This pipeline computes the correlation between significant copy number variation (cnv focal) genes and selected clinical features.
Testing the association between copy number variation 63 focal events and 44 clinical features across 292 patients, 9 significant findings detected with Q value < 0.25.
-
amp_11q22.1 cnv correlated to 'YEARS_TO_BIRTH' and 'AGE_AT_DIAGNOSIS'.
-
del_3p14.2 cnv correlated to 'HISTOLOGICAL_TYPE' and 'TOBACCO_SMOKING_HISTORY'.
-
del_10q23.31 cnv correlated to 'YEARS_TO_BIRTH'.
-
del_13q12.11 cnv correlated to 'HISTOLOGICAL_TYPE'.
-
del_16q11.2 cnv correlated to 'HISTOLOGICAL_TYPE'.
-
del_16q23.1 cnv correlated to 'HISTOLOGICAL_TYPE'.
-
del_18q21.2 cnv correlated to 'HISTOLOGICAL_TYPE'.
Clinical Features |
Time to Death |
YEARS TO BIRTH |
PATHOLOGY T STAGE |
PATHOLOGY N STAGE |
PATHOLOGY M STAGE |
HISTOLOGICAL TYPE |
RADIATIONS RADIATION REGIMENINDICATION |
NUMBER PACK YEARS SMOKED |
NUMBER OF LYMPH NODES |
RACE | ETHNICITY |
WEIGHT KG AT DIAGNOSIS |
TUMOR STATUS |
TUMOR SAMPLE PROCUREMENT COUNTRY |
NEOPLASM HISTOLOGIC GRADE |
TOBACCO SMOKING YEAR STOPPED |
TOBACCO SMOKING PACK YEARS SMOKED |
TOBACCO SMOKING HISTORY |
PATIENT AGEBEGANSMOKINGINYEARS |
RADIATION TOTAL DOSE |
RADIATION THERAPY TYPE |
RADIATION THERAPY STATUS |
RADIATION THERAPY SITE |
RADIATION ADJUVANT UNITS |
PREGNANCIES COUNT TOTAL |
PREGNANCIES COUNT STILLBIRTH |
PATIENT PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT |
PREGNANCIES COUNT LIVE BIRTH |
PATIENT PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT |
PREGNANCIES COUNT ECTOPIC |
POS LYMPH NODE LOCATION |
MENOPAUSE STATUS |
LYMPHOVASCULAR INVOLVEMENT |
LYMPH NODES EXAMINED HE COUNT |
LYMPH NODES EXAMINED |
KERATINIZATION SQUAMOUS CELL |
INITIAL PATHOLOGIC DX YEAR |
HISTORY HORMONAL CONTRACEPTIVES USE |
HEIGHT CM AT DIAGNOSIS |
CORPUS INVOLVEMENT |
CERVIX SUV RESULTS |
AJCC TUMOR PATHOLOGIC PT |
AGE AT DIAGNOSIS |
STAGE EVENT CLINICAL STAGE |
||
nCNV (%) | nWild-Type | logrank test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Wilcoxon-test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Wilcoxon-test | Wilcoxon-test | Fisher's exact test | Wilcoxon-test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Wilcoxon-test | Wilcoxon-test | Wilcoxon-test | Wilcoxon-test | Wilcoxon-test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Wilcoxon-test | Wilcoxon-test | Fisher's exact test | Wilcoxon-test | Fisher's exact test | Wilcoxon-test | Fisher's exact test | Wilcoxon-test | Fisher's exact test | Wilcoxon-test | Fisher's exact test | |
amp 11q22 1 | 47 (16%) | 245 |
0.661 (0.986) |
9.79e-05 (0.0554) |
0.391 (0.946) |
1 (1.00) |
1 (1.00) |
0.684 (0.991) |
0.292 (0.879) |
0.0211 (0.511) |
0.952 (1.00) |
0.0243 (0.511) |
0.379 (0.938) |
0.242 (0.853) |
1 (1.00) |
0.687 (0.991) |
0.0209 (0.511) |
0.284 (0.871) |
0.0211 (0.511) |
0.637 (0.981) |
0.69 (0.991) |
0.44 (0.957) |
0.197 (0.8) |
1 (1.00) |
0.00654 (0.509) |
0.218 (0.821) |
0.974 (1.00) |
0.227 (0.831) |
0.493 (0.962) |
0.991 (1.00) |
0.457 (0.957) |
0.345 (0.921) |
0.872 (1.00) |
0.00245 (0.373) |
0.519 (0.968) |
0.952 (1.00) |
0.407 (0.947) |
0.272 (0.864) |
0.00305 (0.373) |
0.72 (1.00) |
0.188 (0.791) |
0.296 (0.885) |
0.147 (0.755) |
0.246 (0.855) |
0.000105 (0.0554) |
0.565 (0.971) |
del 3p14 2 | 132 (45%) | 160 |
0.782 (1.00) |
0.954 (1.00) |
0.0278 (0.534) |
0.00826 (0.509) |
0.754 (1.00) |
0.00012 (0.0554) |
0.0514 (0.603) |
0.61 (0.976) |
0.00495 (0.463) |
0.883 (1.00) |
0.261 (0.861) |
0.011 (0.509) |
0.282 (0.871) |
0.881 (1.00) |
0.127 (0.731) |
0.0951 (0.699) |
0.61 (0.976) |
0.00039 (0.154) |
0.639 (0.981) |
0.0286 (0.539) |
0.186 (0.791) |
1 (1.00) |
0.754 (1.00) |
1 (1.00) |
0.746 (1.00) |
0.144 (0.748) |
0.451 (0.957) |
0.928 (1.00) |
0.763 (1.00) |
0.16 (0.764) |
0.093 (0.699) |
0.946 (1.00) |
0.00307 (0.373) |
0.00495 (0.463) |
0.369 (0.937) |
0.492 (0.962) |
0.0153 (0.509) |
0.0343 (0.546) |
0.591 (0.973) |
0.421 (0.957) |
0.063 (0.654) |
0.133 (0.732) |
0.968 (1.00) |
0.048 (0.591) |
del 10q23 31 | 86 (29%) | 206 |
0.455 (0.957) |
0.000738 (0.227) |
0.315 (0.897) |
0.269 (0.861) |
0.707 (0.999) |
0.99 (1.00) |
0.0916 (0.699) |
0.949 (1.00) |
0.096 (0.699) |
0.0174 (0.509) |
1 (1.00) |
0.44 (0.957) |
0.558 (0.97) |
0.0596 (0.636) |
0.00596 (0.501) |
0.263 (0.861) |
0.949 (1.00) |
0.0941 (0.699) |
0.127 (0.731) |
0.151 (0.761) |
0.161 (0.764) |
1 (1.00) |
0.133 (0.732) |
1 (1.00) |
0.0927 (0.699) |
0.854 (1.00) |
0.73 (1.00) |
0.0112 (0.509) |
0.779 (1.00) |
0.715 (1.00) |
0.024 (0.511) |
0.0176 (0.509) |
0.197 (0.8) |
0.096 (0.699) |
0.261 (0.861) |
0.0887 (0.699) |
0.0208 (0.511) |
0.546 (0.97) |
0.272 (0.864) |
0.76 (1.00) |
0.526 (0.969) |
0.0827 (0.687) |
0.000958 (0.265) |
0.386 (0.942) |
del 13q12 11 | 97 (33%) | 195 |
0.181 (0.789) |
0.842 (1.00) |
0.093 (0.699) |
0.113 (0.71) |
0.29 (0.877) |
0.00045 (0.156) |
0.106 (0.706) |
0.58 (0.973) |
0.0174 (0.509) |
0.109 (0.708) |
0.343 (0.919) |
0.14 (0.739) |
0.705 (0.997) |
0.943 (1.00) |
0.0919 (0.699) |
0.645 (0.983) |
0.58 (0.973) |
0.0547 (0.609) |
0.109 (0.708) |
0.704 (0.996) |
0.427 (0.957) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.159 (0.764) |
0.98 (1.00) |
0.616 (0.977) |
0.225 (0.83) |
0.63 (0.979) |
0.263 (0.861) |
0.96 (1.00) |
0.656 (0.986) |
0.211 (0.811) |
0.0174 (0.509) |
0.435 (0.957) |
0.722 (1.00) |
0.0184 (0.509) |
0.73 (1.00) |
0.67 (0.988) |
0.236 (0.843) |
0.317 (0.898) |
0.185 (0.791) |
0.988 (1.00) |
0.0149 (0.509) |
del 16q11 2 | 53 (18%) | 239 |
0.842 (1.00) |
0.376 (0.938) |
0.871 (1.00) |
0.0154 (0.509) |
1 (1.00) |
2e-05 (0.0277) |
0.803 (1.00) |
0.265 (0.861) |
0.0788 (0.687) |
0.404 (0.947) |
0.771 (1.00) |
0.969 (1.00) |
0.329 (0.907) |
0.985 (1.00) |
0.506 (0.964) |
0.48 (0.962) |
0.265 (0.861) |
0.314 (0.896) |
0.22 (0.821) |
0.18 (0.789) |
0.691 (0.991) |
1 (1.00) |
0.871 (1.00) |
0.218 (0.821) |
0.285 (0.871) |
0.879 (1.00) |
0.499 (0.962) |
0.576 (0.973) |
0.994 (1.00) |
0.0846 (0.688) |
0.908 (1.00) |
0.113 (0.71) |
0.401 (0.947) |
0.0788 (0.687) |
0.734 (1.00) |
0.0699 (0.682) |
0.802 (1.00) |
0.763 (1.00) |
0.544 (0.97) |
0.115 (0.71) |
0.35 (0.926) |
0.323 (0.901) |
0.459 (0.957) |
|
del 16q23 1 | 55 (19%) | 237 |
0.462 (0.957) |
0.237 (0.847) |
0.946 (1.00) |
0.413 (0.952) |
0.685 (0.991) |
5e-05 (0.0462) |
0.468 (0.959) |
0.265 (0.861) |
0.399 (0.947) |
0.0083 (0.509) |
0.378 (0.938) |
0.436 (0.957) |
0.627 (0.979) |
0.986 (1.00) |
0.208 (0.811) |
