0				T	48139313	G	T	48139313	4	4	124	1	0	0	0	0	0	1	0	0	17071	943	33	3	97	3	UPP1	7	48139313	Nonsense_Mutation	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10		48139313	110999350	19	9046											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	48654898	48654898	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcatggaggagtgtgaggCtctttgcacaagactggcca	14	9	1	2	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_152701	exon59	c.C14762G	p.A4921G	GTGAGGCTCTTTG		129	42	0.33	171	0	0				0	0					G	48654898	C	G	48654898	3	3	124	1	0	0	0	0	1	0	0	0	31	797	28	5	14825	5	ABCA13	7	48654898	Missense_Mutation	SNP	C	TCGA-XE-AAOJ-01A-12D-A435-10	515585	48654898	110483765	20	9047											
MEPCE	56257	hgsc.bcm.edu	37	chr7	100028454	100028454	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	caccggggacagcaccaccaGcagcagcaggcagccggagg	15	15	0	0	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	MEPCE,NS,carcinoma,0,1	MEPCE	NM_019606	exon1	c.G813C	p.Q271H	CCACCAGCAGCAG		40	2	0.05	47	1	0.0212765957		0	1	15	0	0				C	100028454	G	C	100028454	3	2	124	1	0	0	0	0	1	0	0	0	9526	962	34	5	815	5	MEPCE	7	100028454	Missense_Mutation	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10	51373556	100028454	59110209	21	9048											
TRPV6	55503	bcgsc.ca	37	chr7	142573614	142573614	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgaggtcagtggtccatacGtccactgggtgtgcttccgc	13	12	1	0	rs201899094	bycluster;alternate_allele	TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	TRPV6	NM_018646	exon7	c.C806A	p.T269K	CCATACGTCCACT		54	4	0.07	70	0	0		108		1	0	0				T	142573614	G	T	142573614	3	4	124	1	0	0	0	0	1	0	0	0	16660	1145	40	1	1407	1	TRPV6	7	142573614	Missense_Mutation	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10	42545160	142573614	16565049	22	9049											
MLL3	58508	mdanderson.org	37	chr7	151962269	151962269	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtctcccgggctgtcgcaCactgcacagtttgcatcttc	10	14	2	0	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_170606	exon8	c.G1038A	p.V346V	GTCGCACACTGCA		123	9	0.07	117	0	0				1	0	0				T	151962269	C	T	151962269	2	4	124	1	0	0	0	0	0	0	0	1	9669	465	17	3		3	MLL3	7	151962269	Silent	SNP	C	TCGA-XE-AAOJ-01A-12D-A435-10	9388655	151962269	7176394	23	9050											
TTC39B	158219	mdanderson.org	37	chr9	15175041	15175041	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtttctaggaactttatgGccttgtcaatttccccctgg	8	11	2	0	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_152574	exon19	c.C1934A	p.A645D	TTTATGGCCTTGT		44	3	0.07	55	0	0				4	0	0				T	15175041	G	T	15175041	3	4	124	1	0	0	0	0	1	0	0	0	16769	1203	42	2	122	2	TTC39B	9	15175041	Missense_Mutation	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10		15175041	126038390	24	9051											
COL27A1	85301	mdanderson.org	37	chr9	117002729	117002729	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagggtaagcctggagccCgaggcctgccgggaccccgt	15	16	0	0	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_032888	exon21	c.C2797A	p.R933R	GGAGCCCGAGGCC		33	3	0.09	45	0	0				39	0	0				A	117002729	C	A	117002729	2	1	124	1	0	0	0	0	0	0	0	1	3708	644	23	1		1	COL27A1	9	117002729	Silent	SNP	C	TCGA-XE-AAOJ-01A-12D-A435-10	101827688	117002729	24210702	25	9052											
STXBP1	6812	mdanderson.org	37	chr9	130434352	130434352	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caccatgcgggacctgtcccAgatgctgaagaagatgcctc	11	13	0	4	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001032221	exon12	c.A986G	p.Q329R	TGTCCCAGATGCT		36	3	0.08	59	0	0				9	0	0				G	130434352	A	G	130434352	3	3	124	1	0	0	0	0	1	0	0	0	15407	188	7	4	1032	4	STXBP1	9	130434352	Missense_Mutation	SNP	A	TCGA-XE-AAOJ-01A-12D-A435-10	13431623	130434352	10779079	26	9053											
PTGES	9536	broad.mit.edu	37	chr9	132501706	132501707	+	Translation_Start_Site	INS	-	-	ACACAT													gggctaagaaacatacacacINSacacatacacacacacgggc					rs137962222	bycluster;by1000genomes	TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	PTGES	.	.	.	.	TACACACACACAT		5	3	0.6	5	0	0		7		11	0	0				ACACAT	132501707	-	ACACAT	132501706	6	5	124	1	0	1	1	0	0	0	0	0	12795	493	17	0		0	PTGES	9	132501706	Translation_Start_Site	INS	-	TCGA-XE-AAOJ-01A-12D-A435-10	2067354	132501706	8711725	27	9054											
ANKRD30A	91074	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	37442535	37442535	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttcacagaaggatgtgtgTttacccaaggctacacatca	9	9	2	1	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	ANKRD30A	NM_052997	exon13	c.T1575G	p.C525W	TGTGTGTTTACCC		531	34	0.06	576	1	0.0017361111		448		0	0					G	37442535	T	G	37442535	3	3	124	1	0	0	0	0	1	0	0	0	654	1731	60	4	1625	4	ANKRD30A	10	37442535	Missense_Mutation	SNP	T	TCGA-XE-AAOJ-01A-12D-A435-10		37442535	98092212	28	9055											
PCDH15	65217	mdanderson.org	37	chr10	56129034	56129034	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagtgtatgttcatcggtGgctgcaatgtagaaattgca	13	5	1	1	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001142763	exon6	c.C335A	p.P112Q	ATCGGTGGCTGCA		25	3	0.12	36	0	0				0	0					T	56129034	G	T	56129034	3	4	124	1	0	0	0	0	1	0	0	0	11557	1362	47	3	7307	3	PCDH15	10	56129034	Missense_Mutation	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10	18686499	56129034	79405713	29	9056											
UBTD1	80019	mdanderson.org	37	chr10	99330066	99330066	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgaaggtgcgcctgtccaCgggcaaggacgtgaggctca	16	11	1	2	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_024954	exon3	c.C470T	p.T157M	TGTCCACGGGCAA		46	3	0.07	27	0	0				27	0	0				T	99330066	C	T	99330066	3	4	124	1	0	0	0	0	1	0	0	0	16967	536	19	1	480	1	UBTD1	10	99330066	Missense_Mutation	SNP	C	TCGA-XE-AAOJ-01A-12D-A435-10	43201032	99330066	36204681	30	9057											
OR5L1	219437	hgsc.bcm.edu	37	chr11	55579329	55579330	+	Silent	DNP	TT	TT	CC													tttgtggccatctgtaacccTttgctatacacagtcaccat					novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	TT	TT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	OR5L1,NS,carcinoma,-1,1	OR5L1	NM_001004738	exon1	c.T388C	p.N128N	TAACCCTTTGCTA		100	5	0.05	74	0	0	0	-1	1	0	0					CC	55579330	TT	CC	55579329	2	2	124	1	0	0	0	0	0	0	0	1	11216	1596	56	4		4	OR5L1	11	55579329	Silent	DNP	TT	TCGA-XE-AAOJ-01A-12D-A435-10		55579329	79427187	31	9058											
CLP1	10978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr11	57427264	57427264	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttggaacagatgcggaggCaagcggaaaaggaagaagag	16	6	0	3	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001142597	exon2	c.C316T	p.Q106X	CGGAGGCAAGCGG		101	29	0.29	94	0	0				15	0	0				T	57427264	C	T	57427264	4	4	124	1	0	0	0	0	0	1	0	0	3573	711	25	2	318	2	CLP1	11	57427264	Nonsense_Mutation	SNP	C	TCGA-XE-AAOJ-01A-12D-A435-10	1847935	57427264	77579252	32	9059											
OR1S2	219958	hgsc.bcm.edu	37	chr11	57970760	57970760	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aagctgtagatgaaggggttCatcatgggtgtcaccacagt	13	7	3	2	rs200054918		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	OR1S2,NS,carcinoma,0,3	OR1S2	NM_001004459	exon1	c.G894A	p.M298I	GGGGTTCATCATG		96	5	0.05	79	2	0.0253164557		0	3	0	0					T	57970760	C	T	57970760	3	4	124	1	0	0	0	0	1	0	0	0	11020	826	29	3	86	3	OR1S2	11	57970760	Missense_Mutation	SNP	C	TCGA-XE-AAOJ-01A-12D-A435-10	543496	57970760	77035756	33	9060											
VEGFB	7423	mdanderson.org	37	chr11	64003785	64003785	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtccctggaagaacacagCcagtgtgaatgcaggtgcca	12	10	0	2	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001243733	exon4	c.C360T	p.S120S	ACACAGCCAGTGT		37	3	0.08	35	0	0				150	0	0				T	64003785	C	T	64003785	2	4	124	1	0	0	0	0	0	0	0	1	17210	738	26	2		2	VEGFB	11	64003785	Silent	SNP	C	TCGA-XE-AAOJ-01A-12D-A435-10	6033025	64003785	71002731	34	9061											
PLCB3	5331	mdanderson.org	37	chr11	64034987	64034987	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcagcgggcacctgtcgGgcgctgactcggagagccag	18	12	0	2	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_000932	exon31	c.G3664T	p.G1222C	CTGTCGGGCGCTG		19	2	0.11	14	0	0				93	0	0				T	64034987	G	T	64034987	3	4	124	1	0	0	0	0	1	0	0	0	12076	1232	43	3	3786	3	PLCB3	11	64034987	Missense_Mutation	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10	31202	64034987	70971529	35	9062											
UNC93B1	81622	broad.mit.edu;mdanderson.org	37	chr11	67763107	67763107	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtccagtcttgttcagggcActgcccacaccccaaagggc	10	15	2	0	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	.	.	.	.	CAGGGCACTGCCC		80	8	0.1	60	0	0				43	0	0				G	67763107	A	G	67763107	2	3	124	1	0	0	0	0	0	0	0	1	17056	156	6	4		4	UNC93B1	11	67763107	Silent	SNP	A	TCGA-XE-AAOJ-01A-12D-A435-10	3728120	67763107	67243409	36	9063											
NADSYN1	55191	mdanderson.org	37	chr11	71192991	71192991	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agggtttttgctgcccttgaGtggcggggtggacagcgcag	18	8	0	1	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_018161	exon13	c.G1070T	p.S357I	CCTTGAGTGGCGG		45	3	0.07	41	0	0				29	0	0				T	71192991	G	T	71192991	3	4	124	1	0	0	0	0	1	0	0	0	10185	1029	36	3	1120	3	NADSYN1	11	71192991	Missense_Mutation	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10	3429884	71192991	63813525	37	9064											
NCAPD2	9918	broad.mit.edu	37	chr12	6637351	6637351	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcttagtgccactttctgCgactcccagcttcgtcttct	7	15	4	0	rs376232892		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	NCAPD2	NM_014865	exon25	c.C3156T	p.C1052C	TTTCTGCGACTCC		613	9	0.01	154	0	0		99		404	0	0				T	6637351	C	T	6637351	2	4	124	1	0	0	0	0	0	0	0	1	10251	776	27	1		1	NCAPD2	12	6637351	Silent	SNP	C	TCGA-XE-AAOJ-01A-12D-A435-10		6637351	127214544	38	9065											
A2M	2	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	9258885	9258885	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagtccactttcacaaatgAgagtttggttatggttcttg	10	6	2	2	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_000014	exon10	c.T1051G	p.S351A	CAAATGAGAGTTT		292	19	0.07	118	0	0				77	3	0.04				C	9258885	A	C	9258885	3	2	124	1	0	0	0	0	1	0	0	0	4	304	11	4	3481	4	A2M	12	9258885	Missense_Mutation	SNP	A	TCGA-XE-AAOJ-01A-12D-A435-10	2621534	9258885	124593010	39	9066											
PRR4	11272	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	10999711	10999711	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgctggtctgtccctctggAagaatgatgatgcttcctgc	11	10	2	3	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_007244	exon3	c.T356C	p.F119S	CTCTGGAAGAATG		276	28	0.1	100	0	0				54	4	0.07				G	10999711	A	G	10999711	3	3	124	1	0	0	0	0	1	0	0	0	12648	246	9	4	52	4	PRR4	12	10999711	Missense_Mutation	SNP	A	TCGA-XE-AAOJ-01A-12D-A435-10	1740826	10999711	122852184	40	9067											
ATP7B	540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	52518252	52518252	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caagtccacgtacctctttaCagtatttggtgactgccacg	8	12	1	1	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_000053	exon14	c.G3236A	p.C1079Y	TCTTTACAGTATT		35	22	0.63	58	0	0				4	0	0				T	52518252	C	T	52518252	3	4	124	1	0	0	0	0	1	0	0	0	1189	478	17	3	1193	3	ATP7B	13	52518252	Missense_Mutation	SNP	C	TCGA-XE-AAOJ-01A-12D-A435-10		52518252	62651626	41	9068											
IPO5	3843	ucsc.edu;bcgsc.ca	37	chr13	98669019	98669019	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atattctgaccaaagtgtcaGatattttacactcaatattc	4	8	3	2	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	IPO5	NM_002271	exon25	c.G2584T	p.D862Y	GTGTCAGATATTT		44	4	0.09	79	0	0		90		91	0	0				T	98669019	G	T	98669019	3	4	124	1	0	0	0	0	1	0	0	0	7839	942	33	3	2674	3	IPO5	13	98669019	Missense_Mutation	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10	46150767	98669019	16500859	42	9069											
EML5	161436	broad.mit.edu	37	chr14	89093274	89093274	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaagagctcttcctgccaGggtccagaacttcacatgtt	9	11	2	3	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	EML5	NM_183387	exon34	c.C4648A	p.L1550M	CTGCCAGGGTCCA		224	6	0.03	140	0	0		141		2	0	0				T	89093274	G	T	89093274	3	4	124	1	0	0	0	0	1	0	0	0	5128	991	35	3	1325	3	EML5	14	89093274	Missense_Mutation	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10		89093274	18256266	43	9070											
FAM98B	283742	hgsc.bcm.edu	37	chr15	38776833	38776833	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtggtggtggtggtggtggTggaggaggtggatatagaag	24	0	0	1	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	FAM98B_ENST00000397609,NS,carcinoma,0,2	FAM98B_ENST00000397609	NM_173611	exon8	c.T1275A	p.G425G	TGGTGGTGGAGGA		76	4	0.05	82	1	0.012195122		0	2	0	0					A	38776833	T	A	38776833	2	1	124	1	0	0	0	0	0	0	0	1	5689	1683	59	5		5	FAM98B	15	38776833	Silent	SNP	T	TCGA-XE-AAOJ-01A-12D-A435-10		38776833	63754559	44	9071											
DISP2	85455	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr15	40660083	40660083	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcaccatgcaccacttcggCtacctgctgctggtctccgg	10	17	1	0	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	DISP2	NM_033510	exon8	c.C1770T	p.G590G	CTTCGGCTACCTG		13	4	0.31	10	0	0		86		0	0					T	40660083	C	T	40660083	2	4	124	1	0	0	0	0	0	0	0	1	4568	784	28	2		2	DISP2	15	40660083	Silent	SNP	C	TCGA-XE-AAOJ-01A-12D-A435-10	1883250	40660083	61871309	45	9072											
UNC13C	440279	bcgsc.ca;mdanderson.org	37	chr15	54592474	54592474	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	aaatcccagaagtcaaagggGatgaagcctggaaggttttc	12	7	1	2	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	UNC13C	NM_001080534	exon11	c.G4171T	p.D1391Y	AAAGGGGATGAAG		85	5	0.06	99	0	0		674		1	0	0				T	54592474	G	T	54592474	3	4	124	1	0	0	0	0	1	0	0	0	17045	1174	41	3	4213	3	UNC13C	15	54592474	Missense_Mutation	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10	13932391	54592474	47938918	46	9073											
ATP2C2	9914	mdanderson.org	37	chr16	84402237	84402237	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccatggtcgagggacgcGtctccgagttcctgaagaaa	12	11	2	2	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	ATP2C2,colon,carcinoma,0,1	ATP2C2	NM_014861	exon1	c.G16T	p.V6F	GGACGCGTCTCCG		42	3	0.07	69	0	0		0	1	0	0					T	84402237	G	T	84402237	3	4	124	1	0	0	0	0	1	0	0	0	1143	1145	40	1	18	1	ATP2C2	16	84402237	Missense_Mutation	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10		84402237	5952516	47	9074											
CENPBD1	92806	mdanderson.org	37	chr16	90038253	90038253	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cgtcgtaacacttccaatttGaggtcaagggtaatcgcttt	9	9	1	1	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_145039	exon1	c.C78A	p.L26L	CAATTTGAGGTCA		37	3	0.08	43	0	0				3	0	0				T	90038253	G	T	90038253	2	4	124	1	0	0	0	0	0	0	0	1	3250	1277	45	3		3	CENPBD1	16	90038253	Silent	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10	5636016	90038253	316500	48	9075											
C17orf97	400566	mdanderson.org	37	chr17	263637	263637	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	accccaaggccctcaagggcTtccaccccgaccccgaggcc	9	21	1	0	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001013672	exon2	c.T1003A	p.F335I	AAGGGCTTCCACC		132	9	0.07	229	6	0.0262008734				11	0	0				A	263637	T	A	263637	3	1	124	1	0	0	0	0	1	0	0	0	1903	1609	56	5		5	C17orf97	17	263637	Missense_Mutation	SNP	T	TCGA-XE-AAOJ-01A-12D-A435-10		263637	80931573	49	9076											
WDR81	124997	mdanderson.org	37	chr17	1631759	1631759	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtggtgctagaggaggaggAgggggagcaggaggaggtca	23	4	1	1	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001163809	exon1	c.A3506G	p.E1169G	AGGAGGAGGGGGA		77	4	0.05	75	1	0.0133333333				0	0					G	1631759	A	G	1631759	3	3	124	1	0	0	0	0	1	0	0	0	17389	304	11	4	3570	4	WDR81	17	1631759	Missense_Mutation	SNP	A	TCGA-XE-AAOJ-01A-12D-A435-10	1368122	1631759	79563451	50	9077											
RAP1GAP2	23108	mdanderson.org	37	chr17	2901631	2901631	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacatgcctacatcgtcgtGcaggtcgagaccccaggcac	10	14	0	1	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_015085	exon14	c.G1161A	p.V387V	CGTCGTGCAGGTC		51	3	0.06	60	0	0				2	0	0				A	2901631	G	A	2901631	2	1	124	1	0	0	0	0	0	0	0	1	13089	1306	46	2		2	RAP1GAP2	17	2901631	Silent	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10	1269872	2901631	78293579	51	9078											
P2RX5	5026	mdanderson.org	37	chr17	3593417	3593417	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctttatgaaaatggtgaaGtcttcggcctccttcaggaa	9	8	3	2	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001204519	exon6	c.C561A	p.D187E	GGTGAAGTCTTCG		33	3	0.09	47	0	0				0	0					T	3593417	G	T	3593417	3	4	124	1	0	0	0	0	1	0	0	0	11389	1020	36	3	735	3	P2RX5	17	3593417	Missense_Mutation	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10	691786	3593417	77601793	52	9079											
ANKFY1	51479	mdanderson.org	37	chr17	4086823	4086823	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggctccagagcccagcaGctgggctgcgatcgtgtgca	16	13	0	1	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001257999	exon14	c.C1948A	p.L650M	CCAGCAGCTGGGC		39	3	0.08	35	0	0				7	0	0				T	4086823	G	T	4086823	3	4	124	1	0	0	0	0	1	0	0	0	622	962	34	2	1738	2	ANKFY1	17	4086823	Missense_Mutation	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10	493406	4086823	77108387	53	9080											
DNAH2	146754	broad.mit.edu	37	chr17	7661813	7661813	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	caggcctctcttatgcacagGattattgccatgctgtcccc	8	14	1	0	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	DNAH2	NM_020877	exon13	c.G2052T	p.R684S	GCACAGGATTATT		108	4	0.04	109	0	0		498		0	0					T	7661813	G	T	7661813	5	4	124	1	0	0	0	0	0	0	1	0	4630	1188	41	3	2102	3	DNAH2	17	7661813	Splice_Site	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10	3574990	7661813	73533397	54	9081											
GUCY2D	3000	mdanderson.org	37	chr17	7907368	7907368	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttcgcagggcccacgatgCcgtgctcaccctcacgcgcc	11	19	2	0	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_000180	exon3	c.C920T	p.A307V	ACGATGCCGTGCT		15	2	0.13	30	0	0				0	0					T	7907368	C	T	7907368	3	4	124	1	0	0	0	0	1	0	0	0	6937	739	26	2	926	2	GUCY2D	17	7907368	Missense_Mutation	SNP	C	TCGA-XE-AAOJ-01A-12D-A435-10	245555	7907368	73287842	55	9082											
GRP	2922	broad.mit.edu	37	chr18	56887556	56887556	+	Frame_Shift_Del	DEL	G	G	-													ggtcctctgcctggcgccccGggggcgagcggtcccgctgc					novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	GRP	NM_001012512	exon1	c.59delG	p.R20fs	CGCCCCGGGGGCG		6	2	0.33	10	0	0		17		9	0	0				-	56887556	G	-	56887556	7	5	124	1	0	1	0	1	0	0	0	0	6845	1116	39	0	61	0	GRP	18	56887556	Frame_Shift_Del	DEL	G	TCGA-XE-AAOJ-01A-12D-A435-10		56887556	21189692	56	9083											
REEP6	92840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	1496340	1496340	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaacggggctctcatgctGtatcagcgcgtcgtgcgtcc	14	12	2	0	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_138393	exon4	c.G405A	p.L135L	CATGCTGTATCAG		50	12	0.24	47	0	0				53	19	0.36				A	1496340	G	A	1496340	2	1	124	1	0	0	0	0	0	0	0	1	13260	1364	48	3		3	REEP6	19	1496340	Silent	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10		1496340	57632643	57	9084											
MRI1	84245	mdanderson.org	37	chr19	13879417	13879417	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgggccgcctggagcatgCcttctgcacagagacccggc	13	16	1	1	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001031727	exon4	c.C590T	p.A197V	AGCATGCCTTCTG		30	3	0.1	51	0	0				31	0	0				T	13879417	C	T	13879417	3	4	124	1	0	0	0	0	1	0	0	0	9818	739	26	2	697	2	MRI1	19	13879417	Missense_Mutation	SNP	C	TCGA-XE-AAOJ-01A-12D-A435-10	12383077	13879417	45249566	58	9085											
TMC4	147798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	54668249	54668249	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgaccaccagcaggttgagCagcacccgcaccaaccaaac	9	17	0	1	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001145303	exon7	c.G1050A	p.L350L	GTTGAGCAGCACC		62	20	0.32	68	0	0				5	2	0.4				T	54668249	C	T	54668249	2	4	124	1	0	0	0	0	0	0	0	1	16046	697	25	2		2	TMC4	19	54668249	Silent	SNP	C	TCGA-XE-AAOJ-01A-12D-A435-10	40788832	54668249	4460734	59	9086											
TMEM190	147744	mdanderson.org	37	chr19	55889031	55889031	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcgatagccccaacctctgCctgcgtctccggtgctgcta	9	16	2	0	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_139172	exon3	c.C165T	p.C55C	CCTCTGCCTGCGT		41	3	0.07	48	0	0				7	0	0				T	55889031	C	T	55889031	2	4	124	1	0	0	0	0	0	0	0	1	16173	747	26	2		2	TMEM190	19	55889031	Silent	SNP	C	TCGA-XE-AAOJ-01A-12D-A435-10	1220782	55889031	3239952	60	9087											
ZNF217	7764	hgsc.bcm.edu;mdanderson.org	37	chr20	52199327	52199327	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatccatgtacattaagagGgattgagttggcatgtttcc	10	8	0	2	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_006526	exon1	c.C39A	p.S13S	TAAGAGGGATTGA		91	4	0.04	56	0	0				8	0	0				T	52199327	G	T	52199327	2	4	124	1	0	0	0	0	0	0	0	1	17829	1219	43	3		3	ZNF217	20	52199327	Silent	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10		52199327	10826193	61	9088											
SLC2A4RG	56731	mdanderson.org	37	chr20	62374111	62374111	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtcggagcctgcccaccCgccttgtcctccaggatcgg	13	16	0	0	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_020062	exon7	c.C1020A	p.P340P	CCCACCCGCCTTG		30	3	0.1	26	0	0				217	0	0				A	62374111	C	A	62374111	2	1	124	1	0	0	0	0	0	0	0	1	14601	639	23	1		1	SLC2A4RG	20	62374111	Silent	SNP	C	TCGA-XE-AAOJ-01A-12D-A435-10	10174784	62374111	651409	62	9089											
CBS	875	hgsc.bcm.edu;mdanderson.org	37	chr21	44479351	44479351	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttaccagggcttcttctccGtgaggtcctcctccttcaga	8	15	3	2	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_000071	exon13	c.C1208A	p.T403K	TTCTCCGTGAGGT		76	4	0.05	48	0	0				119	1	0.01				T	44479351	G	T	44479351	3	4	124	1	0	0	0	0	1	0	0	0	2729	1145	40	1	467	1	CBS	21	44479351	Missense_Mutation	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10		44479351	3650544	63	9090											
KRTAP10-10	353333	mdanderson.org	37	chr21	46058034	46058034	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttccctcctctgccgccccGtgtgctcccgccctgcctgc	8	22	1	0	rs1785472	by2hit2allele	TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_181688	exon1	c.G700A	p.V234M	CGCCCCGTGTGCT		85	6	0.07	43	1	0.023255814				0	0					A	46058034	G	A	46058034	3	1	124	1	0	0	0	0	1	0	0	0	8548	1145	40	1	702	1	KRTAP10-10	21	46058034	Missense_Mutation	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10	1578683	46058034	2071861	64	9091											
IL17RA	23765	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr22	17584446	17584446	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actctacgcaaccttaaaggGtgctgtcgccaccaagtgca	9	13	1	0	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_014339	exon8	c.G825T	p.G275G	TAAAGGGTGCTGT		83	6	0.07	63	0	0				12	2	0.17				T	17584446	G	T	17584446	2	4	124	1	0	0	0	0	0	0	0	1	7682	1248	44	3		3	IL17RA	22	17584446	Silent	SNP	G	TCGA-XE-AAOJ-01A-12D-A435-10		17584446	33720120	65	9092											
MTMR3	8897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	30416250	30416250	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggtcatcatagatcttgcCttgtaaatagtggcaaggac	10	7	3	1	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_153050	exon17	c.C2602T	p.L868F	TCTTGCCTTGTAA		96	38	0.4	68	0	0				13	4	0.31				T	30416250	C	T	30416250	3	4	124	1	0	0	0	0	1	0	0	0	9992	681	24	3	2660	3	MTMR3	22	30416250	Missense_Mutation	SNP	C	TCGA-XE-AAOJ-01A-12D-A435-10	12831804	30416250	20888316	66	9093											
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	34209037	34209037	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggccccatccttgatgaCcaggaaatcaaactgaggct	11	11	1	3	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_052896	exon14	c.G1897T	p.V633F	TGATGACCAGGAA		55	12	0.22	57	0	0				0	0					A	34209037	C	A	34209037	3	1	125	1	0	0	0	0	1	0	0	0	3970	507	18	3	8790	3	CSMD2	1	34209037	Missense_Mutation	SNP	C	TCGA-XE-AAOL-01A-11D-A435-10		34209037	215041584	1	9094											
DMAP1	55929	mdanderson.org	37	chr1	44685093	44685093	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggctgttcctgagactGcaggcatcaagtttccagac	10	13	1	2	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001034024	exon8	c.G922T	p.A308S	GAGACTGCAGGCA		41	3	0.07	48	0	0				32	0	0				T	44685093	G	T	44685093	3	4	125	1	0	0	0	0	1	0	0	0	4604	1319	46	2	948	2	DMAP1	1	44685093	Missense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10	10476056	44685093	204565528	2	9095											
TCTEX1D4	343521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	45271711	45271711	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgtggaccgtggccaccgcGaagagcgaggtgttggtgta	17	10	0	1	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001013632	exon2	c.C630T	p.F210F	CACCGCGAAGAGC		67	19	0.28	66	0	0				1	1	1				A	45271711	G	A	45271711	2	1	125	1	0	0	0	0	0	0	0	1	15779	1049	37	1		1	TCTEX1D4	1	45271711	Silent	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10	586618	45271711	203978910	3	9096											
TMEM48	55706	mdanderson.org	37	chr1	54291599	54291599	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taagcaggtttgcgcagcagGgctaccaaagctgaagggaa	14	8	0	1	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_018087	exon5	c.C466A	p.P156T	CAGCAGGGCTACC		31	3	0.1	44	0	0				1	0	0				T	54291599	G	T	54291599	3	4	125	1	0	0	0	0	1	0	0	0	16231	1232	43	3	1614	3	TMEM48	1	54291599	Missense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10	9019888	54291599	194959022	4	9097											
MAGI3	260425	broad.mit.edu	37	chr1	114215976	114215976	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tatccagtagagctggagagAggcccccggggctttggatt	15	9	0	2	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	MAGI3	NM_152900	exon19	c.A3078G	p.R1026R	GGAGAGAGGCCCC		129	3	0.02	133	0	0		181		0	0					G	114215976	A	G	114215976	2	3	125	1	0	0	0	0	0	0	0	1	9241	301	11	4		4	MAGI3	1	114215976	Silent	SNP	A	TCGA-XE-AAOL-01A-11D-A435-10	59924377	114215976	135034645	5	9098											
TRIM45	80263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	117663450	117663450	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggccttccccacgtaggCtctccagcatcacatcattc	6	18	3	0	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001145635	exon1	c.G374A	p.S125N	CGTAGGCTCTCCA		103	26	0.25	120	0	0				1	1	1				T	117663450	C	T	117663450	3	4	125	1	0	0	0	0	1	0	0	0	16580	797	28	2	1392	2	TRIM45	1	117663450	Missense_Mutation	SNP	C	TCGA-XE-AAOL-01A-11D-A435-10	3447474	117663450	131587171	6	9099											
RUSC1	23623	broad.mit.edu	37	chr1	155292770	155292770	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtcccgccccggcccccAcccccgcctgtccctccccg	8	26	0	0	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	RUSC1	NM_001105204	exon2	c.A1206C	p.P402P	GCCCCCACCCCCG		39	21	0.54	39	14	0.358974359		85		0	0					C	155292770	A	C	155292770	2	2	125	1	0	0	0	0	0	0	0	1	13801	146	6	4		4	RUSC1	1	155292770	Silent	SNP	A	TCGA-XE-AAOL-01A-11D-A435-10	37629320	155292770	93957851	7	9100											
ASH1L	55870	broad.mit.edu	37	chr1	155340657	155340657	+	Frame_Shift_Del	DEL	T	T	-													ttggttctgattccccaaccTttttcctcagctcgaaatcg					novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	ASH1L	NM_018489	exon11	c.6450delA	p.K2150fs	CCAACCTTTTTCC		183	7	0.04	142	0	0		279		1	0	0				-	155340657	T	-	155340657	7	5	125	1	0	1	0	1	0	0	0	0	1040	1606	56	0	2516	0	ASH1L	1	155340657	Frame_Shift_Del	DEL	T	TCGA-XE-AAOL-01A-11D-A435-10	47887	155340657	93909964	8	9101											
SH2D2A	9047	mdanderson.org	37	chr1	156783685	156783685	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctccccgtaggggctgagCgggtgcgcggtgtagtgcag	19	10	1	1	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001161441	exon5	c.G552A	p.P184P	GCTGAGCGGGTGC		16	2	0.13	8	0	0				1	0	0				T	156783685	C	T	156783685	2	4	125	1	0	0	0	0	0	0	0	1	14285	755	27	1		1	SH2D2A	1	156783685	Silent	SNP	C	TCGA-XE-AAOL-01A-11D-A435-10	1443028	156783685	92466936	9	9102											
GUK1	2987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	228335314	228335314	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgattgccaccccctttttAggagcagcggctgcggcagc	12	14	0	1	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001242839	exon6	c.391-2A>G	.	CTTTTTAGGAGCA		96	35	0.36	57	0	0				2	1	0.5				G	228335314	A	G	228335314	5	3	125	1	0	0	0	0	0	0	1	0	6940	434	15	4	474	4	GUK1	1	228335314	Splice_Site	SNP	A	TCGA-XE-AAOL-01A-11D-A435-10	71551629	228335314	20915307	10	9103											
IL1RL1	9173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	102955396	102955396	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggtattactcacaaacaaAcaaaagtattcccactcagg	5	10	2	0	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_016232	exon3	c.A161G	p.N54S	AAACAAACAAAAG		182	38	0.21	143	0	0				0	0					G	102955396	A	G	102955396	3	3	125	1	0	0	0	0	1	0	0	0	7706	43	2	4	167	4	IL1RL1	2	102955396	Missense_Mutation	SNP	A	TCGA-XE-AAOL-01A-11D-A435-10		102955396	140243977	11	9104											
RFTN1	23180	mdanderson.org	37	chr3	16358655	16358655	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctcattttcttctgcttGttgtttgtctctggcactga	7	10	4	1	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_015150	exon10	c.C1417A	p.Q473K	CTGCTTGTTGTTT		48	4	0.08	83	0	0				4	0	0				T	16358655	G	T	16358655	3	4	125	1	0	0	0	0	1	0	0	0	13309	1386	48	3	323	3	RFTN1	3	16358655	Missense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10		16358655	181663775	12	9105											
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr3	130128890	130128890	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caataacatcaaaggacaaaAgggctccaaaggagaacaag	9	8	1	1	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_153264	exon19	c.A4580G	p.K1527R	GACAAAAGGGCTC		95	4	0.04	106	0	0				0	0					G	130128890	A	G	130128890	3	3	125	1	0	0	0	0	1	0	0	0	3725	72	3	4	4650	4	COL6A5	3	130128890	Missense_Mutation	SNP	A	TCGA-XE-AAOL-01A-11D-A435-10	113770235	130128890	67893540	13	9106											
TRPC7	57113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	135692524	135692524	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgatgcgggcgcccttgagCagcaggatgtgcacgatctc	14	12	1	1	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001167576	exon2	c.G552A	p.L184L	CTTGAGCAGCAGG		66	28	0.42	75	0	0				0	0					T	135692524	C	T	135692524	2	4	125	1	0	0	0	0	0	0	0	1	16644	697	25	2		2	TRPC7	5	135692524	Silent	SNP	C	TCGA-XE-AAOL-01A-11D-A435-10		135692524	45222736	14	9107											
PCDHA2	56146	mdanderson.org	37	chr5	140176344	140176344	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaaggtgcgcgcagtggacGctgactcaggctacaacgcg	15	12	1	1	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	PCDHA2_ENST00000526136,NS,carcinoma,0,4	PCDHA2_ENST00000526136	NM_031495	exon1	c.G1795A	p.A599T	GTGGACGCTGACT		51	3	0.06	62	0	0		0	4	0	0					A	140176344	G	A	140176344	3	1	125	1	0	0	0	0	1	0	0	0	11570	1087	38	1	1797	1	PCDHA2	5	140176344	Missense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10	4483820	140176344	40738916	15	9108											
PCDHA6	56142	bcgsc.ca	37	chr5	140209479	140209479	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcgcagttgacgccgactcAggctacaacgcgtggctttc	12	14	1	1	rs201316180	by1000genomes	TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	PCDHA6	NM_018909	exon1	c.A1803G	p.S601S	CGACTCAGGCTAC		52	4	0.08	54	0	0		442		0	0					G	140209479	A	G	140209479	2	3	125	1	0	0	0	0	0	0	0	1	11574	175	7	4		4	PCDHA6	5	140209479	Silent	SNP	A	TCGA-XE-AAOL-01A-11D-A435-10	33135	140209479	40705781	16	9109											
FAM71B	153745	mdanderson.org	37	chr5	156590354	156590354	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cgccagcgctgtggtcacttGacctgggcctgcagatttgg	14	12	1	2	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_130899	exon2	c.C922A	p.Q308K	TCACTTGACCTGG		42	3	0.07	42	0	0				0	0					T	156590354	G	T	156590354	3	4	125	1	0	0	0	0	1	0	0	0	5642	1299	45	3	899	3	FAM71B	5	156590354	Missense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10	16380875	156590354	24324906	17	9110											
BOD1	91272	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	173043252	173043252	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggaagctgtcaaaaaggCcccggctcttgagctgctcc	13	13	2	1	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001159651	exon1	c.G188A	p.G63D	AAAAGGCCCCGGC		25	10	0.4	28	0	0				3	3	1				T	173043252	C	T	173043252	3	4	125	1	0	0	0	0	1	0	0	0	1481	739	26	2	413	2	BOD1	5	173043252	Missense_Mutation	SNP	C	TCGA-XE-AAOL-01A-11D-A435-10	16452898	173043252	7872008	18	9111											
RNF182	221687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	13977913	13977913	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	catccgggtgttagtgtggtTgctaggtttgctctacttca	12	8	2	0	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001165032	exon4	c.T563G	p.L188W	TGTGGTTGCTAGG		86	18	0.21	115	0	0				0	0					G	13977913	T	G	13977913	3	3	125	1	0	0	0	0	1	0	0	0	13517	1821	63	4	565	4	RNF182	6	13977913	Missense_Mutation	SNP	T	TCGA-XE-AAOL-01A-11D-A435-10		13977913	157137154	19	9112											
TMEM184A	202915	mdanderson.org	37	chr7	1586673	1586673	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccgccgctggggtgggtgCcgggcctgggcgcctcgtgc	20	14	0	0	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001097620	exon9	c.G1157A	p.G386D	TGGGTGCCGGGCC		43	3	0.07	16	0	0				0	0					T	1586673	C	T	1586673	3	4	125	1	0	0	0	0	1	0	0	0	16163	739	26	2	88	2	TMEM184A	7	1586673	Missense_Mutation	SNP	C	TCGA-XE-AAOL-01A-11D-A435-10		1586673	157551990	20	9113											
FOXP2	93986	mdanderson.org	37	chr7	114304486	114304486	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgggctgctcacctcagccGcacatgtaagtgtggttaac	11	13	2	0	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_148898	exon17	c.G2073T	p.P691P	TCAGCCGCACATG		52	3	0.06	54	0	0				0	0					T	114304486	G	T	114304486	2	4	125	1	0	0	0	0	0	0	0	1	6060	1074	38	1		1	FOXP2	7	114304486	Silent	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10	112717813	114304486	44834177	21	9114											
UBXN8	7993	broad.mit.edu	37	chr8	30608866	30608867	+	RNA	INS	-	-	A													atagtgagacctcatctcttINSaaaaaaaaagttttgaattt					novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	UBXN8	.	.	.	.	ATCTCTTAAAAAA		100	7	0.07	45	0	0		13		0	0					A	30608867	-	A	30608866	6	5	125	0	1	1	1	0	0	0	0	0	16978	1769	61	0		0	UBXN8	8	30608866	RNA	INS	-	TCGA-XE-AAOL-01A-11D-A435-10		30608866	115755156	22	9115											
NPR2	4882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	35792698	35792698	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaccccgacctgctgttagGtcccggttgcgtgtaccctg	12	14	0	1	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_003995	exon1	c.G293A	p.G98D	TGTTAGGTCCCGG		53	17	0.32	70	0	0				0	0					A	35792698	G	A	35792698	3	1	125	1	0	0	0	0	1	0	0	0	10642	1261	44	3	295	3	NPR2	9	35792698	Missense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10		35792698	105420733	23	9116											
NOL8	55035	mdanderson.org	37	chr9	95077301	95077301	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcaggacgaatacactgtcGgcctctgcggaggccagtgg	15	12	1	0	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_017948	exon7	c.C1606T	p.R536X	ACTGTCGGCCTCT		44	3	0.07	59	0	0				7	0	0				A	95077301	G	A	95077301	4	1	125	1	0	0	0	0	0	1	0	0	10573	1124	39	1	1941	1	NOL8	9	95077301	Nonsense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10	59284603	95077301	46136130	24	9117											
STAM	8027	mdanderson.org	37	chr10	17747006	17747006	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacctctcattgatgaaaaGctggaagatattgataggta	11	5	1	4	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_003473	exon11	c.G1038T	p.K346N	TGAAAAGCTGGAA		70	4	0.06	48	0	0				1	0	0				T	17747006	G	T	17747006	3	4	125	1	0	0	0	0	1	0	0	0	15303	962	34	2	1080	2	STAM	10	17747006	Missense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10		17747006	117787741	25	9118											
KIAA1217	56243	broad.mit.edu	37	chr10	24669920	24669920	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagggggatgctccaaccccTttttccagaggcagccggac	13	13	0	1	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	KIAA1217,NS,carcinoma,+1,1	KIAA1217	NM_019590	exon3	c.T477C	p.P159P	AACCCCTTTTTCC		108	4	0.04	70	1	0.0142857143		235	1	0	0					C	24669920	T	C	24669920	2	2	125	1	0	0	0	0	0	0	0	1	8257	1596	56	4		4	KIAA1217	10	24669920	Silent	SNP	T	TCGA-XE-AAOL-01A-11D-A435-10	6922914	24669920	110864827	26	9119											
FZD8	8325	mdanderson.org	37	chr10	35930317	35930317	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcagcagcgccaaggcgGccagcagcgaggtcacttcc	14	15	1	0	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_031866	exon1	c.C41A	p.A14D	AAGGCGGCCAGCA		34	3	0.09	25	0	0				0	0					T	35930317	G	T	35930317	3	4	125	1	0	0	0	0	1	0	0	0	6170	1203	42	2	2047	2	FZD8	10	35930317	Missense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10	11260397	35930317	99604430	27	9120											
TUB	7275	mdanderson.org	37	chr11	8122144	8122144	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagtctctatccgcccccGcaacgtgagtgtctacccct	9	16	2	2	rs144050808	bycluster;alternate_allele	TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	TUB,NS,carcinoma,0,1	TUB	NM_003320	exon11	c.G1376T	p.R459L	GCCCCCGCAACGT		38	3	0.08	63	0	0		0	1	0	0					T	8122144	G	T	8122144	3	4	125	1	0	0	0	0	1	0	0	0	16803	1087	38	1	1460	1	TUB	11	8122144	Missense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10		8122144	126884372	28	9121											
NAALADL1	10004	mdanderson.org	37	chr11	64820723	64820723	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtccccaggacacgggagaGctccaggaggacggcggtgc	18	12	0	1	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_005468	exon8	c.C1165A	p.L389I	GGGAGAGCTCCAG		33	3	0.09	88	0	0				0	0					T	64820723	G	T	64820723	3	4	125	1	0	0	0	0	1	0	0	0	10176	971	34	2	1101	2	NAALADL1	11	64820723	Missense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10	56698579	64820723	70185793	29	9122											
SIPA1	6494	mdanderson.org	37	chr11	65413325	65413325	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctaacttcctggccacagCggattccacaggcacgcact	8	17	0	0	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_006747	exon6	c.C1160T	p.T387M	CCACAGCGGATTC		41	3	0.07	78	0	0				0	0					T	65413325	C	T	65413325	3	4	125	1	0	0	0	0	1	0	0	0	14382	782	27	1	1178	1	SIPA1	11	65413325	Missense_Mutation	SNP	C	TCGA-XE-AAOL-01A-11D-A435-10	592602	65413325	69593191	30	9123											
CTSW	1521	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	65648922	65648922	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcccacaacctggcccagGctcagaggctgcaggaggag	14	13	1	1	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	CTSW	NM_001335	exon3	c.G217T	p.A73S	GCCCAGGCTCAGA		54	5	0.09	113	0	0		18		1	0	0				T	65648922	G	T	65648922	3	4	125	1	0	0	0	0	1	0	0	0	4066	1203	42	2	227	2	CTSW	11	65648922	Missense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10	235597	65648922	69357594	31	9124											
NAALAD2	10003	mdanderson.org	37	chr11	89924798	89924798	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	cctggaatctatgatgctatCtttgatattgaaaataaagc	7	6	2	3	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_005467	exon19	c.C2106A	p.I702I	TGCTATCTTTGAT		22	2	0.09	40	0	0				3	0	0				A	89924798	C	A	89924798	2	1	125	1	0	0	0	0	0	0	0	1	10175	903	32	3		3	NAALAD2	11	89924798	Silent	SNP	C	TCGA-XE-AAOL-01A-11D-A435-10	24275876	89924798	45081718	32	9125											
CHD4	1108	hgsc.bcm.edu	37	chr12	6711150	6711150	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatcatcatcatcatcctcCtcctcctcctcctccttccg	2	20	4	0	rs150832622	bycluster;by1000genomes	TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001273	exon4	c.G414T	p.E138D	ATCCTCCTCCTCC		94	4	0.04	30	0	0	0.002			4	0	0				A	6711150	C	A	6711150	3	1	125	1	0	0	0	0	1	0	0	0	3349	680	24	3	5472	3	CHD4	12	6711150	Missense_Mutation	SNP	C	TCGA-XE-AAOL-01A-11D-A435-10		6711150	127140745	33	9126											
KRT6B	3854	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	52841624	52841624	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tccacatccagggccagcttGacgttcatcagctcctggta	9	14	2	1	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	KRT6B	NM_005555	exon7	c.C1362T	p.V454V	CAGCTTGACGTTC		217	27	0.12	112	1	0.0089285714		90		0	0					A	52841624	G	A	52841624	2	1	125	1	0	0	0	0	0	0	0	1	8523	1277	45	3		3	KRT6B	12	52841624	Silent	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10	46130474	52841624	81010271	34	9127											
ZNF268	10795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	133779315	133779315	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtttccattcacagcttgTtatacatcagagaattcaca	5	10	3	1	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001165881	exon6	c.T1043C	p.V348A	AGCTTGTTATACA		62	6	0.1	33	0	0				2	2	1				C	133779315	T	C	133779315	3	2	125	1	0	0	0	0	1	0	0	0	17864	1725	60	4		4	ZNF268	12	133779315	Missense_Mutation	SNP	T	TCGA-XE-AAOL-01A-11D-A435-10	80937691	133779315	72580	35	9128											
CLN5	1203	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	77574850	77574851	+	Frame_Shift_Ins	INS	-	-	T													tctgggaaatgaaacatctgINStttttgggccaacaggaaac					novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	CLN5	NM_006493	exon4	c.970_971insT	p.V324fs	ACATCTGTTTTTG		84	23	0.27	119	0	0		32		6	0	0				T	77574851	-	T	77574850	7	5	125	1	0	1	1	0	0	0	0	0	3567	1377	48	0	984	0	CLN5	13	77574850	Frame_Shift_Ins	INS	-	TCGA-XE-AAOL-01A-11D-A435-10		77574850	37595028	36	9129											
CTSG	1511	mdanderson.org	37	chr14	25045411	25045411	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gggtaggagaaaggccagcaGaagcaggagtggctgcatct	17	7	1	2	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001911	exon1	c.C19A	p.L7M	CCAGCAGAAGCAG		43	3	0.07	46	0	0				0	0					T	25045411	G	T	25045411	3	4	125	1	0	0	0	0	1	0	0	0	4059	933	33	3	768	3	CTSG	14	25045411	Missense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10		25045411	82304129	37	9130											
RYR3	6263	mdanderson.org	37	chr15	33926901	33926901	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgcacttttgttggttacGggtataacattgagccatca	10	8	1	1	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	RYR3,extremity,malignant_melanoma,-1,1	RYR3	NM_001243996	exon25	c.G3142T	p.G1048W	GGTTACGGGTATA		49	3	0.06	65	0	0		-1	1	0	0					T	33926901	G	T	33926901	3	4	125	1	0	0	0	0	1	0	0	0	13821	1116	39	1	3240	1	RYR3	15	33926901	Missense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10		33926901	68604491	38	9131											
FES	2242	ucsc.edu	37	chr15	91435302	91435302	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccccaggacaagtgggtgctGaaccatgaggacctggtgtt	14	10	0	2	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	FES	NM_002005	exon13	c.G1668T	p.L556L	GGTGCTGAACCAT		35	4	0.11	36	0	0		102		1	0	0				T	91435302	G	T	91435302	2	4	125	1	0	0	0	0	0	0	0	1	5852	1277	45	3		3	FES	15	91435302	Silent	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10	57508401	91435302	11096090	39	9132											
WDR90	197335	mdanderson.org	37	chr16	705434	705434	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acctggccttcaagcaggccCgggacggctgcccggagccc	14	17	1	0	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_145294	exon15	c.C1684A	p.R562R	CAGGCCCGGGACG		21	2	0.1	22	0	0				0	0					A	705434	C	A	705434	2	1	125	1	0	0	0	0	0	0	0	1	17396	643	23	1		1	WDR90	16	705434	Silent	SNP	C	TCGA-XE-AAOL-01A-11D-A435-10		705434	89649319	40	9133											
IFT140	9742	mdanderson.org	37	chr16	1574816	1574816	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccctggaagcagtggatgCggaccagggagaagtggtcc	17	9	0	1	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	IFT140,NS,carcinoma,-1,1	IFT140	NM_014714	exon23	c.G2966A	p.R989H	TGGATGCGGACCA		47	3	0.06	44	0	0		-1	1	0	0					T	1574816	C	T	1574816	3	4	125	1	0	0	0	0	1	0	0	0	7599	768	27	1	1458	1	IFT140	16	1574816	Missense_Mutation	SNP	C	TCGA-XE-AAOL-01A-11D-A435-10	869382	1574816	88779937	41	9134											
FLYWCH1	84256	ucsc.edu	37	chr16	2983280	2983280	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcacggctgccggagccggGccatcacccagggacagcgg	16	15	1	0	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	FLYWCH1	NM_020912	exon5	c.G943A	p.A315T	AGCCGGGCCATCA		30	4	0.13	29	0	0		27		0	0					A	2983280	G	A	2983280	3	1	125	1	0	0	0	0	1	0	0	0	5979	1203	42	2	953	2	FLYWCH1	16	2983280	Missense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10	1408464	2983280	87371473	42	9135											
SULT1A1	6817	hgsc.bcm.edu	37	chr16	28619841	28619841	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactcaaggaagggcacccGcatgaagatgggagctcggt	15	9	1	2	rs201320226	by1000genomes;alternate_allele	TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	SULT1A1,colon,carcinoma,0,1	SULT1A1	NM_177534	exon2	c.C232A	p.R78R	GCACCCGCATGAA		67	3	0.04	60	0	0		0	1	2	0	0				T	28619841	G	T	28619841	2	4	125	1	0	0	0	0	0	0	0	1	15427	1086	38	1		1	SULT1A1	16	28619841	Silent	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10	25636561	28619841	61734912	43	9136											
ITGAX	3687	mdanderson.org	37	chr16	31367992	31367992	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taacagctgccaaccaaacgGgtggcctctaccagtgtggc	11	13	1	0	rs369769040		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_000887	exon3	c.G190T	p.G64C	CAAACGGGTGGCC		44	3	0.07	34	0	0				2	0	0				T	31367992	G	T	31367992	3	4	125	1	0	0	0	0	1	0	0	0	7932	1232	43	3	200	3	ITGAX	16	31367992	Missense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10	2748151	31367992	58986761	44	9137											
ATP2C2	9914	mdanderson.org	37	chr16	84497330	84497330	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gagtccagatgcaccctgaaGatgtgtagtggaccgcactc	12	11	0	3	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_014861	exon27	c.G2833T	p.D945Y	CCTGAAGATGTGT		73	4	0.05	75	0	0				0	0					T	84497330	G	T	84497330	3	4	125	1	0	0	0	0	1	0	0	0	1143	942	33	3	2939	3	ATP2C2	16	84497330	Missense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10	53129338	84497330	5857423	45	9138											
FAM101B	359845	mdanderson.org	37	chr17	293282	293282	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtacttgaccaaggaggtGtacctgggcgggagacataa	14	8	0	2	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	.	.	.	.	GGAGGTGTACCTG		26	3	0.12	34	0	0				0	0					T	293282	G	T	293282	4	4	125	1	0	0	0	0	0	1	0	0	5412	1372	48	3	330	3	FAM101B	17	293282	Nonsense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10		293282	80901928	46	9139											
OR1G1	8390	mdanderson.org	37	chr17	3030495	3030495	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	acgtagcagtcataggccatGaccgccaagaggaatgcctc	11	12	1	2	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_003555	exon1	c.C351A	p.V117V	GGCCATGACCGCC		32	3	0.09	46	0	0				0	0					T	3030495	G	T	3030495	2	4	125	1	0	0	0	0	0	0	0	1	11004	1277	45	3		3	OR1G1	17	3030495	Silent	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10	2737213	3030495	78164715	47	9140											
TNK1	8711	mdanderson.org	37	chr17	7292338	7292338	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtccagagctgactgctggCgcatcctggagcattaccag	13	12	0	2	rs375240414	alternate_allele	TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001251902	exon13	c.C1936T	p.R646C	TGCTGGCGCATCC		44	3	0.07	68	0	0				2	0	0				T	7292338	C	T	7292338	3	4	125	1	0	0	0	0	1	0	0	0	16376	768	27	1	1967	1	TNK1	17	7292338	Missense_Mutation	SNP	C	TCGA-XE-AAOL-01A-11D-A435-10	4261843	7292338	73902872	48	9141											
TRAPPC1	58485	mdanderson.org	37	chr17	7834370	7834370	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacatctcggatgggtcccaCgcccaagtcagtattcatga	9	13	3	1	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	TRAPPC1,NS,carcinoma,+1,1	TRAPPC1	NM_021210	exon3	c.G268A	p.V90M	GTCCCACGCCCAA		37	3	0.08	61	0	0		1	1	177	0	0				T	7834370	C	T	7834370	3	4	125	1	0	0	0	0	1	0	0	0	16516	536	19	1	177	1	TRAPPC1	17	7834370	Missense_Mutation	SNP	C	TCGA-XE-AAOL-01A-11D-A435-10	542032	7834370	73360840	49	9142											
MAPK7	5598	mdanderson.org	37	chr17	19283106	19283106	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcctcaggccagcaggtgGccatcaagaagatccctaat	10	13	2	2	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_002749	exon3	c.G244A	p.A82T	CAGGTGGCCATCA		19	2	0.11	33	0	0				0	0					A	19283106	G	A	19283106	3	1	125	1	0	0	0	0	1	0	0	0	9331	1203	42	2	250	2	MAPK7	17	19283106	Missense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10	11448736	19283106	61912104	50	9143											
SLC47A2	146802	mdanderson.org	37	chr17	19584743	19584743	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	acaaaggcagcagttgccagGaagacacaggccagcatgcc	12	12	0	1	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_152908	exon15	c.C1437A	p.F479L	TGCCAGGAAGACA		49	3	0.06	85	0	0				0	0					T	19584743	G	T	19584743	3	4	125	1	0	0	0	0	1	0	0	0	14702	1165	41	3	383	3	SLC47A2	17	19584743	Missense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10	301637	19584743	61610467	51	9144											
RUNDC3A	10900	mdanderson.org	37	chr17	42393855	42393855	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactgggaacgcttaatggGgccgagggcgccagcaactc	14	12	1	0	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_006695	exon9	c.G1056T	p.G352G	TAATGGGGCCGAG		29	3	0.1	44	0	0				0	0					T	42393855	G	T	42393855	2	4	125	1	0	0	0	0	0	0	0	1	13795	1219	43	3		3	RUNDC3A	17	42393855	Silent	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10	22809112	42393855	38801355	52	9145											
CDC27	996	hgsc.bcm.edu	37	chr17	45216113	45216113	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggttaacatacctctggcgAatttttatccatgtctgtta	7	8	2	0	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	CDC27_ENST00000531206,caecum,carcinoma,+1,6	CDC27_ENST00000531206	NM_001114091	exon13	c.T1714C	p.S572P	CTGGCGAATTTTT		30	2	0.07	30	1	0.0333333333		1	6	9	0	0				G	45216113	A	G	45216113	3	3	125	1	0	0	0	0	1	0	0	0	3088	246	9	4	806	4	CDC27	17	45216113	Missense_Mutation	SNP	A	TCGA-XE-AAOL-01A-11D-A435-10	2822258	45216113	35979097	53	9146											
PPAN-P2RY11	692312	mdanderson.org	37	chr19	10225090	10225090	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgtgccctaccacatcatGcgggtgctcaacgtggatgc	11	12	2	0	rs368370567	alternate_allele	TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	PPAN-P2RY11,colon,carcinoma,+2,2	PPAN-P2RY11	NM_001040664	exon13	c.G2061T	p.M687I	CATCATGCGGGTG		40	3	0.08	22	0	0		2	2	15	0	0				T	10225090	G	T	10225090	3	4	125	1	0	0	0	0	1	0	0	0	12333	1319	46	2		2	PPAN-P2RY11	19	10225090	Missense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10		10225090	48903893	54	9147											
OCEL1	79629	mdanderson.org	37	chr19	17337509	17337509	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtccacccacaggccgcccGcagaccacccccgccgcgcg	10	23	0	1	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_024578	exon2	c.G77A	p.R26H	CCGCCCGCAGACC		19	2	0.11	9	0	0				1	0	0				A	17337509	G	A	17337509	3	1	125	1	0	0	0	0	1	0	0	0	10863	1087	38	1	83	1	OCEL1	19	17337509	Missense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10	7112419	17337509	41791474	55	9148											
CAPNS1	826	broad.mit.edu	37	chr19	36632054	36632054	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcggcggcggcggcggCggtggtggaggcggcggtgg	28	9	0	0	rs17879825		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	CAPNS1	NM_001749	exon2	c.C141T	p.G47G	CGGCGGCGGTGGT		103	10	0.1	120	2	0.0166666667		19		1	1	1				T	36632054	C	T	36632054	2	4	125	1	0	0	0	0	0	0	0	1	2651	755	27	1		1	CAPNS1	19	36632054	Silent	SNP	C	TCGA-XE-AAOL-01A-11D-A435-10	19294545	36632054	22496929	56	9149											
CNOT3	4849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	54651887	54651887	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctctcccacccgcagtctcCagccaaaaacggctccaagc	6	19	2	0	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_014516	exon11	c.C899T	p.P300L	AGTCTCCAGCCAA		158	30	0.19	115	0	0				7	2	0.29				T	54651887	C	T	54651887	3	4	125	1	0	0	0	0	1	0	0	0	3643	594	21	3	937	3	CNOT3	19	54651887	Missense_Mutation	SNP	C	TCGA-XE-AAOL-01A-11D-A435-10	18019833	54651887	4477096	57	9150											
NSFL1C	55968	mdanderson.org	37	chr20	1424434	1424434	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacagcattgagcaggttgGcttccttcagggtctggctc	13	10	2	2	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_016143	exon9	c.C1073A	p.A358D	AGGTTGGCTTCCT		45	3	0.07	41	0	0				112	0	0				T	1424434	G	T	1424434	3	4	125	1	0	0	0	0	1	0	0	0	10719	1203	42	2	43	2	NSFL1C	20	1424434	Missense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10		1424434	61601086	58	9151											
BAGE	85319	broad.mit.edu	37	chr21	11058613	11058614	+	RNA	INS	-	-	A													aaacctaaagatttttttttINSaaagcaaatagtaatatggt					rs377480117	bycluster	TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	.	.	.	.	TTTTTTTAAAGCA		7	3	0.43	10	0	0				0	0					A	11058614	-	A	11058613	6	5	125	0	1	1	1	0	0	0	0	0	1289	1769	61	0		0	BAGE	21	11058613	RNA	INS	-	TCGA-XE-AAOL-01A-11D-A435-10		11058613	37071282	59	9152											
DYRK1A	1859	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	38884387	38884387	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catcaccaccaccaccaccaTcaccaccaccatggacaaca	2	21	2	0	rs372827991		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	DYRK1A	NM_001396	exon11	c.T1845C	p.H615H	CCACCATCACCAC		204	40	0.2	97	1	0.0103092784		85		7	1	0.14				C	38884387	T	C	38884387	2	2	125	1	0	0	0	0	0	0	0	1	4880	1432	50	4		4	DYRK1A	21	38884387	Silent	SNP	T	TCGA-XE-AAOL-01A-11D-A435-10	27825774	38884387	9245508	60	9153											
LSS	4047	hgsc.bcm.edu;mdanderson.org	37	chr21	47642636	47642636	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agagggatgcgtgccacgtgGcaagtgatcaggaggcctgt	17	8	1	2	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001145436	exon4	c.C336A	p.C112X	CACGTGGCAAGTG		66	6	0.09	27	0	0				0	0					T	47642636	G	T	47642636	4	4	125	1	0	0	0	0	0	1	0	0	9109	1195	42	2	1938	2	LSS	21	47642636	Nonsense_Mutation	SNP	G	TCGA-XE-AAOL-01A-11D-A435-10	8758249	47642636	487259	61	9154											
RNF207	388591	mdanderson.org	37	chr1	6266729	6266729	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactgtttccacgacttctGtgccggctgcctgcgtggcc	13	14	1	0	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_207396	exon2	c.G134T	p.C45F	ACTTCTGTGCCGG		33	3	0.09	29	0	0				3	0	0				T	6266729	G	T	6266729	3	4	126	1	0	0	0	0	1	0	0	0	13525	1377	48	3	136	3	RNF207	1	6266729	Missense_Mutation	SNP	G	TCGA-XY-A89B-01A-11D-A435-10		6266729	242983892	1	9155											
ATP13A2	23400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	17318882	17318882	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggtggaggacgctgactgGcaccgggggctcctcctgca	17	13	0	1	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_022089	exon18	c.C1861T	p.P621S	TGACTGGCACCGG		80	8	0.1	78	0	0				183	42	0.23				A	17318882	G	A	17318882	3	1	126	1	0	0	0	0	1	0	0	0	1123	1203	42	2	1965	2	ATP13A2	1	17318882	Missense_Mutation	SNP	G	TCGA-XY-A89B-01A-11D-A435-10	11052153	17318882	231931739	2	9156											
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	21299496	21299496	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtaataaaaatctcttacaGtttttttctctctcttggct	4	8	3	0	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001198803	exon11	c.C455T	p.T152I	CTTACAGTTTTTT		69	13	0.19	64	0	0				61	18	0.3				A	21299496	G	A	21299496	3	1	126	1	0	0	0	0	1	0	0	0	5066	1043	36	3	4443	3	EIF4G3	1	21299496	Missense_Mutation	SNP	G	TCGA-XY-A89B-01A-11D-A435-10	3980614	21299496	227951125	3	9157											
EPHB2	2048	mdanderson.org	37	chr1	23111394	23111394	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcttccaggaaaccctgtcGggggctgagagcacatcgct	12	12	1	1	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	EPHB2,NS,NS,0,1	EPHB2	NM_004442	exon3	c.G636T	p.S212S	CCTGTCGGGGGCT		55	3	0.05	73	0	0		0	1	13	0	0				T	23111394	G	T	23111394	2	4	126	1	0	0	0	0	0	0	0	1	5203	1103	39	1		1	EPHB2	1	23111394	Silent	SNP	G	TCGA-XY-A89B-01A-11D-A435-10	1811898	23111394	226139227	4	9158											
RAB42	115273	hgsc.bcm.edu;bcgsc.ca	37	chr1	28920547	28920547	+	Frame_Shift_Del	DEL	G	G	-													catcaagctagaagagggctGggggggtgtccggctcatcc					novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.,1	.	NM_001193532	exon2	c.574delT	p.W192fs	AGGGCTGGGGGGG		69	13	0.19	76	0	0		10	1	44	0	0				-	28920547	G	-	28920547	7	5	126	1	0	1	0	1	0	0	0	0	12995	1357	47	0	238	0	RAB42	1	28920547	Frame_Shift_Del	DEL	G	TCGA-XY-A89B-01A-11D-A435-10	5809153	28920547	220330074	5	9159											
GUCA2B	2981	mdanderson.org	37	chr1	42619175	42619175	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagtggccgtggtcctcctGctgctgctgcagagcacaca	14	13	0	1	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_007102	exon1	c.G54C	p.L18L	CCTCCTGCTGCTG		37	3	0.08	29	0	0				0	0					C	42619175	G	C	42619175	2	2	126	1	0	0	0	0	0	0	0	1	6932	1306	46	5		5	GUCA2B	1	42619175	Silent	SNP	G	TCGA-XY-A89B-01A-11D-A435-10	13698628	42619175	206631446	6	9160											
USP1	7398	broad.mit.edu;mdanderson.org	37	chr1	62916589	62916589	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagagaaggactttctgaaTtctctttccccttctacatc	6	11	3	2	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	USP1	NM_001017415	exon9	c.T2295G	p.N765K	TCTGAATTCTCTT		53	6	0.11	43	0	0		51		186	60	0.32				G	62916589	T	G	62916589	3	3	126	1	0	0	0	0	1	0	0	0	17099	1490	52	4	2325	4	USP1	1	62916589	Missense_Mutation	SNP	T	TCGA-XY-A89B-01A-11D-A435-10	20297414	62916589	186334032	7	9161											
NRAS	4893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	115256529	115256529	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatggcactgtactcttctTgtccagctgtatccagtatg	8	11	3	0	rs11554290	bycluster;byfrequency;byhapmap	TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	NRAS,NS,haematopoietic_neoplasm,-1,2068	NRAS	NM_002524	exon3	c.A182G	p.Q61R	TCTTCTTGTCCAG		101	18	0.18	97	0	0		-1	2068	156	50	0.32				C	115256529	T	C	115256529	3	2	126	1	0	0	0	0	1	0	0	0	10687	1812	63	4	399	4	NRAS	1	115256529	Missense_Mutation	SNP	T	TCGA-XY-A89B-01A-11D-A435-10	52339940	115256529	133994092	8	9162											
IVL	3713	broad.mit.edu	37	chr1	152883337	152883337	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaggaggggcagctggagcAcctggagcaccaggaagggc	19	10	0	0	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	IVL	NM_005547	exon2	c.A1064G	p.H355R	TGGAGCACCTGGA		79	4	0.05	97	1	0.0103092784		100		0	0					G	152883337	A	G	152883337	3	3	126	1	0	0	0	0	1	0	0	0	7972	159	6	4	1066	4	IVL	1	152883337	Missense_Mutation	SNP	A	TCGA-XY-A89B-01A-11D-A435-10	37626808	152883337	96367284	9	9163											
FMN2	56776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	240371435	240371435	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctacccggagtgggcatacCtcctccgccccctctacccg	8	20	2	0	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	FMN2,NS,carcinoma,-1,2	FMN2	NM_020066	exon5	c.C3323T	p.P1108L	GCATACCTCCTCC		71	18	0.25	77	0	0		-1	2	8	5	0.63				T	240371435	C	T	240371435	3	4	126	1	0	0	0	0	1	0	0	0	5982	681	24	3	3341	3	FMN2	1	240371435	Missense_Mutation	SNP	C	TCGA-XY-A89B-01A-11D-A435-10	87488098	240371435	8879186	10	9164											
ITGA4	3676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	182400167	182400167	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgctattttcaggctggcttCtttaaaagacaatacaaatc	6	8	2	1	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	ITGA4,NS,carcinoma,0,1	ITGA4	NM_000885	exon28	c.C3012T	p.F1004F	TGGCTTCTTTAAA		269	34	0.13	237	0	0		0	1	75	0	0				T	182400167	C	T	182400167	2	4	126	1	0	0	0	0	0	0	0	1	7921	912	32	3		3	ITGA4	2	182400167	Silent	SNP	C	TCGA-XY-A89B-01A-11D-A435-10		182400167	60799206	11	9165											
KLHL30	377007	mdanderson.org	37	chr2	239050003	239050003	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actcgaggccctgatgcgctGggtgcgccatgacccgcagg	15	14	0	2	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_198582	exon2	c.G608T	p.W203L	TGCGCTGGGTGCG		18	3	0.17	22	0	0				0	0					T	239050003	G	T	239050003	3	4	126	1	0	0	0	0	1	0	0	0	8426	1357	47	3	610	3	KLHL30	2	239050003	Missense_Mutation	SNP	G	TCGA-XY-A89B-01A-11D-A435-10	56649836	239050003	4149370	12	9166											
P4HTM	54681	broad.mit.edu	37	chr3	49042374	49042374	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcgatatggtgagggggGccactaccatgcccacgtgg	15	10	0	1	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	P4HTM	NM_177938	exon6	c.G968T	p.G323V	AGGGGGGCCACTA		47	3	0.06	54	0	0		71		23	0	0				T	49042374	G	T	49042374	3	4	126	1	0	0	0	0	1	0	0	0	11406	1203	42	2	990	2	P4HTM	3	49042374	Missense_Mutation	SNP	G	TCGA-XY-A89B-01A-11D-A435-10		49042374	148980056	13	9167											
RBM15B	29890	mdanderson.org	37	chr3	51429280	51429280	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagcttgagccccgcgctGcccgccgagcacctcgagga	13	17	0	1	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_013286	exon1	c.G450T	p.L150L	CGCGCTGCCCGCC		16	3	0.19	19	0	0				36	0	0				T	51429280	G	T	51429280	2	4	126	1	0	0	0	0	0	0	0	1	13168	1306	46	2		2	RBM15B	3	51429280	Silent	SNP	G	TCGA-XY-A89B-01A-11D-A435-10	2386906	51429280	146593150	14	9168											
TBCCD1	55171	mdanderson.org	37	chr3	186272317	186272317	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catatggtcctctagcattgGgtaatgtgtatgaaaagggg	13	5	1	1	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001134415	exon6	c.C1270A	p.P424T	GCATTGGGTAATG		56	3	0.05	78	0	0				78	0	0				T	186272317	G	T	186272317	3	4	126	1	0	0	0	0	1	0	0	0	15691	1232	43	3	411	3	TBCCD1	3	186272317	Missense_Mutation	SNP	G	TCGA-XY-A89B-01A-11D-A435-10	134843037	186272317	11750113	15	9169											
MFSD10	10227	mdanderson.org	37	chr4	2932979	2932979	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcgaccacggaggacagGcagggcaccacaacggcggc	15	15	0	0	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001146069	exon11	c.C1137A	p.C379X	GGACAGGCAGGGC		40	3	0.08	53	0	0				109	0	0				T	2932979	G	T	2932979	4	4	126	1	0	0	0	0	0	1	0	0	9577	1195	42	2	242	2	MFSD10	4	2932979	Nonsense_Mutation	SNP	G	TCGA-XY-A89B-01A-11D-A435-10		2932979	188221297	16	9170											
BTC	685	mdanderson.org	37	chr4	75719476	75719476	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcacggccacttacccagGgcaagggccaggagcagtgg	15	13	0	0	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001729	exon1	c.C60A	p.A20A	ACCCAGGGCAAGG		31	3	0.1	42	0	0				0	0					T	75719476	G	T	75719476	2	4	126	1	0	0	0	0	0	0	0	1	1552	1219	43	3		3	BTC	4	75719476	Silent	SNP	G	TCGA-XY-A89B-01A-11D-A435-10	72786497	75719476	115434800	17	9171											
FAM198B	51313	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	159092431	159092431	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cagaaggtttctccgggtccTtggacgccggctgctccaga	13	13	1	2	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_016613	exon2	c.A97T	p.R33W	GGGTCCTTGGACG		83	7	0.08	109	0	0				21	0	0				A	159092431	T	A	159092431	3	1	126	1	0	0	0	0	1	0	0	0	5560	1608	56	5	1583	5	FAM198B	4	159092431	Missense_Mutation	SNP	T	TCGA-XY-A89B-01A-11D-A435-10	83372955	159092431	32061845	18	9172											
ADCY2	108	broad.mit.edu;mdanderson.org	37	chr5	7396571	7396571	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcttcctgctgctcatcgtCatgggctcctgcctcgccct	9	17	3	0	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	ADCY2	NM_020546	exon1	c.C162A	p.V54V	CATCGTCATGGGC		59	11	0.19	75	2	0.0266666667		337		0	0					A	7396571	C	A	7396571	2	1	126	1	0	0	0	0	0	0	0	1	293	813	29	3		3	ADCY2	5	7396571	Silent	SNP	C	TCGA-XY-A89B-01A-11D-A435-10		7396571	173518689	19	9173											
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	118469192	118469192	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgctttcttgattctaggtgTcctttgtttccagaattcca	7	9	2	2	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_005509	exon12	c.T1573A	p.S525T	TAGGTGTCCTTTG		81	15	0.19	85	0	0				22	7	0.32				A	118469192	T	A	118469192	3	1	126	1	0	0	0	0	1	0	0	0	4622	1667	58	5	1619	5	DMXL1	5	118469192	Missense_Mutation	SNP	T	TCGA-XY-A89B-01A-11D-A435-10	111072621	118469192	62446068	20	9174											
SYCP2L	221711	mdanderson.org	37	chr6	10928665	10928665	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtccctccgttcggggtcccTgacttcccgcaacaacctgt	9	17	0	1	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001040274	exon18	c.T1470C	p.P490P	GGTCCCTGACTTC		48	3	0.06	25	0	0				23	0	0				C	10928665	T	C	10928665	2	2	126	1	0	0	0	0	0	0	0	1	15489	1567	55	4		4	SYCP2L	6	10928665	Silent	SNP	T	TCGA-XY-A89B-01A-11D-A435-10		10928665	160186402	21	9175											
NFKBIL1	4795	mdanderson.org	37	chr6	31525456	31525456	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgctgtccctccgccatggGaataaagaataaggatgggg	13	10	0	1	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001144961	exon3	c.G386T	p.G129V	CCATGGGAATAAA		70	4	0.06	72	0	0				79	0	0				T	31525456	G	T	31525456	3	4	126	1	0	0	0	0	1	0	0	0	10427	1174	41	3	396	3	NFKBIL1	6	31525456	Missense_Mutation	SNP	G	TCGA-XY-A89B-01A-11D-A435-10	20596791	31525456	139589611	22	9176											
GRM4	2914	broad.mit.edu	37	chr6	34101114	34101114	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggccatgcaccgggaacaGgcctcccagtgtgatgtccc	12	16	0	1	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	GRM4	NM_001256811	exon2	c.C160A	p.L54M	GGAACAGGCCTCC		64	3	0.05	72	0	0		317		0	0					T	34101114	G	T	34101114	3	4	126	1	0	0	0	0	1	0	0	0	6839	991	35	3	2618	3	GRM4	6	34101114	Missense_Mutation	SNP	G	TCGA-XY-A89B-01A-11D-A435-10	2575658	34101114	137013953	23	9177											
PHKG1	5260	mdanderson.org	37	chr7	56148891	56148891	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	atgagccggcgcagaggccgGagggcataggggtctcggat	19	9	1	2	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001258459	exon11	c.C1116A	p.L372L	AGGCCGGAGGGCA		44	3	0.07	46	0	0				1	0	0				T	56148891	G	T	56148891	2	4	126	1	0	0	0	0	0	0	0	1	11893	1161	41	3		3	PHKG1	7	56148891	Silent	SNP	G	TCGA-XY-A89B-01A-11D-A435-10		56148891	102989772	24	9178											
HIP1	3092	mdanderson.org	37	chr7	75368221	75368221	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgggcacctgcttcatggaGctggccatccgatccatgtc	11	13	1	0	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001243198	exon1	c.C18A	p.S6R	CATGGAGCTGGCC		45	4	0.09	30	0	0				2	0	0				T	75368221	G	T	75368221	3	4	126	1	0	0	0	0	1	0	0	0	7154	962	34	2	3219	2	HIP1	7	75368221	Missense_Mutation	SNP	G	TCGA-XY-A89B-01A-11D-A435-10	19219330	75368221	83770442	25	9179											
ZAN	7455	broad.mit.edu	37	chr7	100336500	100336502	+	RNA	DEL	CCC	CCC	-													tctcttcctcttcttcttctCcctctccctctccctctccc					novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	CCC	CCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	ZAN	.	.	.	.	TCTTCTCCCTCTC		8	5	0.63	4	0	0		658		0	0					-	100336502	CCC	-	100336500	6	5	126	0	1	1	0	1	0	0	0	0	17572	870	30	0		0	ZAN	7	100336500	RNA	DEL	CCC	TCGA-XY-A89B-01A-11D-A435-10	24968279	100336500	58802163	26	9180											
AP1S1	1174	bcgsc.ca;mdanderson.org	37	chr7	100799986	100799986	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcgcgagctcatgcaggttGtcctggctcgaaagcccaag	13	12	1	0	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	AP1S1	NM_001283	exon2	c.G115A	p.V39I	CAGGTTGTCCTGG		64	12	0.19	70	0	0		22		124	18	0.15				A	100799986	G	A	100799986	3	1	126	1	0	0	0	0	1	0	0	0	732	1377	48	3	121	3	AP1S1	7	100799986	Missense_Mutation	SNP	G	TCGA-XY-A89B-01A-11D-A435-10	463486	100799986	58338677	27	9181											
ARFGEF1	10565	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	68128855	68128855	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacttacaggagatggaggTgggggggcagtttctccaga	16	7	2	2	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	ARFGEF1	NM_006421	exon33	c.A4656T	p.P1552P	TGGAGGTGGGGGG		243	28	0.12	211	3	0.0142180095		196		333	76	0.23				A	68128855	T	A	68128855	2	1	126	1	0	0	0	0	0	0	0	1	849	1683	59	5		5	ARFGEF1	8	68128855	Silent	SNP	T	TCGA-XY-A89B-01A-11D-A435-10		68128855	78235167	28	9182											
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	114132781	114132781	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctctttggtggccttcaaGatatcagctgcacagctgat	9	11	3	2	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001080398	exon46	c.C5442T	p.I1814I	CTTCAAGATATCA		112	12	0.11	88	0	0				688	181	0.26				A	114132781	G	A	114132781	2	1	126	1	0	0	0	0	0	0	0	1	8212	932	33	3		3	KIAA0368	9	114132781	Silent	SNP	G	TCGA-XY-A89B-01A-11D-A435-10		114132781	27080650	29	9183											
ENG	2022	mdanderson.org	37	chr9	130588924	130588924	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtggtgttgacccccggggGctcttggaaggtgaccaggc	17	10	1	2	rs199840979	bycluster;byfrequency	TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_000118	exon4	c.C388T	p.P130S	CCGGGGGCTCTTG		39	4	0.1	49	0	0	0.002			167	0	0				A	130588924	G	A	130588924	3	1	126	1	0	0	0	0	1	0	0	0	5145	1203	42	2	1662	2	ENG	9	130588924	Missense_Mutation	SNP	G	TCGA-XY-A89B-01A-11D-A435-10	16456143	130588924	10624507	30	9184											
WAC	51322	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	28822948	28822948	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtcacgaccggaggggggaCtcgcagccttaccaggtacc	14	13	1	0	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	WAC	NM_100486	exon2	c.C63G	p.D21E	GGGGGACTCGCAG		134	26	0.19	152	2	0.0131578947		77		224	54	0.24				G	28822948	C	G	28822948	3	3	126	1	0	0	0	0	1	0	0	0	17306	564	20	5	69	5	WAC	10	28822948	Missense_Mutation	SNP	C	TCGA-XY-A89B-01A-11D-A435-10		28822948	106711799	31	9185											
FZD8	8325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	35930262	35930262	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgatctcttggcatgccagCtccttggccgaggcggccgc	14	14	1	1	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_031866	exon1	c.G96C	p.E32D	TGCCAGCTCCTTG		41	11	0.27	51	0	0				42	27	0.64				G	35930262	C	G	35930262	3	3	126	1	0	0	0	0	1	0	0	0	6170	796	28	5	1992	5	FZD8	10	35930262	Missense_Mutation	SNP	C	TCGA-XY-A89B-01A-11D-A435-10	7107314	35930262	99604485	32	9186											
DGKZ	8525	mdanderson.org	37	chr11	46387955	46387955	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctcactggcacagcggcGccgctccagcgcccagctcc	10	21	1	0	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001105540	exon2	c.G149T	p.R50L	AGCGGCGCCGCTC		22	2	0.09	22	0	0				14	0	0				T	46387955	G	T	46387955	3	4	126	1	0	0	0	0	1	0	0	0	4502	1087	38	1	595	1	DGKZ	11	46387955	Missense_Mutation	SNP	G	TCGA-XY-A89B-01A-11D-A435-10		46387955	88618561	33	9187											
AMBRA1	55626	mdanderson.org	37	chr11	46419165	46419165	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagagggcagggttggctgGgttggctcccgcccaggggt	20	9	0	1	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001267782	exon20	c.C3741A	p.T1247T	TGGCTGGGTTGGC		42	3	0.07	45	0	0				93	0	0				T	46419165	G	T	46419165	2	4	126	1	0	0	0	0	0	0	0	1	561	1219	43	3		3	AMBRA1	11	46419165	Silent	SNP	G	TCGA-XY-A89B-01A-11D-A435-10	31210	46419165	88587351	34	9188											
VWCE	220001	mdanderson.org	37	chr11	61048319	61048319	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcgactccttgattcatgCatggctcccaggtgccagca	10	14	1	1	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_152718	exon8	c.G1176A	p.M392I	TTCATGCATGGCT		33	3	0.09	46	0	0				13	0	0				T	61048319	C	T	61048319	3	4	126	1	0	0	0	0	1	0	0	0	17304	710	25	2	1743	2	VWCE	11	61048319	Missense_Mutation	SNP	C	TCGA-XY-A89B-01A-11D-A435-10	14629154	61048319	73958197	35	9189											
RBM4	5936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	66411186	66411186	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctactacaagcgctgccgTgctgcccggtcctatgaggc	12	15	0	1	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_002896	exon3	c.T678A	p.R226R	CTGCCGTGCTGCC		51	11	0.22	51	0	0				261	93	0.36				A	66411186	T	A	66411186	2	1	126	1	0	0	0	0	0	0	0	1	13185	1683	59	5		5	RBM4	11	66411186	Silent	SNP	T	TCGA-XY-A89B-01A-11D-A435-10	5362867	66411186	68595330	36	9190											
KDM2A	22992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	67022423	67022423	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgatcgaccttcgaggatGcaagcagatcactcgaaaag	10	10	1	2	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_012308	exon21	c.G3386A	p.C1129Y	GAGGATGCAAGCA		64	9	0.14	99	0	0				253	65	0.26				A	67022423	G	A	67022423	3	1	126	1	0	0	0	0	1	0	0	0	8167	1319	46	2	3464	2	KDM2A	11	67022423	Missense_Mutation	SNP	G	TCGA-XY-A89B-01A-11D-A435-10	611237	67022423	67984093	37	9191											
APLP2	334	mdanderson.org	37	chr11	130013286	130013286	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcgtcacctgaacaagatGcagaaccatggctatgagaa	11	9	1	4	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001642	exon18	c.G2235T	p.M745I	CAAGATGCAGAAC		36	3	0.08	54	0	0				940	0	0				T	130013286	G	T	130013286	3	4	126	1	0	0	0	0	1	0	0	0	776	1319	46	2	2305	2	APLP2	11	130013286	Missense_Mutation	SNP	G	TCGA-XY-A89B-01A-11D-A435-10	62990863	130013286	4993230	38	9192											
PRB3	5544	broad.mit.edu	37	chr12	11420721	11420721	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcccggacgaggcgggggAccttgggactggtttcctcc	15	12	0	0	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	PRB3	NM_006249	exon3	c.T462C	p.G154G	CGGGGGACCTTGG		199	24	0.12	136	14	0.1029411765		84		0	0					G	11420721	A	G	11420721	1	3	126	0	1	0	0	0	0	0	0	0	12495	262	10	4		4	PRB3	12	11420721	RNA	SNP	A	TCGA-XY-A89B-01A-11D-A435-10		11420721	122431174	39	9193											
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	26636703	26636703	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tggttgaccagcgctacattCttctcattgatgtagagacc	9	10	2	3	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	ITPR2,NS,carcinoma,-1,1	ITPR2	NM_002223	exon42	c.G5940A	p.K1980K	TACATTCTTCTCA		253	27	0.11	185	1	0.0054054054		-1	1	38	0	0				T	26636703	C	T	26636703	2	4	126	1	0	0	0	0	0	0	0	1	7964	912	32	3		3	ITPR2	12	26636703	Silent	SNP	C	TCGA-XY-A89B-01A-11D-A435-10	15215982	26636703	107215192	40	9194											
HOXC13	3229	mdanderson.org	37	chr12	54333053	54333053	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagcgccaccctgggctaCggctaccccttcgggggcag	13	17	0	0	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_017410	exon1	c.C363T	p.Y121Y	GGGCTACGGCTAC		42	4	0.1	34	0	0				0	0					T	54333053	C	T	54333053	2	4	126	1	0	0	0	0	0	0	0	1	7352	547	19	1		1	HOXC13	12	54333053	Silent	SNP	C	TCGA-XY-A89B-01A-11D-A435-10	27696350	54333053	79518842	41	9195											
POLE	5426	mdanderson.org	37	chr12	133209345	133209345	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggagcactgcgcctcagcCcgtccttcatgcagtggtac	11	15	2	0	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	POLE_ENST00000320574,right_lower_lobe,carcinoma,+1,2	POLE_ENST00000320574	NM_006231	exon44	c.G6041T	p.G2014V	CTCAGCCCGTCCT		23	4	0.17	25	0	0		1	2	177	0	0				A	133209345	C	A	133209345	3	1	126	1	0	0	0	0	1	0	0	0	12243	623	22	3	843	3	POLE	12	133209345	Missense_Mutation	SNP	C	TCGA-XY-A89B-01A-11D-A435-10	78876292	133209345	642550	42	9196											
CMTM5	116173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	23847656	23847656	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	atcacacttgccttcctcttCctctatgccacccagtacta	3	17	3	0	rs371218018		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_138460	exon2	c.C225T	p.F75F	CCTCTTCCTCTAT		144	26	0.18	135	0	0				0	0					T	23847656	C	T	23847656	2	4	126	1	0	0	0	0	0	0	0	1	3609	854	30	3		3	CMTM5	14	23847656	Silent	SNP	C	TCGA-XY-A89B-01A-11D-A435-10		23847656	83501884	43	9197											
PSMA6	5687	broad.mit.edu	37	chr14	35782215	35782216	+	Frame_Shift_Ins	INS	-	-	A													tgagtcaaccagcttccttgINSaaaaaaaagtgaagaagaaa					novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	PSMA6	NM_002791	exon5	c.538_539insA	p.E180fs	TTCCTTGAAAAAA		100	8	0.08	115	0	0		18		850	0	0				A	35782216	-	A	35782215	7	5	126	1	0	1	1	0	0	0	0	0	12719	1291	45	0	556	0	PSMA6	14	35782215	Frame_Shift_Ins	INS	-	TCGA-XY-A89B-01A-11D-A435-10	11934559	35782215	71567325	44	9198											
CHRM5	0	broad.mit.edu	37	chr15	34355354	34355354	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggccaagcgtactccgaaaAgggctggcatcatgattggc	14	10	1	1	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	CHRM5	NM_012125	exon3	c.A436G	p.R146G	CCGAAAAGGGCTG		111	3	0.03	95	0	0		59		0	0					G	34355354	A	G	34355354	3	3	126	1	0	0	0	0	1	0	0	0	3402	63	3	4	438	4	CHRM5	15	34355354	Missense_Mutation	SNP	A	TCGA-XY-A89B-01A-11D-A435-10		34355354	68176038	45	9199											
RORA	6095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	60849111	60849111	+	Missense_Mutation	SNP	T	T	A													gtgaatatggtggcttgccaTtctgcctccaggaacacttg					novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_134260	exon3	c.A236T	p.N79I	TTGCCATTCTGCC		176	17	0.1	150	0	0				0	0					A	60849111	T	A	60849111	3	1	126	1	0	0	0	0	1	0	0	0	13579	1493	52	5	1474	5	RORA	15	60849111	Missense_Mutation	SNP	T	TCGA-XY-A89B-01A-11D-A435-10	26493757	60849111	41682281	46	9200	20	2									
RORA	6095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	60849113	60849113	+	Silent	SNP	C	C	T													gaatatggtggcttgccattCtgcctccaggaacacttgtt					novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_134260	exon3	c.G234A	p.Q78Q	GCCATTCTGCCTC		178	18	0.1	151	0	0				0	0					T	60849113	C	T	60849113	2	4	126	1	0	0	0	0	0	0	0	1	13579	912	32	3		3	RORA	15	60849113	Silent	SNP	C	TCGA-XY-A89B-01A-11D-A435-10	2	60849113	41682279	47	9201	20	2									
IL27	246778	broad.mit.edu	37	chr16	28511197	28511197	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctcctcctcTtcctcctcctcctcctccgg	2	25	1	0	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	IL27	NM_145659	exon5	c.A507G	p.E169E	CTCCTCTTCCTCC		35	3	0.09	42	1	0.0238095238		27		4	0	0				C	28511197	T	C	28511197	2	2	126	1	0	0	0	0	0	0	0	1	7723	1606	56	4		4	IL27	16	28511197	Silent	SNP	T	TCGA-XY-A89B-01A-11D-A435-10		28511197	61843556	48	9202											
SETD6	79918	mdanderson.org	37	chr16	58549762	58549762	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgagctggtgccggcgggTggggctggagctgagtccca	19	11	0	2	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_024860	exon2	c.T95G	p.V32G	GGCGGGTGGGGCT		13	4	0.31	10	1	0.1				22	1	0.05				G	58549762	T	G	58549762	3	3	126	1	0	0	0	0	1	0	0	0	14188	1696	59	4	101	4	SETD6	16	58549762	Missense_Mutation	SNP	T	TCGA-XY-A89B-01A-11D-A435-10	30038565	58549762	31804991	49	9203											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	7574027	7574027	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	catctcgaagcgctcacgccCacggatctgcagcaacagag	10	15	3	1	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	TP53_ENST00000269305,NS,carcinoma,0,16	TP53_ENST00000269305	NM_000546	exon10	c.G1000T	p.G334W	CACGCCCACGGAT		76	10	0.13	106	0	0		0	16	124	35	0.28				A	7574027	C	A	7574027	3	1	126	1	0	0	0	0	1	0	0	0	16441	594	21	3	189	3	TP53	17	7574027	Missense_Mutation	SNP	C	TCGA-XY-A89B-01A-11D-A435-10		7574027	73621183	50	9204											
EFNB3	1949	mdanderson.org	37	chr17	7612495	7612495	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccctgccaggtgaccccacCagcaatgcaacctcccgggg	10	18	0	1	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001406	exon5	c.C624T	p.T208T	CCCCACCAGCAAT		16	2	0.13	18	0	0				19	8	0.42				T	7612495	C	T	7612495	2	4	126	1	0	0	0	0	0	0	0	1	4983	581	21	3		3	EFNB3	17	7612495	Silent	SNP	C	TCGA-XY-A89B-01A-11D-A435-10	38468	7612495	73582715	51	9205											
PSMD11	5717	broad.mit.edu	37	chr17	30771555	30771555	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggtaagatggcggcggcggCggtggtggagttccagagag	21	7	0	2	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	PSMD11	NM_002815	exon1	c.C14T	p.A5V	CGGCGGCGGTGGT		160	5	0.03	133	0	0		41		116	0	0				T	30771555	C	T	30771555	3	4	126	1	0	0	0	0	1	0	0	0	12742	768	27	1	16	1	PSMD11	17	30771555	Missense_Mutation	SNP	C	TCGA-XY-A89B-01A-11D-A435-10	23159060	30771555	50423655	52	9206											
ERBB2	2064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	37879626	37879626	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	attctgctggtcgtggtcttGggggtggtctttgggatcct	16	7	3	0	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_004448	exon17	c.G2001C	p.L667F	GGTCTTGGGGGTG		84	17	0.2	109	0	0				49	18	0.37				C	37879626	G	C	37879626	3	2	126	1	0	0	0	0	1	0	0	0	5234	1339	47	5	2067	5	ERBB2	17	37879626	Missense_Mutation	SNP	G	TCGA-XY-A89B-01A-11D-A435-10	7108071	37879626	43315584	53	9207											
KRT9	3857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	39727976	39727976	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aacctctggaaccacccccaAagccaccgcctaaactactg	5	18	1	0	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_000226	exon1	c.T269C	p.F90S	CCCCCAAAGCCAC		136	21	0.15	145	0	0				0	0					G	39727976	A	G	39727976	3	3	126	1	0	0	0	0	1	0	0	0	8543	14	1	4	1630	4	KRT9	17	39727976	Missense_Mutation	SNP	A	TCGA-XY-A89B-01A-11D-A435-10	1848350	39727976	41467234	54	9208											
BSG	682	mdanderson.org	37	chr19	577976	577976	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acctaccaccagcacgcggcCagcaccatctccatcgacac	6	20	1	0	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001728	exon2	c.C270A	p.A90A	CGCGGCCAGCACC		41	3	0.07	62	0	0				8	0	0				A	577976	C	A	577976	2	1	126	1	0	0	0	0	0	0	0	1	1531	581	21	3		3	BSG	19	577976	Silent	SNP	C	TCGA-XY-A89B-01A-11D-A435-10		577976	58551007	55	9209											
EMR1	2015	mdanderson.org	37	chr19	6937381	6937381	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatcatcaacagcctgcagGgggccttcatcttcctcatc	7	16	5	0	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001974	exon19	c.G2509T	p.G837W	CTGCAGGGGGCCT		55	3	0.05	70	0	0				19	0	0				T	6937381	G	T	6937381	3	4	126	1	0	0	0	0	1	0	0	0	5132	1232	43	3	2583	3	EMR1	19	6937381	Missense_Mutation	SNP	G	TCGA-XY-A89B-01A-11D-A435-10	6359405	6937381	52191602	56	9210											
PEX11G	92960	mdanderson.org	37	chr19	7542209	7542209	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcggccggcccacagcacgCcccggggcagccagtgcacg	15	18	0	0	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_080662	exon5	c.G605A	p.G202D	AGCACGCCCCGGG		28	3	0.11	23	0	0				6	0	0				T	7542209	C	T	7542209	3	4	126	1	0	0	0	0	1	0	0	0	11786	739	26	2	124	2	PEX11G	19	7542209	Missense_Mutation	SNP	C	TCGA-XY-A89B-01A-11D-A435-10	604828	7542209	51586774	57	9211											
FBN3	84467	mdanderson.org	37	chr19	8145898	8145898	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcactcaccgaagcaggccTggtggtgctgggtgaagccg	16	11	2	1	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_032447	exon58	c.A7442G	p.Q2481R	CAGGCCTGGTGGT		17	2	0.12	25	0	0				35	0	0				C	8145898	T	C	8145898	3	2	126	1	0	0	0	0	1	0	0	0	5736	1580	55	4	1011	4	FBN3	19	8145898	Missense_Mutation	SNP	T	TCGA-XY-A89B-01A-11D-A435-10	603689	8145898	50983085	58	9212											
PRKCSH	5589	hgsc.bcm.edu	37	chr19	11558370	11558370	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggaggaggaggaggaGgaagaagaggctgaagaaga	22	1	0	5	rs77563879	bycluster	TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	PRKCSH,caecum,carcinoma,0,1	PRKCSH	NM_001001329	exon11	c.G966A	p.E322E	GGAGGAGGAAGAA		55	3	0.05	77	1	0.012987013		0	1	127	0	0				A	11558370	G	A	11558370	2	1	126	1	0	0	0	0	0	0	0	1	12567	991	35	3		3	PRKCSH	19	11558370	Silent	SNP	G	TCGA-XY-A89B-01A-11D-A435-10	3412472	11558370	47570613	59	9213											
MRI1	84245	broad.mit.edu;mdanderson.org	37	chr19	13879552	13879552	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcccataggggcgtgtcagGtaagcagacggtaagccctg	16	10	1	1	rs147924371		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	MRI1	NM_001031727	exon4	c.724+1G>A	.	TGTCAGGTAAGCA		38	5	0.13	42	0	0		35		14	14	1				A	13879552	G	A	13879552	5	1	126	1	0	0	0	0	0	0	1	0	9818	1275	44	3	832	3	MRI1	19	13879552	Splice_Site	SNP	G	TCGA-XY-A89B-01A-11D-A435-10	2321182	13879552	45249431	60	9214											
SLC25A42	284439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	19218819	19218819	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccctacgctggcctgagctTcttcacctatgagacgctca	8	15	3	2	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_178526	exon7	c.T614C	p.F205S	TGAGCTTCTTCAC		71	13	0.18	76	0	0				27	6	0.22				C	19218819	T	C	19218819	3	2	126	1	0	0	0	0	1	0	0	0	14561	1783	62	4	636	4	SLC25A42	19	19218819	Missense_Mutation	SNP	T	TCGA-XY-A89B-01A-11D-A435-10	5339267	19218819	39910164	61	9215											
MEGF8	1954	mdanderson.org	37	chr19	42880076	42880076	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgggccgggcgccccagcaGagccacgggtacgggaggta	19	12	0	1	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001271938	exon42	c.G7687T	p.E2563X	CCAGCAGAGCCAC		39	3	0.08	44	0	0				11	0	0				T	42880076	G	T	42880076	4	4	126	1	0	0	0	0	0	1	0	0	9512	943	33	3	7648	3	MEGF8	19	42880076	Nonsense_Mutation	SNP	G	TCGA-XY-A89B-01A-11D-A435-10	23661257	42880076	16248907	62	9216											
ZC3H4	23211	mdanderson.org	37	chr19	47575844	47575844	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagcctgcgggccaggggGccgaggaggggtgggcagga	24	8	0	0	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_015168	exon12	c.C1567A	p.P523T	CAGGGGGCCGAGG		35	3	0.09	31	0	0				18	0	0				T	47575844	G	T	47575844	3	4	126	1	0	0	0	0	1	0	0	0	17628	1203	42	2	2360	2	ZC3H4	19	47575844	Missense_Mutation	SNP	G	TCGA-XY-A89B-01A-11D-A435-10	4695768	47575844	11553139	63	9217											
ZNF808	388558	mdanderson.org	37	chr19	53050833	53050833	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggaaattcctgaaccctgcAcagagggctttgtacaggga	12	9	0	2	rs377723416		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001039886	exon4	c.A132G	p.A44A	CCCTGCACAGAGG		65	7	0.11	97	1	0.0103092784				22	0	0				G	53050833	A	G	53050833	2	3	126	1	0	0	0	0	0	0	0	1	18220	146	6	4		4	ZNF808	19	53050833	Silent	SNP	A	TCGA-XY-A89B-01A-11D-A435-10	5474989	53050833	6078150	64	9218											
CNOT3	4849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	54646888	54646888	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcctcaagaaggtgtccgAgggcgtggagcagtttgaag	16	8	1	2	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	CNOT3,NS,carcinoma,+1,6	CNOT3	NM_014516	exon3	c.A59C	p.E20A	TGTCCGAGGGCGT		71	10	0.14	75	0	0		1	6	171	54	0.32				C	54646888	A	C	54646888	3	2	126	1	0	0	0	0	1	0	0	0	3643	304	11	4	65	4	CNOT3	19	54646888	Missense_Mutation	SNP	A	TCGA-XY-A89B-01A-11D-A435-10	1596055	54646888	4482095	65	9219											
CSRP2BP	57325	broad.mit.edu	37	chr20	18142572	18142572	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	attaaaagagaaaaggtctcGaactcaggaagcaaaagaca	9	6	2	2	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	CSRP2BP,NS,carcinoma,0,3	CSRP2BP	NM_020536	exon5	c.G791T	p.R264L	GGTCTCGAACTCA		94	4	0.04	88	0	0		80	3	110	0	0				T	18142572	G	T	18142572	3	4	126	1	0	0	0	0	1	0	0	0	3993	1058	37	1	809	1	CSRP2BP	20	18142572	Missense_Mutation	SNP	G	TCGA-XY-A89B-01A-11D-A435-10		18142572	44882948	66	9220											
AIRE	326	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr21	45716314	45716316	+	Missense_Mutation	TNP	TCC	TCC	GTT													tgcacagggatgacctggagTcccttctgagcgaggtaacg					novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	TCC	TCC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_000383	exon13	c.C1554T	p.S518V	CTGGAGTCCCTTC		65	8	0.12	104	0	0				0	0					GTT	45716316	TCC	GTT	45716314	3	3	126	1	0	0	0	0	1	0	0	0	434	1667	58	4	1890	4	AIRE	21	45716314	Missense_Mutation	TNP	TCC	TCGA-XY-A89B-01A-11D-A435-10		45716314	2413581	67	9221											
LSS	4047	mdanderson.org	37	chr21	47642587	47642587	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcactgaccgcaggtaccGcacaatctcttctctgtatc	7	15	2	1	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	LSS,colon,carcinoma,+1,1	LSS	NM_001145436	exon4	c.C385T	p.R129W	GGTACCGCACAAT		49	3	0.06	28	0	0		1	1	97	0	0				A	47642587	G	A	47642587	3	1	126	1	0	0	0	0	1	0	0	0	9109	1086	38	1	1889	1	LSS	21	47642587	Missense_Mutation	SNP	G	TCGA-XY-A89B-01A-11D-A435-10	1926273	47642587	487308	68	9222											
THOC5	8563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	29916094	29916094	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agtcgctcaaagtcaggatgCtgcagaaaagaagataaata	10	6	2	3	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001002877	exon16	c.1278-1G>C	.	AGGATGCTGCAGA		52	10	0.19	57	0	0				7	7	1				G	29916094	C	G	29916094	5	3	126	1	0	0	0	0	0	0	1	0	15927	811	28	5	802	5	THOC5	22	29916094	Splice_Site	SNP	C	TCGA-XY-A89B-01A-11D-A435-10		29916094	21388472	69	9223											
APOBEC3B	9582	hgsc.bcm.edu	37	chr22	39382074	39382074	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagtcaggcaggagcccgCgtgacgatcatggactatga	14	10	2	3	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	APOBEC3B,NS,carcinoma,+1,1	APOBEC3B	NM_004900	exon3	c.C432T	p.R144R	AGCCCGCGTGACG		37	3	0.08	43	0	0		1	1	12	0	0				T	39382074	C	T	39382074	2	4	126	1	0	0	0	0	0	0	0	1	787	755	27	1		1	APOBEC3B	22	39382074	Silent	SNP	C	TCGA-XY-A89B-01A-11D-A435-10	9465980	39382074	11922492	70	9224											
CYBB	1536	mdanderson.org	37	chrX	37665737	37665737	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgcaggaaaggaacaatgCcggcttcctcagctacaaca	10	11	1	0	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_000397	exon11	c.C1412T	p.A471V	ACAATGCCGGCTT		48	3	0.06	53	0	0				690	0	0				T	37665737	C	T	37665737	3	4	126	1	0	0	0	0	1	0	0	0	4156	739	26	2	1454	2	CYBB	23	37665737	Missense_Mutation	SNP	C	TCGA-XY-A89B-01A-11D-A435-10		37665737	117604823	71	9225											
PORCN	64840	broad.mit.edu	37	chrX	48370301	48370301	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagatgcacatggtagacacCgtgacatggcacaagatgcg	13	9	0	4	rs142038251		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	PORCN	NM_203475	exon3	c.C351T	p.T117T	AGACACCGTGACA		295	5	0.02	301	0	0		61		30	0	0				T	48370301	C	T	48370301	2	4	126	1	0	0	0	0	0	0	0	1	12305	639	23	1		1	PORCN	23	48370301	Silent	SNP	C	TCGA-XY-A89B-01A-11D-A435-10	10704564	48370301	106900259	72	9226											
RERE	473	ucsc.edu;bcgsc.ca	37	chr1	8424850	8424850	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtaccccttcagctcctgcTcactgtcctcactgtcgaag	7	17	3	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	RERE	NM_012102	exon15	c.A1496G	p.E499G	TCCTGCTCACTGT		32	4	0.13	34	0	0		129		99	0	0				C	8424850	T	C	8424850	3	2	127	1	0	0	0	0	1	0	0	0	13282	1551	54	4	3244	4	RERE	1	8424850	Missense_Mutation	SNP	T	TCGA-XY-A8S2-01A-11D-A435-10		8424850	240825771	1	9227											
PHACTR4	65979	broad.mit.edu	37	chr1	28793239	28793239	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccaagcagccccctatcccTccccctaaaccagctcacag	5	21	1	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	PHACTR4	NM_023923	exon5	c.T813C	p.P271P	TATCCCTCCCCCT		122	5	0.04	128	1	0.0078125		64		57	0	0				C	28793239	T	C	28793239	2	2	127	1	0	0	0	0	0	0	0	1	11859	1538	54	4		4	PHACTR4	1	28793239	Silent	SNP	T	TCGA-XY-A8S2-01A-11D-A435-10	20368389	28793239	220457382	2	9228											
FOXD2	2306	hgsc.bcm.edu;broad.mit.edu	37	chr1	47905268	47905268	+	Frame_Shift_Del	DEL	C	C	-													tcccggtttgccagcaaagtCgccggccttagtggctgcca					novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_004474	exon1	c.1460delT	p.V487fs	CAAAGTCGCCGGC		144	13	0.09	90	0	0				1	0	0				-	47905268	C	-	47905268	7	5	127	1	0	1	0	1	0	0	0	0	6029	871	31	0	1463	0	FOXD2	1	47905268	Frame_Shift_Del	DEL	C	TCGA-XY-A8S2-01A-11D-A435-10	19112029	47905268	201345353	3	9229	21	3									
FOXD2	2306	hgsc.bcm.edu;broad.mit.edu	37	chr1	47905271	47905272	+	Frame_Shift_Ins	INS	-	-	A													ggtttgccagcaaagtcgccINSggccttagtggctgccactt					novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_004474	exon1	c.1464_1465insA	p.A488fs	AGTCGCCGGCCTT		155	10	0.06	98	0	0				0	0					A	47905272	-	A	47905271	7	5	127	1	0	1	1	0	0	0	0	0	6029	639	23	0	1466	0	FOXD2	1	47905271	Frame_Shift_Ins	INS	-	TCGA-XY-A8S2-01A-11D-A435-10	3	47905271	201345350	4	9230	21	3									
FOXD2	2306	hgsc.bcm.edu;broad.mit.edu	37	chr1	47905272	47905273	+	In_Frame_Ins	INS	-	-	CAAAGA													gtttgccagcaaagtcgccgINSgccttagtggctgccacttc					novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_004474	exon1	c.1465_1466insCAAAGA	p.G489delinsAKS	GTCGCCGGCCTTA		158	10	0.06	99	0	0				0	0					CAAAGA	47905273	-	CAAAGA	47905272	7	5	127	1	0	1	1	0	0	0	0	0	6029	1116	39	0	1467	0	FOXD2	1	47905272	In_Frame_Ins	INS	-	TCGA-XY-A8S2-01A-11D-A435-10	1	47905272	201345349	5	9231	21	3									
ZCCHC11	23318	broad.mit.edu	37	chr1	52991402	52991403	+	Frame_Shift_Ins	INS	-	-	T													agaagtaaaggagcttggaaINSttttttttccaatctgttgt					novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	ZCCHC11	NM_001009881	exon2	c.551_552insA	p.I184fs	CTTGGAATTTTTT		526	0	0	166	0	0		151		188	0	0				T	52991403	-	T	52991402	7	5	127	1	0	1	1	0	0	0	0	0	17638	101	4	0	4502	0	ZCCHC11	1	52991402	Frame_Shift_Ins	INS	-	TCGA-XY-A8S2-01A-11D-A435-10	5086130	52991402	196259219	6	9232											
ATP1A1	476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	116940526	116940526	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctagggatgccaaggcctgcGtagtacacggcagtgatcta	13	10	1	1	rs200285355		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	ATP1A1,NS,carcinoma,-2,1	ATP1A1	NM_000701	exon15	c.G1990A	p.V664I	GCCTGCGTAGTAC		51	9	0.18	48	0	0	0.001	-2	1	1540	144	0.09				A	116940526	G	A	116940526	3	1	127	1	0	0	0	0	1	0	0	0	1127	1145	40	1	2064	1	ATP1A1	1	116940526	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	63949124	116940526	132310095	7	9233											
CD1C	911	broad.mit.edu	37	chr1	158261009	158261009	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaggtcagggctcaggatgGctggacgagttgcagactca	16	9	3	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	CD1C	NM_001765	exon2	c.G147T	p.W49C	AGGATGGCTGGAC		174	4	0.02	198	0	0		100		1	0	0				T	158261009	G	T	158261009	3	4	127	1	0	0	0	0	1	0	0	0	2998	1212	42	2	153	2	CD1C	1	158261009	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	41320483	158261009	90989612	8	9234											
ZBTB37	84614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	173839876	173839876	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacgacataataccccaaaGggaaaccggcgaggtcaggt	11	12	1	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_032522	exon3	c.G513A	p.K171K	CCCAAAGGGAAAC		86	33	0.38	95	0	0				6	5	0.83				A	173839876	G	A	173839876	2	1	127	1	0	0	0	0	0	0	0	1	17596	991	35	3		3	ZBTB37	1	173839876	Silent	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	15578867	173839876	75410745	9	9235											
OBSCN	84033	broad.mit.edu	37	chr1	228553857	228553857	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcgaggctatcattgagggCgacccacagccctcggtgac	12	13	1	2	rs187833194	bycluster;by1000genomes	TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	OBSCN	NM_001271223	exon94	c.C22017T	p.G7339G	TGAGGGCGACCCA		214	5	0.02	197	0	0		2142		1	0	0				T	228553857	C	T	228553857	2	4	127	1	0	0	0	0	0	0	0	1	10859	755	27	1		1	OBSCN	1	228553857	Silent	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	54713981	228553857	20696764	10	9236											
