
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_TopgenesforCluster/broadinstitute.org/cancer.genome.analysis/00205/39/Topgenes_v1.R")
> result <- main("-s/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_TopgenesforCluster/broadinstitute.org/cancer.genome.analysis/00205/39/", "-m/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MethylationPreprocess/THCA-TP/14529203/THCA-TP.meth.by_max_stddev.data.txt", "-u5301", "-oTHCA-TP")
Cluster size 5301 broken into 810 4491 
Done cluster 810 
Cluster size 4491 broken into 3369 1122 
Cluster size 3369 broken into 2182 1187 
Cluster size 2182 broken into 1095 1087 
Done cluster 1095 
Done cluster 1087 
Done cluster 2182 
Done cluster 1187 
Done cluster 3369 
Done cluster 1122 
Done cluster 4491 
> q(save="no")