0.606 (0.974) |
0.265 (0.861) |
0.5 (0.962) |
0.983 (1.00) |
0.195 (0.797) |
0.92 (1.00) |
0.551 (0.97) |
1 (1.00) |
1 (1.00) |
0.0949 (0.699) |
0.879 (1.00) |
0.443 (0.957) |
0.424 (0.957) |
0.0254 (0.516) |
0.311 (0.896) |
1 (1.00) |
0.752 (1.00) |
0.667 (0.986) |
0.399 (0.947) |
0.909 (1.00) |
0.137 (0.739) |
0.476 (0.962) |
0.914 (1.00) |
0.415 (0.952) |
0.515 (0.967) |
0.853 (1.00) |
0.191 (0.794) |
0.979 (1.00) |
|
del 18q21 2 | 82 (28%) | 210 |
0.965 (1.00) |
0.612 (0.976) |
0.654 (0.986) |
0.354 (0.93) |
0.152 (0.761) |
1e-05 (0.0277) |
0.523 (0.969) |
0.588 (0.973) |
0.053 (0.603) |
0.948 (1.00) |
0.603 (0.973) |
0.109 (0.708) |
0.556 (0.97) |
0.731 (1.00) |
0.258 (0.861) |
1 (1.00) |
0.588 (0.973) |
0.427 (0.957) |
0.385 (0.942) |
0.829 (1.00) |
0.804 (1.00) |
1 (1.00) |
0.891 (1.00) |
1 (1.00) |
0.0817 (0.687) |
0.123 (0.723) |
0.774 (1.00) |
0.164 (0.766) |
0.887 (1.00) |
0.884 (1.00) |
0.561 (0.97) |
0.657 (0.986) |
0.0489 (0.594) |
0.053 (0.603) |
0.923 (1.00) |
0.541 (0.97) |
0.0274 (0.534) |
0.626 (0.979) |
0.472 (0.961) |
0.066 (0.661) |
0.465 (0.957) |
0.543 (0.97) |
0.0728 (0.687) |
|
amp 1p31 3 | 96 (33%) | 196 |
0.475 (0.962) |
0.0031 (0.373) |
0.334 (0.913) |
0.859 (1.00) |
0.496 (0.962) |
0.288 (0.874) |
0.839 (1.00) |
0.193 (0.795) |
0.526 (0.969) |
0.432 (0.957) |
0.101 (0.699) |
0.876 (1.00) |
0.7 (0.994) |
0.599 (0.973) |
0.862 (1.00) |
0.614 (0.977) |
0.193 (0.795) |
0.489 (0.962) |
0.825 (1.00) |
0.738 (1.00) |
0.26 (0.861) |
1 (1.00) |
0.841 (1.00) |
1 (1.00) |
0.0136 (0.509) |
0.397 (0.947) |
0.911 (1.00) |
0.286 (0.872) |
0.162 (0.764) |
0.948 (1.00) |
0.449 (0.957) |
0.014 (0.509) |
0.86 (1.00) |
0.526 (0.969) |
0.492 (0.962) |
0.369 (0.937) |
0.576 (0.973) |
0.0434 (0.576) |
0.316 (0.897) |
0.571 (0.973) |
0.464 (0.957) |
0.371 (0.937) |
0.00288 (0.373) |
0.43 (0.957) |
amp 1q21 3 | 157 (54%) | 135 |
0.796 (1.00) |
0.166 (0.768) |
0.0305 (0.539) |
0.629 (0.979) |
0.183 (0.789) |
0.248 (0.855) |
0.847 (1.00) |
0.722 (1.00) |
0.578 (0.973) |
0.00452 (0.463) |
0.505 (0.964) |
0.108 (0.708) |
0.0512 (0.603) |
0.799 (1.00) |
0.305 (0.896) |
0.743 (1.00) |
0.722 (1.00) |
0.908 (1.00) |
0.597 (0.973) |
0.695 (0.992) |
0.0182 (0.509) |
0.56 (0.97) |
0.55 (0.97) |
1 (1.00) |
0.167 (0.77) |
0.497 (0.962) |
0.583 (0.973) |
0.24 (0.849) |
0.987 (1.00) |
0.00592 (0.501) |
0.822 (1.00) |
0.314 (0.896) |
0.617 (0.978) |
0.578 (0.973) |
0.861 (1.00) |
0.864 (1.00) |
0.879 (1.00) |
0.26 (0.861) |
0.0304 (0.539) |
0.44 (0.957) |
0.291 (0.879) |
0.00307 (0.373) |
0.151 (0.761) |
0.357 (0.931) |
amp 1q44 | 152 (52%) | 140 |
0.516 (0.968) |
0.264 (0.861) |
0.0488 (0.594) |
0.519 (0.968) |
0.183 (0.789) |
0.0542 (0.607) |
0.122 (0.723) |
0.34 (0.918) |
0.295 (0.885) |
0.0161 (0.509) |
0.268 (0.861) |
0.23 (0.832) |
0.154 (0.761) |
0.713 (1.00) |
0.176 (0.783) |
0.809 (1.00) |
0.34 (0.918) |
0.675 (0.99) |
0.757 (1.00) |
0.178 (0.787) |
0.00117 (0.27) |
1 (1.00) |
0.83 (1.00) |
0.671 (0.988) |
0.809 (1.00) |
0.497 (0.962) |
0.592 (0.973) |
0.81 (1.00) |
0.422 (0.957) |
0.316 (0.898) |
0.872 (1.00) |
0.162 (0.764) |
0.0664 (0.662) |
0.295 (0.885) |
0.889 (1.00) |
0.495 (0.962) |
0.847 (1.00) |
0.331 (0.907) |
0.0979 (0.699) |
0.794 (1.00) |
0.807 (1.00) |
0.0151 (0.509) |
0.238 (0.847) |
0.761 (1.00) |
amp 2p24 3 | 79 (27%) | 213 |
0.826 (1.00) |
0.911 (1.00) |
0.571 (0.973) |
0.714 (1.00) |
0.483 (0.962) |
0.496 (0.962) |
0.2 (0.804) |
0.168 (0.77) |
0.488 (0.962) |
0.533 (0.97) |
1 (1.00) |
0.389 (0.945) |
0.691 (0.991) |
0.455 (0.957) |
0.398 (0.947) |
0.16 (0.764) |
0.168 (0.77) |
0.796 (1.00) |
0.68 (0.991) |
0.116 (0.711) |
0.425 (0.957) |
1 (1.00) |
0.381 (0.938) |
1 (1.00) |
0.443 (0.957) |
0.175 (0.783) |
0.252 (0.858) |
0.427 (0.957) |
0.731 (1.00) |
0.0763 (0.687) |
0.939 (1.00) |
1 (1.00) |
0.705 (0.998) |
0.488 (0.962) |
0.582 (0.973) |
0.844 (1.00) |
0.906 (1.00) |
0.576 (0.973) |
0.723 (1.00) |
0.368 (0.937) |
0.014 (0.509) |
0.473 (0.961) |
0.858 (1.00) |
0.413 (0.952) |
amp 2q33 1 | 41 (14%) | 251 |
0.987 (1.00) |
0.283 (0.871) |
0.874 (1.00) |
0.0786 (0.687) |
1 (1.00) |
0.474 (0.962) |
0.588 (0.973) |
0.788 (1.00) |
0.0367 (0.546) |
0.255 (0.861) |
0.743 (1.00) |
0.0396 (0.552) |
1 (1.00) |
0.222 (0.825) |
0.833 (1.00) |
0.471 (0.961) |
0.788 (1.00) |
0.626 (0.979) |
0.0667 (0.663) |
0.884 (1.00) |
0.784 (1.00) |
0.459 (0.957) |
1 (1.00) |
0.415 (0.952) |
0.608 (0.976) |
0.331 (0.907) |
0.668 (0.986) |
0.605 (0.974) |
0.541 (0.97) |
0.0217 (0.511) |
1 (1.00) |
0.595 (0.973) |
0.0476 (0.59) |
0.0367 (0.546) |
0.467 (0.958) |
0.602 (0.973) |
0.146 (0.753) |
0.215 (0.821) |
0.543 (0.97) |
0.395 (0.947) |
0.485 (0.962) |
0.282 (0.871) |
0.727 (1.00) |
|
amp 3q26 31 | 226 (77%) | 66 |
0.814 (1.00) |
0.922 (1.00) |
0.267 (0.861) |
0.0229 (0.511) |
1 (1.00) |
0.0244 (0.511) |
0.253 (0.86) |
0.961 (1.00) |
0.00958 (0.509) |
0.0137 (0.509) |
0.439 (0.957) |
0.0475 (0.59) |
1 (1.00) |
0.398 (0.947) |
0.859 (1.00) |
0.794 (1.00) |
0.961 (1.00) |
0.799 (1.00) |
0.0498 (0.597) |
0.425 (0.957) |
0.407 (0.947) |
0.382 (0.938) |
0.0227 (0.511) |
1 (1.00) |
0.0302 (0.539) |
0.132 (0.732) |
0.743 (1.00) |
0.109 (0.708) |
0.544 (0.97) |
0.053 (0.603) |
0.455 (0.957) |
0.586 (0.973) |
0.239 (0.848) |
0.00958 (0.509) |
0.485 (0.962) |
0.839 (1.00) |
0.781 (1.00) |
0.962 (1.00) |
0.162 (0.764) |
0.758 (1.00) |
0.869 (1.00) |
1 (1.00) |
0.908 (1.00) |
|
amp 3q28 | 223 (76%) | 69 |
0.498 (0.962) |
0.664 (0.986) |
0.285 (0.871) |
0.0401 (0.555) |
0.248 (0.855) |
0.0239 (0.511) |
0.496 (0.962) |
0.907 (1.00) |
0.02 (0.511) |
0.203 (0.808) |
0.8 (1.00) |
0.0797 (0.687) |
0.526 (0.969) |
0.594 (0.973) |
0.829 (1.00) |
0.794 (1.00) |
0.907 (1.00) |
0.775 (1.00) |
0.0988 (0.699) |
0.737 (1.00) |
0.397 (0.947) |
0.459 (0.957) |
0.0185 (0.509) |
1 (1.00) |
0.0492 (0.594) |
0.132 (0.732) |
0.907 (1.00) |
0.271 (0.864) |
0.677 (0.99) |
0.053 (0.603) |
0.453 (0.957) |
0.464 (0.957) |
0.701 (0.994) |
0.02 (0.511) |
0.655 (0.986) |
0.839 (1.00) |
0.514 (0.966) |
0.925 (1.00) |
0.105 (0.705) |
0.555 (0.97) |
0.825 (1.00) |
0.592 (0.973) |
0.982 (1.00) |
|
amp 4q12 | 21 (7%) | 271 |
0.268 (0.861) |
0.519 (0.968) |
0.0458 (0.588) |
0.363 (0.937) |
0.522 (0.969) |
0.462 (0.957) |
0.25 (0.857) |
0.987 (1.00) |
0.818 (1.00) |
0.43 (0.957) |
1 (1.00) |
0.37 (0.937) |
0.479 (0.962) |
0.679 (0.991) |
0.0898 (0.699) |
0.0672 (0.663) |
0.987 (1.00) |
0.48 (0.962) |
0.676 (0.99) |
0.715 (1.00) |
