This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 82 arm-level events and 10 molecular subtypes across 295 patients, 213 significant findings detected with P value < 0.05 and Q value < 0.25.
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1p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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1q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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2q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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3p gain cnv correlated to 'RPPA_CHIERARCHICAL'.
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3q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4q gain cnv correlated to 'RPPA_CNMF'.
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5p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5q gain cnv correlated to 'CN_CNMF'.
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6p gain cnv correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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7p gain cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
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7q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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8p gain cnv correlated to 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8q gain cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9p gain cnv correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9q gain cnv correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11p gain cnv correlated to 'MIRSEQ_CHIERARCHICAL'.
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11q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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12p gain cnv correlated to 'MRNASEQ_CNMF'.
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12q gain cnv correlated to 'MRNASEQ_CNMF'.
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13q gain cnv correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.
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14q gain cnv correlated to 'CN_CNMF'.
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16p gain cnv correlated to 'CN_CNMF'.
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17p gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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17q gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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18p gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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18q gain cnv correlated to 'MRNASEQ_CNMF'.
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19p gain cnv correlated to 'CN_CNMF'.
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19q gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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20p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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20q gain cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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21q gain cnv correlated to 'MRNASEQ_CNMF'.
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22q gain cnv correlated to 'MRNASEQ_CNMF'.
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xp gain cnv correlated to 'CN_CNMF'.
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xq gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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1p loss cnv correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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1q loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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2q loss cnv correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
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3p loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3q loss cnv correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
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4p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4q loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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5q loss cnv correlated to 'CN_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6p loss cnv correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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6q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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7p loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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8p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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8q loss cnv correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9p loss cnv correlated to 'CN_CNMF' and 'RPPA_CNMF'.
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9q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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10p loss cnv correlated to 'CN_CNMF'.
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10q loss cnv correlated to 'CN_CNMF'.
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11p loss cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
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11q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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12p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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12q loss cnv correlated to 'METHLYATION_CNMF'.
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13q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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14q loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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16p loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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16q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17p loss cnv correlated to 'CN_CNMF'.