GNPAT	8443	mdanderson.org	37	chr1	231401776	231401776	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gcaggtcttctgaatattgtGatggagccattttttaaaag	10	5	2	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_014236	exon7	c.G789T	p.V263V	TATTGTGATGGAG		47	3	0.06	43	1	0.023255814				51	0	0				T	231401776	G	T	231401776	2	4	127	1	0	0	0	0	0	0	0	1	6582	1277	45	3		3	GNPAT	1	231401776	Silent	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	2847919	231401776	17848845	11	9237											
ACOXL	55289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	111556598	111556598	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	atgccttccttagggccccaCtgtttcatcgttcctgtccg	8	15	1	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001142807	exon7	c.C468G	p.H156Q	GCCCCACTGTTTC		121	24	0.2	94	0	0				64	20	0.31				G	111556598	C	G	111556598	3	3	127	1	0	0	0	0	1	0	0	0	161	564	20	5	490	5	ACOXL	2	111556598	Missense_Mutation	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10		111556598	131642775	12	9238											
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	152486121	152486121	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcacttcgcaagtcgtagcCtttcttttttgcttcttcat	6	11	4	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001271208	exon68	c.G9763C	p.G3255R	CGTAGCCTTTCTT		94	19	0.2	77	0	0				9	4	0.44				G	152486121	C	G	152486121	3	3	127	1	0	0	0	0	1	0	0	0	10348	681	24	5	16383	5	NEB	2	152486121	Missense_Mutation	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	40929523	152486121	90713252	13	9239											
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	162751205	162751205	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaggtatttcatgatgttgCctataaagctaaagatcgta	8	5	1	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001178015	exon11	c.C1211T	p.A404V	ATGTTGCCTATAA		105	27	0.26	86	0	0				0	0					T	162751205	C	T	162751205	3	4	127	1	0	0	0	0	1	0	0	0	14705	739	26	2	1338	2	SLC4A10	2	162751205	Missense_Mutation	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	10265084	162751205	80448168	14	9240											
ABCB11	8647	mdanderson.org	37	chr2	169787208	169787208	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaggatcatagaaacgttcCaacagctgaatgctagtgct	9	9	2	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_003742	exon25	c.G3378C	p.L1126F	ACGTTCCAACAGC		70	5	0.07	74	0	0				0	0					G	169787208	C	G	169787208	3	3	127	1	0	0	0	0	1	0	0	0	42	593	21	5	603	5	ABCB11	2	169787208	Missense_Mutation	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	7036003	169787208	73412165	15	9241											
DLX2	1746	broad.mit.edu	37	chr2	172965287	172965287	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggttagaaaatcgtccccGcgctcaccggggcgcccccg	14	16	1	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	DLX2	NM_004405	exon3	c.C971A	p.A324E	GTCCCCGCGCTCA		70	3	0.04	36	0	0		29		1	0	0				T	172965287	G	T	172965287	3	4	127	1	0	0	0	0	1	0	0	0	4599	1087	38	1	19	1	DLX2	2	172965287	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	3178079	172965287	70234086	16	9242											
HECW2	57520	mdanderson.org	37	chr2	197084819	197084819	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtctatttcagctgtgcctGcgatgaccaattccagttct	9	11	3	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_020760	exon26	c.C4352A	p.A1451E	GTGCCTGCGATGA		47	3	0.06	38	0	0				9	0	0				T	197084819	G	T	197084819	3	4	127	1	0	0	0	0	1	0	0	0	7083	1319	46	2	382	2	HECW2	2	197084819	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	24119532	197084819	46114554	17	9243											
SP140	11262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr2	231174675	231174675	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtgaggtgtgccgggacGgaggggagctgttctgttgc	20	6	1	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_007237	exon23	c.G2095T	p.G699X	CGGGACGGAGGGG		204	50	0.25	186	0	0				16	0	0				T	231174675	G	T	231174675	4	4	127	1	0	0	0	0	0	1	0	0	15015	1117	39	1	2302	1	SP140	2	231174675	Nonsense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	34089856	231174675	12024698	18	9244											
CAPN7	23473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	15274030	15274030	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttctctttctccaggtgaTaattgatgaccagttacctg	8	9	2	3	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_014296	exon10	c.T1037C	p.I346T	AGGTGATAATTGA		61	16	0.26	90	0	0				12	7	0.58				C	15274030	T	C	15274030	3	2	127	1	0	0	0	0	1	0	0	0	2649	1406	49	4	1075	4	CAPN7	3	15274030	Missense_Mutation	SNP	T	TCGA-XY-A8S2-01A-11D-A435-10		15274030	182748400	19	9245											
MLH1	4292	mdanderson.org	37	chr3	37050329	37050329	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaccttttttacaacataGccacgaggagaaaagcttta	8	8	0	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_000249	exon6	c.G478T	p.A160S	AACATAGCCACGA		47	3	0.06	66	0	0				40	0	0				T	37050329	G	T	37050329	3	4	127	1	0	0	0	0	1	0	0	0	9664	971	34	2	500	2	MLH1	3	37050329	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	21776299	37050329	160972101	20	9246											
LAMB2	3913	mdanderson.org	37	chr3	49167754	49167754	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggcgcccagctgtgttatGctgacatccatcacacacac	9	14	1	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	LAMB2,NS,carcinoma,0,1	LAMB2	NM_002292	exon9	c.C1135A	p.H379N	TGTTATGCTGACA		124	5	0.04	86	0	0		0	1	30	0	0				T	49167754	G	T	49167754	3	4	127	1	0	0	0	0	1	0	0	0	8649	1319	46	2	4357	2	LAMB2	3	49167754	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	12117425	49167754	148854676	21	9247											
NISCH	11188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	52492745	52492745	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gataattgggaaaaactcaaGaagcttggtggagaagaggg	15	3	1	3	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001276293	exon3	c.G245C	p.R82T	ACTCAAGAAGCTT		152	37	0.24	87	0	0				70	19	0.27				C	52492745	G	C	52492745	3	2	127	1	0	0	0	0	1	0	0	0	10478	942	33	5	255	5	NISCH	3	52492745	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	3324991	52492745	145529685	22	9248											
WFS1	7466	broad.mit.edu	37	chr4	6296878	6296878	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgaagatgatgacgagctgGcggggaagagccctgaggac	17	8	0	5	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	WFS1	NM_001145853	exon7	c.G823T	p.A275S	GAGCTGGCGGGGA		32	3	0.09	53	0	0		71		22	0	0				T	6296878	G	T	6296878	3	4	127	1	0	0	0	0	1	0	0	0	17419	1203	42	2	845	2	WFS1	4	6296878	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10		6296878	184857398	23	9249											
FRYL	285527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	48597656	48597656	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atatattgagaggtgtgtcaCgaggaaccacacttcgtgag	12	7	1	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_015030	exon15	c.G1199A	p.R400H	GTGTCACGAGGAA		203	75	0.37	253	0	0				11	4	0.36				T	48597656	C	T	48597656	3	4	127	1	0	0	0	0	1	0	0	0	6098	536	19	1	8042	1	FRYL	4	48597656	Missense_Mutation	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	42300778	48597656	142556620	24	9250											
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	37044488	37044488	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttatctgcaatgttgcaaaaAtcctagagctagttgtacca	7	8	1	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	NIPBL_ENST00000448238,neck,malignant_melanoma,-2,2	NIPBL_ENST00000448238	NM_015384	exon35	c.A6148T	p.I2050F	GCAAAAATCCTAG		133	54	0.41	159	0	0		-2	2	115	58	0.5				T	37044488	A	T	37044488	3	4	127	1	0	0	0	0	1	0	0	0	10474	101	4	5	6282	5	NIPBL	5	37044488	Missense_Mutation	SNP	A	TCGA-XY-A8S2-01A-11D-A435-10		37044488	143870772	25	9251											
EGFLAM	133584	mdanderson.org	37	chr5	38427181	38427181	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaactccctggccactggaGccccagcattacctttcctt	7	17	0	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001205301	exon14	c.G1881T	p.E627D	ACTGGAGCCCCAG		33	3	0.09	74	0	0				10	0	0				T	38427181	G	T	38427181	3	4	127	1	0	0	0	0	1	0	0	0	4992	962	34	2	1949	2	EGFLAM	5	38427181	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	1382693	38427181	142488079	26	9252											
SEMA6A	57556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	115837930	115837930	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcaatgtagagggttccgTtcatgatcataatcatctgg	10	8	4	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_020796	exon3	c.A194T	p.N65I	GTTCCGTTCATGA		147	22	0.15	186	0	0				246	79	0.32				A	115837930	T	A	115837930	3	1	127	1	0	0	0	0	1	0	0	0	14092	1725	60	5	2966	5	SEMA6A	5	115837930	Missense_Mutation	SNP	T	TCGA-XY-A8S2-01A-11D-A435-10	77410749	115837930	65077330	27	9253											
AFF4	27125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	132232477	132232479	+	In_Frame_Del	DEL	CTT	CTT	-													cgaggggaagacttagactcCttctttatattgggtttcct					novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	CTT	CTT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_014423	exon11	c.1844_1846del	p.615_616del	AGACTCCTTCTTT		105	38	0.36	136	0	0				64	0	0				-	132232479	CTT	-	132232477	7	5	127	1	0	1	0	1	0	0	0	0	358	680	24	0	1690	0	AFF4	5	132232477	In_Frame_Del	DEL	CTT	TCGA-XY-A8S2-01A-11D-A435-10	16394547	132232477	48682783	28	9254											
KDM3B	51780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	137762705	137762705	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagccaatggtgctcaaaCtcaaggactggcctcctggg	13	12	2	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_016604	exon18	c.C4453T	p.L1485F	CTCAAACTCAAGG		61	17	0.28	77	0	0				245	108	0.44				T	137762705	C	T	137762705	3	4	127	1	0	0	0	0	1	0	0	0	8170	565	20	3	4523	3	KDM3B	5	137762705	Missense_Mutation	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	5530228	137762705	43152555	29	9255											
TNIP1	10318	mdanderson.org	37	chr5	150444639	150444639	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagggtcgtagatccggtaCggtcctctcccttccatgag	11	14	1	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001252385	exon2	c.G18A	p.P6P	CCGGTACGGTCCT		39	3	0.08	60	0	0				48	0	0				T	150444639	C	T	150444639	2	4	127	1	0	0	0	0	0	0	0	1	16373	523	19	1		1	TNIP1	5	150444639	Silent	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	12681934	150444639	30470621	30	9256											
DOK3	79930	hgsc.bcm.edu;bcgsc.ca	37	chr5	176936846	176936848	+	In_Frame_Del	DEL	CGA	CGA	-													ctgatcgcagtctggctcccCgagtcatgagttcccgcccc					novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	CGA	CGA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_024872	exon1	c.7_9del	p.3_3del	GCTCCCCGAGTCA		42	14	0.33	66	0	0				0	0					-	176936848	CGA	-	176936846	7	5	127	1	0	1	0	1	0	0	0	0	4725	652	23	0	1858	0	DOK3	5	176936846	In_Frame_Del	DEL	CGA	TCGA-XY-A8S2-01A-11D-A435-10	26492207	176936846	3978414	31	9257											
WRNIP1	56897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	2770515	2770515	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgactattttaatgcgagcGatcaactccctgggaatcca	9	10	1	1	rs148604433		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_020135	exon3	c.G1176A	p.A392A	GCGAGCGATCAAC		100	6	0.06	89	0	0	0			214	14	0.07				A	2770515	G	A	2770515	2	1	127	1	0	0	0	0	0	0	0	1	17462	1045	37	1		1	WRNIP1	6	2770515	Silent	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10		2770515	168344552	32	9258											
HIST1H2AD	3013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	26199104	26199105	+	Frame_Shift_Del	DEL	CT	CT	-													tgcccttggccttgtggtgaCtctcagtcttcttggggagc					novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	CT	CT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_021065	exon1	c.368_369del	p.123_123del	TGGTGACTCTCAG		260	73	0.28	249	0	0				1	0	0				-	26199105	CT	-	26199104	7	5	127	1	0	1	0	1	0	0	0	0	7171	565	20	0	28	0	HIST1H2AD	6	26199104	Frame_Shift_Del	DEL	CT	TCGA-XY-A8S2-01A-11D-A435-10	23428589	26199104	144915963	33	9259											
HIST1H3H	8357	broad.mit.edu	37	chr6	27777859	27777859	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tagctctgaaggcatggcgcGtacgaagcagactgctcgca	13	11	1	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	HIST1H3H	NM_003536	exon1	c.G8A	p.R3H	TGGCGCGTACGAA		93	4	0.04	78	1	0.0128205128		25		2	0	0				A	27777859	G	A	27777859	3	1	127	1	0	0	0	0	1	0	0	0	7202	1145	40	1	10	1	HIST1H3H	6	27777859	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	1578755	27777859	143337208	34	9260											
HIST1H1B	3009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	27834706	27834706	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttagcggctttgggctttGccgccttcggcttaactgcc	12	13	0	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_005322	exon1	c.C602T	p.A201V	GGCTTTGCCGCCT		148	31	0.21	113	0	0				1	0	0				A	27834706	G	A	27834706	3	1	127	1	0	0	0	0	1	0	0	0	7163	1319	46	2	82	2	HIST1H1B	6	27834706	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	56847	27834706	143280361	35	9261											
TJAP1	93643	mdanderson.org	37	chr6	43473096	43473096	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaccaccagcccagcccaGcacccctaacactcagtgcc	5	23	1	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001146017	exon10	c.G1177A	p.A393T	AGCCCAGCACCCC		19	2	0.11	16	0	0				121	0	0				A	43473096	G	A	43473096	3	1	127	1	0	0	0	0	1	0	0	0	15987	971	34	2	1207	2	TJAP1	6	43473096	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	15638390	43473096	127641971	36	9262											
VEGFA	7422	mdanderson.org	37	chr6	43738965	43738965	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgcgagccgcgccggcccCggtcgggcctccgaaaccat	14	18	0	0	rs370465512	alternate_allele	TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001204385	exon1	c.C522T	p.P174P	CGGCCCCGGTCGG		27	3	0.11	15	0	0				39	0	0				T	43738965	C	T	43738965	2	4	127	1	0	0	0	0	0	0	0	1	17209	639	23	1		1	VEGFA	6	43738965	Silent	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	265869	43738965	127376102	37	9263											
KIAA1009	22832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	84862439	84862439	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcttgctgtccagggttcCagggaaggagttagcatttc	13	9	0	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_014895	exon23	c.G3454A	p.G1152R	GGGTTCCAGGGAA		141	8	0.06	149	0	0				11	0	0				T	84862439	C	T	84862439	3	4	127	1	0	0	0	0	1	0	0	0	8244	603	21	3	777	3	KIAA1009	6	84862439	Missense_Mutation	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	41123474	84862439	86252628	38	9264											
ABCB5	340273	broad.mit.edu	37	chr7	20687234	20687234	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaaaccttcgcaatagcccGaggagctgcctttcatattt	8	11	1	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	ABCB5	NM_001163941	exon10	c.G1058A	p.R353Q	TAGCCCGAGGAGC		155	4	0.03	87	0	0		357		0	0					A	20687234	G	A	20687234	3	1	127	1	0	0	0	0	1	0	0	0	44	1058	37	1	1092	1	ABCB5	7	20687234	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10		20687234	138451429	39	9265											
SP4	6671	broad.mit.edu	37	chr7	21468306	21468306	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgttgcagatcagaagaagGaggaggaggaggaggcggca	19	4	1	3	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	SP4,colon,carcinoma,0,1	SP4	NM_003112	exon2	c.G19A	p.E7K	AAGAAGGAGGAGG		63	4	0.06	39	1	0.0256410256		91	1	8	0	0				A	21468306	G	A	21468306	3	1	127	1	0	0	0	0	1	0	0	0	15019	1175	41	3	25	3	SP4	7	21468306	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	781072	21468306	137670357	40	9266											
STK31	56164	bcgsc.ca;mdanderson.org	37	chr7	23776556	23776556	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttggtgactttaatttaggGtctaacgtcagcctggaaaa	11	6	2	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	STK31	NM_031414	exon8	c.G876T	p.G292G	TTTAGGGTCTAAC		87	5	0.06	60	0	0		175		2	0	0				T	23776556	G	T	23776556	2	4	127	1	0	0	0	0	0	0	0	1	15351	1248	44	3		3	STK31	7	23776556	Silent	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	2308250	23776556	135362107	41	9267											
FAM188B	84182	mdanderson.org	37	chr7	30868345	30868345	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatggtgagctgggtgcccTgcggctcggtaggtgcagcg	20	9	0	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_032222	exon6	c.T1124C	p.L375P	GTGCCCTGCGGCT		47	3	0.06	23	0	0				11	0	0				C	30868345	T	C	30868345	3	2	127	1	0	0	0	0	1	0	0	0	5545	1580	55	4	1146	4	FAM188B	7	30868345	Missense_Mutation	SNP	T	TCGA-XY-A8S2-01A-11D-A435-10	7091789	30868345	128270318	42	9268											
OR2AE1	81392	mdanderson.org	37	chr7	99474221	99474221	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcccccaaccatgacatgaCagccatcatcagtcccacct	5	18	2	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001005276	exon1	c.G436A	p.V146I	ACATGACAGCCAT		48	3	0.06	36	0	0				1	0	0				T	99474221	C	T	99474221	3	4	127	1	0	0	0	0	1	0	0	0	11030	478	17	3	539	3	OR2AE1	7	99474221	Missense_Mutation	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	68605876	99474221	59664442	43	9269											
ZC3HC1	51530	broad.mit.edu	37	chr7	129664141	129664141	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagtggcatcctggctccGggtcatcatcctccgaggag	13	12	2	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	ZC3HC1	NM_016478	exon7	c.C982A	p.R328R	GGCTCCGGGTCAT		67	3	0.04	49	0	0		45		182	0	0				T	129664141	G	T	129664141	2	4	127	1	0	0	0	0	0	0	0	1	17635	1115	39	1		1	ZC3HC1	7	129664141	Silent	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	30189920	129664141	29474522	44	9270											
ZNF862	643641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	149545019	149545019	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagaagtcgtggtttgtgcAgtttccgtggctgatcatga	13	8	1	3	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001099220	exon4	c.A437C	p.Q146P	TTGTGCAGTTTCC		109	14	0.13	72	0	0				5	0	0				C	149545019	A	C	149545019	3	2	127	1	0	0	0	0	1	0	0	0	18237	188	7	4	451	4	ZNF862	7	149545019	Missense_Mutation	SNP	A	TCGA-XY-A8S2-01A-11D-A435-10	19880878	149545019	9593644	45	9271											
ABCF2	10061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	150912779	150912779	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gtagcacttcatcatgtactCcaaaggtgagagatctaagt	9	8	3	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_005692	exon13	c.G1441C	p.E481Q	TGTACTCCAAAGG		187	24	0.13	115	0	0				266	50	0.19				G	150912779	C	G	150912779	3	3	127	1	0	0	0	0	1	0	0	0	66	864	30	5	483	5	ABCF2	7	150912779	Missense_Mutation	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	1367760	150912779	8225884	46	9272											
CHPF2	54480	broad.mit.edu	37	chr7	150931207	150931207	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtttcctggatccagggggAgggagaagatccctgtgtcg	17	8	0	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	CHPF2,bladder,carcinoma,0,1	CHPF2	NM_019015	exon1	c.A110G	p.E37G	AGGGGGAGGGAGA		139	5	0.04	99	1	0.0101010101		52	1	84	0	0				G	150931207	A	G	150931207	3	3	127	1	0	0	0	0	1	0	0	0	3391	304	11	4	112	4	CHPF2	7	150931207	Missense_Mutation	SNP	A	TCGA-XY-A8S2-01A-11D-A435-10	18428	150931207	8207456	47	9273											
CDCA2	157313	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr8	25344851	25344851	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacttctaacagaagaaatGtaagtgtttgtgtttggcac	11	5	1	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_152562	exon12	c.1533+1G>A	.	AGAAATGTAAGTG		70	9	0.13	78	0	0				0	0					A	25344851	G	A	25344851	5	1	127	1	0	0	0	0	0	0	1	0	3108	1391	48	3	1576	3	CDCA2	8	25344851	Splice_Site	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10		25344851	121019171	48	9274											
VPS13B	157680	broad.mit.edu;mdanderson.org	37	chr8	100523425	100523425	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaaaatgtccgccacaagTtaacatcaagaaatgagcga	7	9	1	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	VPS13B	NM_017890	exon29	c.T4393G	p.L1465V	CACAAGTTAACAT		72	4	0.06	106	0	0		811		4	0	0				G	100523425	T	G	100523425	3	3	127	1	0	0	0	0	1	0	0	0	17249	1722	60	4	4697	4	VPS13B	8	100523425	Missense_Mutation	SNP	T	TCGA-XY-A8S2-01A-11D-A435-10	75178574	100523425	45840597	49	9275											
COL14A1	7373	broad.mit.edu	37	chr8	121322273	121322273	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaggactccgaggaccaaAgggccagcaaggtgaaccgg	14	12	0	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	COL14A1	NM_021110	exon37	c.A4427G	p.K1476R	GACCAAAGGGCCA		104	3	0.03	97	0	0		292		105	0	0				G	121322273	A	G	121322273	3	3	127	1	0	0	0	0	1	0	0	0	3694	72	3	4	4569	4	COL14A1	8	121322273	Missense_Mutation	SNP	A	TCGA-XY-A8S2-01A-11D-A435-10	20798848	121322273	25041749	50	9276											
DENND4C	55667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	19346326	19346326	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcttgaggaaagccaagaaCtccttgagcctgtggttgat	12	8	0	4	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_017925	exon22	c.C3412T	p.L1138F	CAAGAACTCCTTG		90	28	0.31	65	0	0				45	13	0.29				T	19346326	C	T	19346326	3	4	127	1	0	0	0	0	1	0	0	0	4463	565	20	3	2774	3	DENND4C	9	19346326	Missense_Mutation	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10		19346326	121867105	51	9277											
MELK	9833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	36657333	36657333	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaagatgatttatcaacAggtgctgctactccccgaac	9	10	1	3	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	MELK,right_lower_lobe,carcinoma,+2,1	MELK	NM_014791	exon13	c.A1149C	p.T383T	ATCAACAGGTGCT		106	32	0.3	71	0	0		2	1	110	43	0.39				C	36657333	A	C	36657333	2	2	127	1	0	0	0	0	0	0	0	1	9519	175	7	4		4	MELK	9	36657333	Silent	SNP	A	TCGA-XY-A8S2-01A-11D-A435-10	17311007	36657333	104556098	52	9278											
TRAF2	7186	mdanderson.org	37	chr9	139811054	139811054	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcagattccacgccatcgGctgcctcgagacggtgagtc	12	13	0	3	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_021138	exon7	c.G665A	p.G222D	CCATCGGCTGCCT		31	3	0.1	35	0	0				66	0	0				A	139811054	G	A	139811054	3	1	127	1	0	0	0	0	1	0	0	0	16498	1203	42	2	687	2	TRAF2	9	139811054	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	103153721	139811054	1402377	53	9279											
DCLRE1C	64421	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	14976452	14976454	+	In_Frame_Del	DEL	ACA	ACA	-													ccgctttgcagttcagccacAcaacatggtacgggctccga					novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	ACA	ACA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001033855	exon8	c.604_606del	p.202_202del	AGCCACACAACAT		178	51	0.29	215	0	0				7	0	0				-	14976454	ACA	-	14976452	7	5	127	1	0	1	0	1	0	0	0	0	4319	159	6	0	1501	0	DCLRE1C	10	14976452	In_Frame_Del	DEL	ACA	TCGA-XY-A8S2-01A-11D-A435-10		14976452	120558295	54	9280											
FZD8	8325	mdanderson.org	37	chr10	35928341	35928341	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtgcccgaccgccacgtcaGgccagtgctgacgtcgctgt	13	16	1	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_031866	exon1	c.C2017A	p.L673M	ACGTCAGGCCAGT		22	2	0.09	35	0	0				0	0					T	35928341	G	T	35928341	3	4	127	1	0	0	0	0	1	0	0	0	6170	991	35	3	71	3	FZD8	10	35928341	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	20951889	35928341	99606406	55	9281											
SLIT1	6585	mdanderson.org	37	chr10	98791382	98791382	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaggcgcagggagcggaGtccctggaaggccaaaggcg	18	11	0	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_003061	exon24	c.C2491A	p.L831I	AGCGGAGTCCCTG		42	3	0.07	65	0	0				4	0	0				T	98791382	G	T	98791382	3	4	127	1	0	0	0	0	1	0	0	0	14792	1029	36	3	2169	3	SLIT1	10	98791382	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	62863041	98791382	36743365	56	9282											
BLOC1S2	282991	mdanderson.org	37	chr10	102045950	102045950	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggctcctttgcttcctcagCtgtctccacggcggcatcgt	10	15	2	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_173809	exon2	c.G76A	p.A26T	CCTCAGCTGTCTC		33	3	0.09	66	0	0				106	0	0				T	102045950	C	T	102045950	3	4	127	1	0	0	0	0	1	0	0	0	1448	797	28	2	368	2	BLOC1S2	10	102045950	Missense_Mutation	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	3254568	102045950	33488797	57	9283											
SMC3	9126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	112352948	112352948	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtttcaacccagctggccCgtgctttcactatggactgt	9	12	2	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_005445	exon18	c.C1930T	p.R644C	CTGGCCCGTGCTT		107	46	0.43	96	0	0				211	91	0.43				T	112352948	C	T	112352948	3	4	127	1	0	0	0	0	1	0	0	0	14837	652	23	1	2000	1	SMC3	10	112352948	Missense_Mutation	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	10306998	112352948	23181799	58	9284											
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	115349537	115349537	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caacacctctggtcaggttcAagtctgatttatacttgacc	7	11	4	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001261463	exon41	c.T4976C	p.L1659S	AGGTTCAAGTCTG		31	12	0.39	44	0	0				0	0					G	115349537	A	G	115349537	3	3	127	1	0	0	0	0	1	0	0	0	10685	131	5	4	224	4	NRAP	10	115349537	Missense_Mutation	SNP	A	TCGA-XY-A8S2-01A-11D-A435-10	2996589	115349537	20185210	59	9285											
TACC2	10579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	123844801	123844801	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgggagagttctctgacagAagagtcagaattgtcagcac	12	7	3	5	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_206862	exon4	c.A2786T	p.E929V	TGACAGAAGAGTC		51	16	0.31	62	0	0				0	0					T	123844801	A	T	123844801	3	4	127	1	0	0	0	0	1	0	0	0	15558	246	9	5	2796	5	TACC2	10	123844801	Missense_Mutation	SNP	A	TCGA-XY-A8S2-01A-11D-A435-10	8495264	123844801	11689946	60	9286											
BRSK2	9024	mdanderson.org	37	chr11	1475738	1475738	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgaagaagtcctggtttgGgaacttcatcagcctggaga	14	8	2	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001256630	exon16	c.G1706T	p.G569V	GGTTTGGGAACTT		40	3	0.08	83	0	0				24	0	0				T	1475738	G	T	1475738	3	4	127	1	0	0	0	0	1	0	0	0	1526	1232	43	3	1630	3	BRSK2	11	1475738	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10		1475738	133530778	61	9287											
STIM1	6786	mdanderson.org	37	chr11	3877621	3877621	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccagctcgggggccaactctGaggagtccactgcagcaggt	14	13	1	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_003156	exon1	c.G121T	p.E41X	AACTCTGAGGAGT		27	3	0.11	32	0	0				14	0	0				T	3877621	G	T	3877621	4	4	127	1	0	0	0	0	0	1	0	0	15338	1291	45	3	123	3	STIM1	11	3877621	Nonsense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	2401883	3877621	131128895	62	9288											
ST5	6764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	8734259	8734259	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgcttcagcatcgactggaTgtggaccaggcgctgtgtgt	15	10	1	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_005418	exon12	c.A2011C	p.I671L	ACTGGATGTGGAC		34	9	0.26	37	0	0				8	3	0.38				G	8734259	T	G	8734259	3	3	127	1	0	0	0	0	1	0	0	0	15275	1464	51	4	1450	4	ST5	11	8734259	Missense_Mutation	SNP	T	TCGA-XY-A8S2-01A-11D-A435-10	4856638	8734259	126272257	63	9289											
BDNF	627	mdanderson.org	37	chr11	27681195	27681195	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgtgtgtgtgtgtgtgtgTgcgcgcgcgcgtgtgcgcgc	19	9	1	0	rs28405820		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	.	.	.	.	TGTGTGTGCGCGC		100	6	0.06	94	1	0.0106382979				0	0					C	27681195	T	C	27681195	1	2	127	0	1	0	0	0	0	0	0	0	1392	1710	59	4		4	BDNF	11	27681195	RNA	SNP	T	TCGA-XY-A8S2-01A-11D-A435-10	18946936	27681195	107325321	64	9290											
MED19	219541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	57472453	57472453	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaggactcaccgggccagTgtggaggcggaagccggcca	16	12	1	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_153450	exon2	c.A466C	p.T156P	GGCCAGTGTGGAG		34	12	0.35	48	0	0				93	53	0.57				G	57472453	T	G	57472453	3	3	127	1	0	0	0	0	1	0	0	0	9486	1696	59	4	130	4	MED19	11	57472453	Missense_Mutation	SNP	T	TCGA-XY-A8S2-01A-11D-A435-10	29791258	57472453	77534063	65	9291											
SCGB1D2	10647	mdanderson.org	37	chr11	62012170	62012170	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	attgaagaaatgtagtgtgtGacatgtaaaaactttcatcc	8	5	1	3	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_006551	exon3	c.G272T	p.X91L	GTGTGTGACATGT		50	3	0.06	46	0	0				6	0	0				T	62012170	G	T	62012170	3	4	127	1	0	0	0	0	1	0	0	0	13949	1285	45	3	282	3	SCGB1D2	11	62012170	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	4539717	62012170	72994346	66	9292											
ARAP1	116985	broad.mit.edu;mdanderson.org	37	chr11	72438118	72438118	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gccccgtgtactgctccaggTgcaatgcccgcagccactcg	11	17	0	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	ARAP1	NM_001040118	exon3	c.A56T	p.H19L	TCCAGGTGCAATG		31	3	0.1	43	0	0		168		37	5	0.14				A	72438118	T	A	72438118	3	1	127	1	0	0	0	0	1	0	0	0	835	1696	59	5	4428	5	ARAP1	11	72438118	Missense_Mutation	SNP	T	TCGA-XY-A8S2-01A-11D-A435-10	10425948	72438118	62568398	67	9293											
INTS4	92105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	77612564	77612564	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttattctccacaccactgtAcatgaattccattttgtagg	5	11	1	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_033547	exon18	c.T2131C	p.Y711H	CACTGTACATGAA		132	43	0.33	136	0	0				53	26	0.49				G	77612564	A	G	77612564	3	3	127	1	0	0	0	0	1	0	0	0	7823	391	14	4	784	4	INTS4	11	77612564	Missense_Mutation	SNP	A	TCGA-XY-A8S2-01A-11D-A435-10	5174446	77612564	57393952	68	9294											
FAT3	120114	mdanderson.org	37	chr11	92088566	92088566	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aggttcagtatagacgacgaGagtggtaagtgtaatatttt	12	3	1	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001008781	exon1	c.G3288T	p.E1096D	CGACGAGAGTGGT		52	4	0.08	47	0	0				4	0	0				T	92088566	G	T	92088566	3	4	127	1	0	0	0	0	1	0	0	0	5723	933	33	3	3290	3	FAT3	11	92088566	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	14476002	92088566	42917950	69	9295											
EXPH5	23086	hgsc.bcm.edu	37	chr11	108384984	108384984	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	aaacattctgtgaatggtacGattcatatctcttattctcc	5	9	4	1	rs115714924	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_015065	exon6	c.C1250A	p.S417X	TGGTACGATTCAT		96	4	0.04	97	0	0				0	0					T	108384984	G	T	108384984	4	4	127	1	0	0	0	0	0	1	0	0	5350	1059	37	1	4723	1	EXPH5	11	108384984	Nonsense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	16296418	108384984	26621532	70	9296											
TMPRSS13	84000	mdanderson.org	37	chr11	117772964	117772964	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ggccagctggttaggattttCtgaatcgcacctcgctctga	11	11	2	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001077263	exon13	c.G1694T	p.R565I	GATTTTCTGAATC		28	3	0.11	26	0	0				1	0	0				A	117772964	C	A	117772964	3	1	127	1	0	0	0	0	1	0	0	0	16304	913	32	3	13	3	TMPRSS13	11	117772964	Missense_Mutation	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	9387980	117772964	17233552	71	9297											
DYRK4	8798	broad.mit.edu	37	chr12	4721824	4721824	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctgaggaaatccaattccTttttcccctctgagacaagg	7	13	1	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	DYRK4	NM_003845	exon12	c.T1261C	p.F421L	AATTCCTTTTTCC		208	4	0.02	94	0	0		75		171	0	0				C	4721824	T	C	4721824	3	2	127	1	0	0	0	0	1	0	0	0	4884	1609	56	4	1299	4	DYRK4	12	4721824	Missense_Mutation	SNP	T	TCGA-XY-A8S2-01A-11D-A435-10		4721824	129130071	72	9298											
GDF3	9573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr12	7848063	7848063	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctatttccttaccttggtCtgggagaaagcgaagtacat	9	9	2	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	GDF3,NS,malignant_melanoma,0,1	GDF3	NM_020634	exon1	c.G262T	p.D88Y	CTTGGTCTGGGAG		232	34	0.15	67	1	0.0149253731		0	1	5025	512	0.1				A	7848063	C	A	7848063	3	1	127	1	0	0	0	0	1	0	0	0	6356	913	32	3	840	3	GDF3	12	7848063	Missense_Mutation	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	3126239	7848063	126003832	73	9299											
HOXC4	3221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr12	54448769	54448769	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	aaggatcgagatcgcccactCgctgtgcctctctgagaggc	12	13	1	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_014620	exon4	c.C575A	p.S192X	CCCACTCGCTGTG		145	38	0.26	119	0	0				0	0					A	54448769	C	A	54448769	4	1	127	1	0	0	0	0	0	1	0	0	7353	893	31	1	581	1	HOXC4	12	54448769	Nonsense_Mutation	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	46600706	54448769	79403126	74	9300											
PA2G4	5036	broad.mit.edu;mdanderson.org	37	chr12	56501389	56501389	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctacgcctggtcaaacctGgaaatcaggtaagctatttt	8	11	2	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	PA2G4	NM_006191	exon5	c.G478A	p.G160R	AAACCTGGAAATC		57	4	0.07	27	0	0		24		1437	7	0				A	56501389	G	A	56501389	3	1	127	1	0	0	0	0	1	0	0	0	11407	1349	47	3	496	3	PA2G4	12	56501389	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	2052620	56501389	77350506	75	9301											
KNTC1	9735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	123041970	123041970	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	caaatcatatattggagaaaCtggcattgagttctgtggat	10	5	2	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_014708	exon17	c.C1312G	p.L438V	GAGAAACTGGCAT		87	21	0.24	76	0	0				52	20	0.38				G	123041970	C	G	123041970	3	3	127	1	0	0	0	0	1	0	0	0	8470	564	20	5	1374	5	KNTC1	12	123041970	Missense_Mutation	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	66540581	123041970	10809925	76	9302											
RIMBP2	23504	mdanderson.org	37	chr12	130921452	130921452	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggcgacggtggtggacaCcggggtgccctgtggctgtg	19	10	0	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_015347	exon10	c.G1990T	p.V664L	TGGACACCGGGGT		27	3	0.11	26	0	0				6	0	0				A	130921452	C	A	130921452	3	1	127	1	0	0	0	0	1	0	0	0	13412	507	18	3	1208	3	RIMBP2	12	130921452	Missense_Mutation	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	7879482	130921452	2930443	77	9303											
POLE	5426	mdanderson.org	37	chr12	133218311	133218311	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaccacccgtgatcatgtccTccagggaggcctgctggatc	12	14	1	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_006231	exon39	c.A5300G	p.E1767G	ATGTCCTCCAGGG		28	3	0.11	34	0	0				111	1	0.01				C	133218311	T	C	133218311	3	2	127	1	0	0	0	0	1	0	0	0	12243	1551	54	4	1604	4	POLE	12	133218311	Missense_Mutation	SNP	T	TCGA-XY-A8S2-01A-11D-A435-10	2296859	133218311	633584	78	9304											
CUL4A	8451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	113897455	113897455	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcatcaacaagagacccaaCaagcctgcagaactgatcgg	8	12	2	3	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001008895	exon11	c.C1209G	p.N403K	ACCCAACAAGCCT		64	18	0.28	68	0	0				108	55	0.51				G	113897455	C	G	113897455	3	3	127	1	0	0	0	0	1	0	0	0	4080	477	17	5	1251	5	CUL4A	13	113897455	Missense_Mutation	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10		113897455	1272423	79	9305											
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	45665475	45665475	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctcttagacttccgcaggAaggaaaaggaacctgtattc	9	9	1	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_020937	exon21	c.A5441T	p.E1814V	CGCAGGAAGGAAA		128	25	0.2	131	0	0				18	0	0				T	45665475	A	T	45665475	3	4	127	1	0	0	0	0	1	0	0	0	5703	246	9	5	5523	5	FANCM	14	45665475	Missense_Mutation	SNP	A	TCGA-XY-A8S2-01A-11D-A435-10		45665475	61684065	80	9306											
CCDC88C	440193	mdanderson.org	37	chr14	91780051	91780051	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcagctccaggttctctgcGtccagctgcttgttgtcacg	11	14	2	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001080414	exon15	c.C2109A	p.D703E	CTCTGCGTCCAGC		45	3	0.07	37	0	0				39	0	0				T	91780051	G	T	91780051	3	4	127	1	0	0	0	0	1	0	0	0	2885	1136	40	1	4041	1	CCDC88C	14	91780051	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	46114576	91780051	15569489	81	9307											
SERPINA9	327657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	94933616	94933616	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaccccaaaagcgaactgCtctttctggtgcatcatggg	9	13	3	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_175739	exon3	c.G786A	p.E262E	GAACTGCTCTTTC		68	14	0.21	73	0	0				0	0					T	94933616	C	T	94933616	2	4	127	1	0	0	0	0	0	0	0	1	14148	796	28	2		2	SERPINA9	14	94933616	Silent	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	3153565	94933616	12415924	82	9308											
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	105415680	105415680	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gcagaagggggctgaatgctGaggtcagtggtcttcaggtc	17	7	3	3	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_138420	exon7	c.C6108A	p.L2036L	AATGCTGAGGTCA		68	36	0.53	85	0	0				1	0	0				T	105415680	G	T	105415680	2	4	127	1	0	0	0	0	0	0	0	1	412	1277	45	3		3	AHNAK2	14	105415680	Silent	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	10482064	105415680	1933860	83	9309											
RYR3	6263	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr15	33895565	33895565	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atggacttcacctttggtcaGgtgagtaccttgctaaagct	10	9	2	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	RYR3	NM_001243996	exon18	c.G2164C	p.G722R	TGGTCAGGTGAGT		93	16	0.17	70	0	0		760		0	0					C	33895565	G	C	33895565	5	2	127	1	0	0	0	0	0	0	1	0	13821	1014	35	5	2234	5	RYR3	15	33895565	Splice_Site	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10		33895565	68635827	84	9310											
FAM98B	283742	bcgsc.ca	37	chr15	38776809	38776809	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagatccatatggaggaggTggtggtggtggtggtggtgg	23	2	0	1	rs374461368		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	FAM98B	NM_173611	exon8	c.T1251A	p.G417G	AGGAGGTGGTGGT		109	6	0.06	80	1	0.0125		53		0	0					A	38776809	T	A	38776809	3	1	127	1	0	0	0	0	1	0	0	0	5689	1683	59	5	1377	5	FAM98B	15	38776809	Missense_Mutation	SNP	T	TCGA-XY-A8S2-01A-11D-A435-10	4881244	38776809	63754583	85	9311											
RASGRP1	10125	broad.mit.edu	37	chr15	38800149	38800149	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cactctccataggctcgccgGtaattgtcgtagtttctgga	10	11	2	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	RASGRP1	NM_001128602	exon9	c.C1020A	p.Y340X	TCGCCGGTAATTG		108	3	0.03	90	0	0		50		10	0	0				T	38800149	G	T	38800149	4	4	127	1	0	0	0	0	0	1	0	0	13125	1256	44	3	1409	3	RASGRP1	15	38800149	Nonsense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	23340	38800149	63731243	86	9312											
PLA2G4F	255189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	42446574	42446574	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcattccactcggggtcactGcagttggccactatcctagt	9	13	2	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_213600	exon3	c.C267T	p.C89C	GTCACTGCAGTTG		72	10	0.14	51	0	0				4	1	0.25				A	42446574	G	A	42446574	2	1	127	1	0	0	0	0	0	0	0	1	12053	1311	46	2		2	PLA2G4F	15	42446574	Silent	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	3646425	42446574	60084818	87	9313											
EID1	23741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	49170473	49170473	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	accttccgcagatggaggtaGgcagcgggagccgggagcta	17	10	0	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_014335	exon1	c.G100C	p.G34R	GAGGTAGGCAGCG		45	11	0.24	33	0	0				217	22	0.1				C	49170473	G	C	49170473	3	2	127	1	0	0	0	0	1	0	0	0	5012	1000	35	5	102	5	EID1	15	49170473	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	6723899	49170473	53360919	88	9314											
EEF2K	29904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	22268122	22268122	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggacagaccgggcaagccCctcttccacctggagcacta	10	15	1	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_013302	exon7	c.C672T	p.P224P	CAAGCCCCTCTTC		57	21	0.37	75	0	0				23	15	0.65				T	22268122	C	T	22268122	2	4	127	1	0	0	0	0	0	0	0	1	4956	610	22	3		3	EEF2K	16	22268122	Silent	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10		22268122	68086631	89	9315											
ARHGAP17	55114	mdanderson.org	37	chr16	24942406	24942406	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcactgggcaatgccatGgggttgggagggccctggct	17	10	1	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001006634	exon19	c.C2214A	p.P738P	TGCCATGGGGTTG		46	3	0.07	47	0	0				95	0	0				T	24942406	G	T	24942406	2	4	127	1	0	0	0	0	0	0	0	1	864	1335	47	3		3	ARHGAP17	16	24942406	Silent	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	2674284	24942406	65412347	90	9316											
PRSS36	146547	mdanderson.org	37	chr16	31159768	31159768	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cagcaggcggtgccgtgcacGaagcggtgtgaggcgcgggg	21	10	0	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001258290	exon5	c.C501A	p.F167L	GTGCACGAAGCGG		9	6	0.67	8	0	0				0	0					T	31159768	G	T	31159768	3	4	127	1	0	0	0	0	1	0	0	0	12673	1049	37	1	2110	1	PRSS36	16	31159768	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	6217362	31159768	59194985	91	9317											
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	72992565	72992565	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atccaactcgcttggaaagaGtcctttgcaaccctcgtctt	7	13	1	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_006885	exon2	c.C1480G	p.L494V	GAAAGAGTCCTTT		79	33	0.42	85	0	0				1	0	0				C	72992565	G	C	72992565	3	2	127	1	0	0	0	0	1	0	0	0	17691	1029	36	5	9667	5	ZFHX3	16	72992565	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	41832797	72992565	17362188	92	9318											
ELAC2	60528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	12921085	12921085	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacccgctgccaccacctgCaggtacacggtgtttgggcc	11	16	0	0	rs370459638		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001165962	exon1	c.G180A	p.L60L	CACCTGCAGGTAC		53	10	0.19	46	0	0				89	32	0.36				T	12921085	C	T	12921085	2	4	127	1	0	0	0	0	0	0	0	1	5075	697	25	2		2	ELAC2	17	12921085	Silent	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10		12921085	68274125	93	9319											
TUBG2	27175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	40817522	40817522	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacaacacagccctgaaccGgattgccacagaccgcctgc	10	16	0	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_016437	exon7	c.G635A	p.R212Q	TGAACCGGATTGC		141	8	0.06	100	0	0				69	4	0.06				A	40817522	G	A	40817522	3	1	127	1	0	0	0	0	1	0	0	0	16826	1116	39	1	661	1	TUBG2	17	40817522	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	27896437	40817522	40377688	94	9320											
NMT1	4836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	43173564	43173564	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgcttatttctttacagctAaaagaactgtacaccctcct	4	12	1	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	NMT1,NS,carcinoma,0,1	NMT1	NM_021079	exon5	c.A507T	p.L169L	ACAGCTAAAAGAA		101	16	0.16	76	0	0		0	1	182	47	0.26				T	43173564	A	T	43173564	2	4	127	1	0	0	0	0	0	0	0	1	10549	349	13	5		5	NMT1	17	43173564	Silent	SNP	A	TCGA-XY-A8S2-01A-11D-A435-10	2356042	43173564	38021646	95	9321											
HEXIM1	0	broad.mit.edu	37	chr17	43229647	43229648	+	RNA	INS	-	-	A													tagaccctttttctttatttINSttttttttttttgagacgga					rs141039553	bycluster;by1000genomes	TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	HEXIM1	.	.	.	.	TTTATTTTTTTTT		7	5	0.71	6	0	0		25		0	0					A	43229648	-	A	43229647	6	5	127	0	1	1	1	0	0	0	0	0	7116	1856	64	0		0	HEXIM1	17	43229647	RNA	INS	-	TCGA-XY-A8S2-01A-11D-A435-10	56083	43229647	37965563	96	9322											
LRRC37A2	474170	broad.mit.edu	37	chr17	44627781	44627781	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgtgtttttttttttagCtcaaaaaagaagttccagga	8	4	1	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	LRRC37A2	NM_001006607	exon10	c.C4705T	p.L1569F	TTTTAGCTCAAAA		203	9	0.04	151	3	0.0198675497		37		6	0	0				T	44627781	C	T	44627781	5	4	127	1	0	0	0	0	0	0	1	0	9036	811	28	2	4743	2	LRRC37A2	17	44627781	Splice_Site	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	1398134	44627781	36567429	97	9323											
EPN3	55040	mdanderson.org	37	chr17	48614207	48614207	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgggtggcccaccagtgccGcgagaacctctacaccatcc	11	17	1	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	EPN3,mouth,carcinoma,0,1	EPN3	NM_017957	exon2	c.G290T	p.R97L	AGTGCCGCGAGAA		53	3	0.06	43	0	0		0	1	1	0	0				T	48614207	G	T	48614207	3	4	127	1	0	0	0	0	1	0	0	0	5215	1087	38	1	292	1	EPN3	17	48614207	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	3986426	48614207	32581003	98	9324											
SPAG9	9043	ucsc.edu	37	chr17	49124780	49124780	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tctagttgatcactccctgaGagctgatgaagttttgttct	9	8	3	4	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	SPAG9	NM_001130528	exon4	c.C546T	p.L182L	CCCTGAGAGCTGA		36	4	0.11	37	0	0		151		43	0	0				A	49124780	G	A	49124780	2	1	127	1	0	0	0	0	0	0	0	1	15040	929	33	3		3	SPAG9	17	49124780	Silent	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	510573	49124780	32070430	99	9325											
MKS1	54903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	56293605	56293605	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tggtacagatctacttcaaaCtgaggttaccataaggaaac	8	8	2	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001165927	exon5	c.232-1G>C	.	TTCAAACTGAGGT		40	11	0.28	35	0	0				0	0					G	56293605	C	G	56293605	5	3	127	1	0	0	0	0	0	0	1	0	9656	579	20	5	1478	5	MKS1	17	56293605	Splice_Site	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	7168825	56293605	24901605	100	9326											
MARCH10	162333	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	60814457	60814457	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccctcctacagtggtggGtgtgagtggtggccccgaga	17	10	0	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	MARCH10	NM_001100875	exon6	c.C772A	p.P258T	TGGTGGGTGTGAG		168	46	0.27	180	1	0.0055555556		102		0	0					T	60814457	G	T	60814457	3	4	127	1	0	0	0	0	1	0	0	0	9348	1261	44	3	1678	3	MARCH10	17	60814457	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	4520852	60814457	20380753	101	9327											
GPS1	2873	mdanderson.org	37	chr17	80012851	80012851	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaccccagagattgccgaGgtacgggccacctcctcaga	10	16	1	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_212492	exon5	c.G807T	p.E269D	TGCCGAGGTACGG		50	3	0.06	52	0	0				542	0	0				T	80012851	G	T	80012851	3	4	127	1	0	0	0	0	1	0	0	0	6772	1014	35	3	874	3	GPS1	17	80012851	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	19198394	80012851	1182359	102	9328											
NAPG	8774	mdanderson.org	37	chr18	10526105	10526105	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctgactgtggagatggcGgctcagaagataaacgaggg	16	7	1	4	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	NAPG,NS,carcinoma,+2,1	NAPG	NM_003826	exon1	c.G6T	p.A2A	GATGGCGGCTCAG		27	3	0.11	41	0	0		2	1	35	0	0				T	10526105	G	T	10526105	2	4	127	1	0	0	0	0	0	0	0	1	10211	1103	39	1		1	NAPG	18	10526105	Silent	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10		10526105	67551143	103	9329											
NEDD4L	23327	bcgsc.ca	37	chr18	56057876	56057876	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccttctgcctctgttcatAggctgtgctactcatggacg	10	12	4	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	NEDD4L	NM_015277	exon28	c.2596-2A>G	.	GTTCATAGGCTGT		60	4	0.07	82	0	0		126		1	0	0				G	56057876	A	G	56057876	5	3	127	1	0	0	0	0	0	0	1	0	10357	434	15	4	2796	4	NEDD4L	18	56057876	Splice_Site	SNP	A	TCGA-XY-A8S2-01A-11D-A435-10	45531771	56057876	22019372	104	9330											
POLRMT	5442	mdanderson.org	37	chr19	619021	619021	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accttggagtccaggcgataGggctggatgacggggacgcc	17	10	0	1	rs14155	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	POLRMT,colon,carcinoma,0,2	POLRMT	NM_005035	exon15	c.C3243A	p.P1081P	GCGATAGGGCTGG		73	3	0.04	69	0	0		0	2	86	0	0				T	619021	G	T	619021	2	4	127	1	0	0	0	0	0	0	0	1	12285	987	35	3		3	POLRMT	19	619021	Silent	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10		619021	58509962	105	9331											
PCSK4	54760	mdanderson.org	37	chr19	1482101	1482101	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agaccctcagcgcgggcgccGccgtgtgcccaggcccagcg	15	18	1	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_017573	exon15	c.C1925T	p.A642V	GGCGCCGCCGTGT		12	2	0.17	12	0	0				22	0	0				A	1482101	G	A	1482101	3	1	127	1	0	0	0	0	1	0	0	0	11648	1087	38	1	346	1	PCSK4	19	1482101	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	863080	1482101	57646882	106	9332											
LONP1	9361	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	5696679	5696690	+	In_Frame_Del	DEL	ACCTCGTCGATG	ACCTCGTCGATG	-													ctccgggcctctccgcacgcAcctcgtcgatgaggatcagg					novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	ACCTCGTCGATG	ACCTCGTCGATG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_004793	exon11	c.1765_1773del	p.589_591del	GCACGCACCTCGT		37	10	0.27	57	0	0				5	0	0				-	5696690	ACCTCGTCGATG	-	5696679	7	5	127	1	0	1	0	1	0	0	0	0	8936	173	6	0	1136	0	LONP1	19	5696679	In_Frame_Del	DEL	ACCTCGTCGATG	TCGA-XY-A8S2-01A-11D-A435-10	4214578	5696679	53432304	107	9333											
ZNF358	140467	mdanderson.org	37	chr19	7585369	7585369	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccgctgcagctgcagcagCggccgccggcctgggcctcg	17	17	0	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_018083	exon2	c.C1241T	p.A414V	CAGCAGCGGCCGC		29	2	0.07	27	0	0				15	0	0				T	7585369	C	T	7585369	3	4	127	1	0	0	0	0	1	0	0	0	17923	768	27	1	1243	1	ZNF358	19	7585369	Missense_Mutation	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	1888690	7585369	51543614	108	9334											
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	15284960	15284960	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtaagggaagaccatggccTggccgtgcgcgtccaggcgg	18	11	0	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_000435	exon25	c.A4655G	p.Q1552R	ATGGCCTGGCCGT		25	9	0.36	31	0	0				63	25	0.4				C	15284960	T	C	15284960	3	2	127	1	0	0	0	0	1	0	0	0	10596	1580	55	4	2346	4	NOTCH3	19	15284960	Missense_Mutation	SNP	T	TCGA-XY-A8S2-01A-11D-A435-10	7699591	15284960	43844023	109	9335											
SLC7A9	11136	mdanderson.org	37	chr19	33353095	33353095	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	acagacagctgggcgccctcGaaagaattatcaaaattctt	8	10	2	2	rs372980958	alternate_allele	TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	SLC7A9,NS,carcinoma,0,2	SLC7A9	NM_001243036	exon6	c.C633A	p.F211L	GCCCTCGAAAGAA		29	3	0.1	34	0	0		0	2	1	0	0				T	33353095	G	T	33353095	3	4	127	1	0	0	0	0	1	0	0	0	14759	1049	37	1	862	1	SLC7A9	19	33353095	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	18068135	33353095	25775888	110	9336											
SIPA1L3	23094	broad.mit.edu	37	chr19	38684282	38684282	+	Frame_Shift_Del	DEL	C	C	-													ctggcctagagccagggctgCccagcgacgtgctcttcacc					novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	SIPA1L3	NM_015073	exon18	c.4702delC	p.P1568fs	GGGCTGCCCAGCG		6	2	0.33	9	0	0		150		5	0	0				-	38684282	C	-	38684282	7	5	127	1	0	1	0	1	0	0	0	0	14385	739	26	0	4764	0	SIPA1L3	19	38684282	Frame_Shift_Del	DEL	C	TCGA-XY-A8S2-01A-11D-A435-10	5331187	38684282	20444701	111	9337											
B3GNT8	374907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	41932344	41932344	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cagcaagaagcggcggaggtCcttggggtaggaggcgaagt	19	7	0	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_198540	exon3	c.G340A	p.D114N	GGAGGTCCTTGGG		49	23	0.47	54	0	0				3	2	0.67				T	41932344	C	T	41932344	3	4	127	1	0	0	0	0	1	0	0	0	1261	855	30	3	857	3	B3GNT8	19	41932344	Missense_Mutation	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	3248062	41932344	17196639	112	9338											
ARHGAP35	2909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	47422321	47422321	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	caagcttgcatcagctgaaaAactcatgtacttttgcactg	7	10	2	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_004491	exon1	c.A389T	p.K130I	CTGAAAAACTCAT		77	25	0.32	91	0	0				18	7	0.39				T	47422321	A	T	47422321	3	4	127	1	0	0	0	0	1	0	0	0	6835	14	1	5	391	5	ARHGAP35	19	47422321	Missense_Mutation	SNP	A	TCGA-XY-A8S2-01A-11D-A435-10	5489977	47422321	11706662	113	9339											
TRPM4	54795	mdanderson.org	37	chr19	49699839	49699839	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccggtgaccatcttcatgGgcaacgtggtcagctacctg	12	13	3	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_017636	exon17	c.G2353T	p.G785C	TTCATGGGCAACG		12	2	0.17	13	0	0				2	0	0				T	49699839	G	T	49699839	3	4	127	1	0	0	0	0	1	0	0	0	16648	1232	43	3	2419	3	TRPM4	19	49699839	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	2277518	49699839	9429144	114	9340											
RPL13A	23521	mdanderson.org	37	chr19	49994344	49994344	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaaggtcgtgcgtctgaaGcctacaagaaaggtgagtcc	12	10	2	3	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_012423	exon6	c.G390T	p.K130N	TCTGAAGCCTACA		35	3	0.09	33	0	0				2619	0	0				T	49994344	G	T	49994344	3	4	127	1	0	0	0	0	1	0	0	0	13611	962	34	2	412	2	RPL13A	19	49994344	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	294505	49994344	9134639	115	9341											
KCNC3	3748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	50826601	50826601	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gccaaagttgttgacaatgaCgggcacaggcatggcgatgg	15	8	0	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_004977	exon2	c.G1609T	p.V537F	CAATGACGGGCAC		41	12	0.29	43	0	0				3	1	0.33				A	50826601	C	A	50826601	3	1	127	1	0	0	0	0	1	0	0	0	8059	536	19	1	676	1	KCNC3	19	50826601	Missense_Mutation	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	832257	50826601	8302382	116	9342											
NECAB3	63941	mdanderson.org	37	chr20	32247754	32247754	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actcctcagggctcggcgtcCtgcccgccggctgccgcaga	13	18	1	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_031231	exon7	c.G580A	p.G194R	GGCGTCCTGCCCG		30	3	0.1	22	0	0				26	0	0				T	32247754	C	T	32247754	3	4	127	1	0	0	0	0	1	0	0	0	10352	690	24	3	634	3	NECAB3	20	32247754	Missense_Mutation	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10		32247754	30777766	117	9343											
ZMYND8	23613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	45905062	45905062	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cccgcacggagctgacctgtGctcttatccaggaagtccat	10	14	1	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	ZMYND8_ENST00000536340,NS,carcinoma,-2,2	ZMYND8_ENST00000536340	NM_183047	exon11	c.C1476G	p.S492R	ACCTGTGCTCTTA		37	10	0.27	28	0	0		-2	2	171	65	0.38				C	45905062	G	C	45905062	3	2	127	1	0	0	0	0	1	0	0	0	17768	1310	46	5	2142	5	ZMYND8	20	45905062	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	13657308	45905062	17120458	118	9344											
CYP24A1	1591	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	52789455	52789455	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggattggactcacaggatcaGcagcccgtagccttctttgc	11	12	3	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	CYP24A1	NM_000782	exon2	c.C442A	p.L148M	GGATCAGCAGCCC		43	4	0.09	53	0	0		75		0	0					T	52789455	G	T	52789455	3	4	127	1	0	0	0	0	1	0	0	0	4177	962	34	2	1142	2	CYP24A1	20	52789455	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	6884393	52789455	10236065	119	9345											
BAGE2	85319	broad.mit.edu	37	chr21	11050075	11050077	+	RNA	DEL	GTT	GTT	-													aagagacaaaattaagaaacGttaatatcaattagactaag					novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	GTT	GTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	.	.	.	.	AGAAACGTTAATA		6	2	0.33	5	0	0				0	0					-	11050077	GTT	-	11050075	6	5	127	0	1	1	0	1	0	0	0	0	1290	1160	40	0		0	BAGE2	21	11050075	RNA	DEL	GTT	TCGA-XY-A8S2-01A-11D-A435-10		11050075	37079820	120	9346											
ITGB2	3689	mdanderson.org	37	chr21	46311735	46311735	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcctcacctgcagatgccGcactccaagaagcccttgcc	8	19	1	2	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_000211	exon11	c.C1401A	p.C467X	GATGCCGCACTCC		22	2	0.09	30	0	0				151	0	0				T	46311735	G	T	46311735	4	4	127	1	0	0	0	0	0	1	0	0	7937	1079	38	1	932	1	ITGB2	21	46311735	Nonsense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	35261660	46311735	1818160	121	9347											
ZNF280B	140883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	22842853	22842853	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cccttctcctttatgctgtcCatagtaaaagtcactaagta	5	11	2	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_080764	exon4	c.G871C	p.G291R	GCTGTCCATAGTA		64	22	0.34	80	0	0				14	7	0.5				G	22842853	C	G	22842853	3	3	127	1	0	0	0	0	1	0	0	0	17872	603	21	5	764	5	ZNF280B	22	22842853	Missense_Mutation	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10		22842853	28461713	122	9348											
SLC2A11	66035	mdanderson.org	37	chr22	24224967	24224967	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtacgcctacgcctcctccGtgttccggaaggcaggagtg	13	13	0	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_030807	exon9	c.G916T	p.V306L	TCCTCCGTGTTCC		43	3	0.07	44	0	0				6	0	0				T	24224967	G	T	24224967	3	4	127	1	0	0	0	0	1	0	0	0	14594	1145	40	1	1005	1	SLC2A11	22	24224967	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	1382114	24224967	27079599	123	9349											
MN1	4330	mdanderson.org	37	chr22	28196364	28196364	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcccaagatcgggggttcGcccagcgcgctcatagcagg	14	13	1	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_002430	exon1	c.C168A	p.G56G	GGGTTCGCCCAGC		36	3	0.08	40	0	0				16	0	0				T	28196364	G	T	28196364	2	4	127	1	0	0	0	0	0	0	0	1	9721	1074	38	1		1	MN1	22	28196364	Silent	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	3971397	28196364	23108202	124	9350											
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	31950249	31950249	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gctcttttccaggttcaagtGggatactagcaatgttatct	9	8	3	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_004006	exon46	c.C6710G	p.P2237R	TCAAGTGGGATAC		76	14	0.18	68	0	0				0	0					C	31950249	G	C	31950249	3	2	127	1	0	0	0	0	1	0	0	0	4608	1348	47	5	4631	5	DMD	23	31950249	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10		31950249	123320311	125	9351											
ZXDA	7789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	57936054	57936054	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagcgcctcggggcacagGtacagcaccacgcctggacc	12	17	0	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_007156	exon1	c.C801T	p.Y267Y	GCACAGGTACAGC		68	24	0.35	68	0	0				2	2	1				A	57936054	G	A	57936054	2	1	127	1	0	0	0	0	0	0	0	1	18289	1256	44	3		3	ZXDA	23	57936054	Silent	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	25985805	57936054	97334506	126	9352											
SASH3	54440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	128925040	128925040	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatgaacttccggtgctcaGccgccaggcatcaacaggtg	12	13	2	1	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_018990	exon4	c.G425A	p.S142N	TGCTCAGCCGCCA		233	100	0.43	189	0	0				18	0	0				A	128925040	G	A	128925040	3	1	127	1	0	0	0	0	1	0	0	0	13901	971	34	2	439	2	SASH3	23	128925040	Missense_Mutation	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	70988986	128925040	26345520	127	9353											
GPC3	2719	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	133119396	133119396	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggcgtccggcggcggcggCgggggctgcgcctgtcccgg	22	14	0	0	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	GPC3	NM_001164617	exon1	c.G81C	p.P27P	CGGCGGCGGGGGC		151	7	0.05	110	2	0.0181818182		88		32	0	0				G	133119396	C	G	133119396	2	3	127	1	0	0	0	0	0	0	0	1	6638	755	27	5		5	GPC3	23	133119396	Silent	SNP	C	TCGA-XY-A8S2-01A-11D-A435-10	4194356	133119396	22151164	128	9354											
MAGEC1	9947	broad.mit.edu	37	chrX	140994639	140994641	+	In_Frame_Del	DEL	CTC	CTC	-													cctctccagattcctgtgagCtcctcctcctcctcctccac					novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	CTC	CTC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	MAGEC1	NM_005462	exon4	c.1449_1451del	p.483_484del	TGTGAGCTCCTCC		197	8	0.04	158	0	0		317		0	0					-	140994641	CTC	-	140994639	7	5	127	1	0	1	0	1	0	0	0	0	9229	796	28	0	1455	0	MAGEC1	23	140994639	In_Frame_Del	DEL	CTC	TCGA-XY-A8S2-01A-11D-A435-10	7875243	140994639	14275921	129	9355											
HMGB3	3149	mdanderson.org	37	chrX	150156360	150156360	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagaggaggaggaagaagaGgaggaggaggaggaggagga	24	0	0	3	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_005342	exon5	c.G576A	p.E192E	AGAAGAGGAGGAG		24	2	0.08	11	0	0				196	2	0.01				A	150156360	G	A	150156360	2	1	127	1	0	0	0	0	0	0	0	1	7267	991	35	3		3	HMGB3	23	150156360	Silent	SNP	G	TCGA-XY-A8S2-01A-11D-A435-10	9161721	150156360	5114200	130	9356											
MAN1C1	57134	mdanderson.org	37	chr1	25944310	25944310	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcatgaggaaagtgcccGgcttcgtcccggcctccccg	12	16	1	1	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_020379	exon1	c.G22T	p.G8C	GTGCCCGGCTTCG		46	3	0.07	55	0	0				111	0	0				T	25944310	G	T	25944310	3	4	128	1	0	0	0	0	1	0	0	0	9262	1116	39	1	24	1	MAN1C1	1	25944310	Missense_Mutation	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10		25944310	223306311	1	9357											
MAP3K6	9064	broad.mit.edu;ucsc.edu	37	chr1	27686379	27686379	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgcacgatgtggttgtcGtgcaagtagccaagtccctg	13	10	0	0	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	MAP3K6	NM_004672	exon17	c.C2289A	p.H763Q	GTTGTCGTGCAAG		80	11	0.14	86	1	0.011627907		134		16	0	0				T	27686379	G	T	27686379	3	4	128	1	0	0	0	0	1	0	0	0	9303	1136	40	1	1629	1	MAP3K6	1	27686379	Missense_Mutation	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10	1742069	27686379	221564242	2	9358											
PRPF38B	55119	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	109242141	109242142	+	Frame_Shift_Del	DEL	AG	AG	-													agaggaaatgaacgagaaaaAgagagagagcgatcaagaga					novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	AG	AG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	PRPF38B,colon,carcinoma,0,1	PRPF38B	NM_018061	exon6	c.1139_1140del	p.380_380del	AGAAAAAGAGAGA		81	23	0.28	94	0	0		55		193	0	0				-	109242142	AG	-	109242141	7	5	128	1	0	1	0	1	0	0	0	0	12619	69	3	0	1162	0	PRPF38B	1	109242141	Frame_Shift_Del	DEL	AG	TCGA-XY-A8S3-01B-11D-A435-10	81555762	109242141	140008480	3	9359											
NBPF16	728936	hgsc.bcm.edu	37	chr1	148579688	148579688	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gagaagcttgcagagcagctCaagcaagctgaggagctcag	14	9	2	3	rs202153254	bycluster	TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	NBPF15,face,carcinoma,+2,1	NBPF15	NM_001102663	exon3	c.C258G	p.L86L	GCAGCTCAAGCAA		32	4	0.13	33	0	0	0.001	2	1	8	0	0				G	148579688	C	G	148579688	2	3	128	1	0	0	0	0	0	0	0	1	10243	813	29	5		5	NBPF16	1	148579688	Silent	SNP	C	TCGA-XY-A8S3-01B-11D-A435-10	39337547	148579688	100670933	4	9360											
OR6K6	128371	broad.mit.edu	37	chr1	158725536	158725536	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttttgttatccttgctcccTttttcaaccccatcatctat	2	14	3	0	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	OR6K6	NM_001005184	exon1	c.T931C	p.F311L	GCTCCCTTTTTCA		168	4	0.02	174	0	0		81		0	0					C	158725536	T	C	158725536	3	2	128	1	0	0	0	0	1	0	0	0	11250	1609	56	4	933	4	OR6K6	1	158725536	Missense_Mutation	SNP	T	TCGA-XY-A8S3-01B-11D-A435-10	10145848	158725536	90525085	5	9361											
FMN2	56776	broad.mit.edu	37	chr1	240371139	240371139	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcccggagcgggcataccCcctcctccccctcttcccgg	8	22	1	0	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	FMN2	NM_020066	exon5	c.C3027T	p.P1009P	CATACCCCCTCCT		103	5	0.05	101	1	0.0099009901		451		0	0					T	240371139	C	T	240371139	2	4	128	1	0	0	0	0	0	0	0	1	5982	610	22	3		3	FMN2	1	240371139	Silent	SNP	C	TCGA-XY-A8S3-01B-11D-A435-10	81645603	240371139	8879482	6	9362											
NEK10	152110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	27326130	27326130	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttatcccccaacataatgttGtttggtgtcagatctctatg	7	9	2	1	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	NEK10_ENST00000429845,NS,lymphoid_neoplasm,0,3	NEK10_ENST00000429845	NM_199347	exon23	c.C1977G	p.N659K	AATGTTGTTTGGT		111	27	0.24	73	0	0		0	3	1	0	0				C	27326130	G	C	27326130	3	2	128	1	0	0	0	0	1	0	0	0	10368	1368	48	5	173	5	NEK10	3	27326130	Missense_Mutation	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10		27326130	170696300	7	9363											
BSN	8927	mdanderson.org	37	chr3	49691578	49691578	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccactccatcacctatggTagcccagggtacacaaacac	6	17	1	0	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_003458	exon5	c.T4589C	p.V1530A	CTATGGTAGCCCA		45	3	0.07	50	0	0				7	0	0				C	49691578	T	C	49691578	3	2	128	1	0	0	0	0	1	0	0	0	1532	1638	57	4	4607	4	BSN	3	49691578	Missense_Mutation	SNP	T	TCGA-XY-A8S3-01B-11D-A435-10	22365448	49691578	148330852	8	9364											
IGSF10	285313	mdanderson.org	37	chr3	151166918	151166918	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgatttcagggatgagtcaAtggttggcttggcacactgg	14	6	2	2	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_178822	exon4	c.T851C	p.I284T	GAGTCAATGGTTG		58	3	0.05	92	0	0				0	0					G	151166918	A	G	151166918	3	3	128	1	0	0	0	0	1	0	0	0	7640	101	4	4	7080	4	IGSF10	3	151166918	Missense_Mutation	SNP	A	TCGA-XY-A8S3-01B-11D-A435-10	101475340	151166918	46855512	9	9365											
TTC14	151613	mdanderson.org	37	chr3	180320160	180320160	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccgtagcctcctggggtcGgccgccgagccagcccgggg	16	16	0	0	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_001042601	exon1	c.G111T	p.S37S	GGGGTCGGCCGCC		38	3	0.08	30	0	0				11	0	0				T	180320160	G	T	180320160	2	4	128	1	0	0	0	0	0	0	0	1	16742	1103	39	1		1	TTC14	3	180320160	Silent	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10	29153242	180320160	17702270	10	9366											
PAPD4	167153	mdanderson.org	37	chr5	78919198	78919198	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaacgaagatactcaatGccaccattgtttcatacaca	7	10	2	2	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_001114393	exon5	c.G351T	p.M117I	CTCAATGCCACCA		47	3	0.06	83	0	0				32	0	0				T	78919198	G	T	78919198	3	4	128	1	0	0	0	0	1	0	0	0	11470	1319	46	2	361	2	PAPD4	5	78919198	Missense_Mutation	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10		78919198	101996062	11	9367											
NR3C1	2908	bcgsc.ca	37	chr5	142779960	142779960	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccttctctgtgggggcagCagacacagcagtggatgctg	14	11	1	1	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	NR3C1	NM_001018077	exon2	c.G445A	p.A149T	GGGCAGCAGACAC		82	5	0.06	130	1	0.0076923077		124		1	0	0				T	142779960	C	T	142779960	3	4	128	1	0	0	0	0	1	0	0	0	10677	710	25	2	1975	2	NR3C1	5	142779960	Missense_Mutation	SNP	C	TCGA-XY-A8S3-01B-11D-A435-10	63860762	142779960	38135300	12	9368											
ARHGEF37	389337	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr5	149008389	149008389	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taggacatcgtgggtatgtgCcggctgggaaactacagctg	15	8	0	0	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_001001669	exon12	c.C1678T	p.P560S	TATGTGCCGGCTG		67	5	0.07	64	0	0				2	0	0				T	149008389	C	T	149008389	3	4	128	1	0	0	0	0	1	0	0	0	903	739	26	2	1720	2	ARHGEF37	5	149008389	Missense_Mutation	SNP	C	TCGA-XY-A8S3-01B-11D-A435-10	6228429	149008389	31906871	13	9369											
SERPINB6	5269	bcgsc.ca;mdanderson.org	37	chr6	2955761	2955761	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gagcaagtatgacttactgaGaggaaatcacaagacttttc	9	7	1	3	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	SERPINB6	NM_001271823	exon3	c.C366A	p.L122L	TACTGAGAGGAAA		78	5	0.06	67	0	0		31		380	0	0				T	2955761	G	T	2955761	2	4	128	1	0	0	0	0	0	0	0	1	14158	929	33	3		3	SERPINB6	6	2955761	Silent	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10		2955761	168159306	14	9370											
TREML4	285852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	41196569	41196569	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtcagcagacatctccaAgtcggtgtaccttacttgtc	10	11	2	1	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_198153	exon2	c.A181T	p.S61C	TCTCCAAGTCGGT		68	23	0.34	66	0	0				0	0					T	41196569	A	T	41196569	3	4	128	1	0	0	0	0	1	0	0	0	16534	72	3	5	187	5	TREML4	6	41196569	Missense_Mutation	SNP	A	TCGA-XY-A8S3-01B-11D-A435-10	38240808	41196569	129918498	15	9371											
ECT2L	345930	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	139175243	139175245	+	In_Frame_Del	DEL	GAA	GAA	-													taggaagctatgtggccactGaagaagaagggggtcacgtg					novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	GAA	GAA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	ECT2L	NM_001195037	exon9	c.1149_1151del	p.383_384del	GCCACTGAAGAAG		49	15	0.31	88	0	0		75		0	0					-	139175245	GAA	-	139175243	7	5	128	1	0	1	0	1	0	0	0	0	4928	1291	45	0	1180	0	ECT2L	6	139175243	In_Frame_Del	DEL	GAA	TCGA-XY-A8S3-01B-11D-A435-10	97978674	139175243	31939824	16	9372											
SYTL3	94120	broad.mit.edu	37	chr6	159183173	159183173	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taggagccaagaatttacctGtgcggccagatggcaccttg	12	10	0	2	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	SYTL3	NM_001242384	exon17	c.G1480T	p.V494L	TTACCTGTGCGGC		91	4	0.04	92	0	0		49		6	0	0				T	159183173	G	T	159183173	3	4	128	1	0	0	0	0	1	0	0	0	15540	1377	48	3	1318	3	SYTL3	6	159183173	Missense_Mutation	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10	20007930	159183173	11931894	17	9373											
SFRP1	6422	mdanderson.org	37	chr8	41166542	41166542	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtagaagcgcccgctctggTacgggccgatgtccgactgg	15	12	1	1	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_003012	exon1	c.A137G	p.Y46C	CTCTGGTACGGGC		38	3	0.08	18	0	0				6	0	0				C	41166542	T	C	41166542	3	2	128	1	0	0	0	0	1	0	0	0	14214	1638	57	4	819	4	SFRP1	8	41166542	Missense_Mutation	SNP	T	TCGA-XY-A8S3-01B-11D-A435-10		41166542	105197480	18	9374											
TIGD5	84948	mdanderson.org	37	chr8	144681631	144681631	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacccacctggcggctctgGcctacaagtgcctggctccg	11	17	2	0	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_032862	exon1	c.G1558T	p.A520S	GCTCTGGCCTACA		50	3	0.06	33	0	0				43	0	0				T	144681631	G	T	144681631	3	4	128	1	0	0	0	0	1	0	0	0	15958	1203	42	2	1560	2	TIGD5	8	144681631	Missense_Mutation	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10	103515089	144681631	1682391	19	9375											
BNC2	54796	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr9	16727865	16727865	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatgaaccctggttcagccGtagtcgttctggttccgaac	10	13	2	1	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_017637	exon3	c.C260T	p.T87M	TCAGCCGTAGTCG		145	10	0.07	128	0	0				21	5	0.24				A	16727865	G	A	16727865	3	1	128	1	0	0	0	0	1	0	0	0	1474	1145	40	1	3059	1	BNC2	9	16727865	Missense_Mutation	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10		16727865	124485566	20	9376											
LAMC3	10319	mdanderson.org	37	chr9	133936593	133936593	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggtggtgtgtacccactGccccccgggccagagaggta	16	12	0	1	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_006059	exon13	c.G2330A	p.C777Y	CCCACTGCCCCCC		21	3	0.14	21	0	0				45	0	0				A	133936593	G	A	133936593	3	1	128	1	0	0	0	0	1	0	0	0	8654	1319	46	2	2380	2	LAMC3	9	133936593	Missense_Mutation	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10	117208728	133936593	7276838	21	9377											
ZNF485	220992	mdanderson.org	37	chr10	44112810	44112810	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagaaagagccatgaaatGtagttagtgtggcaaattgt	11	3	0	3	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_145312	exon5	c.G1319T	p.C440F	TGAAATGTAGTTA		16	2	0.13	33	0	0				7	0	0				T	44112810	G	T	44112810	3	4	128	1	0	0	0	0	1	0	0	0	17994	1377	48	3	1333	3	ZNF485	10	44112810	Missense_Mutation	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10		44112810	91421937	22	9378											
ANK3	288	mdanderson.org	37	chr10	61815794	61815794	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatctctacactggtcaggGctgcaacagaaaatttgcaa	9	9	2	1	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	ANK3_ENST00000355288,NS,carcinoma,0,2	ANK3_ENST00000355288	NM_020987	exon42	c.C12687A	p.S4229R	GTCAGGGCTGCAA		22	3	0.14	41	0	0		0	2	17	0	0				T	61815794	G	T	61815794	3	4	128	1	0	0	0	0	1	0	0	0	618	1217	42	2	454	2	ANK3	10	61815794	Missense_Mutation	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10	17702984	61815794	73718953	23	9379											
JAKMIP3	282973	mdanderson.org	37	chr10	133955460	133955460	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agacggagctgaggttccggCagctgaccatggagtaccag	15	10	0	3	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_001105521	exon10	c.C1510T	p.Q504X	TTCCGGCAGCTGA		34	3	0.09	44	0	0				0	0					T	133955460	C	T	133955460	4	4	128	1	0	0	0	0	0	1	0	0	7985	711	25	2	1548	2	JAKMIP3	10	133955460	Nonsense_Mutation	SNP	C	TCGA-XY-A8S3-01B-11D-A435-10	72139666	133955460	1579287	24	9380											
ZNF511	118472	mdanderson.org	37	chr10	135123706	135123706	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggctgcacagagaagttcaaGaccagcagagaccggaagga	14	9	1	3	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_145806	exon4	c.G468T	p.K156N	GTTCAAGACCAGC		28	3	0.11	95	0	0				130	0	0				T	135123706	G	T	135123706	3	4	128	1	0	0	0	0	1	0	0	0	18011	933	33	3	482	3	ZNF511	10	135123706	Missense_Mutation	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10	1168246	135123706	411041	25	9381											
CALY	50632	mdanderson.org	37	chr10	135141480	135141480	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaaattctgctggtctgGggaggacagctggtattctg	16	6	3	0	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_015722	exon3	c.C175A	p.P59T	GGTCTGGGGAGGA		44	3	0.07	118	0	0				0	0					T	135141480	G	T	135141480	3	4	128	1	0	0	0	0	1	0	0	0	2613	1232	43	3	490	3	CALY	10	135141480	Missense_Mutation	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10	17774	135141480	393267	26	9382											
ARNTL	406	mdanderson.org	37	chr11	13407273	13407273	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagacattccttccagtgGcctactatcaggccaggctc	8	15	1	1	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_001178	exon19	c.G1652T	p.G551V	CCAGTGGCCTACT		43	3	0.07	47	0	0				30	0	0				T	13407273	G	T	13407273	3	4	128	1	0	0	0	0	1	0	0	0	966	1203	42	2	1725	2	ARNTL	11	13407273	Missense_Mutation	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10		13407273	121599243	27	9383											
NRXN2	9379	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr11	64375421	64375421	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcgcggcgggcgggggcagCgtgtcttgggtggcgcccac	21	13	1	0	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_015080	exon23	c.G4386A	p.T1462T	GGGCAGCGTGTCT		14	13	0.93	8	0	0				1	1	1				T	64375421	C	T	64375421	2	4	128	1	0	0	0	0	0	0	0	1	10713	755	27	1		1	NRXN2	11	64375421	Silent	SNP	C	TCGA-XY-A8S3-01B-11D-A435-10	50968148	64375421	70631095	28	9384											
ATG2A	23130	mdanderson.org	37	chr11	64680578	64680578	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catgtaccctgagcagctgcCgatctgcaaggggggctctg	14	12	2	1	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_015104	exon6	c.G757A	p.G253S	AGCTGCCGATCTG		41	3	0.07	59	0	0				14	0	0				T	64680578	C	T	64680578	3	4	128	1	0	0	0	0	1	0	0	0	1092	652	23	1	5203	1	ATG2A	11	64680578	Missense_Mutation	SNP	C	TCGA-XY-A8S3-01B-11D-A435-10	305157	64680578	70325938	29	9385											
KLHL35	283212	mdanderson.org	37	chr11	75139524	75139524	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgcggagagcacaggcggcGaattctgagcgagtgtagcc	16	9	1	2	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_001039548	exon2	c.C1029A	p.F343L	GGCGGCGAATTCT		16	3	0.19	21	0	0				25	0	0				T	75139524	G	T	75139524	3	4	128	1	0	0	0	0	1	0	0	0	8430	1049	37	1	742	1	KLHL35	11	75139524	Missense_Mutation	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10	10458946	75139524	59866992	30	9386											
NAALAD2	10003	broad.mit.edu;mdanderson.org	37	chr11	89891357	89891357	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaaggagtgggaatccccCgaatacctgtacatcccatt	9	11	0	1	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	NAALAD2,NS,carcinoma,0,2	NAALAD2	NM_005467	exon7	c.C841T	p.R281X	ATCCCCCGAATAC		88	4	0.05	99	0	0		113	2	28	0	0				T	89891357	C	T	89891357	4	4	128	1	0	0	0	0	0	1	0	0	10175	644	23	1	867	1	NAALAD2	11	89891357	Nonsense_Mutation	SNP	C	TCGA-XY-A8S3-01B-11D-A435-10	14751833	89891357	45115159	31	9387											
FAT3	120114	mdanderson.org	37	chr11	92616362	92616362	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccagagtgactccaggaGcaacctggataagatcgtgg	12	10	0	3	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_001008781	exon23	c.G12740T	p.S4247I	CCAGGAGCAACCT		33	3	0.09	48	0	0				0	0					T	92616362	G	T	92616362	3	4	128	1	0	0	0	0	1	0	0	0	5723	971	34	2	12830	2	FAT3	11	92616362	Missense_Mutation	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10	2725005	92616362	42390154	32	9388											
MLL	4297	broad.mit.edu	37	chr11	118391583	118391583	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaaaaagacttctaaggaGgcagttggtgtctacaggta	11	5	2	1	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	MLL	NM_001197104	exon34	c.G11496T	p.E3832D	TAAGGAGGCAGTT		262	5	0.02	373	0	0		548		13	0	0				T	118391583	G	T	118391583	3	4	128	1	0	0	0	0	1	0	0	0	9667	991	35	3	11621	3	MLL	11	118391583	Missense_Mutation	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10	25775221	118391583	16614933	33	9389											
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	88524340	88524340	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acctttttctttagacgtttGttctacagaaaaggacagga	8	7	2	2	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_025114	exon8	c.C498G	p.N166K	ACGTTTGTTCTAC		65	14	0.22	51	0	0				1	0	0				C	88524340	G	C	88524340	3	2	128	1	0	0	0	0	1	0	0	0	3275	1368	48	5	7129	5	CEP290	12	88524340	Missense_Mutation	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10		88524340	45327555	34	9390											
NDFIP2	54602	mdanderson.org	37	chr13	80055401	80055401	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcatgctcaatagcgcgcgCggcgccccggagcttctccg	13	16	2	0	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_019080	exon1	c.C63T	p.R21R	CGCGCGCGGCGCC		14	2	0.14	13	0	0				1	0	0				T	80055401	C	T	80055401	2	4	128	1	0	0	0	0	0	0	0	1	10292	755	27	1		1	NDFIP2	13	80055401	Silent	SNP	C	TCGA-XY-A8S3-01B-11D-A435-10		80055401	35114477	35	9391											
CILP	8483	mdanderson.org	37	chr15	65496896	65496896	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagtcagcattcacctggCccattgggcaggtcaggtca	11	13	4	0	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_003613	exon6	c.G629A	p.G210D	ACCTGGCCCATTG		37	3	0.08	59	0	0				0	0					T	65496896	C	T	65496896	3	4	128	1	0	0	0	0	1	0	0	0	3451	739	26	2	2941	2	CILP	15	65496896	Missense_Mutation	SNP	C	TCGA-XY-A8S3-01B-11D-A435-10		65496896	37034496	36	9392											
TCEB2	6923	ucsc.edu	37	chr16	2825543	2825543	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagtgtcttgccatcatcCaagagttggtcatcctgagg	10	12	3	2	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	TCEB2	NM_007108	exon3	c.G153A	p.L51L	ATCATCCAAGAGT		35	4	0.11	21	0	0		6		3290	0	0				T	2825543	C	T	2825543	3	4	128	1	0	0	0	0	1	0	0	0	15739	593	21	3	348	3	TCEB2	16	2825543	Missense_Mutation	SNP	C	TCGA-XY-A8S3-01B-11D-A435-10		2825543	87529210	37	9393											
NUDT16L1	84309	mdanderson.org	37	chr16	4743826	4743826	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgtgccacgccatgctgtaCgccgccaaccctgggcagct	11	17	0	0	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_001193452	exon1	c.C99T	p.Y33Y	GCTGTACGCCGCC		26	3	0.12	20	0	0				80	0	0				T	4743826	C	T	4743826	2	4	128	1	0	0	0	0	0	0	0	1	10780	547	19	1		1	NUDT16L1	16	4743826	Silent	SNP	C	TCGA-XY-A8S3-01B-11D-A435-10	1918283	4743826	85610927	38	9394											
PHKG2	5261	mdanderson.org	37	chr16	30764793	30764793	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	catcgagatctgaagcccgaGaatattctcctagatgacaa	8	10	2	5	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	PHKG2_ENST00000328273,colon,carcinoma,+2,1	PHKG2_ENST00000328273	NM_001172432	exon6	c.G471T	p.E157D	GCCCGAGAATATT		74	4	0.05	72	0	0		2	1	210	0	0				T	30764793	G	T	30764793	3	4	128	1	0	0	0	0	1	0	0	0	11894	933	33	3	489	3	PHKG2	16	30764793	Missense_Mutation	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10	26020967	30764793	59589960	39	9395											
ZNF646	9726	broad.mit.edu	37	chr16	31092943	31092943	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctttcacctgcccccattgTccccgccacttccgccgccg	6	23	1	0	rs200049061	bycluster	TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	ZNF646	NM_014699	exon2	c.T5298C	p.C1766C	CCATTGTCCCCGC		55	32	0.58	50	22	0.44		133		62	9	0.15				C	31092943	T	C	31092943	2	2	128	1	0	0	0	0	0	0	0	1	18118	1673	58	4		4	ZNF646	16	31092943	Silent	SNP	T	TCGA-XY-A8S3-01B-11D-A435-10	328150	31092943	59261810	40	9396											
MYBBP1A	10514	mdanderson.org	37	chr17	4443182	4443182	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgtctctggcaagaatcccTttttcttccgcttcttactg	6	13	3	1	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_014520	exon26	c.A3515G	p.K1172R	AATCCCTTTTTCT		23	2	0.09	25	0	0				451	0	0				C	4443182	T	C	4443182	3	2	128	1	0	0	0	0	1	0	0	0	10055	1609	56	4	515	4	MYBBP1A	17	4443182	Missense_Mutation	SNP	T	TCGA-XY-A8S3-01B-11D-A435-10		4443182	76752028	41	9397											
UBE2O	63893	mdanderson.org	37	chr17	74449144	74449144	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacgggggctgcggctgggGccgggactgcctccggggct	22	12	0	0	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_022066	exon1	c.C80A	p.A27D	GCTGGGGCCGGGA		16	2	0.13	11	0	0				3	0	0				T	74449144	G	T	74449144	3	4	128	1	0	0	0	0	1	0	0	0	16928	1203	42	2	3870	2	UBE2O	17	74449144	Missense_Mutation	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10	70005962	74449144	6746066	42	9398											
GALR1	2587	mdanderson.org	37	chr18	74962916	74962916	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaccgctacgtggccatcGtgcactcgcggcgctcctcc	12	17	0	0	rs375468486	alternate_allele	TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_001480	exon1	c.G412T	p.V138L	GCCATCGTGCACT		12	2	0.17	29	0	0				0	0					T	74962916	G	T	74962916	3	4	128	1	0	0	0	0	1	0	0	0	6266	1145	40	1	414	1	GALR1	18	74962916	Missense_Mutation	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10		74962916	3114332	43	9399											
AKAP8L	26993	mdanderson.org	37	chr19	15510124	15510124	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggttacctttccaccatGcggtctcgctgccgcttttt	9	14	1	0	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_014371	exon9	c.C1146A	p.R382R	CACCATGCGGTCT		77	4	0.05	55	0	0				301	0	0				T	15510124	G	T	15510124	2	4	128	1	0	0	0	0	0	0	0	1	455	1306	46	2		2	AKAP8L	19	15510124	Silent	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10		15510124	43618859	44	9400											
CAPNS1	826	mdanderson.org	37	chr19	36632054	36632054	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcggcggcggcggcggCggtggtggaggcggcggtgg	28	9	0	0	rs17879825		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_001749	exon2	c.C141T	p.G47G	CGGCGGCGGTGGT		32	4	0.13	56	2	0.0357142857	0.006			1	0	0				T	36632054	C	T	36632054	2	4	128	1	0	0	0	0	0	0	0	1	2651	755	27	1		1	CAPNS1	19	36632054	Silent	SNP	C	TCGA-XY-A8S3-01B-11D-A435-10	21121930	36632054	22496929	45	9401											
PSMC4	5704	mdanderson.org	37	chr19	40485823	40485823	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgcctggccaaggagaatgCacctgccatcatcttcatag	9	14	3	1	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	PSMC4,NS,carcinoma,-1,2	PSMC4	NM_006503	exon7	c.C773T	p.A258V	AGAATGCACCTGC		65	4	0.06	106	0	0		-1	2	1276	1	0				T	40485823	C	T	40485823	3	4	128	1	0	0	0	0	1	0	0	0	12737	710	25	2	799	2	PSMC4	19	40485823	Missense_Mutation	SNP	C	TCGA-XY-A8S3-01B-11D-A435-10	3853769	40485823	18643160	46	9402											
FOXA3	3171	mdanderson.org	37	chr19	46375770	46375770	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aactccattcgccactcgctGtctttcaacgactgcttcgt	6	15	2	0	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_004497	exon2	c.G507T	p.L169L	CTCGCTGTCTTTC		36	3	0.08	68	0	0				21	0	0				T	46375770	G	T	46375770	2	4	128	1	0	0	0	0	0	0	0	1	6023	1364	48	3		3	FOXA3	19	46375770	Silent	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10	5889947	46375770	12753213	47	9403											
SIGLEC1	6614	mdanderson.org	37	chr20	3677793	3677793	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcagtcaggatgcggcaGgcgtaaagggcagcatcagt	15	10	3	0	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	SIGLEC1_ENST00000202578,NS,carcinoma,-2,2	SIGLEC1_ENST00000202578	NM_023068	exon9	c.C2319A	p.A773A	GCGGCAGGCGTAA		49	3	0.06	62	0	0		-2	2	12	0	0				T	3677793	G	T	3677793	2	4	128	1	0	0	0	0	0	0	0	1	14359	987	35	3		3	SIGLEC1	20	3677793	Silent	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10		3677793	59347727	48	9404											
TCEA2	6919	mdanderson.org	37	chr20	62701155	62701155	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcggactgcgagcgcctGtcggctcagatcgaggaata	16	10	1	1	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_003195	exon6	c.G498T	p.L166L	GCGCCTGTCGGCT		44	3	0.07	48	0	0				114	0	0				T	62701155	G	T	62701155	2	4	128	1	0	0	0	0	0	0	0	1	15727	1364	48	3		3	TCEA2	20	62701155	Silent	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10	59023362	62701155	324365	49	9405											
COL6A1	1291	mdanderson.org	37	chr21	47421228	47421228	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcagagagcattggcctGcagaacttcgagattgccaa	11	10	1	3	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	COL6A1,colon,carcinoma,0,1	COL6A1	NM_001848	exon30	c.G1884T	p.L628L	TGGCCTGCAGAAC		42	3	0.07	25	0	0		0	1	406	0	0				T	47421228	G	T	47421228	2	4	128	1	0	0	0	0	0	0	0	1	3722	1306	46	2		2	COL6A1	21	47421228	Silent	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10		47421228	708667	50	9406											
MN1	4330	mdanderson.org	37	chr22	28194894	28194894	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttggcgctgctgctgctgCtgctgttgctgttgctgttg	14	9	0	0	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_002430	exon1	c.G1638A	p.Q546Q	CTGCTGCTGCTGT		19	3	0.16	30	0	0				5	0	0				T	28194894	C	T	28194894	2	4	128	1	0	0	0	0	0	0	0	1	9721	796	28	2		2	MN1	22	28194894	Silent	SNP	C	TCGA-XY-A8S3-01B-11D-A435-10		28194894	23109672	51	9407			1	19		2	2	17	N	TGT_C	2.790952e-05
MN1	4330	broad.mit.edu	37	chr22	28194910	28194912	+	In_Frame_Del	DEL	TGT	TGT	-													gctgctgctgttgctgttgcTgttgctgctgctgctgctgc					novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	TGT	TGT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	MN1	NM_002430	exon1	c.1620_1622del	p.540_541del	TGTTGCTGTTGCT		26	7	0.27	31	0	0		122		10	0	0				-	28194912	TGT	-	28194910	7	5	128	1	0	1	0	1	0	0	0	0	9721	1580	55	0	2348	0	MN1	22	28194910	In_Frame_Del	DEL	TGT	TCGA-XY-A8S3-01B-11D-A435-10	16	28194910	23109656	52	9408			1	19		2	2	17	N	TGT_C	2.790952e-05
PLXNB2	23654	bcgsc.ca	37	chr22	50722618	50722618	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacgtagaggtgcaggggcaGcgtctcgttggcatcgtggg	19	8	1	1	rs372542578		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	PLXNB2	NM_012401	exon13	c.C2206A	p.L736M	GGGGCAGCGTCTC		44	4	0.09	63	0	0		172		55	0	0				T	50722618	G	T	50722618	3	4	128	1	0	0	0	0	1	0	0	0	12171	962	34	2	3410	2	PLXNB2	22	50722618	Missense_Mutation	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10	22527708	50722618	581948	53	9409											
ZNF81	347344	mdanderson.org	37	chrX	47705716	47705716	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggggaacatggcagtgcctGtgaggtgaggaggaggaaga	20	4	0	3	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_007137	exon2	c.G50T	p.C17F	GTGCCTGTGAGGT		39	3	0.08	27	0	0				15	0	0				T	47705716	G	T	47705716	3	4	128	1	0	0	0	0	1	0	0	0	18221	1377	48	3	52	3	ZNF81	23	47705716	Missense_Mutation	SNP	G	TCGA-XY-A8S3-01B-11D-A435-10		47705716	107564844	54	9410											
FAM84A	151354	mdanderson.org	37	chr2	14774516	14774516	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagcccgcgccggagccgcCcgcgcccgccccgcactggg	15	22	0	0	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_145175	exon2	c.C413T	p.P138L	AGCCGCCCGCGCC		30	3	0.1	33	0	0				0	0					T	14774516	C	T	14774516	3	4	129	1	0	0	0	0	1	0	0	0	5672	623	22	3	415	3	FAM84A	2	14774516	Missense_Mutation	SNP	C	TCGA-XY-A9T9-01A-11D-A435-10		14774516	228424857	1	9411											
SDC1	6382	mdanderson.org	37	chr2	20403974	20403974	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccggtgggttctggagacGtgggaatagccgtcaggagc	19	8	2	1	rs2230922	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_002997	exon3	c.C227A	p.T76K	GGAGACGTGGGAA		12	2	0.17	15	0	0				95	0	0				T	20403974	G	T	20403974	3	4	129	1	0	0	0	0	1	0	0	0	14004	1145	40	1	717	1	SDC1	2	20403974	Missense_Mutation	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10	5629458	20403974	222795399	2	9412											
ANKRD36B	57730	broad.mit.edu	37	chr2	98195765	98195766	+	RNA	INS	-	-	C													gtcctttgatgggcaagaaaINStatgctcaggccacctatct					rs199664493		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	.	.	.	.	CAAGAAATATGCT		6	2	0.33	5	0	0				0	0					C	98195766	-	C	98195765	6	5	129	0	1	1	1	0	0	0	0	0	660	116	4	0		0	ANKRD36B	2	98195765	RNA	INS	-	TCGA-XY-A9T9-01A-11D-A435-10	77791791	98195765	145003608	3	9413											
CHST10	9486	mdanderson.org	37	chr2	101014548	101014548	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctgatgagttccaggcgCtccatgtagaccaggggctg	13	10	1	3	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_004854	exon5	c.G249T	p.E83D	CAGGCGCTCCATG		46	3	0.07	59	0	0				38	0	0				A	101014548	C	A	101014548	3	1	129	1	0	0	0	0	1	0	0	0	3420	796	28	2	833	2	CHST10	2	101014548	Missense_Mutation	SNP	C	TCGA-XY-A9T9-01A-11D-A435-10	2818783	101014548	142184825	4	9414											
SLC11A1	6556	mdanderson.org	37	chr2	219257813	219257813	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ccgggacctgagggacttgtCgggcctcaatgatctgctca	13	12	3	2	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_000578	exon12	c.C1274T	p.S425L	ACTTGTCGGGCCT		45	3	0.07	51	1	0.0196078431				0	0					T	219257813	C	T	219257813	3	4	129	1	0	0	0	0	1	0	0	0	14434	893	31	1	1320	1	SLC11A1	2	219257813	Missense_Mutation	SNP	C	TCGA-XY-A9T9-01A-11D-A435-10	118243265	219257813	23941560	5	9415											
ATRIP	84126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	48488478	48488478	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgagccaatgtccggccGcggctcgggacgtgtccagt	14	15	0	1	rs372906254	alternate_allele	TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_130384	exon1	c.G229T	p.A77S	CCGGCCGCGGCTC		38	5	0.13	35	0	0				25	13	0.52				T	48488478	G	T	48488478	3	4	129	1	0	0	0	0	1	0	0	0	1203	1087	38	1	231	1	ATRIP	3	48488478	Missense_Mutation	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10		48488478	149533952	6	9416											
KIAA2018	205717	ucsc.edu	37	chr3	113376116	113376116	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttgttgttgctgttgctgCtgctgctgctgctgctgctg	14	9	0	0	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	KIAA2018	NM_001009899	exon7	c.G4413A	p.Q1471Q	TTGCTGCTGCTGC		50	8	0.16	60	1	0.0166666667		180		3	0	0				T	113376116	C	T	113376116	2	4	129	1	0	0	0	0	0	0	0	1	8309	796	28	2		2	KIAA2018	3	113376116	Silent	SNP	C	TCGA-XY-A9T9-01A-11D-A435-10	64887638	113376116	84646314	7	9417											
DNAJC13	23317	broad.mit.edu	37	chr3	132172516	132172516	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccggcaacctataatattgCaacattgaagcctttaggag	8	9	0	1	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	DNAJC13	NM_015268	exon8	c.C818T	p.A273V	ATATTGCAACATT		37	3	0.08	41	0	0		253		49	0	0				T	132172516	C	T	132172516	3	4	129	1	0	0	0	0	1	0	0	0	4659	710	25	2	844	2	DNAJC13	3	132172516	Missense_Mutation	SNP	C	TCGA-XY-A9T9-01A-11D-A435-10	18796400	132172516	65849914	8	9418											
MCF2L2	23101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	183013184	183013184	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggacgagtctgtttggctgCcagtttcatcagactcactt	10	10	4	1	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_015078	exon13	c.G1579A	p.A527T	TGGCTGCCAGTTT		190	63	0.33	181	0	0				12	7	0.58				T	183013184	C	T	183013184	3	4	129	1	0	0	0	0	1	0	0	0	9429	739	26	2	1837	2	MCF2L2	3	183013184	Missense_Mutation	SNP	C	TCGA-XY-A9T9-01A-11D-A435-10	50840668	183013184	15009246	9	9419											
FGFRL1	53834	mdanderson.org	37	chr4	1018719	1018719	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccgccagggccacctgtgGcctcctcgtcctcggccact	10	19	0	0	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_001004356	exon7	c.G1099T	p.A367S	CCTGTGGCCTCCT		33	3	0.09	25	0	0				104	0	0				T	1018719	G	T	1018719	3	4	129	1	0	0	0	0	1	0	0	0	5901	1203	42	2	1121	2	FGFRL1	4	1018719	Missense_Mutation	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10		1018719	190135557	10	9420											
GABRG1	2565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	46053563	46053563	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatgaaacaaacagaaaCaaagagatccatcgcagtca	6	8	1	3	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_173536	exon8	c.G1009C	p.V337L	CAGAAACAAAGAG		56	6	0.11	66	0	0				0	0					G	46053563	C	G	46053563	3	3	129	1	0	0	0	0	1	0	0	0	6205	478	17	5	396	5	GABRG1	4	46053563	Missense_Mutation	SNP	C	TCGA-XY-A9T9-01A-11D-A435-10	45034844	46053563	145100713	11	9421											
MDN1	23195	mdanderson.org	37	chr6	90384205	90384205	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catggccaggtgctgcaggcGctctgtccactgctgcacgc	13	15	1	0	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	MDN1,NS,carcinoma,+1,1	MDN1	NM_014611	exon79	c.C12865A	p.R4289S	GCAGGCGCTCTGT		29	3	0.1	34	0	0		1	1	104	0	0				T	90384205	G	T	90384205	3	4	129	1	0	0	0	0	1	0	0	0	9464	1087	38	1	4021	1	MDN1	6	90384205	Missense_Mutation	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10		90384205	80730862	12	9422											