0.304 (0.895) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.376 (0.938) |
0.513 (0.966) |
0.639 (0.981) |
0.276 (0.869) |
0.433 (0.957) |
0.793 (1.00) |
0.658 (0.986) |
0.677 (0.99) |
0.209 (0.811) |
0.818 (1.00) |
0.831 (1.00) |
0.725 (1.00) |
0.287 (0.874) |
0.0508 (0.603) |
0.796 (1.00) |
0.587 (0.973) |
0.571 (0.973) |
0.00652 (0.509) |
0.553 (0.97) |
0.0795 (0.687) |
amp 5p15 33 | 137 (47%) | 155 |
0.66 (0.986) |
0.723 (1.00) |
0.184 (0.79) |
1 (1.00) |
0.0944 (0.699) |
0.0141 (0.509) |
0.447 (0.957) |
0.549 (0.97) |
0.875 (1.00) |
0.748 (1.00) |
0.268 (0.861) |
0.867 (1.00) |
0.858 (1.00) |
0.951 (1.00) |
0.0277 (0.534) |
0.99 (1.00) |
0.549 (0.97) |
0.606 (0.974) |
0.446 (0.957) |
0.402 (0.947) |
0.444 (0.957) |
0.56 (0.97) |
0.0812 (0.687) |
0.647 (0.983) |
0.233 (0.84) |
0.597 (0.973) |
0.832 (1.00) |
0.0114 (0.509) |
0.0797 (0.687) |
0.544 (0.97) |
0.511 (0.966) |
0.645 (0.983) |
0.493 (0.962) |
0.875 (1.00) |
0.127 (0.731) |
0.0856 (0.692) |
0.493 (0.962) |
0.782 (1.00) |
0.965 (1.00) |
1 (1.00) |
0.665 (0.986) |
0.0632 (0.654) |
0.814 (1.00) |
0.0144 (0.509) |
amp 6p21 33 | 82 (28%) | 210 |
0.412 (0.951) |
0.885 (1.00) |
0.892 (1.00) |
0.476 (0.962) |
1 (1.00) |
0.628 (0.979) |
0.523 (0.969) |
0.155 (0.761) |
0.565 (0.971) |
0.794 (1.00) |
0.802 (1.00) |
0.424 (0.957) |
0.246 (0.855) |
0.219 (0.821) |
0.0763 (0.687) |
0.966 (1.00) |
0.155 (0.761) |
0.519 (0.968) |
0.361 (0.934) |
0.0627 (0.654) |
0.496 (0.962) |
1 (1.00) |
0.692 (0.991) |
1 (1.00) |
0.356 (0.931) |
0.856 (1.00) |
0.648 (0.984) |
0.37 (0.937) |
0.969 (1.00) |
0.11 (0.708) |
1 (1.00) |
0.392 (0.946) |
0.568 (0.973) |
0.565 (0.971) |
0.736 (1.00) |
0.845 (1.00) |
0.147 (0.755) |
0.228 (0.832) |
0.432 (0.957) |
0.134 (0.734) |
0.562 (0.97) |
0.819 (1.00) |
0.842 (1.00) |
0.441 (0.957) |
amp 7p11 2 | 52 (18%) | 240 |
0.11 (0.708) |
0.92 (1.00) |
0.0176 (0.509) |
0.169 (0.772) |
0.182 (0.789) |
0.459 (0.957) |
0.206 (0.81) |
0.0375 (0.546) |
0.0764 (0.687) |
0.575 (0.973) |
1 (1.00) |
0.19 (0.793) |
0.0947 (0.699) |
0.491 (0.962) |
0.116 (0.71) |
0.477 (0.962) |
0.0375 (0.546) |
0.404 (0.947) |
0.345 (0.921) |
0.319 (0.899) |
0.343 (0.919) |
0.188 (0.791) |
0.125 (0.728) |
0.627 (0.979) |
0.374 (0.937) |
0.926 (1.00) |
0.141 (0.74) |
0.403 (0.947) |
0.573 (0.973) |
0.935 (1.00) |
0.112 (0.71) |
0.853 (1.00) |
0.0362 (0.546) |
0.0764 (0.687) |
0.819 (1.00) |
0.391 (0.946) |
0.22 (0.821) |
1 (1.00) |
0.934 (1.00) |
1 (1.00) |
0.00193 (0.373) |
0.938 (1.00) |
0.0169 (0.509) |
|
amp 8q24 21 | 126 (43%) | 166 |
0.477 (0.962) |
0.512 (0.966) |
0.064 (0.655) |
0.332 (0.908) |
0.322 (0.901) |
0.2 (0.803) |
0.56 (0.97) |
0.349 (0.925) |
0.451 (0.957) |
0.795 (1.00) |
1 (1.00) |
0.759 (1.00) |
0.106 (0.706) |
0.973 (1.00) |
0.149 (0.758) |
0.258 (0.861) |
0.349 (0.925) |
0.723 (1.00) |
0.52 (0.968) |
0.0163 (0.509) |
0.593 (0.973) |
0.543 (0.97) |
0.504 (0.964) |
1 (1.00) |
0.595 (0.973) |
0.596 (0.973) |
0.934 (1.00) |
0.688 (0.991) |
0.707 (0.999) |
0.498 (0.962) |
0.129 (0.732) |
0.823 (1.00) |
0.387 (0.942) |
0.451 (0.957) |
0.132 (0.732) |
0.732 (1.00) |
0.49 (0.962) |
0.262 (0.861) |
0.977 (1.00) |
0.28 (0.871) |
0.961 (1.00) |
0.0749 (0.687) |
0.511 (0.966) |
0.211 (0.812) |
amp 9p24 1 | 63 (22%) | 229 |
0.211 (0.811) |
0.175 (0.783) |
0.163 (0.764) |
0.00491 (0.463) |
0.684 (0.991) |
0.876 (1.00) |
0.349 (0.925) |
0.0828 (0.687) |
0.0105 (0.509) |
0.0412 (0.558) |
0.77 (1.00) |
0.149 (0.758) |
0.0106 (0.509) |
0.236 (0.843) |
0.338 (0.917) |
0.381 (0.938) |
0.0828 (0.687) |
0.369 (0.937) |
0.548 (0.97) |
0.801 (1.00) |
0.408 (0.947) |
1 (1.00) |
1 (1.00) |
0.599 (0.973) |
0.451 (0.957) |
0.685 (0.991) |
0.105 (0.705) |
0.0578 (0.624) |
0.219 (0.821) |
1 (1.00) |
0.444 (0.957) |
0.581 (0.973) |
0.227 (0.831) |
0.0105 (0.509) |
0.194 (0.797) |
0.132 (0.732) |
0.0139 (0.509) |
0.139 (0.739) |
0.497 (0.962) |
0.732 (1.00) |
0.85 (1.00) |
0.232 (0.837) |
0.15 (0.76) |
0.241 (0.853) |
amp 11p12 | 23 (8%) | 269 |
0.646 (0.983) |
0.0287 (0.539) |
0.264 (0.861) |
0.312 (0.896) |
0.566 (0.971) |
0.702 (0.996) |
0.0719 (0.687) |
0.261 (0.861) |
0.0382 (0.546) |
0.309 (0.896) |
0.0468 (0.59) |
0.0636 (0.654) |
0.0806 (0.687) |
0.155 (0.762) |
0.248 (0.855) |
0.261 (0.861) |
0.241 (0.852) |
0.679 (0.991) |
0.799 (1.00) |
0.402 (0.947) |
0.459 (0.957) |
1 (1.00) |
0.358 (0.932) |
0.0978 (0.699) |
0.513 (0.966) |
0.438 (0.957) |
0.618 (0.978) |
0.312 (0.896) |
0.202 (0.808) |
1 (1.00) |
0.598 (0.973) |
0.32 (0.899) |
0.0382 (0.546) |
0.982 (1.00) |
0.284 (0.871) |
0.467 (0.958) |
0.189 (0.791) |
0.405 (0.947) |
1 (1.00) |
0.659 (0.986) |
0.172 (0.778) |
0.0255 (0.516) |
0.805 (1.00) |
|
amp 11q13 3 | 41 (14%) | 251 |
0.83 (1.00) |
0.339 (0.918) |
0.927 (1.00) |
0.451 (0.957) |
0.615 (0.977) |
0.612 (0.976) |
0.16 (0.764) |
0.0373 (0.546) |
0.216 (0.821) |
0.435 (0.957) |
0.319 (0.899) |
0.0876 (0.699) |
0.309 (0.896) |
0.905 (1.00) |
0.0132 (0.509) |
1 (1.00) |
0.0373 (0.546) |
0.429 (0.957) |
0.207 (0.81) |
0.554 (0.97) |
0.478 (0.962) |
1 (1.00) |
0.251 (0.858) |
1 (1.00) |
0.789 (1.00) |
0.331 (0.907) |
0.737 (1.00) |
0.827 (1.00) |
0.684 (0.991) |
0.622 (0.979) |
1 (1.00) |
0.631 (0.979) |
0.452 (0.957) |
0.216 (0.821) |
0.412 (0.951) |
0.467 (0.958) |
0.203 (0.808) |
0.547 (0.97) |
0.91 (1.00) |
0.687 (0.991) |
0.0677 (0.666) |
0.123 (0.723) |
0.34 (0.918) |
0.363 (0.937) |
amp 13q22 1 | 65 (22%) | 227 |
0.431 (0.957) |
0.476 (0.962) |
0.148 (0.757) |
0.695 (0.992) |
0.114 (0.71) |
0.625 (0.979) |
1 (1.00) |
0.354 (0.93) |
0.0961 (0.699) |
0.737 (1.00) |
0.0301 (0.539) |
0.554 (0.97) |
0.205 (0.81) |
0.473 (0.961) |
0.748 (1.00) |
0.911 (1.00) |
0.354 (0.93) |
0.37 (0.937) |
0.0929 (0.699) |
0.285 (0.871) |
0.962 (1.00) |
0.53 (0.97) |
0.911 (1.00) |
0.573 (0.973) |
0.82 (1.00) |
0.674 (0.99) |
0.492 (0.962) |
0.628 (0.979) |
0.134 (0.734) |
0.943 (1.00) |
0.486 (0.962) |
0.916 (1.00) |
0.0724 (0.687) |
0.0961 (0.699) |
0.507 (0.965) |
0.669 (0.987) |
0.508 (0.966) |
0.257 (0.861) |
0.558 (0.97) |
0.518 (0.968) |
0.0979 (0.699) |
0.517 (0.968) |
0.102 (0.7) |
|
amp 13q34 | 69 (24%) | 223 |
0.612 (0.976) |
0.93 (1.00) |
0.965 (1.00) |
1 (1.00) |
1 (1.00) |
0.695 (0.992) |
0.182 (0.789) |
0.94 (1.00) |
0.469 (0.959) |
0.765 (1.00) |
0.296 (0.885) |
0.93 (1.00) |
0.405 (0.947) |
0.748 (1.00) |
0.195 (0.797) |
0.216 (0.821) |
0.94 (1.00) |
0.0887 (0.699) |
0.629 (0.979) |
0.666 (0.986) |
0.296 (0.885) |
0.0452 (0.582) |
0.86 (1.00) |
1 (1.00) |
0.793 (1.00) |
0.55 (0.97) |