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17q loss cnv correlated to 'METHLYATION_CNMF' and 'RPPA_CNMF'.
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18p loss cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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18q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19q loss cnv correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20p loss cnv correlated to 'MRNASEQ_CNMF'.
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21q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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22q loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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xp loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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xq loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
3q gain | 175 (59%) | 120 |
2e-05 (0.00137) |
4e-05 (0.00234) |
0.805 (0.895) |
0.316 (0.559) |
0.00104 (0.0164) |
2e-05 (0.00137) |
0.355 (0.592) |
0.00036 (0.00895) |
0.00313 (0.0333) |
0.00018 (0.00586) |
5p gain | 113 (38%) | 182 |
1e-05 (0.00117) |
0.0194 (0.115) |
0.56 (0.774) |
0.838 (0.915) |
0.0363 (0.157) |
0.0144 (0.097) |
0.0348 (0.154) |
0.00816 (0.0666) |
0.498 (0.721) |
0.0294 (0.141) |
9q gain | 47 (16%) | 248 |
0.662 (0.83) |
2e-05 (0.00137) |
0.0323 (0.149) |
0.556 (0.773) |
0.0105 (0.0779) |
0.00013 (0.00508) |
0.0243 (0.13) |
0.00289 (0.0316) |
0.291 (0.529) |
0.00047 (0.0104) |
3p loss | 82 (28%) | 213 |
0.603 (0.797) |
0.00023 (0.0065) |
0.652 (0.823) |
0.0575 (0.208) |
0.0302 (0.141) |
0.00053 (0.0111) |
0.0271 (0.138) |
0.00345 (0.0354) |
0.00226 (0.0269) |
0.00092 (0.0157) |
8q loss | 24 (8%) | 271 |
0.127 (0.34) |
8e-05 (0.00386) |
0.7 (0.842) |
0.0427 (0.175) |
0.00015 (0.00559) |
8e-05 (0.00386) |
0.0177 (0.11) |
0.0003 (0.0082) |
0.465 (0.696) |
0.00121 (0.018) |
19p loss | 60 (20%) | 235 |
1e-05 (0.00117) |
0.00045 (0.0102) |
0.851 (0.926) |
0.277 (0.513) |
0.0015 (0.0198) |
0.00266 (0.03) |
0.0298 (0.141) |
0.00012 (0.00492) |
0.051 (0.193) |
0.0147 (0.0983) |
1p gain | 90 (31%) | 205 |
0.00862 (0.068) |
0.00716 (0.0605) |
0.713 (0.85) |
0.745 (0.868) |
0.00033 (0.00873) |
0.00145 (0.0198) |
0.418 (0.653) |
4e-05 (0.00234) |
0.329 (0.571) |
0.013 (0.0908) |
16q loss | 44 (15%) | 251 |
0.141 (0.36) |
0.0033 (0.0343) |
0.438 (0.666) |
0.105 (0.302) |
0.00178 (0.0226) |
0.00134 (0.0196) |
0.00938 (0.0726) |
0.00113 (0.0172) |
0.0893 (0.278) |
0.0139 (0.0947) |
21q loss | 49 (17%) | 246 |
2e-05 (0.00137) |
0.0477 (0.185) |
0.603 (0.797) |
0.0233 (0.126) |
0.0184 (0.113) |
0.00407 (0.0408) |
0.303 (0.543) |
0.0264 (0.137) |
0.528 (0.747) |
0.774 (0.885) |
1q gain | 140 (47%) | 155 |
0.0002 (0.00586) |
0.272 (0.509) |
0.464 (0.695) |
0.382 (0.621) |
0.00483 (0.0447) |
0.00712 (0.0605) |
0.486 (0.711) |
0.00408 (0.0408) |
0.156 (0.383) |
0.00993 (0.0754) |
2p gain | 64 (22%) | 231 |
1e-05 (0.00117) |
0.00982 (0.0753) |
0.109 (0.304) |
0.119 (0.327) |
0.015 (0.0983) |
0.0395 (0.167) |
0.168 (0.397) |
0.00084 (0.0153) |
0.18 (0.417) |
0.389 (0.627) |
8q gain | 91 (31%) | 204 |
0.273 (0.509) |
0.0105 (0.0779) |
0.619 (0.807) |
0.497 (0.72) |
0.0175 (0.11) |
0.00109 (0.0169) |
0.165 (0.393) |
0.00691 (0.0596) |
0.616 (0.805) |
0.00019 (0.00586) |
9p gain | 49 (17%) | 246 |
0.644 (0.819) |
0.0469 (0.183) |
0.0334 (0.151) |
0.0776 (0.255) |
0.331 (0.572) |
0.0109 (0.079) |
0.331 (0.572) |
0.0172 (0.109) |
0.788 (0.887) |
0.0282 (0.14) |
4p loss | 131 (44%) | 164 |
1e-05 (0.00117) |
0.0818 (0.263) |
0.846 (0.922) |
1 (1.00) |
0.00416 (0.0411) |
0.00195 (0.0235) |
0.393 (0.627) |
0.00071 (0.0135) |
1 (1.00) |
0.00042 (0.0101) |
8p loss | 82 (28%) | 213 |
0.0001 (0.00432) |
0.109 (0.304) |
0.951 (0.977) |
0.221 (0.45) |
0.0195 (0.115) |
0.305 (0.543) |
0.019 (0.115) |
0.0426 (0.175) |
0.0111 (0.0796) |
0.0694 (0.238) |
13q loss | 80 (27%) | 215 |
0.00092 (0.0157) |
0.0306 (0.142) |
0.785 (0.887) |
0.12 (0.328) |
0.0185 (0.113) |
0.0448 (0.179) |
0.101 (0.294) |
0.00302 (0.0326) |
0.634 (0.812) |
0.108 (0.304) |
18q loss | 73 (25%) | 222 |
0.616 (0.805) |
0.00071 (0.0135) |
0.765 (0.877) |
0.206 (0.442) |
2e-05 (0.00137) |
0.00096 (0.0157) |
0.084 (0.269) |
0.00019 (0.00586) |
0.0785 (0.256) |
0.0195 (0.115) |
2q gain | 37 (13%) | 258 |
0.0001 (0.00432) |
0.164 (0.392) |
0.614 (0.805) |
0.313 (0.555) |
0.0203 (0.116) |
0.0047 (0.0443) |
0.16 (0.39) |
0.00267 (0.03) |
0.158 (0.386) |
0.664 (0.83) |
6p gain | 52 (18%) | 243 |
0.121 (0.329) |
0.0205 (0.117) |
0.385 (0.623) |
0.00619 (0.0558) |
0.0255 (0.134) |
0.0707 (0.241) |
0.543 (0.759) |
0.0368 (0.159) |
0.306 (0.544) |
0.0956 (0.286) |
7q gain | 37 (13%) | 258 |
0.0471 (0.183) |
0.00634 (0.0559) |
0.58 (0.791) |
0.137 (0.353) |
0.654 (0.823) |
0.234 (0.469) |
0.00095 (0.0157) |
0.192 (0.433) |
0.0104 (0.0779) |
0.0618 (0.216) |
11q gain | 8 (3%) | 287 |
0.0178 (0.11) |
0.691 (0.84) |
0.889 (0.943) |
0.666 (0.83) |
0.0483 (0.186) |
0.0016 (0.0208) |
0.201 (0.439) |
0.0234 (0.126) |
0.266 (0.506) |
0.576 (0.788) |
6q loss | 74 (25%) | 221 |
0.00456 (0.0438) |
0.00828 (0.0666) |
0.488 (0.713) |
0.603 (0.797) |
0.182 (0.42) |
0.0299 (0.141) |
0.207 (0.442) |
0.0335 (0.151) |
0.242 (0.481) |
0.162 (0.392) |
xp loss | 63 (21%) | 232 |
0.00459 (0.0438) |
0.00289 (0.0316) |
0.636 (0.812) |
0.82 (0.902) |
0.612 (0.805) |
0.891 (0.943) |
0.0254 (0.134) |
0.269 (0.506) |
0.0203 (0.116) |
0.263 (0.506) |
7p gain | 38 (13%) | 257 |
0.212 (0.444) |
0.00321 (0.0337) |
0.232 (0.466) |
0.212 (0.444) |
0.0283 (0.14) |
0.407 (0.642) |
0.00052 (0.0111) |
0.0964 (0.287) |
0.0586 (0.209) |
0.135 (0.353) |
8p gain | 53 (18%) | 242 |
0.779 (0.887) |
0.22 (0.45) |
0.634 (0.812) |
0.526 (0.745) |
0.0227 (0.124) |
0.0728 (0.246) |
0.719 (0.851) |
0.0273 (0.138) |
0.94 (0.972) |
0.0287 (0.141) |
20p gain | 100 (34%) | 195 |
0.00066 (0.0132) |
0.00485 (0.0447) |
0.977 (0.992) |
0.0073 (0.0605) |
0.0905 (0.278) |
0.0648 (0.226) |
0.0511 (0.193) |
0.102 (0.294) |
0.661 (0.83) |
0.597 (0.797) |
20q gain | 115 (39%) | 180 |
0.00446 (0.0435) |
0.146 (0.372) |
0.386 (0.625) |
0.00256 (0.0296) |
0.416 (0.65) |
0.0558 (0.203) |
0.464 (0.695) |
0.034 (0.152) |
0.808 (0.895) |