SNX13	23161	broad.mit.edu;mdanderson.org	37	chr7	17836517	17836517	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attcgaatacttttatctctGcatggaacagcctctgctaa	6	10	2	0	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	SNX13	NM_015132	exon25	c.C2559A	p.C853X	ATCTCTGCATGGA		82	4	0.05	48	0	0		113		45	0	0				T	17836517	G	T	17836517	4	4	129	1	0	0	0	0	0	1	0	0	14937	1311	46	2	322	2	SNX13	7	17836517	Nonsense_Mutation	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10		17836517	141302146	13	9423											
C7orf41	222166	hgsc.bcm.edu	37	chr7	30185862	30185862	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggattacatctcctcctgcGgcaagaagacgctccacgaa	9	13	1	2	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_152793	exon2	c.G232T	p.G78C	TCCTGCGGCAAGA		145	5	0.03	107	0	0				133	0	0				T	30185862	G	T	30185862	3	4	129	1	0	0	0	0	1	0	0	0	2407	1116	39	1	238	1	C7orf41	7	30185862	Missense_Mutation	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10	12349345	30185862	128952801	14	9424											
TECPR1	25851	mdanderson.org	37	chr7	97861128	97861128	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggcaccttcttctcctcGtggaccacatagtagatgaa	10	11	2	2	rs201920447	bycluster;by1000genomes;alternate_allele	TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_015395	exon13	c.C1962A	p.H654Q	CTCCTCGTGGACC		26	3	0.12	41	0	0				16	0	0				T	97861128	G	T	97861128	3	4	129	1	0	0	0	0	1	0	0	0	15801	1136	40	1	1591	1	TECPR1	7	97861128	Missense_Mutation	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10	67675266	97861128	61277535	15	9425											
PRKDC	5591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	48746932	48746932	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gggtcagtgctgctcccggtCagccaatcaaatgagcttct	11	12	4	1	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	.	.	.	.	CCCGGTCAGCCAA		121	10	0.08	88	0	0				288	41	0.14				G	48746932	C	G	48746932	2	3	129	1	0	0	0	0	0	0	0	1	12572	813	29	5		5	PRKDC	8	48746932	Silent	SNP	C	TCGA-XY-A9T9-01A-11D-A435-10		48746932	97617090	16	9426											
NSMAF	8439	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	59572148	59572148	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcacctctccttggagtagaGctgcagctgctgctcctgct	11	14	1	1	rs148456704	bycluster;by1000genomes	TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_003580	exon1	c.C43G	p.L15V	AGTAGAGCTGCAG		55	4	0.07	56	0	0	0.003			166	16	0.1				C	59572148	G	C	59572148	3	2	129	1	0	0	0	0	1	0	0	0	10721	971	34	5	2990	5	NSMAF	8	59572148	Missense_Mutation	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10	10825216	59572148	86791874	17	9427											
CIZ1	25792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	130941502	130941502	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtctgtggatggtatccgCggctgagtctgtgactgcac	15	9	2	2	rs145714867	byfrequency	TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_001257975	exon8	c.G1074A	p.P358P	TATCCGCGGCTGA		59	7	0.12	62	0	0	0			219	76	0.35				T	130941502	C	T	130941502	2	4	129	1	0	0	0	0	0	0	0	1	3464	755	27	1		1	CIZ1	9	130941502	Silent	SNP	C	TCGA-XY-A9T9-01A-11D-A435-10		130941502	10271929	18	9428											
MUC6	4588	bcgsc.ca	37	chr11	1016908	1016908	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggagtgtgtggtgaaggGtgtgggtagcctgctgctgc	21	5	0	1	rs79018624		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	MUC6	NM_005961	exon31	c.C5893A	p.P1965T	TGAAGGGTGTGGG		196	8	0.04	314	6	0.0191082803		408		0	0					T	1016908	G	T	1016908	3	4	129	1	0	0	0	0	1	0	0	0	10027	1261	44	3	1438	3	MUC6	11	1016908	Missense_Mutation	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10		1016908	133989608	19	9429											
KCNJ11	3767	mdanderson.org	37	chr11	17409231	17409231	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcactcctcagtcaccatGcgccccccaaagccaatagt	8	17	2	0	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_000525	exon1	c.C408A	p.R136R	CACCATGCGCCCC		39	3	0.08	72	0	0				0	0					T	17409231	G	T	17409231	2	4	129	1	0	0	0	0	0	0	0	1	8088	1306	46	2		2	KCNJ11	11	17409231	Silent	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10	16392323	17409231	117597285	20	9430											
DGKZ	8525	mdanderson.org	37	chr11	46400583	46400583	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggggcgacctcatgcaccgaGacgagcagagtcgcacgctc	14	14	1	2	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_001105540	exon29	c.G3025T	p.D1009Y	CACCGAGACGAGC		17	2	0.12	21	0	0				344	0	0				T	46400583	G	T	46400583	3	4	129	1	0	0	0	0	1	0	0	0	4502	942	33	3	3582	3	DGKZ	11	46400583	Missense_Mutation	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10	28991352	46400583	88605933	21	9431											
C1QTNF4	114900	mdanderson.org	37	chr11	47612009	47612009	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagcatggcgctctggctGgctgcgcgccgcgcgcctgg	17	15	1	0	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_031909	exon2	c.C354A	p.A118A	CTGGCTGGCTGCG		15	2	0.13	26	0	0				6	0	0				T	47612009	G	T	47612009	2	4	129	1	0	0	0	0	0	0	0	1	1978	1335	47	3		3	C1QTNF4	11	47612009	Silent	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10	1211426	47612009	87394507	22	9432											
P2RX3	5024	mdanderson.org	37	chr11	57114905	57114905	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagagtgaggagaaataccGctgtgtatcagacagccagt	12	8	1	4	rs146469943	bycluster;alternate_allele	TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_002559	exon4	c.G344T	p.R115L	AATACCGCTGTGT		36	3	0.08	39	0	0				1	0	0				T	57114905	G	T	57114905	3	4	129	1	0	0	0	0	1	0	0	0	11387	1087	38	1	358	1	P2RX3	11	57114905	Missense_Mutation	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10	9502896	57114905	77891611	23	9433											
EEF1G	1937	mdanderson.org	37	chr11	62341310	62341310	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcaaacttaccccagccGccatggtgattccgcaaaga	8	15	0	2	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_001404	exon1	c.C5T	p.A2V	CCAGCCGCCATGG		22	3	0.14	31	0	0				835	0	0				A	62341310	G	A	62341310	3	1	129	1	0	0	0	0	1	0	0	0	4954	1087	38	1	1348	1	EEF1G	11	62341310	Missense_Mutation	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10	5226405	62341310	72665206	24	9434											
VEGFB	7423	broad.mit.edu	37	chr11	64005048	64005048	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	accagcgccctgacccccggAcctgccgctgccgctgccga	11	21	0	1	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	VEGFB	NM_001243733	exon6	c.A466C	p.T156P	CCCCGGACCTGCC		33	10	0.3	31	7	0.2258064516		18		120	6	0.05				C	64005048	A	C	64005048	3	2	129	1	0	0	0	0	1	0	0	0	17210	262	10	4	589	4	VEGFB	11	64005048	Missense_Mutation	SNP	A	TCGA-XY-A9T9-01A-11D-A435-10	1663738	64005048	71001468	25	9435											
SF1	7536	mdanderson.org	37	chr11	64535590	64535590	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctcaccggtggaggtggGttgttggcgggagcagcagg	21	7	1	0	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_001178030	exon9	c.C1431A	p.N477K	AGGTGGGTTGTTG		31	3	0.1	31	0	0				619	0	0				T	64535590	G	T	64535590	3	4	129	1	0	0	0	0	1	0	0	0	14198	1252	44	3	1021	3	SF1	11	64535590	Missense_Mutation	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10	530542	64535590	70470926	26	9436											
PDGFD	80310	mdanderson.org	37	chr11	103814199	103814199	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttttgacttccggtcatgGtatgacctgcctcgataccg	9	13	1	2	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	PDGFD_ENST00000393158,NS,carcinoma,0,2	PDGFD_ENST00000393158	NM_025208	exon5	c.C753A	p.Y251X	GTCATGGTATGAC		47	3	0.06	70	0	0		0	2	2	0	0				T	103814199	G	T	103814199	4	4	129	1	0	0	0	0	0	1	0	0	11706	1256	44	3	371	3	PDGFD	11	103814199	Nonsense_Mutation	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10	39278609	103814199	31192317	27	9437											
CASP5	838	mdanderson.org	37	chr11	104874075	104874075	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtatatttgtagattctgCtgactcaggtggtccagcct	11	8	2	2	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_001136112	exon4	c.G508A	p.A170T	ATTCTGCTGACTC		43	3	0.07	51	0	0				2	0	0				T	104874075	C	T	104874075	3	4	129	1	0	0	0	0	1	0	0	0	2692	797	28	2	859	2	CASP5	11	104874075	Missense_Mutation	SNP	C	TCGA-XY-A9T9-01A-11D-A435-10	1059876	104874075	30132441	28	9438											
SNX19	399979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	130748342	130748342	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aggagacacccatcctcttaGagttgcctggggtatctgag	12	10	2	3	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_014758	exon11	c.C2954G	p.S985C	CTCTTAGAGTTGC		83	19	0.23	96	0	0				63	14	0.22				C	130748342	G	C	130748342	3	2	129	1	0	0	0	0	1	0	0	0	14943	942	33	5	28	5	SNX19	11	130748342	Missense_Mutation	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10	25874267	130748342	4258174	29	9439											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	25378561	25378561	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tacttacctgtcttgtctttGctgatgtttcaataaaagga	7	7	3	1	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	KRAS_ENST00000256078,colon,carcinoma,0,137	KRAS_ENST00000256078	NM_004985	exon4	c.C437T	p.A146V	GTCTTTGCTGATG		97	18	0.19	51	0	0		0	137	197	45	0.23				A	25378561	G	A	25378561	3	1	129	1	0	0	0	0	1	0	0	0	8480	1319	46	2	261	2	KRAS	12	25378561	Missense_Mutation	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10		25378561	108473334	30	9440											
PPP1R12A	4659	bcgsc.ca;mdanderson.org	37	chr12	80202290	80202290	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttctcttcaatgtcagatGtactggctagtcgtcttggt	9	9	4	1	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	PPP1R12A	NM_002480	exon11	c.C1523A	p.T508K	TCAGATGTACTGG		111	5	0.05	92	0	0		76		70	0	0				T	80202290	G	T	80202290	3	4	129	1	0	0	0	0	1	0	0	0	12402	1377	48	3	1629	3	PPP1R12A	12	80202290	Missense_Mutation	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10	54823729	80202290	53649605	31	9441											
CCDC64	92558	mdanderson.org	37	chr12	120427799	120427799	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccgccgccgccgccgccCtcatcttccccgggggctcc	11	23	2	0	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_207311	exon1	c.C127A	p.L43I	GCCGCCCTCATCT		13	2	0.15	19	0	0				3	0	0				A	120427799	C	A	120427799	3	1	129	1	0	0	0	0	1	0	0	0	2855	681	24	3	129	3	CCDC64	12	120427799	Missense_Mutation	SNP	C	TCGA-XY-A9T9-01A-11D-A435-10	40225509	120427799	13424096	32	9442											
DACH1	1602	mdanderson.org	37	chr13	72440446	72440446	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgctgctgctactactGctgctgctgctgctgctgct	11	14	0	0	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_080759	exon1	c.C462T	p.S154S	ACTACTGCTGCTG		17	2	0.12	37	1	0.027027027				3	0	0				A	72440446	G	A	72440446	2	1	129	1	0	0	0	0	0	0	0	1	4244	1310	46	2		2	DACH1	13	72440446	Silent	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10		72440446	42729432	33	9443											
SPTB	6710	mdanderson.org	37	chr14	65260086	65260086	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccacatcttcaccagagagCagccggtgggcgtcttgcag	12	14	3	1	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_001024858	exon13	c.G2295A	p.L765L	AGAGAGCAGCCGG		37	3	0.08	34	0	0				3	0	0				T	65260086	C	T	65260086	2	4	129	1	0	0	0	0	0	0	0	1	15173	697	25	2		2	SPTB	14	65260086	Silent	SNP	C	TCGA-XY-A9T9-01A-11D-A435-10		65260086	42089454	34	9444											
PTPN21	11099	mdanderson.org	37	chr14	88945892	88945892	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttgtgcagctgcgcgtggCgcgcggcggtgaggggctcg	21	10	0	1	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_007039	exon13	c.G1883A	p.R628H	GCGTGGCGCGCGG		18	2	0.11	16	0	0				12	0	0				T	88945892	C	T	88945892	3	4	129	1	0	0	0	0	1	0	0	0	12837	768	27	1	1669	1	PTPN21	14	88945892	Missense_Mutation	SNP	C	TCGA-XY-A9T9-01A-11D-A435-10	23685806	88945892	18403648	35	9445											
CHGA	1113	mdanderson.org	37	chr14	93397926	93397926	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcaggcaaagagagaagaGgaggaggaggaggaggagga	22	2	0	3	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	CHGA,colon,carcinoma,0,2	CHGA	NM_001275	exon6	c.G687A	p.E229E	AGAAGAGGAGGAG		62	4	0.06	62	0	0		0	2	5	1	0.2				A	93397926	G	A	93397926	2	1	129	1	0	0	0	0	0	0	0	1	3360	991	35	3		3	CHGA	14	93397926	Silent	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10	4452034	93397926	13951614	36	9446											
LTK	4058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	41804958	41804958	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcacgcctctcagctgcccGgcggcccccacggtcaccac	10	21	2	0	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	LTK_ENST00000263800,NS,carcinoma,-1,2	LTK_ENST00000263800	NM_001135685	exon3	c.C306T	p.A102A	CTGCCCGGCGGCC		29	6	0.21	45	0	0		-1	2	1	0	0				A	41804958	G	A	41804958	2	1	129	1	0	0	0	0	0	0	0	1	9124	1103	39	1		1	LTK	15	41804958	Silent	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10		41804958	60726434	37	9447											
ZNF646	9726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	31088507	31088507	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaagaaccactctcgactgCatgcccagtatcggccttac	8	14	1	2	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_014699	exon2	c.C862T	p.H288Y	CGACTGCATGCCC		93	17	0.18	110	0	0				39	15	0.38				T	31088507	C	T	31088507	3	4	129	1	0	0	0	0	1	0	0	0	18118	710	25	2	864	2	ZNF646	16	31088507	Missense_Mutation	SNP	C	TCGA-XY-A9T9-01A-11D-A435-10		31088507	59266246	38	9448											
FBXL8	55336	mdanderson.org	37	chr16	67197098	67197098	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtcccgagctccacagccTttttctggacaacagtaccc	7	16	1	0	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_018378	exon3	c.T500C	p.L167P	ACAGCCTTTTTCT		16	2	0.13	24	1	0.0416666667				5	0	0				C	67197098	T	C	67197098	3	2	129	1	0	0	0	0	1	0	0	0	5757	1609	56	4	506	4	FBXL8	16	67197098	Missense_Mutation	SNP	T	TCGA-XY-A9T9-01A-11D-A435-10	36108591	67197098	23157655	39	9449											
SMG6	23293	mdanderson.org	37	chr17	1964855	1964855	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	acattccttgtgagcgccttCacacgcaggttccggtcatc	9	14	2	1	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_017575	exon19	c.G4191T	p.V1397V	CGCCTTCACACGC		29	3	0.1	37	0	0				67	0	0				A	1964855	C	A	1964855	2	1	129	1	0	0	0	0	0	0	0	1	14850	813	29	3		3	SMG6	17	1964855	Silent	SNP	C	TCGA-XY-A9T9-01A-11D-A435-10		1964855	79230355	40	9450											
BAHCC1	57597	mdanderson.org	37	chr17	79412681	79412681	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggagggtcagcagtccaCggccgacatcatcacatccg	13	13	3	0	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	.	.	.	.	AGTCCACGGCCGA		51	3	0.06	65	0	0				2	0	0				T	79412681	C	T	79412681	3	4	129	1	0	0	0	0	1	0	0	0	1294	536	19	1	3006	1	BAHCC1	17	79412681	Missense_Mutation	SNP	C	TCGA-XY-A9T9-01A-11D-A435-10	77447826	79412681	1782529	41	9451											
LAMA3	3909	mdanderson.org	37	chr18	21427621	21427621	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggagtgtgaccgggacagCgggcagtgcaggtgagctgg	20	9	0	2	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_198129	exon32	c.C4125T	p.S1375S	GGACAGCGGGCAG		35	3	0.09	41	0	0				1	0	0				T	21427621	C	T	21427621	2	4	129	1	0	0	0	0	0	0	0	1	8645	767	27	1		1	LAMA3	18	21427621	Silent	SNP	C	TCGA-XY-A9T9-01A-11D-A435-10		21427621	56649627	42	9452											
FBXO15	201456	mdanderson.org	37	chr18	71793289	71793289	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agccaatcatggtagatatgGtcaaatgactcagattgtac	9	7	3	3	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_001142958	exon6	c.C833A	p.T278N	GATATGGTCAAAT		45	3	0.07	40	0	0				3	0	0				T	71793289	G	T	71793289	3	4	129	1	0	0	0	0	1	0	0	0	5760	1261	44	3	719	3	FBXO15	18	71793289	Missense_Mutation	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10	50365668	71793289	6283959	43	9453											
ZNF407	55628	broad.mit.edu	37	chr18	72775488	72775488	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccgagcagctggctgatggAgccacccaggtggtcgtcgt	15	13	0	1	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	ZNF407	NM_017757	exon8	c.A5811G	p.G1937G	TGATGGAGCCACC		13	3	0.23	38	1	0.0263157895		231		17	0	0				G	72775488	A	G	72775488	2	3	129	1	0	0	0	0	0	0	0	1	17943	291	11	4		4	ZNF407	18	72775488	Silent	SNP	A	TCGA-XY-A9T9-01A-11D-A435-10	982199	72775488	5301760	44	9454											
TCF3	6929	mdanderson.org	37	chr19	1615323	1615323	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcaggatgaccgagacagCctggtgcaggatgagcagtt	15	8	1	3	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_003200	exon18	c.G1783A	p.A595T	AGACAGCCTGGTG		28	3	0.11	58	0	0				853	0	0				T	1615323	C	T	1615323	3	4	129	1	0	0	0	0	1	0	0	0	15753	739	26	2	420	2	TCF3	19	1615323	Missense_Mutation	SNP	C	TCGA-XY-A9T9-01A-11D-A435-10		1615323	57513660	45	9455											
ZBTB7A	51341	mdanderson.org	37	chr19	4055177	4055177	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagcccactcaggatgtcGctgctgtggtcggggaacgg	15	11	2	0	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_015898	exon2	c.C54A	p.S18R	GATGTCGCTGCTG		39	3	0.08	50	0	0				23	0	0				T	4055177	G	T	4055177	3	4	129	1	0	0	0	0	1	0	0	0	17611	1078	38	1	1708	1	ZBTB7A	19	4055177	Missense_Mutation	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10	2439854	4055177	55073806	46	9456											
TICAM1	148022	mdanderson.org	37	chr19	4816391	4816391	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctctgagggggtgcgggtgAggccgtagggaaggctgggg	24	6	1	2	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_182919	exon2	c.T1999C	p.S667P	CGGGTGAGGCCGT		39	3	0.08	43	0	0				25	0	0				G	4816391	A	G	4816391	3	3	129	1	0	0	0	0	1	0	0	0	15951	304	11	4	143	4	TICAM1	19	4816391	Missense_Mutation	SNP	A	TCGA-XY-A9T9-01A-11D-A435-10	761214	4816391	54312592	47	9457											
ZNF440	126070	broad.mit.edu	37	chr19	11943326	11943329	+	Frame_Shift_Del	DEL	ACAA	ACAA	-													cttcaaagtcatgaaaggacAcaaacacacataagaataca					novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	ACAA	ACAA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	ZNF440	NM_152357	exon4	c.1335_1338del	p.445_446del	AAGGACACAAACA		68	9	0.13	57	0	0		56		20	0	0				-	11943329	ACAA	-	11943326	7	5	129	1	0	1	0	1	0	0	0	0	17969	146	6	0	1349	0	ZNF440	19	11943326	Frame_Shift_Del	DEL	ACAA	TCGA-XY-A9T9-01A-11D-A435-10	7126935	11943326	47185657	48	9458											
FAM32A	26017	broad.mit.edu	37	chr19	16296279	16296279	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcctacgagcaggtccaaaAgggacccctgaagctgaaag	13	11	0	2	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	FAM32A	NM_014077	exon1	c.A26G	p.K9R	TCCAAAAGGGACC		133	4	0.03	151	1	0.0066225166		6		408	0	0				G	16296279	A	G	16296279	3	3	129	1	0	0	0	0	1	0	0	0	5587	72	3	4	28	4	FAM32A	19	16296279	Missense_Mutation	SNP	A	TCGA-XY-A9T9-01A-11D-A435-10	4352953	16296279	42832704	49	9459											
TGFB1	7040	mdanderson.org	37	chr19	41858943	41858943	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcagccgcagcccggaggGcggcatgggggaggcggcgc	21	13	0	0	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_000660	exon1	c.C7A	p.P3T	CGGAGGGCGGCAT		8	2	0.25	14	0	0				67	0	0				T	41858943	G	T	41858943	3	4	129	1	0	0	0	0	1	0	0	0	15875	1203	42	2	1193	2	TGFB1	19	41858943	Missense_Mutation	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10	25562664	41858943	17270040	50	9460											
PTPRA	5786	mdanderson.org	37	chr20	3017924	3017924	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctacagaggccacacatgGtccagacactggtatgctgc	12	12	0	2	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_002836	exon27	c.G2323T	p.V775F	CACATGGTCCAGA		38	3	0.08	51	0	0				117	0	0				T	3017924	G	T	3017924	3	4	129	1	0	0	0	0	1	0	0	0	12846	1261	44	3	2401	3	PTPRA	20	3017924	Missense_Mutation	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10		3017924	60007596	51	9461											
RRBP1	6238	ucsc.edu	37	chr20	17639714	17639714	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgggccccctcagccttcTtgccctggttctgggcccct	10	18	4	0	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	RRBP1	.	.	.	.	GCCTTCTTGCCCT		109	1	0.01	181	0	0		157		315	52	0.17				C	17639714	T	C	17639714	3	2	129	1	0	0	0	0	1	0	0	0	13729	1624	56	4		4	RRBP1	20	17639714	Missense_Mutation	SNP	T	TCGA-XY-A9T9-01A-11D-A435-10	14621790	17639714	45385806	52	9462											
MYH7B	57644	hgsc.bcm.edu;mdanderson.org	37	chr20	33583281	33583281	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacctggccgcccgccggcGcaagctggaggacgagtgca	16	14	0	1	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_020884	exon28	c.G2969A	p.R990H	GCCGGCGCAAGCT		72	4	0.06	83	0	0				2	0	0				A	33583281	G	A	33583281	3	1	129	1	0	0	0	0	1	0	0	0	10087	1087	38	1	3071	1	MYH7B	20	33583281	Missense_Mutation	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10	15943567	33583281	29442239	53	9463											
RASL10A	10633	mdanderson.org	37	chr22	29709863	29709863	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcccctacctggtctccgcGatgcgctgccgcagggcctt	13	17	1	0	rs148807115	alternate_allele	TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_006477	exon2	c.C333A	p.I111I	CTCCGCGATGCGC		31	3	0.1	31	0	0				26	0	0				T	29709863	G	T	29709863	2	4	129	1	0	0	0	0	0	0	0	1	13130	1048	37	1		1	RASL10A	22	29709863	Silent	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10		29709863	21594703	54	9464											
DOCK11	139818	broad.mit.edu	37	chrX	117742320	117742320	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caataaacaaattgctaaagGtatgaacacaggacacaaca	6	8	0	1	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	DOCK11	NM_144658	exon26	c.2877+1G>T	.	CTAAAGGTATGAA		183	5	0.03	141	0	0		185		0	0					T	117742320	G	T	117742320	5	4	129	1	0	0	0	0	0	0	1	0	4713	1275	44	3	2980	3	DOCK11	23	117742320	Splice_Site	SNP	G	TCGA-XY-A9T9-01A-11D-A435-10		117742320	37528240	55	9465											
SSBP3	23648	broad.mit.edu	37	chr1	54871665	54871665	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgagggcaccgccgagcctTtgcctttggcaaacatggtt	12	13	0	0	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	SSBP3	NM_001009955	exon1	c.A17G	p.K6R	GAGCCTTTGCCTT		55	5	0.09	96	1	0.0104166667		65		83	0	0				C	54871665	T	C	54871665	3	2	130	1	0	0	0	0	1	0	0	0	15236	1841	64	4	1221	4	SSBP3	1	54871665	Missense_Mutation	SNP	T	TCGA-YU-A90P-01A-11D-A435-10		54871665	194378956	1	9466											
TDRKH	11022	broad.mit.edu	37	chr1	151747281	151747281	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaggcatctgtttctgtgGcctgagtggatgaaaacagg	15	6	2	3	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	TDRKH	NM_001083965	exon12	c.C1538A	p.A513D	TCTGTGGCCTGAG		95	4	0.04	80	0	0		45		52	0	0				T	151747281	G	T	151747281	5	4	130	1	0	0	0	0	0	0	1	0	15795	1217	42	2	155	2	TDRKH	1	151747281	Splice_Site	SNP	G	TCGA-YU-A90P-01A-11D-A435-10	96875616	151747281	97503340	2	9467											
PROX1	5629	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr1	214170542	214170542	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagcagcaacagagtttcCagcagctggtttcagcccga	11	12	1	1	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_001270616	exon2	c.C664T	p.Q222X	AGTTTCCAGCAGC		80	6	0.08	61	0	0				2	0	0				T	214170542	C	T	214170542	4	4	130	1	0	0	0	0	0	1	0	0	12611	595	21	3	666	3	PROX1	1	214170542	Nonsense_Mutation	SNP	C	TCGA-YU-A90P-01A-11D-A435-10	62423261	214170542	35080079	3	9468											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	215847769	215847769	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggggtgagagtaaaatcaCgatagcgtgtttccaagcct	12	8	1	1	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_206933	exon63	c.G13484A	p.R4495H	AAATCACGATAGC		112	22	0.2	112	0	0				0	0					T	215847769	C	T	215847769	3	4	130	1	0	0	0	0	1	0	0	0	17095	536	19	1	2164	1	USH2A	1	215847769	Missense_Mutation	SNP	C	TCGA-YU-A90P-01A-11D-A435-10	1677227	215847769	33402852	4	9469											
SEC22C	9117	mdanderson.org	37	chr3	42594863	42594863	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagcccgtgcaggtacatGttgcccaggcaaataaagag	11	11	1	1	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_032970	exon7	c.C789A	p.N263K	GTACATGTTGCCC		55	3	0.05	59	0	0				34	0	0				T	42594863	G	T	42594863	3	4	130	1	0	0	0	0	1	0	0	0	14043	1368	48	3	172	3	SEC22C	3	42594863	Missense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10		42594863	155427567	5	9470											
ATRIP	84126	mdanderson.org	37	chr3	48505443	48505443	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgctgtccttttcagaagGctgcctcctgctgctgctgt	11	13	1	1	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_130384	exon10	c.G1886T	p.G629V	CAGAAGGCTGCCT		36	3	0.08	39	0	0				40	0	0				T	48505443	G	T	48505443	3	4	130	1	0	0	0	0	1	0	0	0	1203	1203	42	2	1924	2	ATRIP	3	48505443	Missense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10	5910580	48505443	149516987	6	9471											
CDHR4	389118	mdanderson.org	37	chr3	49829387	49829387	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtgcttgcagcagctggGccaacctaaaatgccaggag	14	10	0	0	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_001007540	exon16	c.C2144A	p.A715D	AGCTGGGCCAACC		50	3	0.06	50	0	0				0	0					T	49829387	G	T	49829387	3	4	130	1	0	0	0	0	1	0	0	0	3143	1203	42	2	238	2	CDHR4	3	49829387	Missense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10	1323944	49829387	148193043	7	9472											
C3orf72	401089	mdanderson.org	37	chr3	138666289	138666289	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgaggaaaggcgctccaagCctcctcgcggctttcaggtg	14	13	1	0	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_001040061	exon1	c.C83T	p.A28V	TCCAAGCCTCCTC		43	4	0.09	55	0	0				0	0					T	138666289	C	T	138666289	3	4	130	1	0	0	0	0	1	0	0	0	2258	739	26	2	85	2	C3orf72	3	138666289	Missense_Mutation	SNP	C	TCGA-YU-A90P-01A-11D-A435-10	88836902	138666289	59356141	8	9473											
RBP1	5947	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	139257745	139257745	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	catatggtcaccgtcctgcaCgatctctttgtctggcttca	8	13	4	0	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_002899	exon2	c.G316C	p.V106L	CCTGCACGATCTC		120	8	0.07	134	0	0				172	15	0.09				G	139257745	C	G	139257745	3	3	130	1	0	0	0	0	1	0	0	0	13206	536	19	5	357	5	RBP1	3	139257745	Missense_Mutation	SNP	C	TCGA-YU-A90P-01A-11D-A435-10	591456	139257745	58764685	9	9474											
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	30725116	30725116	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttttctattgaaaatgacaCggggaccatttactccacaa	6	9	1	2	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_032457	exon1	c.C2072T	p.T691M	ATGACACGGGGAC		57	15	0.26	80	0	0				1	0	0				T	30725116	C	T	30725116	3	4	130	1	0	0	0	0	1	0	0	0	11562	536	19	1	2074	1	PCDH7	4	30725116	Missense_Mutation	SNP	C	TCGA-YU-A90P-01A-11D-A435-10		30725116	160429160	10	9475											
BMP2K	55589	broad.mit.edu	37	chr4	79792085	79792085	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcatcgtcatcctcaccaGcagcagcagcagcagcagca	9	16	2	0	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	BMP2K_ENST00000502871,NS,carcinoma,0,7	BMP2K	NM_017593	exon11	c.G1380C	p.Q460H	TCACCAGCAGCAG		76	3	0.04	54	0	0		169	7	48	0	0				C	79792085	G	C	79792085	3	2	130	1	0	0	0	0	1	0	0	0	1459	962	34	5	1422	5	BMP2K	4	79792085	Missense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10	49066969	79792085	111362191	11	9476											
NKD2	85409	broad.mit.edu	37	chr5	1038447	1038449	+	In_Frame_Del	DEL	CAC	CAC	-													agcaccaccaccaccacgagCaccaccaccaccaccaccac					rs75431263	alternate_allele	TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	CAC	CAC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	NKD2	NM_033120	exon10	c.1315_1317del	p.439_439del	CACGAGCACCACC		6	2	0.33	8	0	0		39		8	0	0				-	1038449	CAC	-	1038447	7	5	130	1	0	1	0	1	0	0	0	0	10488	710	25	0	1353	0	NKD2	5	1038447	In_Frame_Del	DEL	CAC	TCGA-YU-A90P-01A-11D-A435-10		1038447	179876813	12	9477											
FST	10468	mdanderson.org	37	chr5	52781043	52781043	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gctactggaagtaaagcactCcggatcttgcaactgtaagt	10	9	1	0	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_006350	exon5	c.C938A	p.S313Y	AGCACTCCGGATC		31	3	0.1	45	0	0				1	0	0				A	52781043	C	A	52781043	3	1	130	1	0	0	0	0	1	0	0	0	6110	855	30	3	956	3	FST	5	52781043	Missense_Mutation	SNP	C	TCGA-YU-A90P-01A-11D-A435-10	51742596	52781043	128134217	13	9478											
TRIM23	373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr5	64906830	64906830	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	agtgagccatatctaaaattGatgctcggatctgattagct	9	7	2	3	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	TRIM23,bladder,carcinoma,0,1	TRIM23	NM_033228	exon5	c.C686G	p.S229X	AAAATTGATGCTC		73	15	0.21	93	0	0		0	1	19	5	0.26				C	64906830	G	C	64906830	4	2	130	1	0	0	0	0	0	1	0	0	16557	1294	45	5	1133	5	TRIM23	5	64906830	Nonsense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10	12125787	64906830	116008430	14	9479											
SLC26A2	1836	mdanderson.org	37	chr5	149361140	149361140	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caattcaatttttagatacaGcagggatccacacactgaaa	6	9	1	2	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_000112	exon3	c.G1984T	p.A662S	GATACAGCAGGGA		40	3	0.08	54	0	0				5	0	0				T	149361140	G	T	149361140	3	4	130	1	0	0	0	0	1	0	0	0	14571	971	34	2	1990	2	SLC26A2	5	149361140	Missense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10	84454310	149361140	31554120	15	9480											
LCP2	3937	mdanderson.org	37	chr5	169683547	169683547	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccttgagagaagtatggtGgcagggaggcactctgtgga	16	6	1	2	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_005565	exon17	c.C1133A	p.P378Q	TATGGTGGCAGGG		51	3	0.06	67	0	0				102	1	0.01				T	169683547	G	T	169683547	3	4	130	1	0	0	0	0	1	0	0	0	8730	1348	47	3	488	3	LCP2	5	169683547	Missense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10	20322407	169683547	11231713	16	9481											
MSH5	4439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	31725947	31725947	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgtttctctcacagactgtGtacagtgccctgggcctgag	12	11	2	2	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_025259	exon13	c.G1071C	p.V357V	GACTGTGTACAGT		70	24	0.34	74	0	0				18	6	0.33				C	31725947	G	C	31725947	2	2	130	1	0	0	0	0	0	0	0	1	9921	1364	48	5		5	MSH5	6	31725947	Silent	SNP	G	TCGA-YU-A90P-01A-11D-A435-10		31725947	139389120	17	9482											
TBP	6908	hgsc.bcm.edu	37	chr6	170871004	170871004	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcaacaaaggcagcagcaGcaacaacaacagcagcagca	10	12	0	0	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA		49	7	0.14	74	0	0				61	0	0				A	170871004	G	A	170871004	2	1	130	1	0	0	0	0	0	0	0	1	15703	962	34	2		2	TBP	6	170871004	Silent	SNP	G	TCGA-YU-A90P-01A-11D-A435-10	139145057	170871004	244063	18	9483											
TRA2A	29896	broad.mit.edu	37	chr7	23545402	23545403	+	Frame_Shift_Del	DEL	TC	TC	-													gatcttgatcgtgatctataTcgactataataaggagaagg					novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	TC	TC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	TRA2A	NM_013293	exon7	c.800_801del	p.267_267del	TCTATATCGACTA		155	9	0.06	166	0	0		29		447	37	0.08				-	23545403	TC	-	23545402	7	5	130	1	0	1	0	1	0	0	0	0	16493	1422	50	0	55	0	TRA2A	7	23545402	Frame_Shift_Del	DEL	TC	TCGA-YU-A90P-01A-11D-A435-10		23545402	135593261	19	9484											
NOM1	64434	mdanderson.org	37	chr7	156756636	156756636	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaactcgcccggaagcagaGgatgaacacagacatccgga	12	11	0	4	rs369881632	alternate_allele	TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_138400	exon7	c.G1949T	p.R650M	AGCAGAGGATGAA		56	3	0.05	59	0	0				68	0	0				T	156756636	G	T	156756636	3	4	130	1	0	0	0	0	1	0	0	0	10576	1000	35	3	1975	3	NOM1	7	156756636	Missense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10	133211234	156756636	2382027	20	9485											
GLI4	2738	mdanderson.org	37	chr8	144351632	144351632	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgtcagtctctcatcaccAgggacacctggaacccagca	8	16	4	0	rs6558341	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_138465	exon2	c.A66T	p.P22P	ATCACCAGGGACA		81	2	0.02	76	0	0				49	0	0				T	144351632	A	T	144351632	2	4	130	1	0	0	0	0	0	0	0	1	6481	175	7	5		5	GLI4	8	144351632	Silent	SNP	A	TCGA-YU-A90P-01A-11D-A435-10		144351632	2012390	21	9486											
VCP	7415	mdanderson.org	37	chr9	35059088	35059088	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgggtttgtctgcctctcTcgttctcgcctaatctcact	8	13	4	0	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_007126	exon15	c.A2133G	p.R711R	CCTCTCTCGTTCT		53	3	0.06	60	0	0				1518	1	0				C	35059088	T	C	35059088	2	2	130	1	0	0	0	0	0	0	0	1	17199	1538	54	4		4	VCP	9	35059088	Silent	SNP	T	TCGA-YU-A90P-01A-11D-A435-10		35059088	106154343	22	9487											
PHF2	5253	mdanderson.org	37	chr9	96407931	96407931	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctgaagacgtggtggcccGtgtgccaggaagtcagctca	15	10	2	2	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_005392	exon4	c.G320A	p.R107H	TGGCCCGTGTGCC		33	3	0.09	38	0	0				20	0	0				A	96407931	G	A	96407931	3	1	130	1	0	0	0	0	1	0	0	0	11877	1145	40	1	334	1	PHF2	9	96407931	Missense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10	61348843	96407931	44805500	23	9488											
SIRT1	23411	mdanderson.org	37	chr10	69676305	69676305	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	attaatgaagctatatctgtGaaacaggaagtaacagacat	8	5	1	3	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_012238	exon9	c.G2199T	p.V733V	ATCTGTGAAACAG		33	3	0.09	44	0	0				149	0	0				T	69676305	G	T	69676305	2	4	130	1	0	0	0	0	0	0	0	1	14391	1277	45	3		3	SIRT1	10	69676305	Silent	SNP	G	TCGA-YU-A90P-01A-11D-A435-10		69676305	65858442	24	9489											
DNMBP	23268	mdanderson.org	37	chr10	101643788	101643788	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccattgtcaatcagccagCggttctggctgcccatgggg	12	13	3	0	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_015221	exon15	c.G3977A	p.R1326H	AGCCAGCGGTTCT		48	3	0.06	73	0	0				22	0	0				T	101643788	C	T	101643788	3	4	130	1	0	0	0	0	1	0	0	0	4701	768	27	1	768	1	DNMBP	10	101643788	Missense_Mutation	SNP	C	TCGA-YU-A90P-01A-11D-A435-10	31967483	101643788	33890959	25	9490											
PDZD8	118987	hgsc.bcm.edu;mdanderson.org	37	chr10	119044191	119044191	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tcctagcttattacgataaaGaatttctgatgattcccatg	6	8	1	3	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_173791	exon5	c.C2053A	p.L685I	GATAAAGAATTTC		111	5	0.05	125	0	0				37	0	0				T	119044191	G	T	119044191	3	4	130	1	0	0	0	0	1	0	0	0	11751	942	33	3	1415	3	PDZD8	10	119044191	Missense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10	17400403	119044191	16490556	26	9491											
DCHS1	8642	mdanderson.org	37	chr11	6653321	6653321	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagctgttgcaggctgtagGtcagacgtccattgggtcct	13	10	1	1	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_003737	exon6	c.C3422A	p.T1141N	CTGTAGGTCAGAC		21	2	0.1	17	0	0				15	0	0				T	6653321	G	T	6653321	3	4	130	1	0	0	0	0	1	0	0	0	4310	1261	44	3	6538	3	DCHS1	11	6653321	Missense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10		6653321	128353195	27	9492											
OR1S2	219958	broad.mit.edu	37	chr11	57970760	57970760	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aagctgtagatgaaggggttCatcatgggtgtcaccacagt	13	7	3	2	rs200054918		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	OR1S2,NS,carcinoma,0,3	OR1S2	NM_001004459	exon1	c.G894A	p.M298I	GGGGTTCATCATG		79	5	0.06	83	1	0.0120481928		119	3	0	0					T	57970760	C	T	57970760	3	4	130	1	0	0	0	0	1	0	0	0	11020	826	29	3	86	3	OR1S2	11	57970760	Missense_Mutation	SNP	C	TCGA-YU-A90P-01A-11D-A435-10	51317439	57970760	77035756	28	9493											
INTS5	80789	mdanderson.org	37	chr11	62416258	62416258	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tagccggtcacaagcctcacGcacggtgtctggcacagcca	11	15	3	0	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_030628	exon2	c.C1294T	p.R432C	CCTCACGCACGGT		88	4	0.05	121	0	0				48	1	0.02				A	62416258	G	A	62416258	3	1	130	1	0	0	0	0	1	0	0	0	7824	1087	38	1	1769	1	INTS5	11	62416258	Missense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10	4445498	62416258	72590258	29	9494											
MYO7A	4647	mdanderson.org	37	chr11	76913417	76913417	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agctgcgaacggcggagcccGaggtgcgtgccaagccctac	15	14	0	0	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_000260	exon37	c.G5116T	p.E1706X	GAGCCCGAGGTGC		46	3	0.07	45	0	0				8	0	0				T	76913417	G	T	76913417	4	4	130	1	0	0	0	0	0	1	0	0	10129	1059	37	1	5292	1	MYO7A	11	76913417	Nonsense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10	14497159	76913417	58093099	30	9495											
WBP11	51729	broad.mit.edu	37	chr12	14940229	14940229	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgggattagtgatctgtgGcttggcactgatggttgctg	15	6	1	2	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	WBP11	NM_016312	exon12	c.C1696A	p.P566T	TCTGTGGCTTGGC		223	5	0.02	63	0	0		66		1950	1	0				T	14940229	G	T	14940229	3	4	130	1	0	0	0	0	1	0	0	0	17317	1203	42	2	233	2	WBP11	12	14940229	Missense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10		14940229	118911666	31	9496											
CAPRIN2	65981	broad.mit.edu	37	chr12	30863206	30863206	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccaggggccagattagagGttctggctgctgagaaggca	15	8	1	3	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	CAPRIN2	NM_001002259	exon18	c.C3014A	p.T1005N	TTAGAGGTTCTGG		331	6	0.02	125	0	0		109		278	0	0				T	30863206	G	T	30863206	3	4	130	1	0	0	0	0	1	0	0	0	2654	1261	44	3	373	3	CAPRIN2	12	30863206	Missense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10	15922977	30863206	102988689	32	9497											
RPGRIP1	57096	mdanderson.org	37	chr14	21769151	21769151	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccaccttgctgcggttgaCcgctgctggccgggacctgc	14	15	0	1	rs371371555		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_020366	exon3	c.C245T	p.T82I	GGTTGACCGCTGC		49	3	0.06	62	0	0				0	0					T	21769151	C	T	21769151	3	4	130	1	0	0	0	0	1	0	0	0	13600	507	18	3	255	3	RPGRIP1	14	21769151	Missense_Mutation	SNP	C	TCGA-YU-A90P-01A-11D-A435-10		21769151	85580389	33	9498											
SLC7A7	9056	mdanderson.org	37	chr14	23244708	23244708	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caacatggatcatgcagatgGcatcagggagatggccttct	12	9	3	2	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_001126105	exon8	c.C1040A	p.A347D	CAGATGGCATCAG		35	3	0.09	42	0	0				73	0	0				T	23244708	G	T	23244708	3	4	130	1	0	0	0	0	1	0	0	0	14757	1203	42	2	511	2	SLC7A7	14	23244708	Missense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10	1475557	23244708	84104832	34	9499											
VPS13C	54832	mdanderson.org	37	chr15	62204118	62204118	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cgccaacttctagttctaatGatgacttgtttgcaatggta	8	8	2	2	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_020821	exon63	c.C8636A	p.S2879X	TCTAATGATGACT		75	4	0.05	85	0	0				6	0	0				T	62204118	G	T	62204118	4	4	130	1	0	0	0	0	0	1	0	0	17250	1294	45	3	2745	3	VPS13C	15	62204118	Nonsense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10		62204118	40327274	35	9500											
NUBP2	10101	mdanderson.org	37	chr16	1838172	1838172	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tcttctccaggggcggcggaGaggagctggcccagctcgcc	16	14	2	1	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_012225	exon6	c.G634T	p.E212X	GGCGGAGAGGAGC		32	3	0.09	35	0	0				214	0	0				T	1838172	G	T	1838172	4	4	130	1	0	0	0	0	0	1	0	0	10763	943	33	3	656	3	NUBP2	16	1838172	Nonsense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10		1838172	88516581	36	9501											
TK2	7084	broad.mit.edu	37	chr16	66565284	66565284	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgagcatctgaaacctaccTgaggacgagtatgcctgtcc	10	12	1	3	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	TK2	NM_004614	exon5	c.A374T	p.Q125L	CCTACCTGAGGAC		65	3	0.05	70	0	0		17		20	0	0				A	66565284	T	A	66565284	5	1	130	1	0	0	0	0	0	0	1	0	15992	1594	55	5	447	5	TK2	16	66565284	Splice_Site	SNP	T	TCGA-YU-A90P-01A-11D-A435-10	64727112	66565284	23789469	37	9502											
FUK	197258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	70502854	70502854	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctacctaggcttggactccGgagcccggcctgtccaggtg	13	15	0	0	rs200140905		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_145059	exon9	c.G766A	p.G256R	GACTCCGGAGCCC		77	18	0.23	67	0	0	0.001			34	14	0.41				A	70502854	G	A	70502854	3	1	130	1	0	0	0	0	1	0	0	0	6130	1117	39	1	796	1	FUK	16	70502854	Missense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10	3937570	70502854	19851899	38	9503											
IL34	146433	broad.mit.edu	37	chr16	70693984	70693984	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agagccctcattgcagtatgCggccacccagctgtaccctc	9	16	1	1	rs201277640	bycluster;by1000genomes	TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	IL34,bladder,carcinoma,0,3	IL34	NM_152456	exon7	c.C623T	p.A208V	AGTATGCGGCCAC		234	6	0.03	256	0	0		26	3	104	0	0				T	70693984	C	T	70693984	3	4	130	1	0	0	0	0	1	0	0	0	7737	768	27	1	645	1	IL34	16	70693984	Missense_Mutation	SNP	C	TCGA-YU-A90P-01A-11D-A435-10	191130	70693984	19660769	39	9504											
HSDL1	83693	mdanderson.org	37	chr16	84163181	84163181	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgggaccaatatcctgtgGtccttttggaaatcccaaga	9	9	0	1	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_031463	exon5	c.C866A	p.T289N	CCTGTGGTCCTTT		44	3	0.07	55	0	0				47	0	0				T	84163181	G	T	84163181	3	4	130	1	0	0	0	0	1	0	0	0	7433	1261	44	3	134	3	HSDL1	16	84163181	Missense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10	13469197	84163181	6191572	40	9505											
C1QBP	708	mdanderson.org	37	chr17	5341589	5341589	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaatcaacaaaagctttGtctcctagaaaagaaatcca	6	8	2	2	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_001212	exon2	c.C237A	p.D79E	AGCTTTGTCTCCT		52	3	0.06	63	0	0				515	0	0				T	5341589	G	T	5341589	3	4	130	1	0	0	0	0	1	0	0	0	1969	1368	48	3	631	3	C1QBP	17	5341589	Missense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10		5341589	75853621	41	9506											
KIF18B	146909	broad.mit.edu	37	chr17	43009468	43009468	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctctggggactgctcctGgtctgaagagttcccttcca	10	13	2	2	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	KIF18B	NM_001264573	exon10	c.C1381A	p.Q461K	GCTCCTGGTCTGA		102	4	0.04	100	0	0		63		67	0	0				T	43009468	G	T	43009468	3	4	130	1	0	0	0	0	1	0	0	0	8322	1357	47	3	1213	3	KIF18B	17	43009468	Missense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10	37667879	43009468	38185742	42	9507											
CASKIN2	57513	mdanderson.org	37	chr17	73498038	73498038	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggaaggctgctgggctcGggctggggaaggctagaagc	20	8	0	1	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_020753	exon18	c.C3117A	p.P1039P	GGGCTCGGGCTGG		55	3	0.05	49	0	0				60	0	0				T	73498038	G	T	73498038	2	4	130	1	0	0	0	0	0	0	0	1	2685	1103	39	1		1	CASKIN2	17	73498038	Silent	SNP	G	TCGA-YU-A90P-01A-11D-A435-10	30488570	73498038	7697172	43	9508											
TBCD	6904	mdanderson.org	37	chr17	80739475	80739475	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttttggcagatttatcacaCgtcctgatgtcaagcaaagc	8	10	2	2	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_005993	exon7	c.C649T	p.R217C	ATCACACGTCCTG		41	3	0.07	37	0	0				422	0	0				T	80739475	C	T	80739475	3	4	130	1	0	0	0	0	1	0	0	0	15692	536	19	1	675	1	TBCD	17	80739475	Missense_Mutation	SNP	C	TCGA-YU-A90P-01A-11D-A435-10	7241437	80739475	455735	44	9509											
HNRNPM	4670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	8539106	8539106	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	atgggtcgatttggatctggGatgaacatgggcaggataaa	15	4	1	1	rs375739833	alternate_allele	TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	HNRNPM,NS,malignant_melanoma,+2,1	HNRNPM	NM_005968	exon12	c.G1098C	p.G366G	ATCTGGGATGAAC		141	19	0.13	132	0	0		2	1	1490	338	0.23				C	8539106	G	C	8539106	2	2	130	1	0	0	0	0	0	0	0	1	7311	1161	41	5		5	HNRNPM	19	8539106	Silent	SNP	G	TCGA-YU-A90P-01A-11D-A435-10		8539106	50589877	45	9510											
ZNF224	7767	mdanderson.org	37	chr19	44611473	44611473	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcagatgggcctcgtgtcTtttgaaacatcagcgagtcc	10	11	3	2	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_013398	exon6	c.T1160A	p.L387H	CGTGTCTTTTGAA		58	4	0.07	47	0	0				37	0	0				A	44611473	T	A	44611473	3	1	130	1	0	0	0	0	1	0	0	0	17835	1609	56	5	1174	5	ZNF224	19	44611473	Missense_Mutation	SNP	T	TCGA-YU-A90P-01A-11D-A435-10	36072367	44611473	14517510	46	9511											
MYPOP	339344	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	46394069	46394069	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagcagccaccacggacaCgggctctggggtgatctcca	12	15	2	1	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_001012643	exon3	c.G1012A	p.V338M	CGGACACGGGCTC		30	5	0.17	26	0	0				1	1	1				T	46394069	C	T	46394069	3	4	130	1	0	0	0	0	1	0	0	0	10146	536	19	1	191	1	MYPOP	19	46394069	Missense_Mutation	SNP	C	TCGA-YU-A90P-01A-11D-A435-10	1782596	46394069	12734914	47	9512											
KCNC3	3748	mdanderson.org	37	chr19	50831872	50831872	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacacgtcggctgggcagtgCagcttgccggtgcggtagta	16	11	0	0	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_004977	exon1	c.G468A	p.L156L	GCAGTGCAGCTTG		44	3	0.07	60	0	0				2	0	0				T	50831872	C	T	50831872	2	4	130	1	0	0	0	0	0	0	0	1	8059	697	25	2		2	KCNC3	19	50831872	Silent	SNP	C	TCGA-YU-A90P-01A-11D-A435-10	4437803	50831872	8297111	48	9513											
STK35	140901	hgsc.bcm.edu	37	chr20	2083851	2083851	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgagaacgtggagctggcGctggctgaattctgggccct	15	12	1	2	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_080836	exon2	c.G732T	p.A244A	GCTGGCGCTGGCT		64	5	0.08	46	0	0				67	0	0				T	2083851	G	T	2083851	2	4	130	1	0	0	0	0	0	0	0	1	15356	1074	38	1		1	STK35	20	2083851	Silent	SNP	G	TCGA-YU-A90P-01A-11D-A435-10		2083851	60941669	49	9514											
SIGLEC1	6614	mdanderson.org	37	chr20	3674127	3674127	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgataggtctggagaggcGgggtgcccgaccaggggggc	22	8	1	2	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_023068	exon13	c.C3475A	p.R1159S	AGAGGCGGGGTGC		26	2	0.08	25	0	0				20	0	0				T	3674127	G	T	3674127	3	4	130	1	0	0	0	0	1	0	0	0	14359	1116	39	1	1690	1	SIGLEC1	20	3674127	Missense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10	1590276	3674127	59351393	50	9515											
ZNF341	84905	mdanderson.org	37	chr20	32378974	32378974	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcggcccccaaaaggacaAggacctgcaaacccggcggc	11	16	1	0	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_032819	exon15	c.A2195G	p.K732R	AGGACAAGGACCT		63	3	0.05	72	0	0				28	0	0				G	32378974	A	G	32378974	3	3	130	1	0	0	0	0	1	0	0	0	17913	72	3	4	2253	4	ZNF341	20	32378974	Missense_Mutation	SNP	A	TCGA-YU-A90P-01A-11D-A435-10	28704847	32378974	30646546	51	9516											
RIBC1	158787	broad.mit.edu	37	chrX	53457699	53457699	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtatttcaaaggggtctagGatccttcaaccagcagctgg	11	9	3	0	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	RIBC1	NM_001031745	exon7	c.G1019T	p.G340V	GTCTAGGATCCTT		76	3	0.04	57	0	0		20		6	0	0				T	53457699	G	T	53457699	3	4	130	1	0	0	0	0	1	0	0	0	13401	1174	41	3	1072	3	RIBC1	23	53457699	Missense_Mutation	SNP	G	TCGA-YU-A90P-01A-11D-A435-10		53457699	101812861	52	9517											
AFF2	2334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	147891442	147891442	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgtgttgaagaaatcttgCgggtgagtttaaacctttat	11	5	1	3	novel		TCGA-YU-A90P-01A-11D-A435-10	TCGA-YU-A90P-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	74fe6dad-8904-4817-9bd1-c10506bcf478	9a3ac787-1752-4e74-bb5b-2d9ec803541a	.	.	NM_002025	exon4	c.C1084T	p.R362W	ATCTTGCGGGTGA		139	48	0.35	113	0	0				0	0					T	147891442	C	T	147891442	3	4	130	1	0	0	0	0	1	0	0	0	356	759	27	1	1153	1	AFF2	23	147891442	Missense_Mutation	SNP	C	TCGA-YU-A90P-01A-11D-A435-10	94433743	147891442	7379118	53	9518											
SDHB	6390	hgsc.bcm.edu	37	chr1	17371263	17371263	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagatactcacttattaaGgtcaacttcataagtctgca	6	9	4	1	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_003000	exon2	c.C193A	p.L65I	TATTAAGGTCAAC		92	4	0.04	81	0	0				158	0	0				T	17371263	G	T	17371263	3	4	131	1	0	0	0	0	1	0	0	0	14018	1000	35	3	677	3	SDHB	1	17371263	Missense_Mutation	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10		17371263	231879358	1	9519											
EVI5	7813	broad.mit.edu	37	chr1	92979095	92979124	+	Splice_Site	DEL	TATATATATATATATATATATATATATATG	TATATATATATATATATATATATATATATG	-													tatatatatatatatatataTatatatatatatatatatat					novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	TATATATATATATATATATATATATATATG	TATATATATATATATATATATATATATATG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	EVI5	.	.	.	.	TATATATATATAT		37	33	0.89	15	0	0		94		0	0					-	92979124	TATATATATATATATATATATATATATATG	-	92979095	8	5	131	1	0	1	0	1	0	0	1	0	5317	1421	49	0		0	EVI5	1	92979095	Splice_Site	DEL	TATATATATATATATATATATATATATATG	TCGA-YU-A90Q-01A-11D-A435-10	75607832	92979095	156271526	2	9520											
NRAS	4893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	115258748	115258748	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcgcttttcccaacaccacCtgctccaaccaccaccagtt	4	19	0	0	rs121913250	bycluster	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	NRAS,NS,haematopoietic_neoplasm,+1,861	NRAS	NM_002524	exon2	c.G34A	p.G12S	CACCACCTGCTCC		196	30	0.15	208	0	0		1	861	50	16	0.32				T	115258748	C	T	115258748	3	4	131	1	0	0	0	0	1	0	0	0	10687	681	24	3	551	3	NRAS	1	115258748	Missense_Mutation	SNP	C	TCGA-YU-A90Q-01A-11D-A435-10	22279653	115258748	133991873	3	9521											
OBSCN	84033	hgsc.bcm.edu	37	chr1	228456342	228456342	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcccagacagaggtgaCgtggtacaaggatgggaaga	16	8	0	4	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	OBSCN_ENST00000570156,NS,carcinoma,-1,8	OBSCN_ENST00000570156	NM_001271223	exon19	c.C5525T	p.T1842M	AGGTGACGTGGTA		98	4	0.04	102	0	0		-1	8	1	0	0				T	228456342	C	T	228456342	3	4	131	1	0	0	0	0	1	0	0	0	10859	536	19	1	5035	1	OBSCN	1	228456342	Missense_Mutation	SNP	C	TCGA-YU-A90Q-01A-11D-A435-10	113197594	228456342	20794279	4	9522											
SMYD3	64754	mdanderson.org	37	chr1	246670511	246670511	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgaacttttccaccttcagCggctccatcctcccgcagct	7	18	1	0	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_001167740	exon1	c.G9A	p.P3P	CTTCAGCGGCTCC		76	4	0.05	51	0	0				16	0	0				T	246670511	C	T	246670511	2	4	131	1	0	0	0	0	0	0	0	1	14876	755	27	1		1	SMYD3	1	246670511	Silent	SNP	C	TCGA-YU-A90Q-01A-11D-A435-10	18214169	246670511	2580110	5	9523											
CCDC141	285025	mdanderson.org	37	chr2	179702468	179702468	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatctgccacctgcacctGccccttgaaaaaagaaaagc	7	13	1	3	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_173648	exon23	c.C3478A	p.Q1160K	GCACCTGCCCCTT		69	5	0.07	74	0	0				0	0					T	179702468	G	T	179702468	3	4	131	1	0	0	0	0	1	0	0	0	2793	1328	46	2	878	2	CCDC141	2	179702468	Missense_Mutation	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10		179702468	63496905	6	9524											
DZIP3	9666	bcgsc.ca;mdanderson.org	37	chr3	108392975	108392975	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtttgcttcatctagagcaGactgaaaaggaatgtctcaa	10	7	3	3	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	DZIP3	NM_014648	exon24	c.G2640T	p.Q880H	AGAGCAGACTGAA		68	5	0.07	81	0	0		111		84	0	0				T	108392975	G	T	108392975	3	4	131	1	0	0	0	0	1	0	0	0	4891	933	33	3	2730	3	DZIP3	3	108392975	Missense_Mutation	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10		108392975	89629455	7	9525											
MUC4	4585	mdanderson.org	37	chr3	195510780	195510780	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgacaggaagagaggtggcGtgacctgtggatgctgagga	19	5	0	4	rs77303944	bycluster;byfrequency	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_018406	exon2	c.C7671T	p.H2557H	GGTGGCGTGACCT		167	16	0.1	220	3	0.0136363636	0.009			5	0	0				A	195510780	G	A	195510780	2	1	131	1	0	0	0	0	0	0	0	1	10025	1136	40	1		1	MUC4	3	195510780	Silent	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10	87117805	195510780	2511650	8	9526											
SH3TC1	54436	mdanderson.org	37	chr4	8226907	8226907	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctcccttgccagactcaGtagaggaagctgagaccgag	11	11	2	3	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_018986	exon11	c.G1249T	p.V417L	GACTCAGTAGAGG		50	3	0.06	69	0	0				15	0	0				T	8226907	G	T	8226907	3	4	131	1	0	0	0	0	1	0	0	0	14315	1029	36	3	1287	3	SH3TC1	4	8226907	Missense_Mutation	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10		8226907	182927369	9	9527											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	55599320	55599320	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgattttggtctagccagaGacatcaagaatgattctaat	9	6	3	4	rs121913506	bycluster	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	KIT,colon,carcinoma,0,932	KIT	NM_000222	exon17	c.G2446C	p.D816H	GCCAGAGACATCA		80	28	0.35	63	0	0		0	932	253	102	0.4				C	55599320	G	C	55599320	3	2	131	1	0	0	0	0	1	0	0	0	8371	942	33	5	2512	5	KIT	4	55599320	Missense_Mutation	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10	47372413	55599320	135554956	10	9528											
CCDC158	339965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	77290777	77290777	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccttttgtgtagatcagcCtaaaaaaagagaggaatgct	9	7	1	2	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	CCDC158,NS,carcinoma,0,1	CCDC158	NM_001042784	exon11	c.1150-1G>A	.	ATCAGCCTAAAAA		79	18	0.23	82	0	0		0	1	0	0					T	77290777	C	T	77290777	5	4	131	1	0	0	0	0	0	0	1	0	2809	695	24	3	2252	3	CCDC158	4	77290777	Splice_Site	SNP	C	TCGA-YU-A90Q-01A-11D-A435-10	21691457	77290777	113863499	11	9529											
DMGDH	29958	mdanderson.org	37	chr5	78328619	78328619	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatagagcccactgactcGttgagtcggcctcccagcaa	10	13	0	4	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_013391	exon9	c.C1408A	p.R470R	TGACTCGTTGAGT		49	3	0.06	73	0	0				2	0	0				T	78328619	G	T	78328619	2	4	131	1	0	0	0	0	0	0	0	1	4609	1153	40	1		1	DMGDH	5	78328619	Silent	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10		78328619	102586641	12	9530											
GPR6	2830	mdanderson.org	37	chr6	110300885	110300885	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgtgcacctcctgcttgcCgccacttggaccgtgtccct	11	17	0	0	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_005284	exon1	c.C570A	p.A190A	GCTTGCCGCCACT		39	3	0.08	37	0	0				0	0					A	110300885	C	A	110300885	2	1	131	1	0	0	0	0	0	0	0	1	6740	639	23	1		1	GPR6	6	110300885	Silent	SNP	C	TCGA-YU-A90Q-01A-11D-A435-10		110300885	60814182	13	9531											
POM121	9883	broad.mit.edu;mdanderson.org	37	chr7	72418901	72418901	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	caccagcaagaacacagcccGaggaagggacccaataacct	9	14	0	1	rs201837093	bycluster	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	POM121	NM_001257190	exon16	c.G2892A	p.P964P	CAGCCCGAGGAAG		61	8	0.13	53	0	0		131		8	1	0.13				A	72418901	G	A	72418901	2	1	131	1	0	0	0	0	0	0	0	1	12286	1073	37	1		1	POM121	7	72418901	Silent	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10		72418901	86719762	14	9532											
PRKAR2B	5577	broad.mit.edu;mdanderson.org	37	chr7	106799908	106799908	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcagcaatggatgtgcaaGcatttgaaaggcttctggga	12	7	2	1	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	PRKAR2B	NM_002736	exon11	c.G1138T	p.A380S	GTGCAAGCATTTG		128	5	0.04	80	0	0		34		37	0	0				T	106799908	G	T	106799908	3	4	131	1	0	0	0	0	1	0	0	0	12557	971	34	2	1180	2	PRKAR2B	7	106799908	Missense_Mutation	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10	34381007	106799908	52338755	15	9533											
PLXNA4	91584	broad.mit.edu	37	chr7	131849922	131849922	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgtagaggaggaaagtaaAccaattggtcagcatcttct	10	7	3	1	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	PLXNA4	NM_020911	exon23	c.T4324C	p.F1442L	AAGTAAACCAATT		62	3	0.05	61	0	0		873		0	0					G	131849922	A	G	131849922	3	3	131	1	0	0	0	0	1	0	0	0	12169	43	2	4	1400	4	PLXNA4	7	131849922	Missense_Mutation	SNP	A	TCGA-YU-A90Q-01A-11D-A435-10	25050014	131849922	27288741	16	9534											
XKR9	389668	mdanderson.org	37	chr8	71646414	71646414	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgtcttgttattatattGttagggtactgggcactttg	10	5	1	0	rs140733779	bycluster;alternate_allele	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	XKR9,NS,carcinoma,0,1	XKR9	NM_001011720	exon5	c.G877T	p.V293F	TATATTGTTAGGG		126	5	0.04	110	0	0		0	1	2	0	0				T	71646414	G	T	71646414	3	4	131	1	0	0	0	0	1	0	0	0	17497	1377	48	3	887	3	XKR9	8	71646414	Missense_Mutation	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10		71646414	74717608	17	9535											
WISP1	8840	broad.mit.edu	37	chr8	134232843	134232843	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggtggtcggtgtgggctgCgtcctggatggggtgcgcta	21	7	0	0	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	WISP1	NM_003882	exon3	c.C369T	p.C123C	GGGCTGCGTCCTG		396	6	0.02	308	0	0		64		2	0	0				T	134232843	C	T	134232843	2	4	131	1	0	0	0	0	0	0	0	1	17431	776	27	1		1	WISP1	8	134232843	Silent	SNP	C	TCGA-YU-A90Q-01A-11D-A435-10	62586429	134232843	12131179	18	9536											
SLC39A4	55630	mdanderson.org	37	chr8	145640175	145640175	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcaggctccactcagctGctgttggagcagggcagggc	17	11	1	0	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	SLC39A4_ENST00000276833,NS,carcinoma,+1,2	SLC39A4_ENST00000276833	NM_130849	exon5	c.C910A	p.Q304K	TCAGCTGCTGTTG		79	4	0.05	62	0	0		1	2	3	0	0				T	145640175	G	T	145640175	3	4	131	1	0	0	0	0	1	0	0	0	14674	1328	46	2	1065	2	SLC39A4	8	145640175	Missense_Mutation	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10	11407332	145640175	723847	19	9537											
C11orf16	56673	mdanderson.org	37	chr11	8947472	8947472	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgatgcgcccagtgattgGccctagcagagagcagcaag	14	10	0	3	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_020643	exon5	c.C742A	p.P248T	TGATTGGCCCTAG		38	3	0.08	80	0	0				0	0					T	8947472	G	T	8947472	3	4	131	1	0	0	0	0	1	0	0	0	1635	1203	42	2	669	2	C11orf16	11	8947472	Missense_Mutation	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10		8947472	126059044	20	9538											
ATG2A	23130	mdanderson.org	37	chr11	64678133	64678133	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtggcgcagatgggcgcaGggccgagctgaggcctggga	21	9	0	2	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_015104	exon12	c.C1662A	p.P554P	GGCGCAGGGCCGA		29	3	0.1	27	0	0				58	0	0				T	64678133	G	T	64678133	2	4	131	1	0	0	0	0	0	0	0	1	1092	987	35	3		3	ATG2A	11	64678133	Silent	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10	55730661	64678133	70328383	21	9539											
B3GNT1	11041	mdanderson.org	37	chr11	66114323	66114323	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccacagcccctcgctggGcaccatgtccacatcgatca	7	18	2	0	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_006876	exon1	c.C694A	p.P232T	CGCTGGGCACCAT		44	3	0.07	66	0	0				31	0	0				T	66114323	G	T	66114323	3	4	131	1	0	0	0	0	1	0	0	0	1254	1203	42	2	561	2	B3GNT1	11	66114323	Missense_Mutation	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10	1436190	66114323	68892193	22	9540											
GRIN2B	2904	mdanderson.org	37	chr12	13716591	13716591	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttcttctcccaaggtgcaGgtaccccgctgaccacgccg	11	16	2	1	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	GRIN2B,NS,carcinoma,-1,1	GRIN2B	NM_000834	exon13	c.C3581A	p.P1194H	GGTGCAGGTACCC		43	3	0.07	41	0	0		-1	1	0	0					T	13716591	G	T	13716591	3	4	131	1	0	0	0	0	1	0	0	0	6820	1000	35	3	877	3	GRIN2B	12	13716591	Missense_Mutation	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10		13716591	120135304	23	9541											
SMARCD1	6602	hgsc.bcm.edu	37	chr12	50492743	50492743	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tccttaggtgcagcagagacGacaagaattagagcaagccc	11	10	0	3	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_003076	exon13	c.G1508T	p.R503L	AGAGACGACAAGA		96	4	0.04	83	0	0				262	0	0				T	50492743	G	T	50492743	3	4	131	1	0	0	0	0	1	0	0	0	14830	1058	37	1	1558	1	SMARCD1	12	50492743	Missense_Mutation	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10	36776152	50492743	83359152	24	9542											
AAAS	8086	broad.mit.edu;bcgsc.ca	37	chr12	53702803	53702804	+	Splice_Site	DEL	CT	CT	-													ccacatctgggcctcccagaCtctgagccagagaaaagcaa					novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	CT	CT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	AAAS	NM_015665	exon10	c.936_937del	p.312_313del	CCCAGACTCTGAG		72	9	0.13	62	0	0		46		159	0	0				-	53702804	CT	-	53702803	8	5	131	1	0	1	0	1	0	0	1	0	8	579	20	0	731	0	AAAS	12	53702803	Splice_Site	DEL	CT	TCGA-YU-A90Q-01A-11D-A435-10	3210060	53702803	80149092	25	9543											
TIMELESS	8914	broad.mit.edu	37	chr12	56817448	56817448	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcttcctcctcctcctcCtcttcttcttcctctgcccc	1	23	5	0	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	TIMELESS,NS,carcinoma,0,1	TIMELESS	NM_003920	exon17	c.G2010A	p.E670E	CTCCTCCTCTTCT		97	4	0.04	66	1	0.0151515152		107	1	121	1	0.01				T	56817448	C	T	56817448	2	4	131	1	0	0	0	0	0	0	0	1	15963	680	24	3		3	TIMELESS	12	56817448	Silent	SNP	C	TCGA-YU-A90Q-01A-11D-A435-10	3114645	56817448	77034447	26	9544											
POC1B	282809	mdanderson.org	37	chr12	89885738	89885738	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcgtacccagtgtgtatGtcgatacaaggaatacagga	11	8	0	0	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_172240	exon4	c.C427A	p.H143N	GTGTATGTCGATA		71	4	0.06	46	0	0				6	0	0				T	89885738	G	T	89885738	3	4	131	1	0	0	0	0	1	0	0	0	12223	1377	48	3	1045	3	POC1B	12	89885738	Missense_Mutation	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10	33068290	89885738	43966157	27	9545											
CHFR	55743	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	133424713	133424713	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgttgttgttcagcacgccGtccagacacttgtcacccag	9	14	2	1	rs372404283		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_001161344	exon14	c.C1641T	p.D547D	CACGCCGTCCAGA		135	6	0.04	109	0	0				54	1	0.02				A	133424713	G	A	133424713	2	1	131	1	0	0	0	0	0	0	0	1	3359	1136	40	1		1	CHFR	12	133424713	Silent	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10	43538975	133424713	427182	28	9546											
MTMR6	9107	mdanderson.org	37	chr13	25840300	25840300	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggcatcagacaactgccaGtgtgagtttggcactcccat	10	11	1	2	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_004685	exon4	c.C429A	p.H143Q	CTGCCAGTGTGAG		41	3	0.07	62	0	0				9	0	0				T	25840300	G	T	25840300	3	4	131	1	0	0	0	0	1	0	0	0	9994	1020	36	3	1480	3	MTMR6	13	25840300	Missense_Mutation	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10		25840300	89329578	29	9547											
FARP1	10160	mdanderson.org	37	chr13	99093031	99093031	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accgcggcaacacaatggtgCacgtgtgctggcaccgcaac	12	14	0	0	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_005766	exon24	c.C2737T	p.H913Y	ATGGTGCACGTGT		36	3	0.08	49	0	0				25	0	0				T	99093031	C	T	99093031	3	4	131	1	0	0	0	0	1	0	0	0	5708	710	25	2	3050	2	FARP1	13	99093031	Missense_Mutation	SNP	C	TCGA-YU-A90Q-01A-11D-A435-10	73252731	99093031	16076847	30	9548											
TMEM55B	90809	mdanderson.org	37	chr14	20928916	20928916	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	caggtgatcataggggcactCccactgtccgggctagttaa	12	11	1	1	rs149796661	alternate_allele	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	TMEM55B,NS,carcinoma,-2,1	TMEM55B	NM_001100814	exon2	c.G252T	p.G84G	GGCACTCCCACTG		42	3	0.07	50	0	0		-2	1	63	0	0				A	20928916	C	A	20928916	2	1	131	1	0	0	0	0	0	0	0	1	16241	842	30	3		3	TMEM55B	14	20928916	Silent	SNP	C	TCGA-YU-A90Q-01A-11D-A435-10		20928916	86420624	31	9549											
LRRK1	79705	mdanderson.org	37	chr15	101593438	101593438	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tccctggcagacaccatgctGaggcacctgcgggccaccga	12	16	0	2	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_024652	exon26	c.G3867A	p.L1289L	CATGCTGAGGCAC		11	2	0.18	18	0	0				0	0					A	101593438	G	A	101593438	2	1	131	1	0	0	0	0	0	0	0	1	9076	1277	45	3		3	LRRK1	15	101593438	Silent	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10		101593438	937954	32	9550											
COG7	91949	broad.mit.edu	37	chr16	23415150	23415150	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggttgtggttgcttgacccTttttcctaagacaagaaaat	9	7	0	3	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	COG7	NM_153603	exon13	c.A1668G	p.K556K	TGACCCTTTTTCC		66	3	0.05	94	0	0		62		26	0	0				C	23415150	T	C	23415150	2	2	131	1	0	0	0	0	0	0	0	1	3686	1606	56	4		4	COG7	16	23415150	Silent	SNP	T	TCGA-YU-A90Q-01A-11D-A435-10		23415150	66939603	33	9551											
RRAD	6236	mdanderson.org	37	chr16	66956208	66956208	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cattgtggtgcaatgccgctGatgtctcaatgaacttgcag	11	9	1	2	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_004165	exon5	c.C698A	p.S233X	GCCGCTGATGTCT		39	3	0.08	56	0	0				14	0	0				T	66956208	G	T	66956208	4	4	131	1	0	0	0	0	0	1	0	0	13722	1294	45	3	232	3	RRAD	16	66956208	Nonsense_Mutation	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10	43541058	66956208	23398545	34	9552											
KRTAP4-4	84616	mdanderson.org	37	chr17	39316640	39316640	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcctgcagcagctggggcGgcagcaggtggtcctacagc	18	12	0	0	rs73983195	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	KRTAP4-4,colon,carcinoma,0,1	KRTAP4-4	NM_032524	exon1	c.C304A	p.R102S	TGGGGCGGCAGCA		45	3	0.07	52	0	0		0	1	0	0					T	39316640	G	T	39316640	3	4	131	1	0	0	0	0	1	0	0	0	8595	1116	39	1	200	1	KRTAP4-4	17	39316640	Missense_Mutation	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10		39316640	41878570	35	9553											
ATP6V0A1	535	hgsc.bcm.edu	37	chr17	40653235	40653235	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaggaattcagtgtttcctGgtagtggttgcactactgtg	12	6	1	0	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_001130020	exon17	c.G1938T	p.L646L	TTTCCTGGTAGTG		95	5	0.05	101	0	0				41	0	0				T	40653235	G	T	40653235	2	4	131	1	0	0	0	0	0	0	0	1	1166	1335	47	3		3	ATP6V0A1	17	40653235	Silent	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10	1336595	40653235	40541975	36	9554											
ZNF397	84307	mdanderson.org	37	chr18	32825534	32825534	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agagaccttatagatgtgatGtatgtgggcacagcttcaag	12	6	1	3	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_001135178	exon4	c.G865T	p.V289L	TGTGATGTATGTG		51	3	0.06	95	0	0				47	0	0				T	32825534	G	T	32825534	3	4	131	1	0	0	0	0	1	0	0	0	17939	1377	48	3	875	3	ZNF397	18	32825534	Missense_Mutation	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10		32825534	45251714	37	9555											
NANOS3	342977	mdanderson.org	37	chr19	13988167	13988167	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggctgagcccccagccagaGccagagccaatgctggagcc	13	15	0	3	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_001098622	exon1	c.G105A	p.E35E	GCCAGAGCCAGAG		29	3	0.1	30	0	0				916	0	0				A	13988167	G	A	13988167	2	1	131	1	0	0	0	0	0	0	0	1	10200	962	34	2		2	NANOS3	19	13988167	Silent	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10		13988167	45140816	38	9556											
NFATC2	4773	mdanderson.org	37	chr20	50049078	50049078	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgctccgctggtagagtaCggccgctgggttctgttgct	14	11	1	1	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	NFATC2,colon,carcinoma,0,1	NFATC2	NM_012340	exon9	c.G2248A	p.V750I	AGAGTACGGCCGC		32	3	0.09	40	0	0		0	1	0	0					T	50049078	C	T	50049078	3	4	131	1	0	0	0	0	1	0	0	0	10408	536	19	1	585	1	NFATC2	20	50049078	Missense_Mutation	SNP	C	TCGA-YU-A90Q-01A-11D-A435-10		50049078	12976442	39	9557											
ZNF831	128611	mdanderson.org	37	chr20	57767022	57767022	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaagccgtgcgccctgcaGcggcagcaggcgacggcagc	18	14	0	0	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_178457	exon1	c.G948T	p.Q316H	CCTGCAGCGGCAG		21	3	0.14	26	0	0				0	0					T	57767022	G	T	57767022	3	4	131	1	0	0	0	0	1	0	0	0	18231	962	34	2	950	2	ZNF831	20	57767022	Missense_Mutation	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10	7717944	57767022	5258498	40	9558											
STMN3	50861	mdanderson.org	37	chr20	62275591	62275591	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtactggtagacggtattggGgtgcggctgtgtgtagaagc	18	5	0	2	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_015894	exon2	c.C91A	p.P31T	TATTGGGGTGCGG		18	2	0.11	35	0	0				34	0	0				T	62275591	G	T	62275591	3	4	131	1	0	0	0	0	1	0	0	0	15365	1232	43	3	467	3	STMN3	20	62275591	Missense_Mutation	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10	4508569	62275591	749929	41	9559											
SON	6651	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr21	34923420	34923420	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcagcctctggcaacagGggtgctggagttgccagggc	19	10	1	0	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_032195	exon3	c.G1883T	p.G628V	CAACAGGGGTGCT		105	7	0.07	65	0	0				104	1	0.01				T	34923420	G	T	34923420	3	4	131	1	0	0	0	0	1	0	0	0	14979	1232	43	3	1893	3	SON	21	34923420	Missense_Mutation	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10		34923420	13206475	42	9560											
CBS	875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	44485607	44485607	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcgtcctcacaatctcagCccccagtgcccgcagcacgt	10	18	2	0	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_000071	exon7	c.G556A	p.A186T	TCTCAGCCCCCAG		103	24	0.23	76	0	0				5	2	0.4				T	44485607	C	T	44485607	3	4	131	1	0	0	0	0	1	0	0	0	2729	739	26	2	1143	2	CBS	21	44485607	Missense_Mutation	SNP	C	TCGA-YU-A90Q-01A-11D-A435-10	9562187	44485607	3644288	43	9561											
KRTAP10-10	353333	hgsc.bcm.edu	37	chr21	46057832	46057832	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgctctggggcttccacTtcatgctgccagcagtctag	12	12	3	0	rs149762795	bycluster;byfrequency;by1000genomes	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	KRTAP10-10,NS,carcinoma,0,1	KRTAP10-10	NM_181688	exon1	c.T498A	p.T166T	TTCCACTTCATGC		70	5	0.07	41	0	0	0.007	0	1	0	0					A	46057832	T	A	46057832	2	1	131	1	0	0	0	0	0	0	0	1	8548	1596	56	5		5	KRTAP10-10	21	46057832	Silent	SNP	T	TCGA-YU-A90Q-01A-11D-A435-10	1572225	46057832	2072063	44	9562											
TXNRD2	10587	mdanderson.org	37	chr22	19885565	19885565	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcctccagcactacctgGtcgaagccgcggagggggat	17	12	0	0	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	.	.	.	.	TACCTGGTCGAAG		17	3	0.18	32	0	0				18	0	0				T	19885565	G	T	19885565	3	4	131	1	0	0	0	0	1	0	0	0	16869	1252	44	3	835	3	TXNRD2	22	19885565	Missense_Mutation	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10		19885565	31419001	45	9563											
PNPLA4	8228	broad.mit.edu	37	chrX	7868821	7868821	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctcttgcttgggggaaaaAgggcttggttgagtctcacc	13	9	2	1	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	PNPLA4	NM_004650	exon7	c.T668C	p.L223P	GGAAAAAGGGCTT		322	4	0.01	292	1	0.0034246575		24		37	0	0				G	7868821	A	G	7868821	3	3	131	1	0	0	0	0	1	0	0	0	12214	72	3	4	97	4	PNPLA4	23	7868821	Missense_Mutation	SNP	A	TCGA-YU-A90Q-01A-11D-A435-10		7868821	147401739	46	9564											
REPS2	9185	mdanderson.org	37	chrX	17072945	17072945	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atttagggagcttagtgatgCtgactgtgatggagccctga	14	6	0	4	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_004726	exon8	c.C986T	p.A329V	GTGATGCTGACTG		69	4	0.06	55	0	0				1	0	0				T	17072945	C	T	17072945	3	4	131	1	0	0	0	0	1	0	0	0	13280	797	28	2	1016	2	REPS2	23	17072945	Missense_Mutation	SNP	C	TCGA-YU-A90Q-01A-11D-A435-10	9204124	17072945	138197615	47	9565											
FAM104B	90736	mdanderson.org	37	chrX	55172630	55172630	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atacccctcatgcaagaactGgggaaagtttgcatcgggtt	11	9	1	1	rs113263757	bycluster	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_001166700	exon3	c.C238T	p.Q80X	AGAACTGGGGAAA		36	3	0.08	34	1	0.0294117647				33	0	0				A	55172630	G	A	55172630	4	1	131	1	0	0	0	0	0	1	0	0	5417	1357	47	3	217	3	FAM104B	23	55172630	Nonsense_Mutation	SNP	G	TCGA-YU-A90Q-01A-11D-A435-10	38099685	55172630	100097930	48	9566			1	20		2	2	16	N	G_C	2.422706e-05
FAM104B	90736	mdanderson.org	37	chrX	55172645	55172645	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gaactggggaaagtttgcatCgggttcagtaacaatctggt	13	6	2	0	rs1047042	bycluster;byfrequency;alternate_allele	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_001166700	exon3	c.G223C	p.D75H	TTGCATCGGGTTC		36	3	0.08	31	1	0.0322580645				49	0	0				G	55172645	C	G	55172645	3	3	131	1	0	0	0	0	1	0	0	0	5417	884	31	5	232	5	FAM104B	23	55172645	Missense_Mutation	SNP	C	TCGA-YU-A90Q-01A-11D-A435-10	15	55172645	100097915	49	9567			1	20		2	2	16	N	G_C	2.422706e-05
RLIM	51132	ucsc.edu	37	chrX	73811755	73811755	+	Silent	SNP	T	T	G	0	1	0	0	1	0	1	1	0	0	0	0	cttgaactggaactggaactCgaactggaactggaactcga	11	9	0	1	rs7883332	bycluster;byfrequency;by1000genomes	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	RLIM	NM_183353	exon5	c.G1395C	p.S465S	GGAACTCGAACTG		64	8	0.13	45	9	0.2		90		31	0	0				G	73811755	T	G	73811755	2	3	131	1	0	0	0	0	0	0	0	1	13441	871	31	5		5	RLIM	23	73811755	Silent	SNP	T	TCGA-YU-A90Q-01A-11D-A435-10	18639110	73811755	81458805	50	9568											
ESPN	83715	broad.mit.edu	37	chr1	6504676	6504676	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acctcagctcgcctaccagcAccctctccaactacgactcc	4	21	2	0	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	ESPN	NM_031475	exon6	c.A1126C	p.T376P	ACCAGCACCCTCT		169	30	0.18	148	30	0.2027027027		32		0	0					C	6504676	A	C	6504676	3	2	132	1	0	0	0	0	1	0	0	0	5282	159	6	4	1148	4	ESPN	1	6504676	Missense_Mutation	SNP	A	TCGA-YU-A90S-01A-11D-A435-10		6504676	242745945	1	9569											
PRPF38A	84950	mdanderson.org	37	chr1	52876860	52876860	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtctgtgatatcattctGccccgactacaggtaagaaa	9	9	3	3	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_032864	exon4	c.G486T	p.L162L	CATTCTGCCCCGA		49	3	0.06	49	0	0				114	0	0				T	52876860	G	T	52876860	2	4	132	1	0	0	0	0	0	0	0	1	12618	1306	46	2		2	PRPF38A	1	52876860	Silent	SNP	G	TCGA-YU-A90S-01A-11D-A435-10	46372184	52876860	196373761	2	9570											
LRP8	7804	broad.mit.edu;bcgsc.ca	37	chr1	53741395	53741395	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cacatgtcccatccccacacTggaactcgtccccacggcag	7	19	0	0	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	LRP8	NM_004631	exon6	c.A914G	p.Q305R	CCACACTGGAACT		108	6	0.06	89	0	0		58		1	0	0				C	53741395	T	C	53741395	3	2	132	1	0	0	0	0	1	0	0	0	9007	1580	55	4	2033	4	LRP8	1	53741395	Missense_Mutation	SNP	T	TCGA-YU-A90S-01A-11D-A435-10	864535	53741395	195509226	3	9571											
TCHH	7062	broad.mit.edu	37	chr1	152082647	152082647	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgcggtactgcctctcccActcctggcgccttctcttct	7	17	3	0	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	TCHH,extremity,malignant_melanoma,0,1	TCHH	NM_007113	exon3	c.T3046C	p.W1016R	TCTCCCACTCCTG		155	6	0.04	110	6	0.0545454545		275	1	0	0					G	152082647	A	G	152082647	3	3	132	1	0	0	0	0	1	0	0	0	15759	159	6	4	2789	4	TCHH	1	152082647	Missense_Mutation	SNP	A	TCGA-YU-A90S-01A-11D-A435-10	98341252	152082647	97167974	4	9572											
PKP1	5317	mdanderson.org	37	chr1	201294223	201294223	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtacttctccagcagcatGctcaacaacatcatcaacct	4	15	4	0	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_000299	exon12	c.G2052T	p.M684I	CAGCATGCTCAAC		93	4	0.04	85	0	0				0	0					T	201294223	G	T	201294223	3	4	132	1	0	0	0	0	1	0	0	0	12031	1319	46	2	2098	2	PKP1	1	201294223	Missense_Mutation	SNP	G	TCGA-YU-A90S-01A-11D-A435-10	49211576	201294223	47956398	5	9573											
ZC3H11A	9877	broad.mit.edu	37	chr1	203821424	203821424	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatgattttgagaaactaaTatgggagatttcaggaggca	13	3	1	3	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	ZC3H11A	NM_014827	exon20	c.T2330C	p.I777T	AACTAATATGGGA		357	5	0.01	374	1	0.0026737968		71		104	0	0				C	203821424	T	C	203821424	3	2	132	1	0	0	0	0	1	0	0	0	17618	1406	49	4	2392	4	ZC3H11A	1	203821424	Missense_Mutation	SNP	T	TCGA-YU-A90S-01A-11D-A435-10	2527201	203821424	45429197	6	9574											
EPCAM	4072	broad.mit.edu	37	chr2	47596282	47596282	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acacctgtggagagggccgcGccccaactgcagcgccgggg	16	15	0	1	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	EPCAM	.	.	.	.	GGCCGCGCCCCAA		21	5	0.24	27	2	0.0740740741		27		2	0	0				T	47596282	G	T	47596282	3	4	132	1	0	0	0	0	1	0	0	0	5190	1102	38	1		1	EPCAM	2	47596282	Missense_Mutation	SNP	G	TCGA-YU-A90S-01A-11D-A435-10		47596282	195603091	7	9575											
STAMBP	10617	broad.mit.edu	37	chr2	74077544	74077544	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acccatgttctcatccccaaGcaaagtgctgggtctgatta	8	12	2	1	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	STAMBP	NM_006463	exon8	c.G909T	p.K303N	CCCCAAGCAAAGT		320	5	0.02	283	0	0		37		52	0	0				T	74077544	G	T	74077544	3	4	132	1	0	0	0	0	1	0	0	0	15305	962	34	2	931	2	STAMBP	2	74077544	Missense_Mutation	SNP	G	TCGA-YU-A90S-01A-11D-A435-10	26481262	74077544	169121829	8	9576											
DES	1674	broad.mit.edu	37	chr2	220286080	220286080	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacgattccctgatgaggCagatgcgggaattggaggac	15	7	0	4	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	DES	NM_001927	exon6	c.C1042A	p.Q348K	ATGAGGCAGATGC		130	7	0.05	97	1	0.0103092784		53		8	0	0				A	220286080	C	A	220286080	3	1	132	1	0	0	0	0	1	0	0	0	4477	711	25	2	1064	2	DES	2	220286080	Missense_Mutation	SNP	C	TCGA-YU-A90S-01A-11D-A435-10	146208536	220286080	22913293	9	9577											
ZNF621	285268	mdanderson.org	37	chr3	40573808	40573808	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaagccctttaagtgtaagGagtgtggcaaagctttcaag	11	6	1	0	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	ZNF621,NS,carcinoma,0,1	ZNF621	NM_001098414	exon5	c.G547T	p.E183X	TGTAAGGAGTGTG		54	3	0.06	46	0	0		0	1	5	0	0				T	40573808	G	T	40573808	4	4	132	1	0	0	0	0	0	1	0	0	18101	1175	41	3	561	3	ZNF621	3	40573808	Nonsense_Mutation	SNP	G	TCGA-YU-A90S-01A-11D-A435-10		40573808	157448622	10	9578											
GLYCTK	132158	mdanderson.org	37	chr3	52325040	52325040	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgcggaggacaacctcccgGaccgcgatgcgctgcgggct	16	14	0	0	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_145262	exon3	c.G442T	p.D148Y	CTCCCGGACCGCG		50	3	0.06	61	0	0				31	0	0				T	52325040	G	T	52325040	3	4	132	1	0	0	0	0	1	0	0	0	6523	1174	41	3	448	3	GLYCTK	3	52325040	Missense_Mutation	SNP	G	TCGA-YU-A90S-01A-11D-A435-10	11751232	52325040	145697390	11	9579											
CCDC37	348807	broad.mit.edu	37	chr3	126135309	126135309	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgaggccgagcatcagcgcGccttccgcgactacacgacc	11	18	1	0	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	CCDC37	NM_182628	exon5	c.G376T	p.A126S	CAGCGCGCCTTCC		91	6	0.07	63	1	0.0158730159		69		0	0					T	126135309	G	T	126135309	3	4	132	1	0	0	0	0	1	0	0	0	2828	1087	38	1	390	1	CCDC37	3	126135309	Missense_Mutation	SNP	G	TCGA-YU-A90S-01A-11D-A435-10	73810269	126135309	71887121	12	9580											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	55594221	55594221	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagccctcatgtctgaactcAaagtcctgagttaccttggt	8	11	3	2	rs121913512	bycluster	TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	KIT,NS,malignant_melanoma,0,38	KIT	NM_000222	exon13	c.A1924G	p.K642E	GAACTCAAAGTCC		160	8	0.05	164	0	0		0	38	29	13	0.45				G	55594221	A	G	55594221	3	3	132	1	0	0	0	0	1	0	0	0	8371	131	5	4	1974	4	KIT	4	55594221	Missense_Mutation	SNP	A	TCGA-YU-A90S-01A-11D-A435-10		55594221	135560055	13	9581											
UGT2B11	10720	mdanderson.org	37	chr4	70066408	70066408	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggttgatcatgttgaattCttgataatttcataatattc	6	5	3	3	rs200919649		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_001073	exon6	c.G1340T	p.R447I	TGAATTCTTGATA		91	7	0.08	104	1	0.0096153846				0	0					A	70066408	C	A	70066408	3	1	132	1	0	0	0	0	1	0	0	0	17016	913	32	3	253	3	UGT2B11	4	70066408	Missense_Mutation	SNP	C	TCGA-YU-A90S-01A-11D-A435-10	14472187	70066408	121087868	14	9582											
TRIP13	9319	mdanderson.org	37	chr5	908524	908524	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gggcgggcaccgagccatcaGatgccatccgcgtggtcaat	14	13	2	1	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_001166260	exon9	c.G814T	p.D272Y	CCATCAGATGCCA		40	3	0.08	50	0	0				8	0	0				T	908524	G	T	908524	3	4	132	1	0	0	0	0	1	0	0	0	16617	942	33	3	848	3	TRIP13	5	908524	Missense_Mutation	SNP	G	TCGA-YU-A90S-01A-11D-A435-10		908524	180006736	15	9583											
NEUROG1	4762	mdanderson.org	37	chr5	134871333	134871333	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gataggtcactgccgctgctGctggcgcagtcgaggtcgga	16	11	1	0	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_006161	exon1	c.C48A	p.S16R	GCTGCTGCTGGCG		26	3	0.12	21	0	0				0	0					T	134871333	G	T	134871333	3	4	132	1	0	0	0	0	1	0	0	0	10398	1310	46	2	669	2	NEUROG1	5	134871333	Missense_Mutation	SNP	G	TCGA-YU-A90S-01A-11D-A435-10	133962809	134871333	46043927	16	9584											
SLC4A9	83697	mdanderson.org	37	chr5	139747091	139747091	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagctgccctgcctgccctGctgctgtctatcctcatctt	8	17	3	0	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_001258428	exon15	c.G2172T	p.L724L	TGCCCTGCTGCTG		55	3	0.05	76	0	0				0	0					T	139747091	G	T	139747091	2	4	132	1	0	0	0	0	0	0	0	1	14714	1306	46	2		2	SLC4A9	5	139747091	Silent	SNP	G	TCGA-YU-A90S-01A-11D-A435-10	4875758	139747091	41168169	17	9585											
MDC1	9656	broad.mit.edu	37	chr6	30681594	30681594	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	acttacctacttcctcctccGagtcctcagccaacagaagc	5	17	1	1	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	MDC1	NM_014641	exon3	c.C503A	p.S168X	TCCTCCGAGTCCT		129	5	0.04	133	0	0		218		3	0	0				T	30681594	G	T	30681594	4	4	132	1	0	0	0	0	0	1	0	0	9452	1059	37	1	5818	1	MDC1	6	30681594	Nonsense_Mutation	SNP	G	TCGA-YU-A90S-01A-11D-A435-10		30681594	140433473	18	9586											
SKIV2L	6499	bcgsc.ca;mdanderson.org	37	chr6	31933780	31933780	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagatggcagacctgcaccGcatgatgatggtgagcgggc	16	10	0	5	rs372669695	alternate_allele	TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	SKIV2L	NM_006929	exon18	c.G2192T	p.R731L	TGCACCGCATGAT		59	5	0.08	65	0	0		97		50	0	0				T	31933780	G	T	31933780	3	4	132	1	0	0	0	0	1	0	0	0	14413	1087	38	1	2262	1	SKIV2L	6	31933780	Missense_Mutation	SNP	G	TCGA-YU-A90S-01A-11D-A435-10	1252186	31933780	139181287	19	9587											
UNC93A	54346	ucsc.edu	37	chr6	167728900	167728901	+	Missense_Mutation	DNP	TC	TC	CG													accccacgctccaggacaggTcaaccaggcagaggatgaag					novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	TC	TC					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	UNC93A,ear,carcinoma,+1,2	UNC93A	NM_018974	exon8	c.C1335G	p.V445A	GACAGGTCAACCA		80	11	0.14	58	8	0.1379310345		66	2	0	0					CG	167728901	TC	CG	167728900	3	2	132	1	0	0	0	0	1	0	0	0	17055	1667	58	4	1364	4	UNC93A	6	167728900	Missense_Mutation	DNP	TC	TCGA-YU-A90S-01A-11D-A435-10	135795120	167728900	3386167	20	9588											
PKN3	29941	mdanderson.org	37	chr9	131467791	131467791	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	cgggagctgcacgcccgaatCctgctgcccggccctgggcc	14	18	0	0	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_013355	exon2	c.C234A	p.I78I	CCGAATCCTGCTG		44	3	0.07	66	0	0				1	0	0				A	131467791	C	A	131467791	2	1	132	1	0	0	0	0	0	0	0	1	12028	845	30	3		3	PKN3	9	131467791	Silent	SNP	C	TCGA-YU-A90S-01A-11D-A435-10		131467791	9745640	21	9589											
EHMT1	79813	mdanderson.org	37	chr9	140707983	140707983	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatatcactcatctgcagGtgagtgacggcagatgaagg	13	7	3	4	rs137852724		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_024757	exon21	c.3180+1G>T	.	CTGCAGGTGAGTG		45	3	0.07	25	0	0				0	0					T	140707983	G	T	140707983	5	4	132	1	0	0	0	0	0	0	1	0	5009	1275	44	3	3312	3	EHMT1	9	140707983	Splice_Site	SNP	G	TCGA-YU-A90S-01A-11D-A435-10	9240192	140707983	505448	22	9590											
PFKFB3	5209	mdanderson.org	37	chr10	6263368	6263368	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtgctctgagcaagttcGtggaggagcagaacctgaag	14	9	1	3	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_004566	exon9	c.G856T	p.V286L	AAGTTCGTGGAGG		64	3	0.05	85	0	0				16	0	0				T	6263368	G	T	6263368	3	4	132	1	0	0	0	0	1	0	0	0	11809	1145	40	1	910	1	PFKFB3	10	6263368	Missense_Mutation	SNP	G	TCGA-YU-A90S-01A-11D-A435-10		6263368	129271379	23	9591											
PCDH15	65217	broad.mit.edu	37	chr10	55582229	55582229	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaggagaaggaggagaaaTaggaggaggagggggaaggg	24	0	0	2	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	PCDH15_ENST00000417177,colon,carcinoma,0,2	PCDH15	NM_001142763	exon35	c.A5278C	p.I1760L	GAGAAATAGGAGG		51	6	0.12	51	2	0.0392156863		1715	2	0	0					G	55582229	T	G	55582229	3	3	132	1	0	0	0	0	1	0	0	0	11557	1406	49	4	2220	4	PCDH15	10	55582229	Missense_Mutation	SNP	T	TCGA-YU-A90S-01A-11D-A435-10	49318861	55582229	79952518	24	9592											
FRAT2	23401	mdanderson.org	37	chr10	99093719	99093719	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcttgcggggcccgtggctGcaaccgcggcgacggctcgt	17	15	0	0	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_012083	exon1	c.C611A	p.A204E	GTGGCTGCAACCG		15	2	0.13	15	0	0				53	0	0				T	99093719	G	T	99093719	3	4	132	1	0	0	0	0	1	0	0	0	6077	1319	46	2	94	2	FRAT2	10	99093719	Missense_Mutation	SNP	G	TCGA-YU-A90S-01A-11D-A435-10	43511490	99093719	36441028	25	9593											
RRP12	23223	mdanderson.org	37	chr10	99131871	99131871	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtatagcttactgatggCagcttcgtcagcacacggag	13	9	1	1	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_015179	exon20	c.G2302T	p.A768S	TGATGGCAGCTTC		53	3	0.06	60	1	0.0166666667				58	0	0				A	99131871	C	A	99131871	3	1	132	1	0	0	0	0	1	0	0	0	13737	710	25	2	1651	2	RRP12	10	99131871	Missense_Mutation	SNP	C	TCGA-YU-A90S-01A-11D-A435-10	38152	99131871	36402876	26	9594											
TMEM179B	374395	broad.mit.edu	37	chr11	62556810	62556810	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccatctcagctatagccGtcttcctggtcttggtgtct	10	12	4	0	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	TMEM179B,NS,carcinoma,0,1	TMEM179B	NM_199337	exon3	c.G331T	p.V111F	ATAGCCGTCTTCC		181	4	0.02	152	0	0		13	1	196	0	0				T	62556810	G	T	62556810	3	4	132	1	0	0	0	0	1	0	0	0	16156	1145	40	1	341	1	TMEM179B	11	62556810	Missense_Mutation	SNP	G	TCGA-YU-A90S-01A-11D-A435-10		62556810	72449706	27	9595											
ESRRA	2101	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr11	64082666	64082666	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggctgccctgctgcaactAgtgcggcggctgcaggccct	16	14	0	0	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	ESRRA,colon,carcinoma,0,1	ESRRA	NM_004451	exon6	c.A936G	p.L312L	GCAACTAGTGCGG		73	5	0.07	66	0	0		0	1	71	0	0				G	64082666	A	G	64082666	2	3	132	1	0	0	0	0	0	0	0	1	5288	407	15	4		4	ESRRA	11	64082666	Silent	SNP	A	TCGA-YU-A90S-01A-11D-A435-10	1525856	64082666	70923850	28	9596											
TECTA	7007	broad.mit.edu	37	chr11	120980079	120980079	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acagagagaccatggagcctGccatcttgaaaagagccacc	10	12	1	4	rs370688947	alternate_allele	TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	TECTA	NM_005422	exon3	c.G358A	p.A120T	GAGCCTGCCATCT		144	4	0.03	137	0	0		329		1	0	0				A	120980079	G	A	120980079	3	1	132	1	0	0	0	0	1	0	0	0	15805	1319	46	2	368	2	TECTA	11	120980079	Missense_Mutation	SNP	G	TCGA-YU-A90S-01A-11D-A435-10	56897413	120980079	14026437	29	9597											
BCL11B	64919	hgsc.bcm.edu	37	chr14	99641568	99641568	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctcctcctcCtcgtcctcctcctccggctc	3	25	0	0	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	BCL11B,colon,carcinoma,0,1	BCL11B	NM_138576	exon4	c.G1605C	p.E535D	CTCCTCCTCGTCC		16	2	0.13	14	0	0		0	1	0	0					G	99641568	C	G	99641568	3	3	132	1	0	0	0	0	1	0	0	0	1362	680	24	5	1083	5	BCL11B	14	99641568	Missense_Mutation	SNP	C	TCGA-YU-A90S-01A-11D-A435-10		99641568	7707972	30	9598											
CDC42BPB	9578	mdanderson.org	37	chr14	103410270	103410270	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacatgagctcctgcgcgcGtgccctccggccttgcgggt	13	17	0	1	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_006035	exon30	c.C4366T	p.R1456C	GCGCGCGTGCCCT		54	3	0.06	46	0	0				32	0	0				A	103410270	G	A	103410270	3	1	132	1	0	0	0	0	1	0	0	0	3095	1145	40	1	801	1	CDC42BPB	14	103410270	Missense_Mutation	SNP	G	TCGA-YU-A90S-01A-11D-A435-10	3768702	103410270	3939270	31	9599											
RAB11A	8766	mdanderson.org	37	chr15	66170130	66170130	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagctgtaggtgccttattGgtttatgacattgctaaaca	11	6	0	1	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_004663	exon3	c.G267T	p.L89F	CTTATTGGTTTAT		138	5	0.04	88	0	0				114	0	0				T	66170130	G	T	66170130	3	4	132	1	0	0	0	0	1	0	0	0	12942	1339	47	3	277	3	RAB11A	15	66170130	Missense_Mutation	SNP	G	TCGA-YU-A90S-01A-11D-A435-10		66170130	36361262	32	9600											
WDR24	84219	mdanderson.org	37	chr16	737362	737362	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atctccttggcacggtgcgtGgtcatgtcccagaccttcac	10	14	3	1	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_032259	exon3	c.C714A	p.T238T	GTGCGTGGTCATG		32	3	0.09	39	0	0				16	0	0				T	737362	G	T	737362	2	4	132	1	0	0	0	0	0	0	0	1	17340	1335	47	3		3	WDR24	16	737362	Silent	SNP	G	TCGA-YU-A90S-01A-11D-A435-10		737362	89617391	33	9601											
HSF4	3299	mdanderson.org	37	chr16	67203614	67203614	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccctgggcctgcctgggGctttaaccatttatagcact	10	13	0	0	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_001040667	exon15	c.G1405T	p.A469S	CCTGGGGCTTTAA		53	3	0.06	49	0	0				7	0	0				T	67203614	G	T	67203614	3	4	132	1	0	0	0	0	1	0	0	0	7438	1203	42	2	1469	2	HSF4	16	67203614	Missense_Mutation	SNP	G	TCGA-YU-A90S-01A-11D-A435-10	66466252	67203614	23151139	34	9602											
ANKRD11	29123	broad.mit.edu;bcgsc.ca	37	chr16	89351844	89351844	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgtttcttttctgtagtccTttttcaataggtgcttgtcg	8	8	3	0	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	ANKRD11	NM_001256183	exon9	c.A1106G	p.K369R	TAGTCCTTTTTCA		177	7	0.04	188	1	0.0053191489		195		34	0	0				C	89351844	T	C	89351844	3	2	132	1	0	0	0	0	1	0	0	0	635	1609	56	4	6905	4	ANKRD11	16	89351844	Missense_Mutation	SNP	T	TCGA-YU-A90S-01A-11D-A435-10	22148230	89351844	1002909	35	9603											
SPOP	8405	broad.mit.edu	37	chr17	47688679	47688679	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagcctggaattcctggccGgcaacacacaagcagcagtc	11	13	0	1	rs148282868		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	SPOP	NM_001007228	exon6	c.C621T	p.A207A	CTGGCCGGCAACA		138	3	0.02	99	0	0		91		40	0	0				A	47688679	G	A	47688679	2	1	132	1	0	0	0	0	0	0	0	1	15139	1103	39	1		1	SPOP	17	47688679	Silent	SNP	G	TCGA-YU-A90S-01A-11D-A435-10		47688679	33506531	36	9604											
PRPSAP1	5635	mdanderson.org	37	chr17	74349677	74349677	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggccgagaagactcggtaGccggtgcgagcggcgttcat	16	10	1	2	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_002766	exon1	c.C108A	p.G36G	TCGGTAGCCGGTG		47	3	0.06	29	0	0				35	0	0				T	74349677	G	T	74349677	2	4	132	1	0	0	0	0	0	0	0	1	12632	958	34	2		2	PRPSAP1	17	74349677	Silent	SNP	G	TCGA-YU-A90S-01A-11D-A435-10	26660998	74349677	6845533	37	9605											
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr19	10610444	10610444	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggccatgaactgggcggccGgtgcatcctggtacttgacc	15	12	0	2	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_012289	exon2	c.C266T	p.P89L	GCGGCCGGTGCAT		89	4	0.04	87	0	0				40	0	0				A	10610444	G	A	10610444	3	1	132	1	0	0	0	0	1	0	0	0	8183	1116	39	1	1628	1	KEAP1	19	10610444	Missense_Mutation	SNP	G	TCGA-YU-A90S-01A-11D-A435-10		10610444	48518539	38	9606											
PSG4	5672	hgsc.bcm.edu;mdanderson.org	37	chr19	43699192	43699192	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actgcggatgccaccatatcGgtcccgtatttcacattgat	8	12	1	1	rs367853186	alternate_allele	TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_002780	exon4	c.C943A	p.H315N	CATATCGGTCCCG		55	4	0.07	42	0	0				0	0					T	43699192	G	T	43699192	3	4	132	1	0	0	0	0	1	0	0	0	12705	1124	39	1	328	1	PSG4	19	43699192	Missense_Mutation	SNP	G	TCGA-YU-A90S-01A-11D-A435-10	33088748	43699192	15429791	39	9607											
PRR12	57479	mdanderson.org	37	chr19	50117808	50117808	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agctggcgttgcagacggggCgtgaacccccacccatctgg	14	14	1	2	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_020719	exon7	c.C4792T	p.R1598C	ACGGGGCGTGAAC		28	3	0.11	35	0	0				48	0	0				T	50117808	C	T	50117808	3	4	132	1	0	0	0	0	1	0	0	0	12635	768	27	1	4818	1	PRR12	19	50117808	Missense_Mutation	SNP	C	TCGA-YU-A90S-01A-11D-A435-10	6418616	50117808	9011175	40	9608											
MBOAT7	79143	broad.mit.edu	37	chr19	54682579	54682579	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcatgccatcgcgcacccGcacgcagaaatctgtgctgt	10	16	1	1	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	MBOAT7	NM_001146082	exon7	c.C934T	p.R312W	GCACCCGCACGCA		164	4	0.02	160	1	0.00625		37		99	0	0				A	54682579	G	A	54682579	3	1	132	1	0	0	0	0	1	0	0	0	9407	1086	38	1	496	1	MBOAT7	19	54682579	Missense_Mutation	SNP	G	TCGA-YU-A90S-01A-11D-A435-10	4564771	54682579	4446404	41	9609											