0.441 (0.957) |
0.624 (0.979) |
0.775 (1.00) |
0.0366 (0.546) |
0.634 (0.98) |
0.613 (0.976) |
0.153 (0.761) |
0.469 (0.959) |
0.726 (1.00) |
0.154 (0.761) |
0.529 (0.97) |
1 (1.00) |
0.412 (0.951) |
0.19 (0.792) |
0.184 (0.79) |
0.97 (1.00) |
0.636 (0.981) |
|
amp 15q26 1 | 76 (26%) | 216 |
0.684 (0.991) |
0.0384 (0.546) |
0.103 (0.703) |
0.461 (0.957) |
0.115 (0.71) |
0.0797 (0.687) |
1 (1.00) |
0.86 (1.00) |
0.807 (1.00) |
0.211 (0.811) |
0.623 (0.979) |
0.762 (1.00) |
0.842 (1.00) |
0.958 (1.00) |
0.176 (0.783) |
0.322 (0.901) |
0.86 (1.00) |
0.273 (0.864) |
0.623 (0.979) |
0.839 (1.00) |
0.979 (1.00) |
1 (1.00) |
0.88 (1.00) |
0.641 (0.981) |
0.0412 (0.558) |
0.814 (1.00) |
0.681 (0.991) |
0.0518 (0.603) |
0.14 (0.739) |
0.385 (0.942) |
0.143 (0.746) |
0.277 (0.87) |
0.701 (0.994) |
0.807 (1.00) |
0.915 (1.00) |
1 (1.00) |
0.798 (1.00) |
0.0725 (0.687) |
0.232 (0.837) |
0.534 (0.97) |
0.193 (0.795) |
0.135 (0.737) |
0.0296 (0.539) |
0.517 (0.968) |
amp 16p13 13 | 65 (22%) | 227 |
0.832 (1.00) |
0.418 (0.954) |
0.101 (0.699) |
0.25 (0.857) |
0.69 (0.991) |
0.992 (1.00) |
1 (1.00) |
0.313 (0.896) |
0.0812 (0.687) |
0.307 (0.896) |
0.771 (1.00) |
0.454 (0.957) |
0.126 (0.731) |
0.1 (0.699) |
0.886 (1.00) |
0.16 (0.764) |
0.313 (0.896) |
0.477 (0.962) |
0.531 (0.97) |
0.91 (1.00) |
0.742 (1.00) |
1 (1.00) |
1 (1.00) |
0.58 (0.973) |
0.0168 (0.509) |
0.674 (0.99) |
0.574 (0.973) |
0.0232 (0.511) |
0.676 (0.99) |
0.023 (0.511) |
0.686 (0.991) |
0.338 (0.917) |
0.56 (0.97) |
0.0812 (0.687) |
0.5 (0.962) |
1 (1.00) |
0.347 (0.923) |
0.182 (0.789) |
0.55 (0.97) |
0.329 (0.907) |
0.162 (0.764) |
0.444 (0.957) |
0.759 (1.00) |
|
amp 17q12 | 54 (18%) | 238 |
0.804 (1.00) |
0.64 (0.981) |
0.258 (0.861) |
0.507 (0.965) |
1 (1.00) |
0.0579 (0.624) |
0.62 (0.979) |
0.19 (0.792) |
0.307 (0.896) |
0.828 (1.00) |
0.387 (0.942) |
0.508 (0.965) |
0.824 (1.00) |
0.693 (0.992) |
0.121 (0.722) |
0.16 (0.764) |
0.19 (0.792) |
0.313 (0.896) |
0.668 (0.986) |
0.823 (1.00) |
0.762 (1.00) |
1 (1.00) |
0.462 (0.957) |
1 (1.00) |
0.0904 (0.699) |
0.258 (0.861) |
0.269 (0.861) |
0.271 (0.864) |
0.286 (0.872) |
0.431 (0.957) |
0.758 (1.00) |
0.98 (1.00) |
0.662 (0.986) |
0.307 (0.896) |
0.71 (1.00) |
0.315 (0.897) |
0.603 (0.973) |
0.828 (1.00) |
0.07 (0.682) |
1 (1.00) |
0.396 (0.947) |
0.203 (0.808) |
0.66 (0.986) |
0.862 (1.00) |
amp 17q25 1 | 73 (25%) | 219 |
0.871 (1.00) |
0.741 (1.00) |
0.16 (0.764) |
0.188 (0.791) |
0.262 (0.861) |
0.101 (0.699) |
0.373 (0.937) |
0.21 (0.811) |
0.0586 (0.627) |
0.549 (0.97) |
0.449 (0.957) |
0.295 (0.885) |
1 (1.00) |
0.733 (1.00) |
0.0702 (0.682) |
0.823 (1.00) |
0.21 (0.811) |
0.323 (0.901) |
0.256 (0.861) |
0.724 (1.00) |
0.727 (1.00) |
1 (1.00) |
0.0372 (0.546) |
1 (1.00) |
0.195 (0.797) |
0.163 (0.764) |
0.816 (1.00) |
0.191 (0.794) |
0.372 (0.937) |
0.441 (0.957) |
1 (1.00) |
0.882 (1.00) |
0.079 (0.687) |
0.0586 (0.627) |
0.381 (0.938) |
0.154 (0.761) |
0.814 (1.00) |
0.367 (0.937) |
0.433 (0.957) |
0.764 (1.00) |
0.396 (0.947) |
0.0766 (0.687) |
0.786 (1.00) |
0.259 (0.861) |
amp 19p13 3 | 38 (13%) | 254 |
0.0925 (0.699) |
0.303 (0.895) |
0.408 (0.947) |
0.251 (0.858) |
0.596 (0.973) |
0.954 (1.00) |
0.779 (1.00) |
0.585 (0.973) |
0.0822 (0.687) |
0.81 (1.00) |
1 (1.00) |
0.556 (0.97) |
0.802 (1.00) |
0.298 (0.885) |
0.828 (1.00) |
0.601 (0.973) |
0.585 (0.973) |
0.268 (0.861) |
0.0407 (0.558) |
0.341 (0.918) |
0.492 (0.962) |
1 (1.00) |
0.405 (0.947) |
1 (1.00) |
0.337 (0.916) |
0.824 (1.00) |
0.268 (0.861) |
0.03 (0.539) |
0.0773 (0.687) |
0.695 (0.992) |
1 (1.00) |
0.703 (0.996) |
0.1 (0.699) |
0.0822 (0.687) |
0.538 (0.97) |
0.0375 (0.546) |
0.831 (1.00) |
0.2 (0.803) |
0.0472 (0.59) |
1 (1.00) |
0.659 (0.986) |
0.139 (0.739) |
0.239 (0.848) |
0.267 (0.861) |
amp 19p13 2 | 42 (14%) | 250 |
0.0368 (0.546) |
0.486 (0.962) |
0.58 (0.973) |
0.67 (0.988) |
1 (1.00) |
0.681 (0.991) |
0.407 (0.947) |
0.863 (1.00) |
0.472 (0.961) |
0.56 (0.97) |
0.744 (1.00) |
0.961 (1.00) |
0.14 (0.739) |
0.137 (0.739) |
0.868 (1.00) |
0.379 (0.938) |
0.863 (1.00) |
0.201 (0.805) |
0.0487 (0.594) |
0.607 (0.975) |
0.626 (0.979) |
1 (1.00) |
0.209 (0.811) |
0.563 (0.97) |
0.632 (0.979) |
0.824 (1.00) |
0.197 (0.8) |
0.17 (0.775) |
0.631 (0.979) |
0.163 (0.764) |
1 (1.00) |
0.569 (0.973) |
0.811 (1.00) |
0.472 (0.961) |
0.221 (0.823) |
0.00518 (0.463) |
0.388 (0.945) |
0.532 (0.97) |
0.115 (0.71) |
0.12 (0.722) |
0.571 (0.973) |
0.415 (0.952) |
0.402 (0.947) |
0.808 (1.00) |
amp 19q13 13 | 91 (31%) | 201 |
0.746 (1.00) |
0.136 (0.738) |
0.026 (0.521) |
0.113 (0.71) |
0.277 (0.87) |
0.342 (0.918) |
0.147 (0.755) |
0.756 (1.00) |
0.145 (0.752) |
0.814 (1.00) |
0.347 (0.923) |
0.931 (1.00) |
0.452 (0.957) |
0.264 (0.861) |
0.79 (1.00) |
0.771 (1.00) |
0.756 (1.00) |
0.0172 (0.509) |
0.514 (0.966) |
0.912 (1.00) |
0.368 (0.937) |
0.56 (0.97) |
0.0955 (0.699) |
0.645 (0.983) |
0.131 (0.732) |
0.769 (1.00) |
0.047 (0.59) |
0.0528 (0.603) |
0.736 (1.00) |
0.131 (0.732) |
0.138 (0.739) |
0.345 (0.921) |
0.204 (0.809) |
0.145 (0.752) |
0.377 (0.938) |
0.197 (0.8) |
0.433 (0.957) |
0.641 (0.981) |
0.508 (0.965) |
0.236 (0.843) |
0.753 (1.00) |
0.289 (0.874) |
0.128 (0.732) |
0.165 (0.766) |
amp 20q11 21 | 134 (46%) | 158 |
0.465 (0.957) |
0.037 (0.546) |
0.0145 (0.509) |
0.514 (0.966) |
0.337 (0.917) |
0.806 (1.00) |
0.848 (1.00) |
0.918 (1.00) |
0.261 (0.861) |
0.0247 (0.511) |
0.114 (0.71) |
0.153 (0.761) |
0.592 (0.973) |
0.1 (0.699) |
0.65 (0.986) |
0.667 (0.986) |
0.918 (1.00) |
0.206 (0.81) |
0.674 (0.99) |
0.944 (1.00) |
0.698 (0.993) |
0.56 (0.97) |
0.753 (1.00) |
0.662 (0.986) |
0.0763 (0.687) |
0.742 (1.00) |
0.994 (1.00) |
0.195 (0.797) |
0.837 (1.00) |
0.545 (0.97) |
0.117 (0.712) |
0.367 (0.937) |
0.615 (0.977) |
0.261 (0.861) |
0.611 (0.976) |
0.388 (0.944) |
0.28 (0.871) |
0.76 (1.00) |
0.353 (0.93) |
0.439 (0.957) |
0.493 (0.962) |
0.0832 (0.687) |
0.0242 (0.511) |
0.577 (0.973) |
amp 21q22 13 | 48 (16%) | 244 |
0.334 (0.913) |
0.147 (0.755) |
0.238 (0.847) |
1 (1.00) |
1 (1.00) |
0.478 (0.962) |
0.603 (0.973) |
0.748 (1.00) |
0.786 (1.00) |
0.942 (1.00) |
1 (1.00) |
0.754 (1.00) |
0.483 (0.962) |
0.448 (0.957) |
0.222 (0.825) |
0.509 (0.966) |
0.748 (1.00) |
0.489 (0.962) |
0.892 (1.00) |
0.568 (0.973) |
0.565 (0.971) |
0.459 (0.957) |
0.777 (1.00) |
1 (1.00) |
0.973 (1.00) |
0.336 (0.914) |
0.836 (1.00) |
1 (1.00) |
0.422 (0.957) |
0.935 (1.00) |
0.229 (0.832) |
0.377 (0.938) |
1 (1.00) |
0.786 (1.00) |