0.344 (0.581) |
3q loss | 14 (5%) | 281 |
0.302 (0.543) |
0.0385 (0.165) |
0.707 (0.845) |
0.0284 (0.14) |
0.0214 (0.12) |
0.428 (0.66) |
0.0738 (0.247) |
0.373 (0.61) |
0.259 (0.501) |
0.149 (0.372) |
5q loss | 51 (17%) | 244 |
0.00191 (0.0234) |
0.719 (0.851) |
0.627 (0.808) |
0.446 (0.675) |
0.394 (0.628) |
0.873 (0.937) |
0.0292 (0.141) |
0.266 (0.506) |
0.428 (0.66) |
0.0447 (0.179) |
9q loss | 51 (17%) | 244 |
0.00018 (0.00586) |
0.0435 (0.176) |
0.104 (0.299) |
0.494 (0.719) |
0.0904 (0.278) |
0.0674 (0.233) |
0.47 (0.696) |
0.438 (0.666) |
0.00191 (0.0234) |
0.176 (0.41) |
11p loss | 100 (34%) | 195 |
0.00144 (0.0198) |
0.304 (0.543) |
0.0738 (0.247) |
0.0266 (0.137) |
0.0324 (0.149) |
0.0854 (0.271) |
0.635 (0.812) |
0.0613 (0.216) |
0.948 (0.977) |
0.218 (0.45) |
11q loss | 115 (39%) | 180 |
1e-05 (0.00117) |
0.403 (0.639) |
0.28 (0.516) |
0.291 (0.529) |
0.0347 (0.154) |
0.0898 (0.278) |
0.722 (0.852) |
0.00728 (0.0605) |
0.807 (0.895) |
0.468 (0.696) |
12p loss | 40 (14%) | 255 |
0.0227 (0.124) |
0.0141 (0.0953) |
0.268 (0.506) |
0.00063 (0.0129) |
0.0616 (0.216) |
0.483 (0.709) |
0.271 (0.507) |
0.8 (0.895) |
0.304 (0.543) |
0.205 (0.442) |
16p loss | 34 (12%) | 261 |
0.102 (0.294) |
0.0326 (0.149) |
0.19 (0.433) |
0.39 (0.627) |
0.0274 (0.138) |
0.192 (0.433) |
0.411 (0.648) |
0.0108 (0.0789) |
0.0553 (0.202) |
0.2 (0.439) |
18p loss | 55 (19%) | 240 |
0.393 (0.627) |
0.078 (0.255) |
1 (1.00) |
0.207 (0.442) |
0.0115 (0.0822) |
0.0393 (0.167) |
0.421 (0.655) |
0.0355 (0.155) |
0.304 (0.543) |
0.149 (0.372) |
13q gain | 24 (8%) | 271 |
0.964 (0.982) |
0.467 (0.696) |
0.228 (0.46) |
0.692 (0.84) |
0.101 (0.294) |
0.0433 (0.176) |
0.00551 (0.0502) |
0.0672 (0.233) |
0.0984 (0.289) |
0.109 (0.304) |
17p gain | 22 (7%) | 273 |
0.00088 (0.0157) |
8e-05 (0.00386) |
0.887 (0.943) |
0.973 (0.99) |
0.0802 (0.259) |
0.337 (0.576) |
0.247 (0.488) |
0.652 (0.823) |
0.0772 (0.255) |
0.504 (0.727) |
17q gain | 42 (14%) | 253 |
0.0149 (0.0983) |
0.00884 (0.069) |
0.089 (0.278) |
0.0587 (0.209) |
0.192 (0.433) |
0.391 (0.627) |
0.162 (0.392) |
0.809 (0.895) |
0.268 (0.506) |
0.784 (0.887) |
18p gain | 49 (17%) | 246 |
0.0353 (0.155) |
0.36 (0.596) |
0.64 (0.815) |
0.763 (0.876) |
0.0413 (0.172) |
0.164 (0.392) |
0.922 (0.96) |
0.289 (0.529) |
0.787 (0.887) |
0.689 (0.84) |
19q gain | 72 (24%) | 223 |
1e-05 (0.00117) |
0.164 (0.392) |
0.757 (0.876) |
0.784 (0.887) |
0.126 (0.337) |
0.0432 (0.176) |
0.682 (0.84) |
0.0954 (0.286) |
0.819 (0.902) |
0.8 (0.895) |
xq gain | 42 (14%) | 253 |
0.0214 (0.12) |
0.034 (0.152) |
0.138 (0.354) |
0.432 (0.663) |
0.319 (0.562) |
0.228 (0.46) |
0.263 (0.506) |
0.2 (0.439) |
0.302 (0.543) |
0.275 (0.512) |
1p loss | 13 (4%) | 282 |
0.0551 (0.202) |
0.0706 (0.241) |
0.766 (0.878) |
0.401 (0.637) |
0.00035 (0.00895) |
0.0186 (0.113) |
0.135 (0.353) |
0.203 (0.441) |
0.448 (0.677) |
0.673 (0.833) |
1q loss | 9 (3%) | 286 |
0.0197 (0.116) |
0.25 (0.49) |
0.573 (0.786) |
0.682 (0.84) |
0.0411 (0.172) |
0.155 (0.381) |
0.0902 (0.278) |
0.436 (0.666) |
0.474 (0.701) |
0.741 (0.867) |
2q loss | 35 (12%) | 260 |
0.803 (0.895) |
0.329 (0.571) |
0.855 (0.928) |
0.437 (0.666) |
0.00836 (0.0666) |
0.0502 (0.191) |
0.147 (0.372) |
0.0221 (0.123) |
0.861 (0.933) |
0.204 (0.441) |
4q loss | 93 (32%) | 202 |
1e-05 (0.00117) |
0.487 (0.711) |
0.828 (0.908) |
0.871 (0.937) |
0.0952 (0.286) |
0.0136 (0.0936) |
0.961 (0.982) |
0.0516 (0.194) |
0.0553 (0.202) |
0.668 (0.83) |
6p loss | 47 (16%) | 248 |
0.15 (0.372) |
0.039 (0.167) |
0.959 (0.982) |
0.278 (0.513) |
0.276 (0.512) |
0.029 (0.141) |
0.445 (0.675) |
0.121 (0.329) |
0.895 (0.943) |
0.123 (0.331) |
7p loss | 26 (9%) | 269 |
0.0458 (0.181) |
0.26 (0.503) |
0.665 (0.83) |
0.0941 (0.285) |
0.0409 (0.172) |
0.251 (0.49) |
0.219 (0.45) |
0.826 (0.908) |
0.553 (0.771) |
0.0545 (0.202) |
9p loss | 54 (18%) | 241 |
0.00149 (0.0198) |
0.693 (0.84) |
0.03 (0.141) |
0.478 (0.702) |
0.509 (0.728) |
0.591 (0.797) |
0.927 (0.963) |
0.952 (0.977) |
0.0529 (0.198) |
0.799 (0.895) |
14q loss | 35 (12%) | 260 |
0.00102 (0.0164) |
0.0802 (0.259) |
0.405 (0.642) |
0.0898 (0.278) |
0.0912 (0.278) |
0.137 (0.353) |
0.85 (0.926) |
0.0984 (0.289) |
0.0151 (0.0985) |
0.625 (0.808) |
17q loss | 37 (13%) | 258 |
0.173 (0.404) |
0.0461 (0.181) |
0.0131 (0.0911) |
0.352 (0.59) |
0.268 (0.506) |
0.13 (0.345) |
0.0502 (0.191) |
0.333 (0.573) |
0.57 (0.784) |
0.189 (0.433) |
22q loss | 71 (24%) | 224 |
0.00235 (0.0275) |
0.73 (0.859) |
0.863 (0.934) |
0.115 (0.318) |
0.291 (0.529) |
0.02 (0.116) |
0.91 (0.952) |
0.21 (0.444) |
0.627 (0.808) |
0.794 (0.892) |
xq loss | 59 (20%) | 236 |
0.0455 (0.181) |
0.202 (0.441) |
0.816 (0.901) |
0.68 (0.839) |
0.603 (0.797) |
0.782 (0.887) |
0.15 (0.372) |
0.896 (0.943) |
0.0288 (0.141) |
0.427 (0.66) |
3p gain | 71 (24%) | 224 |
0.512 (0.73) |
0.163 (0.392) |
0.737 (0.863) |
0.00627 (0.0559) |
0.695 (0.84) |
1 (1.00) |
0.43 (0.661) |
0.581 (0.791) |
0.425 (0.658) |
0.558 (0.774) |
4q gain | 16 (5%) | 279 |
0.322 (0.565) |
0.233 (0.468) |
0.0303 (0.141) |
0.626 (0.808) |
0.592 (0.797) |
0.342 (0.58) |
0.897 (0.943) |
0.339 (0.576) |
0.895 (0.943) |
0.866 (0.935) |
5q gain | 44 (15%) | 251 |
0.00179 (0.0226) |
0.624 (0.808) |
0.374 (0.611) |
1 (1.00) |
0.262 (0.505) |
0.781 (0.887) |
0.893 (0.943) |
0.957 (0.981) |
0.637 (0.813) |
0.876 (0.938) |
11p gain | 9 (3%) | 286 |
0.761 (0.876) |
0.57 (0.784) |
1 (1.00) |
0.896 (0.943) |
0.376 (0.611) |
0.154 (0.381) |
0.631 (0.812) |
0.0208 (0.118) |
0.832 (0.911) |
0.806 (0.895) |
12p gain | 53 (18%) | 242 |
0.237 (0.471) |
0.195 (0.434) |
0.361 (0.597) |
0.72 (0.851) |
0.00648 (0.0565) |
0.669 (0.83) |
0.706 (0.845) |
0.351 (0.59) |
0.904 (0.948) |
0.9 (0.945) |
12q gain | 50 (17%) | 245 |
0.173 (0.404) |
0.179 (0.415) |
0.664 (0.83) |
0.782 (0.887) |
0.0123 (0.0867) |
0.328 (0.571) |
0.922 (0.96) |
0.271 (0.507) |
1 (1.00) |
0.881 (0.94) |
14q gain | 47 (16%) | 248 |
0.0458 (0.181) |
0.829 (0.908) |
0.72 (0.851) |
0.227 (0.46) |
0.166 (0.394) |
1 (1.00) |
0.284 (0.523) |
0.148 (0.372) |
0.496 (0.72) |
0.989 (1.00) |
16p gain | 44 (15%) | 251 |
0.00833 (0.0666) |
0.693 (0.84) |
0.195 (0.434) |
0.688 (0.84) |
0.446 (0.675) |
0.469 (0.696) |