ZNF579	163033	mdanderson.org	37	chr19	56090220	56090220	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcttggggcgtggcgggggCcccccttccccttcctgttc	14	17	0	0	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_152600	exon2	c.G786C	p.G262G	CGGGGGCCCCCCT		112	19	0.17	91	4	0.043956044				12	0	0				G	56090220	C	G	56090220	2	3	132	1	0	0	0	0	0	0	0	1	18067	726	26	5		5	ZNF579	19	56090220	Silent	SNP	C	TCGA-YU-A90S-01A-11D-A435-10	1407641	56090220	3038763	42	9610											
BAGE	85319	broad.mit.edu	37	chr21	11071942	11071942	+	RNA	DEL	G	G	-													tggaatcttcacatacacctGggagtagtaacaaggctgtg					novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	.	.	.	.	ACACCTGGGAGTA		11	6	0.55	4	0	0				0	0					-	11071942	G	-	11071942	6	5	132	0	1	1	0	1	0	0	0	0	1289	1363	47	0		0	BAGE	21	11071942	RNA	DEL	G	TCGA-YU-A90S-01A-11D-A435-10		11071942	37057953	43	9611											
GATSL3	652968	mdanderson.org	37	chr22	30682339	30682339	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatggagctgggttcaggaCtgctagaggctgcctccttg	15	9	1	2	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_001037666	exon6	c.G656T	p.S219I	TCAGGACTGCTAG		48	3	0.06	53	0	0				41	0	0				A	30682339	C	A	30682339	3	1	132	1	0	0	0	0	1	0	0	0	6304	565	20	3	349	3	GATSL3	22	30682339	Missense_Mutation	SNP	C	TCGA-YU-A90S-01A-11D-A435-10		30682339	20622227	44	9612											
GATA1	2623	mdanderson.org	37	chrX	48651622	48651622	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagtgcaccaactgccagaCgaccaccacgacactgtggc	9	16	1	1	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_002049	exon5	c.C788T	p.T263M	GCCAGACGACCAC		55	3	0.05	41	0	0				0	0					T	48651622	C	T	48651622	3	4	132	1	0	0	0	0	1	0	0	0	6292	536	19	1	802	1	GATA1	23	48651622	Missense_Mutation	SNP	C	TCGA-YU-A90S-01A-11D-A435-10		48651622	106618938	45	9613											
TSPYL2	64061	broad.mit.edu	37	chrX	53112000	53112000	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catcgagtcggggtatggggAggcgcccccgcccacggaga	17	13	0	1	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	TSPYL2	NM_022117	exon1	c.A320G	p.E107G	ATGGGGAGGCGCC		120	5	0.04	110	0	0		53		22	0	0				G	53112000	A	G	53112000	3	3	132	1	0	0	0	0	1	0	0	0	16720	304	11	4	322	4	TSPYL2	23	53112000	Missense_Mutation	SNP	A	TCGA-YU-A90S-01A-11D-A435-10	4460378	53112000	102158560	46	9614											
CDX4	1046	broad.mit.edu	37	chrX	72667531	72667531	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caggcgccgccaaggccagtTcccccagcaggagccgccac	12	19	0	0	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	CDX4	NM_005193	exon1	c.T442C	p.S148P	GCCAGTTCCCCCA		29	5	0.17	21	2	0.0952380952		52		0	0					C	72667531	T	C	72667531	3	2	132	1	0	0	0	0	1	0	0	0	3206	1783	62	4	444	4	CDX4	23	72667531	Missense_Mutation	SNP	T	TCGA-YU-A90S-01A-11D-A435-10	19555531	72667531	82603029	47	9615											
EPB41	2035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	29314195	29314195	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagaggactttcacgactAttctcctcgtttctcaaaag	7	11	3	1	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	EPB41_ENST00000343067,NS,carcinoma,+2,1	EPB41_ENST00000343067	NM_203343	exon2	c.A246G	p.L82L	ACGACTATTCTCC		401	47	0.12	315	0	0		2	1	63	9	0.14				G	29314195	A	G	29314195	2	3	133	1	0	0	0	0	0	0	0	1	5179	436	16	4		4	EPB41	1	29314195	Silent	SNP	A	TCGA-YU-A90W-01A-11D-A435-10		29314195	219936426	1	9616											
TPR	7175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	186283154	186283154	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ctccctcccattgcatggctCacacctgtaaaagaaaaaag	6	13	1	1	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_003292	exon51	c.G7041A	p.V2347V	ATGGCTCACACCT		105	15	0.14	84	0	0				448	75	0.17				T	186283154	C	T	186283154	2	4	133	1	0	0	0	0	0	0	0	1	16476	813	29	3		3	TPR	1	186283154	Silent	SNP	C	TCGA-YU-A90W-01A-11D-A435-10	156968959	186283154	62967467	2	9617											
GPR39	2863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	133174783	133174783	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccaccattcgggtcacccaGgtgctgcagaagaaaggata	12	11	1	2	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_001508	exon1	c.G168A	p.Q56Q	CACCCAGGTGCTG		186	21	0.11	154	0	0				57	7	0.12				A	133174783	G	A	133174783	2	1	133	1	0	0	0	0	0	0	0	1	6732	991	35	3		3	GPR39	2	133174783	Silent	SNP	G	TCGA-YU-A90W-01A-11D-A435-10		133174783	110024590	3	9618											
BMPR2	659	ucsc.edu	37	chr2	203420129	203420129	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcacacctttgactatagggGaaaaaaaccgaaattcaatt	7	8	1	1	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	BMPR2	NM_001204	exon12	c.G1741A	p.E581K	ATAGGGGAAAAAA		163	3	0.02	142	1	0.0070422535		142		55	7	0.13	rescued with RNA-seq			A	203420129	G	A	203420129	3	1	133	1	0	0	0	0	1	0	0	0	1470	1175	41	3	1787	3	BMPR2	2	203420129	Missense_Mutation	SNP	G	TCGA-YU-A90W-01A-11D-A435-10	70245346	203420129	39779244	4	9619											
TTLL4	9654	broad.mit.edu	37	chr2	219612368	219612368	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcagcaagtttgacctgcgGatctatgtttatgtcacttc	10	9	2	1	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	TTLL4	NM_014640	exon11	c.G2298T	p.R766R	CCTGCGGATCTAT		253	5	0.02	209	0	0		96		156	0	0				T	219612368	G	T	219612368	2	4	133	1	0	0	0	0	0	0	0	1	16790	1161	41	3		3	TTLL4	2	219612368	Silent	SNP	G	TCGA-YU-A90W-01A-11D-A435-10	16192239	219612368	23587005	5	9620											
DCP1A	55802	mdanderson.org	37	chr3	53376192	53376192	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gcttgcatttctatacagaaGaaatggttcatggagctgaa	10	6	2	3	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	DCP1A,NS,carcinoma,0,1	DCP1A	NM_018403	exon3	c.C283A	p.L95I	ACAGAAGAAATGG		59	3	0.05	65	0	0		0	1	16	0	0				T	53376192	G	T	53376192	3	4	133	1	0	0	0	0	1	0	0	0	4321	942	33	3	1497	3	DCP1A	3	53376192	Missense_Mutation	SNP	G	TCGA-YU-A90W-01A-11D-A435-10		53376192	144646238	6	9621											
PARP14	54625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	122420415	122420415	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggaaaacatcatgggaaaAaggaagcctggtgtccccgg	14	8	1	0	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_017554	exon6	c.A3014G	p.K1005R	GGGAAAAAGGAAG		137	23	0.17	119	0	0				6	0	0				G	122420415	A	G	122420415	3	3	133	1	0	0	0	0	1	0	0	0	11504	14	1	4	3036	4	PARP14	3	122420415	Missense_Mutation	SNP	A	TCGA-YU-A90W-01A-11D-A435-10	69044223	122420415	75602015	7	9622											
FAM43A	131583	mdanderson.org	37	chr3	194407933	194407933	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atggtgcacgccgaggagcgCgcgctgcgccgcccgggcca	17	16	0	0	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_153690	exon1	c.C378A	p.R126R	GGAGCGCGCGCTG		26	2	0.08	22	0	0				11	0	0				A	194407933	C	A	194407933	2	1	133	1	0	0	0	0	0	0	0	1	5597	755	27	1		1	FAM43A	3	194407933	Silent	SNP	C	TCGA-YU-A90W-01A-11D-A435-10	71987518	194407933	3614497	8	9623											
PITX1	5307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	134364535	134364535	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aggccgccgtagccaaacgaCgagtgctgtttggacttgag	14	10	0	1	rs61751190	bycluster;alternate_allele	TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_002653	exon3	c.G879C	p.S293S	AAACGACGAGTGC		62	18	0.29	72	0	0				0	0					G	134364535	C	G	134364535	2	3	133	1	0	0	0	0	0	0	0	1	12001	523	19	5		5	PITX1	5	134364535	Silent	SNP	C	TCGA-YU-A90W-01A-11D-A435-10		134364535	46550725	9	9624											
PPP2R2B	5521	mdanderson.org	37	chr5	146070770	146070770	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccttctggcctcttatcaCgctcgctgactttccacagc	7	16	3	1	rs374783257		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	PPP2R2B_ENST00000508545,NS,carcinoma,0,8	PPP2R2B_ENST00000508545	NM_181675	exon5	c.G686A	p.R229H	TTATCACGCTCGC		44	3	0.07	63	0	0		0	8	0	0					T	146070770	C	T	146070770	3	4	133	1	0	0	0	0	1	0	0	0	12433	536	19	1	987	1	PPP2R2B	5	146070770	Missense_Mutation	SNP	C	TCGA-YU-A90W-01A-11D-A435-10	11706235	146070770	34844490	10	9625											
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	56368856	56368856	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccaattggagacattgaaGctaatttaccacctgcaata	6	9	0	2	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_015548	exon59	c.C11636T	p.A3879V	ATTGAAGCTAATT		124	14	0.11	129	0	0				72	10	0.14				A	56368856	G	A	56368856	3	1	133	1	0	0	0	0	1	0	0	0	4809	971	34	2	3983	2	DST	6	56368856	Missense_Mutation	SNP	G	TCGA-YU-A90W-01A-11D-A435-10		56368856	114746211	11	9626											
ETV1	2115	broad.mit.edu	37	chr7	13949310	13949310	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cataaaactgcctggggcccTtttcaaacatacagcctgtg	8	12	1	0	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	ETV1_ENST00000403527,NS,carcinoma,0,2	ETV1	NM_004956	exon11	c.A887G	p.K296R	GGGCCCTTTTCAA		151	4	0.03	129	0	0		138	2	47	0	0				C	13949310	T	C	13949310	3	2	133	1	0	0	0	0	1	0	0	0	5305	1609	56	4	562	4	ETV1	7	13949310	Missense_Mutation	SNP	T	TCGA-YU-A90W-01A-11D-A435-10		13949310	145189353	12	9627											
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	51096836	51096836	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cctctccccgtcagcacagcCatacactttgtctttcactt	4	17	4	0	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_015198	exon10	c.G1957T	p.G653C	CACAGCCATACAC		270	87	0.32	176	0	0				43	12	0.28				A	51096836	C	A	51096836	3	1	133	1	0	0	0	0	1	0	0	0	3676	594	21	3	1844	3	COBL	7	51096836	Missense_Mutation	SNP	C	TCGA-YU-A90W-01A-11D-A435-10	37147526	51096836	108041827	13	9628											
ZNF277	11179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	111980956	111980956	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctatcagcaagtgaaactgGtcaattttattcggaggcaa	9	7	3	1	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_021994	exon11	c.G1039A	p.V347I	AAACTGGTCAATT		233	54	0.23	228	0	0				61	21	0.34				A	111980956	G	A	111980956	3	1	133	1	0	0	0	0	1	0	0	0	17869	1261	44	3	1081	3	ZNF277	7	111980956	Missense_Mutation	SNP	G	TCGA-YU-A90W-01A-11D-A435-10	60884120	111980956	47157707	14	9629											
NOS3	4846	broad.mit.edu;mdanderson.org	37	chr7	150698654	150698654	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agacccctggaaggggagtgCcgccaagggcaccggcatca	15	13	1	1	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	NOS3	NM_001160111	exon11	c.C1451T	p.A484V	GGAGTGCCGCCAA		121	6	0.05	86	0	0		131		4	0	0				T	150698654	C	T	150698654	3	4	133	1	0	0	0	0	1	0	0	0	10590	739	26	2	1493	2	NOS3	7	150698654	Missense_Mutation	SNP	C	TCGA-YU-A90W-01A-11D-A435-10	38717698	150698654	8440009	15	9630											
ERICH1	157697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr8	642586	642586	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggcagtgtagagccgtcGggcagtcggggtctcagagc	18	10	1	2	rs150434775	bycluster	TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_207332	exon3	c.C196T	p.R66X	GCCGTCGGGCAGT		451	93	0.21	333	0	0	0			44	2	0.05				A	642586	G	A	642586	4	1	133	1	0	0	0	0	0	1	0	0	5258	1124	39	1	1151	1	ERICH1	8	642586	Nonsense_Mutation	SNP	G	TCGA-YU-A90W-01A-11D-A435-10		642586	145721436	16	9631											
FOXD4	2298	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr9	116901	116901	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aggggcggccagcgatgtcaGcccagagccctctgccaccg	14	16	2	1	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_207305	exon1	c.C1219G	p.L407V	ATGTCAGCCCAGA		181	14	0.08	180	0	0				0	0					C	116901	G	C	116901	3	2	133	1	0	0	0	0	1	0	0	0	6031	962	34	5	104	5	FOXD4	9	116901	Missense_Mutation	SNP	G	TCGA-YU-A90W-01A-11D-A435-10		116901	141096530	17	9632											
ABCA2	20	mdanderson.org	37	chr9	139917217	139917217	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actgagggcctccagatgctGgcgtagggcctcgagctctg	15	12	1	2	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_212533	exon5	c.C466A	p.Q156K	GATGCTGGCGTAG		36	3	0.08	29	0	0				4	0	0				T	139917217	G	T	139917217	3	4	133	1	0	0	0	0	1	0	0	0	32	1357	47	3	7114	3	ABCA2	9	139917217	Missense_Mutation	SNP	G	TCGA-YU-A90W-01A-11D-A435-10	139800316	139917217	1296214	18	9633											
NMT2	9397	broad.mit.edu;mdanderson.org	37	chr10	15210588	15210588	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaggctctgctggctggcCgcagactcgctgtcctccgc	12	17	1	1	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	NMT2	NM_004808	exon1	c.G24A	p.A8A	GCTGGCCGCAGAC		49	3	0.06	31	0	0		44		39	11	0.28				T	15210588	C	T	15210588	2	4	133	1	0	0	0	0	0	0	0	1	10550	639	23	1		1	NMT2	10	15210588	Silent	SNP	C	TCGA-YU-A90W-01A-11D-A435-10		15210588	120324159	19	9634											
C11orf35	256329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	557032	557032	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actccacggtcttgtgatgcCgctcggaatgctttccagag	11	12	1	2	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_173573	exon8	c.G779A	p.R260Q	TGATGCCGCTCGG		37	6	0.16	41	0	0				4	1	0.25				T	557032	C	T	557032	3	4	133	1	0	0	0	0	1	0	0	0	1643	652	23	1	1153	1	C11orf35	11	557032	Missense_Mutation	SNP	C	TCGA-YU-A90W-01A-11D-A435-10		557032	134449484	20	9635											
FAT3	120114	mdanderson.org	37	chr11	92257930	92257930	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tacattgaagttgaagatgtGaatgacaatgccccgctgac	10	8	0	6	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_001008781	exon2	c.G3423T	p.V1141V	AGATGTGAATGAC		56	3	0.05	130	0	0				0	0					T	92257930	G	T	92257930	2	4	133	1	0	0	0	0	0	0	0	1	5723	1277	45	3		3	FAT3	11	92257930	Silent	SNP	G	TCGA-YU-A90W-01A-11D-A435-10	91700898	92257930	42748586	21	9636											
CWF19L2	143884	broad.mit.edu;mdanderson.org	37	chr11	107309827	107309827	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tagaaatacctttagtaatcGatgacacactacagtcttca	5	9	2	2	rs141170726	alternate_allele	TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	CWF19L2_ENST00000282251,NS,carcinoma,+1,2	CWF19L2	NM_152434	exon6	c.C653A	p.S218X	GTAATCGATGACA		40	3	0.08	80	1	0.0125		135	2	6	0	0				T	107309827	G	T	107309827	4	4	133	1	0	0	0	0	0	1	0	0	4095	1059	37	1	2083	1	CWF19L2	11	107309827	Nonsense_Mutation	SNP	G	TCGA-YU-A90W-01A-11D-A435-10	15051897	107309827	27696689	22	9637											
DSCAML1	57453	mdanderson.org	37	chr11	117651489	117651489	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgctgcaaggagtcatttAcaaagtagaggctggtgcca	12	9	1	1	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_020693	exon2	c.T263C	p.V88A	TCATTTACAAAGT		8	1	0.13	16	0	0				1	0	0				G	117651489	A	G	117651489	3	3	133	1	0	0	0	0	1	0	0	0	4795	391	14	4	6206	4	DSCAML1	11	117651489	Missense_Mutation	SNP	A	TCGA-YU-A90W-01A-11D-A435-10	10341662	117651489	17355027	23	9638											
OR10S1	219873	mdanderson.org	37	chr11	123848041	123848041	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcactcagtgctggccagaaAgtggaagcaataaagctgta	12	8	1	1	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_001004474	exon1	c.T358A	p.F120I	CCAGAAAGTGGAA		53	3	0.06	91	0	0				0	0					T	123848041	A	T	123848041	3	4	133	1	0	0	0	0	1	0	0	0	10965	72	3	5	641	5	OR10S1	11	123848041	Missense_Mutation	SNP	A	TCGA-YU-A90W-01A-11D-A435-10	6196552	123848041	11158475	24	9639											
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	2908333	2908333	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	attggcgagggggagaacctGgatctgccttatggtctgga	16	7	2	1	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_002014	exon5	c.G594C	p.L198L	GAACCTGGATCTG		109	19	0.17	52	0	0				2602	473	0.18				C	2908333	G	C	2908333	2	2	133	1	0	0	0	0	0	0	0	1	5942	1335	47	5		5	FKBP4	12	2908333	Silent	SNP	G	TCGA-YU-A90W-01A-11D-A435-10		2908333	130943562	25	9640											
NCOR2	9612	mdanderson.org	37	chr12	124887102	124887102	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgttgttgCtgctgctgtcagaccccggg	14	12	1	1	rs7488825	bycluster;alternate_allele	TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_006312	exon16	c.G1488A	p.Q496Q	TTGTTGCTGCTGC		56	5	0.09	55	0	0				26	0	0				T	124887102	C	T	124887102	2	4	133	1	0	0	0	0	0	0	0	1	10282	796	28	2		2	NCOR2	12	124887102	Silent	SNP	C	TCGA-YU-A90W-01A-11D-A435-10	121978769	124887102	8964793	26	9641											
USP12	219333	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	27664080	27664081	+	Frame_Shift_Del	DEL	AG	AG	-													aatacttgtattcactgcacAgagtttctgtgttgctgaaa					novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	AG	AG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	USP12	NM_182488	exon6	c.674_675del	p.225_225del	CTGCACAGAGTTT		225	40	0.18	263	0	0		35		34	0	0				-	27664081	AG	-	27664080	7	5	133	1	0	1	0	1	0	0	0	0	17102	188	7	0	454	0	USP12	13	27664080	Frame_Shift_Del	DEL	AG	TCGA-YU-A90W-01A-11D-A435-10		27664080	87505798	27	9642											
LTB4R2	56413	mdanderson.org	37	chr14	24780613	24780613	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcagtcaaccttctgcaggCggtcgcagcgctggctccac	12	16	2	0	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_019839	exon2	c.C743T	p.A248V	TGCAGGCGGTCGC		23	2	0.09	18	0	0				13	0	0				T	24780613	C	T	24780613	3	4	133	1	0	0	0	0	1	0	0	0	9116	768	27	1	745	1	LTB4R2	14	24780613	Missense_Mutation	SNP	C	TCGA-YU-A90W-01A-11D-A435-10		24780613	82568927	28	9643											
BCL11B	64919	mdanderson.org	37	chr14	99641140	99641140	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggcgctgttgagcccggggCtgggcagcggcgcgggcttg	21	12	0	1	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_138576	exon4	c.G2033A	p.S678N	CCGGGGCTGGGCA		20	2	0.1	25	0	0				1	0	0				T	99641140	C	T	99641140	3	4	133	1	0	0	0	0	1	0	0	0	1362	797	28	2	655	2	BCL11B	14	99641140	Missense_Mutation	SNP	C	TCGA-YU-A90W-01A-11D-A435-10	74860527	99641140	7708400	29	9644											
ATP2A1	487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	28914470	28914470	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctatgttgaccccctgccggTgaggtttcttccgcccaggg	12	14	1	2	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_173201	exon20	c.2862+2T>A	.	TGCCGGTGAGGTT		51	13	0.25	46	0	0				5	5	1				A	28914470	T	A	28914470	5	1	133	1	0	0	0	0	0	0	1	0	1135	1710	59	5	2942	5	ATP2A1	16	28914470	Splice_Site	SNP	T	TCGA-YU-A90W-01A-11D-A435-10		28914470	61440283	30	9645											
ZNF668	79759	mdanderson.org	37	chr16	31075770	31075770	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaccgggcctctgcagccTccacttccatggccttggtg	13	15	1	0	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_001172669	exon3	c.A80G	p.E27G	GCAGCCTCCACTT		25	2	0.08	32	0	0				29	0	0				C	31075770	T	C	31075770	3	2	133	1	0	0	0	0	1	0	0	0	18131	1551	54	4	1856	4	ZNF668	16	31075770	Missense_Mutation	SNP	T	TCGA-YU-A90W-01A-11D-A435-10	2161300	31075770	59278983	31	9646											
LDHD	197257	mdanderson.org	37	chr16	75148547	75148547	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtccccgacgccccggtgGccgccatgccacagagagag	14	16	0	2	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_194436	exon5	c.C506T	p.A169V	CCGGTGGCCGCCA		23	2	0.09	12	0	0				3	0	0				A	75148547	G	A	75148547	3	1	133	1	0	0	0	0	1	0	0	0	8741	1203	42	2	1045	2	LDHD	16	75148547	Missense_Mutation	SNP	G	TCGA-YU-A90W-01A-11D-A435-10	44072777	75148547	15206206	32	9647											
PRDM7	11105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	90124710	90124710	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cttttattcaagagtttggaCctttctttgatctcttgacc	6	9	3	3	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	PRDM7_ENST00000449207,NS,carcinoma,0,1	PRDM7_ENST00000449207	NM_001098173	exon10	c.G1466C	p.G489A	TTTGGACCTTTCT		97	32	0.33	96	0	0		0	1	2	2	1				G	90124710	C	G	90124710	3	3	133	1	0	0	0	0	1	0	0	0	12512	507	18	5	16	5	PRDM7	16	90124710	Missense_Mutation	SNP	C	TCGA-YU-A90W-01A-11D-A435-10	14976163	90124710	230043	33	9648											
RABEP1	9135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	5212059	5212059	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacgtgcacaacagcagctTgaacaagaatttaatcaaaa	6	8	1	2	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_004703	exon2	c.T105C	p.L35L	GCAGCTTGAACAA		382	56	0.15	430	0	0				45	12	0.27				C	5212059	T	C	5212059	2	2	133	1	0	0	0	0	0	0	0	1	13012	1799	63	4		4	RABEP1	17	5212059	Silent	SNP	T	TCGA-YU-A90W-01A-11D-A435-10		5212059	75983151	34	9649											
GPS2	2874	mdanderson.org	37	chr17	7217005	7217005	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtccatgctctggtgtcccTgcaaaagcagctgctgagcc	11	13	1	1	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_004489	exon7	c.A516T	p.A172A	TGTCCCTGCAAAA		51	4	0.08	89	0	0				208	0	0				A	7217005	T	A	7217005	2	1	133	1	0	0	0	0	0	0	0	1	6773	1567	55	5		5	GPS2	17	7217005	Silent	SNP	T	TCGA-YU-A90W-01A-11D-A435-10	2004946	7217005	73978205	35	9650											
SPAG5	10615	mdanderson.org	37	chr17	26912638	26912638	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggctgatgcgctggctggCgtgtgcacagaaagcctcca	14	12	0	2	rs146987463		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_006461	exon8	c.G1774A	p.A592T	GGCTGGCGTGTGC		52	3	0.06	58	0	0	0			137	0	0				T	26912638	C	T	26912638	3	4	133	1	0	0	0	0	1	0	0	0	15036	768	27	1	1875	1	SPAG5	17	26912638	Missense_Mutation	SNP	C	TCGA-YU-A90W-01A-11D-A435-10	19695633	26912638	54282572	36	9651											
TBC1D29	26083	hgsc.bcm.edu	37	chr17	28890347	28890347	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctccaagggtgccaggacaAcaagccttgagccggggaga	14	12	0	2	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_015594	exon5	c.A357G	p.Q119Q	AGGACAACAAGCC		95	4	0.04	156	0	0				5	0	0				G	28890347	A	G	28890347	2	3	133	1	0	0	0	0	0	0	0	1	15674	40	2	4		4	TBC1D29	17	28890347	Silent	SNP	A	TCGA-YU-A90W-01A-11D-A435-10	1977709	28890347	52304863	37	9652											
CDK12	51755	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	37627847	37627850	+	Frame_Shift_Del	DEL	ACTC	ACTC	-													cttcaactttgcccccttctActcactcaaagacatctgct					novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	ACTC	ACTC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	CDK12	NM_016507	exon2	c.1761_1764del	p.587_588del	CCTTCTACTCACT		273	85	0.31	242	0	0		161		44	0	0				-	37627850	ACTC	-	37627847	7	5	133	1	0	1	0	1	0	0	0	0	3150	391	14	0	1768	0	CDK12	17	37627847	Frame_Shift_Del	DEL	ACTC	TCGA-YU-A90W-01A-11D-A435-10	8737500	37627847	43567363	38	9653											
KRT19	3880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	39680453	39680453	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagggtgcgccgcaggtcaGtaacctcggacctgctcatc	13	13	2	0	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_002276	exon5	c.C890T	p.T297I	AGGTCAGTAACCT		113	30	0.27	140	0	0				9	4	0.44				A	39680453	G	A	39680453	3	1	133	1	0	0	0	0	1	0	0	0	8498	1029	36	3	320	3	KRT19	17	39680453	Missense_Mutation	SNP	G	TCGA-YU-A90W-01A-11D-A435-10	2052606	39680453	41514757	39	9654											
KRT9	3857	broad.mit.edu	37	chr17	39728194	39728194	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcccaggccgcccccgccAcccccgccgctgcggctcaa	10	24	1	0	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	KRT9	NM_000226	exon1	c.T51G	p.G17G	CCCGCCACCCCCG		42	17	0.4	40	13	0.325		78		0	0					C	39728194	A	C	39728194	2	2	133	1	0	0	0	0	0	0	0	1	8543	146	6	4		4	KRT9	17	39728194	Silent	SNP	A	TCGA-YU-A90W-01A-11D-A435-10	47741	39728194	41467016	40	9655											
NAGLU	4669	mdanderson.org	37	chr17	40696174	40696174	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaagcagaggtaccccaGccagccgcgaggagacactg	13	14	0	2	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_000263	exon6	c.G2150T	p.S717I	ACCCCAGCCAGCC		49	3	0.06	38	0	0				73	0	0				T	40696174	G	T	40696174	3	4	133	1	0	0	0	0	1	0	0	0	10190	971	34	2	2172	2	NAGLU	17	40696174	Missense_Mutation	SNP	G	TCGA-YU-A90W-01A-11D-A435-10	967980	40696174	40499036	41	9656											
ERN1	2081	mdanderson.org	37	chr17	62144207	62144207	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggccaccacaggggaggcGtagttttggatccacaggac	14	10	0	0	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_001433	exon8	c.C666A	p.Y222X	GGAGGCGTAGTTT		132	5	0.04	122	0	0				4	0	0				T	62144207	G	T	62144207	4	4	133	1	0	0	0	0	0	1	0	0	5265	1140	40	1	2327	1	ERN1	17	62144207	Nonsense_Mutation	SNP	G	TCGA-YU-A90W-01A-11D-A435-10	21448033	62144207	19051003	42	9657											
SLC26A11	284129	mdanderson.org	37	chr17	78195433	78195433	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccccgagcgcctgctgctGctcccctgcggccctgcaga	13	19	0	1	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_173626	exon3	c.G74T	p.C25F	GCTGCTGCTCCCC		29	4	0.14	24	0	0				37	0	0				T	78195433	G	T	78195433	3	4	133	1	0	0	0	0	1	0	0	0	14570	1319	46	2	76	2	SLC26A11	17	78195433	Missense_Mutation	SNP	G	TCGA-YU-A90W-01A-11D-A435-10	16051226	78195433	2999777	43	9658											
TXNDC2	84203	mdanderson.org	37	chr18	9887407	9887407	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aggaagccatccagcccaagGagggtgacatccccaagtcc	11	14	0	1	rs148775952		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_001098529	exon2	c.G931A	p.E311K	CCCAAGGAGGGTG		113	6	0.05	99	1	0.0101010101				0	0					A	9887407	G	A	9887407	3	1	133	1	0	0	0	0	1	0	0	0	16858	1175	41	3	937	3	TXNDC2	18	9887407	Missense_Mutation	SNP	G	TCGA-YU-A90W-01A-11D-A435-10		9887407	68189841	44	9659											
MUM1	84939	mdanderson.org	37	chr19	1360218	1360218	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tggctctggacgttctgagcGagggctcgatttggagtcaa	15	8	3	1	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_032853	exon5	c.G301T	p.E101X	CTGAGCGAGGGCT		104	5	0.05	78	0	0				176	0	0				T	1360218	G	T	1360218	4	4	133	1	0	0	0	0	0	1	0	0	10032	1059	37	1	315	1	MUM1	19	1360218	Nonsense_Mutation	SNP	G	TCGA-YU-A90W-01A-11D-A435-10		1360218	57768765	45	9660											
APBA3	9546	mdanderson.org	37	chr19	3751225	3751225	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcagctcgatgatgcgggCgtgtggcgtggccaccacac	16	12	0	1	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_004886	exon10	c.G1618A	p.A540T	TGCGGGCGTGTGG		41	3	0.07	25	0	0				60	0	0				T	3751225	C	T	3751225	3	4	133	1	0	0	0	0	1	0	0	0	754	768	27	1	117	1	APBA3	19	3751225	Missense_Mutation	SNP	C	TCGA-YU-A90W-01A-11D-A435-10	2391007	3751225	55377758	46	9661											
DNM2	1785	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	10940946	10940946	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgcccccaatcccatcccGgcctggaccccagagcgtgt	11	19	0	1	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_001005361	exon20	c.G2435T	p.R812L	CATCCCGGCCTGG		177	20	0.11	96	0	0				319	52	0.16				T	10940946	G	T	10940946	3	4	133	1	0	0	0	0	1	0	0	0	4699	1116	39	1	2656	1	DNM2	19	10940946	Missense_Mutation	SNP	G	TCGA-YU-A90W-01A-11D-A435-10	7189721	10940946	48188037	47	9662											
ZNF85	7639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	21132152	21132152	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	caactcttactacccataagAtaattcatactggagagaaa	5	9	2	2	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_001256171	exon5	c.A922T	p.I308L	CATAAGATAATTC		99	14	0.14	69	0	0				40	21	0.53				T	21132152	A	T	21132152	3	4	133	1	0	0	0	0	1	0	0	0	18236	333	12	5	846	5	ZNF85	19	21132152	Missense_Mutation	SNP	A	TCGA-YU-A90W-01A-11D-A435-10	10191206	21132152	37996831	48	9663											
RHPN2	85415	mdanderson.org	37	chr19	33535186	33535186	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccgctccggtcctcatccGcacggctttcaggatctgct	9	16	3	0	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_033103	exon2	c.C154T	p.R52W	TCATCCGCACGGC		146	5	0.03	106	0	0				23	0	0				A	33535186	G	A	33535186	3	1	133	1	0	0	0	0	1	0	0	0	13400	1086	38	1	1962	1	RHPN2	19	33535186	Missense_Mutation	SNP	G	TCGA-YU-A90W-01A-11D-A435-10	12403034	33535186	25593797	49	9664											
FFAR1	2864	mdanderson.org	37	chr19	35843316	35843316	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtcctggcctgaagacaGtgtgtgcggcaagaacgcaa	16	9	0	3	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_005303	exon1	c.G862T	p.V288L	AAGACAGTGTGTG		36	3	0.08	31	0	0				0	0					T	35843316	G	T	35843316	3	4	133	1	0	0	0	0	1	0	0	0	5859	1029	36	3	864	3	FFAR1	19	35843316	Missense_Mutation	SNP	G	TCGA-YU-A90W-01A-11D-A435-10	2308130	35843316	23285667	50	9665											
SIRT2	22933	broad.mit.edu	37	chr19	39369886	39369886	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaagtgctggggttggggAcccccgcccccgactgggca	16	14	0	1	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	SIRT2	NM_012237	exon16	c.T1079G	p.V360G	TTGGGGACCCCCG		69	11	0.16	42	4	0.0952380952		29		56	1	0.02				C	39369886	A	C	39369886	3	2	133	1	0	0	0	0	1	0	0	0	14392	275	10	4	94	4	SIRT2	19	39369886	Missense_Mutation	SNP	A	TCGA-YU-A90W-01A-11D-A435-10	3526570	39369886	19759097	51	9666											
KLK11	11012	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	51526395	51526395	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgctggcacacaccatggTgtctgtgatgttgccggggt	14	11	1	1	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	KLK11	NM_144947	exon5	c.A649G	p.T217A	CCATGGTGTCTGT		147	14	0.1	83	1	0.0120481928		28		0	0					C	51526395	T	C	51526395	3	2	133	1	0	0	0	0	1	0	0	0	8441	1696	59	4	207	4	KLK11	19	51526395	Missense_Mutation	SNP	T	TCGA-YU-A90W-01A-11D-A435-10	12156509	51526395	7602588	52	9667											
SNPH	9751	mdanderson.org	37	chr20	1285979	1285979	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	atgacacactgagccggacgGacgcgctggaagccagcagc	14	13	0	2	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_014723	exon6	c.G766T	p.D256Y	CGGACGGACGCGC		38	3	0.08	40	0	0				27	0	0				T	1285979	G	T	1285979	3	4	133	1	0	0	0	0	1	0	0	0	14903	1174	41	3	780	3	SNPH	20	1285979	Missense_Mutation	SNP	G	TCGA-YU-A90W-01A-11D-A435-10		1285979	61739541	53	9668											
NCOA6	23054	hgsc.bcm.edu	37	chr20	33345720	33345721	+	In_Frame_Ins	INS	-	-	TGC													gttgctgctgttgctgttgtINStgctgctgctgctgctgctg					novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	NCOA6	NM_014071	exon7	c.831_832insGCA	p.Q277delinsQQ	CTGTTGTTGCTGC		99	11	0.11	58	0	0		219		23	0	0				TGC	33345721	-	TGC	33345720	7	5	133	1	0	1	1	0	0	0	0	0	10279	1722	60	0	5396	0	NCOA6	20	33345720	In_Frame_Ins	INS	-	TCGA-YU-A90W-01A-11D-A435-10	32059741	33345720	29679800	54	9669											
ARVCF	421	broad.mit.edu	37	chr22	19964943	19964943	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccgccccacccacctttgGccttcttgcctccaaagcag	7	19	1	0	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	ARVCF	NM_001670	exon9	c.C1865A	p.A622D	CCTTTGGCCTTCT		237	5	0.02	167	0	0		54		45	0	0				T	19964943	G	T	19964943	3	4	133	1	0	0	0	0	1	0	0	0	1002	1203	42	2	1067	2	ARVCF	22	19964943	Missense_Mutation	SNP	G	TCGA-YU-A90W-01A-11D-A435-10		19964943	31339623	55	9670											
SEZ6L	23544	broad.mit.edu	37	chr22	26688869	26688869	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcggtccctacaacacccGcacccctgcaaatctccccc	6	21	1	0	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	SEZ6L	NM_001184777	exon2	c.G592T	p.A198S	ACACCCGCACCCC		210	4	0.02	178	0	0		174		3	0	0				T	26688869	G	T	26688869	3	4	133	1	0	0	0	0	1	0	0	0	14196	1087	38	1	598	1	SEZ6L	22	26688869	Missense_Mutation	SNP	G	TCGA-YU-A90W-01A-11D-A435-10	6723926	26688869	24615697	56	9671											
APOBEC3A	200315	hgsc.bcm.edu	37	chr22	39357586	39357586	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aacacacacgtgagactgcgTatcttcgctgcccgcatcta	8	14	2	1	rs202076860	bycluster	TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	APOBEC3A,caecum,carcinoma,+1,1	APOBEC3A	NM_145699	exon3	c.T369C	p.R123R	ACTGCGTATCTTC		54	6	0.11	78	1	0.0128205128	0.001	1	1	2	0	0				C	39357586	T	C	39357586	2	2	133	1	0	0	0	0	0	0	0	1	786	1625	57	4		4	APOBEC3A	22	39357586	Silent	SNP	T	TCGA-YU-A90W-01A-11D-A435-10	12668717	39357586	11946980	57	9672											
CHRDL1	91851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	109924730	109924730	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctttcgaatagtccaaacgTggacctctacctgaggtggt	10	11	1	1	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_001143981	exon10	c.A1136G	p.H379R	CAAACGTGGACCT		164	79	0.48	154	0	0				11	6	0.55				C	109924730	T	C	109924730	3	2	133	1	0	0	0	0	1	0	0	0	3395	1696	59	4	252	4	CHRDL1	23	109924730	Missense_Mutation	SNP	T	TCGA-YU-A90W-01A-11D-A435-10		109924730	45345830	58	9673											
ARHGAP36	158763	mdanderson.org	37	chrX	130219013	130219013	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctgctgccagatgatctGtacatgtcattcctcctgac	7	13	3	3	novel		TCGA-YU-A90W-01A-11D-A435-10	TCGA-YU-A90W-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e283c8-569b-4e2a-81ec-1d38873ec4f8	1374f899-bff2-4251-a5f5-309ce22bb20f	.	.	NM_144967	exon7	c.G930T	p.L310L	TGATCTGTACATG		56	3	0.05	56	1	0.0178571429				6	0	0				T	130219013	G	T	130219013	2	4	133	1	0	0	0	0	0	0	0	1	880	1364	48	3		3	ARHGAP36	23	130219013	Silent	SNP	G	TCGA-YU-A90W-01A-11D-A435-10	20294283	130219013	25051547	59	9674											
DAB1	1600	mdanderson.org	37	chr1	57480875	57480875	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttggaacatggcagctggCaaaggcataacagtttgtgt	12	8	0	0	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_021080	exon14	c.G1125A	p.L375L	AGCTGGCAAAGGC		49	3	0.06	78	0	0				1	0	0				T	57480875	C	T	57480875	2	4	134	1	0	0	0	0	0	0	0	1	4241	709	25	2		2	DAB1	1	57480875	Silent	SNP	C	TCGA-YU-A90Y-01A-11D-A435-10		57480875	191769746	1	9675											
RNPC3	55599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	104068861	104068861	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggggctcagtctgtgcggGtcctgtcagataaggggcga	17	9	3	1	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_017619	exon1	c.G169A	p.V57I	GTGCGGGTCCTGT		117	17	0.15	162	0	0				6	1	0.17				A	104068861	G	A	104068861	3	1	134	1	0	0	0	0	1	0	0	0	13559	1261	44	3	171	3	RNPC3	1	104068861	Missense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10	46587986	104068861	145181760	2	9676											
NHLH2	4808	broad.mit.edu	37	chr1	116383281	116383281	+	Translation_Start_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaagataagattccgctcCtatcgtatgcctttcttttc	6	10	1	2	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	NHLH2	.	.	.	.	CCGCTCCTATCGT		88	4	0.05	80	1	0.0125		8		0	0					A	116383281	C	A	116383281	1	1	134	1	0	0	0	0	0	0	0	0	10450	696	24	3		3	NHLH2	1	116383281	Translation_Start_Site	SNP	C	TCGA-YU-A90Y-01A-11D-A435-10	12314420	116383281	132867340	3	9677											
ZNF697	90874	broad.mit.edu;mdanderson.org	37	chr1	120165996	120165996	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	cgagctgaggctgaaggcctCgccgcactcggggcacgggt	17	13	0	2	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	ZNF697	NM_001080470	exon3	c.G970C	p.E324Q	AGGCCTCGCCGCA		17	3	0.18	8	0	0		26		2	0	0				G	120165996	C	G	120165996	3	3	134	1	0	0	0	0	1	0	0	0	18155	893	31	5	671	5	ZNF697	1	120165996	Missense_Mutation	SNP	C	TCGA-YU-A90Y-01A-11D-A435-10	3782715	120165996	129084625	4	9678											
NUDT17	200035	hgsc.bcm.edu	37	chr1	145589328	145589328	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagtgaatgggccacgtccCgagccctggtccggctccca	13	16	0	1	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	NUDT17,NS,carcinoma,+2,1	NUDT17	NM_001012758	exon1	c.G100A	p.G34R	ACGTCCCGAGCCC		73	4	0.05	80	0	0		2	1	2	0	0				T	145589328	C	T	145589328	3	4	134	1	0	0	0	0	1	0	0	0	10781	652	23	1	918	1	NUDT17	1	145589328	Missense_Mutation	SNP	C	TCGA-YU-A90Y-01A-11D-A435-10	25423332	145589328	103661293	5	9679											
CCNT2	905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	135694499	135694499	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tatcaaagtagcacatgcttGtcttcatcctctagagccac	6	12	4	1	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_058241	exon3	c.G329C	p.C110S	ATGCTTGTCTTCA		112	10	0.09	90	0	0				26	7	0.27				C	135694499	G	C	135694499	3	2	134	1	0	0	0	0	1	0	0	0	2957	1377	48	5	339	5	CCNT2	2	135694499	Missense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10		135694499	107504874	6	9680											
LCT	3938	broad.mit.edu	37	chr2	136575423	136575423	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaccctcggcccagcctcCttccacgttaaaggctcctg	7	20	0	0	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	LCT	NM_002299	exon6	c.G1195A	p.G399R	AGCCTCCTTCCAC		72	3	0.04	72	0	0		309		0	0					T	136575423	C	T	136575423	3	4	134	1	0	0	0	0	1	0	0	0	8731	690	24	3	4636	3	LCT	2	136575423	Missense_Mutation	SNP	C	TCGA-YU-A90Y-01A-11D-A435-10	880924	136575423	106623950	7	9681											
NT5DC2	64943	mdanderson.org	37	chr3	52558490	52558490	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacaataaaggtgccctcagCggatgtgggccatgtcacca	12	11	2	0	rs200568224		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	NT5DC2,NS,carcinoma,-1,1	NT5DC2	NM_001134231	exon14	c.G1670A	p.R557H	CCTCAGCGGATGT		32	3	0.09	70	0	0		-1	1	430	0	0				T	52558490	C	T	52558490	3	4	134	1	0	0	0	0	1	0	0	0	10738	768	27	1	7	1	NT5DC2	3	52558490	Missense_Mutation	SNP	C	TCGA-YU-A90Y-01A-11D-A435-10		52558490	145463940	8	9682											
ADCY5	111	mdanderson.org	37	chr3	123071367	123071367	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctctgggagacctcagccGgatagtgggtgcagacaccc	14	12	2	2	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_183357	exon2	c.C1196A	p.P399Q	TCAGCCGGATAGT		44	3	0.07	42	0	0				3	0	0				T	123071367	G	T	123071367	3	4	134	1	0	0	0	0	1	0	0	0	296	1116	39	1	2669	1	ADCY5	3	123071367	Missense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10	70512877	123071367	74951063	9	9683											
CPN2	1370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	194062671	194062671	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agatggagagcggcaggtgcGtgatggcgttgcgttgcagc	19	7	0	3	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	CPN2,NS,carcinoma,0,1	CPN2	NM_001080513	exon2	c.C761A	p.T254K	AGGTGCGTGATGG		158	18	0.11	126	0	0		0	1	3	0	0				T	194062671	G	T	194062671	3	4	134	1	0	0	0	0	1	0	0	0	3833	1145	40	1	880	1	CPN2	3	194062671	Missense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10	70991304	194062671	3959759	10	9684											
DOK7	285489	mdanderson.org	37	chr4	3494873	3494873	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccgagcccagcctgtgcaCctgcctgcccgggacagtcg	12	19	0	0	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_173660	exon7	c.C1160A	p.T387N	TGTGCACCTGCCT		33	3	0.09	39	0	0				1	0	0				A	3494873	C	A	3494873	3	1	134	1	0	0	0	0	1	0	0	0	4729	507	18	3	1186	3	DOK7	4	3494873	Missense_Mutation	SNP	C	TCGA-YU-A90Y-01A-11D-A435-10		3494873	187659403	11	9685											
BRD8	10902	mdanderson.org	37	chr5	137513290	137513290	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cgccacttctcatgacagaaGatgctaaacatagcttctct	6	12	2	3	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_139199	exon2	c.C86A	p.S29Y	ACAGAAGATGCTA		53	3	0.06	56	0	0				68	0	0				T	137513290	G	T	137513290	3	4	134	1	0	0	0	0	1	0	0	0	1508	942	33	3	4012	3	BRD8	5	137513290	Missense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10		137513290	43401970	12	9686											
TNXB	7148	hgsc.bcm.edu	37	chr6	32024600	32024600	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcaggggtggcatctgtcaTggtcagctcccccaggcgag	15	12	4	0	rs369180703		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	TNXB_ENST00000375247,NS,carcinoma,0,2	TNXB_ENST00000375247	NM_019105	exon23	c.A7906G	p.M2636V	CTGTCATGGTCAG		120	5	0.04	133	2	0.015037594		0	2	22	0	0				C	32024600	T	C	32024600	3	2	134	1	0	0	0	0	1	0	0	0	16405	1464	51	4	6895	4	TNXB	6	32024600	Missense_Mutation	SNP	T	TCGA-YU-A90Y-01A-11D-A435-10		32024600	139090467	13	9687											
ETV7	51513	mdanderson.org	37	chr6	36343801	36343801	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctccctgctccacagtgCgggctggatgcctgcaacca	11	16	0	0	rs145194281	bycluster;by1000genomes	TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	ETV7,caecum,carcinoma,0,1	ETV7	NM_016135	exon3	c.G154A	p.A52T	ACAGTGCGGGCTG		19	2	0.11	15	0	0		0	1	4	0	0				T	36343801	C	T	36343801	3	4	134	1	0	0	0	0	1	0	0	0	5312	768	27	1	895	1	ETV7	6	36343801	Missense_Mutation	SNP	C	TCGA-YU-A90Y-01A-11D-A435-10	4319201	36343801	134771266	14	9688											
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	111714087	111714087	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acattaactaaccttggtatTtcatcttgttcccaccgaaa	4	11	2	0	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_002912	exon5	c.A654G	p.E218E	TGGTATTTCATCT		140	38	0.27	174	0	0				1	0	0				C	111714087	T	C	111714087	2	2	134	1	0	0	0	0	0	0	0	1	13291	1838	64	4		4	REV3L	6	111714087	Silent	SNP	T	TCGA-YU-A90Y-01A-11D-A435-10	75370286	111714087	59400980	15	9689											
TXLNB	167838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	139569008	139569008	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgttgcttttagttagtgtGctctggaattcttcaaacct	8	8	3	0	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_153235	exon8	c.C1116T	p.S372S	TAGTGTGCTCTGG		143	31	0.22	197	0	0				0	0					A	139569008	G	A	139569008	2	1	134	1	0	0	0	0	0	0	0	1	16849	1310	46	2		2	TXLNB	6	139569008	Silent	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10	27854921	139569008	31546059	16	9690											
UTRN	7402	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	144780096	144780096	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtgggtaaaacacacttcCatttctgaatcttcccggca	8	11	2	1	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	UTRN	NM_007124	exon19	c.C2475T	p.S825S	CACTTCCATTTCT		114	34	0.3	133	2	0.015037594		327		3	0	0				T	144780096	C	T	144780096	2	4	134	1	0	0	0	0	0	0	0	1	17162	581	21	3		3	UTRN	6	144780096	Silent	SNP	C	TCGA-YU-A90Y-01A-11D-A435-10	5211088	144780096	26334971	17	9691											
SYNE1	23345	broad.mit.edu;mdanderson.org	37	chr6	152631005	152631005	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctggatggcggtgtgctGcagccggctggcctcttcct	15	13	1	0	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	SYNE1	NM_182961	exon90	c.C17167T	p.Q5723X	TGTGCTGCAGCCG		46	4	0.09	49	0	0		3227		3	0	0				A	152631005	G	A	152631005	4	1	134	1	0	0	0	0	0	1	0	0	15501	1328	46	2	9527	2	SYNE1	6	152631005	Nonsense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10	7850909	152631005	18484062	18	9692											
GRB10	2887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	50671755	50671755	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cctccctggagatcctcccgTgaaaccagtgctgtgtcctg	10	15	0	2	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_005311	exon14	c.A1484T	p.H495L	CTCCCGTGAAACC		77	8	0.1	85	0	0				55	15	0.27				A	50671755	T	A	50671755	3	1	134	1	0	0	0	0	1	0	0	0	6796	1696	59	5	312	5	GRB10	7	50671755	Missense_Mutation	SNP	T	TCGA-YU-A90Y-01A-11D-A435-10		50671755	108466908	19	9693											
PSIP1	11168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	15472670	15472672	+	In_Frame_Del	DEL	CTG	CTG	-													ctcttgcttgcgttttcgatCtgctgcttctttctcatgtt					novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	CTG	CTG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	PSIP1	NM_001128217	exon10	c.936_938del	p.312_313del	TTCGATCTGCTGC		201	43	0.21	170	0	0		93		403	0	0				-	15472672	CTG	-	15472670	7	5	134	1	0	1	0	1	0	0	0	0	12711	913	32	0	712	0	PSIP1	9	15472670	In_Frame_Del	DEL	CTG	TCGA-YU-A90Y-01A-11D-A435-10		15472670	125740761	20	9694											
AQP7	364	mdanderson.org	37	chr9	33385287	33385287	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaccaccagttctccccatTgctgcaggcaagaggcagag	10	15	1	2	rs74557595	bycluster	TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_001170	exon8	c.A745G	p.N249D	CCCCATTGCTGCA		15	2	0.13	13	0	0				2	0	0				C	33385287	T	C	33385287	3	2	134	1	0	0	0	0	1	0	0	0	828	1826	63	4	287	4	AQP7	9	33385287	Missense_Mutation	SNP	T	TCGA-YU-A90Y-01A-11D-A435-10	17912617	33385287	107828144	21	9695											
OR13A1	79290	mdanderson.org	37	chr10	45799291	45799291	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agggacctcgcagaagaaatGgataatgacattggggccac	13	8	0	3	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_001004297	exon4	c.C580A	p.H194N	AGAAATGGATAAT		20	2	0.1	41	0	0				0	0					T	45799291	G	T	45799291	3	4	134	1	0	0	0	0	1	0	0	0	10980	1348	47	3	410	3	OR13A1	10	45799291	Missense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10		45799291	89735456	22	9696											
NOC3L	64318	bcgsc.ca	37	chr10	96094473	96094473	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cctcaaaaagttcagtagcaGatctaaatcacaaacacaaa	4	10	4	1	rs201691751	alternate_allele	TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	NOC3L	NM_022451	exon20	c.C2192A	p.S731Y	GTAGCAGATCTAA		56	4	0.07	53	0	0		67		68	0	0				T	96094473	G	T	96094473	3	4	134	1	0	0	0	0	1	0	0	0	10560	942	33	3	218	3	NOC3L	10	96094473	Missense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10	50295182	96094473	39440274	23	9697											
C10orf76	79591	mdanderson.org	37	chr10	103769735	103769735	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaatgtcaggcacttactGtactgagattttctcatggg	10	7	2	2	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_024541	exon12	c.C877A	p.Q293K	CTTACTGTACTGA		50	3	0.06	66	1	0.0151515152				17	1	0.06				T	103769735	G	T	103769735	3	4	134	1	0	0	0	0	1	0	0	0	1620	1391	48	3	1252	3	C10orf76	10	103769735	Missense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10	7675262	103769735	31765012	24	9698											
CDHR5	53841	broad.mit.edu	37	chr11	621227	621227	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggtggcagtgtggctgggTtccacattctcccccggagt	15	12	1	0	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	CDHR5	NM_021924	exon7	c.A642C	p.E214D	GCTGGGTTCCACA		87	11	0.13	100	9	0.09		77		7	0	0				G	621227	T	G	621227	3	3	134	1	0	0	0	0	1	0	0	0	3144	1722	60	4	1931	4	CDHR5	11	621227	Missense_Mutation	SNP	T	TCGA-YU-A90Y-01A-11D-A435-10		621227	134385289	25	9699											
RAB3IL1	5866	ucsc.edu;bcgsc.ca	37	chr11	61675532	61675532	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaggcacccaccttctgCgctctgtgcagctcctcctt	8	18	2	0	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	RAB3IL1,NS,carcinoma,-1,1	RAB3IL1	NM_001271686	exon2	c.G399A	p.A133A	CTTCTGCGCTCTG		30	4	0.13	38	0	0		39	1	24	0	0				T	61675532	C	T	61675532	2	4	134	1	0	0	0	0	0	0	0	1	12988	755	27	1		1	RAB3IL1	11	61675532	Silent	SNP	C	TCGA-YU-A90Y-01A-11D-A435-10	61054305	61675532	73330984	26	9700											
ANKRD13D	338692	mdanderson.org	37	chr11	67066580	67066580	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaagatggaaactgttagCggctacgaggccaaggcagg	16	7	0	2	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_207354	exon7	c.C783T	p.S261S	TGTTAGCGGCTAC		50	3	0.06	66	0	0				52	0	0				T	67066580	C	T	67066580	2	4	134	1	0	0	0	0	0	0	0	1	640	767	27	1		1	ANKRD13D	11	67066580	Silent	SNP	C	TCGA-YU-A90Y-01A-11D-A435-10	5391048	67066580	67939936	27	9701											
HEPHL1	341208	mdanderson.org	37	chr11	93836181	93836181	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actattcaacagtaaactttGtgaaggtaaggtggagaaag	11	4	1	2	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	HEPHL1,NS,carcinoma,-1,1	HEPHL1	NM_001098672	exon15	c.G2677T	p.V893L	AACTTTGTGAAGG		53	3	0.06	77	0	0		-1	1	0	0					T	93836181	G	T	93836181	3	4	134	1	0	0	0	0	1	0	0	0	7095	1377	48	3	2735	3	HEPHL1	11	93836181	Missense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10	26769601	93836181	41170335	28	9702											
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	108139142	108139142	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctttttatttttaggtgccAttaatcctttagctgaagaa	7	6	0	2	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_000051	exon18	c.A2644G	p.I882V	GGTGCCATTAATC		87	26	0.3	72	0	0				3	1	0.33				G	108139142	A	G	108139142	3	3	134	1	0	0	0	0	1	0	0	0	1108	217	8	4	2710	4	ATM	11	108139142	Missense_Mutation	SNP	A	TCGA-YU-A90Y-01A-11D-A435-10	14302961	108139142	26867374	29	9703											
CHD4	1108	hgsc.bcm.edu	37	chr12	6711150	6711150	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatcatcatcatcatcctcCtcctcctcctcctccttccg	2	20	4	0	rs150832622	bycluster;by1000genomes	TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_001273	exon4	c.G414T	p.E138D	ATCCTCCTCCTCC		95	4	0.04	33	0	0	0.002			104	0	0				A	6711150	C	A	6711150	3	1	134	1	0	0	0	0	1	0	0	0	3349	680	24	3	5472	3	CHD4	12	6711150	Missense_Mutation	SNP	C	TCGA-YU-A90Y-01A-11D-A435-10		6711150	127140745	30	9704											
KRT3	3850	hgsc.bcm.edu	37	chr12	53183951	53183951	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagagatggagccaaagcCgctgccaccgctgaaaccgc	12	15	0	2	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	KRT3,rectum,carcinoma,0,1	KRT3	NM_057088	exon9	c.G1762A	p.G588S	CAAAGCCGCTGCC		25	6	0.24	20	0	0		0	1	0	0					T	53183951	C	T	53183951	3	4	134	1	0	0	0	0	1	0	0	0	8508	652	23	1	128	1	KRT3	12	53183951	Missense_Mutation	SNP	C	TCGA-YU-A90Y-01A-11D-A435-10	46472801	53183951	80667944	31	9705											
ITGB7	3695	mdanderson.org	37	chr12	53586314	53586314	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgaaggccccacactctGcacagtccctgtgtagtaga	9	14	1	2	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_000889	exon14	c.C1955A	p.A652E	CACTCTGCACAGT		40	3	0.08	47	0	0				57	0	0				T	53586314	G	T	53586314	3	4	134	1	0	0	0	0	1	0	0	0	7943	1319	46	2	453	2	ITGB7	12	53586314	Missense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10	402363	53586314	80265581	32	9706											
TAOK3	51347	broad.mit.edu;mdanderson.org	37	chr12	118682740	118682740	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ataggacatcttcttaattgCcaccacctcactggtgtgag	8	11	3	1	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	TAOK3	NM_016281	exon4	c.G151A	p.A51T	TAATTGCCACCAC		62	4	0.06	59	0	0		151		13	0	0				T	118682740	C	T	118682740	3	4	134	1	0	0	0	0	1	0	0	0	15605	739	26	2	2617	2	TAOK3	12	118682740	Missense_Mutation	SNP	C	TCGA-YU-A90Y-01A-11D-A435-10	65096426	118682740	15169155	33	9707											
CYFIP1	23191	broad.mit.edu;mdanderson.org	37	chr15	22954288	22954288	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accacgccatccggcacaccGtctatgccgcactgcaggac	9	18	1	0	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	CYFIP1	NM_014608	exon14	c.G1438T	p.V480F	CACACCGTCTATG		92	4	0.04	115	0	0		159		66	0	0				T	22954288	G	T	22954288	3	4	134	1	0	0	0	0	1	0	0	0	4160	1145	40	1	1488	1	CYFIP1	15	22954288	Missense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10		22954288	79577104	34	9708											
FMN1	342184	mdanderson.org	37	chr15	33261197	33261197	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggcggaggtggtagcGgtggcccagcactcacaggt	19	9	1	0	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_001103184	exon4	c.C2036A	p.P679Q	GGTAGCGGTGGCC		27	2	0.07	38	0	0				1	0	0				T	33261197	G	T	33261197	3	4	134	1	0	0	0	0	1	0	0	0	5981	1116	39	1	1610	1	FMN1	15	33261197	Missense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10	10306909	33261197	69270195	35	9709											
VPS13C	54832	mdanderson.org	37	chr15	62276086	62276086	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcagcaggactatcctccGgattggtttcaaatttaatt	9	8	2	0	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_020821	exon20	c.C1847A	p.P616Q	TCCTCCGGATTGG		59	3	0.05	84	0	0				2	0	0				T	62276086	G	T	62276086	3	4	134	1	0	0	0	0	1	0	0	0	17250	1116	39	1	9706	1	VPS13C	15	62276086	Missense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10	29014889	62276086	40255306	36	9710											
SOX8	30812	mdanderson.org	37	chr16	1032207	1032207	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcggcggcggcggcggcgcGctcaaagccaagccgcatgt	17	15	1	0	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_014587	exon1	c.G285A	p.A95A	CGGCGCGCTCAAA		13	2	0.15	9	0	0				4	0	0				A	1032207	G	A	1032207	2	1	134	1	0	0	0	0	0	0	0	1	15010	1074	38	1		1	SOX8	16	1032207	Silent	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10		1032207	89322546	37	9711											
PPL	5493	mdanderson.org	37	chr16	4945266	4945266	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agctggccccacgcacctgcTccccctcaaagtcacagagt	8	18	2	1	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_002705	exon11	c.A1238G	p.E413G	ACCTGCTCCCCCT		48	3	0.06	57	0	0				13	0	0				C	4945266	T	C	4945266	3	2	134	1	0	0	0	0	1	0	0	0	12382	1551	54	4	4080	4	PPL	16	4945266	Missense_Mutation	SNP	T	TCGA-YU-A90Y-01A-11D-A435-10	3913059	4945266	85409487	38	9712											
NOD2	64127	mdanderson.org	37	chr16	50741855	50741855	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggaattaccagtcccattGgccctgcctttggaaggtag	11	11	0	0	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_022162	exon3	c.G630T	p.L210F	CCCATTGGCCCTG		92	4	0.04	112	0	0				3	0	0				T	50741855	G	T	50741855	3	4	134	1	0	0	0	0	1	0	0	0	10563	1339	47	3	640	3	NOD2	16	50741855	Missense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10	45796589	50741855	39612898	39	9713											
RRAD	6236	mdanderson.org	37	chr16	66958768	66958768	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgaagatgcgcgccagggcGctcttgcccacgccgggcgc	15	17	1	1	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_004165	exon2	c.C315A	p.S105R	CAGGGCGCTCTTG		14	2	0.14	15	0	0				140	0	0				T	66958768	G	T	66958768	3	4	134	1	0	0	0	0	1	0	0	0	13722	1078	38	1	627	1	RRAD	16	66958768	Missense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10	16216913	66958768	23395985	40	9714											
CCDC43	124808	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	42759494	42759494	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tctcaattagggtggcaatgGcctgtacttcatctgggagg	13	8	3	0	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_001099225	exon3	c.C305G	p.A102G	GCAATGGCCTGTA		172	8	0.05	157	0	0				55	1	0.02				C	42759494	G	C	42759494	3	2	134	1	0	0	0	0	1	0	0	0	2835	1203	42	5	381	5	CCDC43	17	42759494	Missense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10		42759494	38435716	41	9715											
HEXIM1	0	broad.mit.edu	37	chr17	43229643	43229644	+	RNA	INS	-	-	C													atattagaccctttttctttINSatttttttttttttttgaga					rs146564091	bycluster;by1000genomes	TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	HEXIM1	.	.	.	.	TTTCTTTATTTTT		7	2	0.29	6	0	0		25		0	0					C	43229644	-	C	43229643	6	5	134	0	1	1	1	0	0	0	0	0	7116	1769	61	0		0	HEXIM1	17	43229643	RNA	INS	-	TCGA-YU-A90Y-01A-11D-A435-10	470149	43229643	37965567	42	9716											
ZFR2	23217	mdanderson.org	37	chr19	3831689	3831689	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcaggtggggttgtaggaGggcggggggtaggaggtcac	24	4	1	0	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_015174	exon4	c.C567A	p.P189P	GTAGGAGGGCGGG		26	3	0.12	36	0	0				0	0					T	3831689	G	T	3831689	2	4	134	1	0	0	0	0	0	0	0	1	17717	987	35	3		3	ZFR2	19	3831689	Silent	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10		3831689	55297294	43	9717											
PRR22	163154	mdanderson.org	37	chr19	5783886	5783886	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtatggaggcagccccggGgccttgaggtagggctgagg	21	8	0	2	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_001134316	exon3	c.C372A	p.A124A	CCCCGGGGCCTTG		36	3	0.08	29	0	0				35	0	0				T	5783886	G	T	5783886	2	4	134	1	0	0	0	0	0	0	0	1	12644	1219	43	3		3	PRR22	19	5783886	Silent	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10	1952197	5783886	53345097	44	9718											
PRKCSH	5589	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr19	11558391	11558391	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagaagaggctgaagaagaGgaggaggaggaggattccga	19	3	0	5	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	PRKCSH,NS,carcinoma,0,1	PRKCSH	NM_001001329	exon11	c.G987A	p.E329E	AGAAGAGGAGGAG		77	5	0.06	67	0	0		0	1	101	3	0.03				A	11558391	G	A	11558391	2	1	134	1	0	0	0	0	0	0	0	1	12567	991	35	3		3	PRKCSH	19	11558391	Silent	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10	5774505	11558391	47570592	45	9719											
CCDC105	126402	mdanderson.org	37	chr19	15132449	15132449	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagattaaatatgacgttaGgactgatgaggggaactatc	11	4	0	4	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	CCDC105,NS,carcinoma,0,2	CCDC105	NM_173482	exon5	c.G1063T	p.G355X	ACGTTAGGACTGA		55	3	0.05	58	0	0		0	2	0	0					T	15132449	G	T	15132449	4	4	134	1	0	0	0	0	0	1	0	0	2758	1001	35	3	1081	3	CCDC105	19	15132449	Nonsense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10	3574058	15132449	43996534	46	9720											
IFI30	10437	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	18288094	18288094	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtatgtgccctgggtcaccGtcaatggggtaagaatcttt	12	8	3	1	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	IFI30	NM_006332	exon5	c.G628A	p.V210I	GTCACCGTCAATG		113	6	0.05	136	0	0		12		1685	0	0				A	18288094	G	A	18288094	3	1	134	1	0	0	0	0	1	0	0	0	7558	1145	40	1	646	1	IFI30	19	18288094	Missense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10	3155645	18288094	40840889	47	9721											
ZNF573	126231	hgsc.bcm.edu	37	chr19	38260728	38260728	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccacaactggtttagaaatgGaatgtcctccttataagaaa	7	8	0	2	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_001172690	exon4	c.C212A	p.S71Y	GAAATGGAATGTC		98	4	0.04	111	0	0				0	0					T	38260728	G	T	38260728	3	4	134	1	0	0	0	0	1	0	0	0	18061	1174	41	3	1918	3	ZNF573	19	38260728	Missense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10	19972634	38260728	20868255	48	9722											
OPA3	80207	mdanderson.org	37	chr19	46087973	46087973	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caagcggcttgctgacctgcCggatgcccaagtatagcagc	12	13	0	1	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_001017989	exon1	c.G50A	p.R17Q	ACCTGCCGGATGC		48	3	0.06	60	0	0				23	0	0				T	46087973	C	T	46087973	3	4	134	1	0	0	0	0	1	0	0	0	10919	652	23	1	902	1	OPA3	19	46087973	Missense_Mutation	SNP	C	TCGA-YU-A90Y-01A-11D-A435-10	7827245	46087973	13041010	49	9723											
HSD17B14	51171	mdanderson.org	37	chr19	49318335	49318335	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcctgggcctggccgattgCccccaccaggctggagatgt	14	14	0	1	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_016246	exon6	c.G433A	p.A145T	CGATTGCCCCCAC		50	3	0.06	85	0	0				30	0	0				T	49318335	C	T	49318335	3	4	134	1	0	0	0	0	1	0	0	0	7423	739	26	2	395	2	HSD17B14	19	49318335	Missense_Mutation	SNP	C	TCGA-YU-A90Y-01A-11D-A435-10	3230362	49318335	9810648	50	9724											
SYT3	84258	hgsc.bcm.edu;broad.mit.edu	37	chr19	51128793	51128793	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcagacgccgcccctcGctgatcagggaggccttcac	10	16	4	2	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_032298	exon6	c.C1431A	p.S477R	CCCCTCGCTGATC		97	4	0.04	81	0	0				8	0	0				T	51128793	G	T	51128793	3	4	134	1	0	0	0	0	1	0	0	0	15531	1078	38	1	353	1	SYT3	19	51128793	Missense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10	1810458	51128793	8000190	51	9725											
ZNF551	90233	broad.mit.edu	37	chr19	58198322	58198322	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagttattacaagtggggtGaatacagaaaagcttcaagc	10	5	1	2	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	ZNF551	NM_138347	exon3	c.G679A	p.E227K	TGGGGTGAATACA		44	5	0.11	57	4	0.0701754386		65		10	0	0				A	58198322	G	A	58198322	3	1	134	1	0	0	0	0	1	0	0	0	18039	1291	45	3	641	3	ZNF551	19	58198322	Missense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10	7069529	58198322	930661	52	9726											
SIGLEC1	6614	mdanderson.org	37	chr20	3673619	3673619	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgcagctccaggcgcaggGtgttggggacagaggctgct	17	11	0	1	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_023068	exon14	c.C3668A	p.T1223N	CGCAGGGTGTTGG		41	3	0.07	48	0	0				36	0	0				T	3673619	G	T	3673619	3	4	134	1	0	0	0	0	1	0	0	0	14359	1261	44	3	1493	3	SIGLEC1	20	3673619	Missense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10		3673619	59351901	53	9727											
MMP11	4320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	24124604	24124604	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgtgtagacagtcccgtgCcccgcagggccactgactgg	15	14	0	2	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_005940	exon7	c.C1267A	p.P423T	CCCGTGCCCCGCA		81	14	0.17	86	0	0				94	21	0.22				A	24124604	C	A	24124604	3	1	134	1	0	0	0	0	1	0	0	0	9697	739	26	2	1293	2	MMP11	22	24124604	Missense_Mutation	SNP	C	TCGA-YU-A90Y-01A-11D-A435-10		24124604	27179962	54	9728											
SH3BP1	23616	mdanderson.org	37	chr22	38038946	38038946	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catccagaatcagctggcccGcatcctggccgagtttgaga	11	13	1	2	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_018957	exon5	c.G329A	p.R110H	TGGCCCGCATCCT		30	3	0.1	49	0	0				82	1	0.01				A	38038946	G	A	38038946	3	1	134	1	0	0	0	0	1	0	0	0	14297	1087	38	1	347	1	SH3BP1	22	38038946	Missense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10	13914342	38038946	13265620	55	9729											
CELSR1	9620	mdanderson.org	37	chr22	46931226	46931226	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttaggcccagcgctgccGccccccagaaaggtggaggc	13	15	1	1	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_014246	exon1	c.C1842T	p.G614G	GCTGCCGCCCCCC		22	3	0.14	35	0	0				5	0	0				A	46931226	G	A	46931226	2	1	134	1	0	0	0	0	0	0	0	1	3243	1074	38	1		1	CELSR1	22	46931226	Silent	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10	8892280	46931226	4373340	56	9730											
GRAMD4	23151	broad.mit.edu;mdanderson.org	37	chr22	47022780	47022780	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggagtctccaaatgcctcGgacaccgaatgcagcgacga	12	13	1	0	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	GRAMD4,colon,carcinoma,+1,1	GRAMD4	NM_015124	exon1	c.G84T	p.S28S	TGCCTCGGACACC		77	4	0.05	107	0	0		53	1	10	0	0				T	47022780	G	T	47022780	2	4	134	1	0	0	0	0	0	0	0	1	6792	1103	39	1		1	GRAMD4	22	47022780	Silent	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10	91554	47022780	4281786	57	9731											
SYTL4	94121	mdanderson.org	37	chrX	99956557	99956557	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgacaagtattggttttggGactcaaacggcccaggctct	11	11	2	0	novel		TCGA-YU-A90Y-01A-11D-A435-10	TCGA-YU-A90Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	32056480-ba82-46ee-bed1-c4ec50b3614c	68dac3a8-75ad-4877-bccf-f8e831ed8b21	.	.	NM_001129896	exon4	c.C223A	p.P75T	TTTTGGGACTCAA		45	3	0.07	78	0	0				1	0	0				T	99956557	G	T	99956557	3	4	134	1	0	0	0	0	1	0	0	0	15541	1174	41	3	1852	3	SYTL4	23	99956557	Missense_Mutation	SNP	G	TCGA-YU-A90Y-01A-11D-A435-10		99956557	55314003	58	9732											
ARHGEF16	27237	mdanderson.org	37	chr1	3397126	3397126	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caatgtccgcaggatggagcGtctgcgggtggagacggacg	18	9	1	1	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_014448	exon15	c.G2105T	p.R702L	TGGAGCGTCTGCG		20	4	0.2	33	0	0				52	0	0				T	3397126	G	T	3397126	3	4	135	1	0	0	0	0	1	0	0	0	896	1145	40	1	2159	1	ARHGEF16	1	3397126	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10		3397126	245853495	1	9733											
CASZ1	54897	mdanderson.org	37	chr1	10699273	10699273	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcgaggactccccagctGcggcggcggcggcggcggcg	19	16	0	0	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_001079843	exon21	c.C5006A	p.A1669E	CCAGCTGCGGCGG		14	2	0.14	13	0	0				0	0					T	10699273	G	T	10699273	3	4	135	1	0	0	0	0	1	0	0	0	2703	1319	46	2	277	2	CASZ1	1	10699273	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10	7302147	10699273	238551348	2	9734											
KIAA2013	90231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	11982843	11982843	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgggccatgtgctcatcAtgggccaggatggccttgag	15	10	2	1	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_138346	exon2	c.T1737G	p.H579Q	CTCATCATGGGCC		237	72	0.3	195	0	0				374	120	0.32				C	11982843	A	C	11982843	3	2	135	1	0	0	0	0	1	0	0	0	8308	214	8	4	175	4	KIAA2013	1	11982843	Missense_Mutation	SNP	A	TCGA-YU-A912-01A-11D-A435-10	1283570	11982843	237267778	3	9735											
SPEN	23013	hgsc.bcm.edu	37	chr1	16174549	16174549	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagcagcggcggtcgccgGcacgccgcccagcatggtcc	15	18	0	0	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	.	.	.	.	TCGCCGGCACGCC		100	13	0.13	104	0	0				15	2	0.13				T	16174549	G	T	16174549	1	4	135	0	1	0	0	0	0	0	0	0	15093	1218	42	2		2	SPEN	1	16174549	RNA	SNP	G	TCGA-YU-A912-01A-11D-A435-10	4191706	16174549	233076072	4	9736											
DNM3	26052	hgsc.bcm.edu	37	chr1	171810829	171810829	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatggaggagctgatcccGctggtgaaccgtctgcagga	16	9	1	3	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	DNM3,caecum,carcinoma,+1,1	DNM3	NM_001136127	exon1	c.G33T	p.P11P	GATCCCGCTGGTG		47	2	0.04	63	0	0		1	1	2	0	0				T	171810829	G	T	171810829	2	4	135	1	0	0	0	0	0	0	0	1	4700	1074	38	1		1	DNM3	1	171810829	Silent	SNP	G	TCGA-YU-A912-01A-11D-A435-10	155636280	171810829	77439792	5	9737											
FMN2	56776	mdanderson.org	37	chr1	240371244	240371244	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagcgggcataccccctccGcccccacttcccggagcggg	13	19	0	0	rs200328010		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	FMN2,right_upper_lobe,carcinoma,+1,1	FMN2	NM_020066	exon5	c.G3132A	p.P1044P	CCCTCCGCCCCCA		58	7	0.12	76	2	0.0263157895	0.002	1	1	1	0	0				A	240371244	G	A	240371244	2	1	135	1	0	0	0	0	0	0	0	1	5982	1074	38	1		1	FMN2	1	240371244	Silent	SNP	G	TCGA-YU-A912-01A-11D-A435-10	68560415	240371244	8879377	6	9738											
KIF26B	55083	mdanderson.org	37	chr1	245851927	245851927	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgagcggggagctcccgcCggccatggggaagacggccc	18	14	0	2	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_018012	exon12	c.C5642T	p.P1881L	TCCCGCCGGCCAT		26	2	0.08	44	0	0				0	0					T	245851927	C	T	245851927	3	4	135	1	0	0	0	0	1	0	0	0	8336	652	23	1	5688	1	KIF26B	1	245851927	Missense_Mutation	SNP	C	TCGA-YU-A912-01A-11D-A435-10	5480683	245851927	3398694	7	9739											
ARHGEF4	50649	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	131675018	131675018	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagcagggaaggaggccagGgtccgcgcggcttgggcaca	19	10	0	1	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	ARHGEF4	.	.	.	.	GGCCAGGGTCCGC		138	32	0.23	149	1	0.0067114094		89		1	1	1				A	131675018	G	A	131675018	3	1	135	1	0	0	0	0	1	0	0	0	905	1247	43	3		3	ARHGEF4	2	131675018	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10		131675018	111524355	8	9740											
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	230663622	230663622	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatggtatcctttgaggcagCcctggcaaggccactacctc	11	13	0	1	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_004238	exon22	c.G3226A	p.A1076T	AGGCAGCCCTGGC		118	33	0.28	121	0	0				85	27	0.32				T	230663622	C	T	230663622	3	4	135	1	0	0	0	0	1	0	0	0	16616	739	26	2	2832	2	TRIP12	2	230663622	Missense_Mutation	SNP	C	TCGA-YU-A912-01A-11D-A435-10	98988604	230663622	12535751	9	9741											
STK25	10494	mdanderson.org	37	chr2	242437664	242437664	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagaccttctgtgaactgtGcagggccgtccccttgtgaa	11	12	1	3	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_001271977	exon9	c.C1018A	p.H340N	AACTGTGCAGGGC		47	3	0.06	56	0	0				188	2	0.01				T	242437664	G	T	242437664	3	4	135	1	0	0	0	0	1	0	0	0	15349	1319	46	2	278	2	STK25	2	242437664	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10	11774042	242437664	761709	10	9742											
SCN5A	6331	mdanderson.org	37	chr3	38592963	38592963	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccctcggatcagtctgaGgatgcggcctattcgggcca	14	13	2	1	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_198056	exon28	c.C4900A	p.L1634I	GTCTGAGGATGCG		52	3	0.06	99	0	0				2	0	0				T	38592963	G	T	38592963	3	4	135	1	0	0	0	0	1	0	0	0	13975	1000	35	3	1154	3	SCN5A	3	38592963	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10		38592963	159429467	11	9743											
ZBTB47	92999	broad.mit.edu	37	chr3	42700893	42700893	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agagagctctgaggaggaggAgggggaggagggggaggctg	25	3	1	2	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	ZBTB47	NM_145166	exon2	c.A1046G	p.E349G	AGGAGGAGGGGGA		7	2	0.29	15	0	0		39		0	0					G	42700893	A	G	42700893	3	3	135	1	0	0	0	0	1	0	0	0	17606	304	11	4	1048	4	ZBTB47	3	42700893	Missense_Mutation	SNP	A	TCGA-YU-A912-01A-11D-A435-10	4107930	42700893	155321537	12	9744											
DRD3	1814	mdanderson.org	37	chr3	113858539	113858539	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatggagcagacagtgggGtcccctgtggatgagaaggg	19	6	0	3	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_000796	exon5	c.C531A	p.D177E	AGTGGGGTCCCCT		44	4	0.09	69	0	0				0	0					T	113858539	G	T	113858539	3	4	135	1	0	0	0	0	1	0	0	0	4784	1252	44	3	683	3	DRD3	3	113858539	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10	71157646	113858539	84163891	13	9745											
YEATS2	55689	mdanderson.org	37	chr3	183504021	183504021	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaccacaatgctgagagtaGcaggaggggttatcacaact	12	8	1	1	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_018023	exon20	c.G2845T	p.A949S	AGAGTAGCAGGAG		41	3	0.07	56	0	0				74	0	0				T	183504021	G	T	183504021	3	4	135	1	0	0	0	0	1	0	0	0	17531	971	34	2	2919	2	YEATS2	3	183504021	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10	69645482	183504021	14518409	14	9746											
CPZ	8532	mdanderson.org	37	chr4	8594640	8594640	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggtgcgagtttgagcggaAccccgccggtaaggccgtcc	17	12	0	1	rs76775183	bycluster	TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_003652	exon1	c.A80C	p.N27T	AGCGGAACCCCGC		14	5	0.36	17	7	0.4117647059				2	0	0				C	8594640	A	C	8594640	3	2	135	1	0	0	0	0	1	0	0	0	3862	43	2	4	82	4	CPZ	4	8594640	Missense_Mutation	SNP	A	TCGA-YU-A912-01A-11D-A435-10		8594640	182559636	15	9747											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	55599340	55599340	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gacatcaagaatgattctaaTtatgtggttaaaggaaacgt	9	4	2	2	rs121913514		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	KIT,NS,malignant_melanoma,+2,48	KIT	NM_000222	exon17	c.T2466A	p.N822K	TTCTAATTATGTG		81	39	0.48	94	0	0		2	48	259	169	0.65				A	55599340	T	A	55599340	3	1	135	1	0	0	0	0	1	0	0	0	8371	1490	52	5	2532	5	KIT	4	55599340	Missense_Mutation	SNP	T	TCGA-YU-A912-01A-11D-A435-10	47004700	55599340	135554936	16	9748											
CDH9	1007	mdanderson.org	37	chr5	26890658	26890658	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atacggtccatatcagtatgCcgatcaacagagtacctggc	9	11	2	1	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	CDH9,NS,malignant_melanoma,-2,3	CDH9	NM_016279	exon8	c.G1269A	p.R423R	AGTATGCCGATCA		47	3	0.06	72	0	0		-2	3	0	0					T	26890658	C	T	26890658	2	4	135	1	0	0	0	0	0	0	0	1	3139	726	26	2		2	CDH9	5	26890658	Silent	SNP	C	TCGA-YU-A912-01A-11D-A435-10		26890658	154024602	17	9749											
FRS3	10817	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	41738715	41738715	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatggcggcccgggtgctgGtgggcttctgcagtggggtc	21	9	1	0	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_006653	exon7	c.C1121T	p.T374I	GTGCTGGTGGGCT		61	6	0.1	62	0	0				15	4	0.27				A	41738715	G	A	41738715	3	1	135	1	0	0	0	0	1	0	0	0	6096	1261	44	3	361	3	FRS3	6	41738715	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10		41738715	129376352	18	9750											
RUNX2	860	mdanderson.org	37	chr6	45390482	45390482	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agcaacagcagcagcagcagCaggaggcggcggcggcggct	18	12	0	0	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	RUNX2_ENST00000352853,NS,carcinoma,0,2	RUNX2_ENST00000352853	NM_001024630	exon3	c.C211G	p.Q71E	CAGCAGCAGGAGG		22	2	0.09	31	0	0		0	2	0	0					G	45390482	C	G	45390482	3	3	135	1	0	0	0	0	1	0	0	0	13799	711	25	5	233	5	RUNX2	6	45390482	Missense_Mutation	SNP	C	TCGA-YU-A912-01A-11D-A435-10	3651767	45390482	125724585	19	9751											
GNAT3	346562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	80141182	80141182	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcatcctcctgaagcttttTctccagttcttttgatcttt	5	11	3	2	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_001102386	exon1	c.A61G	p.K21E	GCTTTTTCTCCAG		82	12	0.15	97	0	0				0	0					C	80141182	T	C	80141182	3	2	135	1	0	0	0	0	1	0	0	0	6554	1792	62	4	1033	4	GNAT3	7	80141182	Missense_Mutation	SNP	T	TCGA-YU-A912-01A-11D-A435-10		80141182	78997481	20	9752											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	82389980	82389980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaatgtcctgcaggacttAgactgaatcgaaaagtttca	10	7	1	3	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_033026	exon24	c.T15263C	p.L5088P	GGACTTAGACTGA		398	68	0.17	468	0	0				0	0					G	82389980	A	G	82389980	3	3	135	1	0	0	0	0	1	0	0	0	11629	420	15	4	173	4	PCLO	7	82389980	Missense_Mutation	SNP	A	TCGA-YU-A912-01A-11D-A435-10	2248798	82389980	76748683	21	9753											
WASL	8976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	123388725	123388725	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcgttctcctgcggggtgaGcaacagggaccccacgttgg	14	13	1	1	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_003941	exon1	c.C64T	p.L22F	GGGTGAGCAACAG		38	11	0.29	38	0	0				95	33	0.35				A	123388725	G	A	123388725	3	1	135	1	0	0	0	0	1	0	0	0	17315	971	34	2	1497	2	WASL	7	123388725	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10	40998745	123388725	35749938	22	9754											
ABCB8	11194	broad.mit.edu	37	chr7	150725641	150725641	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggtcgggattcggggtggCccattcccaggcaggctgct	17	12	0	0	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	ABCB8	NM_007188	exon1	c.C39T	p.G13G	GGGTGGCCCATTC		66	22	0.33	55	2	0.0363636364		65		63	17	0.27				T	150725641	C	T	150725641	3	4	135	1	0	0	0	0	1	0	0	0	47	726	26	2	41	2	ABCB8	7	150725641	Missense_Mutation	SNP	C	TCGA-YU-A912-01A-11D-A435-10	27336916	150725641	8413022	23	9755											
ARHGEF10	9639	mdanderson.org	37	chr8	1853876	1853876	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttaatgtgtgccaccgtcaGctcacggtaagtgcataaat	10	9	2	0	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_014629	exon17	c.G1961T	p.S654I	CCGTCAGCTCACG		40	3	0.08	52	0	0				118	1	0.01				T	1853876	G	T	1853876	3	4	135	1	0	0	0	0	1	0	0	0	891	971	34	2	2023	2	ARHGEF10	8	1853876	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10		1853876	144510146	24	9756											
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	77768507	77768507	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cggaatgaacggtccatcctCcttgccgggatttccacaaa	9	13	0	1	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_024721	exon10	c.C9350T	p.S3117F	CATCCTCCTTGCC		115	22	0.19	107	0	0				1	0	0				T	77768507	C	T	77768507	3	4	135	1	0	0	0	0	1	0	0	0	17692	855	30	3	9384	3	ZFHX4	8	77768507	Missense_Mutation	SNP	C	TCGA-YU-A912-01A-11D-A435-10	75914631	77768507	68595515	25	9757											
RSPO2	340419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	109094847	109094847	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tcagaatgatgagggcaaagGagaaaaggcgaaactgcatc	13	6	1	4	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_178565	exon2	c.C20G	p.S7C	GCAAAGGAGAAAA		65	10	0.15	70	0	0				0	0					C	109094847	G	C	109094847	3	2	135	1	0	0	0	0	1	0	0	0	13761	1174	41	5	731	5	RSPO2	8	109094847	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10	31326340	109094847	37269175	26	9758											
SCRIB	23513	mdanderson.org	37	chr8	144874951	144874951	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaggggggccctcggcctgGggcacgcgcacctccagctc	15	16	0	0	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_182706	exon30	c.C4104A	p.P1368P	GGCCTGGGGCACG		41	3	0.07	38	0	0				230	0	0				T	144874951	G	T	144874951	2	4	135	1	0	0	0	0	0	0	0	1	13990	1219	43	3		3	SCRIB	8	144874951	Silent	SNP	G	TCGA-YU-A912-01A-11D-A435-10	35780104	144874951	1489071	27	9759											
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu	37	chr8	144940608	144940608	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgcgcacggggtcgatgaCgaagccggtggccgcctgcg	18	12	0	1	rs377487212		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	EPPK1,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	EPPK1	NM_031308	exon1	c.G6814A	p.V2272I	CGATGACGAAGCC		62	9	0.15	72	1	0.0138888889		0	1	50	0	0				T	144940608	C	T	144940608	3	4	135	1	0	0	0	0	1	0	0	0	5218	536	19	1	452	1	EPPK1	8	144940608	Missense_Mutation	SNP	C	TCGA-YU-A912-01A-11D-A435-10	65657	144940608	1423414	28	9760											
TTC39B	158219	mdanderson.org	37	chr9	15175099	15175099	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caattcaaatagagtgaacgGcactaggtagtggtcatact	10	7	2	2	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_152574	exon19	c.C1876A	p.P626T	TGAACGGCACTAG		40	3	0.08	64	0	0				11	0	0				T	15175099	G	T	15175099	3	4	135	1	0	0	0	0	1	0	0	0	16769	1203	42	2	180	2	TTC39B	9	15175099	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10		15175099	126038332	29	9761											
SLC28A3	64078	mdanderson.org	37	chr9	86917157	86917157	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttagaagccttctgccaGgagacagcatctcatcaatt	8	10	3	2	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_001199633	exon5	c.C482A	p.P161H	CTGCCAGGAGACA		52	3	0.06	95	0	0				4	0	0				T	86917157	G	T	86917157	3	4	135	1	0	0	0	0	1	0	0	0	14587	1000	35	3	1649	3	SLC28A3	9	86917157	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10	71742058	86917157	54296274	30	9762											
CRB2	286204	mdanderson.org	37	chr9	126129537	126129537	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gccgatgcctgcagcgctctGacccggccctctacgggggt	14	16	2	1	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_173689	exon5	c.G841T	p.D281Y	CGCTCTGACCCGG		20	3	0.15	37	0	0				0	0					T	126129537	G	T	126129537	3	4	135	1	0	0	0	0	1	0	0	0	3872	1290	45	3	859	3	CRB2	9	126129537	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10	39212380	126129537	15083894	31	9763											
SEC16A	9919	mdanderson.org	37	chr9	139336215	139336215	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcagggcaagcctagttcaGcaccaggtgcttcctctggc	12	13	2	0	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_014866	exon32	c.C7066A	p.L2356M	AGTTCAGCACCAG		52	3	0.06	85	0	0				78	0	0				T	139336215	G	T	139336215	3	4	135	1	0	0	0	0	1	0	0	0	14039	962	34	2	11	2	SEC16A	9	139336215	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10	13206678	139336215	1877216	32	9764											
EHMT1	79813	mdanderson.org	37	chr9	140729282	140729282	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagctcttcagctgccgctgCggctcccccaagtgccggca	11	17	2	0	rs371136319		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_024757	exon27	c.C3774T	p.C1258C	CCGCTGCGGCTCC		54	3	0.06	84	0	0				83	0	0				T	140729282	C	T	140729282	2	4	135	1	0	0	0	0	0	0	0	1	5009	776	27	1		1	EHMT1	9	140729282	Silent	SNP	C	TCGA-YU-A912-01A-11D-A435-10	1393067	140729282	484149	33	9765											
PDE3B	5140	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	14666502	14666502	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgatccgaccccggaggaGgtccagctgcgtgtcgttag	15	11	0	1	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	PDE3B	NM_000922	exon1	c.G881T	p.R294M	GGAGGAGGTCCAG		79	5	0.06	132	0	0		98		5	0	0				T	14666502	G	T	14666502	3	4	135	1	0	0	0	0	1	0	0	0	11684	1000	35	3	883	3	PDE3B	11	14666502	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10		14666502	120340014	34	9766											
WNT11	7481	mdanderson.org	37	chr11	75905750	75905750	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtccgcacatcctccccagCggttcccgggcccgggtggc	13	18	0	0	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_004626	exon3	c.G458A	p.R153H	CCCCAGCGGTTCC		48	3	0.06	81	0	0				1	0	0				T	75905750	C	T	75905750	3	4	135	1	0	0	0	0	1	0	0	0	17443	768	27	1	618	1	WNT11	11	75905750	Missense_Mutation	SNP	C	TCGA-YU-A912-01A-11D-A435-10	61239248	75905750	59100766	35	9767											
SYTL2	54843	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	85415906	85415906	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaattccggactcaccttccGcttcagagggtaccatctca	7	14	3	1	rs374075595	alternate_allele	TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_206927	exon9	c.C3283A	p.R1095R	CCTTCCGCTTCAG		115	5	0.04	160	0	0				7	0	0				T	85415906	G	T	85415906	2	4	135	1	0	0	0	0	0	0	0	1	15539	1086	38	1		1	SYTL2	11	85415906	Silent	SNP	G	TCGA-YU-A912-01A-11D-A435-10	9510156	85415906	49590610	36	9768											
DDX11	1663	mdanderson.org	37	chr12	31255198	31255198	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tattccaggaacctaagagcGcacaccaggtggagcaggtg	13	10	0	1	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_030653	exon22	c.G2224A	p.A742T	AAGAGCGCACACC		375	16	0.04	203	0	0				307	9	0.03				A	31255198	G	A	31255198	3	1	135	1	0	0	0	0	1	0	0	0	4366	1087	38	1	2306	1	DDX11	12	31255198	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10		31255198	102596697	37	9769											
KIF21A	55605	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr12	39735383	39735383	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcctcctcctcctcctcCtcttcttcatcctcatgatc	1	20	5	1	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	KIF21A,NS,carcinoma,0,2	KIF21A	NM_001173464	exon14	c.G1845A	p.E615E	CTCCTCCTCTTCT		146	6	0.04	136	0	0		0	2	17	0	0				T	39735383	C	T	39735383	2	4	135	1	0	0	0	0	0	0	0	1	8329	680	24	3		3	KIF21A	12	39735383	Silent	SNP	C	TCGA-YU-A912-01A-11D-A435-10	8480185	39735383	94116512	38	9770											
SPRYD4	283377	broad.mit.edu	37	chr12	56862413	56862413	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgttctttgcgcttgtgccGctggggagccaaacgattgg	14	10	1	0	rs142431089	alternate_allele	TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	SPRYD4	NM_207344	exon1	c.G38T	p.R13L	TGTGCCGCTGGGG		114	4	0.04	74	0	0		13		28	0	0				T	56862413	G	T	56862413	3	4	135	1	0	0	0	0	1	0	0	0	15165	1087	38	1	40	1	SPRYD4	12	56862413	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10	17127030	56862413	76989482	39	9771											
LTB4R	1241	broad.mit.edu	37	chr14	24785074	24785074	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgtattgctcactgctcccTttttccttcacttcctggcc	5	17	2	0	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	LTB4R	NM_181657	exon2	c.T217C	p.F73L	GCTCCCTTTTTCC		88	3	0.03	123	0	0		18		9	0	0				C	24785074	T	C	24785074	3	2	135	1	0	0	0	0	1	0	0	0	9115	1609	56	4	219	4	LTB4R	14	24785074	Missense_Mutation	SNP	T	TCGA-YU-A912-01A-11D-A435-10		24785074	82564466	40	9772											
MESP2	145873	broad.mit.edu;mdanderson.org	37	chr15	90320173	90320173	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcaagggcaggggcaaggAcaggggcaaggacaggggca	22	7	0	0	rs113636330		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	MESP2	NM_001039958	exon1	c.A585G	p.G195G	GCAAGGACAGGGG		37	4	0.11	34	0	0		20		0	0					G	90320173	A	G	90320173	2	3	135	1	0	0	0	0	0	0	0	1	9532	262	10	4		4	MESP2	15	90320173	Silent	SNP	A	TCGA-YU-A912-01A-11D-A435-10		90320173	12211219	41	9773											
UBN1	29855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	4903071	4903071	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gttcggattacactcaccctCtttgaaccagatcacaaacg	6	13	3	2	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_001079514	exon2	c.C153G	p.L51L	CACCCTCTTTGAA		71	9	0.13	89	0	0				57	17	0.3				G	4903071	C	G	4903071	2	3	135	1	0	0	0	0	0	0	0	1	16952	900	32	5		5	UBN1	16	4903071	Silent	SNP	C	TCGA-YU-A912-01A-11D-A435-10		4903071	85451682	42	9774											
UBN1	29855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	4927071	4927071	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccaaggatgccatcgtcaCaggccctgcccccgggtcct	10	18	1	0	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_001079514	exon16	c.C3224G	p.T1075R	TCGTCACAGGCCC		54	16	0.3	48	0	0				106	41	0.39				G	4927071	C	G	4927071	3	3	135	1	0	0	0	0	1	0	0	0	16952	478	17	5	3282	5	UBN1	16	4927071	Missense_Mutation	SNP	C	TCGA-YU-A912-01A-11D-A435-10	24000	4927071	85427682	43	9775											
ABCA6	23460	broad.mit.edu	37	chr17	67124787	67124787	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attccagtagtaaaggcaaaAgggctacaaatattcaaaat	7	6	1	0	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	ABCA6	NM_080284	exon8	c.T1092C	p.P364P	GGCAAAAGGGCTA		146	4	0.03	176	0	0		210		0	0					G	67124787	A	G	67124787	2	3	135	1	0	0	0	0	0	0	0	1	36	59	3	4		4	ABCA6	17	67124787	Silent	SNP	A	TCGA-YU-A912-01A-11D-A435-10		67124787	14070423	44	9776											
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	1061799	1061799	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgttttgggctgctgggtGtgaatggagcagggaagacg	19	4	0	2	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_019112	exon41	c.G5482A	p.V1828M	CTGGGTGTGAATG		127	31	0.24	106	0	0				23	2	0.09				A	1061799	G	A	1061799	3	1	135	1	0	0	0	0	1	0	0	0	37	1377	48	3	5640	3	ABCA7	19	1061799	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10		1061799	58067184	45	9777											
FAM108A1	81926	hgsc.bcm.edu	37	chr19	1881263	1881263	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcacgcagcgaacatacatGcaggagacgcggttgccgcg	15	12	0	1	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	FAM108A1,NS,carcinoma,0,2	FAM108A1	NM_031213	exon2	c.C303T	p.C101C	ATACATGCAGGAG		65	3	0.05	43	1	0.023255814		0	2	203	0	0				A	1881263	G	A	1881263	2	1	135	1	0	0	0	0	0	0	0	1	5422	1311	46	2		2	FAM108A1	19	1881263	Silent	SNP	G	TCGA-YU-A912-01A-11D-A435-10	819464	1881263	57247720	46	9778											
EVI5L	115704	mdanderson.org	37	chr19	7927017	7927017	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccccccaggcccatctgGcccgcggcggccgctggaag	13	19	2	0	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_001159944	exon15	c.G1654T	p.A552S	CATCTGGCCCGCG		20	2	0.1	27	1	0.037037037				13	0	0				T	7927017	G	T	7927017	3	4	135	1	0	0	0	0	1	0	0	0	5318	1203	42	2	1712	2	EVI5L	19	7927017	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10	6045754	7927017	51201966	47	9779											
ZNF441	126068	mdanderson.org	37	chr19	11891239	11891239	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacctcgtatatgtaagttGtgtggaaacgcctttatttg	11	6	0	0	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_152355	exon4	c.G600T	p.L200F	TAAGTTGTGTGGA		129	5	0.04	118	0	0				1	0	0				T	11891239	G	T	11891239	3	4	135	1	0	0	0	0	1	0	0	0	17970	1368	48	3	614	3	ZNF441	19	11891239	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10	3964222	11891239	47237744	48	9780											
MED26	9441	bcgsc.ca	37	chr19	16687978	16687978	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ggtcgcacggcgttgacgggGatcttgccactgtgcttgtc	15	11	1	1	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	MED26	NM_004831	exon3	c.C663A	p.I221I	GACGGGGATCTTG		84	5	0.06	87	0	0		25		40	0	0				T	16687978	G	T	16687978	2	4	135	1	0	0	0	0	0	0	0	1	9493	1164	41	3		3	MED26	19	16687978	Silent	SNP	G	TCGA-YU-A912-01A-11D-A435-10	4796739	16687978	42441005	49	9781											
USHBP1	83878	mdanderson.org	37	chr19	17366295	17366295	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgcccgttcccaccgcaGctgctccagcaggagcacgt	10	18	1	0	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_031941	exon10	c.C1591A	p.L531M	ACCGCAGCTGCTC		52	3	0.06	55	0	0				0	0					T	17366295	G	T	17366295	3	4	135	1	0	0	0	0	1	0	0	0	17096	962	34	2	536	2	USHBP1	19	17366295	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10	678317	17366295	41762688	50	9782											
CATSPERG	57828	mdanderson.org	37	chr19	38827887	38827887	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccacgttatgtgcggcccaGccatgttccctgccggtcct	11	16	0	0	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_021185	exon2	c.G13T	p.A5S	GGCCCAGCCATGT		37	3	0.08	41	0	0				1	0	0				T	38827887	G	T	38827887	3	4	135	1	0	0	0	0	1	0	0	0	2710	971	34	2	15	2	CATSPERG	19	38827887	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10	21461592	38827887	20301096	51	9783											
AXL	558	bcgsc.ca	37	chr19	41745121	41745121	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccctggagctgcagggggAcgggtctgtgtccaatctga	16	10	2	1	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	AXL	NM_021913	exon9	c.A1187G	p.D396G	AGGGGGACGGGTC		72	4	0.06	70	2	0.0285714286		126		7	0	0				G	41745121	A	G	41745121	3	3	135	1	0	0	0	0	1	0	0	0	1236	275	10	4	1221	4	AXL	19	41745121	Missense_Mutation	SNP	A	TCGA-YU-A912-01A-11D-A435-10	2917234	41745121	17383862	52	9784											
CCDC97	90324	mdanderson.org	37	chr19	41825732	41825732	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctgcttggaggaagaggaAgaggaggaggacagtgacga	19	5	0	3	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_052848	exon3	c.A756G	p.E252E	AGAGGAAGAGGAG		21	2	0.1	24	0	0				69	0	0				G	41825732	A	G	41825732	2	3	135	1	0	0	0	0	0	0	0	1	2895	69	3	4		4	CCDC97	19	41825732	Silent	SNP	A	TCGA-YU-A912-01A-11D-A435-10	80611	41825732	17303251	53	9785											
MYH14	79784	mdanderson.org	37	chr19	50781508	50781508	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctggtgatggggagaggGcacgagcggaggctgctgag	23	6	0	3	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_001145809	exon30	c.G3994T	p.A1332S	GAGAGGGCACGAG		30	3	0.1	38	0	0				8	0	0				T	50781508	G	T	50781508	3	4	135	1	0	0	0	0	1	0	0	0	10080	1203	42	2	4108	2	MYH14	19	50781508	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10	8955776	50781508	8347475	54	9786											
MICAL3	57553	bcgsc.ca	37	chr22	18358228	18358228	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctacctgtcggagggagtcGgaggagggagaggcggggcg	23	7	0	1	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	MICAL3	NM_001136004	exon19	c.C2490A	p.S830S	GGAGTCGGAGGAG		43	4	0.09	73	0	0		53		0	0					T	18358228	G	T	18358228	2	4	135	1	0	0	0	0	0	0	0	1	9618	1103	39	1		1	MICAL3	22	18358228	Silent	SNP	G	TCGA-YU-A912-01A-11D-A435-10		18358228	32946338	55	9787											
EMID1	129080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	29627121	29627121	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcagccccggagatggagGcctccagggtgagtgtcaga	18	10	1	3	novel		TCGA-YU-A912-01A-11D-A435-10	TCGA-YU-A912-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	468cbb8a-c062-4b63-8e48-644496a795e2	047fbeb8-426a-4b89-9920-743bf10f3b2a	.	.	NM_133455	exon6	c.G578T	p.G193V	ATGGAGGCCTCCA		209	37	0.18	207	0	0				8	3	0.38				T	29627121	G	T	29627121	3	4	135	1	0	0	0	0	1	0	0	0	5119	1203	42	2	600	2	EMID1	22	29627121	Missense_Mutation	SNP	G	TCGA-YU-A912-01A-11D-A435-10	11268893	29627121	21677445	56	9788											
MMEL1	79258	mdanderson.org	37	chr1	2525328	2525328	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaagttcaaggcctgtggctGctccttgctgaagaaggggg	15	8	1	2	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_033467	exon19	c.C1792A	p.Q598K	GTGGCTGCTCCTT		34	3	0.09	81	0	0				4	0	0				T	2525328	G	T	2525328	3	4	136	1	0	0	0	0	1	0	0	0	9693	1328	46	2	571	2	MMEL1	1	2525328	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10		2525328	246725293	1	9789											
ZMYM6	9204	bcgsc.ca	37	chr1	35486070	35486070	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttggacacatccatactccTttaaaaaaaaaaagaaaaga	5	7	0	2	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	ZMYM6	NM_007167	exon4	c.94-2A>G	.	TACTCCTTTAAAA		72	6	0.08	134	0	0		110		0	0					C	35486070	T	C	35486070	5	2	136	1	0	0	0	0	0	0	1	0	17761	1623	56	4	3941	4	ZMYM6	1	35486070	Splice_Site	SNP	T	TCGA-YU-A94D-01A-11D-A435-10	32960742	35486070	213764551	2	9790											
SLC35D1	23169	mdanderson.org	37	chr1	67519691	67519691	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgacgtctatgaacttcCgccatggctgccgcagcagc	11	14	1	2	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_015139	exon1	c.G6A	p.A2A	AACTTCCGCCATG		42	3	0.07	82	0	0				6	0	0				T	67519691	C	T	67519691	2	4	136	1	0	0	0	0	0	0	0	1	14635	639	23	1		1	SLC35D1	1	67519691	Silent	SNP	C	TCGA-YU-A94D-01A-11D-A435-10	32033621	67519691	181730930	3	9791											
OVGP1	5016	bcgsc.ca	37	chr1	111957533	111957533	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgactcacaggggtcacagaCtgatgacccacaggggtcag	13	11	3	4	rs112145355	bycluster	TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	OVGP1	NM_002557	exon11	c.G1590A	p.Q530Q	CACAGACTGATGA		93	16	0.17	173	2	0.0115606936		177		4	0	0				T	111957533	C	T	111957533	2	4	136	1	0	0	0	0	0	0	0	1	11371	564	20	3		3	OVGP1	1	111957533	Silent	SNP	C	TCGA-YU-A94D-01A-11D-A435-10	44437842	111957533	137293088	4	9792											
LOR	4014	hgsc.bcm.edu	37	chr1	153233506	153233506	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcggtggcggtggcggCggcagcggcggtggtggctg	26	9	0	0	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	LOR,caecum,carcinoma,0,1	LOR	NM_000427	exon2	c.C81T	p.G27G	TGGCGGCGGCAGC		72	5	0.07	98	1	0.0102040816		0	1	0	0					T	153233506	C	T	153233506	2	4	136	1	0	0	0	0	0	0	0	1	8941	755	27	1		1	LOR	1	153233506	Silent	SNP	C	TCGA-YU-A94D-01A-11D-A435-10	41275973	153233506	96017115	5	9793											
VSIG8	391123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	159827898	159827898	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accttggacagtgacaatgaCcttccgggtggccatggtgg	14	10	0	2	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001013661	exon3	c.G412T	p.V138F	CAATGACCTTCCG		154	79	0.51	282	1	0.0035460993				0	0					A	159827898	C	A	159827898	3	1	136	1	0	0	0	0	1	0	0	0	17285	507	18	3	852	3	VSIG8	1	159827898	Missense_Mutation	SNP	C	TCGA-YU-A94D-01A-11D-A435-10	6594392	159827898	89422723	6	9794											
NR1I3	9970	mdanderson.org	37	chr1	161200619	161200619	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaccgatcccggggccttcGctgctggcccttgatgtagc	13	14	0	1	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	NR1I3_ENST00000428574,NS,carcinoma,0,4	NR1I3_ENST00000428574	NM_001077482	exon8	c.C928A	p.R310R	GCCTTCGCTGCTG		50	3	0.06	75	0	0		0	4	2	0	0				T	161200619	G	T	161200619	2	4	136	1	0	0	0	0	0	0	0	1	10668	1095	38	1		1	NR1I3	1	161200619	Silent	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	1372721	161200619	88050002	7	9795											
KIF14	9928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	200529865	200529865	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attacctggacactggcagcTttattgttaccgttttctag	8	9	1	0	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_014875	exon26	c.A4215G	p.K1405K	GGCAGCTTTATTG		206	71	0.34	262	0	0				14	6	0.43				C	200529865	T	C	200529865	2	2	136	1	0	0	0	0	0	0	0	1	8317	1606	56	4		4	KIF14	1	200529865	Silent	SNP	T	TCGA-YU-A94D-01A-11D-A435-10	39329246	200529865	48720756	8	9796											
GUK1	2987	mdanderson.org	37	chr1	228336514	228336514	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cttggccagcatgtggagtgGaggagatgctgcccctgtgg	17	9	0	1	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001242840	exon7	c.G687T	p.W229C	GGAGTGGAGGAGA		30	3	0.1	62	0	0				437	0	0				T	228336514	G	T	228336514	3	4	136	1	0	0	0	0	1	0	0	0	6940	1189	41	3		3	GUK1	1	228336514	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	27806649	228336514	20914107	9	9797											
FBXO11	80204	broad.mit.edu	37	chr2	48036814	48036814	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaatctgattgccttctaGtgttgcagttgcgtgatttg	10	6	2	2	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	FBXO11	NM_001190274	exon20	c.C2371A	p.L791I	CTTCTAGTGTTGC		104	4	0.04	116	0	0		127		187	0	0				T	48036814	G	T	48036814	3	4	136	1	0	0	0	0	1	0	0	0	5759	1020	36	3	428	3	FBXO11	2	48036814	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10		48036814	195162559	10	9798											