0.659 (0.986) |
0.0375 (0.546) |
0.996 (1.00) |
0.464 (0.957) |
0.439 (0.957) |
0.687 (0.991) |
0.96 (1.00) |
0.33 (0.907) |
0.166 (0.768) |
0.243 (0.853) |
amp xq28 | 75 (26%) | 217 |
0.0335 (0.546) |
0.396 (0.947) |
0.127 (0.731) |
0.272 (0.864) |
0.448 (0.957) |
0.067 (0.663) |
0.276 (0.869) |
0.523 (0.969) |
0.58 (0.973) |
0.119 (0.717) |
0.789 (1.00) |
0.781 (1.00) |
0.101 (0.7) |
0.926 (1.00) |
0.431 (0.957) |
0.107 (0.706) |
0.523 (0.969) |
0.751 (1.00) |
0.425 (0.957) |
0.697 (0.992) |
0.73 (1.00) |
0.459 (0.957) |
0.356 (0.931) |
1 (1.00) |
0.323 (0.901) |
0.792 (1.00) |
0.429 (0.957) |
0.366 (0.937) |
0.923 (1.00) |
0.744 (1.00) |
0.49 (0.962) |
0.648 (0.984) |
1 (1.00) |
0.58 (0.973) |
0.796 (1.00) |
0.542 (0.97) |
0.0912 (0.699) |
0.542 (0.97) |
0.243 (0.853) |
0.555 (0.97) |
0.955 (1.00) |
0.425 (0.957) |
0.341 (0.918) |
0.7 (0.994) |
del 1p36 23 | 40 (14%) | 252 |
0.598 (0.973) |
0.0573 (0.624) |
0.562 (0.97) |
0.797 (1.00) |
0.0817 (0.687) |
0.00663 (0.509) |
0.271 (0.864) |
0.0174 (0.509) |
0.902 (1.00) |
0.904 (1.00) |
1 (1.00) |
0.623 (0.979) |
1 (1.00) |
0.871 (1.00) |
0.639 (0.981) |
0.876 (1.00) |
0.0174 (0.509) |
0.63 (0.979) |
0.366 (0.937) |
0.619 (0.978) |
0.376 (0.938) |
0.53 (0.97) |
0.342 (0.918) |
1 (1.00) |
0.769 (1.00) |
0.882 (1.00) |
0.401 (0.947) |
0.462 (0.957) |
0.444 (0.957) |
0.695 (0.992) |
0.543 (0.97) |
0.361 (0.934) |
0.799 (1.00) |
0.902 (1.00) |
0.285 (0.871) |
0.356 (0.931) |
0.31 (0.896) |
0.766 (1.00) |
0.353 (0.93) |
0.458 (0.957) |
0.0704 (0.682) |
0.0658 (0.661) |
0.519 (0.968) |
|
del 1p13 2 | 33 (11%) | 259 |
0.278 (0.871) |
0.87 (1.00) |
0.66 (0.986) |
0.398 (0.947) |
0.118 (0.715) |
0.766 (1.00) |
0.357 (0.931) |
0.696 (0.992) |
0.583 (0.973) |
0.759 (1.00) |
1 (1.00) |
0.874 (1.00) |
0.552 (0.97) |
0.653 (0.986) |
0.561 (0.97) |
0.696 (0.992) |
0.0477 (0.59) |
0.247 (0.855) |
0.222 (0.825) |
0.788 (1.00) |
1 (1.00) |
0.62 (0.979) |
0.563 (0.97) |
0.0835 (0.687) |
0.48 (0.962) |
0.08 (0.687) |
0.563 (0.97) |
0.0762 (0.687) |
0.906 (1.00) |
1 (1.00) |
0.64 (0.981) |
0.527 (0.969) |
0.583 (0.973) |
0.898 (1.00) |
0.0984 (0.699) |
0.0854 (0.692) |
0.548 (0.97) |
0.425 (0.957) |
1 (1.00) |
0.141 (0.74) |
0.923 (1.00) |
0.433 (0.957) |
||
del 2q22 1 | 65 (22%) | 227 |
0.571 (0.973) |
0.616 (0.977) |
0.425 (0.957) |
0.85 (1.00) |
1 (1.00) |
0.449 (0.957) |
0.497 (0.962) |
0.303 (0.895) |
0.623 (0.979) |
0.193 (0.795) |
0.593 (0.973) |
0.618 (0.978) |
0.518 (0.968) |
0.834 (1.00) |
0.242 (0.853) |
0.327 (0.907) |
0.303 (0.895) |
0.462 (0.957) |
0.23 (0.833) |
0.481 (0.962) |
0.459 (0.957) |
0.551 (0.97) |
0.639 (0.981) |
0.643 (0.981) |
0.975 (1.00) |
0.879 (1.00) |
0.698 (0.993) |
0.281 (0.871) |
0.0637 (0.654) |
0.804 (1.00) |
0.52 (0.968) |
0.259 (0.861) |
0.423 (0.957) |
0.623 (0.979) |
0.11 (0.709) |
0.844 (1.00) |
0.331 (0.907) |
0.405 (0.947) |
0.363 (0.937) |
0.0212 (0.511) |
0.225 (0.83) |
0.577 (0.973) |
0.551 (0.97) |
0.536 (0.97) |
del 2q37 1 | 128 (44%) | 164 |
0.666 (0.986) |
0.0158 (0.509) |
0.444 (0.957) |
0.514 (0.966) |
0.11 (0.708) |
0.0967 (0.699) |
1 (1.00) |
0.592 (0.973) |
0.452 (0.957) |
0.437 (0.957) |
0.501 (0.962) |
0.249 (0.855) |
0.858 (1.00) |
0.662 (0.986) |
0.986 (1.00) |
0.0167 (0.509) |
0.592 (0.973) |
0.112 (0.71) |
0.399 (0.947) |
0.372 (0.937) |
0.868 (1.00) |
0.56 (0.97) |
0.699 (0.994) |
1 (1.00) |
0.976 (1.00) |
0.184 (0.79) |
0.605 (0.974) |
0.845 (1.00) |
0.378 (0.938) |
0.951 (1.00) |
0.393 (0.946) |
0.301 (0.894) |
1 (1.00) |
0.452 (0.957) |
0.00348 (0.402) |
0.734 (1.00) |
0.864 (1.00) |
0.811 (1.00) |
0.767 (1.00) |
0.423 (0.957) |
0.96 (1.00) |
0.773 (1.00) |
0.0211 (0.511) |
0.686 (0.991) |
del 4q21 3 | 100 (34%) | 192 |
0.107 (0.706) |
0.861 (1.00) |
0.216 (0.821) |
0.009 (0.509) |
0.0886 (0.699) |
0.0179 (0.509) |
0.544 (0.97) |
0.63 (0.979) |
0.00882 (0.509) |
0.124 (0.723) |
1 (1.00) |
0.00928 (0.509) |
0.336 (0.914) |
0.463 (0.957) |
0.0185 (0.509) |
0.252 (0.858) |
0.63 (0.979) |
0.104 (0.705) |
0.798 (1.00) |
0.191 (0.794) |
0.833 (1.00) |
1 (1.00) |
0.256 (0.861) |
0.373 (0.937) |
0.583 (0.973) |
0.642 (0.981) |
0.381 (0.938) |
0.217 (0.821) |
0.304 (0.896) |
0.6 (0.973) |
0.195 (0.797) |
0.897 (1.00) |
0.472 (0.961) |
0.00882 (0.509) |
0.288 (0.874) |
0.722 (1.00) |
0.16 (0.764) |
0.769 (1.00) |
0.831 (1.00) |
0.236 (0.843) |
0.157 (0.764) |
0.109 (0.708) |
0.883 (1.00) |
0.41 (0.95) |
del 4q22 1 | 97 (33%) | 195 |
0.331 (0.907) |
0.756 (1.00) |
0.151 (0.761) |
0.109 (0.708) |
0.298 (0.885) |
0.0263 (0.521) |
0.686 (0.991) |
0.61 (0.976) |
0.0433 (0.576) |
0.219 (0.821) |
0.637 (0.981) |
0.0543 (0.607) |
0.845 (1.00) |
0.306 (0.896) |
0.0023 (0.373) |
0.177 (0.784) |
0.61 (0.976) |
0.418 (0.954) |
0.714 (1.00) |
0.207 (0.81) |
0.87 (1.00) |
0.543 (0.97) |
0.154 (0.761) |
0.392 (0.946) |
0.79 (1.00) |
0.678 (0.991) |
0.633 (0.98) |
0.329 (0.907) |
0.688 (0.991) |
0.544 (0.97) |
0.0986 (0.699) |
0.916 (1.00) |
0.265 (0.861) |
0.0433 (0.576) |
0.405 (0.947) |
0.72 (1.00) |
0.188 (0.791) |
0.545 (0.97) |
0.99 (1.00) |
0.76 (1.00) |
0.157 (0.764) |
0.28 (0.871) |
0.785 (1.00) |
0.609 (0.976) |
del 4q35 2 | 111 (38%) | 181 |
0.552 (0.97) |
0.257 (0.861) |
0.198 (0.8) |
0.312 (0.896) |
1 (1.00) |
0.0374 (0.546) |
0.844 (1.00) |
0.175 (0.783) |
0.319 (0.899) |
0.736 (1.00) |
0.253 (0.86) |
0.306 (0.896) |
0.854 (1.00) |
0.769 (1.00) |
0.0302 (0.539) |
0.281 (0.871) |
0.175 (0.783) |
0.551 (0.97) |
0.219 (0.821) |
0.43 (0.957) |
0.969 (1.00) |
0.56 (0.97) |
0.277 (0.869) |
0.0732 (0.687) |
0.74 (1.00) |
0.0653 (0.661) |
0.308 (0.896) |
0.656 (0.986) |
0.662 (0.986) |
0.838 (1.00) |
0.351 (0.927) |
0.351 (0.927) |
0.601 (0.973) |
0.319 (0.899) |
0.488 (0.962) |
0.392 (0.946) |
0.283 (0.871) |
0.458 (0.957) |
0.509 (0.966) |
0.574 (0.973) |
0.393 (0.946) |
0.315 (0.897) |
0.268 (0.861) |
0.551 (0.97) |
del 5q12 1 | 75 (26%) | 217 |
0.134 (0.734) |
0.911 (1.00) |
0.573 (0.973) |
0.347 (0.923) |
1 (1.00) |
0.482 (0.962) |
0.0761 (0.687) |
0.13 (0.732) |
0.0961 (0.699) |
0.775 (1.00) |
0.447 (0.957) |
0.0493 (0.594) |
0.16 (0.764) |
0.376 (0.938) |
0.544 (0.97) |
0.054 (0.607) |
0.13 (0.732) |
0.5 (0.962) |
0.402 (0.947) |
0.632 (0.979) |
0.205 (0.809) |
1 (1.00) |
0.123 (0.723) |
1 (1.00) |
0.481 (0.962) |
0.153 (0.761) |
0.178 (0.786) |
0.842 (1.00) |
0.0996 (0.699) |
0.944 (1.00) |
0.662 (0.986) |
0.612 (0.976) |
0.123 (0.723) |
0.0961 (0.699) |
0.784 (1.00) |
0.703 (0.996) |
0.204 (0.809) |
0.857 (1.00) |