0.0979 (0.289) |
0.1 (0.293) |
0.881 (0.94) |
0.582 (0.791) |
18q gain | 32 (11%) | 263 |
0.131 (0.345) |
0.504 (0.727) |
0.388 (0.626) |
0.218 (0.45) |
0.00142 (0.0198) |
0.25 (0.49) |
0.339 (0.576) |
0.335 (0.576) |
0.423 (0.657) |
0.392 (0.627) |
19p gain | 44 (15%) | 251 |
0.0171 (0.109) |
0.662 (0.83) |
0.938 (0.971) |
0.987 (1.00) |
0.587 (0.795) |
0.204 (0.441) |
0.935 (0.969) |
0.193 (0.433) |
0.636 (0.812) |
0.597 (0.797) |
21q gain | 37 (13%) | 258 |
0.354 (0.592) |
0.352 (0.59) |
0.801 (0.895) |
0.717 (0.851) |
0.017 (0.109) |
0.355 (0.592) |
0.753 (0.876) |
0.76 (0.876) |
0.924 (0.96) |
0.604 (0.797) |
22q gain | 29 (10%) | 266 |
0.148 (0.372) |
0.761 (0.876) |
0.882 (0.94) |
0.582 (0.791) |
0.0002 (0.00586) |
0.251 (0.491) |
0.778 (0.887) |
0.332 (0.572) |
0.147 (0.372) |
0.961 (0.982) |
xp gain | 42 (14%) | 253 |
0.0267 (0.137) |
0.123 (0.331) |
0.744 (0.868) |
0.356 (0.592) |
0.124 (0.334) |
0.0684 (0.236) |
0.601 (0.797) |
0.169 (0.397) |
0.372 (0.61) |
0.156 (0.383) |
10p loss | 66 (22%) | 229 |
0.00044 (0.0102) |
0.411 (0.648) |
0.524 (0.744) |
0.974 (0.99) |
0.208 (0.443) |
0.529 (0.747) |
0.707 (0.845) |
0.599 (0.797) |
0.115 (0.318) |
0.742 (0.867) |
10q loss | 74 (25%) | 221 |
0.00073 (0.0136) |
0.476 (0.702) |
0.948 (0.977) |
0.964 (0.982) |
0.0727 (0.246) |
0.25 (0.49) |
0.761 (0.876) |
0.136 (0.353) |
0.244 (0.483) |
0.556 (0.773) |
12q loss | 15 (5%) | 280 |
0.364 (0.6) |
0.0417 (0.173) |
0.73 (0.859) |
0.803 (0.895) |
0.691 (0.84) |
0.413 (0.648) |
0.193 (0.433) |
0.539 (0.757) |
0.236 (0.47) |
0.909 (0.951) |
17p loss | 95 (32%) | 200 |
0.0014 (0.0198) |
0.166 (0.394) |
0.0747 (0.248) |
0.576 (0.788) |
0.0586 (0.209) |
0.0551 (0.202) |
0.137 (0.353) |
0.0561 (0.204) |
0.54 (0.757) |
0.29 (0.529) |
19q loss | 29 (10%) | 266 |
0.221 (0.45) |
0.184 (0.423) |
0.376 (0.611) |
0.509 (0.728) |
0.309 (0.549) |
0.413 (0.648) |
0.268 (0.506) |
0.108 (0.304) |
0.196 (0.434) |
0.0258 (0.135) |
20p loss | 23 (8%) | 272 |
0.788 (0.887) |
0.116 (0.32) |
0.221 (0.45) |
0.952 (0.977) |
0.0235 (0.126) |
0.0865 (0.273) |
0.115 (0.318) |
0.15 (0.372) |
0.135 (0.353) |
0.365 (0.6) |
4p gain | 11 (4%) | 284 |
0.536 (0.755) |
0.861 (0.933) |
0.328 (0.571) |
0.209 (0.443) |
0.95 (0.977) |
0.593 (0.797) |
0.54 (0.757) |
0.599 (0.797) |
0.922 (0.96) |
0.873 (0.937) |
6q gain | 36 (12%) | 259 |
0.128 (0.341) |
0.0855 (0.271) |
0.227 (0.46) |
0.0913 (0.278) |
0.206 (0.442) |
0.196 (0.434) |
0.339 (0.576) |
0.191 (0.433) |
0.339 (0.576) |
0.209 (0.443) |
10p gain | 25 (8%) | 270 |
0.0779 (0.255) |
0.759 (0.876) |
0.835 (0.912) |
0.697 (0.841) |
0.816 (0.901) |
0.47 (0.696) |
0.107 (0.304) |
0.696 (0.841) |
0.865 (0.935) |
0.318 (0.561) |
10q gain | 17 (6%) | 278 |
0.623 (0.808) |
0.559 (0.774) |
0.759 (0.876) |
0.701 (0.842) |
0.419 (0.654) |
0.199 (0.439) |
0.358 (0.594) |
0.916 (0.957) |
0.626 (0.808) |
0.701 (0.842) |
15q gain | 52 (18%) | 243 |
0.111 (0.309) |
0.218 (0.45) |
0.365 (0.6) |
0.615 (0.805) |
0.788 (0.887) |
0.872 (0.937) |
0.731 (0.859) |
0.761 (0.876) |
0.608 (0.801) |
0.217 (0.45) |
16q gain | 40 (14%) | 255 |
0.454 (0.684) |
0.322 (0.565) |
0.195 (0.434) |
0.291 (0.529) |
0.669 (0.83) |
0.434 (0.665) |
0.0934 (0.284) |
0.0857 (0.271) |
0.477 (0.702) |
0.466 (0.696) |
2p loss | 19 (6%) | 276 |
0.653 (0.823) |
0.65 (0.823) |
0.69 (0.84) |
0.257 (0.5) |
0.268 (0.506) |
0.183 (0.421) |
0.525 (0.744) |
0.212 (0.444) |
0.509 (0.728) |
0.348 (0.587) |
5p loss | 19 (6%) | 276 |
0.719 (0.851) |
0.462 (0.695) |
0.674 (0.833) |
0.552 (0.771) |
0.889 (0.943) |
0.732 (0.859) |
0.599 (0.797) |
0.591 (0.797) |
0.687 (0.84) |
0.108 (0.304) |
7q loss | 37 (13%) | 258 |
0.0974 (0.289) |
0.17 (0.4) |
0.134 (0.353) |
0.0746 (0.248) |
0.337 (0.576) |
0.219 (0.45) |
0.14 (0.36) |
0.257 (0.5) |
0.57 (0.784) |
0.573 (0.786) |
15q loss | 47 (16%) | 248 |
0.0589 (0.209) |
0.893 (0.943) |
0.876 (0.938) |
0.684 (0.84) |
0.214 (0.448) |
0.593 (0.797) |
0.298 (0.539) |
0.509 (0.728) |
0.265 (0.506) |
0.692 (0.84) |
20q loss | 10 (3%) | 285 |
0.507 (0.728) |
0.21 (0.443) |
0.614 (0.805) |
0.708 (0.845) |
0.49 (0.713) |
0.19 (0.433) |
1 (1.00) |
0.652 (0.823) |
1 (1.00) |
0.514 (0.732) |
P value = 0.00862 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
1P GAIN MUTATED | 29 | 22 | 39 |
1P GAIN WILD-TYPE | 100 | 51 | 54 |
P value = 0.00716 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
1P GAIN MUTATED | 15 | 22 | 26 | 12 | 1 | 14 |
1P GAIN WILD-TYPE | 56 | 32 | 31 | 47 | 8 | 31 |
P value = 0.00033 (Fisher's exact test), Q value = 0.0087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
1P GAIN MUTATED | 19 | 44 | 14 | 12 |
1P GAIN WILD-TYPE | 35 | 56 | 55 | 57 |
P value = 0.00145 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
1P GAIN MUTATED | 12 | 70 | 7 |
1P GAIN WILD-TYPE | 60 | 115 | 28 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
1P GAIN MUTATED | 9 | 31 | 35 | 9 | 6 |
1P GAIN WILD-TYPE | 51 | 64 | 37 | 16 | 37 |
P value = 0.013 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
1P GAIN MUTATED | 12 | 22 | 11 | 39 |
1P GAIN WILD-TYPE | 52 | 28 | 15 | 103 |
P value = 2e-04 (Fisher's exact test), Q value = 0.0059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
1Q GAIN MUTATED | 46 | 34 | 60 |
1Q GAIN WILD-TYPE | 83 | 39 | 33 |
P value = 0.00483 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
1Q GAIN MUTATED | 27 | 60 | 27 | 24 |
1Q GAIN WILD-TYPE | 27 | 40 | 42 | 45 |
P value = 0.00712 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
1Q GAIN MUTATED | 24 | 100 | 14 |
1Q GAIN WILD-TYPE | 48 | 85 | 21 |
P value = 0.00408 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
1Q GAIN MUTATED | 19 | 51 | 42 | 14 | 14 |
1Q GAIN WILD-TYPE | 41 | 44 | 30 | 11 | 29 |
P value = 0.00993 (Fisher's exact test), Q value = 0.075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
1Q GAIN MUTATED | 22 | 30 | 17 | 63 |
1Q GAIN WILD-TYPE | 42 | 20 | 9 | 79 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
2P GAIN MUTATED | 14 | 32 | 18 |
2P GAIN WILD-TYPE | 115 | 41 | 75 |
P value = 0.00982 (Fisher's exact test), Q value = 0.075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
2P GAIN MUTATED | 22 | 10 | 5 | 16 | 4 | 7 |