VPS54	51542	mdanderson.org	37	chr2	64160840	64160840	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctcctggaatagcagatgatGatgtgtgctctttgctggat	12	7	1	3	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_016516	exon12	c.C1706A	p.S569X	GATGATGATGTGT		47	3	0.06	47	0	0				43	0	0				T	64160840	G	T	64160840	4	4	136	1	0	0	0	0	0	1	0	0	17275	1294	45	3	1275	3	VPS54	2	64160840	Nonsense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	16124026	64160840	179038533	11	9799											
TMEM182	130827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr2	103380825	103380825	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaactgcacacatgcttaCctgtctccgtaccccttcat	5	15	2	1	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_144632	exon3	c.C270A	p.Y90X	TGCTTACCTGTCT		136	37	0.27	153	0	0				19	4	0.21				A	103380825	C	A	103380825	4	1	136	1	0	0	0	0	0	1	0	0	16160	518	18	3	280	3	TMEM182	2	103380825	Nonsense_Mutation	SNP	C	TCGA-YU-A94D-01A-11D-A435-10	39219985	103380825	139818548	12	9800											
PDE6D	64708	broad.mit.edu	37	chr2	232646544	232646544	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaaagaagatgacagcccGcagagagttaacttctgttt	9	8	2	4	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	PDE6D	.	.	.	.	CAGCCCGCAGAGA		162	4	0.02	193	0	0		8		3	0	0				A	232646544	G	A	232646544	3	1	136	1	0	0	0	0	1	0	0	0	11694	1102	38	1		1	PDE6D	2	232646544	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	129265719	232646544	10552829	13	9801											
ADCY5	111	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	123049765	123049765	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tcgatcatgtccatgcccatCtccacacagcagtgggcgtg	10	14	2	0	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	ADCY5	NM_183357	exon5	c.G1617A	p.E539E	GCCCATCTCCACA		191	7	0.04	296	0	0		169		13	0	0				T	123049765	C	T	123049765	2	4	136	1	0	0	0	0	0	0	0	1	296	912	32	3		3	ADCY5	3	123049765	Silent	SNP	C	TCGA-YU-A94D-01A-11D-A435-10		123049765	74972665	14	9802											
MUC4	4585	hgsc.bcm.edu	37	chr3	195508174	195508174	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggaagtgctggtgacaGgaagaggggtggcgtgacct	19	6	0	4	rs200854768	byfrequency	TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	MUC4_ENST00000463781,NS,carcinoma,-1,3	MUC4_ENST00000463781	NM_018406	exon2	c.C10277T	p.P3426L	GTGACAGGAAGAG		50	3	0.06	79	1	0.0126582278	0.008	-1	3	0	0					A	195508174	G	A	195508174	3	1	136	1	0	0	0	0	1	0	0	0	10025	1000	35	3		3	MUC4	3	195508174	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	72458409	195508174	2514256	15	9803											
TXK	7294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	48115254	48115254	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgacaattggctgagccaCggcctgcgacgctgggtgta	14	10	0	2	rs200958317	by1000genomes	TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_003328	exon3	c.G144A	p.P48P	GAGCCACGGCCTG		56	22	0.39	89	0	0	0			0	0					T	48115254	C	T	48115254	2	4	136	1	0	0	0	0	0	0	0	1	16847	523	19	1		1	TXK	4	48115254	Silent	SNP	C	TCGA-YU-A94D-01A-11D-A435-10		48115254	143039022	16	9804											
MEGF10	84466	broad.mit.edu	37	chr5	126781227	126781227	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgattcctaccagatcgGggccattgcaggcatcatca	10	12	2	2	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	MEGF10	NM_032446	exon21	c.G2570T	p.G857V	AGATCGGGGCCAT		171	4	0.02	273	0	0		152		5	0	0				T	126781227	G	T	126781227	3	4	136	1	0	0	0	0	1	0	0	0	9509	1232	43	3	2644	3	MEGF10	5	126781227	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10		126781227	54134033	17	9805											
EGR1	1958	mdanderson.org	37	chr5	137803157	137803157	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgaacgcccttacgcttGcccagtggagtcctgtgatc	10	15	0	1	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001964	exon2	c.G1019T	p.C340F	ACGCTTGCCCAGT		42	3	0.07	80	1	0.0125				47	0	0				T	137803157	G	T	137803157	3	4	136	1	0	0	0	0	1	0	0	0	4997	1319	46	2	1025	2	EGR1	5	137803157	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	11021930	137803157	43112103	18	9806											
TFAP2D	83741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	50740418	50740418	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gctctaagcactttccaaacAgttctcagtgaaatgctgaa	7	10	2	2	rs375378399		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	TFAP2D,NS,carcinoma,+1,2	TFAP2D	NM_172238	exon8	c.A1200C	p.T400T	CCAAACAGTTCTC		78	28	0.36	95	0	0		1	2	0	0					C	50740418	A	C	50740418	2	2	136	1	0	0	0	0	0	0	0	1	15849	175	7	4		4	TFAP2D	6	50740418	Silent	SNP	A	TCGA-YU-A94D-01A-11D-A435-10		50740418	120374649	19	9807											
COX7A2	1347	mdanderson.org	37	chr6	75947704	75947704	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	catatatggcatatgctgttCctaaaaataaaaaacaaaaa	4	6	0	0	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001865	exon4	c.G290T	p.G97V	GCTGTTCCTAAAA		28	3	0.11	36	0	0				764	0	0				A	75947704	C	A	75947704	3	1	136	1	0	0	0	0	1	0	0	0	3803	869	30	3	61	3	COX7A2	6	75947704	Missense_Mutation	SNP	C	TCGA-YU-A94D-01A-11D-A435-10	25207286	75947704	95167363	20	9808											
TPBG	7162	broad.mit.edu	37	chr6	83075780	83075780	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgttttagccctgataggcGctattttcctcctggttttg	9	9	0	1	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	TPBG	NM_001166392	exon2	c.G1102T	p.A368S	ATAGGCGCTATTT		103	4	0.04	167	0	0		37		136	0	0				T	83075780	G	T	83075780	3	4	136	1	0	0	0	0	1	0	0	0	16454	1087	38	1	1104	1	TPBG	6	83075780	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	7128076	83075780	88039287	21	9809											
DGKI	9162	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	137076063	137076063	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtccccagcctgctgtgctCtttcttgaggtgtcttaccc	10	14	3	1	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	DGKI_ENST00000288490,NS,carcinoma,+1,2	DGKI	NM_004717	exon34	c.G3101T	p.R1034I	TGTGCTCTTTCTT		100	7	0.07	153	0	0		335	2	4	0	0				A	137076063	C	A	137076063	3	1	136	1	0	0	0	0	1	0	0	0	4499	913	32	3	100	3	DGKI	7	137076063	Missense_Mutation	SNP	C	TCGA-YU-A94D-01A-11D-A435-10		137076063	22062600	22	9810											
ABCB8	11194	broad.mit.edu;mdanderson.org	37	chr7	150741097	150741097	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctgggggccagaagcagcGcctggccatcgcccgagccc	15	16	1	1	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	ABCB8	NM_007188	exon15	c.G1805T	p.R602L	AGCAGCGCCTGGC		76	4	0.05	169	0	0		65		42	0	0				T	150741097	G	T	150741097	3	4	136	1	0	0	0	0	1	0	0	0	47	1087	38	1	1863	1	ABCB8	7	150741097	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	13665034	150741097	8397566	23	9811											
HTR5A	3361	mdanderson.org	37	chr7	154862923	154862923	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcacgagctgtccgggcGccgctggcagctaggtcgga	18	12	0	0	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_024012	exon1	c.G314T	p.R105L	CCGGGCGCCGCTG		15	2	0.13	35	0	0				0	0					T	154862923	G	T	154862923	3	4	136	1	0	0	0	0	1	0	0	0	7493	1087	38	1	316	1	HTR5A	7	154862923	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	4121826	154862923	4275740	24	9812											
KIF13B	23303	mdanderson.org	37	chr8	28929560	28929560	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcctcgggctcggcctcagGggcggtgggcatggaccccg	18	15	1	0	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_015254	exon39	c.C4795A	p.P1599T	CCTCAGGGGCGGT		16	2	0.13	12	0	0				2	0	0				T	28929560	G	T	28929560	3	4	136	1	0	0	0	0	1	0	0	0	8316	1232	43	3	693	3	KIF13B	8	28929560	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10		28929560	117434462	25	9813											
PXDNL	137902	mdanderson.org	37	chr8	52321586	52321586	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggccgctggcacacgcgggGctggagcgcgcgaagagcat	18	13	0	1	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_144651	exon17	c.C2598A	p.S866R	CGCGGGGCTGGAG		36	3	0.08	63	0	0				2	0	0				T	52321586	G	T	52321586	3	4	136	1	0	0	0	0	1	0	0	0	12899	1194	42	2	1821	2	PXDNL	8	52321586	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	23392026	52321586	94042436	26	9814											
CPSF1	29894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	145619906	145619906	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccattgcagtggcacagggCggtcacgggccccttctgct	14	14	2	0	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_013291	exon31	c.G3520A	p.A1174T	ACAGGGCGGTCAC		86	26	0.3	93	0	0				359	97	0.27				T	145619906	C	T	145619906	3	4	136	1	0	0	0	0	1	0	0	0	3847	768	27	1	843	1	CPSF1	8	145619906	Missense_Mutation	SNP	C	TCGA-YU-A94D-01A-11D-A435-10	93298320	145619906	744116	27	9815											
KIAA0020	9933	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr9	2837296	2837296	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttgaactgctttacacccTttttcccaagttttgtgata	5	10	1	2	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	KIAA0020	NM_014878	exon3	c.A188G	p.K63R	ACACCCTTTTTCC		133	5	0.04	250	0	0		56		48	0	0				C	2837296	T	C	2837296	3	2	136	1	0	0	0	0	1	0	0	0	8193	1609	56	4	1822	4	KIAA0020	9	2837296	Missense_Mutation	SNP	T	TCGA-YU-A94D-01A-11D-A435-10		2837296	138376135	28	9816											
DFNB31	25861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	117266554	117266554	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcagtccttccttctcagcTagagagcctggttccaccag	9	15	1	1	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001173425	exon1	c.A528G	p.L176L	CTCAGCTAGAGAG		50	17	0.34	110	0	0				7	2	0.29				C	117266554	T	C	117266554	2	2	136	1	0	0	0	0	0	0	0	1	4483	1509	53	4		4	DFNB31	9	117266554	Silent	SNP	T	TCGA-YU-A94D-01A-11D-A435-10	114429258	117266554	23946877	29	9817											
KCNA4	3739	mdanderson.org	37	chr11	30033833	30033833	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctcctcttcctcctcttcCtcctcctcctcatcttcctc	0	24	4	0	rs369906337		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_002233	exon2	c.G393A	p.E131E	CTCTTCCTCCTCC		46	3	0.07	76	0	0				1	0	0				T	30033833	C	T	30033833	2	4	136	1	0	0	0	0	0	0	0	1	8048	680	24	3		3	KCNA4	11	30033833	Silent	SNP	C	TCGA-YU-A94D-01A-11D-A435-10		30033833	104972683	30	9818											
FERMT3	83706	mdanderson.org	37	chr11	63988602	63988602	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgacttcggcatctcctatGtcatggtcaggtatggcccc	10	14	3	0	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_178443	exon13	c.G1672T	p.V558F	TCCTATGTCATGG		13	2	0.15	33	0	0				22	0	0				T	63988602	G	T	63988602	3	4	136	1	0	0	0	0	1	0	0	0	5851	1377	48	3	1718	3	FERMT3	11	63988602	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	33954769	63988602	71017914	31	9819											
CCDC88B	283234	mdanderson.org	37	chr11	64116835	64116835	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtggtgcggggcaaggaGttgggggaccggctggagca	22	7	0	0	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_032251	exon15	c.G2649T	p.E883D	CAAGGAGTTGGGG		34	4	0.12	81	0	0				6	0	0				T	64116835	G	T	64116835	3	4	136	1	0	0	0	0	1	0	0	0	2884	1020	36	3	2707	3	CCDC88B	11	64116835	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	128233	64116835	70889681	32	9820											
TPCN2	219931	mdanderson.org	37	chr11	68837924	68837924	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcctgcgtattccaagaacCgggcctatgccatcttcttc	7	14	2	1	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_139075	exon9	c.C856T	p.R286W	AAGAACCGGGCCT		21	2	0.1	80	0	0				25	0	0				T	68837924	C	T	68837924	3	4	136	1	0	0	0	0	1	0	0	0	16456	643	23	1	890	1	TPCN2	11	68837924	Missense_Mutation	SNP	C	TCGA-YU-A94D-01A-11D-A435-10	4721089	68837924	66168592	33	9821											
SRPR	6734	bcgsc.ca	37	chr11	126136799	126136799	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggactggtttgctggtaGccaaaggaccatcagaacct	12	10	1	1	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	SRPR,NS,carcinoma,0,2	SRPR	NM_003139	exon5	c.C545A	p.A182D	CTGGTAGCCAAAG		152	9	0.06	279	6	0.0215053763		60	2	146	3	0.02				T	126136799	G	T	126136799	3	4	136	1	0	0	0	0	1	0	0	0	15217	971	34	2	1411	2	SRPR	11	126136799	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	57298875	126136799	8869717	34	9822											
RBP5	0	broad.mit.edu	37	chr12	7281645	7281674	+	RNA	DEL	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	-													gttgcgcctgaccttggcttTtcctgaggaaggaacctgga					novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	RBP5	.	.	.	.	TGGCTTTTCCTGA		6	3	0.5	6	0	0		20		19	0	0				-	7281674	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	-	7281645	6	5	136	0	1	1	0	1	0	0	0	0	13210	1856	64	0		0	RBP5	12	7281645	RNA	DEL	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TCGA-YU-A94D-01A-11D-A435-10		7281645	126570250	35	9823											
LRP6	4040	broad.mit.edu	37	chr12	12317329	12317329	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtttgtttccagagaaattcGtctgatatctgctctccgtg	9	9	3	2	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	LRP6,NS,carcinoma,+1,2	LRP6	NM_002336	exon9	c.C1930G	p.R644G	AAATTCGTCTGAT		198	5	0.03	150	0	0		170	2	32	0	0				C	12317329	G	C	12317329	3	2	136	1	0	0	0	0	1	0	0	0	9006	1153	40	5	2971	5	LRP6	12	12317329	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	5035684	12317329	121534566	36	9824											
HAL	3034	mdanderson.org	37	chr12	96389642	96389642	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagctgcgcgtcctggcagGgcactgccagccattcccca	12	16	0	1	rs188894951	by1000genomes;alternate_allele	TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_002108	exon2	c.C47A	p.P16H	TGGCAGGGCACTG		19	3	0.16	29	0	0				0	0					T	96389642	G	T	96389642	3	4	136	1	0	0	0	0	1	0	0	0	6987	1232	43	3	2006	3	HAL	12	96389642	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	84072313	96389642	37462253	37	9825											
EID3	493861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	104698695	104698695	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaatttctgaggctatgaTtacatactcctcatactaaa	5	8	2	3	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001008394	exon1	c.T983A	p.I328N	CTATGATTACATA		87	46	0.53	184	0	0				1	0	0				A	104698695	T	A	104698695	3	1	136	1	0	0	0	0	1	0	0	0	5015	1493	52	5	985	5	EID3	12	104698695	Missense_Mutation	SNP	T	TCGA-YU-A94D-01A-11D-A435-10	8309053	104698695	29153200	38	9826											
DIS3	22894	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	73335570	73335571	+	Frame_Shift_Del	DEL	AT	AT	-													aagactgtcccttctaaaccAtactttggaattaataccac					novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	AT	AT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	DIS3	NM_014953	exon19	c.2601_2602del	p.867_868del	TAAACCATACTTT		105	32	0.3	153	0	0		103		41	0	0				-	73335571	AT	-	73335570	7	5	136	1	0	1	0	1	0	0	0	0	4563	224	8	0	287	0	DIS3	13	73335570	Frame_Shift_Del	DEL	AT	TCGA-YU-A94D-01A-11D-A435-10		73335570	41834308	39	9827											
MYCBP2	23077	bcgsc.ca;mdanderson.org	37	chr13	77742671	77742671	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttcaggctggtttcctgtGgtgctatctgtcgactgatt	12	8	2	1	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	MYCBP2	NM_015057	exon40	c.C6006A	p.T2002T	TCCTGTGGTGCTA		129	6	0.05	208	1	0.0048076923		1029		5	0	0				T	77742671	G	T	77742671	2	4	136	1	0	0	0	0	0	0	0	1	10065	1335	47	3		3	MYCBP2	13	77742671	Silent	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	4407101	77742671	37427207	40	9828											
SOCS4	122809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr14	55509766	55509766	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gataatttgttaacatggcaGaaaataatgaaaatattagt	7	2	0	2	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_080867	exon2	c.G7T	p.E3X	ATGGCAGAAAATA		58	27	0.47	107	0	0				8	2	0.25				T	55509766	G	T	55509766	4	4	136	1	0	0	0	0	0	1	0	0	14969	943	33	3	9	3	SOCS4	14	55509766	Nonsense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10		55509766	51839774	41	9829											
TTC9	23508	mdanderson.org	37	chr14	71109248	71109248	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgactgttacaacagcctGgcaggtgagccgcgccgcgc	13	14	0	1	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_015351	exon1	c.G402T	p.L134L	CAGCCTGGCAGGT		19	2	0.11	53	0	0				13	0	0				T	71109248	G	T	71109248	2	4	136	1	0	0	0	0	0	0	0	1	16776	1335	47	3		3	TTC9	14	71109248	Silent	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	15599482	71109248	36240292	42	9830											
CDC42BPB	9578	mdanderson.org	37	chr14	103416135	103416135	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttggctcgcaatgacaccaGgctgggtggattttccttca	11	11	1	1	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_006035	exon26	c.C3416A	p.P1139H	ACACCAGGCTGGG		45	3	0.07	114	0	0				91	0	0				T	103416135	G	T	103416135	3	4	136	1	0	0	0	0	1	0	0	0	3095	1000	35	3	1767	3	CDC42BPB	14	103416135	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	32306887	103416135	3933405	43	9831											
HCN4	10021	mdanderson.org	37	chr15	73615969	73615969	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtttcaggtgccttggcGtctgcccggcaccgaggttg	15	13	2	0	rs201143364	bycluster;by1000genomes;alternate_allele	TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_005477	exon8	c.C2465A	p.T822K	CTTGGCGTCTGCC		20	2	0.1	27	0	0				1	0	0				T	73615969	G	T	73615969	3	4	136	1	0	0	0	0	1	0	0	0	7039	1145	40	1	1150	1	HCN4	15	73615969	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10		73615969	28915423	44	9832											
ADAMTS17	170691	ucsc.edu	37	chr15	100636613	100636613	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accaagtggcaggtcttgccGtccccgctgcagaccccgca	11	17	1	1	rs141443664		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	ADAMTS17	NM_139057	exon15	c.C2085T	p.D695D	CTTGCCGTCCCCG		47	4	0.09	61	0	0		127		8	0	0				A	100636613	G	A	100636613	2	1	136	1	0	0	0	0	0	0	0	1	261	1136	40	1		1	ADAMTS17	15	100636613	Silent	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	27020644	100636613	1894779	45	9833											
MAPK8IP3	23162	mdanderson.org	37	chr16	1817206	1817206	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acctgggccacccgcaccacTccatccgctgcatggctgtt	9	18	0	0	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_015133	exon26	c.T3142C	p.S1048P	CACCACTCCATCC		52	3	0.06	153	0	0				109	1	0.01				C	1817206	T	C	1817206	3	2	136	1	0	0	0	0	1	0	0	0	9335	1551	54	4	3260	4	MAPK8IP3	16	1817206	Missense_Mutation	SNP	T	TCGA-YU-A94D-01A-11D-A435-10		1817206	88537547	46	9834											
NTHL1	4913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	2094711	2094711	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgtccaccgtcaggccccGcgcccgcagtcgctgcatgg	13	18	1	0	rs376048896		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_002528	exon3	c.C469T	p.R157W	GGCCCCGCGCCCG		35	15	0.43	75	0	0				98	44	0.45				A	2094711	G	A	2094711	3	1	136	1	0	0	0	0	1	0	0	0	10745	1086	38	1	485	1	NTHL1	16	2094711	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	277505	2094711	88260042	47	9835											
SEZ6L2	26470	mdanderson.org	37	chr16	29888693	29888693	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccagaggagagaaggcggCggcgcggctgaggtccccgc	19	13	0	3	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001243332	exon11	c.G1808T	p.R603L	AGGCGGCGGCGCG		35	3	0.09	132	0	0				32	0	0				A	29888693	C	A	29888693	3	1	136	1	0	0	0	0	1	0	0	0	14197	768	27	1	995	1	SEZ6L2	16	29888693	Missense_Mutation	SNP	C	TCGA-YU-A94D-01A-11D-A435-10	27793982	29888693	60466060	48	9836											
RRAD	6236	mdanderson.org	37	chr16	66957613	66957613	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcagtggccgggcaaccagCggcccccgtcctggagaaca	14	15	0	1	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	RRAD,colon,carcinoma,-1,1	RRAD	NM_001128850	exon4	c.G455A	p.R152H	AACCAGCGGCCCC		47	3	0.06	112	0	0		-1	1	13	0	0				T	66957613	C	T	66957613	3	4	136	1	0	0	0	0	1	0	0	0	13722	768	27	1	479	1	RRAD	16	66957613	Missense_Mutation	SNP	C	TCGA-YU-A94D-01A-11D-A435-10	37068920	66957613	23397140	49	9837											
IL34	146433	mdanderson.org	37	chr16	70680870	70680870	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catgccccggggcttcacctGgctgcgctgtgagtactggg	15	13	1	1	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001172772	exon2	c.G20T	p.W7L	TCACCTGGCTGCG		39	3	0.08	62	0	0				0	0					T	70680870	G	T	70680870	3	4	136	1	0	0	0	0	1	0	0	0	7737	1357	47	3	22	3	IL34	16	70680870	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	3723257	70680870	19673883	50	9838											
CHST4	10164	mdanderson.org	37	chr16	71571321	71571321	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caaccctactatgtgatgcaGgtcatctgccaaagccagct	8	13	2	1	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001166395	exon2	c.G741T	p.Q247H	GATGCAGGTCATC		52	3	0.06	104	0	0				3	0	0				T	71571321	G	T	71571321	3	4	136	1	0	0	0	0	1	0	0	0	3428	991	35	3	743	3	CHST4	16	71571321	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	890451	71571321	18783432	51	9839											
DPEP1	1800	mdanderson.org	37	chr16	89702799	89702799	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcctgtatgtcaccagcaGtgcaggtggggtcctgacct	12	12	1	1	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001128141	exon4	c.G365T	p.S122I	CCAGCAGTGCAGG		47	3	0.06	154	0	0				1	0	0				T	89702799	G	T	89702799	3	4	136	1	0	0	0	0	1	0	0	0	4740	1029	36	3	375	3	DPEP1	16	89702799	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	18131478	89702799	651954	52	9840											
ZNF286A	57335	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	15611559	15611559	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	agcccccaaaagcagctattCaggtgagccagatagatggg	12	10	1	3	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	ZNF286A	NM_020652	exon5	c.C332T	p.S111L	GCTATTCAGGTGA		144	6	0.04	280	0	0		58		47	4	0.09				T	15611559	C	T	15611559	3	4	136	1	0	0	0	0	1	0	0	0	17880	838	29	3	346	3	ZNF286A	17	15611559	Missense_Mutation	SNP	C	TCGA-YU-A94D-01A-11D-A435-10		15611559	65583651	53	9841											
ABCA6	23460	hgsc.bcm.edu	37	chr17	67136799	67136799	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cttaagaaaattcttgcacaGaagtgctttggtttgctgat	9	6	1	3	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_080284	exon2	c.C46A	p.L16M	TGCACAGAAGTGC		90	4	0.04	122	0	0				1	0	0				T	67136799	G	T	67136799	3	4	136	1	0	0	0	0	1	0	0	0	36	933	33	3	4959	3	ABCA6	17	67136799	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	51525240	67136799	14058411	54	9842											
RNF213	57674	broad.mit.edu	37	chr17	78262016	78262016	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgtcccaggaggggaccGgtccccccacctctgctggt	13	17	1	0	rs199976159	bycluster	TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	RNF213	NM_001256071	exon4	c.G664A	p.G222S	GGGACCGGTCCCC		74	3	0.04	141	0	0		766		6	0	0				A	78262016	G	A	78262016	3	1	136	1	0	0	0	0	1	0	0	0	13528	1116	39	1	825	1	RNF213	17	78262016	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	11125217	78262016	2933194	55	9843											
C19orf35	374872	mdanderson.org	37	chr19	2275721	2275721	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctggcccatcgaggactcGgtggcctcggccaggtattc	14	14	0	0	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_198532	exon4	c.C1380A	p.T460T	GGACTCGGTGGCC		27	3	0.11	71	0	0				0	0					T	2275721	G	T	2275721	2	4	136	1	0	0	0	0	0	0	0	1	1932	1103	39	1		1	C19orf35	19	2275721	Silent	SNP	G	TCGA-YU-A94D-01A-11D-A435-10		2275721	56853262	56	9844											
DUS3L	56931	mdanderson.org	37	chr19	5786832	5786832	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcggctagcttggtgtagcGctgctcccgagagcggccgt	16	12	0	1	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_020175	exon9	c.C1414A	p.R472S	TGTAGCGCTGCTC		51	3	0.06	88	0	0				49	0	0				T	5786832	G	T	5786832	3	4	136	1	0	0	0	0	1	0	0	0	4833	1087	38	1	558	1	DUS3L	19	5786832	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	3511111	5786832	53342151	57	9845											
KEAP1	9817	mdanderson.org	37	chr19	10597469	10597469	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgtaacactccacactgtcCaggaacgtgtgaccatcata	7	13	1	1	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_012289	exon6	c.G1734T	p.L578L	ACTGTCCAGGAAC		52	3	0.06	118	0	0				229	0	0				A	10597469	C	A	10597469	2	1	136	1	0	0	0	0	0	0	0	1	8183	581	21	3		3	KEAP1	19	10597469	Silent	SNP	C	TCGA-YU-A94D-01A-11D-A435-10	4810637	10597469	48531514	58	9846											
ZNF682	91120	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	20117945	20117946	+	Frame_Shift_Del	DEL	CT	CT	-													atttctttttgatccttacaCtcacccacattttccccatc					novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	CT	CT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	ZNF682	NM_033196	exon4	c.366_367del	p.122_123del	CTTACACTCACCC		110	51	0.46	134	0	0		51		11	0	0				-	20117946	CT	-	20117945	7	5	136	1	0	1	0	1	0	0	0	0	18144	564	20	0	1134	0	ZNF682	19	20117945	Frame_Shift_Del	DEL	CT	TCGA-YU-A94D-01A-11D-A435-10	9520476	20117945	39011038	59	9847											
FAM83C	128876	mdanderson.org	37	chr20	33875775	33875775	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctgcaaagccaggtgaaGctgggggcagagggacaggg	20	7	0	2	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_178468	exon4	c.C807A	p.S269R	GGTGAAGCTGGGG		33	3	0.09	83	1	0.0120481928				0	0					T	33875775	G	T	33875775	3	4	136	1	0	0	0	0	1	0	0	0	5666	985	34	2	1440	2	FAM83C	20	33875775	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10		33875775	29149745	60	9848											
SLC32A1	140679	broad.mit.edu	37	chr20	37357187	37357187	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accaagtcttcttcgacgtcGccatcttcgtcatcggcggc	9	15	4	0	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	SLC32A1,NS,carcinoma,0,3	SLC32A1	NM_080552	exon2	c.G1483A	p.A495T	GACGTCGCCATCT		100	4	0.04	161	0	0		81	3	0	0					A	37357187	G	A	37357187	3	1	136	1	0	0	0	0	1	0	0	0	14619	1087	38	1	1489	1	SLC32A1	20	37357187	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	3481412	37357187	25668333	61	9849											
COL6A1	1291	mdanderson.org	37	chr21	47417374	47417374	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gacctaaaggctaccgaggcGatgagggtcccccagggtcc	14	13	0	1	rs372619016	alternate_allele	TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001848	exon21	c.G1438T	p.D480Y	CGAGGCGATGAGG		45	3	0.07	77	0	0				425	0	0				T	47417374	G	T	47417374	3	4	136	1	0	0	0	0	1	0	0	0	3722	1058	37	1	1520	1	COL6A1	21	47417374	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10		47417374	712521	62	9850											
BID	637	mdanderson.org	37	chr22	18220954	18220954	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtctctagggtaggcctgCagcagctgctccagggcagt	14	11	1	0	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_197966	exon5	c.G543A	p.L181L	GGCCTGCAGCAGC		35	3	0.09	63	0	0				118	0	0				T	18220954	C	T	18220954	2	4	136	1	0	0	0	0	0	0	0	1	1429	697	25	2		2	BID	22	18220954	Silent	SNP	C	TCGA-YU-A94D-01A-11D-A435-10		18220954	33083612	63	9851											
TXNRD2	10587	mdanderson.org	37	chr22	19882962	19882962	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacggtgtcaaaggtgcccGtgtcctccttgccggtggtg	16	11	1	0	rs371153395	alternate_allele	TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	.	.	.	.	GTGCCCGTGTCCT		45	3	0.07	105	0	0				66	0	0				T	19882962	G	T	19882962	3	4	136	1	0	0	0	0	1	0	0	0	16869	1145	40	1	685	1	TXNRD2	22	19882962	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	1662008	19882962	31421604	64	9852											
P2RY8	286530	mdanderson.org	37	chrX	1584418	1584418	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccgggcctggtggctcccTccatcccttcagggtgcgca	14	16	1	0	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_178129	exon2	c.A1034G	p.E345G	GCTCCCTCCATCC		55	3	0.05	87	1	0.0114942529				1	0	0				C	1584418	T	C	1584418	3	2	136	1	0	0	0	0	1	0	0	0	11401	1551	54	4	49	4	P2RY8	23	1584418	Missense_Mutation	SNP	T	TCGA-YU-A94D-01A-11D-A435-10		1584418	153686142	65	9853											
PPEF1	5475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	18845518	18845518	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gacttgaacaaagatggaagCattgactttaatgagttttt	9	4	0	4	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_006240	exon19	c.C1875A	p.S625R	TGGAAGCATTGAC		213	66	0.31	209	0	0				3	0	0				A	18845518	C	A	18845518	3	1	136	1	0	0	0	0	1	0	0	0	12351	709	25	2	1937	2	PPEF1	23	18845518	Missense_Mutation	SNP	C	TCGA-YU-A94D-01A-11D-A435-10	17261100	18845518	136425042	66	9854											
SMS	6611	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	21995231	21995231	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	acagatactggcccaccgccGacgggcgcctggttgaatat	12	13	0	2	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_004595	exon5	c.G382C	p.D128H	ACCGCCGACGGGC		232	11	0.05	227	0	0				228	0	0				C	21995231	G	C	21995231	3	2	136	1	0	0	0	0	1	0	0	0	14866	1058	37	5	400	5	SMS	23	21995231	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	3149713	21995231	133275329	67	9855											
ZNF645	158506	broad.mit.edu	37	chrX	22291678	22291678	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcacaccatggtgtcactAccgtctgtgcaacatatgct	8	13	2	0	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	ZNF645	NM_152577	exon1	c.A570G	p.L190L	GTCACTACCGTCT		259	7	0.03	198	1	0.0050505051		67		0	0					G	22291678	A	G	22291678	2	3	136	1	0	0	0	0	0	0	0	1	18117	378	14	4		4	ZNF645	23	22291678	Silent	SNP	A	TCGA-YU-A94D-01A-11D-A435-10	296447	22291678	132978882	68	9856											
MAGEB10	139422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	27839493	27839493	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aggcccgaggagggctggaaGatttgatagatgctctggac	16	7	1	3	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_182506	exon3	c.G70A	p.D24N	CTGGAAGATTTGA		159	50	0.31	154	0	0				0	0					A	27839493	G	A	27839493	3	1	136	1	0	0	0	0	1	0	0	0	9222	942	33	3	72	3	MAGEB10	23	27839493	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	5547815	27839493	127431067	69	9857											
DCAF8L1	139425	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	27998407	27998407	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtccacccactgcaaattGgtaaatattggcaggattca	8	9	1	0	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001017930	exon1	c.C1045A	p.Q349K	CAAATTGGTAAAT		157	10	0.06	140	0	0				0	0					T	27998407	G	T	27998407	3	4	136	1	0	0	0	0	1	0	0	0	4301	1357	47	3	761	3	DCAF8L1	23	27998407	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	158914	27998407	127272153	70	9858											
MED14	9282	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	40569339	40569339	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaattttaattgtaactttGtgaacagatgctgttccagt	7	6	1	2	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	MED14	NM_004229	exon9	c.C1065A	p.H355Q	AACTTTGTGAACA		409	168	0.41	345	2	0.0057971014		108		17	0	0				T	40569339	G	T	40569339	3	4	136	1	0	0	0	0	1	0	0	0	9481	1368	48	3	3391	3	MED14	23	40569339	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	12570932	40569339	114701221	71	9859											
HEPH	9843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	65479954	65479954	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttgcagaatggcgagaacTaccgggcagatgtggtggat	15	7	1	3	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_138737	exon19	c.T3211A	p.Y1071N	GAGAACTACCGGG		97	38	0.39	93	0	0				28	0	0				A	65479954	T	A	65479954	3	1	136	1	0	0	0	0	1	0	0	0	7094	1522	53	5	3285	5	HEPH	23	65479954	Missense_Mutation	SNP	T	TCGA-YU-A94D-01A-11D-A435-10	24910615	65479954	89790606	72	9860											
COL4A5	1287	mdanderson.org	37	chrX	107683387	107683387	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggagtcagcctggctgccgGcttgttcttactggccctga	13	12	2	1	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_000495	exon1	c.G32T	p.G11V	CTGCCGGCTTGTT		43	3	0.07	49	0	0				47	0	0				T	107683387	G	T	107683387	3	4	136	1	0	0	0	0	1	0	0	0	3717	1203	42	2	34	2	COL4A5	23	107683387	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	42203433	107683387	47587173	73	9861											
COL4A5	1287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	107929306	107929306	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggacgcaatggactccctgGctttgatggtgcaggagggc	16	9	0	1	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_000495	exon46	c.G4244A	p.G1415D	TCCCTGGCTTTGA		246	14	0.06	205	0	0				186	13	0.07				A	107929306	G	A	107929306	3	1	136	1	0	0	0	0	1	0	0	0	3717	1203	42	2	4437	2	COL4A5	23	107929306	Missense_Mutation	SNP	G	TCGA-YU-A94D-01A-11D-A435-10	245919	107929306	47341254	74	9862											
CHRDL1	91851	mdanderson.org	37	chrX	109963072	109963072	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacacacctacctctgcataCccggcagcaggaatctggaa	8	14	2	0	novel		TCGA-YU-A94D-01A-11D-A435-10	TCGA-YU-A94D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6cdf8e7a-91c2-467f-a970-16d9a85624d8	9c956f87-fd2f-4e2b-ab4e-777d60094e09	.	.	NM_001143981	exon6	c.G532A	p.V178I	TGCATACCCGGCA		52	3	0.06	58	0	0				14	0	0				T	109963072	C	T	109963072	3	4	136	1	0	0	0	0	1	0	0	0	3395	507	18	3	872	3	CHRDL1	23	109963072	Missense_Mutation	SNP	C	TCGA-YU-A94D-01A-11D-A435-10	2033766	109963072	45307488	75	9863											
TP73	7161	mdanderson.org	37	chr1	3607508	3607508	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgcacggcacctcgccacGgtaggtgtgacgcgccattc	12	17	0	1	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	TP73_ENST00000378288,NS,carcinoma,0,1	TP73_ENST00000378288	NM_001204190	exon1	c.G39T	p.T13T	CGCCACGGTAGGT		59	3	0.05	105	0	0		0	1	0	0					T	3607508	G	T	3607508	2	4	137	1	0	0	0	0	0	0	0	1	16453	1130	39	1		1	TP73	1	3607508	Silent	SNP	G	TCGA-YU-A94I-01A-11D-A435-10		3607508	245643113	1	9864											
HSPG2	3339	mdanderson.org	37	chr1	22200901	22200901	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagggactggacgcactgGccggcagcagggtctccgta	17	12	1	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_005529	exon28	c.C3654A	p.G1218G	GCACTGGCCGGCA		44	3	0.07	79	0	0				74	0	0				T	22200901	G	T	22200901	2	4	137	1	0	0	0	0	0	0	0	1	7473	1190	42	2		2	HSPG2	1	22200901	Silent	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	18593393	22200901	227049720	2	9865											
HTR1D	3352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	23520342	23520342	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagagatgcaggatggagGctgtgcagcacgtgatgtca	15	8	1	2	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_000864	exon1	c.C371T	p.A124V	ATGGAGGCTGTGC		84	38	0.45	117	0	0				42	19	0.45				A	23520342	G	A	23520342	3	1	137	1	0	0	0	0	1	0	0	0	7481	1203	42	2	766	2	HTR1D	1	23520342	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	1319441	23520342	225730279	3	9866											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr1	27057901	27057901	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccggctccatacccctccCagcagtcgacgacacagcag	8	20	0	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_006015	exon3	c.C1609T	p.Q537X	CCCTCCCAGCAGT		106	55	0.52	133	0	0				156	44	0.28				T	27057901	C	T	27057901	4	4	137	1	0	0	0	0	0	1	0	0	910	595	21	3	1619	3	ARID1A	1	27057901	Nonsense_Mutation	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	3537559	27057901	222192720	4	9867											
EPHA10	284656	mdanderson.org	37	chr1	38227303	38227303	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acggtggcgcggcactgcttGtagtagacgcgcaccgagac	15	12	0	2	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_173641	exon3	c.C624A	p.Y208X	CTGCTTGTAGTAG		15	2	0.13	26	0	0				0	0					T	38227303	G	T	38227303	4	4	137	1	0	0	0	0	0	1	0	0	5194	1372	48	3	2500	3	EPHA10	1	38227303	Nonsense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	11169402	38227303	211023318	5	9868											
GATAD2B	57459	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	153784507	153784507	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagttccttacctgccgaagCgtatgatgtctcatgatggt	10	9	1	2	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	GATAD2B,colon,carcinoma,0,1	GATAD2B	NM_020699	exon9	c.G1521A	p.T507T	CCGAAGCGTATGA		70	6	0.09	65	0	0		0	1	53	3	0.06				T	153784507	C	T	153784507	2	4	137	1	0	0	0	0	0	0	0	1	6300	755	27	1		1	GATAD2B	1	153784507	Silent	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	115557204	153784507	95466114	6	9869											
SPTA1	6708	broad.mit.edu	37	chr1	158605702	158605702	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccttctgtatcccactcaCcgggccttggccaactcttt	8	16	3	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	SPTA1	NM_003126	exon39	c.5432+1G>A	.	CACTCACCGGGCC		123	9	0.07	89	0	0		720		0	0					T	158605702	C	T	158605702	5	4	137	1	0	0	0	0	0	0	1	0	15171	521	18	3	1886	3	SPTA1	1	158605702	Splice_Site	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	4821195	158605702	90644919	7	9870											
C2orf16	84226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	27800712	27800712	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtgcccctgaagcaaacaAgtcaagttataggacatgaa	10	8	1	2	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	C2orf16_ENST00000408964,colon,carcinoma,0,2	C2orf16_ENST00000408964	NM_032266	exon1	c.A1273T	p.S425C	CAAACAAGTCAAG		107	30	0.28	100	0	0		0	2	1	0	0				T	27800712	A	T	27800712	3	4	137	1	0	0	0	0	1	0	0	0	2171	72	3	5	1275	5	C2orf16	2	27800712	Missense_Mutation	SNP	A	TCGA-YU-A94I-01A-11D-A435-10		27800712	215398661	8	9871											
HTRA2	27429	broad.mit.edu	37	chr2	74757160	74757160	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgccgagggcggggcggggTgcaggctggagccttcgggc	23	11	0	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	HTRA2	NM_013247	exon1	c.T27G	p.G9G	GCGGGGTGCAGGC		58	21	0.36	40	8	0.2		22		3	0	0				G	74757160	T	G	74757160	2	3	137	1	0	0	0	0	0	0	0	1	7497	1683	59	4		4	HTRA2	2	74757160	Silent	SNP	T	TCGA-YU-A94I-01A-11D-A435-10	46956448	74757160	168442213	9	9872											
UBXN4	23190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	136528187	136528187	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gagaaaaactggaaaagaaaTgttggattataaaagaaaac	9	2	0	3	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_014607	exon8	c.T704A	p.M235K	AAGAAATGTTGGA		361	91	0.25	349	0	0				203	53	0.26				A	136528187	T	A	136528187	3	1	137	1	0	0	0	0	1	0	0	0	16975	1464	51	5	734	5	UBXN4	2	136528187	Missense_Mutation	SNP	T	TCGA-YU-A94I-01A-11D-A435-10	61771027	136528187	106671186	10	9873											
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	148657362	148657362	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ccctattacaacatcctgctCtattccttggtgccacttat	4	14	1	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001616	exon4	c.C423G	p.L141L	CCTGCTCTATTCC		230	68	0.3	251	0	0				34	12	0.35				G	148657362	C	G	148657362	2	3	137	1	0	0	0	0	0	0	0	1	222	900	32	5		5	ACVR2A	2	148657362	Silent	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	12129175	148657362	94542011	11	9874											
ASNSD1	54529	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	190535267	190535267	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggaattggtgaaaaattaCttttacgccttgcagctgtg	11	6	0	1	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	ASNSD1	NM_019048	exon6	c.C1747T	p.L583F	AAATTACTTTTAC		253	53	0.21	270	1	0.0037037037		63		179	30	0.17				T	190535267	C	T	190535267	3	4	137	1	0	0	0	0	1	0	0	0	1048	565	20	3	1757	3	ASNSD1	2	190535267	Missense_Mutation	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	41877905	190535267	52664106	12	9875											
FANCD2	2177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	10132048	10132048	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaaaaaattgagcctggCacagcagcagactcgcagca	11	10	0	3	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001018115	exon37	c.C3756T	p.G1252G	GCCTGGCACAGCA		52	27	0.52	56	0	0				151	111	0.74				T	10132048	C	T	10132048	2	4	137	1	0	0	0	0	0	0	0	1	5697	697	25	2		2	FANCD2	3	10132048	Silent	SNP	C	TCGA-YU-A94I-01A-11D-A435-10		10132048	187890382	13	9876											
PARP15	165631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	122296590	122296590	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagagaacttatgcacggaGttgcaggtgttacttccaga	11	9	0	2	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001113523	exon1	c.G76C	p.V26L	CACGGAGTTGCAG		124	81	0.65	113	0	0				1	0	0				C	122296590	G	C	122296590	3	2	137	1	0	0	0	0	1	0	0	0	11505	1029	36	5	78	5	PARP15	3	122296590	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	112164542	122296590	75725840	14	9877											
TTC14	151613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	180320071	180320071	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tggaccgggaccttttgcggCagtcgctaaattgccacggg	14	11	0	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001042601	exon1	c.C22G	p.Q8E	TTGCGGCAGTCGC		56	16	0.29	45	0	0				28	10	0.36				G	180320071	C	G	180320071	3	3	137	1	0	0	0	0	1	0	0	0	16742	711	25	5	24	5	TTC14	3	180320071	Missense_Mutation	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	58023481	180320071	17702359	15	9878											
TP63	8626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr3	189586470	189586470	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	catcagaaagcagcaagtttCggacagtacaaagaacggtg	11	8	1	2	rs147148566	alternate_allele	TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	TP63_ENST00000418709,mucosal,malignant_melanoma,0,6	TP63_ENST00000418709	NM_001114979	exon8	c.C1094A	p.S365X	AAGTTTCGGACAG		131	48	0.37	112	0	0		0	6	0	0					A	189586470	C	A	189586470	4	1	137	1	0	0	0	0	0	1	0	0	16452	893	31	1	1170	1	TP63	3	189586470	Nonsense_Mutation	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	9266399	189586470	8435960	16	9879											
NFXL1	152518	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	47901125	47901125	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgaccatctttggacaaGgagggcagggacctagaatt	13	7	1	2	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	NFXL1	NM_152995	exon7	c.C839T	p.P280L	GGACAAGGAGGGC		76	32	0.42	132	2	0.0151515152		79		33	19	0.58				A	47901125	G	A	47901125	3	1	137	1	0	0	0	0	1	0	0	0	10434	1000	35	3	1964	3	NFXL1	4	47901125	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10		47901125	143253151	17	9880											
CNGA1	1259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	47939764	47939764	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gttggtatcagtgacagaacAtcaagtttaaattgcaagtt	9	5	2	2	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001142564	exon10	c.T954G	p.D318E	CAGAACATCAAGT		109	42	0.39	184	0	0				1	0	0				C	47939764	A	C	47939764	3	2	137	1	0	0	0	0	1	0	0	0	3619	214	8	4	1329	4	CNGA1	4	47939764	Missense_Mutation	SNP	A	TCGA-YU-A94I-01A-11D-A435-10	38639	47939764	143214512	18	9881											
GPM6A	2823	hgsc.bcm.edu	37	chr4	176923708	176923708	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcactgtgggtctcctcccCagaggcccccaccctgcccc	8	21	2	1	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001261447	exon1	c.G34A	p.G12R	CCTCCCCAGAGGC		19	10	0.53	16	0	0				0	0					T	176923708	C	T	176923708	3	4	137	1	0	0	0	0	1	0	0	0	6654	609	21	3		3	GPM6A	4	176923708	Missense_Mutation	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	128983944	176923708	14230568	19	9882											
HSD17B4	3295	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	118809607	118809607	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtttttgcattacagtgaaTgatttgggaggggacttcaa	12	4	1	2	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	HSD17B4	NM_001199291	exon4	c.T192C	p.N64N	AGTGAATGATTTG		80	33	0.41	118	0	0		63		169	86	0.51				C	118809607	T	C	118809607	2	2	137	1	0	0	0	0	0	0	0	1	7426	1461	51	4		4	HSD17B4	5	118809607	Silent	SNP	T	TCGA-YU-A94I-01A-11D-A435-10		118809607	62105653	20	9883											
PCDHB6	56130	mdanderson.org	37	chr5	140531342	140531342	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgcccctctcttccctgGtctccatcaacgcggacaac	6	19	3	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_018939	exon1	c.G1504T	p.V502F	TCCCTGGTCTCCA		34	3	0.09	54	0	0				8	0	0				T	140531342	G	T	140531342	3	4	137	1	0	0	0	0	1	0	0	0	11592	1261	44	3	1506	3	PCDHB6	5	140531342	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	21721735	140531342	40383918	21	9884											
SQSTM1	8878	mdanderson.org	37	chr5	179251214	179251214	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agccgctggctccggaaggtGaaacacggacacttcgggtg	15	11	0	1	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_003900	exon4	c.G564T	p.V188V	GAAGGTGAAACAC		48	4	0.08	99	0	0				355	0	0				T	179251214	G	T	179251214	2	4	137	1	0	0	0	0	0	0	0	1	15185	1277	45	3		3	SQSTM1	5	179251214	Silent	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	38719872	179251214	1664046	22	9885											
FOXQ1	94234	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	1313345	1313345	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatggccatccgcgactcgGcgggcgggcgcttgacgctg	16	15	0	1	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_033260	exon1	c.G406A	p.A136T	GACTCGGCGGGCG		49	18	0.37	55	0	0				55	19	0.35				A	1313345	G	A	1313345	3	1	137	1	0	0	0	0	1	0	0	0	6063	1203	42	2	408	2	FOXQ1	6	1313345	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10		1313345	169801722	23	9886											
SKIV2L	6499	mdanderson.org	37	chr6	31931201	31931201	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcttcaggcggctgaagcGtcgtcagatctatgtgatta	11	8	4	3	rs144001502	alternate_allele	TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_006929	exon14	c.G1415T	p.R472L	TGAAGCGTCGTCA		45	3	0.07	57	0	0				138	0	0				T	31931201	G	T	31931201	3	4	137	1	0	0	0	0	1	0	0	0	14413	1145	40	1	1469	1	SKIV2L	6	31931201	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	30617856	31931201	139183866	24	9887											
TAB2	23118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	149699839	149699839	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gactacttgtcctgcatctaAtcctctgtcacatacctcat	4	14	4	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_015093	exon5	c.A788G	p.N263S	CATCTAATCCTCT		84	15	0.18	127	0	0				113	33	0.29				G	149699839	A	G	149699839	3	3	137	1	0	0	0	0	1	0	0	0	15552	101	4	4	794	4	TAB2	6	149699839	Missense_Mutation	SNP	A	TCGA-YU-A94I-01A-11D-A435-10	117768638	149699839	21415228	25	9888											
AGFG2	3268	mdanderson.org	37	chr7	100137130	100137130	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcgagtgcgcccagcgcgGggtcacctacgtggatatca	13	13	2	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_006076	exon1	c.G161T	p.G54V	AGCGCGGGGTCAC		28	3	0.11	24	0	0				83	0	0				T	100137130	G	T	100137130	3	4	137	1	0	0	0	0	1	0	0	0	378	1232	43	3	163	3	AGFG2	7	100137130	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10		100137130	59001533	26	9889											
KRBA1	84626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	149430318	149430318	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agacccatgagaggctgctcCcccagggcccgcctgagctg	13	16	0	3	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	.	.	.	.	CTGCTCCCCCAGG		82	31	0.38	96	0	0				28	5	0.18				T	149430318	C	T	149430318	3	4	137	1	0	0	0	0	1	0	0	0	8481	623	22	3	2336	3	KRBA1	7	149430318	Missense_Mutation	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	49293188	149430318	9708345	27	9890											
GPR124	25960	mdanderson.org	37	chr8	37687462	37687462	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagctgtcggaacacacGctctgtgcttaccccagtgc	10	15	1	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_032777	exon6	c.G648T	p.T216T	ACACACGCTCTGT		31	3	0.1	52	0	0				34	0	0				T	37687462	G	T	37687462	2	4	137	1	0	0	0	0	0	0	0	1	6677	1074	38	1		1	GPR124	8	37687462	Silent	SNP	G	TCGA-YU-A94I-01A-11D-A435-10		37687462	108676560	28	9891											
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu	37	chr8	77767796	77767797	+	In_Frame_Ins	INS	-	-	CGACCA													catttcaatgacaaagatggINScgaccacgaccaaagctttt					novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	ZFHX4	NM_024721	exon10	c.8639_8640insCGACCA	p.G2880delinsGDH	AAGATGGCGACCA		65	15	0.23	95	0	0		878		0	0					CGACCA	77767797	-	CGACCA	77767796	7	5	137	1	0	1	1	0	0	0	0	0	17692	1203	42	0	8673	0	ZFHX4	8	77767796	In_Frame_Ins	INS	-	TCGA-YU-A94I-01A-11D-A435-10	40080334	77767796	68596226	29	9892											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	113308062	113308062	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttgccatgcttacttacGcacacaggatgggagctgac	10	11	0	1	rs199825870	by1000genomes;alternate_allele	TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_198123	exon54	c.C8614A	p.P2872T	ACTTACGCACACA		82	29	0.35	146	0	0				2	2	1				T	113308062	G	T	113308062	3	4	137	1	0	0	0	0	1	0	0	0	3971	1101	38	1	2581	1	CSMD3	8	113308062	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	35540266	113308062	33055960	30	9893											
EEF1D	1936	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	144663434	144663434	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggttctccacttccagactgGcaatccggacgacgagctca	10	14	2	1	rs11548168	alternate_allele	TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	EEF1D	NM_001130053	exon6	c.C1352G	p.A451G	AGACTGGCAATCC		40	12	0.3	68	0	0		48		959	406	0.42				C	144663434	G	C	144663434	3	2	137	1	0	0	0	0	1	0	0	0	4952	1203	42	5	611	5	EEF1D	8	144663434	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	31355372	144663434	1700588	31	9894											
PLEC	5339	broad.mit.edu	37	chr8	144999684	144999684	+	Frame_Shift_Del	DEL	A	A	-													agtgcctgcagctccccctcAgccccgccacgctggcgctc					novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	PLEC	NM_201380	exon31	c.4824delT	p.A1608fs	CCCCTCAGCCCCG		6	2	0.33	8	0	0		1144		43	0	0				-	144999684	A	-	144999684	7	5	137	1	0	1	0	1	0	0	0	0	12099	175	7	0	9238	0	PLEC	8	144999684	Frame_Shift_Del	DEL	A	TCGA-YU-A94I-01A-11D-A435-10	336250	144999684	1364338	32	9895											
ZNF16	7564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	146156383	146156383	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaggtgtagggtttttccCcagtatgaactttctggtgg	12	8	1	1	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_006958	exon3	c.G1790A	p.G597E	TTTTCCCCAGTAT		60	29	0.48	90	0	0				25	15	0.6				T	146156383	C	T	146156383	3	4	137	1	0	0	0	0	1	0	0	0	17795	623	22	3	262	3	ZNF16	8	146156383	Missense_Mutation	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	1156699	146156383	207639	33	9896											
TLR4	7099	broad.mit.edu	37	chr9	120475855	120475855	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aaaatggctggcaattctttCcaggaaaacttccttccaga	7	10	1	1	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	TLR4,NS,carcinoma,0,1	TLR4	NM_138554	exon3	c.C1449T	p.F483F	TTCTTTCCAGGAA		101	7	0.07	155	7	0.0451612903		220	1	5	0	0				T	120475855	C	T	120475855	2	4	137	1	0	0	0	0	0	0	0	1	16012	854	30	3		3	TLR4	9	120475855	Silent	SNP	C	TCGA-YU-A94I-01A-11D-A435-10		120475855	20737576	34	9897											
PIP5KL1	138429	mdanderson.org	37	chr9	130692122	130692122	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaagcccccgccggctggAggtgactgctctgcatccag	14	14	1	2	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001135219	exon2	c.T73C	p.S25P	GGCTGGAGGTGAC		23	2	0.09	39	0	0				0	0					G	130692122	A	G	130692122	3	3	137	1	0	0	0	0	1	0	0	0	11989	304	11	4	1147	4	PIP5KL1	9	130692122	Missense_Mutation	SNP	A	TCGA-YU-A94I-01A-11D-A435-10	10216267	130692122	10521309	35	9898											
C9orf173	441476	hgsc.bcm.edu	37	chr9	140145760	140145760	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatgaattctgaccagaagGcagtgaaattcctggcaaat	10	7	1	5	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001256701	exon1	c.G22T	p.A8S	CAGAAGGCAGTGA		98	4	0.04	128	0	0				23	0	0				T	140145760	G	T	140145760	3	4	137	1	0	0	0	0	1	0	0	0	2490	1203	42	2	24	2	C9orf173	9	140145760	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	9453638	140145760	1067671	36	9899											
LARP4B	23185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	859126	859126	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tttactcgttctctgacaaaTctctgcgtagctgggctttc	8	11	2	1	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_015155	exon18	c.A1957T	p.I653F	GACAAATCTCTGC		145	64	0.44	140	0	0				228	134	0.59				A	859126	T	A	859126	3	1	137	1	0	0	0	0	1	0	0	0	8669	1435	50	5	263	5	LARP4B	10	859126	Missense_Mutation	SNP	T	TCGA-YU-A94I-01A-11D-A435-10		859126	134675621	37	9900											
HERC4	26091	mdanderson.org	37	chr10	69699401	69699401	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctggataatccagtaactGttgcatgcttctgcaaaata	7	8	2	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_022079	exon22	c.C2539A	p.Q847K	GTAACTGTTGCAT		109	5	0.05	90	0	0				45	0	0				T	69699401	G	T	69699401	3	4	137	1	0	0	0	0	1	0	0	0	7100	1386	48	3	654	3	HERC4	10	69699401	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	68840275	69699401	65835346	38	9901											
CDHR5	53841	broad.mit.edu	37	chr11	617401	617402	+	Frame_Shift_Ins	INS	-	-	C													tcgtagggacccccacccctINSccccgcgccctcgccctcat					novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	CDHR5	NM_021924	exon15	c.2488_2489insG	p.R830fs	CACCCCTCCCCGC		83	6	0.07	80	0	0		77		9	0	0				C	617402	-	C	617401	7	5	137	1	0	1	1	0	0	0	0	0	3144	1550	54	0	53	0	CDHR5	11	617401	Frame_Shift_Ins	INS	-	TCGA-YU-A94I-01A-11D-A435-10		617401	134389115	39	9902											
MUC2	4583	mdanderson.org	37	chr11	1092971	1092971	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacggtgaccccaaccccaaCacccaccggcacacagaccc	6	21	0	2	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	MUC2_ENST00000441003,NS,carcinoma,0,1	MUC2_ENST00000441003	NM_002457	exon30	c.C4790T	p.T1597I	CCCCAACACCCAC		25	2	0.08	34	2	0.0588235294		0	1	0	0					T	1092971	C	T	1092971	3	4	137	1	0	0	0	0	1	0	0	0	10022	478	17	3	4908	3	MUC2	11	1092971	Missense_Mutation	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	475570	1092971	133913545	40	9903											
DCHS1	8642	broad.mit.edu	37	chr11	6662633	6662633	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acatgagaggagctgccgtgCctgccggaagccccgcactg	14	14	0	1	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	DCHS1	NM_003737	exon2	c.G212A	p.G71D	GCCGTGCCTGCCG		49	3	0.06	48	0	0		277		14	0	0				T	6662633	C	T	6662633	3	4	137	1	0	0	0	0	1	0	0	0	4310	739	26	2	9764	2	DCHS1	11	6662633	Missense_Mutation	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	5569662	6662633	128343883	41	9904											
TPH1	7166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	18057536	18057536	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	caaagtaaaattatctggtaGattcacagagagaacattgg	9	5	2	3	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	TPH1,NS,carcinoma,+2,1	TPH1	NM_004179	exon2	c.C271A	p.L91I	CTGGTAGATTCAC		94	28	0.3	115	0	0		2	1	2	1	0.5				T	18057536	G	T	18057536	3	4	137	1	0	0	0	0	1	0	0	0	16461	933	33	3	1099	3	TPH1	11	18057536	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	11394903	18057536	116948980	42	9905											
TPH1	7166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	18057614	18057614	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctctgttgatgtcacagtCaacaaaaatctcaaattctg	5	9	5	1	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_004179	exon2	c.G193C	p.D65H	CACAGTCAACAAA		123	32	0.26	134	0	0				1	0	0				G	18057614	C	G	18057614	3	3	137	1	0	0	0	0	1	0	0	0	16461	826	29	5	1177	5	TPH1	11	18057614	Missense_Mutation	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	78	18057614	116948902	43	9906											
SLC43A1	8501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	57281542	57281542	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcacagccgtgcaggccaTccaccagcgcctccggtacg	11	18	0	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001198810	exon2	c.A43T	p.M15L	AGGCCATCCACCA		33	13	0.39	45	0	0				13	3	0.23				A	57281542	T	A	57281542	3	1	137	1	0	0	0	0	1	0	0	0	14686	1435	50	5	1692	5	SLC43A1	11	57281542	Missense_Mutation	SNP	T	TCGA-YU-A94I-01A-11D-A435-10	39223928	57281542	77724974	44	9907											
SYVN1	84447	mdanderson.org	37	chr11	64897841	64897841	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggaaaaggaggcaggagGccctgggggactgcagagag	21	6	0	1	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_032431	exon12	c.C1116A	p.G372G	CAGGAGGCCCTGG		52	3	0.06	57	0	0				65	0	0				T	64897841	G	T	64897841	2	4	137	1	0	0	0	0	0	0	0	1	15543	1190	42	2		2	SYVN1	11	64897841	Silent	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	7616299	64897841	70108675	45	9908											
DPP3	10072	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr11	66260275	66260275	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgaaggagctgccctgGcccccaacctttgagaagga	12	13	0	2	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	DPP3	NM_130443	exon10	c.G1077A	p.W359X	GCCCTGGCCCCCA		107	81	0.76	110	1	0.0090909091		61		84	16	0.19				A	66260275	G	A	66260275	4	1	137	1	0	0	0	0	0	1	0	0	4754	1212	42	2	1111	2	DPP3	11	66260275	Nonsense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	1362434	66260275	68746241	46	9909											
CCDC87	55231	mdanderson.org	37	chr11	66358257	66358257	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggttgggattggaagcttGtccctcaaaccactctagtc	11	11	2	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_018219	exon1	c.C2230A	p.Q744K	AAGCTTGTCCCTC		40	3	0.08	50	0	0				4	0	0				T	66358257	G	T	66358257	3	4	137	1	0	0	0	0	1	0	0	0	2882	1386	48	3	323	3	CCDC87	11	66358257	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	97982	66358257	68648259	47	9910											
TSKU	25987	mdanderson.org	37	chr11	76506691	76506691	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgctgctgctgctggccGtgagtggggcccagacaacc	14	15	0	2	rs202220235	bycluster;alternate_allele	TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_015516	exon2	c.G31T	p.V11L	CTGGCCGTGAGTG		48	3	0.06	45	0	0				235	0	0				T	76506691	G	T	76506691	3	4	137	1	0	0	0	0	1	0	0	0	16687	1145	40	1	33	1	TSKU	11	76506691	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	10148434	76506691	58499825	48	9911											
ROBO3	64221	mdanderson.org	37	chr11	124745971	124745971	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgaaccctggtcgcggcggCcaccagcgcaggcgtgggcg	17	15	0	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_022370	exon16	c.C2543T	p.A848V	CGGCGGCCACCAG		47	3	0.06	58	0	0				11	0	0				T	124745971	C	T	124745971	3	4	137	1	0	0	0	0	1	0	0	0	13566	739	26	2	2605	2	ROBO3	11	124745971	Missense_Mutation	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	48239280	124745971	10260545	49	9912											
GPR162	27239	broad.mit.edu	37	chr12	6933730	6933730	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccggagagtggggggtggTggggggaccaaagcgggtgg	25	6	0	1	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	GPR162	NM_019858	exon2	c.T666G	p.G222G	GGGTGGTGGGGGG		83	13	0.16	63	6	0.0952380952		55		2	0	0				G	6933730	T	G	6933730	2	3	137	1	0	0	0	0	0	0	0	1	6705	1683	59	4		4	GPR162	12	6933730	Silent	SNP	T	TCGA-YU-A94I-01A-11D-A435-10		6933730	126918165	50	9913											
EIF4B	1975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	53410339	53410339	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtactggtggaggaagcacCtatgtttccaaaccagtcag	12	9	1	0	rs373400973		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001417	exon2	c.C96G	p.T32T	AAGCACCTATGTT		75	17	0.23	60	0	0				410	124	0.3				G	53410339	C	G	53410339	2	3	137	1	0	0	0	0	0	0	0	1	5055	668	24	5		5	EIF4B	12	53410339	Silent	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	46476609	53410339	80441556	51	9914											
PA2G4	5036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	56505268	56505268	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cctgttttccaggccctcctCcagagttctgcaagtcgaaa	8	14	1	1	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_006191	exon12	c.C1074T	p.L358L	CCTCCTCCAGAGT		214	64	0.3	226	0	0				664	196	0.3				T	56505268	C	T	56505268	2	4	137	1	0	0	0	0	0	0	0	1	11407	842	30	3		3	PA2G4	12	56505268	Silent	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	3094929	56505268	77346627	52	9915											
SYCP3	50511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	102125386	102125386	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	actgtttaattgttttcaatCtctggctctgaacaattcta	5	8	4	1	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001177949	exon7	c.G512A	p.R171K	TTCAATCTCTGGC		55	16	0.29	74	0	0				0	0					T	102125386	C	T	102125386	3	4	137	1	0	0	0	0	1	0	0	0	15490	913	32	3	210	3	SYCP3	12	102125386	Missense_Mutation	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	45620118	102125386	31726509	53	9916											
FRY	10129	mdanderson.org	37	chr13	32776178	32776178	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccatgcagctcatgcagGcacgtatcatttactggcat	8	12	3	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_023037	exon30	c.3846+1G>T	.	ATGCAGGCACGTA		49	3	0.06	72	0	0				0	0					T	32776178	G	T	32776178	5	4	137	1	0	0	0	0	0	0	1	0	6097	1217	42	2	3965	2	FRY	13	32776178	Splice_Site	SNP	G	TCGA-YU-A94I-01A-11D-A435-10		32776178	82393700	54	9917											
TFDP1	7027	mdanderson.org	37	chr13	114294482	114294482	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gctggccacaagctccaatgGgtctcagtacagcggctcca	11	14	1	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_007111	exon12	c.G1133C	p.G378A	CCAATGGGTCTCA		24	2	0.08	57	0	0				388	0	0				C	114294482	G	C	114294482	3	2	137	1	0	0	0	0	1	0	0	0	15856	1232	43	5	1175	5	TFDP1	13	114294482	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	81518304	114294482	875396	55	9918											
HECTD1	25831	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	31576895	31576897	+	In_Frame_Del	DEL	CTC	CTC	-													tcccaagccagttccttcttCtcctaaaaattcaacctaaa					novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	CTC	CTC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	HECTD1	NM_015382	exon37	c.6495_6497del	p.2165_2166del	CTTCTTCTCCTAA		78	17	0.22	120	0	0		159		103	0	0				-	31576897	CTC	-	31576895	7	5	137	1	0	1	0	1	0	0	0	0	7079	922	32	0	1364	0	HECTD1	14	31576895	In_Frame_Del	DEL	CTC	TCGA-YU-A94I-01A-11D-A435-10		31576895	75772645	56	9919											
SIX4	51804	mdanderson.org	37	chr14	61190366	61190366	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaggctctcgttgccacGtagcaggtcgctctggggca	14	13	2	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_017420	exon1	c.C427A	p.R143S	TGCCACGTAGCAG		49	3	0.06	69	0	0				0	0					T	61190366	G	T	61190366	3	4	137	1	0	0	0	0	1	0	0	0	14403	1145	40	1	1930	1	SIX4	14	61190366	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	29613471	61190366	46159174	57	9920											
C14orf159	80017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	91642295	91642295	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cagaactgttgggaatcaaaGagctttccaaacctgcctac	8	11	1	2	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001102368	exon7	c.G625A	p.E209K	ATCAAAGAGCTTT		96	13	0.14	119	0	0				18	1	0.06				A	91642295	G	A	91642295	3	1	137	1	0	0	0	0	1	0	0	0	1761	943	33	3	643	3	C14orf159	14	91642295	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	30451929	91642295	15707245	58	9921											
DICER1	23405	mdanderson.org	37	chr14	95579466	95579466	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggtgagttaattggcagaTaaagagttgaataaaatgta	12	1	0	4	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001271282	exon12	c.A2003G	p.Y668C	GGCAGATAAAGAG		93	4	0.04	101	0	0				79	3	0.04				C	95579466	T	C	95579466	3	2	137	1	0	0	0	0	1	0	0	0	4549	1406	49	4	3829	4	DICER1	14	95579466	Missense_Mutation	SNP	T	TCGA-YU-A94I-01A-11D-A435-10	3937171	95579466	11770074	59	9922											
AK7	122481	broad.mit.edu;mdanderson.org	37	chr14	96858506	96858506	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaccatggctgaagaagaGgaaactgctgctctcacgga	11	12	1	3	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	AK7	NM_152327	exon1	c.G15A	p.E5E	AGAAGAGGAAACT		55	5	0.09	63	0	0		69		11	1	0.09				A	96858506	G	A	96858506	2	1	137	1	0	0	0	0	0	0	0	1	441	991	35	3		3	AK7	14	96858506	Silent	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	1279040	96858506	10491034	60	9923											
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	42156128	42156128	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttgttgagctggcttcgcCgctggcagatgatcttgact	13	9	1	4	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_016642	exon40	c.G6908A	p.R2303Q	CTTCGCCGCTGGC		39	6	0.15	54	0	0				10	2	0.2				T	42156128	C	T	42156128	3	4	137	1	0	0	0	0	1	0	0	0	15177	652	23	1	4127	1	SPTBN5	15	42156128	Missense_Mutation	SNP	C	TCGA-YU-A94I-01A-11D-A435-10		42156128	60375264	61	9924											
HERC1	8925	broad.mit.edu;mdanderson.org	37	chr15	64019909	64019909	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctggcaggagtctattaaGgcaatcaagaggtggcaaca	13	7	2	1	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	HERC1	NM_003922	exon17	c.C3283A	p.L1095I	TATTAAGGCAATC		138	5	0.04	239	0	0		624		5	0	0				T	64019909	G	T	64019909	3	4	137	1	0	0	0	0	1	0	0	0	7097	1000	35	3	11550	3	HERC1	15	64019909	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	21863781	64019909	38511483	62	9925											
STRA6	64220	mdanderson.org	37	chr15	74488353	74488353	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggtcagtgggtaccttgGctgggtgctgaggcgagagt	21	6	1	2	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001199042	exon5	c.C519A	p.S173R	ACCTTGGCTGGGT		44	3	0.07	61	0	0				23	0	0				T	74488353	G	T	74488353	3	4	137	1	0	0	0	0	1	0	0	0	15377	1194	42	2	1711	2	STRA6	15	74488353	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	10468444	74488353	28043039	63	9926											
CACNA1H	8912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	1254228	1254228	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tccggcacggtgaccgctggGaccccacgcgaccaccccgt	12	19	0	1	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_021098	exon10	c.G2221A	p.D741N	CGCTGGGACCCCA		80	24	0.3	100	0	0				2	1	0.5				A	1254228	G	A	1254228	3	1	137	1	0	0	0	0	1	0	0	0	2563	1174	41	3	2255	3	CACNA1H	16	1254228	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10		1254228	89100525	64	9927											
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	3900553	3900554	+	Frame_Shift_Del	DEL	AA	AA	-													aggcctgggtgggtctggttAaagttagcattcatgcagat					novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	AA	AA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	CREBBP	NM_001079846	exon2	c.543_544del	p.181_182del	CTGGTTAAAGTTA		62	17	0.27	82	0	0		546		76	0	0				-	3900554	AA	-	3900553	7	5	137	1	0	1	0	1	0	0	0	0	3884	359	13	0	6905	0	CREBBP	16	3900553	Frame_Shift_Del	DEL	AA	TCGA-YU-A94I-01A-11D-A435-10	2646325	3900553	86454200	65	9928											
CDR2	1039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	22376333	22376333	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aagctcagcagcaagttgaaGatctagcacaacaaatgaat	8	8	2	3	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001802	exon2	c.C82T	p.L28F	GTTGAAGATCTAG		83	36	0.43	84	0	0				48	26	0.54				A	22376333	G	A	22376333	3	1	137	1	0	0	0	0	1	0	0	0	3194	942	33	3	1298	3	CDR2	16	22376333	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	18475780	22376333	67978420	66	9929											
HERPUD1	9709	mdanderson.org	37	chr16	56973165	56973165	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ataggcctgaagctgcccagCaggcattccaaggcctgggt	13	12	0	1	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_014685	exon5	c.C448A	p.Q150K	GCCCAGCAGGCAT		44	3	0.07	68	0	0				93	0	0				A	56973165	C	A	56973165	3	1	137	1	0	0	0	0	1	0	0	0	7103	711	25	2	466	2	HERPUD1	16	56973165	Missense_Mutation	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	34596832	56973165	33381588	67	9930											
NEURL4	84461	mdanderson.org	37	chr17	7224486	7224486	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cgccctcactgccggtgtctGaactgggggaaggaggctgg	17	11	2	1	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_032442	exon20	c.C3305A	p.S1102X	GTGTCTGAACTGG		51	3	0.06	66	0	0				143	0	0				T	7224486	G	T	7224486	4	4	137	1	0	0	0	0	0	1	0	0	10393	1294	45	3	1423	3	NEURL4	17	7224486	Nonsense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10		7224486	73970724	68	9931											
TRIM16	10626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	15532122	15532122	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggaaaggatccctcccgggAagtcgatatagaccccgagc	12	12	0	1	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_006470	exon9	c.T1502A	p.F501Y	CCCGGGAAGTCGA		166	49	0.3	169	0	0				35	11	0.31				T	15532122	A	T	15532122	3	4	137	1	0	0	0	0	1	0	0	0	16551	246	9	5	196	5	TRIM16	17	15532122	Missense_Mutation	SNP	A	TCGA-YU-A94I-01A-11D-A435-10	8307636	15532122	65663088	69	9932											
KRT9	3857	broad.mit.edu	37	chr17	39728194	39728194	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcccaggccgcccccgccAcccccgccgctgcggctcaa	10	24	1	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	KRT9	NM_000226	exon1	c.T51G	p.G17G	CCCGCCACCCCCG		29	15	0.52	41	6	0.1463414634		78		0	0					C	39728194	A	C	39728194	2	2	137	1	0	0	0	0	0	0	0	1	8543	146	6	4		4	KRT9	17	39728194	Silent	SNP	A	TCGA-YU-A94I-01A-11D-A435-10	24196072	39728194	41467016	70	9933											
PPM1D	8493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr17	58740737	58740737	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaattctggccccctgatgAagaagcatagacgaaatggc	10	11	1	4	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_003620	exon6	c.A1642T	p.K548X	CTGATGAAGAAGC		84	26	0.31	109	0	0				44	16	0.36				T	58740737	A	T	58740737	4	4	137	1	0	0	0	0	0	1	0	0	12385	247	9	5	1664	5	PPM1D	17	58740737	Nonsense_Mutation	SNP	A	TCGA-YU-A94I-01A-11D-A435-10	19012543	58740737	22454473	71	9934											
FTSJ3	117246	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	61898885	61898886	+	Frame_Shift_Del	DEL	TG	TG	-													tcaaacaggaagggggtgtcTgtggcagctgctgcttctgc					novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	TG	TG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	FTSJ3	NM_017647	exon16	c.1715_1716del	p.572_572del	GGTGTCTGTGGCA		64	0	0	75	0	0		63		128	0	0				-	61898886	TG	-	61898885	7	5	137	1	0	1	0	1	0	0	0	0	6123	1580	55	0	852	0	FTSJ3	17	61898885	Frame_Shift_Del	DEL	TG	TCGA-YU-A94I-01A-11D-A435-10	3158148	61898885	19296325	72	9935											
QRICH2	84074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	74288014	74288014	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggataggcaccaggttgtaCcaggccatgtggatctgcct	13	10	1	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_032134	exon4	c.G2296A	p.V766I	GTTGTACCAGGCC		117	13	0.11	102	0	0				5	0	0				T	74288014	C	T	74288014	3	4	137	1	0	0	0	0	1	0	0	0	12931	507	18	3	2759	3	QRICH2	17	74288014	Missense_Mutation	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	12389129	74288014	6907196	73	9936											
EMILIN2	84034	mdanderson.org	37	chr18	2913083	2913083	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggggtcttcacggctccttAtgatgggcgctacctgatca	12	11	3	2	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_032048	exon8	c.A2843G	p.Y948C	CTCCTTATGATGG		20	3	0.15	52	1	0.0192307692				56	1	0.02				G	2913083	A	G	2913083	3	3	137	1	0	0	0	0	1	0	0	0	5122	449	16	4	2873	4	EMILIN2	18	2913083	Missense_Mutation	SNP	A	TCGA-YU-A94I-01A-11D-A435-10		2913083	75164165	74	9937											
MUC16	94025	mdanderson.org	37	chr19	9024140	9024140	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactgatacttacttgtggGgctggagagggaggatggag	18	4	0	3	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_024690	exon18	c.C37132A	p.P12378T	TTGTGGGGCTGGA		57	3	0.05	118	0	0				0	0					T	9024140	G	T	9024140	3	4	137	1	0	0	0	0	1	0	0	0	10020	1232	43	3	6659	3	MUC16	19	9024140	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10		9024140	50104843	75	9938											
C19orf66	55337	mdanderson.org	37	chr19	10200662	10200662	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttatccctgctgtggaccGgcagtttgcctgctcctcct	9	16	0	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_018381	exon5	c.G323T	p.R108L	TGGACCGGCAGTT		54	3	0.06	106	0	0				11	0	0				T	10200662	G	T	10200662	3	4	137	1	0	0	0	0	1	0	0	0	1958	1116	39	1	341	1	C19orf66	19	10200662	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	1176522	10200662	48928321	76	9939											
PRKCSH	5589	hgsc.bcm.edu	37	chr19	11558370	11558370	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggaggaggaggaggaGgaagaagaggctgaagaaga	22	1	0	5	rs77563879	bycluster	TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	PRKCSH,caecum,carcinoma,0,1	PRKCSH	NM_001001329	exon11	c.G966A	p.E322E	GGAGGAGGAAGAA		45	4	0.09	52	0	0		0	1	132	0	0				A	11558370	G	A	11558370	2	1	137	1	0	0	0	0	0	0	0	1	12567	991	35	3		3	PRKCSH	19	11558370	Silent	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	1357708	11558370	47570613	77	9940											
KCTD15	79047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	34292141	34292141	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctggctgcccagggcatcCccctgccagcccagctcacc	9	22	1	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001129995	exon4	c.C136A	p.P46T	GGCATCCCCCTGC		46	13	0.28	65	0	0				166	53	0.32				A	34292141	C	A	34292141	3	1	137	1	0	0	0	0	1	0	0	0	8145	623	22	3	142	3	KCTD15	19	34292141	Missense_Mutation	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	22733771	34292141	24836842	78	9941											
LRFN3	79414	broad.mit.edu;mdanderson.org	37	chr19	36435792	36435792	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagcgtttgctcccagacCaacggcgccctgggccccac	11	18	0	1	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	LRFN3	NM_024509	exon3	c.C1758T	p.T586T	CCAGACCAACGGC		11	4	0.36	13	0	0		43		14	4	0.29				T	36435792	C	T	36435792	2	4	137	1	0	0	0	0	0	0	0	1	8983	581	21	3		3	LRFN3	19	36435792	Silent	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	2143651	36435792	22693191	79	9942											
STRN4	29888	mdanderson.org	37	chr19	47232034	47232034	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caccagagccttggatgggaGctggcacatggagaaagcca	14	10	0	2	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_001039877	exon7	c.C880A	p.L294I	ATGGGAGCTGGCA		54	3	0.06	60	0	0				452	0	0				T	47232034	G	T	47232034	3	4	137	1	0	0	0	0	1	0	0	0	15386	985	34	2	1446	2	STRN4	19	47232034	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	10796242	47232034	11896949	80	9943											
FUZ	80199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	50312451	50312451	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actggctgaggggtgggctcGgcccgcagagtagacacagc	17	11	0	3	rs376948728	alternate_allele	TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_025129	exon7	c.C755A	p.P252Q	GGGCTCGGCCCGC		67	18	0.27	115	0	0				83	31	0.37				T	50312451	G	T	50312451	3	4	137	1	0	0	0	0	1	0	0	0	6146	1116	39	1	521	1	FUZ	19	50312451	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	3080417	50312451	8816532	81	9944											
SYT3	84258	mdanderson.org	37	chr19	51135704	51135704	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagcggccactgctgctgcTgcagcctctggatacgagtc	12	15	1	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_032298	exon2	c.A513T	p.A171A	TGCTGCTGCAGCC		39	3	0.08	70	0	0				0	0					A	51135704	T	A	51135704	2	1	137	1	0	0	0	0	0	0	0	1	15531	1567	55	5		5	SYT3	19	51135704	Silent	SNP	T	TCGA-YU-A94I-01A-11D-A435-10	823253	51135704	7993279	82	9945											
CRNKL1	51340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	20033204	20033204	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtcctccttgcggcagcgcGtggagtgcggcgtcctggag	17	13	0	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_016652	exon2	c.C266T	p.T89M	CAGCGCGTGGAGT		56	20	0.36	63	0	0				0	0					A	20033204	G	A	20033204	3	1	137	1	0	0	0	0	1	0	0	0	3914	1145	40	1	2336	1	CRNKL1	20	20033204	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10		20033204	42992316	83	9946											
ZFP64	55734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr20	50769116	50769116	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggcgcaggatctgcagccGgctgttccctgggagttcct	14	13	1	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_018197	exon6	c.C1615T	p.R539W	GCAGCCGGCTGTT		21	7	0.33	14	0	0				58	22	0.38				A	50769116	G	A	50769116	3	1	137	1	0	0	0	0	1	0	0	0	17709	1115	39	1	1625	1	ZFP64	20	50769116	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	30735912	50769116	12256404	84	9947											
BAGE2	85319	bcgsc.ca	37	chr21	11058295	11058295	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcacagcatttgatagtgGctccaaagtgcttacaaaat	7	9	1	1	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_182482	exon3	c.C145T	p.P49S	ATAGTGGCTCCAA		219	10	0.05	271	3	0.0110701107				0	0					A	11058295	G	A	11058295	1	1	137	0	1	0	0	0	0	0	0	0	1290	1203	42	2		2	BAGE2	21	11058295	RNA	SNP	G	TCGA-YU-A94I-01A-11D-A435-10		11058295	37071600	85	9948											
SYNJ1	8867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	34050984	34050984	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ttccagtagttaaaagtgctCgagctttgtcagctaaatca	8	8	2	0	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	SYNJ1,rectum,carcinoma,-1,1	SYNJ1	NM_203446	exon12	c.G1598A	p.R533Q	AGTGCTCGAGCTT		171	34	0.2	184	0	0		-1	1	10	2	0.2				T	34050984	C	T	34050984	3	4	137	1	0	0	0	0	1	0	0	0	15508	884	31	1	3349	1	SYNJ1	21	34050984	Missense_Mutation	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	22992689	34050984	14078911	86	9949											
YWHAH	7533	mdanderson.org	37	chr22	32352743	32352743	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacctcaccctctggacgagCgaccagcaggatgaagaagc	11	13	2	2	rs377641891		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_003405	exon2	c.C705T	p.S235S	GACGAGCGACCAG		46	3	0.07	58	0	0				542	0	0				T	32352743	C	T	32352743	2	4	137	1	0	0	0	0	0	0	0	1	17563	767	27	1		1	YWHAH	22	32352743	Silent	SNP	C	TCGA-YU-A94I-01A-11D-A435-10		32352743	18951823	87	9950											
MEI1	150365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	42126573	42126573	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cagtgaagtgctcgtctggtCcagctgtaactgcttgacac	11	11	1	2	rs374534859		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_152513	exon9	c.C1028T	p.S343F	TCTGGTCCAGCTG		95	87	0.92	129	1	0.007751938				0	0					T	42126573	C	T	42126573	3	4	137	1	0	0	0	0	1	0	0	0	9514	855	30	3	1062	3	MEI1	22	42126573	Missense_Mutation	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	9773830	42126573	9177993	88	9951											
TUBGCP6	85378	mdanderson.org	37	chr22	50659727	50659727	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaaagagccgctctgtggGctggctgctcccctcctcca	10	18	1	1	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_020461	exon16	c.C3061A	p.P1021T	CTGTGGGCTGGCT		46	5	0.11	69	0	0				53	0	0				T	50659727	G	T	50659727	3	4	137	1	0	0	0	0	1	0	0	0	16831	1203	42	2	2438	2	TUBGCP6	22	50659727	Missense_Mutation	SNP	G	TCGA-YU-A94I-01A-11D-A435-10	8533154	50659727	644839	89	9952											
POLA1	5422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	24751914	24751914	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tatttttccatatgctttcaAagaagtcattgagaaaaagg	7	5	2	2	novel		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_016937	exon17	c.A1796G	p.K599R	CTTTCAAAGAAGT		527	242	0.46	475	1	0.0021052632				21	17	0.81				G	24751914	A	G	24751914	3	3	137	1	0	0	0	0	1	0	0	0	12234	14	1	4	1862	4	POLA1	23	24751914	Missense_Mutation	SNP	A	TCGA-YU-A94I-01A-11D-A435-10		24751914	130518646	90	9953											
TAF9B	51616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	77393365	77393365	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtttgatttttctgccttgCgatatccagtaaaaacttaa	7	7	1	1	rs372088655		TCGA-YU-A94I-01A-11D-A435-10	TCGA-YU-A94I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7f459a1b-ea13-4396-89b1-50daa8059835	713aeca6-9e16-4d10-8691-0227db471977	.	.	NM_015975	exon4	c.G286A	p.A96T	GCCTTGCGATATC		314	138	0.44	295	0	0				149	39	0.26				T	77393365	C	T	77393365	3	4	137	1	0	0	0	0	1	0	0	0	15592	768	27	1	485	1	TAF9B	23	77393365	Missense_Mutation	SNP	C	TCGA-YU-A94I-01A-11D-A435-10	52641451	77393365	77877195	91	9954											
TAS1R3	83756	hgsc.bcm.edu	37	chr1	1269674	1269674	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccgccgtgcagatgggcGccctcctgctctgtgtcctg	14	16	1	1	rs147583678		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_152228	exon6	c.G2389T	p.A797S	ATGGGCGCCCTCC		69	4	0.06	91	0	0				0	0					T	1269674	G	T	1269674	3	4	138	1	0	0	0	0	1	0	0	0	15620	1087	38	1	2411	1	TAS1R3	1	1269674	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10		1269674	247980947	1	9955											
PLCH2	9651	mdanderson.org	37	chr1	2418772	2418772	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtcccagtcacgggtggaCatgtatgcttgggtcctgca	13	10	1	0	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_014638	exon7	c.C1071T	p.D357D	GGTGGACATGTAT		39	3	0.08	62	0	0				0	0					T	2418772	C	T	2418772	2	4	138	1	0	0	0	0	0	0	0	1	12085	477	17	3		3	PLCH2	1	2418772	Silent	SNP	C	TCGA-YU-AA4L-01A-11D-A435-10	1149098	2418772	246831849	2	9956											
BSND	7809	mdanderson.org	37	chr1	55470729	55470729	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctgactctgactttcaagGcatcctctccccaaaggcca	7	15	3	2	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_057176	exon2	c.G212A	p.G71D	TTCAAGGCATCCT		42	3	0.07	44	0	0				0	0					A	55470729	G	A	55470729	3	1	138	1	0	0	0	0	1	0	0	0	1533	1203	42	2	218	2	BSND	1	55470729	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	53051957	55470729	193779892	3	9957											
GBP3	2635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	89477486	89477486	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaagagttcttcatatagaCttcagtggcctccctctcac	7	12	4	2	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_018284	exon7	c.G1093A	p.V365I	TATAGACTTCAGT		280	79	0.28	218	0	0				2	0	0				T	89477486	C	T	89477486	3	4	138	1	0	0	0	0	1	0	0	0	6314	565	20	3	714	3	GBP3	1	89477486	Missense_Mutation	SNP	C	TCGA-YU-AA4L-01A-11D-A435-10	34006757	89477486	159773135	4	9958											
DBT	1629	mdanderson.org	37	chr1	100680387	100680387	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcacctttaagaagaaagGcataaaggagagtttaattc	8	6	1	3	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_001918	exon7	c.C925A	p.P309T	AGAAAGGCATAAA		43	3	0.07	32	0	0				10	0	0				T	100680387	G	T	100680387	3	4	138	1	0	0	0	0	1	0	0	0	4282	1203	42	2	543	2	DBT	1	100680387	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	11202901	100680387	148570234	5	9959											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	152283719	152283719	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acgagtttgtctgcttgcacTtctggatcctgactgcccat	9	12	2	1	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	FLG,NS,carcinoma,0,2	FLG	NM_002016	exon3	c.A3643C	p.S1215R	TTGCACTTCTGGA		94	7	0.07	83	0	0		0	2	2	0	0				G	152283719	T	G	152283719	3	3	138	1	0	0	0	0	1	0	0	0	5954	1609	56	4	8546	4	FLG	1	152283719	Missense_Mutation	SNP	T	TCGA-YU-AA4L-01A-11D-A435-10	51603332	152283719	96966902	6	9960											
ZC3H11A	9877	broad.mit.edu	37	chr1	203821424	203821424	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatgattttgagaaactaaTatgggagatttcaggaggca	13	3	1	3	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	ZC3H11A	NM_014827	exon20	c.T2330C	p.I777T	AACTAATATGGGA		265	4	0.02	176	1	0.0056818182		71		106	0	0				C	203821424	T	C	203821424	3	2	138	1	0	0	0	0	1	0	0	0	17618	1406	49	4	2392	4	ZC3H11A	1	203821424	Missense_Mutation	SNP	T	TCGA-YU-AA4L-01A-11D-A435-10	51537705	203821424	45429197	7	9961											
LHCGR	3973	mdanderson.org	37	chr2	48982764	48982764	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggcagcggcggctgcagcAgcagcagcagcttcagcagc	16	13	1	0	rs4539842	bycluster	TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_000233	exon1	c.T47A	p.L16Q	TGCAGCAGCAGCA		12	2	0.17	8	0	0				0	0					T	48982764	A	T	48982764	3	4	138	1	0	0	0	0	1	0	0	0	8801	188	7	5	2096	5	LHCGR	2	48982764	Missense_Mutation	SNP	A	TCGA-YU-AA4L-01A-11D-A435-10		48982764	194216609	8	9962											
SPRED2	200734	mdanderson.org	37	chr2	65541091	65541091	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtctgaggagtccacgtaGgggtagttgtagtcatgctt	14	6	2	1	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_181784	exon6	c.C801A	p.P267P	CACGTAGGGGTAG		28	3	0.11	22	0	0				23	0	0				T	65541091	G	T	65541091	2	4	138	1	0	0	0	0	0	0	0	1	15148	987	35	3		3	SPRED2	2	65541091	Silent	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	16558327	65541091	177658282	9	9963											
ARHGAP25	9938	mdanderson.org	37	chr2	69002529	69002529	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agcagctctactactacaagGatgaagaggacacgaagccc	10	11	1	2	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_001166277	exon2	c.G238T	p.D80Y	TACAAGGATGAAG		46	4	0.09	44	0	0				4	0	0				T	69002529	G	T	69002529	3	4	138	1	0	0	0	0	1	0	0	0	871	1174	41	3	284	3	ARHGAP25	2	69002529	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	3461438	69002529	174196844	10	9964											
UBR3	130507	mdanderson.org	37	chr2	170734086	170734086	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggacttacatatcctgaGgataagcttgtatatggtgt	10	6	1	1	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_172070	exon4	c.G927T	p.E309D	TCCTGAGGATAAG		50	3	0.06	33	0	0				1	0	0				T	170734086	G	T	170734086	3	4	138	1	0	0	0	0	1	0	0	0	16963	991	35	3	941	3	UBR3	2	170734086	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	101731557	170734086	72465287	11	9965											
DLX2	1746	broad.mit.edu	37	chr2	172967030	172967030	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcgcgtagggcgagcccccGccgccgccgccgcccgccgg	16	21	0	0	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	DLX2	NM_004405	exon1	c.C237G	p.G79G	GCCCCCGCCGCCG		80	4	0.05	68	5	0.0735294118		29		0	0					C	172967030	G	C	172967030	2	2	138	1	0	0	0	0	0	0	0	1	4599	1074	38	5		5	DLX2	2	172967030	Silent	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	2232944	172967030	70232343	12	9966											
SLC6A20	54716	mdanderson.org	37	chr3	45814060	45814060	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgtgaggcccctgatgagGtagatgatgagcacgcaata	14	8	0	6	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_020208	exon5	c.C630A	p.Y210X	GATGAGGTAGATG		45	3	0.07	32	0	0				0	0					T	45814060	G	T	45814060	4	4	138	1	0	0	0	0	0	1	0	0	14738	1256	44	3	1176	3	SLC6A20	3	45814060	Nonsense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10		45814060	152208370	13	9967											
RYK	6259	broad.mit.edu	37	chr3	133896871	133896871	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaaggcaatatcaccatggGcttttctccttcttctatac	6	11	4	0	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	RYK	.	.	.	.	CCATGGGCTTTTC		189	6	0.03	154	0	0		37		193	13	0.07	rescued with RNA-seq			A	133896871	G	A	133896871	3	1	138	1	0	0	0	0	1	0	0	0	13818	1203	42	2	624	2	RYK	3	133896871	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	88082811	133896871	64125559	14	9968											
GFM1	85476	mdanderson.org	37	chr3	158363548	158363548	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgagtcctttactacactgGcagaattgcaaagatgcatg	9	9	0	2	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_024996	exon2	c.G212T	p.G71V	ACACTGGCAGAAT		55	3	0.05	32	0	0				12	0	0				T	158363548	G	T	158363548	3	4	138	1	0	0	0	0	1	0	0	0	6382	1203	42	2	218	2	GFM1	3	158363548	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	24466677	158363548	39658882	15	9969											
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	126372841	126372841	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacaggtcctgccaccagttAtttcagtctgagcactgctg	9	13	2	1	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_024582	exon9	c.A10670G	p.Y3557C	CCAGTTATTTCAG		95	31	0.33	102	0	0				0	0					G	126372841	A	G	126372841	3	3	138	1	0	0	0	0	1	0	0	0	5724	449	16	4	10704	4	FAT4	4	126372841	Missense_Mutation	SNP	A	TCGA-YU-AA4L-01A-11D-A435-10		126372841	64781435	16	9970											
MCC	4163	broad.mit.edu;mdanderson.org	37	chr5	112418571	112418571	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcacctattcagccgttcTgtttccacctcaaactctct	3	17	5	0	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	MCC	NM_001085377	exon11	c.A1770C	p.T590T	CCGTTCTGTTTCC		30	5	0.17	38	0	0		234		13	1	0.08				G	112418571	T	G	112418571	2	3	138	1	0	0	0	0	0	0	0	1	9422	1567	55	4		4	MCC	5	112418571	Silent	SNP	T	TCGA-YU-AA4L-01A-11D-A435-10		112418571	68496689	17	9971											
PRR16	51334	mdanderson.org	37	chr5	120021895	120021895	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgacacctgtgaagtgtgaaGaccccaaaagggtggttcca	12	9	0	4	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_016644	exon3	c.G337T	p.D113Y	TGTGAAGACCCCA		35	3	0.09	34	0	0				4	0	0				T	120021895	G	T	120021895	3	4	138	1	0	0	0	0	1	0	0	0	12640	942	33	3	343	3	PRR16	5	120021895	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	7603324	120021895	60893365	18	9972											
SIL1	64374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr5	138283066	138283066	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgatctcgcaccagccctGttcccacaggcctggcagga	11	16	1	1	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_001037633	exon11	c.C1126T	p.Q376X	AGCCCTGTTCCCA		91	9	0.1	149	0	0				71	4	0.06				A	138283066	G	A	138283066	4	1	138	1	0	0	0	0	0	1	0	0	14375	1386	48	3	263	3	SIL1	5	138283066	Nonsense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	18261171	138283066	42632194	19	9973											
FTSJD2	23070	mdanderson.org	37	chr6	37442325	37442325	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagatctacacatgggatgGccgccagtcagaccgctgga	12	13	2	2	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_015050	exon18	c.G1847T	p.G616V	GGGATGGCCGCCA		52	3	0.06	54	0	0				49	0	0				T	37442325	G	T	37442325	3	4	138	1	0	0	0	0	1	0	0	0	6125	1203	42	2	1913	2	FTSJD2	6	37442325	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10		37442325	133672742	20	9974											
NCAPG2	54892	broad.mit.edu	37	chr7	158478886	158478886	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagtattttccctgaagccTttttccaagctctgaaataa	5	11	1	2	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	NCAPG2	NM_017760	exon8	c.A815G	p.K272R	GAAGCCTTTTTCC		317	4	0.01	221	1	0.0045248869		80		37	1	0.03				C	158478886	T	C	158478886	3	2	138	1	0	0	0	0	1	0	0	0	10254	1609	56	4	2700	4	NCAPG2	7	158478886	Missense_Mutation	SNP	T	TCGA-YU-AA4L-01A-11D-A435-10		158478886	659777	21	9975											
TGS1	96764	mdanderson.org	37	chr8	56723593	56723593	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttcctcagcccaccttGgggagggccagactatgcca	12	13	1	1	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_024831	exon11	c.G2297T	p.W766L	CACCTTGGGGAGG		42	3	0.07	31	0	0				48	0	0				T	56723593	G	T	56723593	3	4	138	1	0	0	0	0	1	0	0	0	15896	1357	47	3	2339	3	TGS1	8	56723593	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10		56723593	89640429	22	9976											
PLEC	5339	mdanderson.org	37	chr8	144996006	144996006	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctccgcactcaggatgccGgcctcctgcagcctctgagc	10	18	2	1	rs376058402	alternate_allele	TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_201380	exon32	c.C8394A	p.A2798A	GATGCCGGCCTCC		18	2	0.11	26	0	0				30	0	0				T	144996006	G	T	144996006	2	4	138	1	0	0	0	0	0	0	0	1	12099	1103	39	1		1	PLEC	8	144996006	Silent	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	88272413	144996006	1368016	23	9977											
FOXE1	2304	bcgsc.ca	37	chr9	100616400	100616400	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	atcgccatggccatcgcgcaCgcgcccgagcgccgcctcac	11	20	1	0	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	FOXE1	NM_004473	exon1	c.C204G	p.H68Q	CGCGCACGCGCCC		67	28	0.42	34	1	0.0294117647		19		0	0					G	100616400	C	G	100616400	3	3	138	1	0	0	0	0	1	0	0	0	6036	535	19	5	206	5	FOXE1	9	100616400	Missense_Mutation	SNP	C	TCGA-YU-AA4L-01A-11D-A435-10		100616400	40597031	24	9978											
C9orf43	257169	mdanderson.org	37	chr9	116187328	116187328	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgcgatatcctgaacgtttGaagaaattacataacctgaa	7	8	0	4	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_152786	exon9	c.G837T	p.L279F	ACGTTTGAAGAAA		35	3	0.09	16	0	0				0	0					T	116187328	G	T	116187328	3	4	138	1	0	0	0	0	1	0	0	0	2501	1281	45	3	867	3	C9orf43	9	116187328	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	15570928	116187328	25026103	25	9979											
RASSF4	83937	hgsc.bcm.edu	37	chr10	45486407	45486407	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttttcagagcggacaaaaTtaaaagactgcgagtacccg	9	9	1	2	rs142266476		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	RASSF4,NS,carcinoma,-2,1	RASSF4	NM_032023	exon9	c.T697C	p.L233L	ACAAAATTAAAAG		34	2	0.06	50	0	0	0	-2	1	36	0	0				C	45486407	T	C	45486407	2	2	138	1	0	0	0	0	0	0	0	1	13139	1490	52	4		4	RASSF4	10	45486407	Silent	SNP	T	TCGA-YU-AA4L-01A-11D-A435-10		45486407	90048340	26	9980											
PI4K2A	55361	mdanderson.org	37	chr10	99400832	99400832	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccggaggatcctgagttcgaGgcggtggtgcggcaggccga	19	10	0	1	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_018425	exon1	c.G333C	p.E111D	GTTCGAGGCGGTG		14	2	0.14	11	0	0				4	0	0				C	99400832	G	C	99400832	3	2	138	1	0	0	0	0	1	0	0	0	11918	991	35	5	335	5	PI4K2A	10	99400832	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	53914425	99400832	36133915	27	9981											
ANO5	203859	mdanderson.org	37	chr11	22272376	22272376	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttattggagactaaatagtaCgtgtttggcttcaaaggtat	10	4	1	1	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_213599	exon11	c.C1103T	p.T368M	ATAGTACGTGTTT		52	3	0.06	44	0	0				1	0	0				T	22272376	C	T	22272376	3	4	138	1	0	0	0	0	1	0	0	0	694	536	19	1	1145	1	ANO5	11	22272376	Missense_Mutation	SNP	C	TCGA-YU-AA4L-01A-11D-A435-10		22272376	112734140	28	9982											
TMEM109	79073	mdanderson.org	37	chr11	60689301	60689301	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccaggtccagaccttcctGctgtggggagcaggggccct	16	13	0	1	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_024092	exon4	c.G396T	p.L132L	CTTCCTGCTGTGG		51	3	0.06	48	0	0				45	0	0				T	60689301	G	T	60689301	2	4	138	1	0	0	0	0	0	0	0	1	16084	1306	46	2		2	TMEM109	11	60689301	Silent	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	38416925	60689301	74317215	29	9983											
SART1	9092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	65744158	65744158	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatgaggagcgctcagccaAcggtggctccgaatctgacg	15	11	2	2	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_005146	exon14	c.A1778C	p.N593T	CAGCCAACGGTGG		82	51	0.62	48	0	0				387	257	0.66				C	65744158	A	C	65744158	3	2	138	1	0	0	0	0	1	0	0	0	13898	43	2	4	1832	4	SART1	11	65744158	Missense_Mutation	SNP	A	TCGA-YU-AA4L-01A-11D-A435-10	5054857	65744158	69262358	30	9984											
GPC5	2262	mdanderson.org	37	chr13	92101090	92101090	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggagagatatcagattgCggctcgccaggatatgcagc	15	8	1	2	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_004466	exon2	c.C239T	p.A80V	AGATTGCGGCTCG		51	3	0.06	49	0	0				0	0					T	92101090	C	T	92101090	3	4	138	1	0	0	0	0	1	0	0	0	6640	768	27	1	245	1	GPC5	13	92101090	Missense_Mutation	SNP	C	TCGA-YU-AA4L-01A-11D-A435-10		92101090	23068788	31	9985											
