Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
ClinicalAnalysisAllGenes_new:clinical.file.name	UCS-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:137	Correlate_Clinical_vs_mRNAseq_2015040200	table1.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_UCS-TP.Correlate_Clinical_vs_mRNAseq.Level_4.2015040200.0.0	yes
ClinicalAnalysisAllGenes_new:clinical.file.name	UCS-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:137	Correlate_Clinical_vs_mRNAseq_2015040200	supp.table1.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_UCS-TP.Correlate_Clinical_vs_mRNAseq.Level_4.2015040200.0.0	yes
ClinicalAnalysisAllGenes_new:clinical.file.name	UCS-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:137	Correlate_Clinical_vs_mRNAseq_2015040200	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_UCS-TP.Correlate_Clinical_vs_mRNAseq.Level_4.2015040200.0.0	yes
ClinicalAnalysisAllGenes_new:clinical.file.name	UCS-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:137	Correlate_Clinical_vs_mRNAseq_2015040200	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_UCS-TP.Correlate_Clinical_vs_mRNAseq.Level_4.2015040200.0.0	yes
ClinicalAnalysisAllGenes_new:data.file.name	UCS-TP.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_UCS-TP.mRNAseq_Preprocess.Level_3.2015040200.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:137	Correlate_Clinical_vs_mRNAseq_2015040200	table1.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_UCS-TP.Correlate_Clinical_vs_mRNAseq.Level_4.2015040200.0.0	yes
ClinicalAnalysisAllGenes_new:data.file.name	UCS-TP.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_UCS-TP.mRNAseq_Preprocess.Level_3.2015040200.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:137	Correlate_Clinical_vs_mRNAseq_2015040200	supp.table1.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_UCS-TP.Correlate_Clinical_vs_mRNAseq.Level_4.2015040200.0.0	yes
ClinicalAnalysisAllGenes_new:data.file.name	UCS-TP.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_UCS-TP.mRNAseq_Preprocess.Level_3.2015040200.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:137	Correlate_Clinical_vs_mRNAseq_2015040200	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_UCS-TP.Correlate_Clinical_vs_mRNAseq.Level_4.2015040200.0.0	yes
ClinicalAnalysisAllGenes_new:data.file.name	UCS-TP.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_UCS-TP.mRNAseq_Preprocess.Level_3.2015040200.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:137	Correlate_Clinical_vs_mRNAseq_2015040200	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_UCS-TP.Correlate_Clinical_vs_mRNAseq.Level_4.2015040200.0.0	yes
