[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  RPPA_EXPR"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
                                       Clinical feature                        
DAYS_TO_DEATH_OR_LAST_FUP              "DAYS_TO_DEATH_OR_LAST_FUP"             
YEARS_TO_BIRTH                         "YEARS_TO_BIRTH"                        
NEOPLASM_DISEASESTAGE                  "NEOPLASM_DISEASESTAGE"                 
PATHOLOGY_T_STAGE                      "PATHOLOGY_T_STAGE"                     
PATHOLOGY_N_STAGE                      "PATHOLOGY_N_STAGE"                     
PATHOLOGY_M_STAGE                      "PATHOLOGY_M_STAGE"                     
GENDER                                 "GENDER"                                
HISTOLOGICAL_TYPE                      "HISTOLOGICAL_TYPE"                     
RADIATIONS_RADIATION_REGIMENINDICATION "RADIATIONS_RADIATION_REGIMENINDICATION"
RADIATION_EXPOSURE                     "RADIATION_EXPOSURE"                    
EXTRATHYROIDAL_EXTENSION               "EXTRATHYROIDAL_EXTENSION"              
COMPLETENESS_OF_RESECTION              "COMPLETENESS_OF_RESECTION"             
NUMBER_OF_LYMPH_NODES                  "NUMBER_OF_LYMPH_NODES"                 
MULTIFOCALITY                          "MULTIFOCALITY"                         
TUMOR_SIZE                             "TUMOR_SIZE"                            
RACE                                   "RACE"                                  
ETHNICITY                              "ETHNICITY"                             
                                       Statistical test           
DAYS_TO_DEATH_OR_LAST_FUP              "Cox regression test"      
YEARS_TO_BIRTH                         "Spearman correlation test"
NEOPLASM_DISEASESTAGE                  "Kruskal-Wallis test"      
PATHOLOGY_T_STAGE                      "Spearman correlation test"
PATHOLOGY_N_STAGE                      "Wilcoxon test"            
PATHOLOGY_M_STAGE                      "Wilcoxon test"            
GENDER                                 "Wilcoxon test"            
HISTOLOGICAL_TYPE                      "Kruskal-Wallis test"      
RADIATIONS_RADIATION_REGIMENINDICATION "Wilcoxon test"            
RADIATION_EXPOSURE                     "Wilcoxon test"            
EXTRATHYROIDAL_EXTENSION               "Kruskal-Wallis test"      
COMPLETENESS_OF_RESECTION              "Kruskal-Wallis test"      
NUMBER_OF_LYMPH_NODES                  "Spearman correlation test"
MULTIFOCALITY                          "Wilcoxon test"            
TUMOR_SIZE                             "Spearman correlation test"
RACE                                   "Kruskal-Wallis test"      
ETHNICITY                              "Wilcoxon test"            
                                       Significant genes
DAYS_TO_DEATH_OR_LAST_FUP              "N=9"            
YEARS_TO_BIRTH                         "N=30"           
NEOPLASM_DISEASESTAGE                  "N=30"           
PATHOLOGY_T_STAGE                      "N=30"           
PATHOLOGY_N_STAGE                      "N=30"           
PATHOLOGY_M_STAGE                      "N=0"            
GENDER                                 "N=0"            
HISTOLOGICAL_TYPE                      "N=30"           
RADIATIONS_RADIATION_REGIMENINDICATION "N=30"           
RADIATION_EXPOSURE                     "N=0"            
EXTRATHYROIDAL_EXTENSION               "N=30"           
COMPLETENESS_OF_RESECTION              "N=0"            
NUMBER_OF_LYMPH_NODES                  "N=30"           
MULTIFOCALITY                          "N=13"           
TUMOR_SIZE                             "N=2"            
RACE                                   "N=4"            
ETHNICITY                              "N=0"            
                                       Associated with               
DAYS_TO_DEATH_OR_LAST_FUP              "shorter survival"            
YEARS_TO_BIRTH                         "older"                       
NEOPLASM_DISEASESTAGE                  " "                           
PATHOLOGY_T_STAGE                      "higher stage"                
PATHOLOGY_N_STAGE                      "n1"                          
PATHOLOGY_M_STAGE                      " "                           
GENDER                                 " "                           
HISTOLOGICAL_TYPE                      " "                           
RADIATIONS_RADIATION_REGIMENINDICATION "yes"                         
RADIATION_EXPOSURE                     " "                           
EXTRATHYROIDAL_EXTENSION               " "                           
COMPLETENESS_OF_RESECTION              " "                           
NUMBER_OF_LYMPH_NODES                  "higher number_of_lymph_nodes"
MULTIFOCALITY                          "unifocal"                    
TUMOR_SIZE                             "higher tumor_size"           
RACE                                   " "                           
ETHNICITY                              " "                           
                                       &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP              "N=3"                                                                                     
YEARS_TO_BIRTH                         "N=16"                                                                                    
NEOPLASM_DISEASESTAGE                  " "                                                                                       
PATHOLOGY_T_STAGE                      "N=14"                                                                                    
PATHOLOGY_N_STAGE                      "N=30"                                                                                    
PATHOLOGY_M_STAGE                      " "                                                                                       
GENDER                                 " "                                                                                       
HISTOLOGICAL_TYPE                      " "                                                                                       
RADIATIONS_RADIATION_REGIMENINDICATION "N=30"                                                                                    
RADIATION_EXPOSURE                     " "                                                                                       
EXTRATHYROIDAL_EXTENSION               " "                                                                                       
COMPLETENESS_OF_RESECTION              " "                                                                                       
NUMBER_OF_LYMPH_NODES                  "N=18"                                                                                    
MULTIFOCALITY                          "N=13"                                                                                    
TUMOR_SIZE                             "N=0"                                                                                     
RACE                                   " "                                                                                       
ETHNICITY                              " "                                                                                       
                                       Associated with                     
DAYS_TO_DEATH_OR_LAST_FUP              "longer survival"             "N=6" 
YEARS_TO_BIRTH                         "younger"                     "N=14"
NEOPLASM_DISEASESTAGE                  " "                           " "   
PATHOLOGY_T_STAGE                      "lower stage"                 "N=16"
PATHOLOGY_N_STAGE                      "n0"                          "N=0" 
PATHOLOGY_M_STAGE                      " "                           " "   
GENDER                                 " "                           " "   
HISTOLOGICAL_TYPE                      " "                           " "   
RADIATIONS_RADIATION_REGIMENINDICATION "no"                          "N=0" 
RADIATION_EXPOSURE                     " "                           " "   
EXTRATHYROIDAL_EXTENSION               " "                           " "   
COMPLETENESS_OF_RESECTION              " "                           " "   
NUMBER_OF_LYMPH_NODES                  "lower number_of_lymph_nodes" "N=12"
MULTIFOCALITY                          "multifocal"                  "N=0" 
TUMOR_SIZE                             "lower tumor_size"            "N=2" 
RACE                                   " "                           " "   
ETHNICITY                              " "                           " "   
[1] "vtyp==survival in basici table generation"
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "check. how many intervals of data quantile for survival curve?"
[1] 4
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