F7	2155	mdanderson.org	37	chr13	113772845	113772845	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacatcgcgctgctccgcctGcaccagcccgtggtcctcac	10	19	1	0	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_000131	exon9	c.G924T	p.L308L	CCGCCTGCACCAG		22	2	0.09	30	0	0				28	0	0				T	113772845	G	T	113772845	2	4	138	1	0	0	0	0	0	0	0	1	5377	1306	46	2		2	F7	13	113772845	Silent	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	21671755	113772845	1397033	32	9986											
PSMB5	5693	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr14	23504076	23504076	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtagcggtctctccaacacGctggcaagcgccatgtctag	12	13	2	0	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	PSMB5_ENST00000493471,NS,carcinoma,0,2	PSMB5_ENST00000493471	NM_001144932	exon1	c.C15T	p.S5S	CAACACGCTGGCA		67	6	0.09	70	0	0		0	2	222	13	0.06				A	23504076	G	A	23504076	2	1	138	1	0	0	0	0	0	0	0	1	12728	1078	38	1		1	PSMB5	14	23504076	Silent	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10		23504076	83845464	33	9987											
NFATC4	4776	mdanderson.org	37	chr14	24841809	24841809	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggtcaccccgtagtcaaGgtaaaggacagacagcaggc	14	11	2	1	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_001198967	exon4	c.G1548T	p.K516N	AGTCAAGGTAAAG		18	2	0.11	36	0	0				11	0	0				T	24841809	G	T	24841809	3	4	138	1	0	0	0	0	1	0	0	0	10411	1014	35	3	1562	3	NFATC4	14	24841809	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	1337733	24841809	82507731	34	9988											
SYNE2	23224	mdanderson.org	37	chr14	64421577	64421577	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caacaaagacaatctgagagAggccttcagaattgcagaac	9	9	2	5	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_182914	exon8	c.A731G	p.E244G	TGAGAGAGGCCTT		23	3	0.13	20	0	0				0	0					G	64421577	A	G	64421577	3	3	138	1	0	0	0	0	1	0	0	0	15502	304	11	4	757	4	SYNE2	14	64421577	Missense_Mutation	SNP	A	TCGA-YU-AA4L-01A-11D-A435-10	39579768	64421577	42927963	35	9989											
TJP1	7082	mdanderson.org	37	chr15	29997939	29997939	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcatcttcatcctcttccaCagctgaaggactgaaagttc	6	12	4	2	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_003257	exon26	c.G4861A	p.V1621M	CTTCCACAGCTGA		70	4	0.06	67	0	0				106	0	0				T	29997939	C	T	29997939	3	4	138	1	0	0	0	0	1	0	0	0	15988	478	17	3	397	3	TJP1	15	29997939	Missense_Mutation	SNP	C	TCGA-YU-AA4L-01A-11D-A435-10		29997939	72533453	36	9990											
UACA	55075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	70960705	70960706	+	Frame_Shift_Del	DEL	TG	TG	-													acttcttttctgtatattttTgtgttacatctaaaagcttt					novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	TG	TG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	UACA	NM_018003	exon16	c.2318_2319del	p.773_773del	TATTTTTGTGTTA		66	35	0.53	46	0	0		235		13	0	0				-	70960706	TG	-	70960705	7	5	138	1	0	1	0	1	0	0	0	0	16884	1812	63	0	1948	0	UACA	15	70960705	Frame_Shift_Del	DEL	TG	TCGA-YU-AA4L-01A-11D-A435-10	40962766	70960705	31570687	37	9991											
E4F1	1877	mdanderson.org	37	chr16	2279574	2279574	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttccccctttggcaggtgGtgccggcagcaccaggccca	12	16	1	0	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_004424	exon3	c.G313T	p.V105L	CAGGTGGTGCCGG		23	3	0.13	14	0	0				11	0	0				T	2279574	G	T	2279574	3	4	138	1	0	0	0	0	1	0	0	0	4900	1261	44	3	323	3	E4F1	16	2279574	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10		2279574	88075179	38	9992											
TNRC6A	27327	mdanderson.org	37	chr16	24788654	24788654	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccacaaaataacggagaGgtgcagaacagcaaaaacca	9	10	0	2	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_014494	exon5	c.G564T	p.E188D	CGGAGAGGTGCAG		18	2	0.11	13	0	0				9	0	0				T	24788654	G	T	24788654	3	4	138	1	0	0	0	0	1	0	0	0	16399	991	35	3	582	3	TNRC6A	16	24788654	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	22509080	24788654	65566099	39	9993											
GFOD2	81577	mdanderson.org	37	chr16	67709829	67709829	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgtttcatgcgcacgaaGgcaggcaggaagcgcagcac	14	11	1	0	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_030819	exon3	c.C387A	p.A129A	CACGAAGGCAGGC		46	3	0.07	70	0	0				21	0	0				T	67709829	G	T	67709829	2	4	138	1	0	0	0	0	0	0	0	1	6385	987	35	3		3	GFOD2	16	67709829	Silent	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	42921175	67709829	22644924	40	9994											
ZCCHC14	23174	mdanderson.org	37	chr16	87451220	87451220	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtccatctgggtccggtagGccagggctgagcccgcgctg	16	13	1	1	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_015144	exon8	c.C818A	p.A273D	CGGTAGGCCAGGG		43	3	0.07	54	0	0				4	0	0				T	87451220	G	T	87451220	3	4	138	1	0	0	0	0	1	0	0	0	17641	1203	42	2	2055	2	ZCCHC14	16	87451220	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	19741391	87451220	2903533	41	9995											
BCAS3	54828	broad.mit.edu;mdanderson.org	37	chr17	59001819	59001819	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcattgtggcccacttccctGcccatgagaagccagtgtgc	11	14	0	1	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	BCAS3	NM_001099432	exon13	c.G1045T	p.A349S	TTCCCTGCCCATG		74	4	0.05	45	0	0		90		8	0	0				T	59001819	G	T	59001819	3	4	138	1	0	0	0	0	1	0	0	0	1350	1319	46	2	1091	2	BCAS3	17	59001819	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10		59001819	22193391	42	9996											
HMG20B	10362	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	3575627	3575638	+	In_Frame_Del	DEL	GGAGAAGATCCA	GGAGAAGATCCA	-													gaagcctataagatgtgcacGgagaagatccaggagaagaa					novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	GGAGAAGATCCA	GGAGAAGATCCA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	HMG20B	NM_006339	exon5	c.440_451del	p.147_151del	GTGCACGGAGAAG		32	11	0.34	26	0	0		12		107	0	0				-	3575638	GGAGAAGATCCA	-	3575627	7	5	138	1	0	1	0	1	0	0	0	0	7262	1103	39	0	455	0	HMG20B	19	3575627	In_Frame_Del	DEL	GGAGAAGATCCA	TCGA-YU-AA4L-01A-11D-A435-10		3575627	55553356	43	9997											
SPC24	147841	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	11259855	11259855	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctccacgcctccctggtGcacctgctccttcgcattga	8	18	0	1	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	SPC24	NM_182513	exon2	c.C220T	p.H74Y	CCTGGTGCACCTG		64	5	0.08	59	0	0		8		27	1	0.04				A	11259855	G	A	11259855	3	1	138	1	0	0	0	0	1	0	0	0	15076	1319	46	2	389	2	SPC24	19	11259855	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	7684228	11259855	47869128	44	9998											
CPAMD8	27151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	17039937	17039937	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcctggggcccagaagacaAggccacacgggcatcattgt	13	12	1	2	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_015692	exon24	c.T3100C	p.L1034L	AAGACAAGGCCAC		23	10	0.43	30	0	0				3	1	0.33				G	17039937	A	G	17039937	2	3	138	1	0	0	0	0	0	0	0	1	3818	69	3	4		4	CPAMD8	19	17039937	Silent	SNP	A	TCGA-YU-AA4L-01A-11D-A435-10	5780082	17039937	42089046	45	9999											
ZNF675	171392	broad.mit.edu	37	chr19	23836584	23836584	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tatgaattttcctatgttccGtaagatttgaggatcggtta	9	5	0	3	rs200866824	by1000genomes;alternate_allele	TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	ZNF675	NM_138330	exon4	c.C1151A	p.T384K	TGTTCCGTAAGAT		64	3	0.05	50	0	0		88		14	0	0				T	23836584	G	T	23836584	3	4	138	1	0	0	0	0	1	0	0	0	18138	1145	40	1	559	1	ZNF675	19	23836584	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	6796647	23836584	35292399	46	10000											
PAPL	0	mdanderson.org	37	chr19	39589612	39589612	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccattcagtttatcgctgtgGcagtgcgcagggctggagcc	14	11	1	0	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_001004318	exon4	c.G335T	p.G112V	GCTGTGGCAGTGC		19	2	0.11	13	0	0				0	0					T	39589612	G	T	39589612	3	4	138	1	0	0	0	0	1	0	0	0	11473	1203	42	2	345	2	PAPL	19	39589612	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	15753028	39589612	19539371	47	10001											
PPM1N	147699	mdanderson.org	37	chr19	46003744	46003744	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgctcagaagccccccaGcctgaacacagttttcagga	8	15	3	2	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_001080401	exon3	c.G1088T	p.S363I	CCCCCAGCCTGAA		51	3	0.06	38	0	0				58	0	0				T	46003744	G	T	46003744	3	4	138	1	0	0	0	0	1	0	0	0	12394	971	34	2	1098	2	PPM1N	19	46003744	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	6414132	46003744	13125239	48	10002											
GLTSCR1	29998	mdanderson.org	37	chr19	48182836	48182836	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgcccaccctgcagcctGcggatggcggggcaggcccg	16	16	0	0	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_015711	exon6	c.G409T	p.A137S	CAGCCTGCGGATG		29	3	0.1	25	0	0				1	0	0				T	48182836	G	T	48182836	3	4	138	1	0	0	0	0	1	0	0	0	6515	1319	46	2	423	2	GLTSCR1	19	48182836	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	2179092	48182836	10946147	49	10003											
ELSPBP1	64100	mdanderson.org	37	chr19	48522982	48522982	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ataatccttttcagagtatgGgggaaattctctcaggaagc	10	7	3	1	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_022142	exon5	c.G362T	p.G121V	AGTATGGGGGAAA		52	3	0.06	69	0	0				0	0					T	48522982	G	T	48522982	3	4	138	1	0	0	0	0	1	0	0	0	5111	1232	43	3	376	3	ELSPBP1	19	48522982	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	340146	48522982	10606001	50	10004											
GRIN2D	2906	mdanderson.org	37	chr19	48945427	48945427	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgagatcgagatgctggagCggctgtggctctctgggatc	16	8	1	2	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_000836	exon12	c.C2461T	p.R821W	CTGGAGCGGCTGT		23	3	0.13	36	0	0				1	0	0				T	48945427	C	T	48945427	3	4	138	1	0	0	0	0	1	0	0	0	6822	759	27	1	2503	1	GRIN2D	19	48945427	Missense_Mutation	SNP	C	TCGA-YU-AA4L-01A-11D-A435-10	422445	48945427	10183556	51	10005											
SCRT2	85508	mdanderson.org	37	chr20	644429	644429	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagctcttgtcgcactggcgGcagcggtagtgcttgaaggc	15	10	1	1	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_033129	exon2	c.C810A	p.C270X	CTGGCGGCAGCGG		19	2	0.11	20	0	0				0	0					T	644429	G	T	644429	4	4	138	1	0	0	0	0	0	1	0	0	13995	1195	42	2	117	2	SCRT2	20	644429	Nonsense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10		644429	62381091	52	10006											
GPCPD1	56261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr20	5528338	5528338	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgttatcaatgccgttgGcatccacatggatatcagac	8	12	2	1	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_019593	exon20	c.C1988A	p.A663D	CCGTTGGCATCCA		110	5	0.05	61	0	0				22	0	0				T	5528338	G	T	5528338	3	4	138	1	0	0	0	0	1	0	0	0	6642	1203	42	2	34	2	GPCPD1	20	5528338	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	4883909	5528338	57497182	53	10007											
ZNF217	7764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	52198198	52198198	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccctggagtgcaagaccaGctggtggtaggttctgaaag	15	8	1	2	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_006526	exon1	c.C1168T	p.L390L	AGACCAGCTGGTG		89	25	0.28	76	0	0				10	1	0.1				A	52198198	G	A	52198198	2	1	138	1	0	0	0	0	0	0	0	1	17829	962	34	2		2	ZNF217	20	52198198	Silent	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10	46669860	52198198	10827322	54	10008											
HRH3	11255	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	60791521	60791522	+	Frame_Shift_Ins	INS	-	-	C													cggagccgcccccaccgccaINScccccgagggtcgcctcccc					novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	HRH3	NM_007232	exon3	c.879_880insG	p.G293fs	ACCGCCACCCCCG		40	17	0.43	26	0	0		25		0	0					C	60791522	-	C	60791521	7	5	138	1	0	1	1	0	0	0	0	0	7397	146	6	0	462	0	HRH3	20	60791521	Frame_Shift_Ins	INS	-	TCGA-YU-AA4L-01A-11D-A435-10	8593323	60791521	2233999	55	10009											
ZNF70	7621	broad.mit.edu	37	chr22	24087226	24087226	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacctctttcctgaagaaaAgggtcccccaggtcctcccc	7	16	1	2	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	ZNF70	NM_021916	exon2	c.T102C	p.P34P	AAGAAAAGGGTCC		230	5	0.02	87	0	0		49		2	0	0				G	24087226	A	G	24087226	2	3	138	1	0	0	0	0	0	0	0	1	18158	59	3	4		4	ZNF70	22	24087226	Silent	SNP	A	TCGA-YU-AA4L-01A-11D-A435-10		24087226	27217340	56	10010											
MAOA	4128	mdanderson.org	37	chrX	43590942	43590942	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcttgtgtgtgttttagtGcaaatacgtaattaatgcga	10	4	0	0	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	NM_000240	exon8	c.G797T	p.C266F	TTTAGTGCAAATA		61	4	0.07	47	0	0				6	0	0				T	43590942	G	T	43590942	3	4	138	1	0	0	0	0	1	0	0	0	9274	1333	46	2	827	2	MAOA	23	43590942	Missense_Mutation	SNP	G	TCGA-YU-AA4L-01A-11D-A435-10		43590942	111679618	57	10011											
MAGEA12	4111	hgsc.bcm.edu;ucsc.edu	37	chrX	151899528	151899528	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaaaatggaatggatttcCcaatctgaataaaaaacaac	5	8	1	1	novel		TCGA-YU-AA4L-01A-11D-A435-10	TCGA-YU-AA4L-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5c166720-7105-4052-bcbd-b3f546b1043b	ef89d76a-cb3c-4473-888b-99ccd7d3dd3a	.	.	.	.	.	.	GATTTCCCAATCT		77	33	0.43	61	0	0				383	162	0.42				T	151899528	C	T	151899528	1	4	138	0	1	0	0	0	0	0	0	0	9211	638	22	3		3	MAGEA12	23	151899528	RNA	SNP	C	TCGA-YU-AA4L-01A-11D-A435-10	108308586	151899528	3371032	58	10012											
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	10394661	10394661	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtgagaaaggtgaagtgcGgggatttctgcgtgtggctg	18	5	1	2	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_015074	exon26	c.G2870A	p.R957Q	AAGTGCGGGGATT		73	16	0.22	75	0	0				9	1	0.11				A	10394661	G	A	10394661	3	1	139	1	0	0	0	0	1	0	0	0	8325	1116	39	1	4457	1	KIF1B	1	10394661	Missense_Mutation	SNP	G	TCGA-YU-AA61-01A-11D-A435-10		10394661	238855960	1	10013											
CDCP2	200008	mdanderson.org	37	chr1	54618525	54618525	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagtgcctaccttccatgGcttgggcctggagccctggg	14	12	0	1	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_201546	exon1	c.C71A	p.A24D	TCCATGGCTTGGG		80	4	0.05	88	0	0				0	0					T	54618525	G	T	54618525	3	4	139	1	0	0	0	0	1	0	0	0	3116	1203	42	2	1294	2	CDCP2	1	54618525	Missense_Mutation	SNP	G	TCGA-YU-AA61-01A-11D-A435-10	44223864	54618525	194632096	2	10014											
PGBD2	267002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	249211094	249211094	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agccaagaagaggcagaaagCagttgtgaaacctcagcgca	12	9	1	4	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_170725	exon3	c.C311G	p.A104G	AGAAAGCAGTTGT		65	18	0.28	52	0	0				30	14	0.47				G	249211094	C	G	249211094	3	3	139	1	0	0	0	0	1	0	0	0	11828	710	25	5	317	5	PGBD2	1	249211094	Missense_Mutation	SNP	C	TCGA-YU-AA61-01A-11D-A435-10	194592569	249211094	39527	3	10015											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	32667481	32667481	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctttgaggcaggacgaaGtatagcccataagtgtgccc	11	10	1	1	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_016252	exon19	c.G4196T	p.S1399I	GACGAAGTATAGC		90	9	0.1	57	0	0				4	0	0				T	32667481	G	T	32667481	3	4	139	1	0	0	0	0	1	0	0	0	1437	1029	36	3	4270	3	BIRC6	2	32667481	Missense_Mutation	SNP	G	TCGA-YU-AA61-01A-11D-A435-10		32667481	210531892	4	10016											
GPR39	2863	hgsc.bcm.edu	37	chr2	133175021	133175021	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagctttgagcgctacatcGccatctgtcaccccttcagg	8	15	4	1	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	GPR39,NS,carcinoma,0,1	GPR39	NM_001508	exon1	c.G406A	p.A136T	TACATCGCCATCT		74	3	0.04	62	0	0		0	1	5	0	0				A	133175021	G	A	133175021	3	1	139	1	0	0	0	0	1	0	0	0	6732	1087	38	1	408	1	GPR39	2	133175021	Missense_Mutation	SNP	G	TCGA-YU-AA61-01A-11D-A435-10	100507540	133175021	110024352	5	10017											
TMEM175	84286	mdanderson.org	37	chr4	947055	947055	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctctgcccacagggctctGtaccgacgacacgtcctggg	12	16	2	0	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_032326	exon8	c.G540T	p.L180L	GGCTCTGTACCGA		41	3	0.07	66	0	0				29	0	0				T	947055	G	T	947055	2	4	139	1	0	0	0	0	0	0	0	1	16150	1364	48	3		3	TMEM175	4	947055	Silent	SNP	G	TCGA-YU-AA61-01A-11D-A435-10		947055	190207221	6	10018											
DSPP	1834	ucsc.edu	37	chr4	88536880	88536880	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtaatagtagtgacagcagCaatagcagtgacagcagcaa	11	7	0	2	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	DSPP	NM_014208	exon5	c.C3066T	p.S1022S	CAGCAGCAATAGC		44	4	0.09	63	1	0.0158730159		174		0	0					T	88536880	C	T	88536880	2	4	139	1	0	0	0	0	0	0	0	1	4808	709	25	2		2	DSPP	4	88536880	Silent	SNP	C	TCGA-YU-AA61-01A-11D-A435-10	87589825	88536880	102617396	7	10019											
HERC5	51191	broad.mit.edu;bcgsc.ca	37	chr4	89388236	89388236	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacacttgcctatgtttctgAtttgggaaaggtcttttcct	8	9	2	1	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	HERC5	NM_016323	exon7	c.A938G	p.D313G	TTTCTGATTTGGG		83	6	0.07	117	1	0.0085470085		114		33	1	0.03				G	89388236	A	G	89388236	3	3	139	1	0	0	0	0	1	0	0	0	7101	333	12	4	964	4	HERC5	4	89388236	Missense_Mutation	SNP	A	TCGA-YU-AA61-01A-11D-A435-10	851356	89388236	101766040	8	10020											
MEGF10	84466	mdanderson.org	37	chr5	126753482	126753482	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacagtgtgactggaaagtGcacctgtgccccaggattca	12	10	1	2	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	MEGF10,NS,adenocarcinoma,-1,1	MEGF10	NM_001256545	exon10	c.G1283T	p.C428F	GAAAGTGCACCTG		39	3	0.08	52	0	0		-1	1	3	0	0				T	126753482	G	T	126753482	3	4	139	1	0	0	0	0	1	0	0	0	9509	1319	46	2	1317	2	MEGF10	5	126753482	Missense_Mutation	SNP	G	TCGA-YU-AA61-01A-11D-A435-10		126753482	54161778	9	10021											
PCDHB4	56131	hgsc.bcm.edu	37	chr5	140503155	140503155	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gactacgaggccctgcaggcGttcgagttccgcgtgggcgc	16	13	0	0	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	PCDHB4,caecum,carcinoma,+1,1	PCDHB4	NM_018938	exon1	c.G1575T	p.A525A	GCAGGCGTTCGAG		33	4	0.12	40	2	0.05		1	1	0	0					T	140503155	G	T	140503155	2	4	139	1	0	0	0	0	0	0	0	1	11590	1132	40	1		1	PCDHB4	5	140503155	Silent	SNP	G	TCGA-YU-AA61-01A-11D-A435-10	13749673	140503155	40412105	10	10022											
GABRA1	2554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	161277838	161277838	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaggaaaagtccaggtctgTctgactgtctttgggcctgg	14	8	3	2	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_001127643	exon3	c.T22C	p.S8P	GGTCTGTCTGACT		53	8	0.15	69	0	0				0	0					C	161277838	T	C	161277838	3	2	139	1	0	0	0	0	1	0	0	0	6194	1667	58	4	24	4	GABRA1	5	161277838	Missense_Mutation	SNP	T	TCGA-YU-AA61-01A-11D-A435-10	20774683	161277838	19637422	11	10023											
PPARD	5467	mdanderson.org	37	chr6	35391795	35391795	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgactgcaaacgaggggaGccagtacaacccacaggtgg	14	11	0	1	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_001171818	exon7	c.G497T	p.S166I	AGGGGAGCCAGTA		38	3	0.08	34	0	0				26	0	0				T	35391795	G	T	35391795	3	4	139	1	0	0	0	0	1	0	0	0	12342	971	34	2	528	2	PPARD	6	35391795	Missense_Mutation	SNP	G	TCGA-YU-AA61-01A-11D-A435-10		35391795	135723272	12	10024											
TAAR9	134860	broad.mit.edu	37	chr6	132860291	132860291	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttatatgaattttataaCtcctccttatgtttatgaga	5	6	0	2	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	.	.	.	.	TTATAACTCCTCC		99	4	0.04	76	0	0				0	0					A	132860291	C	A	132860291	1	1	139	0	1	0	0	0	0	0	0	0	15550	565	20	3		3	TAAR9	6	132860291	RNA	SNP	C	TCGA-YU-AA61-01A-11D-A435-10	97468496	132860291	38254776	13	10025											
SNX9	51429	bcgsc.ca;mdanderson.org	37	chr6	158296192	158296192	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaggccagttcgtcggctgCcagcaacaatcaccaggtac	10	14	2	0	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	SNX9	NM_016224	exon4	c.C284T	p.A95V	CGGCTGCCAGCAA		104	5	0.05	95	0	0		43		55	0	0				T	158296192	C	T	158296192	3	4	139	1	0	0	0	0	1	0	0	0	14962	739	26	2	298	2	SNX9	6	158296192	Missense_Mutation	SNP	C	TCGA-YU-AA61-01A-11D-A435-10	25435901	158296192	12818875	14	10026											
RADIL	55698	mdanderson.org	37	chr7	4876055	4876055	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagcgagtaccgcatggcGtcggggccgggctcctcggg	17	13	0	0	rs200447001	bycluster;by1000genomes	TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_018059	exon3	c.C717A	p.D239E	CATGGCGTCGGGG		45	3	0.07	39	0	0	0.001			12	0	0				T	4876055	G	T	4876055	3	4	139	1	0	0	0	0	1	0	0	0	13048	1136	40	1	2562	1	RADIL	7	4876055	Missense_Mutation	SNP	G	TCGA-YU-AA61-01A-11D-A435-10		4876055	154262608	15	10027											
TWIST1	7291	mdanderson.org	37	chr7	19156362	19156362	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacgcggacatggaccaggCcccctccatcctccagaccg	11	18	0	1	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_000474	exon1	c.G583A	p.A195T	ACCAGGCCCCCTC		37	3	0.08	40	0	0				76	0	0				T	19156362	C	T	19156362	3	4	139	1	0	0	0	0	1	0	0	0	16844	739	26	2	29	2	TWIST1	7	19156362	Missense_Mutation	SNP	C	TCGA-YU-AA61-01A-11D-A435-10	14280307	19156362	139982301	16	10028											
KCNH2	3757	mdanderson.org	37	chr7	150644785	150644785	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccggggggcctggggctggaGaagggcaccaggcggagggg	24	9	0	1	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_000238	exon12	c.C2874A	p.F958L	GCTGGAGAAGGGC		40	3	0.08	54	1	0.0185185185				4	0	0				T	150644785	G	T	150644785	3	4	139	1	0	0	0	0	1	0	0	0	8075	933	33	3	621	3	KCNH2	7	150644785	Missense_Mutation	SNP	G	TCGA-YU-AA61-01A-11D-A435-10	131488423	150644785	8493878	17	10029											
TNKS	8658	mdanderson.org	37	chr8	9627763	9627763	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgaatatgtcatctacagAggagaacaggtatgttactc	10	7	2	3	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_003747	exon26	c.A3888G	p.R1296R	CTACAGAGGAGAA		39	3	0.08	41	0	0				24	0	0				G	9627763	A	G	9627763	2	3	139	1	0	0	0	0	0	0	0	1	16378	301	11	4		4	TNKS	8	9627763	Silent	SNP	A	TCGA-YU-AA61-01A-11D-A435-10		9627763	136736259	18	10030											
PRSS3	5646	broad.mit.edu	37	chr9	33794809	33794809	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgcacatgagagagacaaGtggcttcacattgaagaagg	13	6	1	4	rs201061108		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	PRSS3	NM_001197097	exon2	c.G20A	p.S7N	AGACAAGTGGCTT		61	7	0.11	44	0	0		79		0	0					A	33794809	G	A	33794809	3	1	139	1	0	0	0	0	1	0	0	0	12670	1044	36	3		3	PRSS3	9	33794809	Missense_Mutation	SNP	G	TCGA-YU-AA61-01A-11D-A435-10		33794809	107418622	19	10031											
KIAA1279	26128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	70760227	70760227	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agagaagaaattgaaactgcAcaggcttacctagagtcatc	9	8	1	4	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_015634	exon2	c.A474C	p.A158A	AACTGCACAGGCT		33	11	0.33	27	0	0				27	14	0.52				C	70760227	A	C	70760227	2	2	139	1	0	0	0	0	0	0	0	1	8262	146	6	4		4	KIAA1279	10	70760227	Silent	SNP	A	TCGA-YU-AA61-01A-11D-A435-10		70760227	64774520	20	10032											
EXOSC1	51013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	99205531	99205531	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcagacagccggcaagcgaCgaaaagatgtagccgtggcg	14	10	1	2	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_016046	exon2	c.G105A	p.S35S	AAGCGACGAAAAG		39	11	0.28	50	0	0				74	31	0.42				T	99205531	C	T	99205531	2	4	139	1	0	0	0	0	0	0	0	1	5340	523	19	1		1	EXOSC1	10	99205531	Silent	SNP	C	TCGA-YU-AA61-01A-11D-A435-10	28445304	99205531	36329216	21	10033											
BRSK2	9024	mdanderson.org	37	chr11	1467102	1467102	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggctccccggtgcctgcGcggcgggccattgagatggc	18	14	0	1	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_001256630	exon12	c.G1329T	p.A443A	GCCTGCGCGGCGG		43	3	0.07	51	0	0				3	0	0				T	1467102	G	T	1467102	2	4	139	1	0	0	0	0	0	0	0	1	1526	1074	38	1		1	BRSK2	11	1467102	Silent	SNP	G	TCGA-YU-AA61-01A-11D-A435-10		1467102	133539414	22	10034											
HARBI1	283254	mdanderson.org	37	chr11	46637619	46637619	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tcgctgagtaggcctagaaaGattcgcccccaagagctcca	10	13	0	4	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_173811	exon2	c.C169A	p.L57I	TAGAAAGATTCGC		41	3	0.07	53	0	0				7	0	0				T	46637619	G	T	46637619	3	4	139	1	0	0	0	0	1	0	0	0	6998	942	33	3	888	3	HARBI1	11	46637619	Missense_Mutation	SNP	G	TCGA-YU-AA61-01A-11D-A435-10	45170517	46637619	88368897	23	10035											
CKAP5	9793	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	46819368	46819368	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgtaccttaagtagtgcaGcacaaaagggctttagcaag	10	8	1	0	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_001008938	exon11	c.C1325A	p.A442D	AGTGCAGCACAAA		114	7	0.06	151	0	0				31	3	0.1				T	46819368	G	T	46819368	3	4	139	1	0	0	0	0	1	0	0	0	3468	971	34	2	4909	2	CKAP5	11	46819368	Missense_Mutation	SNP	G	TCGA-YU-AA61-01A-11D-A435-10	181749	46819368	88187148	24	10036											
PGR	5241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	100933354	100933354	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggaatcaactgtatgtctTgacctggtgaaaaagtgaat	11	5	2	3	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_000926	exon4	c.A2036T	p.Q679L	ATGTCTTGACCTG		102	12	0.12	123	0	0				0	0					A	100933354	T	A	100933354	3	1	139	1	0	0	0	0	1	0	0	0	11852	1812	63	5	785	5	PGR	11	100933354	Missense_Mutation	SNP	T	TCGA-YU-AA61-01A-11D-A435-10	54113986	100933354	34073162	25	10037											
CALCOCO1	57658	hgsc.bcm.edu	37	chr12	54115831	54115831	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtactgttccatcagctccGtgtgctcctgcctggcagtt	10	13	1	0	rs146731373	bycluster;alternate_allele	TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	CALCOCO1,NS,carcinoma,0,1	CALCOCO1	NM_020898	exon5	c.C587A	p.T196K	AGCTCCGTGTGCT		45	2	0.04	43	0	0		0	1	64	0	0				T	54115831	G	T	54115831	3	4	139	1	0	0	0	0	1	0	0	0	2595	1145	40	1	1532	1	CALCOCO1	12	54115831	Missense_Mutation	SNP	G	TCGA-YU-AA61-01A-11D-A435-10		54115831	79736064	26	10038											
MMP17	4326	mdanderson.org	37	chr12	132326266	132326266	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacactccatcatgcggccGtactaccagggcccggtggg	13	15	1	0	rs141989989	bycluster;by1000genomes	TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_016155	exon5	c.G804A	p.P268P	GCGGCCGTACTAC		40	3	0.08	55	0	0	0.001			3	0	0				A	132326266	G	A	132326266	2	1	139	1	0	0	0	0	0	0	0	1	9703	1132	40	1		1	MMP17	12	132326266	Silent	SNP	G	TCGA-YU-AA61-01A-11D-A435-10	78210435	132326266	1525629	27	10039											
ULK1	8408	mdanderson.org	37	chr12	132403798	132403798	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtggcctgcgcttcacgctGctgttcgtgcagcacgtcct	12	15	1	0	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_003565	exon24	c.G2553A	p.L851L	CACGCTGCTGTTC		14	3	0.21	24	0	0				82	0	0				A	132403798	G	A	132403798	2	1	139	1	0	0	0	0	0	0	0	1	17034	1306	46	2		2	ULK1	12	132403798	Silent	SNP	G	TCGA-YU-AA61-01A-11D-A435-10	77532	132403798	1448097	28	10040											
LMO7	4008	mdanderson.org	37	chr13	76391409	76391409	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaacaagatcagaaatggCaggatgtgagtattttgggg	14	3	1	4	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_015842	exon9	c.C1360T	p.Q454X	AAATGGCAGGATG		16	3	0.19	18	0	0				16	0	0				T	76391409	C	T	76391409	4	4	139	1	0	0	0	0	0	1	0	0	8895	711	25	2	2265	2	LMO7	13	76391409	Nonsense_Mutation	SNP	C	TCGA-YU-AA61-01A-11D-A435-10		76391409	38778469	29	10041											
PACS2	23241	mdanderson.org	37	chr14	105859025	105859025	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gcagcacagcctgcggacagGaagagggacgccgagaagaa	16	10	0	3	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_001100913	exon23	c.G2325T	p.R775S	GGACAGGAAGAGG		40	3	0.08	35	0	0				57	0	0				T	105859025	G	T	105859025	3	4	139	1	0	0	0	0	1	0	0	0	11419	1165	41	3	2378	3	PACS2	14	105859025	Missense_Mutation	SNP	G	TCGA-YU-AA61-01A-11D-A435-10		105859025	1490515	30	10042											
LTK	4058	mdanderson.org	37	chr15	41800323	41800323	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttctgggcacaggcattcaGccagctggagctctgcctgc	12	14	3	0	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_002344	exon9	c.C1193A	p.A398D	CATTCAGCCAGCT		46	3	0.07	32	0	0				12	0	0				T	41800323	G	T	41800323	3	4	139	1	0	0	0	0	1	0	0	0	9124	971	34	2	1449	2	LTK	15	41800323	Missense_Mutation	SNP	G	TCGA-YU-AA61-01A-11D-A435-10		41800323	60731069	31	10043											
SCAPER	49855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	76668615	76668615	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagggagctggccatgtgcCggaatgcaagggacaagccc	16	11	0	0	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_020843	exon28	c.G3743T	p.R1248L	ATGTGCCGGAATG		68	7	0.1	70	0	0				23	3	0.13				A	76668615	C	A	76668615	3	1	139	1	0	0	0	0	1	0	0	0	13930	652	23	1	475	1	SCAPER	15	76668615	Missense_Mutation	SNP	C	TCGA-YU-AA61-01A-11D-A435-10	34868292	76668615	25862777	32	10044											
NTHL1	4913	mdanderson.org	37	chr16	2089944	2089944	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcagagaccctgggcggccGggcagagggcttggttgagg	19	9	1	3	rs367629024	alternate_allele	TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_002528	exon6	c.C920A	p.P307Q	GCGGCCGGGCAGA		15	2	0.13	15	0	0				28	0	0				T	2089944	G	T	2089944	3	4	139	1	0	0	0	0	1	0	0	0	10745	1116	39	1	22	1	NTHL1	16	2089944	Missense_Mutation	SNP	G	TCGA-YU-AA61-01A-11D-A435-10		2089944	88264809	33	10045											
MYH11	4629	mdanderson.org	37	chr16	15841974	15841974	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgcgaatgccttccagcaCcccattgcaccgcagctgct	9	16	0	0	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	MYH11_ENST00000396324,NS,carcinoma,+1,2	MYH11_ENST00000396324	NM_001040114	exon18	c.G2131T	p.V711L	CCAGCACCCCATT		45	3	0.07	48	0	0		1	2	6	0	0				A	15841974	C	A	15841974	3	1	139	1	0	0	0	0	1	0	0	0	10078	507	18	3	3943	3	MYH11	16	15841974	Missense_Mutation	SNP	C	TCGA-YU-AA61-01A-11D-A435-10	13752030	15841974	74512779	34	10046											
QPRT	23475	mdanderson.org	37	chr16	29706335	29706335	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtgctgccgccgctgcaGtggaggccgccaggggggcc	18	15	0	0	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_014298	exon2	c.G364T	p.V122L	GCTGCAGTGGAGG		19	2	0.11	23	0	0				137	0	0				T	29706335	G	T	29706335	3	4	139	1	0	0	0	0	1	0	0	0	12927	1029	36	3	370	3	QPRT	16	29706335	Missense_Mutation	SNP	G	TCGA-YU-AA61-01A-11D-A435-10	13864361	29706335	60648418	35	10047											
RPGRIP1L	23322	hgsc.bcm.edu	37	chr16	53682980	53682980	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atccatgggaactcttaatcGgaaccagtattccactgtgc	8	11	1	0	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_001127897	exon16	c.C2200A	p.R734R	TTAATCGGAACCA		88	4	0.05	114	0	0				2	0	0				T	53682980	G	T	53682980	2	4	139	1	0	0	0	0	0	0	0	1	13601	1124	39	1		1	RPGRIP1L	16	53682980	Silent	SNP	G	TCGA-YU-AA61-01A-11D-A435-10	23976645	53682980	36671773	36	10048											
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	57721790	57721790	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaatccaattcgaagaccaAtttcagcagacagcgccatc	7	12	1	2	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_004859	exon2	c.A196G	p.I66V	AGACCAATTTCAG		125	33	0.26	106	0	0				99	22	0.22				G	57721790	A	G	57721790	3	3	139	1	0	0	0	0	1	0	0	0	3589	101	4	4	202	4	CLTC	17	57721790	Missense_Mutation	SNP	A	TCGA-YU-AA61-01A-11D-A435-10		57721790	23473420	37	10049											
FBN3	84467	mdanderson.org	37	chr19	8148193	8148193	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacagtggcagcggaaggagCcaaggctgttgatgcactcc	15	10	0	1	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_032447	exon56	c.G7151A	p.G2384D	AAGGAGCCAAGGC		39	3	0.08	32	0	0				71	0	0				T	8148193	C	T	8148193	3	4	139	1	0	0	0	0	1	0	0	0	5736	739	26	2	1310	2	FBN3	19	8148193	Missense_Mutation	SNP	C	TCGA-YU-AA61-01A-11D-A435-10		8148193	50980790	38	10050											
ZNF799	90576	ucsc.edu	37	chr19	12501560	12501560	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctctcatgtgaattcttTcatgtcgtagaaagcaagtg	8	8	4	2	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	ZNF799	NM_001080821	exon4	c.A1652G	p.E551G	ATTCTTTCATGTC		183	3	0.02	161	1	0.0062111801		111		30	6	0.2	rescued with RNA-seq			C	12501560	T	C	12501560	3	2	139	1	0	0	0	0	1	0	0	0	18214	1783	62	4	283	4	ZNF799	19	12501560	Missense_Mutation	SNP	T	TCGA-YU-AA61-01A-11D-A435-10	4353367	12501560	46627423	39	10051											
CYP4F8	11283	broad.mit.edu	37	chr19	15726774	15726775	+	RNA	DEL	CC	CC	-													ctcttcccactcattcctctCctcactcactcattcctctc					novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	CC	CC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	CYP4F8	.	.	.	.	TCCTCTCCTCACT		18	5	0.28	10	0	0		64		0	0					-	15726775	CC	-	15726774	6	5	139	0	1	1	0	1	0	0	0	0	4214	870	30	0		0	CYP4F8	19	15726774	RNA	DEL	CC	TCGA-YU-AA61-01A-11D-A435-10	3225214	15726774	43402209	40	10052											
SCAF1	58506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	50148669	50148669	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacctgcccaatgataaagGtatggcggcttccggttcct	12	11	0	1	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	SCAF1,NS,carcinoma,0,1	SCAF1	NM_021228	exon3	c.166+1G>A	.	ATAAAGGTATGGC		163	31	0.19	125	0	0		0	1	0	0					A	50148669	G	A	50148669	5	1	139	1	0	0	0	0	0	0	1	0	13920	1275	44	3	173	3	SCAF1	19	50148669	Splice_Site	SNP	G	TCGA-YU-AA61-01A-11D-A435-10	34421895	50148669	8980314	41	10053											
ZNF628	89887	mdanderson.org	37	chr19	55995616	55995616	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcggggctccccggggctcCagcctcccagatggtgcaag	15	16	0	1	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_033113	exon3	c.C3056T	p.P1019L	GGGCTCCAGCCTC		34	3	0.09	38	0	0				16	0	0				T	55995616	C	T	55995616	3	4	139	1	0	0	0	0	1	0	0	0	18108	594	21	3	3046	3	ZNF628	19	55995616	Missense_Mutation	SNP	C	TCGA-YU-AA61-01A-11D-A435-10	5846947	55995616	3133367	42	10054											
ZNF341	84905	mdanderson.org	37	chr20	32333094	32333094	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagcaggccccaactcctGccaatcgccaggtatttgtt	8	15	0	0	rs373744673	alternate_allele	TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_032819	exon3	c.G328T	p.A110S	ACTCCTGCCAATC		40	3	0.08	51	0	0				5	0	0				T	32333094	G	T	32333094	3	4	139	1	0	0	0	0	1	0	0	0	17913	1319	46	2	338	2	ZNF341	20	32333094	Missense_Mutation	SNP	G	TCGA-YU-AA61-01A-11D-A435-10		32333094	30692426	43	10055											
BAGE2	85319	broad.mit.edu	37	chr21	11058282	11058282	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggtacatttctcttcacaGcatttgatagtggctccaaa	8	9	2	1	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_182482	exon3	c.C158T	p.A53V	TTCACAGCATTTG		185	6	0.03	135	2	0.0148148148				1	0	0				A	11058282	G	A	11058282	1	1	139	0	1	0	0	0	0	0	0	0	1290	971	34	2		2	BAGE2	21	11058282	RNA	SNP	G	TCGA-YU-AA61-01A-11D-A435-10		11058282	37071613	44	10056											
SYTL4	94121	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	99945112	99945112	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ctggtgttcttcttaaatatCatctcaccctcatccacaaa	3	13	5	0	novel		TCGA-YU-AA61-01A-11D-A435-10	TCGA-YU-AA61-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a045392a-1a5d-4642-8bd1-f1671db2fd63	1a30d3c6-2e38-4057-b0a9-4509f5a563a4	.	.	NM_001129896	exon9	c.G768T	p.M256I	AAATATCATCTCA		171	12	0.07	130	0	0				3	0	0				A	99945112	C	A	99945112	3	1	139	1	0	0	0	0	1	0	0	0	15541	826	29	3	1287	3	SYTL4	23	99945112	Missense_Mutation	SNP	C	TCGA-YU-AA61-01A-11D-A435-10		99945112	55325448	45	10057											
ATAD3C	219293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	1396296	1396296	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccggccacagaaggaaagCggtaagtgtcccgccccacc	12	15	0	1	rs202189170	bycluster	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_001039211	exon10	c.C979T	p.R327W	GGAAAGCGGTAAG		72	11	0.15	87	0	0				15	1	0.07				T	1396296	C	T	1396296	3	4	140	1	0	0	0	0	1	0	0	0	1074	782	27	1	1017	1	ATAD3C	1	1396296	Missense_Mutation	SNP	C	TCGA-ZM-AA05-01A-12D-A435-10		1396296	247854325	1	10058											
MTOR	2475	broad.mit.edu	37	chr1	11264759	11264759	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcctggcagcgccccagGcctgtgatcccacaggtgac	11	18	0	2	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	MTOR	NM_004958	exon26	c.C3803A	p.A1268D	CCCCAGGCCTGTG		226	8	0.04	147	0	0		327		0	0					T	11264759	G	T	11264759	5	4	140	1	0	0	0	0	0	0	1	0	10001	1217	42	2	3978	2	MTOR	1	11264759	Splice_Site	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	9868463	11264759	237985862	2	10059											
HSPG2	3339	broad.mit.edu	37	chr1	22213941	22213941	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcatcgctgccgtcctcGcagtcctcctgtccgtcgca	9	18	1	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	HSPG2	NM_005529	exon8	c.C930A	p.C310X	GTCCTCGCAGTCC		104	3	0.03	59	0	0		311		0	0					T	22213941	G	T	22213941	4	4	140	1	0	0	0	0	0	1	0	0	7473	1079	38	1	12605	1	HSPG2	1	22213941	Nonsense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	10949182	22213941	227036680	3	10060											
CCDC28B	79140	broad.mit.edu	37	chr1	32670247	32670248	+	Frame_Shift_Del	DEL	TG	TG	-													ctttccaaggaacccgtctaTgtgtgtgtgttcctgagagg					novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	TG	TG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	CCDC28B	.	.	.	.	CGTCTATGTGTGT		169	8	0.05	150	0	0		21		0	0					-	32670248	TG	-	32670247	7	5	140	1	0	1	0	1	0	0	0	0	2822	1479	51	0		0	CCDC28B	1	32670247	Frame_Shift_Del	DEL	TG	TCGA-ZM-AA05-01A-12D-A435-10	10456306	32670247	216580374	4	10061											
ST6GALNAC5	81849	broad.mit.edu	37	chr1	77334301	77334301	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcagcagcagcaAcagcagcagcaggcgtcggc	14	14	0	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	ST6GALNAC5	NM_030965	exon2	c.A135G	p.Q45Q	GCAGCAACAGCAG		177	6	0.03	85	1	0.0117647059		59		0	0					G	77334301	A	G	77334301	2	3	140	1	0	0	0	0	0	0	0	1	15282	40	2	4		4	ST6GALNAC5	1	77334301	Silent	SNP	A	TCGA-ZM-AA05-01A-12D-A435-10	44664054	77334301	171916320	5	10062											
OLFML3	56944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	114523051	114523051	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	actgctggaggtggcagagaAggagcgggaggcactcagaa	18	7	1	2	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_020190	exon2	c.A212T	p.K71M	CAGAGAAGGAGCG		159	30	0.19	130	0	0				5	1	0.2				T	114523051	A	T	114523051	3	4	140	1	0	0	0	0	1	0	0	0	10906	72	3	5	218	5	OLFML3	1	114523051	Missense_Mutation	SNP	A	TCGA-ZM-AA05-01A-12D-A435-10	37188750	114523051	134727570	6	10063											
ZC3H11A	9877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	203819655	203819655	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttgtagctaaacccaaagTgaacgtgaagccatctgtgg	10	9	1	2	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_014827	exon18	c.T1952C	p.V651A	CCAAAGTGAACGT		192	32	0.17	142	0	0				6	3	0.5				C	203819655	T	C	203819655	3	2	140	1	0	0	0	0	1	0	0	0	17618	1696	59	4	2006	4	ZC3H11A	1	203819655	Missense_Mutation	SNP	T	TCGA-ZM-AA05-01A-12D-A435-10	89296604	203819655	45430966	7	10064											
HOXD9	3235	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	176988212	176988212	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cgcgactgggacgggcggctCgtcggagccctcagcttgca	16	14	1	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_014213	exon1	c.C716T	p.S239L	GCGGCTCGTCGGA		185	21	0.11	114	0	0				0	0					T	176988212	C	T	176988212	3	4	140	1	0	0	0	0	1	0	0	0	7366	893	31	1	718	1	HOXD9	2	176988212	Missense_Mutation	SNP	C	TCGA-ZM-AA05-01A-12D-A435-10		176988212	66211161	8	10065											
PRR21	643905	hgsc.bcm.edu	37	chr2	240982009	240982009	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatggaggaagggccgtggGtgaagaggcatggacgaagg	21	5	0	2	rs202192655		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	PRR21,NS,malignant_melanoma,0,2	PRR21	NM_001080835	exon1	c.C391T	p.P131S	CCGTGGGTGAAGA		20	5	0.25	8	1	0.125		0	2	0	0					A	240982009	G	A	240982009	3	1	140	1	0	0	0	0	1	0	0	0	12643	1261	44	3	781	3	PRR21	2	240982009	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	63993797	240982009	2217364	9	10066											
BEND4	389206	hgsc.bcm.edu;broad.mit.edu	37	chr4	42145741	42145742	+	Frame_Shift_Del	DEL	AG	AG	-													ccgagagcaggtaattttgtAgagagtcagtgaaaaccctc					novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	AG	AG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	BEND4	NM_001159547	exon3	c.758_759del	p.253_253del	TTTTGTAGAGAGT		148	12	0.08	114	0	0		67		6	0	0				-	42145742	AG	-	42145741	7	5	140	1	0	1	0	1	0	0	0	0	1398	420	15	0	862	0	BEND4	4	42145741	Frame_Shift_Del	DEL	AG	TCGA-ZM-AA05-01A-12D-A435-10		42145741	149008535	10	10067											
KIT	3815	hgsc.bcm.edu;broad.mit.edu	37	chr4	55599320	55599320	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgattttggtctagccagaGacatcaagaatgattctaat	9	6	3	4	rs121913506	bycluster	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	KIT,colon,carcinoma,0,932	KIT	NM_000222	exon17	c.G2446T	p.D816Y	GCCAGAGACATCA		116	11	0.09	62	1	0.0161290323		0	932	1	0	0				T	55599320	G	T	55599320	3	4	140	1	0	0	0	0	1	0	0	0	8371	942	33	3	2512	3	KIT	4	55599320	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	13453579	55599320	135554956	11	10068											
DSPP	1834	bcgsc.ca	37	chr4	88536953	88536953	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcgatagcagtgacagcagcGatagcagtgacagcagtgac	14	9	0	3	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	DSPP	NM_014208	exon5	c.G3139A	p.D1047N	AGCAGCGATAGCA		71	7	0.1	50	1	0.02		174		0	0					A	88536953	G	A	88536953	3	1	140	1	0	0	0	0	1	0	0	0	4808	1058	37	1	3153	1	DSPP	4	88536953	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	32937633	88536953	102617323	12	10069											
ANK2	287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	114271404	114271404	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atcgatatgacatcagaaaaAagtaagaatttaaagaaaat	6	3	1	4	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_001148	exon37	c.A4425C	p.K1475N	AGAAAAAAGTAAG		55	5	0.09	34	0	0				0	0					C	114271404	A	C	114271404	3	2	140	1	0	0	0	0	1	0	0	0	617	28	1	4	4636	4	ANK2	4	114271404	Missense_Mutation	SNP	A	TCGA-ZM-AA05-01A-12D-A435-10	25734451	114271404	76882872	13	10070											
DDX60	55601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	169146761	169146761	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	taggaaagtggtaaagtcctCcataattttcatgttatatt	7	5	1	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_017631	exon34	c.G4600A	p.E1534K	AGTCCTCCATAAT		132	16	0.12	116	0	0				3	2	0.67				T	169146761	C	T	169146761	3	4	140	1	0	0	0	0	1	0	0	0	4401	864	30	3	558	3	DDX60	4	169146761	Missense_Mutation	SNP	C	TCGA-ZM-AA05-01A-12D-A435-10	54875357	169146761	22007515	14	10071											
BRD9	65980	mdanderson.org	37	chr5	884095	884095	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgatcctgtcccgagcttcGtcagctgcgtgctccaccag	10	15	1	1	rs372444870	alternate_allele	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_023924	exon8	c.C924A	p.D308E	AGCTTCGTCAGCT		44	3	0.07	50	0	0				6	0	0				T	884095	G	T	884095	3	4	140	1	0	0	0	0	1	0	0	0	1509	1136	40	1	905	1	BRD9	5	884095	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10		884095	180031165	15	10072											
SEPT8	23176	mdanderson.org	37	chr5	132096546	132096546	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgaggtggcgtgcaaggCctgcgactgcagggcctcca	16	13	0	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	SEPT8,NS,carcinoma,0,1	SEPT8	NM_015146	exon9	c.G1234T	p.A412S	GCAAGGCCTGCGA		116	14	0.12	61	1	0.0163934426		0	1	0	0					A	132096546	C	A	132096546	3	1	140	1	0	0	0	0	1	0	0	0	14123	739	26	2	280	2	SEPT8	5	132096546	Missense_Mutation	SNP	C	TCGA-ZM-AA05-01A-12D-A435-10	131212451	132096546	48818714	16	10073											
FAM53C	51307	broad.mit.edu	37	chr5	137681245	137681245	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ctggggtcaagcggcgccacGaggaagacccccggcgtctg	16	14	2	1	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	FAM53C	NM_001135647	exon4	c.G868T	p.E290X	CGCCACGAGGAAG		113	3	0.03	99	0	0		35		2	0	0				T	137681245	G	T	137681245	4	4	140	1	0	0	0	0	0	1	0	0	5616	1059	37	1	878	1	FAM53C	5	137681245	Nonsense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	5584699	137681245	43234015	17	10074											
KIAA1191	57179	mdanderson.org	37	chr5	175777718	175777718	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgcctgtcgctcaaaatgCtgaatgctttcctgggtctg	10	12	2	1	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_020444	exon6	c.G357A	p.Q119Q	AAAATGCTGAATG		46	3	0.07	39	0	0				13	0	0				T	175777718	C	T	175777718	2	4	140	1	0	0	0	0	0	0	0	1	8253	796	28	2		2	KIAA1191	5	175777718	Silent	SNP	C	TCGA-ZM-AA05-01A-12D-A435-10	38096473	175777718	5137542	18	10075											
RPP40	10799	ucsc.edu	37	chr6	4995431	4995431	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aaaaccatgttcatttttttCccaagaaacagggctgtctg	7	9	2	1	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	RPP40	NM_006638	exon8	c.G973A	p.E325K	TTTTTTCCCAAGA		122	1	0.01	101	1	0.0099009901		36		71	7	0.1				T	4995431	C	T	4995431	3	4	140	1	0	0	0	0	1	0	0	0	13665	864	30	3	122	3	RPP40	6	4995431	Missense_Mutation	SNP	C	TCGA-ZM-AA05-01A-12D-A435-10		4995431	166119636	19	10076											
PFDN6	10471	broad.mit.edu	37	chr6	33258148	33258148	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgtggtctttaaacttctgGgtccggtgctagtcaaacag	11	9	3	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	PFDN6	NM_001185181	exon3	c.G181T	p.G61C	CTTCTGGGTCCGG		186	5	0.03	102	0	0		9		770	1	0				T	33258148	G	T	33258148	3	4	140	1	0	0	0	0	1	0	0	0	11806	1232	43	3	191	3	PFDN6	6	33258148	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	28262717	33258148	137856919	20	10077											
SLC26A8	116369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	35960389	35960389	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gccacagcagccaggtaagcActcattgcagactccggaag	11	13	1	1	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_052961	exon6	c.T690C	p.S230S	GTAAGCACTCATT		57	9	0.16	60	0	0				0	0					G	35960389	A	G	35960389	2	3	140	1	0	0	0	0	0	0	0	1	14577	156	6	4		4	SLC26A8	6	35960389	Silent	SNP	A	TCGA-ZM-AA05-01A-12D-A435-10	2702241	35960389	135154678	21	10078											
SMPD2	6610	broad.mit.edu	37	chr6	109764880	109764880	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtcctggcggctggaggAggggccggggaagctgccat	20	9	0	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	SMPD2	NM_003080	exon10	c.A1044G	p.G348G	TGGAGGAGGGGCC		106	4	0.04	64	0	0		25		83	2	0.02				G	109764880	A	G	109764880	2	3	140	1	0	0	0	0	0	0	0	1	14858	291	11	4		4	SMPD2	6	109764880	Silent	SNP	A	TCGA-ZM-AA05-01A-12D-A435-10	73804491	109764880	61350187	22	10079											
TTYH3	80727	mdanderson.org	37	chr7	2686862	2686862	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcgctccgccacgccaaccGcacggtggccggggtccagg	14	18	0	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_025250	exon3	c.G380A	p.R127H	CCAACCGCACGGT		43	3	0.07	29	0	0				4	0	0				A	2686862	G	A	2686862	3	1	140	1	0	0	0	0	1	0	0	0	16802	1087	38	1	390	1	TTYH3	7	2686862	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10		2686862	156451801	23	10080											
TSPAN13	27075	broad.mit.edu	37	chr7	16817466	16817466	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gaacaatacggcaagtgctcGaaatgacatccagagaaatc	9	9	0	2	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	TSPAN13	NM_014399	exon4	c.G356T	p.R119L	GTGCTCGAAATGA		253	5	0.02	128	0	0		13		0	0					T	16817466	G	T	16817466	3	4	140	1	0	0	0	0	1	0	0	0	16697	1058	37	1	370	1	TSPAN13	7	16817466	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	14130604	16817466	142321197	24	10081											
NUP205	23165	broad.mit.edu	37	chr7	135291662	135291662	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actacaaacctacaagatccAggtatagcctaagacataaa	5	10	0	2	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	NUP205	NM_015135	exon21	c.A3069G	p.P1023P	AGATCCAGGTATA		160	3	0.02	93	0	0		198		0	0					G	135291662	A	G	135291662	5	3	140	1	0	0	0	0	0	0	1	0	10806	202	7	4	3151	4	NUP205	7	135291662	Splice_Site	SNP	A	TCGA-ZM-AA05-01A-12D-A435-10	118474196	135291662	23847001	25	10082											
GIMAP6	474344	broad.mit.edu	37	chr7	150325069	150325069	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagttgggcctcctgctccTccccctgtgccctgttgttg	11	16	0	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	GIMAP6	NM_001244072	exon3	c.A827G	p.E276G	TGCTCCTCCCCCT		149	5	0.03	93	2	0.0215053763		60		1	0	0				C	150325069	T	C	150325069	3	2	140	1	0	0	0	0	1	0	0	0	6424	1551	54	4	265	4	GIMAP6	7	150325069	Missense_Mutation	SNP	T	TCGA-ZM-AA05-01A-12D-A435-10	15033407	150325069	8813594	26	10083											
ATG9B	285973	broad.mit.edu	37	chr7	150715013	150715013	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaggaacagatgtccccaAccccagccacatccacagtg	7	16	0	1	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	ATG9B	.	.	.	.	TCCCCAACCCCAG		90	6	0.07	66	2	0.0303030303		51		1	0	0				C	150715013	A	C	150715013	3	2	140	1	0	0	0	0	1	0	0	0	1102	43	2	4	800	4	ATG9B	7	150715013	Missense_Mutation	SNP	A	TCGA-ZM-AA05-01A-12D-A435-10	389944	150715013	8423650	27	10084											
MFHAS1	9258	broad.mit.edu	37	chr8	8747748	8747748	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcatggctagcaatggacaGggtgtctggctgcaggactc	15	9	1	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	MFHAS1	NM_004225	exon1	c.C2821A	p.L941M	TGGACAGGGTGTC		244	4	0.02	182	0	0		58		4	0	0				T	8747748	G	T	8747748	3	4	140	1	0	0	0	0	1	0	0	0	9570	991	35	3	349	3	MFHAS1	8	8747748	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10		8747748	137616274	28	10085											
DUSP26	78986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	33449560	33449560	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaccctgccgcagcctgcGgtccagggccaggagctgcc	14	17	0	1	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_024025	exon4	c.C607A	p.R203S	GCCTGCGGTCCAG		83	11	0.13	71	0	0				0	0					T	33449560	G	T	33449560	3	4	140	1	0	0	0	0	1	0	0	0	4849	1116	39	1	32	1	DUSP26	8	33449560	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	24701812	33449560	112914462	29	10086											
EPPK1	83481	bcgsc.ca;mdanderson.org	37	chr8	144940501	144940501	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	taggggtcggtgtagccggtGacggcgcgctcggccgacag	19	11	0	1	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	EPPK1	NM_031308	exon1	c.C6921T	p.V2307V	GCCGGTGACGGCG		150	12	0.08	89	1	0.0112359551		199		3	0	0				A	144940501	G	A	144940501	2	1	140	1	0	0	0	0	0	0	0	1	5218	1277	45	3		3	EPPK1	8	144940501	Silent	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	111490941	144940501	1423521	30	10087											
PLEC	5339	broad.mit.edu;mdanderson.org	37	chr8	144996952	144996952	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgcagcttgaggcgctcaGcctcagcgctcatctccagc	10	17	4	1	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	PLEC	NM_201380	exon31	c.C7556A	p.A2519D	CGCTCAGCCTCAG		62	10	0.16	37	3	0.0810810811		1144		5	0	0				T	144996952	G	T	144996952	3	4	140	1	0	0	0	0	1	0	0	0	12099	971	34	2	6506	2	PLEC	8	144996952	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	56451	144996952	1367070	31	10088											
CDHR1	92211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	85972858	85972858	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcgcacaggccatagacgaGgatgcagaggaacccaacaa	12	11	0	2	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_001171971	exon16	c.G1794C	p.E598D	AGACGAGGATGCA		148	16	0.11	93	0	0				0	0					C	85972858	G	C	85972858	3	2	140	1	0	0	0	0	1	0	0	0	3140	991	35	5	1856	5	CDHR1	10	85972858	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10		85972858	49561889	32	10089											
ACSL5	51703	broad.mit.edu	37	chr10	114182136	114182136	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tacctgaaggaccctgagaaGacacaggaagccctggacag	12	11	0	3	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	ACSL5	NM_016234	exon17	c.G1698T	p.K566N	TGAGAAGACACAG		92	5	0.05	52	0	0		51		17	0	0				T	114182136	G	T	114182136	3	4	140	1	0	0	0	0	1	0	0	0	180	933	33	3	1764	3	ACSL5	10	114182136	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	28209278	114182136	21352611	33	10090											
ZDHHC24	254359	mdanderson.org	37	chr11	66307129	66307129	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agggctgcctgcaggttgtgGcagggacccaggtcatagga	17	9	1	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_207340	exon3	c.C726A	p.C242X	GTTGTGGCAGGGA		27	3	0.11	20	0	0				63	0	0				T	66307129	G	T	66307129	4	4	140	1	0	0	0	0	0	1	0	0	17672	1195	42	2	132	2	ZDHHC24	11	66307129	Nonsense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10		66307129	68699387	34	10091											
UNC93B1	81622	broad.mit.edu	37	chr11	67763107	67763107	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtccagtcttgttcagggcActgcccacaccccaaagggc	10	15	2	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	CAGGGCACTGCCC		82	5	0.06	75	2	0.0266666667				72	0	0				G	67763107	A	G	67763107	2	3	140	1	0	0	0	0	0	0	0	1	17056	156	6	4		4	UNC93B1	11	67763107	Silent	SNP	A	TCGA-ZM-AA05-01A-12D-A435-10	1455978	67763107	67243409	35	10092											
BCL9L	283149	mdanderson.org	37	chr11	118769751	118769751	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcacacccggtgggtatgcGtcgcccatgcgcccagccat	12	16	0	0	rs141872454	bycluster;by1000genomes	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	BCL9L_ENST00000392849,NS,carcinoma,0,2	BCL9L_ENST00000392849	NM_182557	exon8	c.C3873T	p.D1291D	GTATGCGTCGCCC		43	3	0.07	40	0	0	0	0	2	5	0	0				A	118769751	G	A	118769751	2	1	140	1	0	0	0	0	0	0	0	1	1380	1136	40	1		1	BCL9L	11	118769751	Silent	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	51006644	118769751	16236765	36	10093											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529	bycluster	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	KRAS_ENST00000256078,NS,adenocarcinoma,0,25136	KRAS_ENST00000256078	NM_004985	exon2	c.G35T	p.G12V	ACGCCACCAGCTC		302	20	0.07	181	0	0		0	25136	1	0	0				A	25398284	C	A	25398284	3	1	140	1	0	0	0	0	1	0	0	0	8480	507	18	3	671	3	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-ZM-AA05-01A-12D-A435-10		25398284	108453611	37	10094											
RACGAP1	29127	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	50393482	50393482	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcccgccatcattgggaacaGtcactgtagtttttgcaact	9	11	2	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_013277	exon10	c.C665G	p.T222S	GGAACAGTCACTG		101	10	0.1	94	0	0				7	0	0				C	50393482	G	C	50393482	3	2	140	1	0	0	0	0	1	0	0	0	13028	1029	36	5	1273	5	RACGAP1	12	50393482	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	24995198	50393482	83458413	38	10095											
KRT82	3888	mdanderson.org	37	chr12	52794398	52794398	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttcatcaggaaggctgtGtccacgtcctgcagcagagc	12	13	2	1	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_033033	exon4	c.C690A	p.D230E	GGCTGTGTCCACG		47	3	0.06	31	0	0				0	0					T	52794398	G	T	52794398	3	4	140	1	0	0	0	0	1	0	0	0	8538	1368	48	3	875	3	KRT82	12	52794398	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	2400916	52794398	81057497	39	10096											
ZMYM2	7750	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr13	20610939	20610939	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gattgagatgtgttacttgcAactattgttctcagctatgt	9	6	1	1	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_001190964	exon13	c.A2182T	p.N728Y	ACTTGCAACTATT		136	12	0.09	126	0	0				3	0	0				T	20610939	A	T	20610939	3	4	140	1	0	0	0	0	1	0	0	0	17757	130	5	5	2220	5	ZMYM2	13	20610939	Missense_Mutation	SNP	A	TCGA-ZM-AA05-01A-12D-A435-10		20610939	94558939	40	10097											
NUPL1	9818	bcgsc.ca	37	chr13	25875927	25875927	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagacatgtccacagggttcTccttcgggtccgggactctg	12	13	2	1	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	NUPL1	NM_014089	exon1	c.T16C	p.S6P	GGGTTCTCCTTCG		58	4	0.07	69	0	0		37		8	0	0				C	25875927	T	C	25875927	3	2	140	1	0	0	0	0	1	0	0	0	10821	1551	54	4	18	4	NUPL1	13	25875927	Missense_Mutation	SNP	T	TCGA-ZM-AA05-01A-12D-A435-10	5264988	25875927	89293951	41	10098											
ACIN1	22985	broad.mit.edu	37	chr14	23530745	23530745	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctggaccgggggtgggggTggggggtgcaggggccgtgg	28	6	0	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	ACIN1	NM_014977	exon17	c.A3360C	p.P1120P	TGGGGGTGGGGGG		77	18	0.23	50	5	0.1		147		67	3	0.04				G	23530745	T	G	23530745	2	3	140	1	0	0	0	0	0	0	0	1	142	1683	59	4		4	ACIN1	14	23530745	Silent	SNP	T	TCGA-ZM-AA05-01A-12D-A435-10		23530745	83818795	42	10099											
KIAA0586	9786	broad.mit.edu	37	chr14	58934640	58934640	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcctcagcttactgtgcaGgtatgccagggtgcatgagt	12	11	1	1	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	KIAA0586	NM_001244189	exon18	c.G2601T	p.Q867H	TGTGCAGGTATGC		143	5	0.03	115	0	0		180		0	0					T	58934640	G	T	58934640	5	4	140	1	0	0	0	0	0	0	1	0	8227	1014	35	3	2272	3	KIAA0586	14	58934640	Splice_Site	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	35403895	58934640	48414900	43	10100											
TDP1	55775	mdanderson.org	37	chr14	90499479	90499479	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtttcaaagtgaaacagaaGttcttcgctggcagccagga	11	8	2	2	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_018319	exon16	c.G1674T	p.K558N	ACAGAAGTTCTTC		106	5	0.05	69	0	0				14	0	0				T	90499479	G	T	90499479	3	4	140	1	0	0	0	0	1	0	0	0	15786	1020	36	3	1728	3	TDP1	14	90499479	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	31564839	90499479	16850061	44	10101											
TRMT61A	115708	mdanderson.org	37	chr14	104001019	104001019	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacaacgtgcgcactgtcaGcctgccaccgcccgacctgg	10	18	1	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_152307	exon4	c.G731T	p.S244I	CTGTCAGCCTGCC		67	10	0.15	35	3	0.0857142857				13	0	0				T	104001019	G	T	104001019	3	4	140	1	0	0	0	0	1	0	0	0	16629	971	34	2	741	2	TRMT61A	14	104001019	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	13501540	104001019	3348521	45	10102											
TMEM179	388021	mdanderson.org	37	chr14	105070822	105070822	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtgcgccaggcgtgcgcgGcggccagcagcagagacagg	19	13	0	1	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_207379	exon1	c.C257A	p.A86D	TGCGCGGCGGCCA		44	3	0.07	38	0	0				0	0					T	105070822	G	T	105070822	3	4	140	1	0	0	0	0	1	0	0	0	16155	1203	42	2	348	2	TMEM179	14	105070822	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	1069803	105070822	2278718	46	10103											
MSLN	10232	mdanderson.org	37	chr16	816065	816065	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgtgccctgcagagacagCctgtccttcaggcaagaagg	12	13	1	2	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_005823	exon12	c.C902T	p.A301V	AGACAGCCTGTCC		35	3	0.09	33	0	0				0	0					T	816065	C	T	816065	3	4	140	1	0	0	0	0	1	0	0	0	9928	739	26	2	940	2	MSLN	16	816065	Missense_Mutation	SNP	C	TCGA-ZM-AA05-01A-12D-A435-10		816065	89538688	47	10104											
MEFV	4210	broad.mit.edu	37	chr16	3304501	3304501	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctctagcgccctgcagggGccggggcttctcccgcccgg	14	19	2	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	MEFV,NS,carcinoma,-2,1	MEFV	NM_000243	exon2	c.C567A	p.G189G	GCAGGGGCCGGGG		38	4	0.11	29	2	0.0689655172		170	1	0	0					T	3304501	G	T	3304501	2	4	140	1	0	0	0	0	0	0	0	1	9508	1190	42	2		2	MEFV	16	3304501	Silent	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	2488436	3304501	87050252	48	10105											
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	3830851	3830851	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgagggttccaatgttacCagagttggagccatcgttca	12	9	1	2	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_004380	exon8	c.G1705A	p.G569S	TGTTACCAGAGTT		127	15	0.12	89	0	0				1	0	0				T	3830851	C	T	3830851	3	4	140	1	0	0	0	0	1	0	0	0	3884	594	21	3	5719	3	CREBBP	16	3830851	Missense_Mutation	SNP	C	TCGA-ZM-AA05-01A-12D-A435-10	526350	3830851	86523902	49	10106											
SH2B1	25970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	28883695	28883695	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aggcggggtgaatacgtcctCaccttcaacttccagggcaa	11	12	2	1	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_001145796	exon7	c.C1698T	p.L566L	CGTCCTCACCTTC		83	13	0.16	74	0	0				54	1	0.02				T	28883695	C	T	28883695	2	4	140	1	0	0	0	0	0	0	0	1	14280	813	29	3		3	SH2B1	16	28883695	Silent	SNP	C	TCGA-ZM-AA05-01A-12D-A435-10	25052844	28883695	61471058	50	10107											
GAS8	2622	mdanderson.org	37	chr16	90097758	90097758	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agctggaccgcgagcgggagGaacgaaactacttccagctg	14	11	0	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_001481	exon3	c.G142T	p.E48X	CGGGAGGAACGAA		44	3	0.07	43	0	0				1	0	0				T	90097758	G	T	90097758	4	4	140	1	0	0	0	0	0	1	0	0	6290	1175	41	3	152	3	GAS8	16	90097758	Nonsense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	61214063	90097758	256995	51	10108											
MYO1D	4642	broad.mit.edu	37	chr17	31105537	31105537	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gactggggttggtgatggccGcaatatactgcataatgtac	13	7	0	1	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	MYO1D	NM_015194	exon3	c.C359T	p.A120V	ATGGCCGCAATAT		279	4	0.01	221	0	0		93		2	0	0				A	31105537	G	A	31105537	3	1	140	1	0	0	0	0	1	0	0	0	10118	1087	38	1	2741	1	MYO1D	17	31105537	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10		31105537	50089673	52	10109											
AOC3	8639	broad.mit.edu	37	chr17	41004673	41004673	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttgaacagaaccagggccTccccctgcggcgacaccact	10	16	0	2	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	AOC3	NM_003734	exon1	c.T1313C	p.L438P	AGGGCCTCCCCCT		122	4	0.03	103	1	0.0097087379		88		1	0	0				C	41004673	T	C	41004673	3	2	140	1	0	0	0	0	1	0	0	0	724	1551	54	4	1315	4	AOC3	17	41004673	Missense_Mutation	SNP	T	TCGA-ZM-AA05-01A-12D-A435-10	9899136	41004673	40190537	53	10110											
KIF2B	84643	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr17	51901904	51901904	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaaactcacactggtgctcCgggactcctttataggccag	10	13	1	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	KIF2B,NS,carcinoma,0,2	KIF2B	NM_032559	exon1	c.C1510T	p.R504W	GTGCTCCGGGACT		95	4	0.04	58	0	0		0	2	0	0					T	51901904	C	T	51901904	3	4	140	1	0	0	0	0	1	0	0	0	8339	643	23	1	1512	1	KIF2B	17	51901904	Missense_Mutation	SNP	C	TCGA-ZM-AA05-01A-12D-A435-10	10897231	51901904	29293306	54	10111											
SDK2	54549	broad.mit.edu	37	chr17	71386453	71386453	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcggtggtcaccaccaaggCctcggcagcttctccccagc	10	18	2	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	SDK2	NM_001144952	exon29	c.G4165T	p.A1389S	CCAAGGCCTCGGC		36	6	0.17	54	2	0.037037037		219		0	0					A	71386453	C	A	71386453	3	1	140	1	0	0	0	0	1	0	0	0	14022	739	26	2	2421	2	SDK2	17	71386453	Missense_Mutation	SNP	C	TCGA-ZM-AA05-01A-12D-A435-10	19484549	71386453	9808757	55	10112											
LLGL2	3993	broad.mit.edu;mdanderson.org	37	chr17	73568068	73568068	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttcccgagcccctcgaaGtggcccatgatctgtcgaag	10	16	1	1	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	LLGL2	NM_004524	exon19	c.G2383T	p.V795L	CTCGAAGTGGCCC		35	3	0.09	20	0	0		155		66	0	0				T	73568068	G	T	73568068	3	4	140	1	0	0	0	0	1	0	0	0	8874	1029	36	3	2488	3	LLGL2	17	73568068	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	2181615	73568068	7627142	56	10113											
RAC3	5881	broad.mit.edu	37	chr17	79991663	79991663	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atccgcgcggtgctctgcccGcccccagtgaagaagccggg	14	16	1	2	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	RAC3	NM_005052	exon6	c.G537T	p.P179P	CTGCCCGCCCCCA		138	10	0.07	91	3	0.032967033		8		71	0	0				T	79991663	G	T	79991663	2	4	140	1	0	0	0	0	0	0	0	1	13027	1074	38	1		1	RAC3	17	79991663	Silent	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	6423595	79991663	1203547	57	10114											
TCEB3B	51224	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr18	44560885	44560885	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gcaggccccgcatgatttctCcctgatcaaagtaggggagt	12	11	2	2	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_016427	exon1	c.G751A	p.E251K	ATTTCTCCCTGAT		150	16	0.11	94	0	0				0	0					T	44560885	C	T	44560885	3	4	140	1	0	0	0	0	1	0	0	0	15741	864	30	3	1514	3	TCEB3B	18	44560885	Missense_Mutation	SNP	C	TCGA-ZM-AA05-01A-12D-A435-10		44560885	33516363	58	10115											
MED16	10025	hgsc.bcm.edu	37	chr19	879943	879943	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccagcagctcaccttcccGtggctgtcaatccccaccag	7	20	2	0	rs76403059	bycluster	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	MED16,colon,carcinoma,0,1	MED16	NM_005481	exon8	c.C1347G	p.H449Q	CTTCCCGTGGCTG		130	6	0.05	111	2	0.018018018		0	1	7	0	0				C	879943	G	C	879943	3	2	140	1	0	0	0	0	1	0	0	0	9483	1136	40	5	1322	5	MED16	19	879943	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10		879943	58249040	59	10116											
PCSK4	54760	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr19	1487795	1487795	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgctcaccggttctctttGctgggggtgtagcggggctg	16	11	2	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_017573	exon5	c.C582G	p.S194R	CTCTTTGCTGGGG		42	4	0.1	27	0	0				1	0	0				C	1487795	G	C	1487795	3	2	140	1	0	0	0	0	1	0	0	0	11648	1310	46	5	1729	5	PCSK4	19	1487795	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	607852	1487795	57641188	60	10117											
ILF3	3609	bcgsc.ca;mdanderson.org	37	chr19	10798068	10798068	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgggaatgccagtggcggTggcggcgggggcggtggtgg	24	7	1	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	ILF3	NM_017620	exon18	c.T2118G	p.G706G	TGGCGGTGGCGGC		111	16	0.14	81	5	0.0617283951		99		5	0	0				G	10798068	T	G	10798068	2	3	140	1	0	0	0	0	0	0	0	1	7755	1683	59	4		4	ILF3	19	10798068	Silent	SNP	T	TCGA-ZM-AA05-01A-12D-A435-10	9310273	10798068	48330915	61	10118											
TECR	9524	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr19	14675087	14675087	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	catggcactatgcctttgcgCaacatcttcaaggtgagagc	10	11	2	1	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	TECR,NS,carcinoma,+1,1	TECR	NM_138501	exon7	c.C477A	p.R159R	TTTGCGCAACATC		50	6	0.12	36	0	0		1	1	217	32	0.15				A	14675087	C	A	14675087	2	1	140	1	0	0	0	0	0	0	0	1	15803	697	25	2		2	TECR	19	14675087	Silent	SNP	C	TCGA-ZM-AA05-01A-12D-A435-10	3877019	14675087	44453896	62	10119											
SPRED3	399473	hgsc.bcm.edu;mdanderson.org	37	chr19	38882866	38882866	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccaggctcactcacccccTcctcctcctcctcctcctcc	2	27	2	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	SPRED3_ENST00000396877,bladder,carcinoma,-1,2	SPRED3_ENST00000396877	NM_001042522	exon3	c.T361C	p.S121P	ACCCCCTCCTCCT		64	4	0.06	54	1	0.0185185185		-1	2	0	0					C	38882866	T	C	38882866	3	2	140	1	0	0	0	0	1	0	0	0	15149	1551	54	4	371	4	SPRED3	19	38882866	Missense_Mutation	SNP	T	TCGA-ZM-AA05-01A-12D-A435-10	24207779	38882866	20246117	63	10120											
PAFAH1B3	5050	mdanderson.org	37	chr19	42806188	42806188	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtcagccacgaaccgatGgtgctgcgggagcgcgcgag	17	12	1	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_002573	exon2	c.C82A	p.H28N	ACCGATGGTGCTG		55	3	0.05	37	0	0				13	0	0				T	42806188	G	T	42806188	3	4	140	1	0	0	0	0	1	0	0	0	11432	1348	47	3	629	3	PAFAH1B3	19	42806188	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	3923322	42806188	16322795	64	10121											
MEGF8	1954	mdanderson.org	37	chr19	42838351	42838351	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcctactgtggcagccacGgcacctgcgcctcggtgagc	13	16	0	1	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	MEGF8_ENST00000334370,NS,carcinoma,-1,2	MEGF8_ENST00000334370	NM_001271938	exon3	c.G544T	p.G182C	AGCCACGGCACCT		35	3	0.09	33	0	0		-1	2	0	0					T	42838351	G	T	42838351	3	4	140	1	0	0	0	0	1	0	0	0	9512	1116	39	1	554	1	MEGF8	19	42838351	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	32163	42838351	16290632	65	10122											
KLK12	43849	ucsc.edu;bcgsc.ca	37	chr19	51534068	51534068	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggcatcctgccccgggacGccgcctgcacacaccatgtt	10	18	0	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	KLK12	NM_145895	exon4	c.C307T	p.R103C	CGGGACGCCGCCT		37	4	0.11	67	0	0		30		0	0					A	51534068	G	A	51534068	3	1	140	1	0	0	0	0	1	0	0	0	8442	1087	38	1	249	1	KLK12	19	51534068	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	8695717	51534068	7594915	66	10123											
ZNF880	400713	broad.mit.edu;mdanderson.org	37	chr19	52888125	52888125	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcccatctactaattcacaCtggagagaaaccttacaaat	5	11	2	1	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	ZNF880	NM_001145434	exon4	c.C1292T	p.T431I	TTCACACTGGAGA		56	6	0.11	67	0	0		45		1	0	0				T	52888125	C	T	52888125	3	4	140	1	0	0	0	0	1	0	0	0	18239	565	20	3	1306	3	ZNF880	19	52888125	Missense_Mutation	SNP	C	TCGA-ZM-AA05-01A-12D-A435-10	1354057	52888125	6240858	67	10124											
NINL	22981	broad.mit.edu	37	chr20	25436407	25436407	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttctgtggctttcagctGtttctcatgttcttcctgcc	7	13	5	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	NINL	NM_025176	exon23	c.C3859A	p.Q1287K	TCAGCTGTTTCTC		153	7	0.05	118	3	0.0254237288		148		4	1	0.25				T	25436407	G	T	25436407	3	4	140	1	0	0	0	0	1	0	0	0	10466	1386	48	3	297	3	NINL	20	25436407	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10		25436407	37589113	68	10125											
SERINC3	10955	broad.mit.edu	37	chr20	43142664	43142664	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagcaaacatgaggcaccGctgcagaggcatggaacctg	12	12	0	2	rs370153515	alternate_allele	TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	SERINC3	NM_006811	exon2	c.C57A	p.S19R	GGCACCGCTGCAG		116	4	0.03	94	0	0		42		0	0					T	43142664	G	T	43142664	3	4	140	1	0	0	0	0	1	0	0	0	14134	1078	38	1	1400	1	SERINC3	20	43142664	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	17706257	43142664	19882856	69	10126											
SLC2A10	81031	broad.mit.edu	37	chr20	45354027	45354027	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatttccctctcctccatgGcttgctgtatctacgtgtca	6	15	3	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	SLC2A10	NM_030777	exon2	c.G352A	p.A118T	TCCATGGCTTGCT		58	3	0.05	52	0	0		75		0	0					A	45354027	G	A	45354027	3	1	140	1	0	0	0	0	1	0	0	0	14593	1203	42	2	358	2	SLC2A10	20	45354027	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	2211363	45354027	17671493	70	10127											
SPO11	23626	mdanderson.org	37	chr20	55904934	55904934	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctgccctcatggcctttgCacctatggggcccgaggcct	12	15	2	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	NM_012444	exon1	c.C11T	p.A4V	CCTTTGCACCTAT		55	3	0.05	52	0	0				0	0					T	55904934	C	T	55904934	3	4	140	1	0	0	0	0	1	0	0	0	15132	710	25	2	13	2	SPO11	20	55904934	Missense_Mutation	SNP	C	TCGA-ZM-AA05-01A-12D-A435-10	10550907	55904934	7120586	71	10128											
BAGE	85319	broad.mit.edu	37	chr21	11083997	11083998	+	RNA	INS	-	-	G													catctatatatgatttgtgtINSttgtgtgtttgtgtgtgtgt					rs370113266		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	TTTGTGTTTGTGT		6	2	0.33	4	0	0				0	0					G	11083998	-	G	11083997	6	5	140	0	1	1	1	0	0	0	0	0	1289	1740	60	0		0	BAGE	21	11083997	RNA	INS	-	TCGA-ZM-AA05-01A-12D-A435-10		11083997	37045898	72	10129	22	2									
BAGE	85319	broad.mit.edu	37	chr21	11083998	11083999	+	RNA	INS	-	-	GTG													atctatatatgatttgtgttINStgtgtgtttgtgtgtgtgta					novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	.	.	.	.	.	TTGTGTTTGTGTG		6	2	0.33	4	0	0				0	0					GTG	11083999	-	GTG	11083998	6	5	140	0	1	1	1	0	0	0	0	0	1289	1856	64	0		0	BAGE	21	11083998	RNA	INS	-	TCGA-ZM-AA05-01A-12D-A435-10	1	11083998	37045897	73	10130	22	2									
SHROOM2	357	broad.mit.edu	37	chrX	9863376	9863376	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggggagcggctggcagggTccccggccctgtgtgcaggg	20	12	0	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	SHROOM2	NM_001649	exon4	c.T1428G	p.G476G	GCAGGGTCCCCGG		69	12	0.17	54	5	0.0925925926		139		1	0	0				G	9863376	T	G	9863376	2	3	140	1	0	0	0	0	0	0	0	1	14348	1654	58	4		4	SHROOM2	23	9863376	Silent	SNP	T	TCGA-ZM-AA05-01A-12D-A435-10		9863376	145407184	74	10131											
FOXP3	50943	broad.mit.edu	37	chrX	49113925	49113925	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgagggagaagaccccaGtggcggtggtgggtggtgtg	20	7	0	3	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	FOXP3	NM_014009	exon4	c.C413A	p.T138N	ACCCCAGTGGCGG		224	5	0.02	128	0	0		26		0	0					T	49113925	G	T	49113925	3	4	140	1	0	0	0	0	1	0	0	0	6061	1029	36	3	918	3	FOXP3	23	49113925	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	39250549	49113925	106156635	75	10132											
ARHGAP4	393	broad.mit.edu	37	chrX	153187251	153187251	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcagctgctcgctcagctGccagcgcatctctgtggggg	15	14	2	0	novel		TCGA-ZM-AA05-01A-12D-A435-10	TCGA-ZM-AA05-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7861cef-4a7b-40e7-8a95-da3755f13c76	0d13d0e4-a10b-4704-b72f-3297e33db2fd	.	ARHGAP4	NM_001666	exon2	c.C79A	p.Q27K	TCAGCTGCCAGCG		35	7	0.2	17	1	0.0588235294		103		7	0	0				T	153187251	G	T	153187251	3	4	140	1	0	0	0	0	1	0	0	0	882	1328	46	2	2969	2	ARHGAP4	23	153187251	Missense_Mutation	SNP	G	TCGA-ZM-AA05-01A-12D-A435-10	104073326	153187251	2083309	76	10133											
KIF17	57576	broad.mit.edu	37	chr1	21016763	21016763	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtgatgtcttcctccagCctggcccgagactcctgctc	10	16	1	2	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	KIF17	NM_020816	exon7	c.G1299T	p.R433S	CTCCAGCCTGGCC		133	6	0.05	121	1	0.0082644628		130		4	0	0				A	21016763	C	A	21016763	3	1	141	1	0	0	0	0	1	0	0	0	8320	738	26	2	1826	2	KIF17	1	21016763	Missense_Mutation	SNP	C	TCGA-ZM-AA06-01A-12D-A435-10		21016763	228233858	1	10134											
SPOCD1	90853	broad.mit.edu	37	chr1	32259795	32259795	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtgtcctctgatgcgatGggcagggcctgtgggctgca	18	9	1	1	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	SPOCD1,NS,carcinoma,-1,1	SPOCD1	NM_144569	exon11	c.C2313A	p.P771P	TGCGATGGGCAGG		251	5	0.02	166	0	0		109	1	4	0	0				T	32259795	G	T	32259795	2	4	141	1	0	0	0	0	0	0	0	1	15133	1335	47	3		3	SPOCD1	1	32259795	Silent	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	11243032	32259795	216990826	2	10135											
SERBP1	26135	broad.mit.edu	37	chr1	67895862	67895862	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccaacgccgcccccgccgGcttcttttttcttgttctct	6	19	3	0	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	SERBP1	NM_015640	exon1	c.C122A	p.A41D	CCGCCGGCTTCTT		139	6	0.04	119	3	0.025210084		31		57	0	0				T	67895862	G	T	67895862	3	4	141	1	0	0	0	0	1	0	0	0	14128	1203	42	2	1136	2	SERBP1	1	67895862	Missense_Mutation	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	35636067	67895862	181354759	3	10136											
ABCD3	5825	broad.mit.edu	37	chr1	94964163	94964163	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttttttttttcaggttcgAtctggggctaatgttctaat	8	5	3	0	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	ABCD3	NM_002858	exon17	c.A1392T	p.R464R	GGTTCGATCTGGG		174	14	0.08	140	7	0.05		62		0	0					T	94964163	A	T	94964163	2	4	141	1	0	0	0	0	0	0	0	1	62	320	12	5		5	ABCD3	1	94964163	Silent	SNP	A	TCGA-ZM-AA06-01A-12D-A435-10	27068301	94964163	154286458	4	10137											
ADAR	103	broad.mit.edu	37	chr1	154574388	154574388	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgagactgcaataaaagGctcaagaagatcttctgaga	10	7	3	4	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	ADAR	NM_001111	exon2	c.C730A	p.P244T	TAAAAGGCTCAAG		172	6	0.03	152	0	0		113		11	0	0				T	154574388	G	T	154574388	3	4	141	1	0	0	0	0	1	0	0	0	280	1203	42	2	3006	2	ADAR	1	154574388	Missense_Mutation	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	59610225	154574388	94676233	5	10138											
RGPD2	729857	broad.mit.edu	37	chr2	88125234	88125234	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtaccgctccccgtaggcTttgctgcgcctcatcgcacc	10	17	1	0	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	RGPD2	NM_001078170	exon1	c.A15G	p.K5K	GTAGGCTTTGCTG		79	10	0.13	56	1	0.0178571429		14		0	0					C	88125234	T	C	88125234	2	2	141	1	0	0	0	0	0	0	0	1	13337	1606	56	4		4	RGPD2	2	88125234	Silent	SNP	T	TCGA-ZM-AA06-01A-12D-A435-10		88125234	155074139	6	10139											
RBMS1	5937	hgsc.bcm.edu;mdanderson.org	37	chr2	161223862	161223862	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tattactgctggtggtgctgGgactgggaggggccatgggg	20	6	0	0	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_016836	exon2	c.C116A	p.P39H	GTGCTGGGACTGG		64	4	0.06	63	0	0				1	0	0				T	161223862	G	T	161223862	3	4	141	1	0	0	0	0	1	0	0	0	13199	1232	43	3	1152	3	RBMS1	2	161223862	Missense_Mutation	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	73098628	161223862	81975511	7	10140											
RAPH1	65059	broad.mit.edu	37	chr2	204322299	204322299	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgccatctcagctgtttctTttttccccaaaagataattc	4	12	2	1	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	RAPH1	NM_203365	exon10	c.A1268G	p.K423R	GTTTCTTTTTTCC		87	3	0.03	61	2	0.0327868852		118		0	0					C	204322299	T	C	204322299	3	2	141	1	0	0	0	0	1	0	0	0	13101	1841	64	4	2675	4	RAPH1	2	204322299	Missense_Mutation	SNP	T	TCGA-ZM-AA06-01A-12D-A435-10	43098437	204322299	38877074	8	10141											
MAP4	4134	broad.mit.edu;mdanderson.org	37	chr3	47963340	47963340	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaagaccaaatctgccagGtcatcatcatggtacatctt	8	10	5	1	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	MAP4	NM_001134364	exon5	c.C444A	p.D148E	TGCCAGGTCATCA		63	4	0.06	99	0	0		176		9	0	0				T	47963340	G	T	47963340	3	4	141	1	0	0	0	0	1	0	0	0	9307	1252	44	3	4433	3	MAP4	3	47963340	Missense_Mutation	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10		47963340	150059090	9	10142											
NT5DC2	64943	mdanderson.org	37	chr3	52558632	52558632	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagttgagcaggcagctgaGggaggccatgtagaggtcag	18	6	1	3	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001134231	exon14	c.C1528A	p.L510I	AGCTGAGGGAGGC		51	3	0.06	45	0	0				829	1	0				T	52558632	G	T	52558632	3	4	141	1	0	0	0	0	1	0	0	0	10738	1000	35	3	149	3	NT5DC2	3	52558632	Missense_Mutation	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	4595292	52558632	145463798	10	10143											
CHCHD6	84303	broad.mit.edu;bcgsc.ca	37	chr3	126571534	126571534	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagagctaagacgccgtgaCaccttctacaaggagcagct	11	12	1	3	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	CHCHD6	NM_032343	exon5	c.C456T	p.D152D	CCGTGACACCTTC		92	28	0.3	94	2	0.0212765957		18		14	10	0.71				T	126571534	C	T	126571534	2	4	141	1	0	0	0	0	0	0	0	1	3342	477	17	3		3	CHCHD6	3	126571534	Silent	SNP	C	TCGA-ZM-AA06-01A-12D-A435-10	74012902	126571534	71450896	11	10144											
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	142186852	142186852	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acttctctaaggattttttcAtatgaatagctttattgagg	7	5	2	2	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001184	exon39	c.T6611C	p.M2204T	TTTTTCATATGAA		48	21	0.44	45	0	0				2	2	1				G	142186852	A	G	142186852	3	3	141	1	0	0	0	0	1	0	0	0	1202	217	8	4	1359	4	ATR	3	142186852	Missense_Mutation	SNP	A	TCGA-ZM-AA06-01A-12D-A435-10	15615318	142186852	55835578	12	10145											
TP63	8626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	189597936	189597936	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	tgacgtcttctttagacattCcaagcccccaaaccgatcag	6	14	3	2	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001114979	exon11	c.C1433G	p.S478C	GACATTCCAAGCC		129	33	0.26	129	0	0				0	0					G	189597936	C	G	189597936	3	3	141	1	0	0	0	0	1	0	0	0	16452	855	30	5	1521	5	TP63	3	189597936	Missense_Mutation	SNP	C	TCGA-ZM-AA06-01A-12D-A435-10	47411084	189597936	8424494	13	10146											
ZDHHC11	79844	mdanderson.org	37	chr5	840644	840644	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aagatgagcagctggcccagGtgcaccaagccaagaaagtc	12	11	0	3	rs200038670	bycluster	TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_024786	exon5	c.C750G	p.H250Q	GCCCAGGTGCACC		26	2	0.08	28	1	0.0357142857	0.001			15	3	0.2				C	840644	G	C	840644	3	2	141	1	0	0	0	0	1	0	0	0	17658	1252	44	5	520	5	ZDHHC11	5	840644	Missense_Mutation	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10		840644	180074616	14	10147											
IRX2	153572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	2749803	2749803	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcgtggcgttcttgcggtaCgcggggtcgttgagctggta	18	9	1	1	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	IRX2,NS,carcinoma,0,1	IRX2	NM_001134222	exon2	c.G348A	p.A116A	GCGGTACGCGGGG		52	16	0.31	57	0	0		0	1	1	0	0				T	2749803	C	T	2749803	2	4	141	1	0	0	0	0	0	0	0	1	7887	523	19	1		1	IRX2	5	2749803	Silent	SNP	C	TCGA-ZM-AA06-01A-12D-A435-10	1909159	2749803	178165457	15	10148											
DMGDH	29958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	78347182	78347182	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcccatgttccatctgaccTggctttcagagaagttactg	9	11	2	2	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_013391	exon5	c.A673C	p.R225R	CTGACCTGGCTTT		112	36	0.32	105	0	0				0	0					G	78347182	T	G	78347182	2	3	141	1	0	0	0	0	0	0	0	1	4609	1579	55	4		4	DMGDH	5	78347182	Silent	SNP	T	TCGA-ZM-AA06-01A-12D-A435-10	75597379	78347182	102568078	16	10149											
NDST1	3340	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	149915275	149915277	+	In_Frame_Del	DEL	CCA	CCA	-													tccctaggagcatggcattcCcacagacatggggtatgcag					novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	CCA	CCA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	NDST1	NM_001543	exon6	c.1264_1266del	p.422_422del	GCATTCCCACAGA		97	28	0.29	106	0	0		79		3	0	0				-	149915277	CCA	-	149915275	7	5	141	1	0	1	0	1	0	0	0	0	10301	623	22	0	1283	0	NDST1	5	149915275	In_Frame_Del	DEL	CCA	TCGA-ZM-AA06-01A-12D-A435-10	71568093	149915275	30999985	17	10150											
F13A1	2162	mdanderson.org	37	chr6	6248642	6248642	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acaggcaagtgtccaggatgCcatcttcaaactatttggag	10	9	2	0	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_000129	exon6	c.G701A	p.G234D	AGGATGCCATCTT		36	3	0.08	32	0	0				0	0					T	6248642	C	T	6248642	3	4	141	1	0	0	0	0	1	0	0	0	5368	739	26	2	1537	2	F13A1	6	6248642	Missense_Mutation	SNP	C	TCGA-ZM-AA06-01A-12D-A435-10		6248642	164866425	18	10151											
DPCR1	135656	mdanderson.org	37	chr6	30920763	30920763	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaggtctcctatatgatgCggacacgccgcacactaacc	8	15	1	1	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_080870	exon3	c.C4051T	p.R1351W	ATGATGCGGACAC		81	4	0.05	80	1	0.0125				0	0					T	30920763	C	T	30920763	3	4	141	1	0	0	0	0	1	0	0	0	4739	759	27	1	4061	1	DPCR1	6	30920763	Missense_Mutation	SNP	C	TCGA-ZM-AA06-01A-12D-A435-10	24672121	30920763	140194304	19	10152											
GPR6	0	broad.mit.edu	37	chr6	110300642	110300642	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgcacgcccatgttcgtGctggtaggcagcctggccac	13	15	0	0	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	GPR6,caecum,carcinoma,+2,1	GPR6	NM_005284	exon1	c.G327T	p.V109V	GTTCGTGCTGGTA		54	6	0.11	45	0	0		46	1	0	0					T	110300642	G	T	110300642	2	4	141	1	0	0	0	0	0	0	0	1	6740	1306	46	2		2	GPR6	6	110300642	Silent	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	79379879	110300642	60814425	20	10153											
MUC17	140453	hgsc.bcm.edu	37	chr7	100679221	100679221	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accagcatagcaatctcaacGcctagtgaaggaagcactgc	9	12	1	1	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001040105	exon3	c.G4524T	p.T1508T	CTCAACGCCTAGT		73	6	0.08	90	0	0				0	0					T	100679221	G	T	100679221	2	4	141	1	0	0	0	0	0	0	0	1	10021	1074	38	1		1	MUC17	7	100679221	Silent	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10		100679221	58459442	21	10154											
MDFIC	29969	mdanderson.org	37	chr7	114563096	114563096	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcggagcggcccatgtccgGcgcgggcgaagccctcgctc	17	16	0	0	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001166346	exon2	c.G335T	p.G112V	TGTCCGGCGCGGG		12	2	0.17	22	0	0				0	0					T	114563096	G	T	114563096	3	4	141	1	0	0	0	0	1	0	0	0	9454	1203	42	2	341	2	MDFIC	7	114563096	Missense_Mutation	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	13883875	114563096	44575567	22	10155											
EPHB6	2051	bcgsc.ca;mdanderson.org	37	chr7	142562074	142562074	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctcctcctcCtcttcttcctctgcagcgtg	4	21	3	0	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	EPHB6	NM_004445	exon7	c.C516T	p.S172S	CTCCTCCTCTTCT		106	5	0.05	71	1	0.014084507		168		4	0	0				T	142562074	C	T	142562074	2	4	141	1	0	0	0	0	0	0	0	1	5206	668	24	3		3	EPHB6	7	142562074	Silent	SNP	C	TCGA-ZM-AA06-01A-12D-A435-10	27998978	142562074	16576589	23	10156											
KCNH2	3757	hgsc.bcm.edu;mdanderson.org	37	chr7	150645544	150645544	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcctcacccttgtccgtgcGcctgcggaaggacaacttgc	11	16	1	0	rs199473433	alternate_allele	TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	KCNH2,NS,adenocarcinoma,+1,1	KCNH2	NM_000238	exon11	c.C2680A	p.R894S	CCGTGCGCCTGCG		30	2	0.07	23	0	0		1	1	2	0	0				T	150645544	G	T	150645544	3	4	141	1	0	0	0	0	1	0	0	0	8075	1087	38	1	819	1	KCNH2	7	150645544	Missense_Mutation	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	8083470	150645544	8493119	24	10157											
UBQLN1	29979	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	86294939	86294939	+	Frame_Shift_Del	DEL	T	T	-													aagctactcagacctgcaagTcccccaaggccacctaagag					novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	UBQLN1	NM_053067	exon4	c.463delC	p.L155fs	TGCAAGTCCCCCA		83	19	0.23	87	0	0		49		3	0	0				-	86294939	T	-	86294939	7	5	141	1	0	1	0	1	0	0	0	0	16956	1654	58	0	1339	0	UBQLN1	9	86294939	Frame_Shift_Del	DEL	T	TCGA-ZM-AA06-01A-12D-A435-10		86294939	54918492	25	10158	23	3									
UBQLN1	29979	bcgsc.ca	37	chr9	86294940	86294940	+	Missense_Mutation	SNP	C	C	A													agctactcagacctgcaagtCccccaaggccacctaagagg					novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	UBQLN1	NM_053067	exon4	c.G461T	p.G154V	GCAAGTCCCCCAA		82	19	0.23	86	0	0		49		3	0	0				A	86294940	C	A	86294940	3	1	141	1	0	0	0	0	1	0	0	0	16956	855	30	3	1340	3	UBQLN1	9	86294940	Missense_Mutation	SNP	C	TCGA-ZM-AA06-01A-12D-A435-10	1	86294940	54918491	26	10159	23	3									
UBQLN1	29979	hgsc.bcm.edu	37	chr9	86294943	86294943	+	Frame_Shift_Del	DEL	C	C	-													tactcagacctgcaagtcccCcaaggccacctaagaggata					novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	UBQLN1	NM_053067	exon4	c.459delG	p.G153fs	AGTCCCCCAAGGC		85	0	0	84	0	0		49		5	0	0				-	86294943	C	-	86294943	7	5	141	1	0	1	0	1	0	0	0	0	16956	623	22	0	1343	0	UBQLN1	9	86294943	Frame_Shift_Del	DEL	C	TCGA-ZM-AA06-01A-12D-A435-10	3	86294943	54918488	27	10160	23	3									
FBP2	8789	mdanderson.org	37	chr9	97325644	97325644	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgcccttagggctcttctGgttggctgggtacaggaaga	14	9	2	1	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_003837	exon6	c.C805A	p.Q269K	TCTTCTGGTTGGC		56	3	0.05	64	0	0				0	0					T	97325644	G	T	97325644	3	4	141	1	0	0	0	0	1	0	0	0	5738	1357	47	3	222	3	FBP2	9	97325644	Missense_Mutation	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	11030701	97325644	43887787	28	10161											
FIBCD1	84929	bcgsc.ca	37	chr9	133805022	133805022	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcgtgccatgccccttccGcagccccatgcactccgtct	8	20	1	0	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	FIBCD1	NM_001145106	exon3	c.C484A	p.R162R	CCTTCCGCAGCCC		44	4	0.09	55	0	0		34		1	0	0				T	133805022	G	T	133805022	2	4	141	1	0	0	0	0	0	0	0	1	5916	1086	38	1		1	FIBCD1	9	133805022	Silent	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	36479378	133805022	7408409	29	10162											
SETX	23064	mdanderson.org	37	chr9	135203904	135203904	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gtgagtttctcaagactcagGattctttcatcatcatcatc	6	10	7	2	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_015046	exon10	c.C3081A	p.I1027I	ACTCAGGATTCTT		43	3	0.07	48	0	0				0	0					T	135203904	G	T	135203904	2	4	141	1	0	0	0	0	0	0	0	1	14194	1164	41	3		3	SETX	9	135203904	Silent	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	1398882	135203904	6009527	30	10163											
ENTPD2	954	ucsc.edu;bcgsc.ca	37	chr9	139944978	139944978	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccctcggccagcaggggtGgaagccgtgggtctggggga	20	11	1	0	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	ENTPD2	NM_203468	exon6	c.C787A	p.H263N	AGGGGTGGAAGCC		30	4	0.13	39	0	0		30		0	0					T	139944978	G	T	139944978	3	4	141	1	0	0	0	0	1	0	0	0	5167	1348	47	3	716	3	ENTPD2	9	139944978	Missense_Mutation	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	4741074	139944978	1268453	31	10164											
PDDC1	347862	mdanderson.org	37	chr11	775093	775093	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggccacctgcaggttgaaGgcggtgctggccatcgtgaa	16	10	0	2	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_182612	exon2	c.C114A	p.A38A	GTTGAAGGCGGTG		39	3	0.08	53	1	0.0188679245				0	0					T	775093	G	T	775093	2	4	141	1	0	0	0	0	0	0	0	1	11675	987	35	3		3	PDDC1	11	775093	Silent	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10		775093	134231423	32	10165											
FAM76B	143684	mdanderson.org	37	chr11	95521721	95521721	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tacaataggatgtgcaatccGacattcctgtaataagacaa	7	8	0	1	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_144664	exon2	c.C94A	p.R32R	CAATCCGACATTC		40	3	0.08	30	0	0				0	0					T	95521721	G	T	95521721	2	4	141	1	0	0	0	0	0	0	0	1	5656	1057	37	1		1	FAM76B	11	95521721	Silent	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	94746628	95521721	39484795	33	10166											
CBL	867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	119149218	119149218	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatcttttgcttcttctgcAggaatcagaaggtcagggct	10	9	5	1	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	CBL,colon,carcinoma,0,7	CBL	NM_005188	exon9	c.1228-2A>G	.	TTCTGCAGGAATC		88	46	0.52	159	0	0		0	7	1	1	1				G	119149218	A	G	119149218	5	3	141	1	0	0	0	0	0	0	1	0	2718	202	7	4	1260	4	CBL	11	119149218	Splice_Site	SNP	A	TCGA-ZM-AA06-01A-12D-A435-10	23627497	119149218	15857298	34	10167											
FBXL14	144699	broad.mit.edu	37	chr12	1703090	1703090	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaggtgcagcttggcctccAccccccgccacaccgacttg	10	19	0	0	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	FBXL14	NM_152441	exon1	c.T143G	p.V48G	GCCTCCACCCCCC		39	21	0.54	18	8	0.4444444444		19		0	0					C	1703090	A	C	1703090	3	2	141	1	0	0	0	0	1	0	0	0	5742	159	6	4	1121	4	FBXL14	12	1703090	Missense_Mutation	SNP	A	TCGA-ZM-AA06-01A-12D-A435-10		1703090	132148805	35	10168											
GPR162	27239	broad.mit.edu	37	chr12	6933751	6933751	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggggaccaaagcgggtggGccaggggccttgggtacccg	21	10	0	0	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	GPR162,colon,carcinoma,+1,1	GPR162	NM_019858	exon2	c.G687T	p.G229G	GGGTGGGCCAGGG		103	5	0.05	54	1	0.0185185185		55	1	0	0					T	6933751	G	T	6933751	2	4	141	1	0	0	0	0	0	0	0	1	6705	1190	42	2		2	GPR162	12	6933751	Silent	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	5230661	6933751	126918144	36	10169											
BAZ2A	11176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	56995804	56995804	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggacttaagatgcctaggTtgcatagacccgggcttagt	14	8	0	2	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_013449	exon20	c.A3603G	p.Q1201Q	CCTAGGTTGCATA		109	17	0.16	100	0	0				8	1	0.13				C	56995804	T	C	56995804	2	2	141	1	0	0	0	0	0	0	0	1	1329	1722	60	4		4	BAZ2A	12	56995804	Silent	SNP	T	TCGA-ZM-AA06-01A-12D-A435-10	50062053	56995804	76856091	37	10170											
NACA	4666	broad.mit.edu	37	chr12	57111746	57111746	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgggggcccctttgggggAtggggtagctagacctcctt	17	9	0	1	rs2958150		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	NACA	.	.	.	.	TGGGGGATGGGGT		179	13	0.07	128	9	0.0703125		131		0	0					G	57111746	A	G	57111746	3	3	141	1	0	0	0	0	1	0	0	0	10180	333	12	4	2696	4	NACA	12	57111746	Missense_Mutation	SNP	A	TCGA-ZM-AA06-01A-12D-A435-10	115942	57111746	76740149	38	10171											
STOML3	161003	mdanderson.org	37	chr13	39544325	39544325	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gttcatggtgtctttacctgGatgctatgggcgatctcttc	11	9	3	0	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_145286	exon5	c.C513A	p.I171I	TACCTGGATGCTA		125	5	0.04	133	0	0				0	0					T	39544325	G	T	39544325	2	4	141	1	0	0	0	0	0	0	0	1	15370	1164	41	3		3	STOML3	13	39544325	Silent	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10		39544325	75625553	39	10172											
EDNRB	1910	mdanderson.org	37	chr13	78492307	78492307	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgatcaagatattgggaccGtttcgcatgcacttgttctt	10	9	2	1	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	EDNRB_ENST00000377211,NS,carcinoma,0,2	EDNRB_ENST00000377211	NM_001201397	exon2	c.C672T	p.N224N	GGGACCGTTTCGC		85	4	0.05	98	0	0		0	2	0	0					A	78492307	G	A	78492307	2	1	141	1	0	0	0	0	0	0	0	1	4946	1136	40	1		1	EDNRB	13	78492307	Silent	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	38947982	78492307	36677571	40	10173											