0.643 (0.981) |
1 (1.00) |
0.0307 (0.539) |
0.544 (0.97) |
0.954 (1.00) |
0.158 (0.764) |
del 5q35 2 | 71 (24%) | 221 |
0.513 (0.966) |
0.557 (0.97) |
0.158 (0.764) |
0.709 (1.00) |
0.282 (0.871) |
0.347 (0.923) |
0.115 (0.71) |
0.367 (0.937) |
0.0304 (0.539) |
0.87 (1.00) |
1 (1.00) |
0.247 (0.855) |
0.539 (0.97) |
0.357 (0.931) |
0.143 (0.745) |
0.424 (0.957) |
0.367 (0.937) |
0.489 (0.962) |
0.924 (1.00) |
0.959 (1.00) |
0.174 (0.783) |
1 (1.00) |
0.0388 (0.548) |
1 (1.00) |
0.911 (1.00) |
0.163 (0.764) |
0.262 (0.861) |
0.607 (0.975) |
0.0523 (0.603) |
0.544 (0.97) |
0.512 (0.966) |
1 (1.00) |
0.13 (0.732) |
0.0304 (0.539) |
0.867 (1.00) |
0.186 (0.791) |
0.821 (1.00) |
0.787 (1.00) |
0.426 (0.957) |
1 (1.00) |
0.209 (0.811) |
0.282 (0.871) |
0.602 (0.973) |
0.39 (0.946) |
del 6p24 2 | 46 (16%) | 246 |
0.756 (1.00) |
0.834 (1.00) |
0.798 (1.00) |
0.276 (0.869) |
0.687 (0.991) |
0.133 (0.732) |
0.44 (0.957) |
0.394 (0.947) |
0.133 (0.732) |
0.505 (0.964) |
0.525 (0.969) |
0.249 (0.857) |
1 (1.00) |
0.0237 (0.511) |
0.853 (1.00) |
0.105 (0.705) |
0.394 (0.947) |
0.924 (1.00) |
1 (1.00) |
0.888 (1.00) |
0.0222 (0.511) |
1 (1.00) |
0.796 (1.00) |
0.574 (0.973) |
0.49 (0.962) |
0.463 (0.957) |
0.105 (0.705) |
0.622 (0.979) |
0.314 (0.896) |
0.808 (1.00) |
0.739 (1.00) |
0.276 (0.869) |
0.382 (0.938) |
0.133 (0.732) |
0.185 (0.791) |
0.506 (0.964) |
0.25 (0.857) |
0.386 (0.942) |
0.506 (0.964) |
0.733 (1.00) |
0.0376 (0.546) |
0.991 (1.00) |
0.833 (1.00) |
0.985 (1.00) |
del 6q26 | 100 (34%) | 192 |
0.13 (0.732) |
0.69 (0.991) |
0.766 (1.00) |
0.602 (0.973) |
1 (1.00) |
0.487 (0.962) |
0.688 (0.991) |
0.407 (0.947) |
0.37 (0.937) |
0.273 (0.866) |
0.342 (0.918) |
0.611 (0.976) |
0.848 (1.00) |
0.483 (0.962) |
0.0649 (0.661) |
0.118 (0.715) |
0.407 (0.947) |
0.69 (0.991) |
0.969 (1.00) |
0.357 (0.931) |
0.991 (1.00) |
0.536 (0.97) |
0.323 (0.901) |
0.329 (0.907) |
0.671 (0.988) |
0.428 (0.957) |
0.138 (0.739) |
0.555 (0.97) |
0.443 (0.957) |
0.948 (1.00) |
0.635 (0.981) |
0.289 (0.874) |
0.597 (0.973) |
0.37 (0.937) |
0.264 (0.861) |
0.854 (1.00) |
0.00108 (0.27) |
0.666 (0.986) |
0.0394 (0.552) |
0.783 (1.00) |
0.089 (0.699) |
0.0536 (0.607) |
0.634 (0.98) |
0.369 (0.937) |
del 7q34 | 60 (21%) | 232 |
0.122 (0.723) |
0.0846 (0.688) |
0.57 (0.973) |
0.218 (0.821) |
1 (1.00) |
0.68 (0.991) |
0.00302 (0.373) |
0.112 (0.71) |
0.021 (0.511) |
0.911 (1.00) |
0.603 (0.973) |
0.812 (1.00) |
0.189 (0.791) |
0.958 (1.00) |
0.718 (1.00) |
0.866 (1.00) |
0.112 (0.71) |
0.539 (0.97) |
0.249 (0.855) |
0.73 (1.00) |
0.0329 (0.546) |
0.583 (0.973) |
0.0792 (0.687) |
0.589 (0.973) |
0.742 (1.00) |
0.2 (0.803) |
0.753 (1.00) |
0.593 (0.973) |
0.1 (0.699) |
0.296 (0.885) |
0.826 (1.00) |
0.573 (0.973) |
0.215 (0.821) |
0.021 (0.511) |
0.366 (0.937) |
0.414 (0.952) |
0.786 (1.00) |
0.748 (1.00) |
0.746 (1.00) |
0.745 (1.00) |
0.591 (0.973) |
0.206 (0.81) |
0.084 (0.688) |
0.869 (1.00) |
del 8p23 3 | 103 (35%) | 189 |
0.0129 (0.509) |
0.31 (0.896) |
0.889 (1.00) |
0.611 (0.976) |
0.734 (1.00) |
0.89 (1.00) |
0.105 (0.705) |
0.529 (0.97) |
0.309 (0.896) |
0.858 (1.00) |
1 (1.00) |
0.956 (1.00) |
0.129 (0.732) |
0.899 (1.00) |
0.407 (0.947) |
0.216 (0.821) |
0.529 (0.97) |
0.322 (0.901) |
0.0338 (0.546) |
0.141 (0.74) |
0.267 (0.861) |
1 (1.00) |
0.469 (0.959) |
0.356 (0.931) |
0.894 (1.00) |
0.98 (1.00) |
0.18 (0.789) |
0.993 (1.00) |
0.645 (0.983) |
1 (1.00) |
0.549 (0.97) |
0.872 (1.00) |
0.152 (0.761) |
0.309 (0.896) |
0.554 (0.97) |
0.364 (0.937) |
0.384 (0.94) |
0.492 (0.962) |
0.819 (1.00) |
0.783 (1.00) |
0.136 (0.738) |
0.62 (0.979) |
0.275 (0.869) |
0.602 (0.973) |
del 8p23 1 | 96 (33%) | 196 |
0.021 (0.511) |
0.2 (0.803) |
0.968 (1.00) |
0.606 (0.975) |
0.726 (1.00) |
0.656 (0.986) |
0.221 (0.823) |
0.318 (0.899) |
0.243 (0.853) |
0.379 (0.938) |
0.813 (1.00) |
0.97 (1.00) |
0.0833 (0.687) |
0.749 (1.00) |
0.227 (0.831) |
0.0247 (0.511) |
0.318 (0.899) |
0.538 (0.97) |
0.123 (0.723) |
0.256 (0.861) |
0.257 (0.861) |
0.56 (0.97) |
0.501 (0.962) |
0.341 (0.918) |
0.838 (1.00) |
0.769 (1.00) |
0.213 (0.82) |
0.995 (1.00) |
0.971 (1.00) |
0.715 (1.00) |
0.635 (0.981) |
0.831 (1.00) |
0.1 (0.699) |
0.243 (0.853) |
0.465 (0.957) |
0.467 (0.958) |
0.876 (1.00) |
0.968 (1.00) |
0.845 (1.00) |
1 (1.00) |
0.13 (0.732) |
0.73 (1.00) |
0.177 (0.784) |
0.501 (0.962) |
del 11p15 1 | 101 (35%) | 191 |
0.728 (1.00) |
0.00382 (0.424) |
0.503 (0.964) |
0.488 (0.962) |
0.492 (0.962) |
0.0942 (0.699) |
0.42 (0.956) |
0.229 (0.832) |
0.23 (0.832) |
0.188 (0.791) |
0.647 (0.983) |
0.248 (0.855) |
0.138 (0.739) |
0.0512 (0.603) |
0.104 (0.705) |
0.53 (0.97) |
0.229 (0.832) |
0.86 (1.00) |
0.327 (0.907) |
0.566 (0.971) |
0.455 (0.957) |
0.551 (0.97) |
0.771 (1.00) |
0.329 (0.907) |
0.11 (0.709) |
0.0556 (0.615) |
0.538 (0.97) |
0.151 (0.761) |
0.869 (1.00) |
0.0135 (0.509) |
0.596 (0.973) |
0.0108 (0.509) |
0.474 (0.962) |
0.23 (0.832) |
0.453 (0.957) |
0.718 (1.00) |
0.754 (1.00) |
0.0984 (0.699) |
0.165 (0.766) |
1 (1.00) |
0.958 (1.00) |
0.383 (0.938) |
0.00274 (0.373) |
0.227 (0.831) |
del 11q23 3 | 161 (55%) | 131 |
0.724 (1.00) |
0.0177 (0.509) |
0.863 (1.00) |
0.872 (1.00) |
0.74 (1.00) |
0.0123 (0.509) |
0.245 (0.855) |
0.599 (0.973) |
0.771 (1.00) |
0.219 (0.821) |
0.185 (0.791) |
0.71 (1.00) |
0.59 (0.973) |
0.463 (0.957) |
0.759 (1.00) |
0.857 (1.00) |
0.599 (0.973) |
0.73 (1.00) |
0.03 (0.539) |
0.192 (0.795) |
0.181 (0.789) |
1 (1.00) |
0.683 (0.991) |
0.641 (0.981) |
0.173 (0.783) |
0.497 (0.962) |
0.824 (1.00) |
0.454 (0.957) |
0.719 (1.00) |
0.0372 (0.546) |
1 (1.00) |
0.0267 (0.524) |
0.0938 (0.699) |
0.771 (1.00) |
0.48 (0.962) |
0.733 (1.00) |
0.0373 (0.546) |
0.562 (0.97) |
0.959 (1.00) |
0.287 (0.874) |
0.661 (0.986) |
0.17 (0.775) |
0.0263 (0.521) |
0.0142 (0.509) |
del 11q25 | 159 (54%) | 133 |
0.624 (0.979) |
0.175 (0.783) |
0.782 (1.00) |
1 (1.00) |
0.738 (1.00) |
0.0177 (0.509) |
0.0828 (0.687) |
0.71 (1.00) |
0.993 (1.00) |
0.204 (0.809) |
0.074 (0.687) |
0.658 (0.986) |
0.374 (0.937) |
0.631 (0.979) |
0.68 (0.991) |
0.577 (0.973) |
0.71 (1.00) |
0.567 (0.972) |
0.0564 (0.62) |
0.39 (0.946) |
0.0576 (0.624) |
1 (1.00) |
0.837 (1.00) |
0.64 (0.981) |
0.295 (0.885) |
0.497 (0.962) |
0.824 (1.00) |
0.777 (1.00) |
0.511 (0.966) |
0.0372 (0.546) |
1 (1.00) |
0.0847 (0.688) |
0.0442 (0.581) |
0.993 (1.00) |
0.624 (0.979) |
1 (1.00) |
0.0176 (0.509) |
0.838 (1.00) |
0.372 (0.937) |
0.287 (0.874) |
0.807 (1.00) |
0.0605 (0.64) |