2P GAIN WILD-TYPE | 49 | 44 | 52 | 43 | 5 | 38 |
P value = 0.015 (Fisher's exact test), Q value = 0.098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
2P GAIN MUTATED | 15 | 12 | 21 | 16 |
2P GAIN WILD-TYPE | 39 | 88 | 48 | 53 |
P value = 0.0395 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
2P GAIN MUTATED | 21 | 32 | 11 |
2P GAIN WILD-TYPE | 51 | 153 | 24 |
P value = 0.00084 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
2P GAIN MUTATED | 18 | 18 | 6 | 11 | 11 |
2P GAIN WILD-TYPE | 42 | 77 | 66 | 14 | 32 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
2Q GAIN MUTATED | 8 | 20 | 9 |
2Q GAIN WILD-TYPE | 121 | 53 | 84 |
P value = 0.0203 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
2Q GAIN MUTATED | 10 | 5 | 10 | 12 |
2Q GAIN WILD-TYPE | 44 | 95 | 59 | 57 |
P value = 0.0047 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
2Q GAIN MUTATED | 13 | 15 | 9 |
2Q GAIN WILD-TYPE | 59 | 170 | 26 |
P value = 0.00267 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
2Q GAIN MUTATED | 12 | 9 | 2 | 5 | 9 |
2Q GAIN WILD-TYPE | 48 | 86 | 70 | 20 | 34 |
P value = 0.00627 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
3P GAIN MUTATED | 10 | 10 | 6 | 4 | 10 |
3P GAIN WILD-TYPE | 22 | 37 | 39 | 19 | 7 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
3Q GAIN MUTATED | 61 | 40 | 74 |
3Q GAIN WILD-TYPE | 68 | 33 | 19 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
3Q GAIN MUTATED | 31 | 36 | 37 | 27 | 6 | 38 |
3Q GAIN WILD-TYPE | 40 | 18 | 20 | 32 | 3 | 7 |
P value = 0.00104 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
3Q GAIN MUTATED | 34 | 73 | 34 | 32 |
3Q GAIN WILD-TYPE | 20 | 27 | 35 | 37 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
3Q GAIN MUTATED | 30 | 128 | 15 |
3Q GAIN WILD-TYPE | 42 | 57 | 20 |
P value = 0.00036 (Fisher's exact test), Q value = 0.0089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
3Q GAIN MUTATED | 23 | 59 | 55 | 16 | 22 |
3Q GAIN WILD-TYPE | 37 | 36 | 17 | 9 | 21 |
P value = 0.00313 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 77 | 80 |
3Q GAIN MUTATED | 60 | 52 | 55 |
3Q GAIN WILD-TYPE | 65 | 25 | 25 |
P value = 0.00018 (Fisher's exact test), Q value = 0.0059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
3Q GAIN MUTATED | 26 | 36 | 22 | 83 |
3Q GAIN WILD-TYPE | 38 | 14 | 4 | 59 |
P value = 0.0303 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 42 | 69 |
4Q GAIN MUTATED | 2 | 0 | 8 |
4Q GAIN WILD-TYPE | 51 | 42 | 61 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
5P GAIN MUTATED | 31 | 48 | 34 |
5P GAIN WILD-TYPE | 98 | 25 | 59 |
P value = 0.0194 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
5P GAIN MUTATED | 18 | 20 | 25 | 32 | 4 | 14 |
5P GAIN WILD-TYPE | 53 | 34 | 32 | 27 | 5 | 31 |
P value = 0.0363 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
5P GAIN MUTATED | 18 | 38 | 20 | 36 |
5P GAIN WILD-TYPE | 36 | 62 | 49 | 33 |
P value = 0.0144 (Fisher's exact test), Q value = 0.097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
5P GAIN MUTATED | 19 | 74 | 19 |
5P GAIN WILD-TYPE | 53 | 111 | 16 |
P value = 0.0348 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
5P GAIN MUTATED | 34 | 23 | 56 |
5P GAIN WILD-TYPE | 65 | 54 | 63 |
P value = 0.00816 (Fisher's exact test), Q value = 0.067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
5P GAIN MUTATED | 14 | 43 | 22 | 13 | 21 |
5P GAIN WILD-TYPE | 46 | 52 | 50 | 12 | 22 |
P value = 0.0294 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
5P GAIN MUTATED | 16 | 19 | 7 | 64 |
5P GAIN WILD-TYPE | 48 | 31 | 19 | 78 |
P value = 0.00179 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
5Q GAIN MUTATED | 11 | 20 | 13 |
5Q GAIN WILD-TYPE | 118 | 53 | 80 |
P value = 0.0205 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
6P GAIN MUTATED | 19 | 6 | 6 | 14 | 3 | 4 |
6P GAIN WILD-TYPE | 52 | 48 | 51 | 45 | 6 | 41 |
P value = 0.00619 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
6P GAIN MUTATED | 7 | 4 | 4 | 7 | 7 |
6P GAIN WILD-TYPE | 25 | 43 | 41 | 16 | 10 |
P value = 0.0255 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
6P GAIN MUTATED | 13 | 9 | 14 | 16 |
6P GAIN WILD-TYPE | 41 | 91 | 55 | 53 |
P value = 0.0368 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
6P GAIN MUTATED | 14 | 10 | 10 | 5 | 13 |
6P GAIN WILD-TYPE | 46 | 85 | 62 | 20 | 30 |
P value = 0.00321 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
7P GAIN MUTATED | 4 | 12 | 7 | 13 | 1 | 1 |
7P GAIN WILD-TYPE | 67 | 42 | 50 | 46 | 8 | 44 |
P value = 0.0283 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
7P GAIN MUTATED | 4 | 13 | 5 | 16 |
7P GAIN WILD-TYPE | 50 | 87 | 64 | 53 |
P value = 0.00052 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
7P GAIN MUTATED | 9 | 3 | 26 |
7P GAIN WILD-TYPE | 90 | 74 | 93 |
P value = 0.0471 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
7Q GAIN MUTATED | 10 | 14 | 13 |
7Q GAIN WILD-TYPE | 119 | 59 | 80 |
P value = 0.00634 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
7Q GAIN MUTATED | 3 | 14 | 8 | 7 | 2 | 3 |
7Q GAIN WILD-TYPE | 68 | 40 | 49 | 52 | 7 | 42 |
P value = 0.00095 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
7Q GAIN MUTATED | 9 | 3 | 25 |
7Q GAIN WILD-TYPE | 90 | 74 | 94 |
P value = 0.0104 (Fisher's exact test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 77 | 80 |
7Q GAIN MUTATED | 17 | 3 | 15 |
7Q GAIN WILD-TYPE | 108 | 74 | 65 |
P value = 0.0227 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
8P GAIN MUTATED | 11 | 25 | 5 | 12 |
8P GAIN WILD-TYPE | 43 | 75 | 64 | 57 |
P value = 0.0273 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
8P GAIN MUTATED | 5 | 26 | 13 | 2 | 7 |
8P GAIN WILD-TYPE | 55 | 69 | 59 | 23 | 36 |
P value = 0.0287 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
8P GAIN MUTATED | 4 | 9 | 6 | 31 |
8P GAIN WILD-TYPE | 60 | 41 | 20 | 111 |
P value = 0.0105 (Fisher's exact test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
8Q GAIN MUTATED | 12 | 22 | 19 | 19 | 6 | 13 |
8Q GAIN WILD-TYPE | 59 | 32 | 38 | 40 | 3 | 32 |
P value = 0.0175 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
8Q GAIN MUTATED | 19 | 36 | 11 | 24 |
8Q GAIN WILD-TYPE | 35 | 64 | 58 | 45 |