PSMC1	5700	broad.mit.edu	37	chr14	90735759	90735759	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agatatgactccaattctggTggtgagagagaaattcagcg	12	6	2	4	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	PSMC1	NM_002802	exon9	c.T900G	p.G300G	TTCTGGTGGTGAG		34	10	0.29	33	3	0.0909090909		27		60	0	0				G	90735759	T	G	90735759	2	3	141	1	0	0	0	0	0	0	0	1	12733	1683	59	4		4	PSMC1	14	90735759	Silent	SNP	T	TCGA-ZM-AA06-01A-12D-A435-10		90735759	16613781	41	10174											
BCL11B	64919	hgsc.bcm.edu	37	chr14	99641568	99641568	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctcctcctcCtcgtcctcctcctccggctc	3	25	0	0	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	BCL11B,colon,carcinoma,0,1	BCL11B	NM_138576	exon4	c.G1605C	p.E535D	CTCCTCCTCGTCC		31	4	0.13	21	0	0		0	1	0	0					G	99641568	C	G	99641568	3	3	141	1	0	0	0	0	1	0	0	0	1362	680	24	5	1083	5	BCL11B	14	99641568	Missense_Mutation	SNP	C	TCGA-ZM-AA06-01A-12D-A435-10	8905809	99641568	7707972	42	10175											
DYNC1H1	1778	hgsc.bcm.edu;mdanderson.org	37	chr14	102505463	102505463	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaacctgaagagagaggctGcagaggtcaccaggaaagtt	14	7	1	5	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001376	exon60	c.G11332T	p.A3778S	GAGGCTGCAGAGG		86	4	0.05	63	0	0				24	0	0				T	102505463	G	T	102505463	3	4	141	1	0	0	0	0	1	0	0	0	4867	1319	46	2	11570	2	DYNC1H1	14	102505463	Missense_Mutation	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	2863895	102505463	4844077	43	10176											
IFT140	9742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	1634408	1634408	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttcactgccagcaggttcTtcctggaaccccacttcatt	7	14	3	0	rs369998823		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_014714	exon11	c.A1169G	p.K390R	AGGTTCTTCCTGG		25	5	0.2	27	0	0				3	1	0.33				C	1634408	T	C	1634408	3	2	141	1	0	0	0	0	1	0	0	0	7599	1609	56	4	3303	4	IFT140	16	1634408	Missense_Mutation	SNP	T	TCGA-ZM-AA06-01A-12D-A435-10		1634408	88720345	44	10177											
PSMB10	5699	broad.mit.edu	37	chr16	67969561	67969561	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcggtccagtcaggtctacGccgcccacgatcagcgatgc	12	15	3	0	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	PSMB10	NM_002801	exon5	c.C423A	p.G141G	GTCTACGCCGCCC		136	5	0.04	65	0	0		19		274	0	0				T	67969561	G	T	67969561	2	4	141	1	0	0	0	0	0	0	0	1	12723	1074	38	1		1	PSMB10	16	67969561	Silent	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	66335153	67969561	22385192	45	10178											
SGSM2	9905	mdanderson.org	37	chr17	2266364	2266364	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctgctgatgagctggtccAgcggcaccgcatccggggtc	14	14	1	2	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001098509	exon6	c.A608G	p.Q203R	TGGTCCAGCGGCA		42	3	0.07	47	0	0				14	0	0				G	2266364	A	G	2266364	3	3	141	1	0	0	0	0	1	0	0	0	14276	188	7	4	630	4	SGSM2	17	2266364	Missense_Mutation	SNP	A	TCGA-ZM-AA06-01A-12D-A435-10		2266364	78928846	46	10179											
CAMTA2	23125	mdanderson.org	37	chr17	4883099	4883099	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agttctcccataaggtctggGaatgatgaaagactgaaggg	13	6	2	4	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001171167	exon9	c.C1587A	p.F529L	GTCTGGGAATGAT		51	3	0.06	62	0	0				16	0	0				T	4883099	G	T	4883099	3	4	141	1	0	0	0	0	1	0	0	0	2632	1165	41	3	2200	3	CAMTA2	17	4883099	Missense_Mutation	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	2616735	4883099	76312111	47	10180											
MYH3	4621	mdanderson.org	37	chr17	10533025	10533025	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgagcctttcggaatttGgtgagatgagcattggcttg	14	6	0	3	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	MYH3,NS,carcinoma,0,1	MYH3	NM_002470	exon40	c.C5685A	p.T1895T	GAATTTGGTGAGA		51	3	0.06	79	0	0		0	1	79	0	0				T	10533025	G	T	10533025	2	4	141	1	0	0	0	0	0	0	0	1	10083	1335	47	3		3	MYH3	17	10533025	Silent	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	5649926	10533025	70662185	48	10181											
NOS2	4843	mdanderson.org	37	chr17	26096134	26096134	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgtcatgagcaaaggcgcAgaaccgagggtacatgctgg	14	8	1	2	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_000625	exon17	c.T1903C	p.C635R	AGGCGCAGAACCG		35	3	0.09	39	0	0				0	0					G	26096134	A	G	26096134	3	3	141	1	0	0	0	0	1	0	0	0	10589	188	7	4	1602	4	NOS2	17	26096134	Missense_Mutation	SNP	A	TCGA-ZM-AA06-01A-12D-A435-10	15563109	26096134	55099076	49	10182											
MYO18A	399687	broad.mit.edu;mdanderson.org	37	chr17	27437604	27437604	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagagagcaccgtggcactGcctgcgcggcccagaaacag	13	15	0	2	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	MYO18A_ENST00000527372,NS,carcinoma,0,2	MYO18A	NM_078471	exon18	c.C2937A	p.G979G	GGCACTGCCTGCG		31	7	0.23	32	2	0.0625		217	2	4	1	0.25				T	27437604	G	T	27437604	2	4	141	1	0	0	0	0	0	0	0	1	10112	1306	46	2		2	MYO18A	17	27437604	Silent	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	1341470	27437604	53757606	50	10183											
SP2	6668	broad.mit.edu	37	chr17	45993951	45993951	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatcatcaccccctcaccgTccagtcacaagcctgtcccc	4	22	4	0	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	SP2	NM_003110	exon3	c.T514C	p.S172P	TCACCGTCCAGTC		114	8	0.07	91	5	0.0549450549		38		5	0	0				C	45993951	T	C	45993951	3	2	141	1	0	0	0	0	1	0	0	0	15017	1667	58	4	524	4	SP2	17	45993951	Missense_Mutation	SNP	T	TCGA-ZM-AA06-01A-12D-A435-10	18556347	45993951	35201259	51	10184											
MYCBPAP	84073	broad.mit.edu	37	chr17	48585969	48585969	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcggccgttggctggcgggTgcggcgcagcctcggtgtct	20	12	1	0	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	MYCBPAP	NM_032133	exon1	c.T63G	p.G21G	GGCGGGTGCGGCG		136	36	0.26	105	20	0.1904761905		135		0	0					G	48585969	T	G	48585969	2	3	141	1	0	0	0	0	0	0	0	1	10066	1683	59	4		4	MYCBPAP	17	48585969	Silent	SNP	T	TCGA-ZM-AA06-01A-12D-A435-10	2592018	48585969	32609241	52	10185											
CREB3L3	84699	ucsc.edu	37	chr19	4168454	4168454	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tatcgatggcctggagactcGgtgggtagtgctggacccag	16	9	0	1	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	CREB3L3	NM_032607	exon6	c.G821T	p.R274L	AGACTCGGTGGGT		42	4	0.1	48	0	0		53		0	0					T	4168454	G	T	4168454	3	4	141	1	0	0	0	0	1	0	0	0	3881	1130	39	1	843	1	CREB3L3	19	4168454	Missense_Mutation	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10		4168454	54960529	53	10186											
PLIN5	440503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	4529156	4529157	+	Missense_Mutation	DNP	GC	GC	AA													tttccagtacaacatccacaGcatggctcacggagcgcttc					novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	GC	GC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	PLIN5,NS,carcinoma,0,1	PLIN5	NM_001013706	exon5	c.G448T	p.A150F	TCCACAGCATGGC		132	39	0.3	127	0	0		0	1	2	0	0				AA	4529157	GC	AA	4529156	3	1	141	1	0	0	0	0	1	0	0	0	12140	971	34	2	958	2	PLIN5	19	4529156	Missense_Mutation	DNP	GC	TCGA-ZM-AA06-01A-12D-A435-10	360702	4529156	54599827	54	10187											
PTPRS	5802	mdanderson.org	37	chr19	5246019	5246019	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	cctggcatgatctcgtggctCatgggcaggatggagaagcg	16	9	2	2	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_002850	exon10	c.G756T	p.M252I	GTGGCTCATGGGC		34	3	0.09	31	0	0				9	0	0				A	5246019	C	A	5246019	3	1	141	1	0	0	0	0	1	0	0	0	12862	826	29	3	5206	3	PTPRS	19	5246019	Missense_Mutation	SNP	C	TCGA-ZM-AA06-01A-12D-A435-10	716863	5246019	53882964	55	10188											
RASAL3	64926	mdanderson.org	37	chr19	15564108	15564108	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccccgcagattggcggcggCgggcaggacgccggaccggg	20	14	0	1	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_022904	exon15	c.G2480A	p.R827H	CGGCGGCGGGCAG		10	2	0.2	16	0	0				1	0	0				T	15564108	C	T	15564108	3	4	141	1	0	0	0	0	1	0	0	0	13116	768	27	1	571	1	RASAL3	19	15564108	Missense_Mutation	SNP	C	TCGA-ZM-AA06-01A-12D-A435-10	10318089	15564108	43564875	56	10189											
ANKLE1	126549	broad.mit.edu	37	chr19	17397488	17397501	+	Frame_Shift_Del	DEL	TGTGTGTGTGTGTT	TGTGTGTGTGTGTT	-													tgtgtgtgtgtgtgtgtgtgTgtgtgtgtgtgtttgtgtgt					rs35771129	alternate_allele	TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	TGTGTGTGTGTGTT	TGTGTGTGTGTGTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	ANKLE1	.	.	.	.	TGTGTGTGTGTGT		14	7	0.5	12	0	0		27		9	0	0				-	17397501	TGTGTGTGTGTGTT	-	17397488	7	5	141	1	0	1	0	1	0	0	0	0	628	1711	59	0		0	ANKLE1	19	17397488	Frame_Shift_Del	DEL	TGTGTGTGTGTGTT	TCGA-ZM-AA06-01A-12D-A435-10	1833380	17397488	41731495	57	10190											
ZNF43	7594	mdanderson.org	37	chr19	21991246	21991246	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tagggtttctctccagtatgAgttatcttatgttcagtaag	9	6	3	1	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001256653	exon4	c.T1620C	p.T540T	AGTATGAGTTATC		27	3	0.11	26	0	0				16	0	0				G	21991246	A	G	21991246	2	3	141	1	0	0	0	0	0	0	0	1	17959	291	11	4		4	ZNF43	19	21991246	Silent	SNP	A	TCGA-ZM-AA06-01A-12D-A435-10	4593758	21991246	37137737	58	10191											
ETV2	2116	broad.mit.edu	37	chr19	36135558	36135558	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggcctctgtcctaggtggCtcggctgtggggcgagcgca	18	12	1	0	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	ETV2	NM_014209	exon7	c.C833A	p.A278D	AGGTGGCTCGGCT		73	10	0.14	57	2	0.0350877193		11		10	0	0				A	36135558	C	A	36135558	3	1	141	1	0	0	0	0	1	0	0	0	5306	797	28	2	855	2	ETV2	19	36135558	Missense_Mutation	SNP	C	TCGA-ZM-AA06-01A-12D-A435-10	14144312	36135558	22993425	59	10192											
ZNF146	7705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	36727687	36727687	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcattcagaagtcaaacctCatcagacaccagagaactca	5	12	6	3	rs369142601		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001099638	exon3	c.C345T	p.L115L	AAACCTCATCAGA		98	15	0.15	115	0	0				106	27	0.25				T	36727687	C	T	36727687	2	4	141	1	0	0	0	0	0	0	0	1	17790	813	29	3		3	ZNF146	19	36727687	Silent	SNP	C	TCGA-ZM-AA06-01A-12D-A435-10	592129	36727687	22401296	60	10193											
FAM98C	147965	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr19	38899499	38899499	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gaggcccccagtgttggggtCgcaagaagaagaagaagaag	16	7	0	5	rs200637370		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	FAM98C,NS,carcinoma,0,1	FAM98C	NM_174905	exon8	c.C1027T	p.R343C	TGGGGTCGCAAGA		139	29	0.21	127	0	0		0	1	51	12	0.24				T	38899499	C	T	38899499	3	4	141	1	0	0	0	0	1	0	0	0	5690	884	31	1	1057	1	FAM98C	19	38899499	Missense_Mutation	SNP	C	TCGA-ZM-AA06-01A-12D-A435-10	2171812	38899499	20229484	61	10194											
LRRC4B	94030	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	51020870	51020870	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctccttggagccgctcttGaagagcagaggttcgtggat	13	9	2	3	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	LRRC4B	NM_001080457	exon3	c.C2100A	p.F700L	GCTCTTGAAGAGC		49	5	0.1	47	0	0		89		40	0	0				T	51020870	G	T	51020870	3	4	141	1	0	0	0	0	1	0	0	0	9051	1281	45	3	45	3	LRRC4B	19	51020870	Missense_Mutation	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	12121371	51020870	8108113	62	10195											
NSFL1C	55968	mdanderson.org	37	chr20	1424505	1424505	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatgaggataaagctggtGgcagccatggctggccgggc	17	9	1	1	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_016143	exon9	c.C1002A	p.A334A	GCTGGTGGCAGCC		46	3	0.07	42	0	0				215	0	0				T	1424505	G	T	1424505	2	4	141	1	0	0	0	0	0	0	0	1	10719	1335	47	3		3	NSFL1C	20	1424505	Silent	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10		1424505	61601015	63	10196											
NFATC2	4773	mdanderson.org	37	chr20	50049146	50049146	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgcggaactgctggcagGgagccatggtggccacgagg	18	11	0	0	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_012340	exon9	c.C2180A	p.P727H	TGGCAGGGAGCCA		33	3	0.09	21	0	0				0	0					T	50049146	G	T	50049146	3	4	141	1	0	0	0	0	1	0	0	0	10408	1232	43	3	653	3	NFATC2	20	50049146	Missense_Mutation	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	48624641	50049146	12976374	64	10197											
DSCAM	1826	broad.mit.edu	37	chr21	41719815	41719815	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacgctgcaggacaaggaaActtggctacccacgctgctt	10	13	1	0	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	DSCAM	NM_001271534	exon6	c.T992C	p.V331A	AAGGAAACTTGGC		128	4	0.03	93	0	0		347		0	0					G	41719815	A	G	41719815	3	3	141	1	0	0	0	0	1	0	0	0	4794	43	2	4	5158	4	DSCAM	21	41719815	Missense_Mutation	SNP	A	TCGA-ZM-AA06-01A-12D-A435-10		41719815	6410080	65	10198											
ZNF280B	140883	mdanderson.org	37	chr22	22843071	22843071	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtatgaacattatttgagGgtgtactttgctgagtattc	11	4	0	3	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	ZNF280B,NS,carcinoma,0,1	ZNF280B	NM_080764	exon4	c.C653A	p.P218H	TTTGAGGGTGTAC		140	5	0.04	117	0	0		0	1	0	0					T	22843071	G	T	22843071	3	4	141	1	0	0	0	0	1	0	0	0	17872	1232	43	3	982	3	ZNF280B	22	22843071	Missense_Mutation	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10		22843071	28461495	66	10199											
MMP11	4320	broad.mit.edu	37	chr22	24121476	24121476	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacgcaggaagccccccggCctgccagcagcctcaggcct	11	20	1	0	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	MMP11	NM_005940	exon2	c.C211A	p.P71T	CCCCGGCCTGCCA		72	9	0.13	37	1	0.027027027		53		0	0					A	24121476	C	A	24121476	3	1	141	1	0	0	0	0	1	0	0	0	9697	739	26	2	217	2	MMP11	22	24121476	Missense_Mutation	SNP	C	TCGA-ZM-AA06-01A-12D-A435-10	1278405	24121476	27183090	67	10200											
MN1	4330	mdanderson.org	37	chr22	28195192	28195192	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacgttcatgtaggggggcGcgtcgaaatgctgcagccgc	15	12	1	0	rs375740551		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_002430	exon1	c.C1340A	p.A447E	GGGGGCGCGTCGA		42	3	0.07	41	0	0				0	0					T	28195192	G	T	28195192	3	4	141	1	0	0	0	0	1	0	0	0	9721	1087	38	1	2630	1	MN1	22	28195192	Missense_Mutation	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	4073716	28195192	23109374	68	10201											
SYN3	8224	broad.mit.edu	37	chr22	32923915	32923915	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggtcataccttgcggaggTgggcgtggctggggctggcc	20	9	1	0	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	SYN3	NM_133633	exon11	c.A1308C	p.P436P	CGGAGGTGGGCGT		144	23	0.16	120	19	0.1583333333		77		0	0					G	32923915	T	G	32923915	2	3	141	1	0	0	0	0	0	0	0	1	15498	1683	59	4		4	SYN3	22	32923915	Silent	SNP	T	TCGA-ZM-AA06-01A-12D-A435-10	4728723	32923915	18380651	69	10202											
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	46763694	46763694	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggttcacagccagcagccCcagcagccaggtggcgctga	14	15	1	1	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_014246	exon28	c.G8011A	p.G2671R	GCAGCCCCAGCAG		107	26	0.24	75	0	0				4	2	0.5				T	46763694	C	T	46763694	3	4	141	1	0	0	0	0	1	0	0	0	3243	623	22	3	1065	3	CELSR1	22	46763694	Missense_Mutation	SNP	C	TCGA-ZM-AA06-01A-12D-A435-10	13839779	46763694	4540872	70	10203											
DMD	1756	broad.mit.edu	37	chrX	31462743	31462743	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcaatttctcctcgaagtGcctgtgtgcaatagtcaaaa	9	10	2	0	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	DMD	NM_004006	exon60	c.C8939A	p.A2980E	CGAAGTGCCTGTG		63	7	0.11	35	2	0.0571428571		2127		4	0	0				T	31462743	G	T	31462743	5	4	141	1	0	0	0	0	0	0	1	0	4608	1333	46	2	2312	2	DMD	23	31462743	Splice_Site	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10		31462743	123807817	71	10204											
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chrX	32663131	32663131	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ttccacatcattagaaatctCtccttgtgcttgcaatgtgt	6	10	2	1	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_004006	exon10	c.G1099T	p.E367X	AAATCTCTCCTTG		122	52	0.43	74	0	0				6	2	0.33				A	32663131	C	A	32663131	4	1	141	1	0	0	0	0	0	1	0	0	4608	922	32	3	10481	3	DMD	23	32663131	Nonsense_Mutation	SNP	C	TCGA-ZM-AA06-01A-12D-A435-10	1200388	32663131	122607429	72	10205											
RBM3	5935	broad.mit.edu	37	chrX	48434994	48434994	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagagactataatggcaggTgggtagccaaagggctggga	16	7	0	1	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	RBM3	NM_006743	exon5	c.413+2T>G	.	GGCAGGTGGGTAG		42	7	0.17	24	4	0.1666666667		20		0	0					G	48434994	T	G	48434994	5	3	141	1	0	0	0	0	0	0	1	0	13180	1710	59	4	429	4	RBM3	23	48434994	Splice_Site	SNP	T	TCGA-ZM-AA06-01A-12D-A435-10	15771863	48434994	106835566	73	10206											
HUWE1	10075	broad.mit.edu;ucsc.edu;mdanderson.org	37	chrX	53585984	53585984	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	agaactttgcattcttctgtCcagcgggtcagggctgtggg	14	9	3	1	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	HUWE1	NM_031407	exon58	c.G7953A	p.W2651X	TTCTGTCCAGCGG		169	68	0.4	119	1	0.0084033613		724		3	0	0				T	53585984	C	T	53585984	4	4	141	1	0	0	0	0	0	1	0	0	7504	856	30	3	5279	3	HUWE1	23	53585984	Nonsense_Mutation	SNP	C	TCGA-ZM-AA06-01A-12D-A435-10	5150990	53585984	101684576	74	10207											
FGD1	2245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	54476099	54476099	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cggggactcttactggagagTtgggtggggtgtcttcatct	16	7	4	1	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_004463	exon14	c.A2141T	p.N714I	GGAGAGTTGGGTG		57	20	0.35	57	0	0				22	8	0.36				A	54476099	T	A	54476099	3	1	141	1	0	0	0	0	1	0	0	0	5864	1725	60	5	764	5	FGD1	23	54476099	Missense_Mutation	SNP	T	TCGA-ZM-AA06-01A-12D-A435-10	890115	54476099	100794461	75	10208											
AWAT1	158833	mdanderson.org	37	chrX	69458085	69458085	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgctctgtgagccagccaGccatcaactatctgctgagc	10	13	3	2	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	.	NM_001013579	exon5	c.G484T	p.A162S	CAGCCAGCCATCA		51	3	0.06	26	0	0				0	0					T	69458085	G	T	69458085	3	4	141	1	0	0	0	0	1	0	0	0	1232	971	34	2	502	2	AWAT1	23	69458085	Missense_Mutation	SNP	G	TCGA-ZM-AA06-01A-12D-A435-10	14981986	69458085	85812475	76	10209											
PNMA3	29944	broad.mit.edu	37	chrX	152226011	152226011	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggcaggtgcccgagggggAaaagaggcggaggctgatgg	22	6	0	2	novel		TCGA-ZM-AA06-01A-12D-A435-10	TCGA-ZM-AA06-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dc9fe22-781b-41a9-9eda-d7faaa6af579	8eeb0d34-42a4-47a8-9857-139c9c599b8d	.	PNMA3	NM_013364	exon2	c.A599G	p.E200G	AGGGGGAAAAGAG		55	17	0.31	48	13	0.2708333333		81		3	0	0				G	152226011	A	G	152226011	3	3	141	1	0	0	0	0	1	0	0	0	12202	246	9	4	601	4	PNMA3	23	152226011	Missense_Mutation	SNP	A	TCGA-ZM-AA06-01A-12D-A435-10	82767926	152226011	3044549	77	10210											
VPS13D	55187	mdanderson.org	37	chr1	12304672	12304672	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	caaggattgtggagaatattGaagtaagtcctgctgacttt	11	5	0	3	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_015378	exon5	c.G445T	p.E149X	AATATTGAAGTAA		89	5	0.06	60	0	0				0	0					T	12304672	G	T	12304672	4	4	142	1	0	0	0	0	0	1	0	0	17251	1291	45	3	459	3	VPS13D	1	12304672	Nonsense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10		12304672	236945949	1	10211											
ATP13A2	23400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	17312499	17312499	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gctacactgacagcagcactGaggggagctgggggctgcca	16	11	0	2	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_001141974	exon27	c.C3458T	p.S1153L	AGCACTGAGGGGA		42	10	0.24	54	0	0				181	34	0.19				A	17312499	G	A	17312499	3	1	142	1	0	0	0	0	1	0	0	0	1123	1294	45	3	22	3	ATP13A2	1	17312499	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	5007827	17312499	231938122	2	10212											
CELA3A	10136	ucsc.edu	37	chr1	22329543	22329543	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	actcttccagccgcgttgtcCatggtgaggatgcggtcccc	12	14	1	1	rs7519660	bycluster;by2hit2allele;by1000genomes	TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	CELA3A	NM_005747	exon2	c.C91A	p.H31N	GTTGTCCATGGTG		39	10	0.26	54	5	0.0925925926		35		0	0					A	22329543	C	A	22329543	3	1	142	1	0	0	0	0	1	0	0	0	3235	594	21	3	97	3	CELA3A	1	22329543	Missense_Mutation	SNP	C	TCGA-ZM-AA0B-01A-11D-A435-10	5017044	22329543	226921078	3	10213											
RSPO1	284654	mdanderson.org	37	chr1	38078478	38078478	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actgtcccttgctgctgctgCtgttgctgccccttgcgtct	10	15	1	0	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_001242908	exon7	c.G741A	p.Q247Q	CTGCTGCTGTTGC		39	3	0.08	39	0	0				0	0					T	38078478	C	T	38078478	2	4	142	1	0	0	0	0	0	0	0	1	13760	796	28	2		2	RSPO1	1	38078478	Silent	SNP	C	TCGA-ZM-AA0B-01A-11D-A435-10	15748935	38078478	211172143	4	10214											
C1orf56	54964	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	151020692	151020701	+	Frame_Shift_Del	DEL	GCTTCCCAGT	GCTTCCCAGT	-													aaggatagcaccagcagagaGcttcccagtgcgactcccaa					novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	GCTTCCCAGT	GCTTCCCAGT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	C1orf56	NM_017860	exon1	c.368_377del	p.123_126del	CAGAGAGCTTCCC		59	29	0.49	72	0	0		25		2	0	0				-	151020701	GCTTCCCAGT	-	151020692	7	5	142	1	0	1	0	1	0	0	0	0	2062	962	34	0	371	0	C1orf56	1	151020692	Frame_Shift_Del	DEL	GCTTCCCAGT	TCGA-ZM-AA0B-01A-11D-A435-10	112942214	151020692	98229929	5	10215											
PXDN	7837	mdanderson.org	37	chr2	1653131	1653131	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgctcgtcgggtgtgacGgtctccgtcccgatcagggt	14	12	2	1	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_012293	exon17	c.C2421A	p.T807T	TGTGACGGTCTCC		53	3	0.06	69	0	0				0	0					T	1653131	G	T	1653131	2	4	142	1	0	0	0	0	0	0	0	1	12898	1103	39	1		1	PXDN	2	1653131	Silent	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10		1653131	241546242	6	10216											
ATP6V1C2	245973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	10908882	10908882	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatggacctgaagtcccgaaCggccgcctacaacactctga	10	14	1	2	rs201753402	by1000genomes	TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_001039362	exon6	c.C416T	p.T139M	CCCGAACGGCCGC		55	9	0.16	102	0	0	0			0	0					T	10908882	C	T	10908882	3	4	142	1	0	0	0	0	1	0	0	0	1179	536	19	1	434	1	ATP6V1C2	2	10908882	Missense_Mutation	SNP	C	TCGA-ZM-AA0B-01A-11D-A435-10	9255751	10908882	232290491	7	10217											
DYNC2LI1	51626	mdanderson.org	37	chr2	44028793	44028793	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtagcaaatcaatatgtgtGgatcagaataaaccgctgtt	9	7	2	1	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_001193464	exon10	c.G750T	p.V250V	ATGTGTGGATCAG		48	3	0.06	63	0	0				28	0	0				T	44028793	G	T	44028793	2	4	142	1	0	0	0	0	0	0	0	1	4873	1335	47	3		3	DYNC2LI1	2	44028793	Silent	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	33119911	44028793	199170580	8	10218											
SMYD1	150572	mdanderson.org	37	chr2	88367450	88367450	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaaaggaaggggtctgaagGccaccaaggagttctgggct	16	8	2	1	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_198274	exon1	c.G67T	p.A23S	CTGAAGGCCACCA		74	4	0.05	137	0	0				0	0					T	88367450	G	T	88367450	3	4	142	1	0	0	0	0	1	0	0	0	14874	1203	42	2	69	2	SMYD1	2	88367450	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	44338657	88367450	154831923	9	10219											
PPA2	27068	mdanderson.org	37	chr4	106367654	106367654	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggattcattggctccttggtGgcaatctaagcaaatcacag	10	9	3	0	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_176869	exon5	c.C327A	p.A109A	CTTGGTGGCAATC		20	2	0.1	46	0	0				3	0	0				T	106367654	G	T	106367654	2	4	142	1	0	0	0	0	0	0	0	1	12331	1335	47	3		3	PPA2	4	106367654	Silent	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10		106367654	84786622	10	10220											
PDZD2	23037	mdanderson.org	37	chr5	32098697	32098697	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcccacagccaatgggaaGggtttgctgtccagaaagac	11	12	0	2	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_178140	exon22	c.G8175T	p.K2725N	TGGGAAGGGTTTG		48	3	0.06	49	0	0				3	0	0				T	32098697	G	T	32098697	3	4	142	1	0	0	0	0	1	0	0	0	11747	991	35	3	8261	3	PDZD2	5	32098697	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10		32098697	148816563	11	10221											
CCNO	10309	mdanderson.org	37	chr5	54528990	54528990	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtggctgccgtgccagcGcctcccgcgggtggaagtgg	17	13	0	0	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_021147	exon1	c.C362A	p.A121E	GCCAGCGCCTCCC		20	2	0.1	26	0	0				1	0	0				T	54528990	G	T	54528990	3	4	142	1	0	0	0	0	1	0	0	0	2955	1087	38	1	702	1	CCNO	5	54528990	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	22430293	54528990	126386270	12	10222											
ADAMTS2	9509	mdanderson.org	37	chr5	178564813	178564813	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtggtgctgggcgtcgccGtgctcgaagtacaggtccca	15	12	0	0	rs1862211	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes;alternate_allele	TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_014244	exon12	c.C1908A	p.H636Q	GTCGCCGTGCTCG		22	2	0.09	31	0	0				0	0					T	178564813	G	T	178564813	3	4	142	1	0	0	0	0	1	0	0	0	264	1136	40	1	1771	1	ADAMTS2	5	178564813	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	124035823	178564813	2350447	13	10223											
SLC25A27	9481	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	46621035	46621035	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cggctaccgtggccgagctaGgtacccggctgcccacgcct	13	17	0	0	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	SLC25A27	NM_001204051	exon1	c.G106C	p.A36P	GAGCTAGGTACCC		23	5	0.22	33	0	0		22		0	0					C	46621035	G	C	46621035	5	2	142	1	0	0	0	0	0	0	1	0	14544	1014	35	5	108	5	SLC25A27	6	46621035	Splice_Site	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10		46621035	124494032	14	10224											
ELOVL4	6785	mdanderson.org	37	chr6	80656990	80656990	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acccggctccgagtccaggaGccccatcgcggcgatgagcg	14	16	0	1	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_022726	exon1	c.C7A	p.L3I	CCAGGAGCCCCAT		27	3	0.11	42	0	0				0	0					T	80656990	G	T	80656990	3	4	142	1	0	0	0	0	1	0	0	0	5104	971	34	2	961	2	ELOVL4	6	80656990	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	34035955	80656990	90458077	15	10225											
EPB41L2	2037	mdanderson.org	37	chr6	131191163	131191163	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccccaggaccactcccaGgtgatatctctttaccattc	5	16	2	1	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_001431	exon15	c.C2147A	p.P716H	CTCCCAGGTGATA		48	3	0.06	29	0	0				35	0	0				T	131191163	G	T	131191163	3	4	142	1	0	0	0	0	1	0	0	0	5181	1000	35	3	890	3	EPB41L2	6	131191163	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	50534173	131191163	39923904	16	10226											
TNRC18	84629	mdanderson.org	37	chr7	5352833	5352833	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctactgctgccactactGctgctgctgctgctctcgga	10	15	1	0	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_001080495	exon27	c.C7689T	p.S2563S	ACTACTGCTGCTG		28	3	0.11	39	1	0.0256410256				23	0	0				A	5352833	G	A	5352833	2	1	142	1	0	0	0	0	0	0	0	1	16398	1310	46	2		2	TNRC18	7	5352833	Silent	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10		5352833	153785830	17	10227											
RBM33	155435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	155556646	155556646	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccacatctgccagcgggGccccacgcacactcgcctgt	9	21	1	0	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_053043	exon15	c.G3120T	p.G1040G	AGCGGGGCCCCAC		101	23	0.23	182	0	0				5	1	0.2				T	155556646	G	T	155556646	2	4	142	1	0	0	0	0	0	0	0	1	13181	1190	42	2		2	RBM33	7	155556646	Silent	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	150203813	155556646	3582017	18	10228											
MAPK15	225689	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr8	144804021	144804021	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggtgactggaaccggggcGgtggggtgagggtggccagc	24	7	0	2	rs376274608		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	MAPK15	NM_139021	exon13	c.G1429A	p.G477S	CGGGGCGGTGGGG		39	11	0.28	38	1	0.0263157895		32		1	0	0				A	144804021	G	A	144804021	3	1	142	1	0	0	0	0	1	0	0	0	9326	1116	39	1	1479	1	MAPK15	8	144804021	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10		144804021	1560001	19	10229											
BICD2	23299	broad.mit.edu;mdanderson.org	37	chr9	95477707	95477707	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcagcagccgccagctgcCgctgcatctcatccagctgt	9	18	2	0	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	BICD2,NS,carcinoma,0,1	BICD2	NM_001003800	exon7	c.G2297A	p.R766Q	AGCTGCCGCTGCA		82	4	0.05	118	0	0		68	1	0	0					T	95477707	C	T	95477707	3	4	142	1	0	0	0	0	1	0	0	0	1428	652	23	1	284	1	BICD2	9	95477707	Missense_Mutation	SNP	C	TCGA-ZM-AA0B-01A-11D-A435-10		95477707	45735724	20	10230											
PPP3R2	5535	mdanderson.org	37	chr9	104357065	104357065	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggttgtggcgcagctccgGcagggacatgaactcctcca	14	13	0	1	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	PPP3R2,caecum,carcinoma,+2,1	PPP3R2	NM_147180	exon1	c.C148T	p.P50S	GCTCCGGCAGGGA		37	3	0.08	63	0	0		2	1	0	0					A	104357065	G	A	104357065	3	1	142	1	0	0	0	0	1	0	0	0	12449	1203	42	2	377	2	PPP3R2	9	104357065	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	8879358	104357065	36856366	21	10231											
CRB2	286204	broad.mit.edu	37	chr9	126132724	126132724	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctgggtctggcactgagGtttcgcaccacactgcccgc	11	17	1	1	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	CRB2	NM_173689	exon7	c.G1392T	p.R464S	ACTGAGGTTTCGC		53	3	0.06	84	0	0		86		2	0	0				T	126132724	G	T	126132724	3	4	142	1	0	0	0	0	1	0	0	0	3872	1252	44	3	1418	3	CRB2	9	126132724	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	21775659	126132724	15080707	22	10232											
SCAI	286205	broad.mit.edu	37	chr9	127783012	127783012	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agacaaactactataaatctTgcataatatcgtaacttctt	3	8	2	1	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	SCAI	NM_173690	exon8	c.A618C	p.A206A	AAATCTTGCATAA		206	6	0.03	208	0	0		84		0	0					G	127783012	T	G	127783012	2	3	142	1	0	0	0	0	0	0	0	1	13921	1799	63	4		4	SCAI	9	127783012	Silent	SNP	T	TCGA-ZM-AA0B-01A-11D-A435-10	1650288	127783012	13430419	23	10233											
LARP4B	23185	mdanderson.org	37	chr10	860954	860954	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacaagaagccggcaccgaGggctctctggagaccactac	12	14	1	2	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_015155	exon16	c.C1752A	p.P584P	CACCGAGGGCTCT		43	3	0.07	57	0	0				13	0	0				T	860954	G	T	860954	2	4	142	1	0	0	0	0	0	0	0	1	8669	987	35	3		3	LARP4B	10	860954	Silent	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10		860954	134673793	24	10234											
CRY2	1408	hgsc.bcm.edu;mdanderson.org	37	chr11	45869127	45869127	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttcggtgcactggttccGcaaagggctgcgactccacg	12	14	1	0	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	CRY2,colon,carcinoma,0,1	CRY2	NM_021117	exon1	c.G149T	p.R50L	GGTTCCGCAAAGG		20	2	0.1	20	0	0		0	1	0	0					T	45869127	G	T	45869127	3	4	142	1	0	0	0	0	1	0	0	0	3927	1087	38	1	187	1	CRY2	11	45869127	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10		45869127	89137389	25	10235											
CHRM1	1128	mdanderson.org	37	chr11	62677554	62677554	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctttccacggggcttctggCccttgccagctcgatcacgc	10	17	2	0	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_000738	exon2	c.G1019A	p.G340D	TTCTGGCCCTTGC		24	2	0.08	39	0	0				0	0					T	62677554	C	T	62677554	3	4	142	1	0	0	0	0	1	0	0	0	3398	739	26	2	367	2	CHRM1	11	62677554	Missense_Mutation	SNP	C	TCGA-ZM-AA0B-01A-11D-A435-10	16808427	62677554	72328962	26	10236											
FERMT3	83706	mdanderson.org	37	chr11	63974970	63974970	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagtcgcacatcggcggggTgctcctgaagattgtggagc	17	9	0	2	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_031471	exon2	c.T134G	p.V45G	GCGGGGTGCTCCT		62	17	0.27	116	33	0.2844827586				5	1	0.2				G	63974970	T	G	63974970	3	3	142	1	0	0	0	0	1	0	0	0	5851	1696	59	4	136	4	FERMT3	11	63974970	Missense_Mutation	SNP	T	TCGA-ZM-AA0B-01A-11D-A435-10	1297416	63974970	71031546	27	10237											
ALG9	79796	mdanderson.org	37	chr11	111706994	111706994	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaactgacctctgaactctGatggaatgaactgaagctgc	10	9	2	5	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_024740	exon14	c.C1496A	p.S499X	AACTCTGATGGAA		43	3	0.07	72	0	0				32	0	0				T	111706994	G	T	111706994	4	4	142	1	0	0	0	0	0	1	0	0	520	1294	45	3	372	3	ALG9	11	111706994	Nonsense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	47732024	111706994	23299522	28	10238											
KRT84	3890	mdanderson.org	37	chr12	52774348	52774348	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgctcggcctcggccactGcagcctccaacttggcacgc	11	18	0	0	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_033045	exon7	c.C1223T	p.A408V	GCCACTGCAGCCT		42	3	0.07	33	0	0				0	0					A	52774348	G	A	52774348	3	1	142	1	0	0	0	0	1	0	0	0	8540	1319	46	2	591	2	KRT84	12	52774348	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10		52774348	81077547	29	10239											
PAN2	9924	broad.mit.edu	37	chr12	56719235	56719235	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgactccttgagtctgtaggGtatctagggattttaggaag	13	5	2	2	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	PAN2	NM_014871	exon9	c.C1363A	p.P455T	TGTAGGGTATCTA		100	4	0.04	78	0	0		107		22	0	0				T	56719235	G	T	56719235	3	4	142	1	0	0	0	0	1	0	0	0	11460	1261	44	3	2317	3	PAN2	12	56719235	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	3944887	56719235	77132660	30	10240											
FAM109A	144717	mdanderson.org	37	chr12	111800828	111800828	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggctggggcagggccatgCcacccccgccacgtacagcc	15	17	0	0	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_001177996	exon4	c.G443A	p.G148D	GCCATGCCACCCC		16	2	0.13	23	0	0				1	0	0				T	111800828	C	T	111800828	3	4	142	1	0	0	0	0	1	0	0	0	5425	739	26	2	349	2	FAM109A	12	111800828	Missense_Mutation	SNP	C	TCGA-ZM-AA0B-01A-11D-A435-10	55081593	111800828	22051067	31	10241											
PEBP1	5037	mdanderson.org	37	chr12	118574112	118574112	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcacctacgccggggcggCggtggacgagctgggcaaag	18	11	1	0	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_002567	exon1	c.C98T	p.A33V	GGGCGGCGGTGGA		15	2	0.13	18	0	0				100	0	0				T	118574112	C	T	118574112	3	4	142	1	0	0	0	0	1	0	0	0	11759	768	27	1	100	1	PEBP1	12	118574112	Missense_Mutation	SNP	C	TCGA-ZM-AA0B-01A-11D-A435-10	6773284	118574112	15277783	32	10242											
CCDC64	92558	mdanderson.org	37	chr12	120527873	120527873	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcagcagctggaagcttggCaggtaaactggagcctgaga	15	9	0	1	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_207311	exon8	c.C1558T	p.Q520X	GCTTGGCAGGTAA		42	3	0.07	69	0	0				52	0	0				T	120527873	C	T	120527873	4	4	142	1	0	0	0	0	0	1	0	0	2855	711	25	2	1588	2	CCDC64	12	120527873	Nonsense_Mutation	SNP	C	TCGA-ZM-AA0B-01A-11D-A435-10	1953761	120527873	13324022	33	10243											
JPH4	84502	mdanderson.org	37	chr14	24044904	24044904	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacgcccacctggcagcggCgatctcctggcgctgacggg	16	15	1	1	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	JPH4,NS,carcinoma,0,1	JPH4	NM_032452	exon4	c.G1141A	p.A381T	CAGCGGCGATCTC		41	3	0.07	44	0	0		0	1	0	0					T	24044904	C	T	24044904	3	4	142	1	0	0	0	0	1	0	0	0	8006	768	27	1	761	1	JPH4	14	24044904	Missense_Mutation	SNP	C	TCGA-ZM-AA0B-01A-11D-A435-10		24044904	83304636	34	10244											
KCNH5	27133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	63447863	63447863	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atggcggtgtagaaggtaagAattaaaatcacccaatccca	9	8	1	2	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_172375	exon6	c.T669C	p.I223I	GGTAAGAATTAAA		86	14	0.16	104	0	0				2	2	1				G	63447863	A	G	63447863	2	3	142	1	0	0	0	0	0	0	0	1	8078	242	9	4		4	KCNH5	14	63447863	Silent	SNP	A	TCGA-ZM-AA0B-01A-11D-A435-10	39402959	63447863	43901677	35	10245											
FUT8	2530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	66028473	66028473	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagacttgaggcgaatggcCgaatctctccggtaggtcct	13	10	1	2	rs372888976		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_178155	exon3	c.C192T	p.A64A	AATGGCCGAATCT		50	5	0.1	51	0	0				1	0	0				T	66028473	C	T	66028473	2	4	142	1	0	0	0	0	0	0	0	1	6144	639	23	1		1	FUT8	14	66028473	Silent	SNP	C	TCGA-ZM-AA0B-01A-11D-A435-10	2580610	66028473	41321067	36	10246											
EIF2B2	8892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	75475839	75475839	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtgggaatgcaccttcctAcatctaccgcctgatgagtg	11	11	1	2	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_014239	exon8	c.A1004G	p.Y335C	CTTCCTACATCTA		120	31	0.26	182	0	0				59	15	0.25				G	75475839	A	G	75475839	3	3	142	1	0	0	0	0	1	0	0	0	5027	391	14	4	1034	4	EIF2B2	14	75475839	Missense_Mutation	SNP	A	TCGA-ZM-AA0B-01A-11D-A435-10	9447366	75475839	31873701	37	10247											
ISLR2	57611	mdanderson.org	37	chr15	74427119	74427119	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gccagaggacgtgcagggggAgggccttgatgaagacgcgg	20	8	0	4	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_001130136	exon4	c.A2024G	p.E675G	AGGGGGAGGGCCT		57	6	0.11	55	0	0				0	0					G	74427119	A	G	74427119	3	3	142	1	0	0	0	0	1	0	0	0	7902	304	11	4	2026	4	ISLR2	15	74427119	Missense_Mutation	SNP	A	TCGA-ZM-AA0B-01A-11D-A435-10		74427119	28104273	38	10248											
IQGAP1	8826	mdanderson.org	37	chr15	90991921	90991921	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gactgcagcaacagaatagcGactggtacttgaagcagctc	11	10	0	2	rs138254672	bycluster;byfrequency;alternate_allele	TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_003870	exon10	c.G1030T	p.D344Y	AATAGCGACTGGT		45	3	0.07	85	0	0				3	0	0				T	90991921	G	T	90991921	3	4	142	1	0	0	0	0	1	0	0	0	7857	1058	37	1	1068	1	IQGAP1	15	90991921	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	16564802	90991921	11539471	39	10249											
NTN3	4917	mdanderson.org	37	chr16	2522076	2522076	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcgtgagcctgcgcttctGctcagctcccccagcctccg	9	19	2	1	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_006181	exon1	c.G374T	p.C125F	GCTTCTGCTCAGC		19	3	0.16	31	0	0				0	0					T	2522076	G	T	2522076	3	4	142	1	0	0	0	0	1	0	0	0	10748	1319	46	2	376	2	NTN3	16	2522076	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10		2522076	87832677	40	10250											
PPL	5493	broad.mit.edu	37	chr16	4934417	4934417	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acctcgcgctcggcctccctGcgggcctgccgctcgcgctc	12	21	0	0	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	PPL	NM_002705	exon22	c.C4239A	p.R1413R	CTCCCTGCGGGCC		47	3	0.06	56	0	0		168		0	0					T	4934417	G	T	4934417	2	4	142	1	0	0	0	0	0	0	0	1	12382	1306	46	2		2	PPL	16	4934417	Silent	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	2412341	4934417	85420336	41	10251											
ABCC12	94160	mdanderson.org	37	chr16	48180307	48180307	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcctcgctggtccagatctGagataaggtagggtccttca	13	10	2	2	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_033226	exon1	c.C29A	p.S10X	AGATCTGAGATAA		44	3	0.07	75	1	0.0133333333				0	0					T	48180307	G	T	48180307	4	4	142	1	0	0	0	0	0	1	0	0	52	1294	45	3	4166	3	ABCC12	16	48180307	Nonsense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	43245890	48180307	42174446	42	10252											
ARL2BP	23568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	57283712	57283712	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatacattgaagaacagCtgctgcagcggattcctgag	10	8	0	3	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_012106	exon4	c.C241T	p.L81L	GAACAGCTGCTGC		58	7	0.12	62	0	0				7	0	0				T	57283712	C	T	57283712	2	4	142	1	0	0	0	0	0	0	0	1	933	796	28	2		2	ARL2BP	16	57283712	Silent	SNP	C	TCGA-ZM-AA0B-01A-11D-A435-10	9103405	57283712	33071041	43	10253											
GALNS	2588	mdanderson.org	37	chr16	88884506	88884506	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgaggtgatcctgctgaggGcctcctggtactcggcgctg	15	13	0	2	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_000512	exon13	c.C1391A	p.A464D	CTGAGGGCCTCCT		18	2	0.11	27	0	0				19	0	0				T	88884506	G	T	88884506	3	4	142	1	0	0	0	0	1	0	0	0	6245	1203	42	2	185	2	GALNS	16	88884506	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	31600794	88884506	1470247	44	10254											
POLR2A	5430	ucsc.edu	37	chr17	7415174	7415174	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggccctggagcgggagctGtaccacgtcatctcctttga	12	12	2	1	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	POLR2A,NS,carcinoma,0,1	POLR2A	NM_000937	exon25	c.G4146T	p.L1382L	GGAGCTGTACCAC		44	4	0.09	57	0	0		157	1	12	0	0				T	7415174	G	T	7415174	2	4	142	1	0	0	0	0	0	0	0	1	12261	1364	48	3		3	POLR2A	17	7415174	Silent	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10		7415174	73780036	45	10255											
MYH13	8735	mdanderson.org	37	chr17	10204986	10204986	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctagctcatgctggactctcCggcatctggacagctgcgtg	12	13	3	0	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	MYH13_ENST00000252172,NS,carcinoma,0,6	MYH13_ENST00000252172	NM_003802	exon40	c.G5702A	p.R1901Q	ACTCTCCGGCATC		23	3	0.13	42	0	0		0	6	19	0	0				T	10204986	C	T	10204986	3	4	142	1	0	0	0	0	1	0	0	0	10079	652	23	1	122	1	MYH13	17	10204986	Missense_Mutation	SNP	C	TCGA-ZM-AA0B-01A-11D-A435-10	2789812	10204986	70990224	46	10256											
CNP	1267	mdanderson.org	37	chr17	40125922	40125922	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccggaaggggggcgccttgCagtcctgcaccatcatatga	14	12	1	1	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_033133	exon4	c.C1246T	p.Q416X	GCCTTGCAGTCCT		17	2	0.12	9	0	0				42	0	0				T	40125922	C	T	40125922	4	4	142	1	0	0	0	0	0	1	0	0	3649	711	25	2	1260	2	CNP	17	40125922	Nonsense_Mutation	SNP	C	TCGA-ZM-AA0B-01A-11D-A435-10	29920936	40125922	41069288	47	10257											
VPS25	84313	broad.mit.edu	37	chr17	40925483	40925484	+	Translation_Start_Site	INS	-	-	GGCTACTACGAT													ggtagcttccgggtttcctgINSggctactacgatggcgatga					novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	VPS25	.	.	.	.	TTTCCTGGGCTAC		115	12	0.1	138	0	0		11		11	0	0				GGCTACTACGAT	40925484	-	GGCTACTACGAT	40925483	6	5	142	1	0	1	1	0	0	0	0	0	17255	1363	47	0		0	VPS25	17	40925483	Translation_Start_Site	INS	-	TCGA-ZM-AA0B-01A-11D-A435-10	799561	40925483	40269727	48	10258											
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	65119087	65119087	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atttcgaatgtccacttacaGgtaaaggcaccgacataact	7	10	0	0	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_014877	exon26	c.C3629G	p.P1210R	CTTACAGGTAAAG		93	17	0.18	88	0	0				8	6	0.75				C	65119087	G	C	65119087	3	2	142	1	0	0	0	0	1	0	0	0	7089	1014	35	5	2231	5	HELZ	17	65119087	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	24193604	65119087	16076123	49	10259											
GALK1	2584	mdanderson.org	37	chr17	73759111	73759111	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caacctgcagtcaatgagcaGcgcgtggcctttctgtccca	10	14	2	1	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_000154	exon4	c.C595A	p.L199M	TGAGCAGCGCGTG		31	3	0.1	42	0	0				35	0	0				T	73759111	G	T	73759111	3	4	142	1	0	0	0	0	1	0	0	0	6242	962	34	2	603	2	GALK1	17	73759111	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	8640024	73759111	7436099	50	10260											
TMEM200C	645369	mdanderson.org	37	chr18	5892041	5892041	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctttctggcggaaatccttaGcaggccgccggtggcgatca	13	12	2	0	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_001080209	exon1	c.C22A	p.L8I	TCCTTAGCAGGCC		20	2	0.1	36	0	0				2	0	0				T	5892041	G	T	5892041	3	4	142	1	0	0	0	0	1	0	0	0	16184	962	34	2	1847	2	TMEM200C	18	5892041	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10		5892041	72185207	51	10261											
LAMA1	284217	mdanderson.org	37	chr18	7040215	7040215	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtataaccttccttacatgGgcactgacctggctgcttcc	8	13	0	1	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_005559	exon10	c.C1282A	p.P428T	TACATGGGCACTG		38	3	0.08	62	1	0.0161290323				0	0					T	7040215	G	T	7040215	3	4	142	1	0	0	0	0	1	0	0	0	8643	1232	43	3	8161	3	LAMA1	18	7040215	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	1148174	7040215	71037033	52	10262											
C19orf35	374872	mdanderson.org	37	chr19	2278645	2278645	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cacgcggtaatacagggcgtCcccgctctctgcgcagggtg	14	14	1	0	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_198532	exon3	c.G550A	p.D184N	GGGCGTCCCCGCT		21	3	0.14	30	0	0				1	0	0				T	2278645	C	T	2278645	3	4	142	1	0	0	0	0	1	0	0	0	1932	855	30	3	879	3	C19orf35	19	2278645	Missense_Mutation	SNP	C	TCGA-ZM-AA0B-01A-11D-A435-10		2278645	56850338	53	10263											
MAP2K2	5605	broad.mit.edu	37	chr19	4090612	4090612	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actgtcacacggcggtgcgcGtgggtgtgccgggctggttc	18	11	1	0	rs117945277	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	MAP2K2	NM_030662	exon11	c.C1187A	p.T396K	GTGCGCGTGGGTG		102	3	0.03	124	0	0		72		933	1	0				T	4090612	G	T	4090612	3	4	142	1	0	0	0	0	1	0	0	0	9286	1145	40	1	19	1	MAP2K2	19	4090612	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	1811967	4090612	55038371	54	10264											
ZNF653	115950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	11597957	11597957	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctcctccttctttagcaaGcacaggtcctccttctctac	4	16	3	0	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_138783	exon5	c.C1188T	p.C396C	TAGCAAGCACAGG		51	19	0.37	47	0	0				21	10	0.48				A	11597957	G	A	11597957	2	1	142	1	0	0	0	0	0	0	0	1	18122	963	34	2		2	ZNF653	19	11597957	Silent	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	7507345	11597957	47531026	55	10265											
CYP4F11	57834	mdanderson.org	37	chr19	16025653	16025653	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggactgggggatgcaaccGcaggctctccttaatgcaca	13	12	1	0	rs374763718	alternate_allele	TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	CYP4F11,right_upper_lobe,carcinoma,+1,1	CYP4F11	NM_021187	exon9	c.C1168T	p.R390W	GCAACCGCAGGCT		85	4	0.05	83	0	0		1	1	0	0					A	16025653	G	A	16025653	3	1	142	1	0	0	0	0	1	0	0	0	4209	1086	38	1	422	1	CYP4F11	19	16025653	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	4427696	16025653	43103330	56	10266											
ZNF585A	199704	hgsc.bcm.edu	37	chr19	37643935	37643935	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tttctccagtatgaattcttCggtgtgcaatcaaatgggtc	9	8	3	1	rs368991030		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	ZNF585A,colon,carcinoma,0,1	ZNF585A	NM_199126	exon6	c.G701A	p.R234Q	ATTCTTCGGTGTG		124	5	0.04	105	0	0		0	1	0	0					T	37643935	C	T	37643935	3	4	142	1	0	0	0	0	1	0	0	0	18073	884	31	1	1447	1	ZNF585A	19	37643935	Missense_Mutation	SNP	C	TCGA-ZM-AA0B-01A-11D-A435-10	21618282	37643935	21485048	57	10267											
CHGB	1114	mdanderson.org	37	chr20	5903989	5903989	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gcttgataagatggcacatgGatatggtgaagaaagtgagg	15	3	0	5	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_001819	exon4	c.G1199T	p.G400V	CACATGGATATGG		16	3	0.19	30	0	0				2	0	0				T	5903989	G	T	5903989	3	4	142	1	0	0	0	0	1	0	0	0	3361	1174	41	3	1213	3	CHGB	20	5903989	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10		5903989	57121531	58	10268											
ADAMTS5	11096	broad.mit.edu;mdanderson.org	37	chr21	28296507	28296507	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcacaggtcctagagcaGgcgagccatgggcccgtgac	15	12	1	2	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	ADAMTS5	NM_007038	exon8	c.C2658A	p.A886A	AGAGCAGGCGAGC		80	4	0.05	83	0	0		184		0	0					T	28296507	G	T	28296507	2	4	142	1	0	0	0	0	0	0	0	1	268	987	35	3		3	ADAMTS5	21	28296507	Silent	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10		28296507	19833388	59	10269											
OSBP2	23762	mdanderson.org	37	chr22	31091149	31091149	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	caagatcggaacctgtgtccGagacgacgtctgagccggag	14	11	1	3	rs375188093	alternate_allele	TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_030758	exon1	c.G253T	p.E85X	GTGTCCGAGACGA		37	3	0.08	79	0	0				0	0					T	31091149	G	T	31091149	4	4	142	1	0	0	0	0	0	1	0	0	11320	1059	37	1	255	1	OSBP2	22	31091149	Nonsense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10		31091149	20213417	60	10270											
SOX10	6663	mdanderson.org	37	chr22	38369790	38369790	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgtgaggtggatggctgGtcggtgtagtgtgggggccc	20	6	1	1	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_006941	exon4	c.C1113A	p.D371E	TGGCTGGTCGGTG		32	3	0.09	50	0	0				0	0					T	38369790	G	T	38369790	3	4	142	1	0	0	0	0	1	0	0	0	14994	1252	44	3	291	3	SOX10	22	38369790	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	7278641	38369790	12934776	61	10271											
DDX17	10521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	38895499	38895499	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tttcggcgtagctcatcaacCtcatactattgaaaaaaaat	5	9	3	1	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_006386	exon3	c.G444C	p.E148D	ATCAACCTCATAC		105	18	0.17	98	0	0				7	0	0				G	38895499	C	G	38895499	3	3	142	1	0	0	0	0	1	0	0	0	4367	680	24	5	1795	5	DDX17	22	38895499	Missense_Mutation	SNP	C	TCGA-ZM-AA0B-01A-11D-A435-10	525709	38895499	12409067	62	10272											
FBLN1	2192	mdanderson.org	37	chr22	45958794	45958794	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcccacttttcttgcagccGctgtgagcgcttgccttgcc	10	15	1	1	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_001996	exon15	c.G1700A	p.R567H	GCAGCCGCTGTGA		28	3	0.11	38	0	0				325	0	0				A	45958794	G	A	45958794	3	1	142	1	0	0	0	0	1	0	0	0	5730	1087	38	1	1766	1	FBLN1	22	45958794	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	7063295	45958794	5345772	63	10273											
ACOT9	23597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	23740077	23740077	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaacttaatgtcctgttctGggctcaagctcttcttacac	7	11	4	1	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_001037171	exon8	c.C509T	p.P170L	TGTTCTGGGCTCA		67	19	0.28	72	0	0				12	4	0.33				A	23740077	G	A	23740077	3	1	142	1	0	0	0	0	1	0	0	0	157	1348	47	3	873	3	ACOT9	23	23740077	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10		23740077	131530483	64	10274											
SLC6A14	11254	mdanderson.org	37	chrX	115568988	115568988	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcatcagagaatttccatGttggtgaaaatgatgagaat	9	5	2	4	rs61740723	alternate_allele	TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_007231	exon2	c.G79T	p.V27F	TTCCATGTTGGTG		43	3	0.07	41	0	0				0	0					T	115568988	G	T	115568988	3	4	142	1	0	0	0	0	1	0	0	0	14731	1377	48	3	85	3	SLC6A14	23	115568988	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	91828911	115568988	39701572	65	10275											
FAM3A	60343	mdanderson.org	37	chrX	153736636	153736636	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaccgttcaccagggcgatGttcagcccgcggcccacgtt	11	16	3	0	novel		TCGA-ZM-AA0B-01A-11D-A435-10	TCGA-ZM-AA0B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	084a80d6-bc9b-40e7-8964-49d8f56e651f	c4912418-4a95-409b-8512-ac4c94533b97	.	.	NM_001171134	exon5	c.C318A	p.N106K	GGCGATGTTCAGC		11	2	0.18	8	0	0				31	0	0				T	153736636	G	T	153736636	3	4	142	1	0	0	0	0	1	0	0	0	5591	1368	48	3	394	3	FAM3A	23	153736636	Missense_Mutation	SNP	G	TCGA-ZM-AA0B-01A-11D-A435-10	38167648	153736636	1533924	66	10276											
AGBL4	84871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	50163073	50163073	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctaatgaacagatcatacTcaaactcagagacctggtcc	7	12	3	3	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_032785	exon3	c.A194G	p.E65G	TCATACTCAAACT		347	33	0.1	262	0	0				1	0	0				C	50163073	T	C	50163073	3	2	143	1	0	0	0	0	1	0	0	0	374	1551	54	4	1365	4	AGBL4	1	50163073	Missense_Mutation	SNP	T	TCGA-ZM-AA0D-01A-11D-A435-10		50163073	199087548	1	10277											
VASH2	79805	mdanderson.org	37	chr1	213125107	213125107	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcacgtggccaaggtgcacCctaaggggggagaaatggtg	17	8	0	1	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_024749	exon2	c.C223A	p.P75T	GTGCACCCTAAGG		35	3	0.09	57	0	0				0	0					A	213125107	C	A	213125107	3	1	143	1	0	0	0	0	1	0	0	0	17185	623	22	3	225	3	VASH2	1	213125107	Missense_Mutation	SNP	C	TCGA-ZM-AA0D-01A-11D-A435-10	162962034	213125107	36125514	2	10278											
GNPAT	8443	mdanderson.org	37	chr1	231396280	231396280	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	aggaatcccttcaatctgtgGatgtcctccgagaggaagtg	12	9	2	1	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_014236	exon3	c.G289T	p.D97Y	TCTGTGGATGTCC		42	3	0.07	33	0	0				3	0	0				T	231396280	G	T	231396280	3	4	143	1	0	0	0	0	1	0	0	0	6582	1174	41	3	299	3	GNPAT	1	231396280	Missense_Mutation	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10	18271173	231396280	17854341	3	10279											
ALK	238	mdanderson.org	37	chr2	30143262	30143262	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtccagagctagcgagccGcgggcctcgggcctgccagc	15	16	0	1	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_004304	exon1	c.C264A	p.R88R	CGAGCCGCGGGCC		37	3	0.08	33	0	0				0	0					T	30143262	G	T	30143262	2	4	143	1	0	0	0	0	0	0	0	1	521	1074	38	1		1	ALK	2	30143262	Silent	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10		30143262	213056111	4	10280											
RANBP2	5903	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	109382856	109382856	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcagatcttgcaaaatcaaCttcaggagaaggatttcagt	9	7	4	2	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	RANBP2	NM_006267	exon20	c.C5861T	p.T1954I	AATCAACTTCAGG		1062	79	0.07	872	0	0		488		4	0	0				T	109382856	C	T	109382856	3	4	143	1	0	0	0	0	1	0	0	0	13079	565	20	3	5939	3	RANBP2	2	109382856	Missense_Mutation	SNP	C	TCGA-ZM-AA0D-01A-11D-A435-10	79239594	109382856	133816517	5	10281											
ATP2B2	491	mdanderson.org	37	chr3	10426999	10426999	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagcatttgaagctgccGcaccgtctgctgctgcaggg	13	13	1	1	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_001001331	exon8	c.C953T	p.A318V	GCTGCCGCACCGT		46	3	0.07	38	1	0.0263157895				0	0					A	10426999	G	A	10426999	3	1	143	1	0	0	0	0	1	0	0	0	1139	1087	38	1	2842	1	ATP2B2	3	10426999	Missense_Mutation	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10		10426999	187595431	6	10282											
STT3B	201595	mdanderson.org	37	chr3	31641852	31641852	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcacttcttttcctatagGtctctgcttggggtggttat	10	8	2	0	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_178862	exon5	c.G778T	p.V260F	CTATAGGTCTCTG		37	3	0.08	40	0	0				9	0	0				T	31641852	G	T	31641852	3	4	143	1	0	0	0	0	1	0	0	0	15389	1275	44	3	796	3	STT3B	3	31641852	Missense_Mutation	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10	21214853	31641852	166380578	7	10283											
PTPN23	25930	mdanderson.org	37	chr3	47446253	47446253	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggctcgggccaggaggccGctgtccctgtcacctggtga	16	13	1	1	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	PTPN23,NS,carcinoma,0,1	PTPN23	NM_015466	exon3	c.G271A	p.A91T	GAGGCCGCTGTCC		64	5	0.08	81	0	0		0	1	9	0	0				A	47446253	G	A	47446253	3	1	143	1	0	0	0	0	1	0	0	0	12839	1087	38	1	281	1	PTPN23	3	47446253	Missense_Mutation	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10	15804401	47446253	150576177	8	10284											
CCDC96	257236	broad.mit.edu;mdanderson.org	37	chr4	7044591	7044591	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagctggccttgatcttggaCggccgcgcggccaggctttc	15	13	1	1	rs372279731		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	CCDC96	NM_153376	exon1	c.G75A	p.P25P	CTTGGACGGCCGC		27	3	0.11	19	0	0		34		1	0	0				T	7044591	C	T	7044591	2	4	143	1	0	0	0	0	0	0	0	1	2894	523	19	1		1	CCDC96	4	7044591	Silent	SNP	C	TCGA-ZM-AA0D-01A-11D-A435-10		7044591	184109685	9	10285											
KIT	3815	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	55599320	55599320	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgattttggtctagccagaGacatcaagaatgattctaat	9	6	3	4	rs121913506	bycluster	TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	KIT,colon,carcinoma,0,932	KIT	NM_000222	exon17	c.G2446T	p.D816Y	GCCAGAGACATCA		82	8	0.1	54	0	0		7396	932	26	8	0.31				T	55599320	G	T	55599320	3	4	143	1	0	0	0	0	1	0	0	0	8371	942	33	3	2512	3	KIT	4	55599320	Missense_Mutation	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10	48554729	55599320	135554956	10	10286											
ADH1B	125	hgsc.bcm.edu;mdanderson.org	37	chr4	100232749	100232749	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattgagaggttctgggaaGcaggaggtacccctacgatg	14	7	1	1	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	ADH1B,NS,carcinoma,-1,1	ADH1B	NM_000668	exon7	c.C893A	p.A298D	TGGGAAGCAGGAG		113	5	0.04	114	0	0		-1	1	3	0	0				T	100232749	G	T	100232749	3	4	143	1	0	0	0	0	1	0	0	0	307	971	34	2	246	2	ADH1B	4	100232749	Missense_Mutation	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10	44633429	100232749	90921527	11	10287											
RXFP1	59350	mdanderson.org	37	chr4	159573048	159573048	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacagacaaagaaaatctatGgacagcaaaggtcagaaaac	8	7	2	3	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_001253727	exon18	c.G2196T	p.M732I	ATCTATGGACAGC		54	3	0.06	62	0	0				0	0					T	159573048	G	T	159573048	3	4	143	1	0	0	0	0	1	0	0	0	13810	1348	47	3	2185	3	RXFP1	4	159573048	Missense_Mutation	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10	59340299	159573048	31581228	12	10288											
TBP	6908	hgsc.bcm.edu	37	chr6	170871004	170871004	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcaacaaaggcagcagcaGcaacaacaacagcagcagca	10	12	0	0	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA		67	10	0.15	54	0	0				12	1	0.08				A	170871004	G	A	170871004	2	1	143	1	0	0	0	0	0	0	0	1	15703	962	34	2		2	TBP	6	170871004	Silent	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10		170871004	244063	13	10289											
GNA12	2768	mdanderson.org	37	chr7	2883564	2883564	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgcggccgtggatgatgcGcatctgcttgaggaacgtgg	16	10	1	2	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_007353	exon1	c.C232A	p.R78S	TGATGCGCATCTG		52	3	0.06	61	0	0				3	0	0				T	2883564	G	T	2883564	3	4	143	1	0	0	0	0	1	0	0	0	6541	1087	38	1	929	1	GNA12	7	2883564	Missense_Mutation	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10		2883564	156255099	14	10290											
CHN2	1124	mdanderson.org	37	chr7	29438103	29438103	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctacacgctggctctcagGtgaggcgcatttcattcctt	10	12	2	1	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_004067	exon5	c.290+1G>T	.	TCTCAGGTGAGGC		49	3	0.06	40	0	0				1	0	0				T	29438103	G	T	29438103	5	4	143	1	0	0	0	0	0	0	1	0	3385	1275	44	3	309	3	CHN2	7	29438103	Splice_Site	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10	26554539	29438103	129700560	15	10291											
WNK2	65268	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr9	96024344	96024344	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggcgggcccgggatcgcCagcccttgcccaactgtcca	12	18	0	0	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	WNK2	NM_006648	exon12	c.C3315T	p.A1105A	GATCGCCAGCCCT		103	7	0.07	111	1	0.009009009		277		0	0					T	96024344	C	T	96024344	2	4	143	1	0	0	0	0	0	0	0	1	17437	581	21	3		3	WNK2	9	96024344	Silent	SNP	C	TCGA-ZM-AA0D-01A-11D-A435-10		96024344	45189087	16	10292											
FBXW5	54461	mdanderson.org	37	chr9	139835404	139835404	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcctctggctggcaagccaGgagaagaaggtgcgaggccg	17	11	1	2	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_018998	exon9	c.C1677A	p.S559S	AAGCCAGGAGAAG		36	3	0.08	44	0	0				202	0	0				T	139835404	G	T	139835404	2	4	143	1	0	0	0	0	0	0	0	1	5800	987	35	3		3	FBXW5	9	139835404	Silent	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10	43811060	139835404	1378027	17	10293											
PDLIM1	9124	mdanderson.org	37	chr10	97006973	97006973	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcagatggagctgattaccTttttcttcagactccaggat	9	9	2	3	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_020992	exon5	c.A684G	p.K228K	ATTACCTTTTTCT		42	3	0.07	59	0	0				172	0	0				C	97006973	T	C	97006973	2	2	143	1	0	0	0	0	0	0	0	1	11725	1623	56	4		4	PDLIM1	10	97006973	Silent	SNP	T	TCGA-ZM-AA0D-01A-11D-A435-10		97006973	38527774	18	10294											
MTCH2	23788	mdanderson.org	37	chr11	47653218	47653218	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacataccatggaagggatGtgtgatgagggtagcagcag	15	5	0	2	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_014342	exon6	c.C415A	p.H139N	AGGGATGTGTGAT		48	3	0.06	63	0	0				71	0	0				T	47653218	G	T	47653218	3	4	143	1	0	0	0	0	1	0	0	0	9961	1377	48	3	528	3	MTCH2	11	47653218	Missense_Mutation	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10		47653218	87353298	19	10295											
OR5D18	219438	mdanderson.org	37	chr11	55587808	55587808	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agatgcgttcagtcagtgggCgccgcaaagccttctccacc	11	14	3	1	rs149397041	alternate_allele	TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	OR5D18,NS,adenocarcinoma,0,7	OR5D18	NM_001001952	exon1	c.C703T	p.R235C	AGTGGGCGCCGCA		115	5	0.04	118	0	0		0	7	0	0					T	55587808	C	T	55587808	3	4	143	1	0	0	0	0	1	0	0	0	11203	768	27	1	705	1	OR5D18	11	55587808	Missense_Mutation	SNP	C	TCGA-ZM-AA0D-01A-11D-A435-10	7934590	55587808	79418708	20	10296											
SORL1	6653	broad.mit.edu;mdanderson.org	37	chr11	121466453	121466453	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtgacggccaccaagattgCcaggatggccgggacgaggc	16	11	0	2	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	SORL1	NM_003105	exon32	c.C4491A	p.C1497X	AGATTGCCAGGAT		42	5	0.12	46	0	0		218		0	0					A	121466453	C	A	121466453	4	1	143	1	0	0	0	0	0	1	0	0	14987	747	26	2	4617	2	SORL1	11	121466453	Nonsense_Mutation	SNP	C	TCGA-ZM-AA0D-01A-11D-A435-10	65878645	121466453	13540063	21	10297											
USP5	8078	mdanderson.org	37	chr12	6970675	6970675	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agatggcactgccagaactgGttcgggcccaggtgcccttc	13	13	0	2	rs199632125	by1000genomes	TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_003481	exon13	c.G1567T	p.V523F	GAACTGGTTCGGG		46	3	0.07	33	0	0	0			27	0	0				T	6970675	G	T	6970675	3	4	143	1	0	0	0	0	1	0	0	0	17140	1261	44	3	1617	3	USP5	12	6970675	Missense_Mutation	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10		6970675	126881220	22	10298											
MTIF3	219402	ucsc.edu	37	chr13	28014392	28014392	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tattcttttttgtcttttttCcttcattctgggtgtcttca	5	8	6	0	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	MTIF3	NM_001166263	exon4	c.G194A	p.G65E	TTTTTTCCTTCAT		123	2	0.02	150	0	0		21		133	14	0.11	rescued with RNA-seq			T	28014392	C	T	28014392	3	4	143	1	0	0	0	0	1	0	0	0	9982	855	30	3	654	3	MTIF3	13	28014392	Missense_Mutation	SNP	C	TCGA-ZM-AA0D-01A-11D-A435-10		28014392	87155486	23	10299											
IRS2	8660	mdanderson.org	37	chr13	110434970	110434970	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcggaactgtggcggcggCggcccccctgcgggtctgcg	17	15	2	0	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_003749	exon1	c.G3431A	p.R1144H	CGGCGGCGGCCCC		33	3	0.09	53	0	0				0	0					T	110434970	C	T	110434970	3	4	143	1	0	0	0	0	1	0	0	0	7884	768	27	1	593	1	IRS2	13	110434970	Missense_Mutation	SNP	C	TCGA-ZM-AA0D-01A-11D-A435-10	82420578	110434970	4734908	24	10300											
NID2	22795	mdanderson.org	37	chr14	52535528	52535528	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtagaagtgcaggggattcGccagcttcaccacggctgag	14	11	1	2	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_007361	exon1	c.C185A	p.A62E	GGATTCGCCAGCT		46	3	0.07	48	0	0				0	0					T	52535528	G	T	52535528	3	4	143	1	0	0	0	0	1	0	0	0	10461	1087	38	1	4030	1	NID2	14	52535528	Missense_Mutation	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10		52535528	54814012	25	10301											
SYNE2	23224	mdanderson.org	37	chr14	64626069	64626069	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agagcagtgaagggagttggGagaaactccaggaggttatc	16	5	0	3	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_015180	exon87	c.G16003T	p.E5335X	AGTTGGGAGAAAC		45	3	0.07	46	0	0				9	0	0				T	64626069	G	T	64626069	4	4	143	1	0	0	0	0	0	1	0	0	15502	1175	41	3	16345	3	SYNE2	14	64626069	Nonsense_Mutation	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10	12090541	64626069	42723471	26	10302											
MYLK3	91807	mdanderson.org	37	chr16	46762966	46762966	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caagggtgcagctgtgcttgCtctcgaaggcgtcatagagc	14	10	2	1	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_182493	exon7	c.G1742A	p.S581N	TGCTTGCTCTCGA		43	3	0.07	48	0	0				0	0					T	46762966	C	T	46762966	3	4	143	1	0	0	0	0	1	0	0	0	10105	797	28	2	745	2	MYLK3	16	46762966	Missense_Mutation	SNP	C	TCGA-ZM-AA0D-01A-11D-A435-10		46762966	43591787	27	10303											
RASD1	51655	bcgsc.ca	37	chr17	17398600	17398600	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgccgccgctgccggcccGcagcagcttcttgttccgca	12	19	1	0	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	RASD1	NM_016084	exon2	c.C685T	p.R229W	CGGCCCGCAGCAG		45	4	0.09	73	0	0		8		42	0	0				A	17398600	G	A	17398600	3	1	143	1	0	0	0	0	1	0	0	0	13117	1086	38	1	164	1	RASD1	17	17398600	Missense_Mutation	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10		17398600	63796610	28	10304											
SYNRG	11276	mdanderson.org	37	chr17	35889886	35889886	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcctggtctctgtgataccTtttcttctaagagctcatgg	9	11	4	2	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_198882	exon19	c.A3500G	p.K1167R	GATACCTTTTCTT		44	3	0.07	44	0	0				9	0	0				C	35889886	T	C	35889886	3	2	143	1	0	0	0	0	1	0	0	0	15516	1623	56	4	295	4	SYNRG	17	35889886	Missense_Mutation	SNP	T	TCGA-ZM-AA0D-01A-11D-A435-10	18491286	35889886	45305324	29	10305											
TGIF1	7050	mdanderson.org	37	chr18	3457889	3457889	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcttctagtggatgttgCactcaaacgggctgcagaga	12	9	3	1	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_170695	exon3	c.C1157T	p.A386V	ATGTTGCACTCAA		16	2	0.13	16	0	0				190	0	0				T	3457889	C	T	3457889	3	4	143	1	0	0	0	0	1	0	0	0	15884	710	25	2	1249	2	TGIF1	18	3457889	Missense_Mutation	SNP	C	TCGA-ZM-AA0D-01A-11D-A435-10		3457889	74619359	30	10306											
EPB41L3	23136	mdanderson.org	37	chr18	5445201	5445201	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctctagcaagttcaagtGttcacacactttatcaaaca	4	10	4	0	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_012307	exon4	c.C424A	p.H142N	TCAAGTGTTCACA		38	3	0.08	57	1	0.0175438596				0	0					T	5445201	G	T	5445201	3	4	143	1	0	0	0	0	1	0	0	0	5182	1377	48	3	2915	3	EPB41L3	18	5445201	Missense_Mutation	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10	1987312	5445201	72632047	31	10307											
TTC39C	125488	mdanderson.org	37	chr18	21698092	21698092	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatatttctttcataggttGgtgcagcatgatagagctca	9	6	3	2	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_001135993	exon8	c.G1082T	p.W361L	TAGGTTGGTGCAG		42	3	0.07	52	0	0				6	0	0				T	21698092	G	T	21698092	3	4	143	1	0	0	0	0	1	0	0	0	16770	1357	47	3	1112	3	TTC39C	18	21698092	Missense_Mutation	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10	16252891	21698092	56379156	32	10308											
SLC25A23	79085	mdanderson.org	37	chr19	6444206	6444206	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagggccagcgggtaactgGctatctggccgcaggtgctg	16	12	1	0	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_024103	exon9	c.C1178A	p.A393D	TAACTGGCTATCT		32	3	0.09	54	0	0				15	0	0				T	6444206	G	T	6444206	3	4	143	1	0	0	0	0	1	0	0	0	14540	1203	42	2	236	2	SLC25A23	19	6444206	Missense_Mutation	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10		6444206	52684777	33	10309											
GPATCH1	55094	mdanderson.org	37	chr19	33610018	33610018	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggctgcctcccgtcttctGccccagtgagtgcagagccc	12	17	2	2	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_018025	exon17	c.G2516T	p.C839F	TCTTCTGCCCCAG		45	3	0.07	35	0	0				66	0	0				T	33610018	G	T	33610018	3	4	143	1	0	0	0	0	1	0	0	0	6629	1319	46	2	2582	2	GPATCH1	19	33610018	Missense_Mutation	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10	27165812	33610018	25518965	34	10310											
ZNF135	7694	broad.mit.edu	37	chr19	58578438	58578438	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catggggaacacgtggaaaaAgggagaagccagacctaaat	13	7	0	2	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	ZNF135_ENST00000401053,right_upper_lobe,carcinoma,0,2	ZNF135	NM_007134	exon4	c.A658G	p.R220G	GGAAAAAGGGAGA		65	3	0.05	71	0	0		159	2	17	0	0				G	58578438	A	G	58578438	3	3	143	1	0	0	0	0	1	0	0	0	17782	63	3	4	789	4	ZNF135	19	58578438	Missense_Mutation	SNP	A	TCGA-ZM-AA0D-01A-11D-A435-10	24968420	58578438	550545	35	10311											
SMOX	54498	hgsc.bcm.edu;broad.mit.edu	37	chr20	4162476	4162476	+	Frame_Shift_Del	DEL	C	C	-													aacttgacccaggagttcttCcggcacgataaaccagtcaa					novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	SMOX	NM_175839	exon4	c.461delT	p.F154fs	GTTCTTCCGGCAC		114	11	0.1	116	0	0		119		9	0	0				-	4162476	C	-	4162476	7	5	143	1	0	1	0	1	0	0	0	0	14856	854	30	0	472	0	SMOX	20	4162476	Frame_Shift_Del	DEL	C	TCGA-ZM-AA0D-01A-11D-A435-10		4162476	58863044	36	10312											
TTLL9	164395	mdanderson.org	37	chr20	30486361	30486361	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggccaggatgggtggaaGtgaaggagtaagaccctccc	15	9	0	2	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_001008409	exon4	c.G199T	p.V67L	GTGGAAGTGAAGG		106	5	0.05	147	0	0				0	0					T	30486361	G	T	30486361	3	4	143	1	0	0	0	0	1	0	0	0	16795	1029	36	3	209	3	TTLL9	20	30486361	Missense_Mutation	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10	26323885	30486361	32539159	37	10313											
SALL4	57167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	50408195	50408195	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttggcttccagctttctggCtgagcaaagccacagctgca	10	13	1	1	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_020436	exon2	c.G827A	p.S276N	TTCTGGCTGAGCA		47	5	0.11	45	0	0				12	2	0.17				T	50408195	C	T	50408195	3	4	143	1	0	0	0	0	1	0	0	0	13864	797	28	2	2346	2	SALL4	20	50408195	Missense_Mutation	SNP	C	TCGA-ZM-AA0D-01A-11D-A435-10	19921834	50408195	12617325	38	10314											
CDC42EP1	11135	mdanderson.org	37	chr22	37964167	37964167	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgccccgctcggaaaagccGcatgaccgagaccgggatgg	14	14	0	2	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_152243	exon3	c.G516A	p.P172P	AAAGCCGCATGAC		46	3	0.07	70	0	0				45	0	0				A	37964167	G	A	37964167	2	1	143	1	0	0	0	0	0	0	0	1	3097	1074	38	1		1	CDC42EP1	22	37964167	Silent	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10		37964167	13340399	39	10315											
ARHGAP6	395	hgsc.bcm.edu	37	chrX	11197553	11197553	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagagagacatcaatcccaCggtcaaattcctcacgtaac	6	14	3	2	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_006125	exon7	c.G1349T	p.R450L	ATCCCACGGTCAA		68	4	0.06	52	0	0				0	0					A	11197553	C	A	11197553	3	1	143	1	0	0	0	0	1	0	0	0	884	536	19	1	1725	1	ARHGAP6	23	11197553	Missense_Mutation	SNP	C	TCGA-ZM-AA0D-01A-11D-A435-10		11197553	144073007	40	10316											
NUDT10	170685	mdanderson.org	37	chrX	51075901	51075901	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgtgcttccggagcgaGcgcgaggacgaggtcctgtt	16	11	0	0	rs2801627	bycluster	TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	.	NM_153183	exon2	c.G84A	p.E28E	GAGCGAGCGCGAG		202	9	0.04	198	1	0.0050505051				0	0					A	51075901	G	A	51075901	2	1	143	1	0	0	0	0	0	0	0	1	10773	962	34	2		2	NUDT10	23	51075901	Silent	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10	39878348	51075901	104194659	41	10317											
SMARCA1	6594	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	128625996	128625996	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcacttgccaggttaattccGagacctccagccctggtact	9	14	0	1	novel		TCGA-ZM-AA0D-01A-11D-A435-10	TCGA-ZM-AA0D-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cbb77b02-9739-4272-bf41-30251840590b	7ac40e81-4d59-492f-a5cf-f3b25df9905c	.	SMARCA1	NM_003069	exon14	c.C1737T	p.L579L	AATTCCGAGACCT		209	27	0.13	189	0	0		126		3	0	0				A	128625996	G	A	128625996	2	1	143	1	0	0	0	0	0	0	0	1	14821	1045	37	1		1	SMARCA1	23	128625996	Silent	SNP	G	TCGA-ZM-AA0D-01A-11D-A435-10	77550095	128625996	26644564	42	10318											
PTPRF	5792	mdanderson.org	37	chr1	44064408	44064408	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtgcccagcgggcctccgCggaaggtggaggtggagcca	18	12	0	0	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_002840	exon13	c.C2137T	p.R713W	CCTCCGCGGAAGG		70	4	0.06	117	0	0				3	0	0				T	44064408	C	T	44064408	3	4	144	1	0	0	0	0	1	0	0	0	12852	759	27	1	2179	1	PTPRF	1	44064408	Missense_Mutation	SNP	C	TCGA-ZM-AA0E-01A-12D-A435-10		44064408	205186213	1	10319											
BCL9	607	hgsc.bcm.edu;broad.mit.edu	37	chr1	147084715	147084715	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcaggaggtgatggtccgTccccctacagtgatgtcccc	12	13	0	2	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	BCL9_ENST00000234739,right_upper_lobe,carcinoma,0,1	BCL9_ENST00000234739	NM_004326	exon5	c.T87C	p.R29R	GGTCCGTCCCCCT		61	3	0.05	74	0	0		0	1	1	0	0				C	147084715	T	C	147084715	2	2	144	1	0	0	0	0	0	0	0	1	1379	1654	58	4		4	BCL9	1	147084715	Silent	SNP	T	TCGA-ZM-AA0E-01A-12D-A435-10	103020307	147084715	102165906	2	10320											
DHX9	1660	mdanderson.org	37	chr1	182852411	182852411	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agattctcaccactgaagggCgtaatgcacttatccacaaa	7	11	1	2	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_001357	exon25	c.C3052T	p.R1018C	GAAGGGCGTAATG		119	5	0.04	123	0	0				48	0	0				T	182852411	C	T	182852411	3	4	144	1	0	0	0	0	1	0	0	0	4544	768	27	1	3146	1	DHX9	1	182852411	Missense_Mutation	SNP	C	TCGA-ZM-AA0E-01A-12D-A435-10	35767696	182852411	66398210	3	10321											
TRIM67	440730	mdanderson.org	37	chr1	231299690	231299690	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaaccccggtgtgttatctGtgcctggaggagggccggca	16	11	1	0	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_001004342	exon1	c.G975T	p.L325L	TTATCTGTGCCTG		48	3	0.06	79	0	0				0	0					T	231299690	G	T	231299690	2	4	144	1	0	0	0	0	0	0	0	1	16600	1364	48	3		3	TRIM67	1	231299690	Silent	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	48447279	231299690	17950931	4	10322											
CEP68	23177	mdanderson.org	37	chr2	65299480	65299480	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggagcgcagagagccagCcctgaggggtgcgaaggacc	18	10	0	2	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_015147	exon3	c.C1250A	p.A417D	AGCCAGCCCTGAG		43	3	0.07	74	0	0				5	0	0				A	65299480	C	A	65299480	3	1	144	1	0	0	0	0	1	0	0	0	3280	739	26	2	1256	2	CEP68	2	65299480	Missense_Mutation	SNP	C	TCGA-ZM-AA0E-01A-12D-A435-10		65299480	177899893	5	10323											
NCKAP5	344148	mdanderson.org	37	chr2	133543187	133543187	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttagcccttccaaaatgtgGctttccttgatacgagttgg	9	10	0	1	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	NCKAP5,caecum,carcinoma,0,1	NCKAP5	NM_207363	exon14	c.C1197A	p.S399R	AATGTGGCTTTCC		85	4	0.05	124	1	0.0080645161		0	1	0	0					T	133543187	G	T	133543187	3	4	144	1	0	0	0	0	1	0	0	0	10269	1194	42	2	4560	2	NCKAP5	2	133543187	Missense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	68243707	133543187	109656186	6	10324											
AOX1	316	broad.mit.edu;mdanderson.org	37	chr2	201467017	201467017	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctccttcaggtaacctgtgCcgttgcactggatacaggcc	10	13	2	0	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	AOX1	NM_001159	exon6	c.C447T	p.C149C	CCTGTGCCGTTGC		109	5	0.05	138	0	0		152		0	0					T	201467017	C	T	201467017	2	4	144	1	0	0	0	0	0	0	0	1	725	747	26	2		2	AOX1	2	201467017	Silent	SNP	C	TCGA-ZM-AA0E-01A-12D-A435-10	67923830	201467017	41732356	7	10325											
PTPRG	5793	mdanderson.org	37	chr3	62263331	62263331	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ataacgcacagatcattgtcAtgctgccagacaaccagagc	8	12	2	3	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_002841	exon26	c.A3742T	p.M1248L	ATTGTCATGCTGC		30	3	0.1	27	0	0				1	0	0				T	62263331	A	T	62263331	3	4	144	1	0	0	0	0	1	0	0	0	12853	217	8	5	3844	5	PTPRG	3	62263331	Missense_Mutation	SNP	A	TCGA-ZM-AA0E-01A-12D-A435-10		62263331	135759099	8	10326											
GPR125	166647	mdanderson.org	37	chr4	22404358	22404358	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ataagaggagaatgatagcgGtagtataaaccacaggatgc	12	5	0	3	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_145290	exon15	c.C2297A	p.T766N	ATAGCGGTAGTAT		60	4	0.07	77	0	0				4	0	0				T	22404358	G	T	22404358	3	4	144	1	0	0	0	0	1	0	0	0	6678	1261	44	3	1688	3	GPR125	4	22404358	Missense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10		22404358	168749918	9	10327											
N4BP2	55728	mdanderson.org	37	chr4	40122253	40122253	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tacagattgtgtccagcaacGaggatctccacatgaaagtg	10	9	1	2	rs149362796	bycluster;byfrequency;alternate_allele	TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_018177	exon9	c.G2522T	p.R841L	AGCAACGAGGATC		89	4	0.04	95	0	0				0	0					T	40122253	G	T	40122253	3	4	144	1	0	0	0	0	1	0	0	0	10157	1058	37	1	2548	1	N4BP2	4	40122253	Missense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	17717895	40122253	151032023	10	10328											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	55593661	55593661	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacatagacccaacacaacTtccttatgatcacaaatggg	5	11	1	2	rs121913513		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	KIT,NS,malignant_melanoma,0,86	KIT	NM_000222	exon11	c.T1727C	p.L576P	CACAACTTCCTTA		92	5	0.05	104	0	0		0	86	3	2	0.67				C	55593661	T	C	55593661	3	2	144	1	0	0	0	0	1	0	0	0	8371	1609	56	4	1769	4	KIT	4	55593661	Missense_Mutation	SNP	T	TCGA-ZM-AA0E-01A-12D-A435-10	15471408	55593661	135560615	11	10329											
TLR2	7097	mdanderson.org	37	chr4	154625737	154625737	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtcttgattgattggccaGcaaattacctgtgtgactct	9	8	2	3	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_003264	exon3	c.G1678A	p.A560T	TGGCCAGCAAATT		47	4	0.09	87	0	0				13	0	0				A	154625737	G	A	154625737	3	1	144	1	0	0	0	0	1	0	0	0	16010	971	34	2	1680	2	TLR2	4	154625737	Missense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	99032076	154625737	36528539	12	10330											
TMEM174	134288	broad.mit.edu	37	chr5	72469939	72469939	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cacagctggaagaggaggccTgtgcctgcttctctcctccc	11	15	1	1	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	TMEM174	NM_153217	exon2	c.T679C	p.C227R	GAGGCCTGTGCCT		124	3	0.02	136	0	0		22		0	0					C	72469939	T	C	72469939	3	2	144	1	0	0	0	0	1	0	0	0	16149	1580	55	4	685	4	TMEM174	5	72469939	Missense_Mutation	SNP	T	TCGA-ZM-AA0E-01A-12D-A435-10		72469939	108445321	13	10331											
DIAPH1	1729	mdanderson.org	37	chr5	140953625	140953625	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atccccaggagcaggtggtgGtggaataatagtgccagagt	15	7	0	1	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_005219	exon16	c.C1792A	p.P598T	GTGGTGGTGGAAT		39	3	0.08	52	0	0				12	0	0				T	140953625	G	T	140953625	3	4	144	1	0	0	0	0	1	0	0	0	4546	1261	44	3	2078	3	DIAPH1	5	140953625	Missense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	68483686	140953625	39961635	14	10332											
DBN1	1627	mdanderson.org	37	chr5	176885163	176885163	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagggcagagttggggtctGgggggcagccagggactccc	20	9	1	2	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_080881	exon13	c.C1678A	p.Q560K	GGGTCTGGGGGGC		78	4	0.05	109	0	0				225	0	0				T	176885163	G	T	176885163	3	4	144	1	0	0	0	0	1	0	0	0	4276	1357	47	3	289	3	DBN1	5	176885163	Missense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	35931538	176885163	4030097	15	10333											
TRRAP	8295	mdanderson.org	37	chr7	98507792	98507792	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagctctgcctggggtgccCactgcccctgcagctcctgg	13	17	1	0	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_003496	exon15	c.C1464A	p.P488P	GGTGCCCACTGCC		41	3	0.07	49	0	0				1	0	0				A	98507792	C	A	98507792	2	1	144	1	0	0	0	0	0	0	0	1	16661	581	21	3		3	TRRAP	7	98507792	Silent	SNP	C	TCGA-ZM-AA0E-01A-12D-A435-10		98507792	60630871	16	10334											
MUC17	140453	hgsc.bcm.edu	37	chr7	100682117	100682117	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggtggtcagttctgaggctGgcaccctttccacaactcct	10	14	2	1	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	MUC17,right_upper_lobe,carcinoma,-2,1	MUC17	NM_001040105	exon3	c.G7420A	p.G2474S	GAGGCTGGCACCC		99	5	0.05	125	1	0.008		-2	1	0	0					A	100682117	G	A	100682117	3	1	144	1	0	0	0	0	1	0	0	0	10021	1348	47	3	7430	3	MUC17	7	100682117	Missense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	2174325	100682117	58456546	17	10335											
EN2	2020	mdanderson.org	37	chr7	155251298	155251298	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcatcgacaacatcctgCggcccgagttcggccggcga	11	15	2	0	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_001427	exon1	c.C226T	p.R76W	ATCCTGCGGCCCG		30	3	0.1	39	0	0				0	0					T	155251298	C	T	155251298	3	4	144	1	0	0	0	0	1	0	0	0	5138	759	27	1	228	1	EN2	7	155251298	Missense_Mutation	SNP	C	TCGA-ZM-AA0E-01A-12D-A435-10	54569181	155251298	3887365	18	10336											
NPM2	10361	mdanderson.org	37	chr8	21891643	21891643	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	catcagacctaacctgggagGaggaggaggaagaagaaggg	17	6	1	3	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_182795	exon6	c.G388T	p.E130X	TGGGAGGAGGAGG		41	3	0.07	54	0	0				1	0	0				T	21891643	G	T	21891643	4	4	144	1	0	0	0	0	0	1	0	0	10635	1175	41	3	406	3	NPM2	8	21891643	Nonsense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10		21891643	124472379	19	10337											
PCMTD1	115294	bcgsc.ca	37	chr8	52733143	52733143	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtgttaattctctgtttaActctctttcttttccttttg	4	8	3	0	rs111785933	bycluster	TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	PCMTD1	NM_052937	exon6	c.T842C	p.V281A	TGTTTAACTCTCT		158	8	0.05	156	3	0.0192307692		73		54	0	0				G	52733143	A	G	52733143	3	3	144	1	0	0	0	0	1	0	0	0	11632	43	2	4	235	4	PCMTD1	8	52733143	Missense_Mutation	SNP	A	TCGA-ZM-AA0E-01A-12D-A435-10	30841500	52733143	93630879	20	10338											
LY6E	4061	ucsc.edu	37	chr8	144103183	144103183	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctgctgagcctgctgccgGccctgctgcggtttggcccc	14	16	0	1	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	LY6E	NM_002346	exon4	c.G373A	p.A125T	CTGCCGGCCCTGC		36	2	0.06	46	0	0		10		137	24	0.18				A	144103183	G	A	144103183	3	1	144	1	0	0	0	0	1	0	0	0	9136	1203	42	2	383	2	LY6E	8	144103183	Missense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	91370040	144103183	2260839	21	10339											
GSDMD	79792	mdanderson.org	37	chr8	144643588	144643588	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggaccttccagccacccgCgacaggtgagagccgagagc	14	14	0	2	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_001166237	exon9	c.C731T	p.A244V	CACCCGCGACAGG		41	3	0.07	46	0	0				117	0	0				T	144643588	C	T	144643588	3	4	144	1	0	0	0	0	1	0	0	0	6859	768	27	1	749	1	GSDMD	8	144643588	Missense_Mutation	SNP	C	TCGA-ZM-AA0E-01A-12D-A435-10	540405	144643588	1720434	22	10340											
CNTLN	54875	mdanderson.org	37	chr9	17135090	17135090	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgcgttcgcctccctcaccGcacccttcgcccccagcgcg	9	23	1	0	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_017738	exon1	c.G27A	p.P9P	CTCACCGCACCCT		12	2	0.17	21	0	0				0	0					A	17135090	G	A	17135090	2	1	144	1	0	0	0	0	0	0	0	1	3662	1074	38	1		1	CNTLN	9	17135090	Silent	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10		17135090	124078341	23	10341											
LCN10	414332	mdanderson.org	37	chr9	139635320	139635320	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttcttgtagttttgggttGcacgccccaggcggaggtag	16	8	1	0	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_001001712	exon4	c.C443T	p.A148V	TGGGTTGCACGCC		34	3	0.09	41	0	0				2	0	0				A	139635320	G	A	139635320	3	1	144	1	0	0	0	0	1	0	0	0	8719	1319	46	2	171	2	LCN10	9	139635320	Missense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	122500230	139635320	1578111	24	10342											
CAMK2G	818	mdanderson.org	37	chr10	75585052	75585052	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaccatggccgtctgcaaGggcgcgggctcttgggctgg	18	11	2	0	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_001204492	exon15	c.C1107A	p.P369P	CTGCAAGGGCGCG		42	3	0.07	83	0	0				1	0	0				T	75585052	G	T	75585052	2	4	144	1	0	0	0	0	0	0	0	1	2620	987	35	3		3	CAMK2G	10	75585052	Silent	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10		75585052	59949695	25	10343											
HPS1	3257	bcgsc.ca	37	chr10	100184075	100184075	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcccaccactcactcccaGgaggatccgggctcactttt	9	16	2	0	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	HPS1,colon,carcinoma,-1,1	HPS1	NM_000195	exon14	c.C1392A	p.S464S	CTCCCAGGAGGAT		49	4	0.08	70	0	0		65	1	28	0	0				T	100184075	G	T	100184075	2	4	144	1	0	0	0	0	0	0	0	1	7379	987	35	3		3	HPS1	10	100184075	Silent	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	24599023	100184075	35350672	26	10344											
FGFR2	2263	mdanderson.org	37	chr10	123256223	123256223	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttagaggcatactcaactatGacatagagaggccctgttga	10	8	1	4	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_022970	exon13	c.C1689A	p.V563V	AACTATGACATAG		75	4	0.05	84	0	0				1	0	0				T	123256223	G	T	123256223	2	4	144	1	0	0	0	0	0	0	0	1	5898	1277	45	3		3	FGFR2	10	123256223	Silent	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	23072148	123256223	12278524	27	10345											
CDKN1C	1028	mdanderson.org	37	chr11	2905277	2905277	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgctccaccgagcccacgCcaggggcggcgcttggagag	15	15	1	1	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	CDKN1C,NS,carcinoma,0,1	CDKN1C	NM_000076	exon2	c.G908T	p.G303V	CCCACGCCAGGGG		30	3	0.1	71	0	0		0	1	1	0	0				A	2905277	C	A	2905277	3	1	144	1	0	0	0	0	1	0	0	0	3182	739	26	2	46	2	CDKN1C	11	2905277	Missense_Mutation	SNP	C	TCGA-ZM-AA0E-01A-12D-A435-10		2905277	132101239	28	10346											
FOLH1	2346	mdanderson.org	37	chr11	49204790	49204790	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaattccacgcctataagcAtattctgaaaaaaaaaattg	5	8	1	1	rs76509850	bycluster;byfrequency	TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_004476	exon7	c.T831C	p.Y277Y	ATAAGCATATTCT		153	7	0.05	159	0	0	0.006			0	0					G	49204790	A	G	49204790	2	3	144	1	0	0	0	0	0	0	0	1	6011	224	8	4		4	FOLH1	11	49204790	Silent	SNP	A	TCGA-ZM-AA0E-01A-12D-A435-10	46299513	49204790	85801726	29	10347											
TMX2	51075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	57505458	57505458	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acaattcttttcttccgcttGgatattcgcatgggcctact	7	11	2	0	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_015959	exon3	c.G324A	p.L108L	CCGCTTGGATATT		121	18	0.15	209	0	0				1	0	0				A	57505458	G	A	57505458	2	1	144	1	0	0	0	0	0	0	0	1	16326	1339	47	3		3	TMX2	11	57505458	Silent	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	8300668	57505458	77501058	30	10348											
C11orf30	56946	broad.mit.edu	37	chr11	76257194	76257194	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaacagaaatgtagagaGtcctgttcgagtccatccac	9	11	0	2	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	C11orf30	NM_020193	exon20	c.G3627T	p.E1209D	TAGAGAGTCCTGT		122	4	0.03	151	0	0		123		0	0					T	76257194	G	T	76257194	3	4	144	1	0	0	0	0	1	0	0	0	1641	1020	36	3	3701	3	C11orf30	11	76257194	Missense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	18751736	76257194	58749322	31	10349											
PRDM10	56980	mdanderson.org	37	chr11	129788444	129788444	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcactgaccagcatgccgCgccgccggaagcccatcatg	13	16	1	1	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_020228	exon15	c.G2216A	p.R739H	ATGCCGCGCCGCC		43	3	0.07	66	0	0				0	0					T	129788444	C	T	129788444	3	4	144	1	0	0	0	0	1	0	0	0	12502	768	27	1	1298	1	PRDM10	11	129788444	Missense_Mutation	SNP	C	TCGA-ZM-AA0E-01A-12D-A435-10	53531250	129788444	5218072	32	10350											
TRAFD1	10906	mdanderson.org	37	chr12	112589913	112589913	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaacattgtgccctctttcTcccctgggccttcagggaga	9	13	3	1	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_001143906	exon10	c.T1588C	p.S530P	TCTTTCTCCCCTG		38	3	0.08	71	0	0				13	0	0				C	112589913	T	C	112589913	3	2	144	1	0	0	0	0	1	0	0	0	16507	1551	54	4	1622	4	TRAFD1	12	112589913	Missense_Mutation	SNP	T	TCGA-ZM-AA0E-01A-12D-A435-10		112589913	21261982	33	10351											
NOC4L	79050	mdanderson.org	37	chr12	132632486	132632486	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccgtgagcctgccccgccGggagcccaccgtctccagct	12	19	1	1	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_024078	exon6	c.G665T	p.R222L	CCCGCCGGGAGCC		41	3	0.07	62	0	0				22	0	0				T	132632486	G	T	132632486	3	4	144	1	0	0	0	0	1	0	0	0	10561	1116	39	1	687	1	NOC4L	12	132632486	Missense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	20042573	132632486	1219409	34	10352											
RPS6KL1	83694	mdanderson.org	37	chr14	75378050	75378050	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgggatgatggtcagccGctccctgctcaccatgtggc	14	12	2	1	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_031464	exon6	c.C565T	p.R189W	TCAGCCGCTCCCT		40	3	0.08	79	0	0				0	0					A	75378050	G	A	75378050	3	1	144	1	0	0	0	0	1	0	0	0	13710	1086	38	1	1181	1	RPS6KL1	14	75378050	Missense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10		75378050	31971490	35	10353											
DIO2	1734	broad.mit.edu	37	chr14	80669620	80669620	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggaattgggggcatcctcAcccaatttcacctgacggta	10	12	2	1	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	DIO2	.	.	.	.	ATCCTCACCCAAT		204	38	0.19	162	31	0.1913580247		73		0	0					C	80669620	A	C	80669620	2	2	144	1	0	0	0	0	0	0	0	1	4553	146	6	4		4	DIO2	14	80669620	Silent	SNP	A	TCGA-ZM-AA0E-01A-12D-A435-10	5291570	80669620	26679920	36	10354											
CHGA	1113	broad.mit.edu;mdanderson.org	37	chr14	93399135	93399135	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaggcgggcctgcccctccAggtccgaggctaccccgagg	15	16	0	1	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	CHGA	NM_001275	exon7	c.A1229G	p.Q410R	CCCTCCAGGTCCG		77	5	0.06	85	0	0		32		2	0	0				G	93399135	A	G	93399135	3	3	144	1	0	0	0	0	1	0	0	0	3360	188	7	4	1255	4	CHGA	14	93399135	Missense_Mutation	SNP	A	TCGA-ZM-AA0E-01A-12D-A435-10	12729515	93399135	13950405	37	10355											
AHNAK2	113146	broad.mit.edu	37	chr14	105406606	105406606	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcactgctggccttttctGtgtcttgaaagctaccccct	8	14	3	1	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	AHNAK2	NM_138420	exon7	c.C15182A	p.T5061K	TTTTCTGTGTCTT		212	6	0.03	230	0	0		719		1	0	0				T	105406606	G	T	105406606	3	4	144	1	0	0	0	0	1	0	0	0	412	1377	48	3	2209	3	AHNAK2	14	105406606	Missense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	12007471	105406606	1942934	38	10356											
DISP2	85455	mdanderson.org	37	chr15	40661845	40661845	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcggagccccagctttgacAccagcacagccaccagcaag	10	16	0	1	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_033510	exon8	c.A3532T	p.T1178S	TTTGACACCAGCA		30	3	0.1	40	0	0				0	0					T	40661845	A	T	40661845	3	4	144	1	0	0	0	0	1	0	0	0	4568	159	6	5	3562	5	DISP2	15	40661845	Missense_Mutation	SNP	A	TCGA-ZM-AA0E-01A-12D-A435-10		40661845	61869547	39	10357											
PLEKHO2	80301	mdanderson.org	37	chr15	65157774	65157774	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccacctcagttccatccccGctgctcctcccttggggact	8	19	1	0	rs151003394	bycluster;byfrequency;by1000genomes	TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_025201	exon6	c.G1160A	p.R387H	ATCCCCGCTGCTC		40	3	0.08	66	0	0	0.002			29	0	0				A	65157774	G	A	65157774	3	1	144	1	0	0	0	0	1	0	0	0	12132	1087	38	1	1182	1	PLEKHO2	15	65157774	Missense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	24495929	65157774	37373618	40	10358											
LMAN1L	79748	mdanderson.org	37	chr15	75108636	75108636	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgacgggactggggcgccGgggagcccagggcatggtga	22	9	0	2	rs3803568	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_021819	exon2	c.G314T	p.R105L	GGCGCCGGGGAGC		34	3	0.09	43	0	0				0	0					T	75108636	G	T	75108636	3	4	144	1	0	0	0	0	1	0	0	0	8877	1116	39	1	320	1	LMAN1L	15	75108636	Missense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	9950862	75108636	27422756	41	10359											
IQGAP1	8826	hgsc.bcm.edu;broad.mit.edu	37	chr15	91037943	91037944	+	Splice_Site	DEL	AG	AG	-													tgacatgatgtgatttttacAgagtctccaaaaagcctagg					novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	AG	AG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	IQGAP1	.	.	.	.	TTTTACAGAGTCT		162	12	0.07	189	0	0		140		0	0					-	91037944	AG	-	91037943	8	5	144	1	0	1	0	1	0	0	1	0	7857	202	7	0	4769	0	IQGAP1	15	91037943	Splice_Site	DEL	AG	TCGA-ZM-AA0E-01A-12D-A435-10	15929307	91037943	11493449	42	10360											
ZNF646	9726	mdanderson.org	37	chr16	31087875	31087875	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgagactggccttttcccctGtaccacctgtggcaaggact	10	14	0	1	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_014699	exon2	c.G230T	p.C77F	TCCCCTGTACCAC		50	3	0.06	82	0	0				2	0	0				T	31087875	G	T	31087875	3	4	144	1	0	0	0	0	1	0	0	0	18118	1377	48	3	232	3	ZNF646	16	31087875	Missense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10		31087875	59266878	43	10361											
