Loading MAF file: /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSig_2CV/TGCT-TP/15863019/TGCT-TP.final_analysis_set.maf
Sorting MAF data ...
Processing MAF data ...
Loading chr01: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr01.txt
100 mutations processed.
200 mutations processed.
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400 mutations processed.
500 mutations processed.
600 mutations processed.
700 mutations processed.
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900 mutations processed.
Loading chr02: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr02.txt
1000 mutations processed.
1100 mutations processed.
1200 mutations processed.
1300 mutations processed.
1400 mutations processed.
1500 mutations processed.
Loading chr03: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr03.txt
1600 mutations processed.
1700 mutations processed.
1800 mutations processed.
1900 mutations processed.
2000 mutations processed.
Loading chr04: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr04.txt
2100 mutations processed.
2200 mutations processed.
2300 mutations processed.
2400 mutations processed.
Loading chr05: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr05.txt
2500 mutations processed.
2600 mutations processed.
2700 mutations processed.
2800 mutations processed.
Loading chr06: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr06.txt
2900 mutations processed.
3000 mutations processed.
3100 mutations processed.
3200 mutations processed.
3300 mutations processed.
Loading chr07: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr07.txt
3400 mutations processed.
3500 mutations processed.
3600 mutations processed.
3700 mutations processed.
3800 mutations processed.
Loading chr08: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr08.txt
3900 mutations processed.
4000 mutations processed.
4100 mutations processed.
Loading chr09: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr09.txt
4200 mutations processed.
4300 mutations processed.
4400 mutations processed.
4500 mutations processed.
Loading chr10: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr10.txt
4600 mutations processed.
4700 mutations processed.
4800 mutations processed.
4900 mutations processed.
Loading chr11: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr11.txt
5000 mutations processed.
5100 mutations processed.
5200 mutations processed.
5300 mutations processed.
5400 mutations processed.
5500 mutations processed.
5600 mutations processed.
5700 mutations processed.
5800 mutations processed.
Loading chr12: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr12.txt
5900 mutations processed.
6000 mutations processed.
6100 mutations processed.
6200 mutations processed.
6300 mutations processed.
Loading chr13: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr13.txt
6400 mutations processed.
6500 mutations processed.
Loading chr14: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr14.txt
6600 mutations processed.
6700 mutations processed.
6800 mutations processed.
Loading chr15: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr15.txt
6900 mutations processed.
7000 mutations processed.
7100 mutations processed.
Loading chr16: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr16.txt
7200 mutations processed.
7300 mutations processed.
7400 mutations processed.
7500 mutations processed.
7600 mutations processed.
7700 mutations processed.
Loading chr17: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr17.txt
7800 mutations processed.
7900 mutations processed.
8000 mutations processed.
8100 mutations processed.
8200 mutations processed.
8300 mutations processed.
Loading chr18: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr18.txt
8400 mutations processed.
8500 mutations processed.
Loading chr19: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr19.txt
8600 mutations processed.
8700 mutations processed.
8800 mutations processed.
8900 mutations processed.
9000 mutations processed.
9100 mutations processed.
9200 mutations processed.
9300 mutations processed.
9400 mutations processed.
Loading chr20: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr20.txt
9500 mutations processed.
9600 mutations processed.
9700 mutations processed.
Loading chr21: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr21.txt
9800 mutations processed.
Loading chr22: /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0/MA.chr22.txt
9900 mutations processed.
10000 mutations processed.
10100 mutations processed.
10200 mutations processed.
10300 mutations processed.
10400 mutations processed.
10500 mutations processed.
10548 mutations processed.