P value = 0.00109 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
8Q GAIN MUTATED | 11 | 70 | 9 |
8Q GAIN WILD-TYPE | 61 | 115 | 26 |
P value = 0.00691 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
8Q GAIN MUTATED | 9 | 40 | 21 | 6 | 15 |
8Q GAIN WILD-TYPE | 51 | 55 | 51 | 19 | 28 |
P value = 0.00019 (Fisher's exact test), Q value = 0.0059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
8Q GAIN MUTATED | 7 | 15 | 7 | 57 |
8Q GAIN WILD-TYPE | 57 | 35 | 19 | 85 |
P value = 0.0469 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
9P GAIN MUTATED | 5 | 7 | 14 | 14 | 2 | 7 |
9P GAIN WILD-TYPE | 66 | 47 | 43 | 45 | 7 | 38 |
P value = 0.0334 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 42 | 69 |
9P GAIN MUTATED | 3 | 8 | 15 |
9P GAIN WILD-TYPE | 50 | 34 | 54 |
P value = 0.0109 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
9P GAIN MUTATED | 6 | 32 | 11 |
9P GAIN WILD-TYPE | 66 | 153 | 24 |
P value = 0.0172 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
9P GAIN MUTATED | 6 | 15 | 13 | 1 | 14 |
9P GAIN WILD-TYPE | 54 | 80 | 59 | 24 | 29 |
P value = 0.0282 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
9P GAIN MUTATED | 6 | 8 | 1 | 32 |
9P GAIN WILD-TYPE | 58 | 42 | 25 | 110 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
9Q GAIN MUTATED | 1 | 6 | 15 | 14 | 4 | 7 |
9Q GAIN WILD-TYPE | 70 | 48 | 42 | 45 | 5 | 38 |
P value = 0.0323 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 42 | 69 |
9Q GAIN MUTATED | 3 | 10 | 12 |
9Q GAIN WILD-TYPE | 50 | 32 | 57 |
P value = 0.0105 (Fisher's exact test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
9Q GAIN MUTATED | 10 | 19 | 3 | 15 |
9Q GAIN WILD-TYPE | 44 | 81 | 66 | 54 |
P value = 0.00013 (Fisher's exact test), Q value = 0.0051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
9Q GAIN MUTATED | 2 | 35 | 10 |
9Q GAIN WILD-TYPE | 70 | 150 | 25 |
P value = 0.0243 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
9Q GAIN MUTATED | 8 | 16 | 23 |
9Q GAIN WILD-TYPE | 91 | 61 | 96 |
P value = 0.00289 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
9Q GAIN MUTATED | 2 | 15 | 14 | 3 | 13 |
9Q GAIN WILD-TYPE | 58 | 80 | 58 | 22 | 30 |
P value = 0.00047 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
9Q GAIN MUTATED | 2 | 9 | 1 | 32 |
9Q GAIN WILD-TYPE | 62 | 41 | 25 | 110 |
P value = 0.0208 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
11P GAIN MUTATED | 1 | 2 | 0 | 2 | 4 |
11P GAIN WILD-TYPE | 59 | 93 | 72 | 23 | 39 |
P value = 0.0178 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
11Q GAIN MUTATED | 3 | 5 | 0 |
11Q GAIN WILD-TYPE | 126 | 68 | 93 |
P value = 0.0483 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
11Q GAIN MUTATED | 1 | 0 | 3 | 4 |
11Q GAIN WILD-TYPE | 53 | 100 | 66 | 65 |
P value = 0.0016 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
11Q GAIN MUTATED | 3 | 1 | 4 |
11Q GAIN WILD-TYPE | 69 | 184 | 31 |
P value = 0.0234 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
11Q GAIN MUTATED | 2 | 1 | 0 | 1 | 4 |
11Q GAIN WILD-TYPE | 58 | 94 | 72 | 24 | 39 |
P value = 0.00648 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
12P GAIN MUTATED | 19 | 13 | 9 | 11 |
12P GAIN WILD-TYPE | 35 | 87 | 60 | 58 |
P value = 0.0123 (Fisher's exact test), Q value = 0.087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
12Q GAIN MUTATED | 18 | 13 | 9 | 10 |
12Q GAIN WILD-TYPE | 36 | 87 | 60 | 59 |
P value = 0.0433 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
13Q GAIN MUTATED | 11 | 10 | 2 |
13Q GAIN WILD-TYPE | 61 | 175 | 33 |
P value = 0.00551 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
13Q GAIN MUTATED | 15 | 5 | 4 |
13Q GAIN WILD-TYPE | 84 | 72 | 115 |
P value = 0.0458 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
14Q GAIN MUTATED | 13 | 15 | 19 |
14Q GAIN WILD-TYPE | 116 | 58 | 74 |
P value = 0.00833 (Fisher's exact test), Q value = 0.067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
16P GAIN MUTATED | 11 | 11 | 22 |
16P GAIN WILD-TYPE | 118 | 62 | 71 |
P value = 0.00088 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
17P GAIN MUTATED | 2 | 10 | 10 |
17P GAIN WILD-TYPE | 127 | 63 | 83 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
17P GAIN MUTATED | 8 | 1 | 1 | 3 | 5 | 4 |
17P GAIN WILD-TYPE | 63 | 53 | 56 | 56 | 4 | 41 |
P value = 0.0149 (Fisher's exact test), Q value = 0.098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
17Q GAIN MUTATED | 11 | 17 | 14 |
17Q GAIN WILD-TYPE | 118 | 56 | 79 |
P value = 0.00884 (Fisher's exact test), Q value = 0.069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
17Q GAIN MUTATED | 15 | 5 | 6 | 5 | 5 | 6 |
17Q GAIN WILD-TYPE | 56 | 49 | 51 | 54 | 4 | 39 |
P value = 0.0353 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
18P GAIN MUTATED | 14 | 18 | 17 |
18P GAIN WILD-TYPE | 115 | 55 | 76 |
P value = 0.0413 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
18P GAIN MUTATED | 15 | 19 | 7 | 8 |
18P GAIN WILD-TYPE | 39 | 81 | 62 | 61 |
P value = 0.00142 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
18Q GAIN MUTATED | 12 | 13 | 1 | 6 |
18Q GAIN WILD-TYPE | 42 | 87 | 68 | 63 |
P value = 0.0171 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
19P GAIN MUTATED | 11 | 16 | 17 |
19P GAIN WILD-TYPE | 118 | 57 | 76 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
19Q GAIN MUTATED | 16 | 38 | 18 |
19Q GAIN WILD-TYPE | 113 | 35 | 75 |
P value = 0.0432 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
19Q GAIN MUTATED | 13 | 43 | 14 |
19Q GAIN WILD-TYPE | 59 | 142 | 21 |
P value = 0.00066 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
20P GAIN MUTATED | 29 | 34 | 37 |
20P GAIN WILD-TYPE | 100 | 39 | 56 |
P value = 0.00485 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
20P GAIN MUTATED | 31 | 26 | 16 | 11 | 4 | 12 |
20P GAIN WILD-TYPE | 40 | 28 | 41 | 48 | 5 | 33 |
P value = 0.0073 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
20P GAIN MUTATED | 10 | 13 | 16 | 6 | 13 |
20P GAIN WILD-TYPE | 22 | 34 | 29 | 17 | 4 |
P value = 0.00446 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
20Q GAIN MUTATED | 37 | 36 | 42 |
20Q GAIN WILD-TYPE | 92 | 37 | 51 |