0.225 (0.83) |
0.0383 (0.546) |
del 13q14 2 | 117 (40%) | 175 |
0.124 (0.723) |
0.153 (0.761) |
0.00502 (0.463) |
0.066 (0.661) |
0.52 (0.968) |
0.00764 (0.509) |
0.439 (0.957) |
0.322 (0.901) |
0.0224 (0.511) |
0.0224 (0.511) |
0.645 (0.983) |
0.918 (1.00) |
0.36 (0.934) |
0.45 (0.957) |
0.00989 (0.509) |
0.0366 (0.546) |
0.322 (0.901) |
0.0126 (0.509) |
0.0361 (0.546) |
0.446 (0.957) |
0.676 (0.99) |
1 (1.00) |
0.905 (1.00) |
1 (1.00) |
0.0369 (0.546) |
0.953 (1.00) |
0.559 (0.97) |
0.0106 (0.509) |
0.442 (0.957) |
0.0394 (0.552) |
0.785 (1.00) |
0.784 (1.00) |
0.293 (0.881) |
0.0224 (0.511) |
0.626 (0.979) |
0.73 (1.00) |
0.0334 (0.546) |
0.746 (1.00) |
0.45 (0.957) |
0.047 (0.59) |
0.651 (0.986) |
0.0552 (0.612) |
0.118 (0.716) |
0.0157 (0.509) |
del 14q32 31 | 50 (17%) | 242 |
0.666 (0.986) |
0.0987 (0.699) |
0.682 (0.991) |
1 (1.00) |
0.116 (0.712) |
0.125 (0.727) |
0.129 (0.732) |
0.44 (0.957) |
0.283 (0.871) |
0.59 (0.973) |
0.758 (1.00) |
0.992 (1.00) |
0.0279 (0.534) |
0.718 (1.00) |
0.0107 (0.509) |
0.923 (1.00) |
0.44 (0.957) |
0.0601 (0.638) |
0.956 (1.00) |
0.0445 (0.581) |
0.4 (0.947) |
1 (1.00) |
0.753 (1.00) |
1 (1.00) |
0.0742 (0.687) |
0.374 (0.937) |
0.434 (0.957) |
0.279 (0.871) |
0.181 (0.789) |
0.526 (0.969) |
0.915 (1.00) |
0.109 (0.708) |
0.505 (0.964) |
0.283 (0.871) |
0.496 (0.962) |
0.812 (1.00) |
0.578 (0.973) |
0.386 (0.942) |
0.662 (0.986) |
1 (1.00) |
0.444 (0.957) |
0.106 (0.706) |
0.794 (1.00) |
|
del 15q21 1 | 68 (23%) | 224 |
0.637 (0.981) |
0.0149 (0.509) |
0.188 (0.791) |
0.156 (0.763) |
0.395 (0.947) |
0.0214 (0.511) |
0.821 (1.00) |
0.785 (1.00) |
0.45 (0.957) |
0.0313 (0.545) |
1 (1.00) |
0.814 (1.00) |
0.414 (0.952) |
0.123 (0.723) |
0.0125 (0.509) |
0.169 (0.772) |
0.785 (1.00) |
0.663 (0.986) |
0.715 (1.00) |
0.702 (0.996) |
0.441 (0.957) |
1 (1.00) |
0.553 (0.97) |
1 (1.00) |
0.87 (1.00) |
0.938 (1.00) |
0.0807 (0.687) |
0.353 (0.93) |
0.834 (1.00) |
0.856 (1.00) |
0.846 (1.00) |
0.0878 (0.699) |
0.639 (0.981) |
0.45 (0.957) |
0.375 (0.938) |
0.658 (0.986) |
0.742 (1.00) |
0.455 (0.957) |
0.509 (0.966) |
0.713 (1.00) |
0.733 (1.00) |
0.119 (0.717) |
0.0165 (0.509) |
0.17 (0.775) |
del 17p12 | 108 (37%) | 184 |
0.487 (0.962) |
0.0249 (0.511) |
0.826 (1.00) |
0.482 (0.962) |
1 (1.00) |
0.584 (0.973) |
0.318 (0.899) |
0.526 (0.969) |
0.938 (1.00) |
0.194 (0.797) |
0.645 (0.983) |
0.211 (0.811) |
0.138 (0.739) |
0.331 (0.907) |
0.0526 (0.603) |
0.696 (0.992) |
0.526 (0.969) |
0.0408 (0.558) |
0.434 (0.957) |
0.449 (0.957) |
0.681 (0.991) |
1 (1.00) |
0.405 (0.947) |
0.64 (0.981) |
0.787 (1.00) |
0.451 (0.957) |
0.657 (0.986) |
0.184 (0.79) |
0.0444 (0.581) |
0.617 (0.978) |
0.82 (1.00) |
0.584 (0.973) |
0.86 (1.00) |
0.938 (1.00) |
0.368 (0.937) |
0.489 (0.962) |
0.582 (0.973) |
0.303 (0.895) |
0.483 (0.962) |
1 (1.00) |
0.119 (0.717) |
0.657 (0.986) |
0.0316 (0.546) |
0.686 (0.991) |
del 17q25 3 | 51 (17%) | 241 |
0.817 (1.00) |
0.657 (0.986) |
1 (1.00) |
0.408 (0.947) |
0.651 (0.986) |
0.102 (0.7) |
1 (1.00) |
0.245 (0.855) |
0.757 (1.00) |
0.267 (0.861) |
1 (1.00) |
0.432 (0.957) |
0.309 (0.896) |
0.807 (1.00) |
0.272 (0.864) |
0.331 (0.907) |
0.245 (0.855) |
0.106 (0.706) |
0.373 (0.937) |
0.562 (0.97) |
0.809 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.912 (1.00) |
0.311 (0.896) |
0.417 (0.954) |
0.824 (1.00) |
0.592 (0.973) |
0.147 (0.755) |
0.808 (1.00) |
0.884 (1.00) |
1 (1.00) |
0.757 (1.00) |
0.242 (0.853) |
0.675 (0.99) |
0.8 (1.00) |
1 (1.00) |
0.173 (0.783) |
0.458 (0.957) |
0.958 (1.00) |
0.676 (0.99) |
0.499 (0.962) |
0.41 (0.95) |
del 19p13 3 | 103 (35%) | 189 |
0.00282 (0.373) |
0.608 (0.976) |
0.559 (0.97) |
0.864 (1.00) |
0.723 (1.00) |
0.558 (0.97) |
0.553 (0.97) |
0.382 (0.938) |
0.84 (1.00) |
0.159 (0.764) |
0.0656 (0.661) |
0.536 (0.97) |
0.122 (0.723) |
0.111 (0.709) |
0.124 (0.726) |
0.625 (0.979) |
0.382 (0.938) |
0.991 (1.00) |
0.589 (0.973) |
0.41 (0.95) |
0.919 (1.00) |
1 (1.00) |
0.952 (1.00) |
0.653 (0.986) |
0.961 (1.00) |
0.0983 (0.699) |
0.382 (0.938) |
0.72 (1.00) |
0.139 (0.739) |
0.666 (0.986) |
0.909 (1.00) |
0.543 (0.97) |
0.372 (0.937) |
0.84 (1.00) |
0.598 (0.973) |
0.467 (0.958) |
0.463 (0.957) |
0.907 (1.00) |
0.0801 (0.687) |
1 (1.00) |
0.082 (0.687) |
0.784 (1.00) |
0.51 (0.966) |
0.994 (1.00) |
del 19q13 33 | 37 (13%) | 255 |
0.496 (0.962) |
0.168 (0.77) |
0.983 (1.00) |
1 (1.00) |
0.615 (0.977) |
0.0721 (0.687) |
1 (1.00) |
0.401 (0.947) |
0.757 (1.00) |
0.47 (0.96) |
0.476 (0.962) |
0.527 (0.969) |
1 (1.00) |
0.207 (0.81) |
0.113 (0.71) |
0.83 (1.00) |
0.401 (0.947) |
0.982 (1.00) |
0.0966 (0.699) |
0.234 (0.843) |
0.131 (0.732) |
1 (1.00) |
0.858 (1.00) |
0.58 (0.973) |
0.736 (1.00) |
0.331 (0.907) |
0.875 (1.00) |
0.377 (0.938) |
0.148 (0.757) |
0.695 (0.992) |
0.914 (1.00) |
0.209 (0.811) |
1 (1.00) |
0.757 (1.00) |
0.772 (1.00) |
1 (1.00) |
0.528 (0.97) |
0.666 (0.986) |
0.882 (1.00) |
0.458 (0.957) |
0.659 (0.986) |
0.957 (1.00) |
0.176 (0.783) |
0.255 (0.861) |
del 20p12 1 | 35 (12%) | 257 |
0.0946 (0.699) |
0.284 (0.871) |
0.439 (0.957) |
0.809 (1.00) |
1 (1.00) |
0.781 (1.00) |
1 (1.00) |
0.0935 (0.699) |
0.539 (0.97) |
0.618 (0.978) |
1 (1.00) |
0.247 (0.855) |
0.061 (0.643) |
0.594 (0.973) |
0.99 (1.00) |
0.974 (1.00) |
0.0935 (0.699) |
0.0881 (0.699) |
0.932 (1.00) |
0.665 (0.986) |
0.956 (1.00) |
0.298 (0.885) |
0.313 (0.896) |
0.415 (0.952) |
0.631 (0.979) |
0.885 (1.00) |
0.728 (1.00) |
0.483 (0.962) |
0.722 (1.00) |
0.512 (0.966) |
0.359 (0.932) |
0.835 (1.00) |
1 (1.00) |
0.539 (0.97) |
0.343 (0.919) |
0.784 (1.00) |
0.654 (0.986) |
0.291 (0.879) |
0.746 (1.00) |
0.713 (1.00) |
0.248 (0.855) |
0.418 (0.954) |
0.746 (1.00) |
|
del 21q11 2 | 58 (20%) | 234 |
0.0426 (0.573) |
0.162 (0.764) |
0.0461 (0.588) |
0.218 (0.821) |
0.69 (0.991) |
0.73 (1.00) |
0.811 (1.00) |
0.562 (0.97) |
0.0627 (0.654) |
0.32 (0.9) |
0.0516 (0.603) |
0.0761 (0.687) |
0.655 (0.986) |
0.139 (0.739) |
0.0349 (0.546) |
0.562 (0.97) |
0.0365 (0.546) |
0.0244 (0.511) |
0.872 (1.00) |
0.0125 (0.509) |
0.459 (0.957) |
0.0325 (0.546) |
0.313 (0.896) |
0.0318 (0.546) |
0.311 (0.896) |
0.819 (1.00) |
0.0449 (0.582) |
0.162 (0.764) |
0.777 (1.00) |
0.0719 (0.687) |
0.963 (1.00) |
0.835 (1.00) |
0.0627 (0.654) |
0.179 (0.787) |
0.667 (0.986) |
0.182 (0.789) |
0.441 (0.957) |
0.408 (0.947) |
0.329 (0.907) |
0.0325 (0.546) |
0.141 (0.74) |
0.0447 (0.581) |
||
del 22q13 32 | 87 (30%) | 205 |
0.199 (0.803) |
0.274 (0.868) |