TNFSF12	8742	mdanderson.org	37	chr17	7460571	7460571	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtctggtctgttggccctGcggccagggtcctccctgcg	15	14	2	0	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_003809	exon7	c.G654T	p.L218L	GGCCCTGCGGCCA		45	3	0.07	65	0	0				56	0	0				T	7460571	G	T	7460571	2	4	144	1	0	0	0	0	0	0	0	1	16362	1306	46	2		2	TNFSF12	17	7460571	Silent	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10		7460571	73734639	44	10362											
TEKT3	64518	broad.mit.edu	37	chr17	15217536	15217536	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccagctcatgctgggacGctctgttggctctgcaatac	10	12	3	0	rs143711449	alternate_allele	TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	TEKT3,NS,adenocarcinoma,+1,1	TEKT3	NM_031898	exon6	c.C746A	p.A249E	TGGGACGCTCTGT		98	5	0.05	115	0	0		64	1	0	0					T	15217536	G	T	15217536	3	4	144	1	0	0	0	0	1	0	0	0	15812	1087	38	1	742	1	TEKT3	17	15217536	Missense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	7756965	15217536	65977674	45	10363											
FMNL1	752	mdanderson.org	37	chr17	43321261	43321261	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgctttgagcgggagcagCggccaatggaggagctgtca	16	11	1	1	rs371426654		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_005892	exon18	c.C2317T	p.R773W	GAGCAGCGGCCAA		46	3	0.07	56	0	0				42	0	0				T	43321261	C	T	43321261	3	4	144	1	0	0	0	0	1	0	0	0	5983	759	27	1	2387	1	FMNL1	17	43321261	Missense_Mutation	SNP	C	TCGA-ZM-AA0E-01A-12D-A435-10	28103725	43321261	37873949	46	10364											
UBE2Z	65264	mdanderson.org	37	chr17	46985927	46985927	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggggcggcgggccccggggCgagcagcgttgctggtgttg	22	11	0	0	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_023079	exon1	c.C62T	p.A21V	CCGGGGCGAGCAG		16	2	0.13	16	0	0				2	0	0				T	46985927	C	T	46985927	3	4	144	1	0	0	0	0	1	0	0	0	16938	768	27	1	64	1	UBE2Z	17	46985927	Missense_Mutation	SNP	C	TCGA-ZM-AA0E-01A-12D-A435-10	3664666	46985927	34209283	47	10365											
SMCHD1	23347	mdanderson.org	37	chr18	2705754	2705754	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaagattttttctttatggCgatcatgatggagaagtata	10	3	2	3	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	SMCHD1,NS,carcinoma,0,3	SMCHD1	NM_015295	exon14	c.C1905T	p.G635G	TTATGGCGATCAT		49	3	0.06	49	1	0.0204081633		0	3	2	0	0				T	2705754	C	T	2705754	2	4	144	1	0	0	0	0	0	0	0	1	14841	755	27	1		1	SMCHD1	18	2705754	Silent	SNP	C	TCGA-ZM-AA0E-01A-12D-A435-10		2705754	75371494	48	10366											
INO80C	125476	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr18	33060445	33060445	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggatccttaaatggcaaaGgtttggcagctttttccaca	10	8	0	0	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	INO80C	NM_001098817	exon4	c.C347A	p.P116H	GGCAAAGGTTTGG		107	6	0.06	126	0	0		18		23	0	0				T	33060445	G	T	33060445	3	4	144	1	0	0	0	0	1	0	0	0	7791	1000	35	3	355	3	INO80C	18	33060445	Missense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	30354691	33060445	45016803	49	10367											
DNMT1	1786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	10291231	10291231	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaaaagggatttgactttAgccaggtagccctcctacag	9	9	0	1	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_001130823	exon4	c.T240C	p.A80A	GACTTTAGCCAGG		61	8	0.13	90	0	0				0	0					G	10291231	A	G	10291231	2	3	144	1	0	0	0	0	0	0	0	1	4702	407	15	4		4	DNMT1	19	10291231	Silent	SNP	A	TCGA-ZM-AA0E-01A-12D-A435-10		10291231	48837752	50	10368											
SMARCA4	6597	mdanderson.org	37	chr19	11097625	11097625	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccaggaccctcgggcgtgCcccccgggatgccaggccag	14	19	0	0	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_003072	exon5	c.C805T	p.P269S	GGCGTGCCCCCCG		15	2	0.13	20	0	0				0	0					T	11097625	C	T	11097625	3	4	144	1	0	0	0	0	1	0	0	0	14823	739	26	2	819	2	SMARCA4	19	11097625	Missense_Mutation	SNP	C	TCGA-ZM-AA0E-01A-12D-A435-10	806394	11097625	48031358	51	10369											
INSL3	3640	mdanderson.org	37	chr19	17927833	17927833	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcggccaccagcccatggaGcagatgtcgtctctccagcc	11	16	1	1	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_001265587	exon3	c.C321A	p.C107X	CATGGAGCAGATG		34	3	0.09	48	0	0				8	0	0				T	17927833	G	T	17927833	4	4	144	1	0	0	0	0	0	1	0	0	7810	971	34	2	173	2	INSL3	19	17927833	Nonsense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	6830208	17927833	41201150	52	10370											
CPT1C	126129	mdanderson.org	37	chr19	50215119	50215119	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggacaagcaccaggctctGctgaaggcagccatgagcgg	15	11	1	2	rs375017702	alternate_allele	TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_001199752	exon17	c.G1920A	p.L640L	GGCTCTGCTGAAG		31	3	0.1	69	0	0				4	0	0				A	50215119	G	A	50215119	2	1	144	1	0	0	0	0	0	0	0	1	3856	1306	46	2		2	CPT1C	19	50215119	Silent	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	32287286	50215119	8913864	53	10371											
CLEC11A	6320	broad.mit.edu;mdanderson.org	37	chr19	51227265	51227265	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatggaggaggaccagggggAggaagaggaggaggaagcaa	22	3	0	1	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	CLEC11A	NM_002975	exon2	c.A251G	p.E84G	AGGGGGAGGAAGA		89	5	0.06	119	0	0		23		2	0	0				G	51227265	A	G	51227265	3	3	144	1	0	0	0	0	1	0	0	0	3519	304	11	4	257	4	CLEC11A	19	51227265	Missense_Mutation	SNP	A	TCGA-ZM-AA0E-01A-12D-A435-10	1012146	51227265	7901718	54	10372											
IL11	3589	mdanderson.org	37	chr19	55879667	55879667	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcagggaagagccacctgCccggcgcagccactgcacgt	12	16	1	1	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_000641	exon4	c.G340T	p.A114S	CACCTGCCCGGCG		36	3	0.08	68	0	0				0	0					A	55879667	C	A	55879667	3	1	144	1	0	0	0	0	1	0	0	0	7665	739	26	2	267	2	IL11	19	55879667	Missense_Mutation	SNP	C	TCGA-ZM-AA0E-01A-12D-A435-10	4652402	55879667	3249316	55	10373											
RPS5	6193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	58904766	58904766	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacgccatcatcaacagtgGtccccgggaggactccacac	10	15	2	0	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_001009	exon4	c.G359T	p.G120V	ACAGTGGTCCCCG		33	8	0.24	51	0	0				1930	568	0.29				T	58904766	G	T	58904766	3	4	144	1	0	0	0	0	1	0	0	0	13699	1261	44	3	369	3	RPS5	19	58904766	Missense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	3025099	58904766	224217	56	10374											
VSTM2L	128434	mdanderson.org	37	chr20	36560151	36560151	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgctggagatccagtggtGgtatgtacggagccaccggg	16	10	0	1	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	VSTM2L,NS,carcinoma,0,1	VSTM2L	NM_080607	exon2	c.G236T	p.W79L	AGTGGTGGTATGT		26	3	0.12	44	0	0		0	1	0	0					T	36560151	G	T	36560151	3	4	144	1	0	0	0	0	1	0	0	0	17289	1357	47	3	242	3	VSTM2L	20	36560151	Missense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10		36560151	26465369	57	10375											
WISP2	8839	mdanderson.org	37	chr20	43348565	43348565	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cccagctgtgcccgacaccaTgtacctgcccctggccacct	8	20	0	0	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_003881	exon2	c.T88A	p.C30S	ACACCATGTACCT		39	3	0.08	75	0	0				0	0					A	43348565	T	A	43348565	3	1	144	1	0	0	0	0	1	0	0	0	17432	1464	51	5	94	5	WISP2	20	43348565	Missense_Mutation	SNP	T	TCGA-ZM-AA0E-01A-12D-A435-10	6788414	43348565	19676955	58	10376											
ZNF217	7764	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr20	52194891	52194891	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	acctgtatgcgttctgagatGaatattgaggtaataatttg	10	4	1	3	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_006526	exon2	c.C1465T	p.H489Y	TGAGATGAATATT		471	39	0.08	548	0	0				8	1	0.13				A	52194891	G	A	52194891	3	1	144	1	0	0	0	0	1	0	0	0	17829	1290	45	3	1693	3	ZNF217	20	52194891	Missense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	8846326	52194891	10830629	59	10377											
RRP1	8568	ucsc.edu;bcgsc.ca	37	chr21	45222243	45222243	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aagacgaagaagcagaagcgTctgctcaggttgcagcagga	14	8	2	3	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	RRP1	NM_003683	exon12	c.T1098A	p.R366R	GAAGCGTCTGCTC		42	4	0.1	80	0	0		23		245	0	0				A	45222243	T	A	45222243	2	1	144	1	0	0	0	0	0	0	0	1	13736	1654	58	5		5	RRP1	21	45222243	Silent	SNP	T	TCGA-ZM-AA0E-01A-12D-A435-10		45222243	2907652	60	10378											
KRTAP10-10	353333	mdanderson.org	37	chr21	46058034	46058034	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttccctcctctgccgccccGtgtgctcccgccctgcctgc	8	22	1	0	rs1785472	by2hit2allele	TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_181688	exon1	c.G700A	p.V234M	CGCCCCGTGTGCT		62	4	0.06	85	0	0				0	0					A	46058034	G	A	46058034	3	1	144	1	0	0	0	0	1	0	0	0	8548	1145	40	1	702	1	KRTAP10-10	21	46058034	Missense_Mutation	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10	835791	46058034	2071861	61	10379											
CACNA1I	8911	mdanderson.org	37	chr22	40061521	40061521	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtcatcagccgggcgccGggcctgaagctggtggtgga	18	10	2	1	rs374991740	alternate_allele	TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	CACNA1I_ENST00000402142,NS,carcinoma,+1,2	CACNA1I_ENST00000402142	NM_021096	exon22	c.G3870T	p.P1290P	GGCGCCGGGCCTG		51	3	0.06	66	0	0		1	2	0	0					T	40061521	G	T	40061521	2	4	144	1	0	0	0	0	0	0	0	1	2564	1103	39	1		1	CACNA1I	22	40061521	Silent	SNP	G	TCGA-ZM-AA0E-01A-12D-A435-10		40061521	11243045	62	10380											
MAGEE2	139599	mdanderson.org	37	chrX	75004549	75004549	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctgagaaactccagcatcTcggactgctggatagacccc	9	14	2	2	novel		TCGA-ZM-AA0E-01A-12D-A435-10	TCGA-ZM-AA0E-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dbb79a24-d11f-4205-b2b6-a9cd8d31a869	22c71019-10f2-4bec-b3a6-2640f303435e	.	.	NM_138703	exon1	c.A338G	p.E113G	AGCATCTCGGACT		54	3	0.06	68	0	0				0	0					C	75004549	T	C	75004549	3	2	144	1	0	0	0	0	1	0	0	0	9235	1551	54	4	1237	4	MAGEE2	23	75004549	Missense_Mutation	SNP	T	TCGA-ZM-AA0E-01A-12D-A435-10		75004549	80266011	63	10381											
BMP8B	656	mdanderson.org	37	chr1	40226206	40226206	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttggtgggtgcacagcacGccttggggactgcgtctggc	17	11	1	0	rs147897246	bycluster;byfrequency;alternate_allele	TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	BMP8B,NS,carcinoma,+1,1	BMP8B	NM_001720	exon7	c.C1094A	p.A365E	CAGCACGCCTTGG		52	3	0.06	44	1	0.0227272727		1	1	1	0	0				T	40226206	G	T	40226206	3	4	145	1	0	0	0	0	1	0	0	0	1466	1087	38	1	118	1	BMP8B	1	40226206	Missense_Mutation	SNP	G	TCGA-ZM-AA0F-01A-21D-A435-10		40226206	209024415	1	10382											
DDX20	11218	mdanderson.org	37	chr1	112298730	112298730	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtgctgttggcggagccgGccgacttcgagtcactgctg	15	11	1	0	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_007204	exon1	c.G184T	p.A62S	GAGCCGGCCGACT		21	2	0.1	18	0	0				0	0					T	112298730	G	T	112298730	3	4	145	1	0	0	0	0	1	0	0	0	4371	1203	42	2	186	2	DDX20	1	112298730	Missense_Mutation	SNP	G	TCGA-ZM-AA0F-01A-21D-A435-10	72072524	112298730	136951891	2	10383											
RFWD2	64326	mdanderson.org	37	chr1	176175758	176175758	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gagttgatgagcccgttgcaGaggggggcgaggagaggtcg	21	6	0	4	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_022457	exon1	c.C357A	p.L119L	GTTGCAGAGGGGG		34	3	0.09	24	0	0				6	0	0				T	176175758	G	T	176175758	2	4	145	1	0	0	0	0	0	0	0	1	13311	929	33	3		3	RFWD2	1	176175758	Silent	SNP	G	TCGA-ZM-AA0F-01A-21D-A435-10	63877028	176175758	73074863	3	10384											
PPP1R15B	84919	broad.mit.edu	37	chr1	204378635	204378636	+	Frame_Shift_Del	DEL	AT	AT	-													caaaccttttttcttttgacAtgtgtgtgtcttcctccaga					novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	AT	AT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	PPP1R15B	NM_032833	exon1	c.1904_1905del	p.635_635del	TTTGACATGTGTG		103	8	0.08	83	0	0		67		9	0	0				-	204378636	AT	-	204378635	7	5	145	1	0	1	0	1	0	0	0	0	12412	214	8	0	244	0	PPP1R15B	1	204378635	Frame_Shift_Del	DEL	AT	TCGA-ZM-AA0F-01A-21D-A435-10	28202877	204378635	44871986	4	10385											
VRK2	7444	bcgsc.ca;mdanderson.org	37	chr2	58316777	58316777	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttcacagttggatgtactGgaatatatacatgaaaatga	8	4	1	2	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	VRK2	NM_001130480	exon7	c.G462T	p.L154L	TGTACTGGAATAT		553	13	0.02	407	0	0		46		8	1	0.13	rescued with RNA-seq			T	58316777	G	T	58316777	2	4	145	1	0	0	0	0	0	0	0	1	17279	1335	47	3		3	VRK2	2	58316777	Silent	SNP	G	TCGA-ZM-AA0F-01A-21D-A435-10		58316777	184882596	5	10386			1	21		2	2	40	N	G_A	4.031349e-05
VRK2	7444	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	58316816	58316816	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatatgttcatggtgatatAaaagcagcaaatctactttt	7	5	2	1	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	VRK2	NM_001130480	exon7	c.A501G	p.I167M	TGATATAAAAGCA		629	16	0.03	458	0	0		46		15	1	0.07	rescued with RNA-seq			G	58316816	A	G	58316816	3	3	145	1	0	0	0	0	1	0	0	0	17279	352	13	4	523	4	VRK2	2	58316816	Missense_Mutation	SNP	A	TCGA-ZM-AA0F-01A-21D-A435-10	39	58316816	184882557	6	10387			1	21		2	2	40	N	G_A	4.031349e-05
DNAJC10	54431	bcgsc.ca;mdanderson.org	37	chr2	183582950	183582950	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acttggagtgtccaaaactgCaagcagtagagaaataagac	10	7	0	2	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	DNAJC10,NS,malignant_melanoma,+1,1	DNAJC10	NM_001271581	exon3	c.C137T	p.A46V	AAACTGCAAGCAG		104	5	0.05	77	0	0		76	1	16	0	0				T	183582950	C	T	183582950	3	4	145	1	0	0	0	0	1	0	0	0	4656	710	25	2	139	2	DNAJC10	2	183582950	Missense_Mutation	SNP	C	TCGA-ZM-AA0F-01A-21D-A435-10	125266134	183582950	59616423	7	10388											
NCL	4691	hgsc.bcm.edu;broad.mit.edu	37	chr2	232325382	232325384	+	In_Frame_Del	DEL	TCC	TCC	-													agaatctaatttaagtacctTcctcctcctcttcttcctcc					novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	TCC	TCC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	NCL	NM_005381	exon4	c.808_810del	p.270_270del	GTACCTTCCTCCT		196	16	0.08	142	0	0		80		215	0	0				-	232325384	TCC	-	232325382	7	5	145	1	0	1	0	1	0	0	0	0	10272	1783	62	0	1367	0	NCL	2	232325382	In_Frame_Del	DEL	TCC	TCGA-ZM-AA0F-01A-21D-A435-10	48742432	232325382	10873991	8	10389											
FGD5	152273	mdanderson.org	37	chr3	14940334	14940334	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaccaagtgctcctcacagGtgggccccacaggagatcaa	11	13	2	1	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_152536	exon7	c.3154+1G>T	.	TCACAGGTGGGCC		52	3	0.06	39	0	0				0	0					T	14940334	G	T	14940334	5	4	145	1	0	0	0	0	0	0	1	0	5868	1275	44	3	3181	3	FGD5	3	14940334	Splice_Site	SNP	G	TCGA-ZM-AA0F-01A-21D-A435-10		14940334	183082096	9	10390											
SATB1	6304	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	18458414	18458414	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttggcctgggcagcagagCtatgtgaataacctagagac	12	9	0	3	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	SATB1,NS,carcinoma,-1,1	SATB1	NM_002971	exon3	c.G368A	p.S123N	GCAGAGCTATGTG		99	6	0.06	83	0	0		-1	1	4	0	0				T	18458414	C	T	18458414	3	4	145	1	0	0	0	0	1	0	0	0	13905	797	28	2	1959	2	SATB1	3	18458414	Missense_Mutation	SNP	C	TCGA-ZM-AA0F-01A-21D-A435-10	3518080	18458414	179564016	10	10391											
STAB1	23166	mdanderson.org	37	chr3	52557097	52557097	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgggatcagcacgtgcaatGggaagctgctggatgtgctg	16	8	1	0	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_015136	exon63	c.G6967T	p.G2323W	TGCAATGGGAAGC		46	3	0.07	57	0	0				9	0	0				T	52557097	G	T	52557097	3	4	145	1	0	0	0	0	1	0	0	0	15292	1348	47	3	7217	3	STAB1	3	52557097	Missense_Mutation	SNP	G	TCGA-ZM-AA0F-01A-21D-A435-10	34098683	52557097	145465333	11	10392											
TNIP2	79155	mdanderson.org	37	chr4	2749517	2749517	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctcgttggccaaggagcgGcacaggacgtcactggcggc	16	12	2	0	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_024309	exon2	c.C432T	p.C144C	GGAGCGGCACAGG		42	3	0.07	54	0	0				8	0	0				A	2749517	G	A	2749517	2	1	145	1	0	0	0	0	0	0	0	1	16374	1195	42	2		2	TNIP2	4	2749517	Silent	SNP	G	TCGA-ZM-AA0F-01A-21D-A435-10		2749517	188404759	12	10393											
KIT	3815	broad.mit.edu;bcgsc.ca	37	chr4	55593628	55593654	+	In_Frame_Del	DEL	GAAACAATTATGTTTACATAGACCCAA	GAAACAATTATGTTTACATAGACCCAA	-													ggttgttgaggagataaatgGaaacaattatgtttacatag					novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	GAAACAATTATGTTTACATAGACCCAA	GAAACAATTATGTTTACATAGACCCAA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	KIT,caecum,carcinoma,+1,5	KIT	NM_000222	exon11	c.1694_1720del	p.565_574del	TAAATGGAAACAA		158	8	0.05	126	0	0		7396	5	0	0					-	55593654	GAAACAATTATGTTTACATAGACCCAA	-	55593628	7	5	145	1	0	1	0	1	0	0	0	0	8371	1174	41	0	1736	0	KIT	4	55593628	In_Frame_Del	DEL	GAAACAATTATGTTTACATAGACCCAA	TCGA-ZM-AA0F-01A-21D-A435-10	52844111	55593628	135560648	13	10394											
DSPP	1834	bcgsc.ca	37	chr4	88537036	88537036	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatagcagtgacagcagtgaCagcagcgacagcagtgatag	14	8	0	3	rs367922244		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	DSPP,NS,carcinoma,0,1	DSPP	NM_014208	exon5	c.C3222T	p.D1074D	CAGTGACAGCAGC		84	11	0.13	60	0	0		174	1	0	0					T	88537036	C	T	88537036	2	4	145	1	0	0	0	0	0	0	0	1	4808	477	17	3		3	DSPP	4	88537036	Silent	SNP	C	TCGA-ZM-AA0F-01A-21D-A435-10	32943408	88537036	102617240	14	10395											
JMY	133746	mdanderson.org	37	chr5	78532852	78532852	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagccttctgggggacccgCggctgcggagtcctggcagc	17	14	1	0	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_152405	exon1	c.C379T	p.R127W	GACCCGCGGCTGC		39	3	0.08	21	0	0				0	0					T	78532852	C	T	78532852	3	4	145	1	0	0	0	0	1	0	0	0	8000	759	27	1	381	1	JMY	5	78532852	Missense_Mutation	SNP	C	TCGA-ZM-AA0F-01A-21D-A435-10		78532852	102382408	15	10396											
SLC12A2	6558	broad.mit.edu	37	chr5	127420309	127420309	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaacaccatggacgctgtGcccaggatcgatcactaccg	9	15	1	0	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	SLC12A2	NM_001046	exon1	c.G663T	p.V221V	CGCTGTGCCCAGG		244	10	0.04	158	2	0.0126582278		119		9	0	0				T	127420309	G	T	127420309	2	4	145	1	0	0	0	0	0	0	0	1	14437	1306	46	2		2	SLC12A2	5	127420309	Silent	SNP	G	TCGA-ZM-AA0F-01A-21D-A435-10	48887457	127420309	53494951	16	10397											
TBP	6908	broad.mit.edu;mdanderson.org	37	chr6	170871034	170871034	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcagcagcagcaGcagcaacagcaacagcagca	11	14	0	0	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	TBP	NM_003194	exon3	c.G210A	p.Q70Q	GCAGCAGCAGCAA		87	4	0.05	59	1	0.0169491525		58		6	0	0				A	170871034	G	A	170871034	2	1	145	1	0	0	0	0	0	0	0	1	15703	962	34	2		2	TBP	6	170871034	Silent	SNP	G	TCGA-ZM-AA0F-01A-21D-A435-10		170871034	244033	17	10398											
EPPK1	83481	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr8	144940633	144940633	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggtggccgcctgcgcctcCagcagcaccagggccgtgcc	14	19	0	0	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_031308	exon1	c.G6789A	p.L2263L	CGCCTCCAGCAGC		77	7	0.09	46	0	0				3	0	0				T	144940633	C	T	144940633	2	4	145	1	0	0	0	0	0	0	0	1	5218	581	21	3		3	EPPK1	8	144940633	Silent	SNP	C	TCGA-ZM-AA0F-01A-21D-A435-10		144940633	1423389	18	10399											
DNAI1	27019	mdanderson.org	37	chr9	34483453	34483453	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcttcatttagagcatcaGcataggcagaggaaccagga	11	8	3	2	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_012144	exon2	c.G56T	p.S19I	GCATCAGCATAGG		47	3	0.06	33	0	0				0	0					T	34483453	G	T	34483453	3	4	145	1	0	0	0	0	1	0	0	0	4636	971	34	2	62	2	DNAI1	9	34483453	Missense_Mutation	SNP	G	TCGA-ZM-AA0F-01A-21D-A435-10		34483453	106729978	19	10400											
CNNM1	26507	mdanderson.org	37	chr10	101089191	101089191	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcggtgggtgtcaggctccGggactgctgcagccgaggcg	19	11	1	0	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_020348	exon1	c.G47T	p.R16L	GGCTCCGGGACTG		24	3	0.13	22	0	0				0	0					T	101089191	G	T	101089191	3	4	145	1	0	0	0	0	1	0	0	0	3635	1116	39	1	49	1	CNNM1	10	101089191	Missense_Mutation	SNP	G	TCGA-ZM-AA0F-01A-21D-A435-10		101089191	34445556	20	10401											
CCDC73	493860	mdanderson.org	37	chr11	32739692	32739692	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcataatgaatttctgctTcctaagtcaaaaagaaaaag	5	7	3	2	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_001008391	exon3	c.G137T	p.X46L	TCTGCTTCCTAAG		40	3	0.08	28	0	0				0	0					A	32739692	T	A	32739692	3	1	145	1	0	0	0	0	1	0	0	0	2866	1797	62	5	3166	5	CCDC73	11	32739692	Missense_Mutation	SNP	T	TCGA-ZM-AA0F-01A-21D-A435-10		32739692	102266824	21	10402											
TCN1	6947	hgsc.bcm.edu;mdanderson.org	37	chr11	59620746	59620746	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttattgttggcacataggccCtgaatacaggtgatataggg	12	6	0	2	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	TCN1,NS,carcinoma,-2,2	TCN1	NM_001062	exon8	c.G1170T	p.Q390H	TAGGCCCTGAATA		119	5	0.04	92	0	0		-2	2	2	0	0				A	59620746	C	A	59620746	3	1	145	1	0	0	0	0	1	0	0	0	15765	680	24	3	139	3	TCN1	11	59620746	Missense_Mutation	SNP	C	TCGA-ZM-AA0F-01A-21D-A435-10	26881054	59620746	75385770	22	10403											
MAML2	84441	broad.mit.edu	37	chr11	95825254	95825254	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttgttgctgctgctgctgCtgttgttgctgctgctgctg	14	9	0	0	rs61749250	bycluster	TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	MAML2,caecum,carcinoma,0,2	MAML2	NM_032427	exon2	c.G1941A	p.Q647Q	CTGCTGCTGTTGT		97	6	0.06	60	1	0.0166666667		94	2	0	0					T	95825254	C	T	95825254	2	4	145	1	0	0	0	0	0	0	0	1	9255	796	28	2		2	MAML2	11	95825254	Silent	SNP	C	TCGA-ZM-AA0F-01A-21D-A435-10	36204508	95825254	39181262	23	10404											
FIGNL2	401720	mdanderson.org	37	chr12	52215308	52215308	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attcgccgttgtccgcggcgGggtaggaggctccgtcagcc	16	13	1	0	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_001013690	exon2	c.C890A	p.P297H	GCGGCGGGGTAGG		15	2	0.13	8	0	0				0	0					T	52215308	G	T	52215308	3	4	145	1	0	0	0	0	1	0	0	0	5925	1232	43	3	1075	3	FIGNL2	12	52215308	Missense_Mutation	SNP	G	TCGA-ZM-AA0F-01A-21D-A435-10		52215308	81636587	24	10405											
MTSS1L	92154	mdanderson.org	37	chr16	70697713	70697713	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggggtgggcgtctcctccGtgggggtggccgacagagca	20	10	1	1	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_138383	exon15	c.C2111A	p.T704K	TCCTCCGTGGGGG		19	2	0.11	17	0	0				1	0	0				T	70697713	G	T	70697713	3	4	145	1	0	0	0	0	1	0	0	0	10010	1145	40	1	136	1	MTSS1L	16	70697713	Missense_Mutation	SNP	G	TCGA-ZM-AA0F-01A-21D-A435-10		70697713	19657040	25	10406											
HYDIN	54768	mdanderson.org	37	chr16	70972656	70972656	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagctcccttgtgcttgcGttctgtgaggggaacagaga	14	8	1	3	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	LOC652153,NS,carcinoma,0,4	LOC652153	NM_001270974	exon44	c.C6856A	p.R2286S	GCTTGCGTTCTGT		63	3	0.05	54	0	0		0	4	0	0					T	70972656	G	T	70972656	3	4	145	1	0	0	0	0	1	0	0	0	7510	1145	40	1	8681	1	HYDIN	16	70972656	Missense_Mutation	SNP	G	TCGA-ZM-AA0F-01A-21D-A435-10	274943	70972656	19382097	26	10407											
PRKCSH	5589	hgsc.bcm.edu	37	chr19	11558370	11558370	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggaggaggaggaggaGgaagaagaggctgaagaaga	22	1	0	5	rs77563879	bycluster	TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	PRKCSH,caecum,carcinoma,0,1	PRKCSH	NM_001001329	exon11	c.G966A	p.E322E	GGAGGAGGAAGAA		110	6	0.05	67	1	0.0149253731		0	1	4	0	0				A	11558370	G	A	11558370	2	1	145	1	0	0	0	0	0	0	0	1	12567	991	35	3		3	PRKCSH	19	11558370	Silent	SNP	G	TCGA-ZM-AA0F-01A-21D-A435-10		11558370	47570613	27	10408											
ZNF831	128611	mdanderson.org	37	chr20	57766775	57766775	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcaggggcgagagcaggtGccaggggatgcacgaaggcg	22	8	0	1	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_178457	exon1	c.G701T	p.C234F	GCAGGTGCCAGGG		56	3	0.05	37	0	0				0	0					T	57766775	G	T	57766775	3	4	145	1	0	0	0	0	1	0	0	0	18231	1319	46	2	703	2	ZNF831	20	57766775	Missense_Mutation	SNP	G	TCGA-ZM-AA0F-01A-21D-A435-10		57766775	5258745	28	10409											
LAMA5	3911	mdanderson.org	37	chr20	60886347	60886347	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caggatgccgggcgggctgaCggctgcggcgggaggcctgg	22	11	0	1	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	NM_005560	exon73	c.G9959A	p.R3320H	GGCTGACGGCTGC		63	3	0.05	58	0	0				5	0	0				T	60886347	C	T	60886347	3	4	145	1	0	0	0	0	1	0	0	0	8647	536	19	1	1160	1	LAMA5	20	60886347	Missense_Mutation	SNP	C	TCGA-ZM-AA0F-01A-21D-A435-10	3119572	60886347	2139173	29	10410											
BAGE	85319	broad.mit.edu	37	chr21	11064923	11064923	+	RNA	DEL	G	G	-													gcctgtaatcccggccacttGggaggctgaggcatgagaat					novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	.	.	.	.	.	CCACTTGGGAGGC		6	2	0.33	5	0	0				0	0					-	11064923	G	-	11064923	6	5	145	0	1	1	0	1	0	0	0	0	1289	1363	47	0		0	BAGE	21	11064923	RNA	DEL	G	TCGA-ZM-AA0F-01A-21D-A435-10		11064923	37064972	30	10411											
MAMLD1	10046	broad.mit.edu	37	chrX	149639635	149639635	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cactgccaccttgcagctgcAgcagcagcagcagcaacagc	10	16	0	0	novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	MAMLD1	NM_005491	exon3	c.A1790T	p.Q597L	AGCTGCAGCAGCA		182	4	0.02	139	1	0.0071942446		263		0	0					T	149639635	A	T	149639635	3	4	145	1	0	0	0	0	1	0	0	0	9257	188	7	5	1800	5	MAMLD1	23	149639635	Missense_Mutation	SNP	A	TCGA-ZM-AA0F-01A-21D-A435-10		149639635	5630925	31	10412											
AVPR2	0	broad.mit.edu	37	chrX	153171699	153171710	+	In_Frame_Del	DEL	CGCCGCAGGGGA	CGCCGCAGGGGA	-													catcagagaggcctggggggCgccgcaggggacgccggaca					novel		TCGA-ZM-AA0F-01A-21D-A435-10	TCGA-ZM-AA0F-10A-01D-A438-10	CGCCGCAGGGGA	CGCCGCAGGGGA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8a8a23d5-716d-4e90-ab83-cfa3c3eccdad	29ee93c7-6fcd-4a76-bc26-beaa899b9be9	.	AVPR2	NM_001146151	exon2	c.739_750del	p.247_250del	GGGGGGCGCCGCA		71	12	0.17	50	0	0		43		0	0					-	153171710	CGCCGCAGGGGA	-	153171699	7	5	145	1	0	1	0	1	0	0	0	0	1231	768	27	0	745	0	AVPR2	23	153171699	In_Frame_Del	DEL	CGCCGCAGGGGA	TCGA-ZM-AA0F-01A-21D-A435-10	3532064	153171699	2098861	32	10413											
ATAD3B	83858	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr1	1431185	1431185	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgttctgccccccagggcaCcccctgttgtaggcactggc	11	18	1	0	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	ATAD3B	NM_031921	exon16	c.C1935A	p.H645Q	AGGGCACCCCCTG		34	5	0.15	22	0	0		68		438	100	0.23				A	1431185	C	A	1431185	3	1	146	1	0	0	0	0	1	0	0	0	1073	506	18	3	1997	3	ATAD3B	1	1431185	Missense_Mutation	SNP	C	TCGA-ZM-AA0H-01A-11D-A435-10		1431185	247819436	1	10414											
PRDM16	63976	mdanderson.org	37	chr1	3328826	3328826	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgactgcaacgggcgccGccggggactccatcaaggcc	14	15	1	1	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_022114	exon9	c.G2065T	p.A689S	GGCGCCGCCGGGG		40	3	0.08	41	0	0				0	0					T	3328826	G	T	3328826	3	4	146	1	0	0	0	0	1	0	0	0	12508	1087	38	1	2099	1	PRDM16	1	3328826	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	1897641	3328826	245921795	2	10415											
TARDBP	23435	bcgsc.ca	37	chr1	11082189	11082189	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttcttatagattgcgcaGtctctttgtggagaggactt	10	6	2	2	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	TARDBP	NM_007375	exon6	c.G723T	p.Q241H	TGCGCAGTCTCTT		62	4	0.06	92	0	0		31		29	0	0				T	11082189	G	T	11082189	3	4	146	1	0	0	0	0	1	0	0	0	15613	1020	36	3	741	3	TARDBP	1	11082189	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	7753363	11082189	238168432	3	10416											
WASF2	10163	broad.mit.edu	37	chr1	27736326	27736328	+	In_Frame_Del	DEL	GGA	GGA	-													aagggggaggagggggccccGgaggaggaggaggaggggga					novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	GGA	GGA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	WASF2	NM_006990	exon8	c.1197_1199del	p.399_400del	GGCCCCGGAGGAG		164	0	0	131	0	0		41		6	0	0				-	27736328	GGA	-	27736326	7	5	146	1	0	1	0	1	0	0	0	0	17312	1116	39	0	305	0	WASF2	1	27736326	In_Frame_Del	DEL	GGA	TCGA-ZM-AA0H-01A-11D-A435-10	16654137	27736326	221514295	4	10417											
WASF2	10163	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	27736390	27736390	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggacaagggaggtggtgGcagagttgggtagtcagctg	20	5	1	1	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	WASF2	NM_006990	exon8	c.C1135T	p.P379S	GTGGTGGCAGAGT		183	25	0.14	127	1	0.0078740157		41		7	1	0.14				A	27736390	G	A	27736390	3	1	146	1	0	0	0	0	1	0	0	0	17312	1203	42	2	369	2	WASF2	1	27736390	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	64	27736390	221514231	5	10418											
AK2	204	bcgsc.ca	37	chr1	33476435	33476435	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggccttctgatactaggCtgaaatagagaggaaacaag	11	8	1	3	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	AK2	NM_013411	exon8	c.695-1G>T	.	ACTAGGCTGAAAT		32	6	0.19	45	0	0		27		5	0	0				A	33476435	C	A	33476435	5	1	146	1	0	0	0	0	0	0	1	0	437	811	28	2	8	2	AK2	1	33476435	Splice_Site	SNP	C	TCGA-ZM-AA0H-01A-11D-A435-10	5740045	33476435	215774186	6	10419											
PTGER3	5733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	71512740	71512740	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgccgagcagcacagcgcggGtggcacgcgtcttcatgtgg	16	13	2	0	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001126044	exon1	c.C521T	p.T174I	GCGCGGGTGGCAC		59	9	0.15	45	0	0				0	0					A	71512740	G	A	71512740	3	1	146	1	0	0	0	0	1	0	0	0	12793	1261	44	3	970	3	PTGER3	1	71512740	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	38036305	71512740	177737881	7	10420											
AMY2A	279	broad.mit.edu	37	chr1	104160107	104160107	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accattgggttctgctgggcTcagtattccccaaatacaca	8	12	2	0	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	AMY2A	NM_000699	exon1	c.T45C	p.A15A	CTGGGCTCAGTAT		668	8	0.01	468	0	0		36		1	0	0				C	104160107	T	C	104160107	2	2	146	1	0	0	0	0	0	0	0	1	590	1538	54	4		4	AMY2A	1	104160107	Silent	SNP	T	TCGA-ZM-AA0H-01A-11D-A435-10	32647367	104160107	145090514	8	10421											
NTNG1	22854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	107866930	107866930	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctacatgtgcaataatgaGtgtgatgcgagtacccctga	10	10	0	3	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_014917	exon3	c.G273A	p.E91E	TAATGAGTGTGAT		184	12	0.07	140	0	0				7	0	0				A	107866930	G	A	107866930	2	1	146	1	0	0	0	0	0	0	0	1	10751	1020	36	3		3	NTNG1	1	107866930	Silent	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	3706823	107866930	141383691	9	10422											
PAQR6	79957	broad.mit.edu;mdanderson.org	37	chr1	156216033	156216033	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagacatgatgccatcttcCcagaacacctagggtagtgg	10	12	1	3	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	PAQR6	NM_001272104	exon3	c.G60T	p.W20C	ATCTTCCCAGAAC		66	4	0.06	44	0	0		23		7	1	0.14				A	156216033	C	A	156216033	3	1	146	1	0	0	0	0	1	0	0	0	11485	624	22	3	1337	3	PAQR6	1	156216033	Missense_Mutation	SNP	C	TCGA-ZM-AA0H-01A-11D-A435-10	48349103	156216033	93034588	10	10423											
DARS2	55157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	173802622	173802622	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tcatgaaaatgcgggaatatCtctgtaatctgcatggtaag	10	6	3	1	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_018122	exon6	c.C601A	p.L201I	GAATATCTCTGTA		66	7	0.11	56	0	0				0	0					A	173802622	C	A	173802622	3	1	146	1	0	0	0	0	1	0	0	0	4266	913	32	3	623	3	DARS2	1	173802622	Missense_Mutation	SNP	C	TCGA-ZM-AA0H-01A-11D-A435-10	17586589	173802622	75447999	11	10424											
TOR1AIP1	26092	broad.mit.edu	37	chr1	179851685	179851685	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggtgcgggaaggatggggTgtgtacgtcacccccagggc	19	10	1	0	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	TOR1AIP1	NM_001267578	exon1	c.T48G	p.G16G	ATGGGGTGTGTAC		46	17	0.37	39	9	0.2307692308		58		2	1	0.5				G	179851685	T	G	179851685	2	3	146	1	0	0	0	0	0	0	0	1	16432	1683	59	4		4	TOR1AIP1	1	179851685	Silent	SNP	T	TCGA-ZM-AA0H-01A-11D-A435-10	6049063	179851685	69398936	12	10425											
OR2L3	391192	hgsc.bcm.edu	37	chr1	248224864	248224864	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catctatagcctgaggaacaAggaggtgatgggggccctga	15	8	1	3	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	OR2L3,NS,carcinoma,+1,1	OR2L3	NM_001004687	exon1	c.A881G	p.K294R	GGAACAAGGAGGT		66	4	0.06	53	1	0.0188679245		1	1	0	0					G	248224864	A	G	248224864	3	3	146	1	0	0	0	0	1	0	0	0	11055	72	3	4	883	4	OR2L3	1	248224864	Missense_Mutation	SNP	A	TCGA-ZM-AA0H-01A-11D-A435-10	68373179	248224864	1025757	13	10426											
RPS7	6201	broad.mit.edu;bcgsc.ca	37	chr2	3627893	3627894	+	Frame_Shift_Del	DEL	GA	GA	-													tggaaaggttcagccacagtGagagtggattttagtgtaac					novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	GA	GA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	RPS7	.	.	.	.	CACAGTGAGAGTG		68	8	0.12	90	0	0		13		22	0	0				-	3627894	GA	-	3627893	7	5	146	1	0	1	0	1	0	0	0	0	13711	1305	45	0		0	RPS7	2	3627893	Frame_Shift_Del	DEL	GA	TCGA-ZM-AA0H-01A-11D-A435-10		3627893	239571480	14	10427											
YWHAQ	10971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	9727624	9727624	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtatcaagttcagcaatGgcctcatcaaaagcctgata	8	9	4	1	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_006826	exon5	c.C597T	p.A199A	AGCAATGGCCTCA		166	20	0.12	145	0	0				117	14	0.12				A	9727624	G	A	9727624	2	1	146	1	0	0	0	0	0	0	0	1	17564	1335	47	3		3	YWHAQ	2	9727624	Silent	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	6099731	9727624	233471749	15	10428											
HEATR5B	54497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	37235845	37235845	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cacaggcgactgagtgttggTagttcaggttgtaccagtgt	14	7	1	1	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_019024	exon28	c.A4431G	p.L1477L	TGTTGGTAGTTCA		81	8	0.1	93	0	0				41	8	0.2				C	37235845	T	C	37235845	2	2	146	1	0	0	0	0	0	0	0	1	7072	1625	57	4		4	HEATR5B	2	37235845	Silent	SNP	T	TCGA-ZM-AA0H-01A-11D-A435-10	27508221	37235845	205963528	16	10429											
MTIF2	4528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	55479643	55479643	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tttggcatgctgaatagattCtacagtttgtttcatcactc	7	8	3	2	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_002453	exon8	c.G811A	p.E271K	TAGATTCTACAGT		171	30	0.18	160	0	0				17	1	0.06				T	55479643	C	T	55479643	3	4	146	1	0	0	0	0	1	0	0	0	9981	922	32	3	1408	3	MTIF2	2	55479643	Missense_Mutation	SNP	C	TCGA-ZM-AA0H-01A-11D-A435-10	18243798	55479643	187719730	17	10430											
POTEE	445582	broad.mit.edu	37	chr2	132021542	132021542	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtacgtggccatccaggcCgtgccgtccctgtacacctc	10	16	0	0	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001083538	exon15	c.C2514T	p.A838A	CCAGGCCGTGCCG		128	5	0.04	113	1	0.0088495575				0	0					T	132021542	C	T	132021542	2	4	146	1	0	0	0	0	0	0	0	1	12310	639	23	1		1	POTEE	2	132021542	Silent	SNP	C	TCGA-ZM-AA0H-01A-11D-A435-10	76541899	132021542	111177831	18	10431											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	141093382	141093382	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacccagtcaactgcaatgTccctgggccttttaaattca	6	14	2	0	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_018557	exon78	c.A11918G	p.D3973G	GCAATGTCCCTGG		117	13	0.11	144	0	0				0	0					C	141093382	T	C	141093382	3	2	146	1	0	0	0	0	1	0	0	0	8999	1667	58	4	1937	4	LRP1B	2	141093382	Missense_Mutation	SNP	T	TCGA-ZM-AA0H-01A-11D-A435-10	9071840	141093382	102105991	19	10432											
DNAJC10	54431	mdanderson.org	37	chr2	183583004	183583004	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	attggcattgaagttacatcCtgataaaaacccggtaggta	9	7	0	2	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001271581	exon3	c.C191A	p.P64H	TACATCCTGATAA		35	3	0.09	21	0	0				3	0	0				A	183583004	C	A	183583004	3	1	146	1	0	0	0	0	1	0	0	0	4656	681	24	3	193	3	DNAJC10	2	183583004	Missense_Mutation	SNP	C	TCGA-ZM-AA0H-01A-11D-A435-10	42489622	183583004	59616369	20	10433											
PECR	55825	mdanderson.org	37	chr2	216930061	216930061	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcacatgtagaaggtacccGtcaggttggtctcaagcaca	11	10	2	1	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_018441	exon3	c.C398T	p.T133M	GTACCCGTCAGGT		61	4	0.07	73	0	0				1	0	0				A	216930061	G	A	216930061	3	1	146	1	0	0	0	0	1	0	0	0	11763	1145	40	1	537	1	PECR	2	216930061	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	33347057	216930061	26269312	21	10434											
ATP2B2	491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	10417235	10417235	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	actgcacgtagacgggcgtgCactcaggcagccacggcttc	13	14	1	1	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001001331	exon11	c.G1295C	p.C432S	GGCGTGCACTCAG		120	14	0.12	116	0	0				0	0					G	10417235	C	G	10417235	3	3	146	1	0	0	0	0	1	0	0	0	1139	710	25	5	2488	5	ATP2B2	3	10417235	Missense_Mutation	SNP	C	TCGA-ZM-AA0H-01A-11D-A435-10		10417235	187605195	22	10435											
SLITRK3	22865	broad.mit.edu	37	chr3	164905991	164905991	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atactgccactaccacagccTcccccaggaggaaacagcac	7	17	0	0	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	SLITRK3,NS,carcinoma,-1,1	SLITRK3	NM_014926	exon2	c.A2628G	p.G876G	ACAGCCTCCCCCA		93	4	0.04	70	0	0		263	1	0	0					C	164905991	T	C	164905991	2	2	146	1	0	0	0	0	0	0	0	1	14797	1538	54	4		4	SLITRK3	3	164905991	Silent	SNP	T	TCGA-ZM-AA0H-01A-11D-A435-10	154488756	164905991	33116439	23	10436											
HTT	3064	broad.mit.edu	37	chr4	3076603	3076604	+	In_Frame_Ins	INS	-	-	CAG													tcgagtccctcaagtccttcINScagcagcagcagcagcagca					rs10618869		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	HTT	NM_002111	exon1	c.51_52insCAG	p.F17delinsFQ	GTCCTTCCAGCAG		8	3	0.38	6	0	0		221		0	0					CAG	3076604	-	CAG	3076603	7	5	146	1	0	1	1	0	0	0	0	0	7500	854	30	0	53	0	HTT	4	3076603	In_Frame_Ins	INS	-	TCGA-ZM-AA0H-01A-11D-A435-10		3076603	188077673	24	10437											
LIMCH1	22998	broad.mit.edu	37	chr4	41615586	41615586	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctctcctcctcgccacgGcagagatgattccttcgaca	7	17	1	2	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	LIMCH1	NM_014988	exon7	c.G590T	p.G197V	GCCACGGCAGAGA		108	4	0.04	111	0	0		233		0	0					T	41615586	G	T	41615586	3	4	146	1	0	0	0	0	1	0	0	0	8836	1203	42	2	644	2	LIMCH1	4	41615586	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	38538983	41615586	149538690	25	10438											
BEND4	389206	broad.mit.edu;mdanderson.org	37	chr4	42145560	42145560	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcgtcctcctcctcctcCtcttctggcagtgtagatga	7	16	2	2	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	BEND4	NM_001159547	exon3	c.G939A	p.E313E	CTCCTCCTCTTCT		79	4	0.05	95	0	0		67		3	0	0				T	42145560	C	T	42145560	2	4	146	1	0	0	0	0	0	0	0	1	1398	680	24	3		3	BEND4	4	42145560	Silent	SNP	C	TCGA-ZM-AA0H-01A-11D-A435-10	529974	42145560	149008716	26	10439											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	55602664	55602664	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgttgtgcttctattacagGctcgactacctgtgaagtgg	11	9	1	1	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	KIT,caecum,carcinoma,0,3	KIT	NM_000222	exon18	c.G2485C	p.A829P	TTACAGGCTCGAC		74	18	0.24	72	0	0		0	3	11	9	0.82				C	55602664	G	C	55602664	3	2	146	1	0	0	0	0	1	0	0	0	8371	1217	42	5	2555	5	KIT	4	55602664	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	13457104	55602664	135551612	27	10440											
LARP7	51574	mdanderson.org	37	chr4	113575239	113575239	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaggtgatcacgaacaaaGgtattggcagaagattttgg	12	4	1	3	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001267039	exon14	c.G1613T	p.R538M	AACAAAGGTATTG		85	4	0.05	81	0	0				343	0	0				T	113575239	G	T	113575239	3	4	146	1	0	0	0	0	1	0	0	0	8671	1000	35	3	1634	3	LARP7	4	113575239	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	57972575	113575239	77579037	28	10441											
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	138452613	138452613	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgagctgaagctcgtagctTgacttcagctcccgatctaa	10	11	2	3	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_019035	exon1	c.A630C	p.S210S	GTAGCTTGACTTC		62	6	0.1	69	0	0				0	0					G	138452613	T	G	138452613	2	3	146	1	0	0	0	0	0	0	0	1	11559	1799	63	4		4	PCDH18	4	138452613	Silent	SNP	T	TCGA-ZM-AA0H-01A-11D-A435-10	24877374	138452613	52701663	29	10442											
CHD1	1105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	98234123	98234123	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	caggataaccagctgctgacTtttgattggaatgagctgtg	12	7	0	3	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001270	exon9	c.A1202T	p.K401M	GCTGACTTTTGAT		56	10	0.18	71	0	0				0	0					A	98234123	T	A	98234123	3	1	146	1	0	0	0	0	1	0	0	0	3345	1609	56	5	4038	5	CHD1	5	98234123	Missense_Mutation	SNP	T	TCGA-ZM-AA0H-01A-11D-A435-10		98234123	82681137	30	10443											
RUFY1	80230	mdanderson.org	37	chr5	179036460	179036460	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctcctaccccaagccggtGcgagtgtgcgacagctgcca	11	17	0	0	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_025158	exon18	c.G2067T	p.V689V	GCCGGTGCGAGTG		35	3	0.09	38	0	0				99	0	0				T	179036460	G	T	179036460	2	4	146	1	0	0	0	0	0	0	0	1	13789	1306	46	2		2	RUFY1	5	179036460	Silent	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	80802337	179036460	1878800	31	10444											
HIST1H3C	8352	broad.mit.edu	37	chr6	26045967	26045968	+	Frame_Shift_Del	DEL	TG	TG	-													actcttcgaagacaccaatcTgtgcgctattcacgctaaac					novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	TG	TG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	HIST1H3C	NM_003531	exon1	c.329_330del	p.110_110del	CCAATCTGTGCGC		63	7	0.11	59	0	0		34		4	0	0				-	26045968	TG	-	26045967	7	5	146	1	0	1	0	1	0	0	0	0	7197	1580	55	0	331	0	HIST1H3C	6	26045967	Frame_Shift_Del	DEL	TG	TCGA-ZM-AA0H-01A-11D-A435-10		26045967	145069100	32	10445											
ZNF184	7738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	27419641	27419641	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggatgaaccataactgaagGttttcccacattcatgacac	8	10	1	3	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_007149	exon6	c.C1697T	p.T566I	CTGAAGGTTTTCC		65	9	0.14	53	0	0				9	3	0.33				A	27419641	G	A	27419641	3	1	146	1	0	0	0	0	1	0	0	0	17808	1261	44	3	562	3	ZNF184	6	27419641	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	1373674	27419641	143695426	33	10446											
MICB	4277	ucsc.edu;mdanderson.org	37	chr6	31474930	31474930	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atggggtatctttgagccacAacacccagcagtggggggat	14	9	1	1	rs201701343		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	MICB	NM_005931	exon4	c.A745G	p.N249D	AGCCACAACACCC		123	18	0.15	119	6	0.0504201681		26		8	2	0.25				G	31474930	A	G	31474930	3	3	146	1	0	0	0	0	1	0	0	0	9622	130	5	4	759	4	MICB	6	31474930	Missense_Mutation	SNP	A	TCGA-ZM-AA0H-01A-11D-A435-10	4055289	31474930	139640137	34	10447											
COL11A2	1302	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	33139321	33139321	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaccctgcactccatctcGgccagtcgggccaatggggc	13	15	1	0	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_080680	exon43	c.C3181A	p.R1061R	CATCTCGGCCAGT		81	6	0.07	81	0	0				0	0					T	33139321	G	T	33139321	2	4	146	1	0	0	0	0	0	0	0	1	3691	1124	39	1		1	COL11A2	6	33139321	Silent	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	1664391	33139321	137975746	35	10448											
EZR	7430	mdanderson.org	37	chr6	159188482	159188482	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gggggtggtgggggcgggggTgctgtcatcaccaggtgcag	23	7	2	0	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_003379	exon12	c.A1407C	p.A469A	CGGGGGTGCTGTC		48	14	0.29	35	2	0.0571428571				67	3	0.04				G	159188482	T	G	159188482	2	3	146	1	0	0	0	0	0	0	0	1	5363	1683	59	4		4	EZR	6	159188482	Silent	SNP	T	TCGA-ZM-AA0H-01A-11D-A435-10	126049161	159188482	11926585	36	10449											
IGF2R	3482	broad.mit.edu	37	chr6	160445736	160445736	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaatgtttgtagagacataGgtatgaatctttgtggggct	12	4	2	2	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	IGF2R	NM_000876	exon5	c.G646T	p.D216Y	GACATAGGTATGA		63	3	0.05	63	0	0		251		1	0	0				T	160445736	G	T	160445736	5	4	146	1	0	0	0	0	0	0	1	0	7619	1014	35	3	664	3	IGF2R	6	160445736	Splice_Site	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	1257254	160445736	10669331	37	10450											
MLLT4	4301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	168276034	168276034	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaaattctcgactggctGctgaggtttacaaagacatg	11	7	1	3	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001040000	exon5	c.G598A	p.A200T	CTGGCTGCTGAGG		68	7	0.1	77	0	0				1	0	0				A	168276034	G	A	168276034	3	1	146	1	0	0	0	0	1	0	0	0	9676	1319	46	2	616	2	MLLT4	6	168276034	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	7830298	168276034	2839033	38	10451											
LRCH4	4034	mdanderson.org	37	chr7	100179705	100179705	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgccgatgtcagggggcaGggctcccagcttgttgttgc	17	10	1	0	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_002319	exon3	c.C451A	p.L151M	GGGGCAGGGCTCC		47	3	0.06	33	0	0				30	0	0				T	100179705	G	T	100179705	3	4	146	1	0	0	0	0	1	0	0	0	8979	991	35	3	1664	3	LRCH4	7	100179705	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10		100179705	58958958	39	10452											
NRG1	3084	bcgsc.ca	37	chr8	32617775	32617775	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agccactctgtaatcgtgatGtcatccgtagaaaacagtag	9	9	2	2	rs373062517		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	NRG1	NM_013956	exon12	c.G1134T	p.M378I	CGTGATGTCATCC		128	6	0.05	102	0	0		260		0	0					T	32617775	G	T	32617775	3	4	146	1	0	0	0	0	1	0	0	0	10694	1377	48	3	2757	3	NRG1	8	32617775	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10		32617775	113746247	40	10453											
RAB11FIP1	80223	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	37756869	37756869	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccccggggcccttggcccGcaggccccgcgcctgcagca	14	21	0	0	rs372489374		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	RAB11FIP1	NM_025151	exon1	c.C91T	p.R31W	TGGCCCGCAGGCC		31	4	0.13	43	0	0		105		0	0					A	37756869	G	A	37756869	3	1	146	1	0	0	0	0	1	0	0	0	12944	1086	38	1	3784	1	RAB11FIP1	8	37756869	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	5139094	37756869	108607153	41	10454											
HOOK3	84376	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	42798490	42798490	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aattaatgactttacccttcCtgatgtgaaccttattgggg	8	8	0	3	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_032410	exon5	c.C302G	p.P101R	CCCTTCCTGATGT		118	11	0.09	79	0	0				3	0	0				G	42798490	C	G	42798490	3	3	146	1	0	0	0	0	1	0	0	0	7324	681	24	5	320	5	HOOK3	8	42798490	Missense_Mutation	SNP	C	TCGA-ZM-AA0H-01A-11D-A435-10	5041621	42798490	103565532	42	10455											
ASCC1	51008	broad.mit.edu	37	chr10	73956741	73956741	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caccatttcgatgctggccaGtgattactgtaaacaaagaa	8	9	0	2	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	ASCC1	NM_001198799	exon6	c.C401A	p.T134N	TGGCCAGTGATTA		61	4	0.07	96	1	0.0104166667		18		9	0	0				T	73956741	G	T	73956741	3	4	146	1	0	0	0	0	1	0	0	0	1030	1029	36	3	780	3	ASCC1	10	73956741	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10		73956741	61578006	43	10456											
GRK5	2869	mdanderson.org	37	chr10	121086116	121086116	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cagtgtgaagacctccgaagGaccataggtaagctgtcctg	12	10	0	2	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_005308	exon2	c.G141T	p.R47S	CCGAAGGACCATA		44	3	0.07	45	0	0				0	0					T	121086116	G	T	121086116	3	4	146	1	0	0	0	0	1	0	0	0	6832	1165	41	3	147	3	GRK5	10	121086116	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	47129375	121086116	14448631	44	10457											
RNASEH2C	84153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	65487762	65487762	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtcgtcagtcccggaatccCgcaaggggtctggcttcccc	13	15	2	0	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_032193	exon2	c.G299T	p.R100L	GAATCCCGCAAGG		53	9	0.17	67	0	0				181	33	0.18				A	65487762	C	A	65487762	3	1	146	1	0	0	0	0	1	0	0	0	13465	652	23	1	207	1	RNASEH2C	11	65487762	Missense_Mutation	SNP	C	TCGA-ZM-AA0H-01A-11D-A435-10		65487762	69518754	45	10458											
ARHGAP32	9743	mdanderson.org	37	chr11	128844779	128844779	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttcctcctcactctcattGtcatgaggcagattatcata	5	13	4	2	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001142685	exon20	c.C2271A	p.D757E	CTCATTGTCATGA		45	3	0.07	73	0	0				0	0					T	128844779	G	T	128844779	3	4	146	1	0	0	0	0	1	0	0	0	878	1368	48	3	4004	3	ARHGAP32	11	128844779	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	63357017	128844779	6161737	46	10459											
KIF5A	3798	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	57965876	57965876	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acccgaggagacaacgagaaGgtccagcgggagctgagcca	15	11	0	3	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	KIF5A	NM_004984	exon14	c.G1395A	p.K465K	CGAGAAGGTCCAG		60	5	0.08	61	0	0		143		1	0	0				A	57965876	G	A	57965876	2	1	146	1	0	0	0	0	0	0	0	1	8346	991	35	3		3	KIF5A	12	57965876	Silent	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10		57965876	75886019	47	10460											
PPM1H	57460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	63225974	63225974	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gttcctgtttggggttgaggTcacggcccctgccttcttct	12	12	3	1	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_020700	exon2	c.A331T	p.T111S	TTGAGGTCACGGC		131	22	0.17	92	0	0				0	0					A	63225974	T	A	63225974	3	1	146	1	0	0	0	0	1	0	0	0	12389	1667	58	5	1249	5	PPM1H	12	63225974	Missense_Mutation	SNP	T	TCGA-ZM-AA0H-01A-11D-A435-10	5260098	63225974	70625921	48	10461											
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	78591111	78591111	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tcccagttgtaataattcttGataatcttcatcatgtgggc	7	8	4	1	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_014903	exon34	c.G6310C	p.D2104H	ATTCTTGATAATC		76	11	0.14	50	0	0				0	0					C	78591111	G	C	78591111	3	2	146	1	0	0	0	0	1	0	0	0	10232	1290	45	5	6444	5	NAV3	12	78591111	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	15365137	78591111	55260784	49	10462											
HSPH1	10808	mdanderson.org	37	chr13	31727058	31727058	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagcatctaacacagatcGcctctcagcatctgtaaaga	7	12	3	2	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	HSPH1,NS,carcinoma,0,1	HSPH1	NM_006644	exon5	c.C460A	p.R154R	CAGATCGCCTCTC		50	3	0.06	47	0	0		0	1	5	0	0				T	31727058	G	T	31727058	2	4	146	1	0	0	0	0	0	0	0	1	7474	1095	38	1		1	HSPH1	13	31727058	Silent	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10		31727058	83442820	50	10463											
ABHD12B	145447	mdanderson.org	37	chr14	51371075	51371075	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agagatttcctgagcaagcaGtggtcatgagtctgggagga	15	6	2	3	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001206673	exon13	c.G1080T	p.Q360H	CAAGCAGTGGTCA		43	3	0.07	53	0	0				31	0	0				T	51371075	G	T	51371075	3	4	146	1	0	0	0	0	1	0	0	0	77	1020	36	3	909	3	ABHD12B	14	51371075	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10		51371075	55978465	51	10464											
ACOT6	641372	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr14	74086215	74086215	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtcttgttccattggaaaAggcgcaggtgcccttcttgt	11	9	2	0	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	ACOT6	NM_001037162	exon2	c.A296G	p.K99R	TGGAAAAGGCGCA		86	5	0.06	102	0	0		12		0	0					G	74086215	A	G	74086215	3	3	146	1	0	0	0	0	1	0	0	0	154	72	3	4	302	4	ACOT6	14	74086215	Missense_Mutation	SNP	A	TCGA-ZM-AA0H-01A-11D-A435-10	22715140	74086215	33263325	52	10465											
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	96761397	96761397	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaattggcactatcattttGggaaggctgttttggcccag	12	7	1	1	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_018036	exon36	c.C5326G	p.Q1776E	CATTTTGGGAAGG		152	19	0.13	150	0	0				4	1	0.25				C	96761397	G	C	96761397	3	2	146	1	0	0	0	0	1	0	0	0	1093	1357	47	5	938	5	ATG2B	14	96761397	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	22675182	96761397	10588143	53	10466											
FAM98B	283742	broad.mit.edu	37	chr15	38762579	38762579	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaacaacttctgacattccGcatatgctaaaccaagtgga	6	11	2	1	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	FAM98B	NM_001042429	exon4	c.G504A	p.P168P	CATTCCGCATATG		443	6	0.01	371	0	0		53		9	0	0				A	38762579	G	A	38762579	2	1	146	1	0	0	0	0	0	0	0	1	5689	1074	38	1		1	FAM98B	15	38762579	Silent	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10		38762579	63768813	54	10467											
INO80	54617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	41308347	41308347	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaccctatgcccttgagacTtgagccgagtcagcaggaca	12	12	1	2	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_017553	exon27	c.A3341C	p.K1114T	TGAGACTTGAGCC		58	8	0.14	66	0	0				8	2	0.25				G	41308347	T	G	41308347	3	3	146	1	0	0	0	0	1	0	0	0	7789	1609	56	4	1369	4	INO80	15	41308347	Missense_Mutation	SNP	T	TCGA-ZM-AA0H-01A-11D-A435-10	2545768	41308347	61223045	55	10468											
SLC9A3R2	9351	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	2086857	2086857	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cacttcaagcggcttcgggtCacacccaccgaggagcacgt	11	15	2	0	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_004785	exon4	c.C723G	p.V241V	TCGGGTCACACCC		96	7	0.07	84	0	0				40	3	0.08				G	2086857	C	G	2086857	2	3	146	1	0	0	0	0	0	0	0	1	14769	813	29	5		5	SLC9A3R2	16	2086857	Silent	SNP	C	TCGA-ZM-AA0H-01A-11D-A435-10		2086857	88267896	56	10469											
RNPS1	10921	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2312409	2312409	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attttaattttcccataggtGgaaaatatctccatgatgtg	7	6	1	1	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	RNPS1	NM_006711	exon6	c.C546A	p.S182S	ATAGGTGGAAAAT		64	14	0.22	58	1	0.0172413793		18		46	15	0.33				T	2312409	G	T	2312409	2	4	146	1	0	0	0	0	0	0	0	1	13562	1335	47	3		3	RNPS1	16	2312409	Silent	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	225552	2312409	88042344	57	10470											
RNPS1	10921	mdanderson.org	37	chr16	2312754	2312754	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcacctttgtcacattcCgggtgagtctcccaatgtgc	8	14	3	1	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_006711	exon5	c.G509A	p.R170Q	ACATTCCGGGTGA		36	3	0.08	53	0	0				53	0	0				T	2312754	C	T	2312754	3	4	146	1	0	0	0	0	1	0	0	0	13562	652	23	1	424	1	RNPS1	16	2312754	Missense_Mutation	SNP	C	TCGA-ZM-AA0H-01A-11D-A435-10	345	2312754	88041999	58	10471											
CCNF	899	mdanderson.org	37	chr16	2487271	2487271	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggtcggtgagcggaagctGctgcaaggccgtggttcacg	18	9	1	1	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001761	exon5	c.G488T	p.C163F	GAAGCTGCTGCAA		28	3	0.11	16	0	0				1	0	0				T	2487271	G	T	2487271	3	4	146	1	0	0	0	0	1	0	0	0	2944	1319	46	2	506	2	CCNF	16	2487271	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	174517	2487271	87867482	59	10472											
GTF3C1	2975	mdanderson.org	37	chr16	27544702	27544702	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatgaggatgtcgtatttGctcctcctgcaagaaacacc	8	12	0	2	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001520	exon5	c.C759A	p.S253R	GTATTTGCTCCTC		48	3	0.06	51	0	0				2	0	0				T	27544702	G	T	27544702	3	4	146	1	0	0	0	0	1	0	0	0	6912	1310	46	2	5702	2	GTF3C1	16	27544702	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	25057431	27544702	62810051	60	10473											
RNF40	9810	broad.mit.edu	37	chr16	30783266	30783266	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagccgggctgctcgtgagaAagagagcttcaacctcaaga	13	10	2	3	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	RNF40	NM_014771	exon18	c.A2699G	p.K900R	GTGAGAAAGAGAG		134	5	0.04	132	0	0		83		31	0	0				G	30783266	A	G	30783266	3	3	146	1	0	0	0	0	1	0	0	0	13544	14	1	4	2765	4	RNF40	16	30783266	Missense_Mutation	SNP	A	TCGA-ZM-AA0H-01A-11D-A435-10	3238564	30783266	59571487	61	10474											
ZNF276	92822	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	89789843	89789843	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cacgactacaccatggatacCagctccagctgcaaggcctt	8	15	0	0	rs200666334	alternate_allele	TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	ZNF276	NM_001113525	exon4	c.C732G	p.T244T	GGATACCAGCTCC		133	11	0.08	114	1	0.0087719298		70		15	2	0.13				G	89789843	C	G	89789843	3	3	146	1	0	0	0	0	1	0	0	0	17868	581	21	5	746	5	ZNF276	16	89789843	Missense_Mutation	SNP	C	TCGA-ZM-AA0H-01A-11D-A435-10	59006577	89789843	564910	62	10475											
MLLT6	0	broad.mit.edu	37	chr17	36861701	36861703	+	RNA	DEL	GAG	GAG	-													ggcggccagacagagcgagcGaggaggaggaggaggaggac					novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	GAG	GAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	MLLT6	.	.	.	.	GCGAGCGAGGAGG		6	2	0.33	5	0	0		80		0	0					-	36861703	GAG	-	36861701	6	5	146	0	1	1	0	1	0	0	0	0	9677	1073	37	0		0	MLLT6	17	36861701	RNA	DEL	GAG	TCGA-ZM-AA0H-01A-11D-A435-10		36861701	44333509	63	10476											
SKAP1	8631	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	46507464	46507464	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagccaacggatctcctcagGgagggcggcggcctgcattt	15	12	2	0	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	SKAP1	NM_003726	exon1	c.C19T	p.P7S	CCTCAGGGAGGGC		67	6	0.09	76	0	0		41		0	0					A	46507464	G	A	46507464	3	1	146	1	0	0	0	0	1	0	0	0	14409	1232	43	3	1108	3	SKAP1	17	46507464	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	9645763	46507464	34687746	64	10477											
CASKIN2	57513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	73509845	73509845	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	tctgcacaccggtcacatctCcattcttgacggcgaggatc	9	14	4	1	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_020753	exon2	c.C41C	p.S14S	ACATCTCCATTCT		82	14	0.17	65	0	0				0	0					G	73509845	C	G	73509845	2	3	146	1	0	0	0	0	0	0	0	1	2685	855	30	5		5	CASKIN2	17	73509845	Silent	SNP	C	TCGA-ZM-AA0H-01A-11D-A435-10	27002381	73509845	7685365	65	10478											
NPC1	4864	broad.mit.edu;bcgsc.ca	37	chr18	21119403	21119403	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagtcgaaataatcgtcgaTccaggacgagggggcgaagc	14	10	0	0	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	NPC1	NM_000271	exon19	c.A2827G	p.I943V	CGTCGATCCAGGA		95	6	0.06	115	1	0.0086956522		114		17	0	0				C	21119403	T	C	21119403	3	2	146	1	0	0	0	0	1	0	0	0	10616	1435	50	4	1037	4	NPC1	18	21119403	Missense_Mutation	SNP	T	TCGA-ZM-AA0H-01A-11D-A435-10		21119403	56957845	66	10479											
SLC39A6	25800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	33696734	33696734	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tcatcatcattttcaggtttCttctgattctaaaatagtga	5	7	7	2	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_012319	exon6	c.G1368A	p.K456K	AGGTTTCTTCTGA		73	13	0.18	50	0	0				1	0	0				T	33696734	C	T	33696734	2	4	146	1	0	0	0	0	0	0	0	1	14676	912	32	3		3	SLC39A6	18	33696734	Silent	SNP	C	TCGA-ZM-AA0H-01A-11D-A435-10	12577331	33696734	44380514	67	10480											
VPS4B	9525	broad.mit.edu	37	chr18	61067303	61067303	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcatttgcactaggaactcCgtcttaattctacgtgcggc	9	11	2	0	rs146071226		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	VPS4B	NM_004869	exon7	c.G768A	p.T256T	GAACTCCGTCTTA		146	3	0.02	147	0	0		33		1	0	0				T	61067303	C	T	61067303	2	4	146	1	0	0	0	0	0	0	0	1	17272	639	23	1		1	VPS4B	18	61067303	Silent	SNP	C	TCGA-ZM-AA0H-01A-11D-A435-10	27370569	61067303	17009945	68	10481											
CD226	10666	mdanderson.org	37	chr18	67563188	67563188	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacctcactgcctgcacaGgccacgtcatctgaggctga	9	17	3	2	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_006566	exon4	c.C476A	p.P159H	TGCACAGGCCACG		50	3	0.06	49	0	0				2	0	0				T	67563188	G	T	67563188	3	4	146	1	0	0	0	0	1	0	0	0	3008	1000	35	3	550	3	CD226	18	67563188	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	6495885	67563188	10514060	69	10482											
MCOLN1	57192	mdanderson.org	37	chr19	7594053	7594053	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctgctggtgtgggtgggcGtgatccgctacctgaccttc	15	12	0	2	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_020533	exon10	c.G1201A	p.V401M	GTGGGCGTGATCC		46	3	0.07	49	0	0				33	0	0				A	7594053	G	A	7594053	3	1	146	1	0	0	0	0	1	0	0	0	9444	1145	40	1	1239	1	MCOLN1	19	7594053	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10		7594053	51534930	70	10483											
MUC16	94025	mdanderson.org	37	chr19	9057408	9057408	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agctagttttttccacaaagAgagagctcttccatgatgga	9	8	1	3	rs1423051	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_024690	exon3	c.T30038A	p.L10013H	ACAAAGAGAGAGC		66	3	0.05	63	0	0				0	0					T	9057408	A	T	9057408	3	4	146	1	0	0	0	0	1	0	0	0	10020	304	11	5	13813	5	MUC16	19	9057408	Missense_Mutation	SNP	A	TCGA-ZM-AA0H-01A-11D-A435-10	1463355	9057408	50071575	71	10484											
CCDC151	115948	broad.mit.edu;mdanderson.org	37	chr19	11534699	11534699	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	agcaggtgctcgcggtgggtCtgctcgtgggttgaggtcag	19	8	2	1	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	CCDC151	NM_145045	exon9	c.964-1G>C	.	GTGGGTCTGCTCG		27	3	0.11	22	0	0		44		0	0					G	11534699	C	G	11534699	5	3	146	1	0	0	0	0	0	0	1	0	2804	927	32	5	848	5	CCDC151	19	11534699	Splice_Site	SNP	C	TCGA-ZM-AA0H-01A-11D-A435-10	2477291	11534699	47594284	72	10485											
NFIX	4784	mdanderson.org	37	chr19	13192670	13192670	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggccaggccaccggacagGtgagtccagagggccccagg	17	14	0	2	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_002501	exon8	c.1254+1G>T	.	GGACAGGTGAGTC		43	3	0.07	39	0	0				0	0					T	13192670	G	T	13192670	5	4	146	1	0	0	0	0	0	0	1	0	10420	1275	44	3	1285	3	NFIX	19	13192670	Splice_Site	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	1657971	13192670	45936313	73	10486											
SPINT2	10653	bcgsc.ca	37	chr19	38779803	38779807	+	Frame_Shift_Del	DEL	CCACT	CCACT	-													agaaggcaggattctgaagaCcactccagcgatatgttcaa					novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	CCACT	CCACT					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	SPINT2	NM_021102	exon4	c.363_367del	p.121_123del	TGAAGACCACTCC		59	5	0.08	76	0	0		17		135	0	0				-	38779807	CCACT	-	38779803	7	5	146	1	0	1	0	1	0	0	0	0	15124	506	18	0	377	0	SPINT2	19	38779803	Frame_Shift_Del	DEL	CCACT	TCGA-ZM-AA0H-01A-11D-A435-10	25587133	38779803	20349180	74	10487											
GMFG	9535	mdanderson.org	37	chr19	39819174	39819174	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagtgaggtcatcagtggtGcggatttcgaacacctgggc	14	9	3	1	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_004877	exon7	c.C372A	p.R124R	AGTGGTGCGGATT		43	3	0.07	43	0	0				491	0	0				T	39819174	G	T	39819174	2	4	146	1	0	0	0	0	0	0	0	1	6531	1306	46	2		2	GMFG	19	39819174	Silent	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	1039371	39819174	19309809	75	10488											
LTBP4	8425	mdanderson.org	37	chr19	41128450	41128450	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagtgctactttgacacagCggccccggatgcatgtgaca	13	11	0	2	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	.	.	.	.	ACACAGCGGCCCC		47	3	0.06	56	0	0				41	0	0				T	41128450	C	T	41128450	3	4	146	1	0	0	0	0	1	0	0	0	9120	768	27	1	3957	1	LTBP4	19	41128450	Missense_Mutation	SNP	C	TCGA-ZM-AA0H-01A-11D-A435-10	1309276	41128450	18000533	76	10489											
POU2F2	5452	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	42599534	42599534	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tccttctggcgccggttgcaGaaccagacgcggatcacttc	11	14	2	2	rs369799078		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	POU2F2	NM_001207025	exon11	c.C1035T	p.F345F	GTTGCAGAACCAG		44	7	0.16	26	0	0		106		3	0	0				A	42599534	G	A	42599534	2	1	146	1	0	0	0	0	0	0	0	1	12317	933	33	3		3	POU2F2	19	42599534	Silent	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	1471084	42599534	16529449	77	10490											
ZNF283	284349	mdanderson.org	37	chr19	44352551	44352551	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atactaatgagaagtcttatGaatgtaaagactgtgggaag	11	3	1	3	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_181845	exon7	c.G1798T	p.E600X	TCTTATGAATGTA		81	5	0.06	70	0	0				6	0	0				T	44352551	G	T	44352551	4	4	146	1	0	0	0	0	0	1	0	0	17877	1291	45	3	1812	3	ZNF283	19	44352551	Nonsense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	1753017	44352551	14776432	78	10491											
CDC25B	994	mdanderson.org	37	chr20	3785522	3785522	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	accacgaggccttcaaggatGagctaaagaccttccgcctc	9	14	1	2	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_021873	exon16	c.G1657T	p.E553X	AAGGATGAGCTAA		41	3	0.07	33	0	0				50	0	0				T	3785522	G	T	3785522	4	4	146	1	0	0	0	0	0	1	0	0	3085	1291	45	3	1719	3	CDC25B	20	3785522	Nonsense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10		3785522	59239998	79	10492											
GART	2618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	34889725	34889725	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tactggagggaagattttgcCacgattttcctcacaaggct	10	9	1	1	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001136005	exon15	c.G1893A	p.V631V	TTTTGCCACGATT		65	5	0.08	73	0	0				26	4	0.15				T	34889725	C	T	34889725	2	4	146	1	0	0	0	0	0	0	0	1	6282	581	21	3		3	GART	21	34889725	Silent	SNP	C	TCGA-ZM-AA0H-01A-11D-A435-10		34889725	13240170	80	10493											
TTC3	7267	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr21	38468893	38468893	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttttaagacctgaaaactaCcttctttatggtaaccgagc	6	9	1	2	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_001001894	exon10	c.C795T	p.Y265Y	AAACTACCTTCTT		168	16	0.1	108	0	0				17	2	0.12				T	38468893	C	T	38468893	2	4	146	1	0	0	0	0	0	0	0	1	16758	518	18	3		3	TTC3	21	38468893	Silent	SNP	C	TCGA-ZM-AA0H-01A-11D-A435-10	3579168	38468893	9661002	81	10494											
MYO18B	84700	mdanderson.org	37	chr22	26173563	26173563	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgcaggtgcccaagggccGccgggatggcctgcctgccc	15	17	0	0	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_032608	exon8	c.G1883A	p.R628H	AGGGCCGCCGGGA		36	3	0.08	42	0	0				0	0					A	26173563	G	A	26173563	3	1	146	1	0	0	0	0	1	0	0	0	10113	1087	38	1	1909	1	MYO18B	22	26173563	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10		26173563	25131003	82	10495											
LMF2	91289	mdanderson.org	37	chr22	50944795	50944795	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcggaacagcagccatcGcaccagccagaaggggaggt	16	11	0	1	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_033200	exon4	c.C514A	p.R172R	GCCATCGCACCAG		27	3	0.11	15	0	0				18	0	0				T	50944795	G	T	50944795	2	4	146	1	0	0	0	0	0	0	0	1	8886	1095	38	1		1	LMF2	22	50944795	Silent	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10	24771232	50944795	359771	83	10496											
ABCD1	215	mdanderson.org	37	chrX	153008788	153008788	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgctctccatcacccaccGgccctccctgtggtaggtgc	9	19	2	0	novel		TCGA-ZM-AA0H-01A-11D-A435-10	TCGA-ZM-AA0H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17	279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb	.	.	NM_000033	exon9	c.G1979A	p.R660Q	CCCACCGGCCCTC		36	3	0.08	28	0	0				43	0	0				A	153008788	G	A	153008788	3	1	146	1	0	0	0	0	1	0	0	0	60	1116	39	1	2013	1	ABCD1	23	153008788	Missense_Mutation	SNP	G	TCGA-ZM-AA0H-01A-11D-A435-10		153008788	2261772	84	10497											
EPS8L3	79574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	110300454	110300454	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	aagctgtgcttgatcttctgGaagcagtcaatgtactgtgc	11	8	3	1	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_139053	exon10	c.C867A	p.F289L	CTTCTGGAAGCAG		164	27	0.16	124	0	0				0	0					T	110300454	G	T	110300454	3	4	147	1	0	0	0	0	1	0	0	0	5225	1165	41	3	957	3	EPS8L3	1	110300454	Missense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10		110300454	138950167	1	10498											
PRG4	10216	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	186276725	186276725	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caccacccccaagaagctcaCgcccaccacccccgagaagc	6	22	1	2	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	PRG4	NM_005807	exon7	c.C1874T	p.T625M	AGCTCACGCCCAC		58	7	0.12	40	0	0		259		0	0					T	186276725	C	T	186276725	3	4	147	1	0	0	0	0	1	0	0	0	12532	536	19	1	1896	1	PRG4	1	186276725	Missense_Mutation	SNP	C	TCGA-ZM-AA0N-01A-21D-A435-10	75976271	186276725	62973896	2	10499											
VWA3B	200403	mdanderson.org	37	chr2	98810929	98810929	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaagataatttggaacagGctcagtcctggattagagac	11	6	1	3	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_144992	exon12	c.G1711T	p.A571S	GAACAGGCTCAGT		47	3	0.06	72	0	0				0	0					T	98810929	G	T	98810929	3	4	147	1	0	0	0	0	1	0	0	0	17300	1203	42	2	1753	2	VWA3B	2	98810929	Missense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10		98810929	144388444	3	10500											
IL18RAP	8807	broad.mit.edu	37	chr2	103067331	103067331	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggattttgatgctttcGtatcctatgcaaaatggagc	9	6	0	1	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	IL18RAP	NM_003853	exon11	c.G1234A	p.V412I	GCTTTCGTATCCT		72	3	0.04	69	0	0		102		4	0	0				A	103067331	G	A	103067331	3	1	147	1	0	0	0	0	1	0	0	0	7691	1145	40	1	1268	1	IL18RAP	2	103067331	Missense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10	4256402	103067331	140132042	4	10501											
SPAG16	79582	mdanderson.org	37	chr2	214149325	214149325	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggacgcggtggcggctgagGgcgcctactacctggaacgt	17	12	0	1	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_024532	exon1	c.G118A	p.G40S	GCTGAGGGCGCCT		41	3	0.07	42	0	0				1	0	0				A	214149325	G	A	214149325	3	1	147	1	0	0	0	0	1	0	0	0	15033	1232	43	3	120	3	SPAG16	2	214149325	Missense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10	111081994	214149325	29050048	5	10502											
GPC1	2817	mdanderson.org	37	chr2	241404986	241404986	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccggacatgaccatccggcaGcagatcatgcagctgaagat	11	12	1	4	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_002081	exon8	c.G1365T	p.Q455H	CCGGCAGCAGATC		73	4	0.05	81	0	0				41	0	0				T	241404986	G	T	241404986	3	4	147	1	0	0	0	0	1	0	0	0	6636	962	34	2	1395	2	GPC1	2	241404986	Missense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10	27255661	241404986	1794387	6	10503											
CLASP2	23122	mdanderson.org	37	chr3	33543150	33543150	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcactacttactttactGccagtaagttgactgagatg	9	9	0	2	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_015097	exon38	c.C4455A	p.G1485G	TTTACTGCCAGTA		35	3	0.09	57	0	0				16	0	0				T	33543150	G	T	33543150	2	4	147	1	0	0	0	0	0	0	0	1	3478	1306	46	2		2	CLASP2	3	33543150	Silent	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10		33543150	164479280	7	10504											
USP19	10869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	49146542	49146542	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcccacccagtcttggggcCcccagggacccaggggccca	14	18	1	0	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_001199160	exon27	c.G4109A	p.G1370E	TGGGGCCCCCAGG		142	22	0.15	187	0	0				4	3	0.75				T	49146542	C	T	49146542	3	4	147	1	0	0	0	0	1	0	0	0	17109	623	22	3	154	3	USP19	3	49146542	Missense_Mutation	SNP	C	TCGA-ZM-AA0N-01A-21D-A435-10	15603392	49146542	148875888	8	10505											
ARHGEF3	50650	mdanderson.org	37	chr3	56789110	56789110	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgtttcgtgctcgagggggCggcatttctggaccagggtc	16	11	1	0	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	ARHGEF3_ENST00000338458,colon,carcinoma,0,3	ARHGEF3_ENST00000338458	NM_001128615	exon6	c.G370A	p.A124T	AGGGGGCGGCATT		34	4	0.12	35	0	0		0	3	0	0					T	56789110	C	T	56789110	3	4	147	1	0	0	0	0	1	0	0	0	901	768	27	1	1338	1	ARHGEF3	3	56789110	Missense_Mutation	SNP	C	TCGA-ZM-AA0N-01A-21D-A435-10	7642568	56789110	141233320	9	10506											
GABRG2	2566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	161528257	161528257	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaggttgacaattgatgctGagtgccaattacaattgcac	9	7	0	3	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_198904	exon5	c.G565A	p.E189K	GATGCTGAGTGCC		52	8	0.15	74	0	0				0	0					A	161528257	G	A	161528257	3	1	147	1	0	0	0	0	1	0	0	0	6206	1291	45	3	583	3	GABRG2	5	161528257	Missense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10		161528257	19387003	10	10507											
FAM83B	222584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	54806767	54806767	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agaacaagtttcgaggatttAtgcaaaagtttggaaacttt	9	4	0	1	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_001010872	exon5	c.A2998G	p.M1000V	GGATTTATGCAAA		137	21	0.15	127	0	0				0	0					G	54806767	A	G	54806767	3	3	147	1	0	0	0	0	1	0	0	0	5665	449	16	4	3012	4	FAM83B	6	54806767	Missense_Mutation	SNP	A	TCGA-ZM-AA0N-01A-21D-A435-10		54806767	116308300	11	10508											
BEND3	57673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	107389963	107389963	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcattttttcctgttggggCggcggcacctctcatcgatg	12	12	1	0	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_001080450	exon5	c.G2432A	p.R811H	TTGGGGCGGCGGC		73	13	0.18	69	0	0				74	21	0.28				T	107389963	C	T	107389963	3	4	147	1	0	0	0	0	1	0	0	0	1397	768	27	1	58	1	BEND3	6	107389963	Missense_Mutation	SNP	C	TCGA-ZM-AA0N-01A-21D-A435-10	52583196	107389963	63725104	12	10509											
IQCE	23288	bcgsc.ca	37	chr7	2627479	2627479	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtggagtggagcaagcccCggctgctgaggcgcattgtg	17	9	0	1	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	IQCE	NM_152558	exon13	c.C1012T	p.R338W	AAGCCCCGGCTGC		72	4	0.06	54	0	0		66		3	0	0				T	2627479	C	T	2627479	3	4	147	1	0	0	0	0	1	0	0	0	7849	643	23	1	1062	1	IQCE	7	2627479	Missense_Mutation	SNP	C	TCGA-ZM-AA0N-01A-21D-A435-10		2627479	156511184	13	10510											
ADAM22	53616	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	87780609	87780609	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aagatgcaaaaccagagataGacaatgcaaatacatttggg	9	6	0	3	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_021722	exon20	c.G1655C	p.R552T	GAGATAGACAATG		110	7	0.06	110	0	0				0	0					C	87780609	G	C	87780609	3	2	147	1	0	0	0	0	1	0	0	0	243	942	33	5	1733	5	ADAM22	7	87780609	Missense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10	85153130	87780609	71358054	14	10511											
SLC18A1	6570	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	20005148	20005148	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	atgcaaaaagccacatcagcGatggcgtagacactcccata	8	12	1	1	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_003053	exon14	c.C1296T	p.I432I	ATCAGCGATGGCG		172	12	0.07	133	0	0				0	0					A	20005148	G	A	20005148	2	1	147	1	0	0	0	0	0	0	0	1	14479	1048	37	1		1	SLC18A1	8	20005148	Silent	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10		20005148	126358874	15	10512											
GDAP1	54332	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	75272458	75272458	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agctgcttgactccttgccaAtggatgcctatacacatggc	9	12	0	1	rs368695731	alternate_allele	TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_018972	exon3	c.A397T	p.M133L	TTGCCAATGGATG		79	8	0.1	86	0	0				0	0					T	75272458	A	T	75272458	3	4	147	1	0	0	0	0	1	0	0	0	6347	101	4	5	407	5	GDAP1	8	75272458	Missense_Mutation	SNP	A	TCGA-ZM-AA0N-01A-21D-A435-10	55267310	75272458	71091564	16	10513											
ANXA11	311	mdanderson.org	37	chr10	81921708	81921708	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacctgctaccaggtgggccCggctccgggagcacagaacc	13	15	0	1	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_145868	exon12	c.G1163A	p.R388Q	TGGGCCCGGCTCC		23	3	0.13	27	0	0				37	1	0.03				T	81921708	C	T	81921708	3	4	147	1	0	0	0	0	1	0	0	0	710	652	23	1	374	1	ANXA11	10	81921708	Missense_Mutation	SNP	C	TCGA-ZM-AA0N-01A-21D-A435-10		81921708	53613039	17	10514											
MAT1A	4143	mdanderson.org	37	chr10	82036264	82036264	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcatctcctccagcgtgatGtcttcgttgtgctgcacaga	10	13	2	2	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	MAT1A,NS,carcinoma,0,1	MAT1A	NM_000429	exon6	c.C636A	p.D212E	CGTGATGTCTTCG		40	3	0.08	50	0	0		0	1	0	0					T	82036264	G	T	82036264	3	4	147	1	0	0	0	0	1	0	0	0	9378	1368	48	3	567	3	MAT1A	10	82036264	Missense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10	114556	82036264	53498483	18	10515											
KNDC1	85442	mdanderson.org	37	chr10	135012548	135012548	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccgggccaggagccagagGgccccggggccacccctgcc	16	19	0	1	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_152643	exon14	c.G2536T	p.G846C	CCAGAGGGCCCCG		33	3	0.09	20	0	0				0	0					T	135012548	G	T	135012548	3	4	147	1	0	0	0	0	1	0	0	0	8468	1232	43	3	2590	3	KNDC1	10	135012548	Missense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10	52976284	135012548	522199	19	10516											
NRXN2	9379	mdanderson.org	37	chr11	64374979	64374979	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgtggggttggctgtggGcagatgggggaagccggggg	23	7	0	1	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_015080	exon23	c.C4828T	p.P1610S	CTGTGGGCAGATG		16	3	0.19	22	0	0				23	0	0				A	64374979	G	A	64374979	3	1	147	1	0	0	0	0	1	0	0	0	10713	1203	42	2	314	2	NRXN2	11	64374979	Missense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10		64374979	70631537	20	10517											
ARL2	402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	64786160	64786160	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacagcgcagaccgccagcgCatgcaggactgccagcggga	15	14	0	1	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	ARL2,NS,carcinoma,+1,1	ARL2	NM_001667	exon3	c.C294T	p.R98R	CCAGCGCATGCAG		43	7	0.16	53	0	0		1	1	89	38	0.43				T	64786160	C	T	64786160	2	4	147	1	0	0	0	0	0	0	0	1	932	697	25	2		2	ARL2	11	64786160	Silent	SNP	C	TCGA-ZM-AA0N-01A-21D-A435-10	411181	64786160	70220356	21	10518											
CHRDL2	25884	ucsc.edu	37	chr11	74424504	74424504	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acaggcggacagtggaggcgGtaacaactcacatgggcgcc	15	11	1	0	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	CHRDL2	NM_015424	exon3	c.C216A	p.Y72X	GAGGCGGTAACAA		38	4	0.11	61	0	0		47		0	0					T	74424504	G	T	74424504	4	4	147	1	0	0	0	0	0	1	0	0	3396	1256	44	3	1179	3	CHRDL2	11	74424504	Nonsense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10	9638344	74424504	60582012	22	10519											
ACER3	55331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	76726118	76726118	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggtatatttttattgggaTttttattttggaatatagat	9	0	0	1	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_018367	exon8	c.T556C	p.F186L	TTGGGATTTTTAT		38	7	0.18	51	0	0				1	0	0				C	76726118	T	C	76726118	3	2	147	1	0	0	0	0	1	0	0	0	140	1493	52	4	586	4	ACER3	11	76726118	Missense_Mutation	SNP	T	TCGA-ZM-AA0N-01A-21D-A435-10	2301614	76726118	58280398	23	10520											
GRM5	2915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	88338026	88338026	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agtcctgcatagcctgggcaGagggacatctgcatgttgtg	14	9	1	1	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_000842	exon5	c.C1254T	p.L418L	TGGGCAGAGGGAC		110	18	0.16	110	0	0				0	0					A	88338026	G	A	88338026	2	1	147	1	0	0	0	0	0	0	0	1	6840	929	33	3		3	GRM5	11	88338026	Silent	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10	11611908	88338026	46668490	24	10521											
MAML2	84441	broad.mit.edu;mdanderson.org	37	chr11	95825263	95825263	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgttgttgCtgctgctgctgctgttgggc	15	10	0	0	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	MAML2	NM_032427	exon2	c.G1932A	p.Q644Q	TTGTTGCTGCTGC		47	3	0.06	55	1	0.0181818182		94		1	0	0				T	95825263	C	T	95825263	2	4	147	1	0	0	0	0	0	0	0	1	9255	796	28	2		2	MAML2	11	95825263	Silent	SNP	C	TCGA-ZM-AA0N-01A-21D-A435-10	7487237	95825263	39181253	25	10522											
PLXNC1	10154	bcgsc.ca;mdanderson.org	37	chr12	94637739	94637739	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaaaatataaccatgatgGgcagaaattttgatgtaatt	8	4	1	3	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	PLXNC1	NM_005761	exon12	c.G2326T	p.G776C	ATGATGGGCAGAA		98	5	0.05	72	0	0		135		0	0					T	94637739	G	T	94637739	3	4	147	1	0	0	0	0	1	0	0	0	12173	1232	43	3	2372	3	PLXNC1	12	94637739	Missense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10		94637739	39214156	26	10523											
OXA1L	5018	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr14	23239418	23239418	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acagattacaaggcttcctcGgagatggcactttaccagaa	9	10	0	3	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_005015	exon5	c.G780A	p.S260S	TTCCTCGGAGATG		117	9	0.08	98	0	0				41	6	0.15				A	23239418	G	A	23239418	2	1	147	1	0	0	0	0	0	0	0	1	11374	1103	39	1		1	OXA1L	14	23239418	Silent	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10		23239418	84110122	27	10524											
TRMT61A	115708	broad.mit.edu	37	chr14	104001019	104001019	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacaacgtgcgcactgtcaGcctgccaccgcccgacctgg	10	18	1	0	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	TRMT61A	NM_152307	exon4	c.G731T	p.S244I	CTGTCAGCCTGCC		47	6	0.13	40	1	0.025		15		24	0	0				T	104001019	G	T	104001019	3	4	147	1	0	0	0	0	1	0	0	0	16629	971	34	2	741	2	TRMT61A	14	104001019	Missense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10	80761601	104001019	3348521	28	10525											
FBN1	2200	broad.mit.edu	37	chr15	48703418	48703418	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccatcttcatttccagattcGatcaagtatctgttgtgatt	6	9	4	2	rs138574576	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	FBN1	NM_000138	exon66	c.C8385A	p.I2795I	AGATTCGATCAAG		124	5	0.04	111	0	0		310		2	0	0				T	48703418	G	T	48703418	2	4	147	1	0	0	0	0	0	0	0	1	5734	1048	37	1		1	FBN1	15	48703418	Silent	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10		48703418	53827974	29	10526											
WDR90	197335	mdanderson.org	37	chr16	717551	717551	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgctcttcacggccgccCgcaacgagatccttgtgtgg	13	14	2	1	rs370037118		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	WDR90,NS,carcinoma,0,1	WDR90	NM_145294	exon41	c.C5209T	p.R1737C	GCCGCCCGCAACG		30	3	0.1	33	0	0		0	1	144	0	0				T	717551	C	T	717551	3	4	147	1	0	0	0	0	1	0	0	0	17396	652	23	1	5371	1	WDR90	16	717551	Missense_Mutation	SNP	C	TCGA-ZM-AA0N-01A-21D-A435-10		717551	89637202	30	10527											
UNKL	64718	mdanderson.org	37	chr16	1417324	1417324	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacgctccttggcctcctgCgcctctcgctgccaggcatc	10	19	1	0	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_001193388	exon14	c.G1815A	p.A605A	CTCCTGCGCCTCT		20	2	0.1	22	0	0				5	0	0				T	1417324	C	T	1417324	2	4	147	1	0	0	0	0	0	0	0	1	17060	755	27	1		1	UNKL	16	1417324	Silent	SNP	C	TCGA-ZM-AA0N-01A-21D-A435-10	699773	1417324	88937429	31	10528											
KLHL36	79786	mdanderson.org	37	chr16	84690889	84690889	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagctggcctccatctacaGcctcaagcggcttgatgcct	11	14	2	1	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_024731	exon3	c.G476T	p.S159I	TCTACAGCCTCAA		38	3	0.08	61	0	0				1	0	0				T	84690889	G	T	84690889	3	4	147	1	0	0	0	0	1	0	0	0	8431	971	34	2	482	2	KLHL36	16	84690889	Missense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10	83273565	84690889	5663864	32	10529											
TP53	7157	broad.mit.edu	37	chr17	7574024	7574024	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacatctcgaagcgctcacGcccacggatctgcagcaaca	9	15	3	0	rs375444154	alternate_allele	TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	TP53_ENST00000269305,colon,carcinoma,+2,3	TP53	NM_000546	exon10	c.C1003A	p.R335S	GCTCACGCCCACG		102	3	0.03	126	1	0.0079365079		33396	3	0	0					T	7574024	G	T	7574024	3	4	147	1	0	0	0	0	1	0	0	0	16441	1087	38	1	186	1	TP53	17	7574024	Missense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10		7574024	73621186	33	10530											
WNK4	65266	mdanderson.org	37	chr17	40936077	40936077	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcaccgggatctcaagtGcgacaatgtctttatcacgg	10	12	3	0	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_032387	exon3	c.G914T	p.C305F	TCAAGTGCGACAA		36	3	0.08	34	0	0				3	0	0				T	40936077	G	T	40936077	3	4	147	1	0	0	0	0	1	0	0	0	17439	1319	46	2	924	2	WNK4	17	40936077	Missense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10	33362053	40936077	40259133	34	10531											
RGS9	8787	mdanderson.org	37	chr17	63186321	63186321	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaccaacaggccttgatgaGgtccacagtgaagtcttctg	10	10	2	3	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_003835	exon11	c.G713T	p.R238M	TGATGAGGTCCAC		49	3	0.06	42	0	0				0	0					T	63186321	G	T	63186321	3	4	147	1	0	0	0	0	1	0	0	0	13362	1000	35	3	755	3	RGS9	17	63186321	Missense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10	22250244	63186321	18008889	35	10532											
BPTF	2186	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	65890179	65890179	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcaaggcagttcagatgtGtagcaaacccagagaatttg	11	7	2	2	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	BPTF_ENST00000335221,NS,carcinoma,0,2	BPTF	NM_004459	exon9	c.G2819T	p.C940F	AGATGTGTAGCAA		52	5	0.1	65	0	0		415	2	2	0	0				T	65890179	G	T	65890179	3	4	147	1	0	0	0	0	1	0	0	0	1497	1377	48	3	2853	3	BPTF	17	65890179	Missense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10	2703858	65890179	15305031	36	10533											
BAHCC1	57597	mdanderson.org	37	chr17	79422408	79422408	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctatgcgggcctgcagactGcctccgtggtgagtgccgag	15	12	1	2	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	.	.	.	.	CAGACTGCCTCCG		32	3	0.09	29	0	0				0	0					A	79422408	G	A	79422408	3	1	147	1	0	0	0	0	1	0	0	0	1294	1319	46	2	4450	2	BAHCC1	17	79422408	Missense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10	13532229	79422408	1772802	37	10534											
FSCN2	25794	mdanderson.org	37	chr17	79496002	79496002	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgctgagcgtgagccggCggcgctacgtgcacctgtgc	15	14	0	2	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_012418	exon1	c.C445T	p.R149W	AGCCGGCGGCGCT		17	2	0.12	18	0	0				0	0					T	79496002	C	T	79496002	3	4	147	1	0	0	0	0	1	0	0	0	6102	759	27	1	447	1	FSCN2	17	79496002	Missense_Mutation	SNP	C	TCGA-ZM-AA0N-01A-21D-A435-10	73594	79496002	1699208	38	10535											
MKNK2	2872	mdanderson.org	37	chr19	2039711	2039711	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggtggagacagctgcagGcagcgtgaggtagctcggac	19	8	0	2	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_199054	exon14	c.C1299A	p.C433X	CTGCAGGCAGCGT		34	3	0.09	36	0	0				9	0	0				T	2039711	G	T	2039711	4	4	147	1	0	0	0	0	0	1	0	0	9652	1195	42	2	197	2	MKNK2	19	2039711	Nonsense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10		2039711	57089272	39	10536											
NFIC	4782	broad.mit.edu	37	chr19	3453852	3453852	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggctgccacggctggcgcTcccccctgccaccaaacccg	12	20	0	0	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	NFIC	NM_001245002	exon9	c.T1361C	p.L454P	TGGCGCTCCCCCC		116	22	0.19	83	9	0.1084337349		36		0	0					C	3453852	T	C	3453852	3	2	147	1	0	0	0	0	1	0	0	0	10418	1551	54	4	1402	4	NFIC	19	3453852	Missense_Mutation	SNP	T	TCGA-ZM-AA0N-01A-21D-A435-10	1414141	3453852	55675131	40	10537											
HSH2D	84941	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	16263920	16263920	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggactttcatgatccccgggGagaaggtggcccacacctcg	13	13	1	2	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_032855	exon6	c.G283A	p.E95K	CCCGGGGAGAAGG		74	15	0.2	47	0	0				6	0	0				A	16263920	G	A	16263920	3	1	147	1	0	0	0	0	1	0	0	0	7442	1175	41	3	293	3	HSH2D	19	16263920	Missense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10	12810068	16263920	42865063	41	10538											
DHDH	27294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	49442835	49442835	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tccacgttccccgggccgtaGaccgggcccaggctgggggg	17	15	0	1	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_014475	exon4	c.G496C	p.D166H	GCCGTAGACCGGG		87	13	0.15	79	0	0				0	0					C	49442835	G	C	49442835	3	2	147	1	0	0	0	0	1	0	0	0	4507	942	33	5	510	5	DHDH	19	49442835	Missense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10	33178915	49442835	9686148	42	10539											
TTYH1	57348	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	54942000	54942000	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tctttctgcagaggctgactCtgtcccagcgagctctggcc	11	14	4	2	rs199946983	by1000genomes	TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	TTYH1	NM_020659	exon9	c.C949T	p.L317L	CTGACTCTGTCCC		64	5	0.08	69	0	0		78		29	3	0.1				T	54942000	C	T	54942000	3	4	147	1	0	0	0	0	1	0	0	0	16800	912	32	3	983	3	TTYH1	19	54942000	Missense_Mutation	SNP	C	TCGA-ZM-AA0N-01A-21D-A435-10	5499165	54942000	4186983	43	10540											
SIRPG	55423	mdanderson.org	37	chr20	1610930	1610930	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggacagctatgaggagcagCgcagtaagggatgatgccgg	17	7	0	2	rs114055242	bycluster;by1000genomes	TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_018556	exon5	c.G1104A	p.A368A	GAGCAGCGCAGTA		52	3	0.06	49	0	0	0.001			58	0	0				T	1610930	C	T	1610930	2	4	147	1	0	0	0	0	0	0	0	1	14390	755	27	1		1	SIRPG	20	1610930	Silent	SNP	C	TCGA-ZM-AA0N-01A-21D-A435-10		1610930	61414590	44	10541											
BAGE	85319	broad.mit.edu	37	chr21	11058613	11058614	+	RNA	INS	-	-	A													aaacctaaagatttttttttINSaaagcaaatagtaatatggt					rs377480117	bycluster	TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	.	.	.	.	TTTTTTTAAAGCA		9	3	0.33	7	0	0				0	0					A	11058614	-	A	11058613	6	5	147	0	1	1	1	0	0	0	0	0	1289	1769	61	0		0	BAGE	21	11058613	RNA	INS	-	TCGA-ZM-AA0N-01A-21D-A435-10		11058613	37071282	45	10542											
MED15	51586	bcgsc.ca	37	chr22	20918767	20918767	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gctccagcaggtggcgctgcAgcagcagcagcaacagcagc	14	14	0	0	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	MED15	NM_015889	exon6	c.A482T	p.Q161L	CGCTGCAGCAGCA		140	5	0.04	114	0	0		68		49	0	0				T	20918767	A	T	20918767	3	4	147	1	0	0	0	0	1	0	0	0	9482	188	7	5	504	5	MED15	22	20918767	Missense_Mutation	SNP	A	TCGA-ZM-AA0N-01A-21D-A435-10		20918767	30385799	46	10543											
ADORA2A	135	mdanderson.org	37	chr22	24829692	24829692	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaccgctacattgccatccGcatcccgctccggtgagcag	10	16	0	2	rs202185195		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_000675	exon2	c.G320A	p.R107H	CCATCCGCATCCC		27	3	0.11	28	0	0				2	0	0				A	24829692	G	A	24829692	3	1	147	1	0	0	0	0	1	0	0	0	326	1087	38	1	322	1	ADORA2A	22	24829692	Missense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10	3910925	24829692	26474874	47	10544											
EMID1	129080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	29654850	29654850	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctgccggcacaggcaccCccagcctccttcggggcaag	12	19	0	0	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_133455	exon15	c.C1249A	p.P417T	GGCACCCCCAGCC		81	9	0.11	58	0	0				1	0	0				A	29654850	C	A	29654850	3	1	147	1	0	0	0	0	1	0	0	0	5119	623	22	3	1307	3	EMID1	22	29654850	Missense_Mutation	SNP	C	TCGA-ZM-AA0N-01A-21D-A435-10	4825158	29654850	21649716	48	10545											
CELSR1	9620	broad.mit.edu;mdanderson.org	37	chr22	46931534	46931534	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatccaggatcccgctcaGcgagtgcaggtagaactggc	12	13	1	1	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	CELSR1	NM_014246	exon1	c.C1534A	p.L512M	CGCTCAGCGAGTG		52	4	0.08	51	0	0		242		1	0	0				T	46931534	G	T	46931534	3	4	147	1	0	0	0	0	1	0	0	0	3243	962	34	2	7650	2	CELSR1	22	46931534	Missense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10	17276684	46931534	4373032	49	10546											
EIF2S3	1968	mdanderson.org	37	chrX	24078274	24078274	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atgctgaacggtgcagcagtGatggatgcagctcttctgtt	13	8	2	2	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_001415	exon5	c.G453T	p.V151V	AGCAGTGATGGAT		48	4	0.08	58	0	0				4	0	0				T	24078274	G	T	24078274	2	4	147	1	0	0	0	0	0	0	0	1	5037	1277	45	3		3	EIF2S3	23	24078274	Silent	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10		24078274	131192286	50	10547											
BCAP31	10134	mdanderson.org	37	chrX	152981136	152981136	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatacttccgaatttcgcGcacggcatctgtggtggagc	11	11	2	0	novel		TCGA-ZM-AA0N-01A-21D-A435-10	TCGA-ZM-AA0N-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a14779a4-7bb5-4393-bf69-2fb981af9662	d558f583-6c20-4f1d-a431-dda54d4d3f05	.	.	NM_001139457	exon4	c.C403A	p.R135S	TTTCGCGCACGGC		44	3	0.07	47	0	0				74	0	0				T	152981136	G	T	152981136	3	4	147	1	0	0	0	0	1	0	0	0	1345	1087	38	1	558	1	BCAP31	23	152981136	Missense_Mutation	SNP	G	TCGA-ZM-AA0N-01A-21D-A435-10	128902862	152981136	2289424	51	10548											