P value = 0.00256 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
20Q GAIN MUTATED | 12 | 13 | 20 | 8 | 14 |
20Q GAIN WILD-TYPE | 20 | 34 | 25 | 15 | 3 |
P value = 0.034 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
20Q GAIN MUTATED | 30 | 32 | 23 | 15 | 15 |
20Q GAIN WILD-TYPE | 30 | 63 | 49 | 10 | 28 |
P value = 0.017 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
21Q GAIN MUTATED | 9 | 19 | 6 | 3 |
21Q GAIN WILD-TYPE | 45 | 81 | 63 | 66 |
P value = 2e-04 (Fisher's exact test), Q value = 0.0059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
22Q GAIN MUTATED | 15 | 5 | 3 | 6 |
22Q GAIN WILD-TYPE | 39 | 95 | 66 | 63 |
P value = 0.0267 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
XP GAIN MUTATED | 13 | 8 | 21 |
XP GAIN WILD-TYPE | 116 | 65 | 72 |
P value = 0.0214 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
XQ GAIN MUTATED | 11 | 11 | 20 |
XQ GAIN WILD-TYPE | 118 | 62 | 73 |
P value = 0.034 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
XQ GAIN MUTATED | 6 | 12 | 5 | 9 | 4 | 6 |
XQ GAIN WILD-TYPE | 65 | 42 | 52 | 50 | 5 | 39 |
P value = 0.00035 (Fisher's exact test), Q value = 0.0089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
1P LOSS MUTATED | 2 | 0 | 2 | 9 |
1P LOSS WILD-TYPE | 52 | 100 | 67 | 60 |
P value = 0.0186 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
1P LOSS MUTATED | 3 | 5 | 5 |
1P LOSS WILD-TYPE | 69 | 180 | 30 |
P value = 0.0197 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
1Q LOSS MUTATED | 2 | 6 | 1 |
1Q LOSS WILD-TYPE | 127 | 67 | 92 |
P value = 0.0411 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
1Q LOSS MUTATED | 1 | 1 | 1 | 6 |
1Q LOSS WILD-TYPE | 53 | 99 | 68 | 63 |
P value = 0.00836 (Fisher's exact test), Q value = 0.067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
2Q LOSS MUTATED | 3 | 21 | 4 | 7 |
2Q LOSS WILD-TYPE | 51 | 79 | 65 | 62 |
P value = 0.0221 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
2Q LOSS MUTATED | 3 | 17 | 10 | 4 | 1 |
2Q LOSS WILD-TYPE | 57 | 78 | 62 | 21 | 42 |
P value = 0.00023 (Fisher's exact test), Q value = 0.0065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
3P LOSS MUTATED | 10 | 22 | 10 | 21 | 6 | 13 |
3P LOSS WILD-TYPE | 61 | 32 | 47 | 38 | 3 | 32 |
P value = 0.0302 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
3P LOSS MUTATED | 19 | 31 | 10 | 21 |
3P LOSS WILD-TYPE | 35 | 69 | 59 | 48 |
P value = 0.00053 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
3P LOSS MUTATED | 9 | 65 | 7 |
3P LOSS WILD-TYPE | 63 | 120 | 28 |
P value = 0.0271 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
3P LOSS MUTATED | 18 | 24 | 40 |
3P LOSS WILD-TYPE | 81 | 53 | 79 |
P value = 0.00345 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
3P LOSS MUTATED | 6 | 33 | 25 | 8 | 10 |
3P LOSS WILD-TYPE | 54 | 62 | 47 | 17 | 33 |
P value = 0.00226 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 77 | 80 |
3P LOSS MUTATED | 25 | 19 | 34 |
3P LOSS WILD-TYPE | 100 | 58 | 46 |
P value = 0.00092 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
3P LOSS MUTATED | 6 | 17 | 10 | 45 |
3P LOSS WILD-TYPE | 58 | 33 | 16 | 97 |
P value = 0.0385 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
3Q LOSS MUTATED | 3 | 2 | 0 | 7 | 1 | 1 |
3Q LOSS WILD-TYPE | 68 | 52 | 57 | 52 | 8 | 44 |
P value = 0.0284 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
3Q LOSS MUTATED | 1 | 1 | 3 | 5 | 0 |
3Q LOSS WILD-TYPE | 31 | 46 | 42 | 18 | 17 |
P value = 0.0214 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
3Q LOSS MUTATED | 4 | 1 | 2 | 7 |
3Q LOSS WILD-TYPE | 50 | 99 | 67 | 62 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
4P LOSS MUTATED | 32 | 48 | 51 |
4P LOSS WILD-TYPE | 97 | 25 | 42 |
P value = 0.00416 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
4P LOSS MUTATED | 26 | 53 | 18 | 32 |
4P LOSS WILD-TYPE | 28 | 47 | 51 | 37 |
P value = 0.00195 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
4P LOSS MUTATED | 20 | 88 | 21 |
4P LOSS WILD-TYPE | 52 | 97 | 14 |
P value = 0.00071 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
4P LOSS MUTATED | 13 | 52 | 31 | 12 | 23 |
4P LOSS WILD-TYPE | 47 | 43 | 41 | 13 | 20 |
P value = 0.00042 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
4P LOSS MUTATED | 15 | 26 | 17 | 66 |
4P LOSS WILD-TYPE | 49 | 24 | 9 | 76 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
4Q LOSS MUTATED | 16 | 45 | 32 |
4Q LOSS WILD-TYPE | 113 | 28 | 61 |
P value = 0.0136 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
4Q LOSS MUTATED | 21 | 53 | 19 |
4Q LOSS WILD-TYPE | 51 | 132 | 16 |
P value = 0.00191 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
5Q LOSS MUTATED | 15 | 23 | 13 |
5Q LOSS WILD-TYPE | 114 | 50 | 80 |
P value = 0.0292 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
5Q LOSS MUTATED | 11 | 11 | 29 |
5Q LOSS WILD-TYPE | 88 | 66 | 90 |
P value = 0.0447 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
5Q LOSS MUTATED | 8 | 9 | 10 | 23 |
5Q LOSS WILD-TYPE | 56 | 41 | 16 | 119 |
P value = 0.039 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
6P LOSS MUTATED | 5 | 15 | 9 | 11 | 0 | 7 |
6P LOSS WILD-TYPE | 66 | 39 | 48 | 48 | 9 | 38 |
P value = 0.029 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
6P LOSS MUTATED | 5 | 37 | 5 |
6P LOSS WILD-TYPE | 67 | 148 | 30 |
P value = 0.00456 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
6Q LOSS MUTATED | 31 | 28 | 15 |
6Q LOSS WILD-TYPE | 98 | 45 | 78 |
P value = 0.00828 (Fisher's exact test), Q value = 0.067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
6Q LOSS MUTATED | 10 | 22 | 14 | 19 | 2 | 7 |
6Q LOSS WILD-TYPE | 61 | 32 | 43 | 40 | 7 | 38 |
P value = 0.0299 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
6Q LOSS MUTATED | 10 | 54 | 10 |
6Q LOSS WILD-TYPE | 62 | 131 | 25 |
P value = 0.0335 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
6Q LOSS MUTATED | 8 | 28 | 17 | 11 | 10 |
6Q LOSS WILD-TYPE | 52 | 67 | 55 | 14 | 33 |
P value = 0.0458 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
7P LOSS MUTATED | 6 | 7 | 13 |
7P LOSS WILD-TYPE | 123 | 66 | 80 |
P value = 0.0409 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
7P LOSS MUTATED | 9 | 7 | 8 | 2 |