0.359 (0.932) |
0.298 (0.885) |
0.492 (0.962) |
0.302 (0.895) |
0.21 (0.811) |
0.549 (0.97) |
0.896 (1.00) |
0.743 (1.00) |
0.805 (1.00) |
0.692 (0.991) |
0.692 (0.991) |
0.415 (0.952) |
0.574 (0.973) |
0.131 (0.732) |
0.549 (0.97) |
0.502 (0.962) |
0.149 (0.757) |
0.176 (0.783) |
0.797 (1.00) |
0.258 (0.861) |
0.164 (0.766) |
1 (1.00) |
0.0104 (0.509) |
0.142 (0.744) |
0.546 (0.97) |
0.0246 (0.511) |
0.671 (0.988) |
0.884 (1.00) |
0.961 (1.00) |
0.237 (0.847) |
0.155 (0.762) |
0.896 (1.00) |
0.217 (0.821) |
0.715 (1.00) |
0.871 (1.00) |
0.967 (1.00) |
0.137 (0.739) |
0.258 (0.861) |
0.651 (0.986) |
0.588 (0.973) |
0.305 (0.896) |
0.18 (0.789) |
del xp11 3 | 71 (24%) | 221 |
0.544 (0.97) |
0.167 (0.77) |
0.841 (1.00) |
0.343 (0.919) |
0.687 (0.991) |
0.0871 (0.699) |
0.115 (0.71) |
0.522 (0.969) |
0.854 (1.00) |
0.0956 (0.699) |
0.0726 (0.687) |
0.748 (1.00) |
1 (1.00) |
0.681 (0.991) |
0.499 (0.962) |
0.171 (0.778) |
0.522 (0.969) |
0.392 (0.946) |
0.359 (0.933) |
0.806 (1.00) |
0.438 (0.957) |
0.284 (0.871) |
0.224 (0.828) |
1 (1.00) |
0.336 (0.914) |
0.751 (1.00) |
0.115 (0.71) |
0.0886 (0.699) |
0.605 (0.974) |
0.632 (0.979) |
0.225 (0.83) |
0.232 (0.837) |
1 (1.00) |
0.854 (1.00) |
0.93 (1.00) |
0.102 (0.7) |
0.0714 (0.687) |
0.103 (0.703) |
0.595 (0.973) |
0.113 (0.71) |
0.225 (0.83) |
0.959 (1.00) |
0.138 (0.739) |
0.49 (0.962) |
del xq21 33 | 59 (20%) | 233 |
0.0224 (0.511) |
0.356 (0.931) |
0.83 (1.00) |
0.556 (0.97) |
0.372 (0.937) |
0.181 (0.789) |
0.157 (0.764) |
0.763 (1.00) |
0.596 (0.973) |
0.175 (0.783) |
0.416 (0.953) |
0.204 (0.809) |
0.117 (0.715) |
0.927 (1.00) |
0.502 (0.962) |
0.577 (0.973) |
0.763 (1.00) |
0.675 (0.99) |
0.623 (0.979) |
0.996 (1.00) |
0.369 (0.937) |
0.188 (0.791) |
0.227 (0.831) |
1 (1.00) |
0.16 (0.764) |
0.594 (0.973) |
0.395 (0.947) |
0.0245 (0.511) |
0.921 (1.00) |
0.6 (0.973) |
0.0742 (0.687) |
0.0571 (0.624) |
0.83 (1.00) |
0.596 (0.973) |
0.827 (1.00) |
0.041 (0.558) |
0.659 (0.986) |
0.847 (1.00) |
0.927 (1.00) |
0.186 (0.791) |
0.635 (0.981) |
0.986 (1.00) |
0.312 (0.896) |
0.859 (1.00) |
P value = 9.79e-05 (Wilcoxon-test), Q value = 0.055
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 288 | 48.0 (13.8) |
AMP PEAK 16(11Q22.1) MUTATED | 46 | 40.7 (12.7) |
AMP PEAK 16(11Q22.1) WILD-TYPE | 242 | 49.4 (13.6) |
P value = 0.000105 (Wilcoxon-test), Q value = 0.055
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 292 | 48.1 (13.8) |
AMP PEAK 16(11Q22.1) MUTATED | 47 | 40.9 (12.6) |
AMP PEAK 16(11Q22.1) WILD-TYPE | 245 | 49.5 (13.6) |
P value = 0.00012 (Fisher's exact test), Q value = 0.055
nPatients | ADENOSQUAMOUS | CERVICAL SQUAMOUS CELL CARCINOMA | ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE | ENDOCERVICAL TYPE OF ADENOCARCINOMA | ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX | MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE |
---|---|---|---|---|---|---|
ALL | 5 | 241 | 6 | 22 | 3 | 15 |
DEL PEAK 5(3P14.2) MUTATED | 2 | 123 | 1 | 2 | 1 | 3 |
DEL PEAK 5(3P14.2) WILD-TYPE | 3 | 118 | 5 | 20 | 2 | 12 |
P value = 0.00039 (Fisher's exact test), Q value = 0.15
nPatients | CURRENT REFORMED SMOKER FOR < OR = 15 YEARS | CURRENT REFORMED SMOKER FOR > 15 YEARS | CURRENT REFORMED SMOKER, DURATION NOT SPECIFIED | CURRENT SMOKER | LIFELONG NON-SMOKER |
---|---|---|---|---|---|
ALL | 37 | 9 | 3 | 62 | 142 |
DEL PEAK 5(3P14.2) MUTATED | 16 | 2 | 3 | 40 | 52 |
DEL PEAK 5(3P14.2) WILD-TYPE | 21 | 7 | 0 | 22 | 90 |
P value = 0.000738 (Wilcoxon-test), Q value = 0.23
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 288 | 48.0 (13.8) |
DEL PEAK 16(10Q23.31) MUTATED | 85 | 52.2 (14.6) |
DEL PEAK 16(10Q23.31) WILD-TYPE | 203 | 46.3 (13.2) |
P value = 0.00045 (Fisher's exact test), Q value = 0.16
nPatients | ADENOSQUAMOUS | CERVICAL SQUAMOUS CELL CARCINOMA | ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE | ENDOCERVICAL TYPE OF ADENOCARCINOMA | ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX | MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE |
---|---|---|---|---|---|---|
ALL | 5 | 241 | 6 | 22 | 3 | 15 |
DEL PEAK 20(13Q12.11) MUTATED | 2 | 92 | 0 | 3 | 0 | 0 |
DEL PEAK 20(13Q12.11) WILD-TYPE | 3 | 149 | 6 | 19 | 3 | 15 |
P value = 2e-05 (Fisher's exact test), Q value = 0.028
nPatients | ADENOSQUAMOUS | CERVICAL SQUAMOUS CELL CARCINOMA | ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE | ENDOCERVICAL TYPE OF ADENOCARCINOMA | ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX | MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE |
---|---|---|---|---|---|---|
ALL | 5 | 241 | 6 | 22 | 3 | 15 |
DEL PEAK 24(16Q11.2) MUTATED | 0 | 32 | 5 | 10 | 1 | 5 |
DEL PEAK 24(16Q11.2) WILD-TYPE | 5 | 209 | 1 | 12 | 2 | 10 |
P value = 5e-05 (Fisher's exact test), Q value = 0.046
nPatients | ADENOSQUAMOUS | CERVICAL SQUAMOUS CELL CARCINOMA | ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE | ENDOCERVICAL TYPE OF ADENOCARCINOMA | ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX | MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE |
---|---|---|---|---|---|---|
ALL | 5 | 241 | 6 | 22 | 3 | 15 |
DEL PEAK 25(16Q23.1) MUTATED | 0 | 34 | 4 | 10 | 2 | 5 |
DEL PEAK 25(16Q23.1) WILD-TYPE | 5 | 207 | 2 | 12 | 1 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 0.028
nPatients | ADENOSQUAMOUS | CERVICAL SQUAMOUS CELL CARCINOMA | ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE | ENDOCERVICAL TYPE OF ADENOCARCINOMA | ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX | MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE |
---|---|---|---|---|---|---|
ALL | 5 | 241 | 6 | 22 | 3 | 15 |
DEL PEAK 28(18Q21.2) MUTATED | 0 | 55 | 1 | 14 | 2 | 10 |
DEL PEAK 28(18Q21.2) WILD-TYPE | 5 | 186 | 5 | 8 | 1 | 5 |
-
Copy number data file = all_lesions.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/CESC-TP/15082576/transformed.cor.cli.txt
-
Clinical data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/CESC-TP/15076797/CESC-TP.merged_data.txt
-
Number of patients = 292
-
Number of significantly focal cnvs = 63
-
Number of selected clinical features = 44
-
Exclude genes that fewer than K tumors have mutations, K = 3
For survival clinical features, the Kaplan-Meier survival curves of tumors with and without gene mutations were plotted and the statistical significance P values were estimated by logrank test (Bland and Altman 2004) using the 'survdiff' function in R
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.