7P LOSS WILD-TYPE | 45 | 93 | 61 | 67 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
8P LOSS MUTATED | 23 | 34 | 25 |
8P LOSS WILD-TYPE | 106 | 39 | 68 |
P value = 0.0195 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
8P LOSS MUTATED | 17 | 19 | 18 | 28 |
8P LOSS WILD-TYPE | 37 | 81 | 51 | 41 |
P value = 0.019 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
8P LOSS MUTATED | 27 | 13 | 42 |
8P LOSS WILD-TYPE | 72 | 64 | 77 |
P value = 0.0426 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
8P LOSS MUTATED | 19 | 22 | 14 | 8 | 19 |
8P LOSS WILD-TYPE | 41 | 73 | 58 | 17 | 24 |
P value = 0.0111 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 77 | 80 |
8P LOSS MUTATED | 36 | 14 | 32 |
8P LOSS WILD-TYPE | 89 | 63 | 48 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
8Q LOSS MUTATED | 14 | 0 | 1 | 8 | 0 | 1 |
8Q LOSS WILD-TYPE | 57 | 54 | 56 | 51 | 9 | 44 |
P value = 0.0427 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
8Q LOSS MUTATED | 0 | 7 | 2 | 3 | 3 |
8Q LOSS WILD-TYPE | 32 | 40 | 43 | 20 | 14 |
P value = 0.00015 (Fisher's exact test), Q value = 0.0056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
8Q LOSS MUTATED | 6 | 0 | 10 | 8 |
8Q LOSS WILD-TYPE | 48 | 100 | 59 | 61 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
8Q LOSS MUTATED | 14 | 6 | 4 |
8Q LOSS WILD-TYPE | 58 | 179 | 31 |
P value = 0.0177 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
8Q LOSS MUTATED | 14 | 2 | 8 |
8Q LOSS WILD-TYPE | 85 | 75 | 111 |
P value = 3e-04 (Fisher's exact test), Q value = 0.0082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
8Q LOSS MUTATED | 12 | 3 | 1 | 2 | 6 |
8Q LOSS WILD-TYPE | 48 | 92 | 71 | 23 | 37 |
P value = 0.00121 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
8Q LOSS MUTATED | 12 | 0 | 3 | 9 |
8Q LOSS WILD-TYPE | 52 | 50 | 23 | 133 |
P value = 0.00149 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
9P LOSS MUTATED | 14 | 23 | 17 |
9P LOSS WILD-TYPE | 115 | 50 | 76 |
P value = 0.03 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 42 | 69 |
9P LOSS MUTATED | 14 | 8 | 6 |
9P LOSS WILD-TYPE | 39 | 34 | 63 |
P value = 0.00018 (Fisher's exact test), Q value = 0.0059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
9Q LOSS MUTATED | 11 | 23 | 17 |
9Q LOSS WILD-TYPE | 118 | 50 | 76 |
P value = 0.0435 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
9Q LOSS MUTATED | 20 | 10 | 4 | 9 | 2 | 6 |
9Q LOSS WILD-TYPE | 51 | 44 | 53 | 50 | 7 | 39 |
P value = 0.00191 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 77 | 80 |
9Q LOSS MUTATED | 32 | 10 | 6 |
9Q LOSS WILD-TYPE | 93 | 67 | 74 |
P value = 0.00044 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
10P LOSS MUTATED | 22 | 29 | 15 |
10P LOSS WILD-TYPE | 107 | 44 | 78 |
P value = 0.00073 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
10Q LOSS MUTATED | 25 | 31 | 18 |
10Q LOSS WILD-TYPE | 104 | 42 | 75 |
P value = 0.00144 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
11P LOSS MUTATED | 30 | 34 | 36 |
11P LOSS WILD-TYPE | 99 | 39 | 57 |
P value = 0.0266 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
11P LOSS MUTATED | 5 | 9 | 16 | 8 | 9 |
11P LOSS WILD-TYPE | 27 | 38 | 29 | 15 | 8 |
P value = 0.0324 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
11P LOSS MUTATED | 23 | 38 | 14 | 25 |
11P LOSS WILD-TYPE | 31 | 62 | 55 | 44 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
11Q LOSS MUTATED | 33 | 28 | 54 |
11Q LOSS WILD-TYPE | 96 | 45 | 39 |
P value = 0.0347 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
11Q LOSS MUTATED | 27 | 45 | 20 | 22 |
11Q LOSS WILD-TYPE | 27 | 55 | 49 | 47 |
P value = 0.00728 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
11Q LOSS MUTATED | 17 | 50 | 29 | 8 | 11 |
11Q LOSS WILD-TYPE | 43 | 45 | 43 | 17 | 32 |
P value = 0.0227 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
12P LOSS MUTATED | 12 | 17 | 11 |
12P LOSS WILD-TYPE | 117 | 56 | 82 |
P value = 0.0141 (Fisher's exact test), Q value = 0.095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
12P LOSS MUTATED | 10 | 14 | 2 | 8 | 2 | 4 |
12P LOSS WILD-TYPE | 61 | 40 | 55 | 51 | 7 | 41 |
P value = 0.00063 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
12P LOSS MUTATED | 2 | 4 | 6 | 10 | 0 |
12P LOSS WILD-TYPE | 30 | 43 | 39 | 13 | 17 |
P value = 0.0417 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
12Q LOSS MUTATED | 4 | 5 | 0 | 2 | 2 | 2 |
12Q LOSS WILD-TYPE | 67 | 49 | 57 | 57 | 7 | 43 |
P value = 0.00092 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
13Q LOSS MUTATED | 23 | 31 | 26 |
13Q LOSS WILD-TYPE | 106 | 42 | 67 |
P value = 0.0306 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
13Q LOSS MUTATED | 12 | 18 | 17 | 20 | 5 | 8 |
13Q LOSS WILD-TYPE | 59 | 36 | 40 | 39 | 4 | 37 |
P value = 0.0185 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
13Q LOSS MUTATED | 19 | 25 | 10 | 24 |
13Q LOSS WILD-TYPE | 35 | 75 | 59 | 45 |
P value = 0.0448 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
13Q LOSS MUTATED | 12 | 53 | 13 |
13Q LOSS WILD-TYPE | 60 | 132 | 22 |
P value = 0.00302 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
13Q LOSS MUTATED | 7 | 29 | 17 | 12 | 15 |
13Q LOSS WILD-TYPE | 53 | 66 | 55 | 13 | 28 |
P value = 0.00102 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
14Q LOSS MUTATED | 11 | 18 | 6 |
14Q LOSS WILD-TYPE | 118 | 55 | 87 |
P value = 0.0151 (Fisher's exact test), Q value = 0.099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 77 | 80 |
14Q LOSS MUTATED | 23 | 6 | 5 |
14Q LOSS WILD-TYPE | 102 | 71 | 75 |
P value = 0.0326 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
16P LOSS MUTATED | 12 | 4 | 2 | 9 | 3 | 4 |
16P LOSS WILD-TYPE | 59 | 50 | 55 | 50 | 6 | 41 |
P value = 0.0274 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
16P LOSS MUTATED | 11 | 5 | 9 | 9 |
16P LOSS WILD-TYPE | 43 | 95 | 60 | 60 |
P value = 0.0108 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
16P LOSS MUTATED | 8 | 10 | 2 | 6 | 8 |
16P LOSS WILD-TYPE | 52 | 85 | 70 | 19 | 35 |
P value = 0.0033 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
16Q LOSS MUTATED | 20 | 6 | 3 | 7 | 3 | 5 |
16Q LOSS WILD-TYPE | 51 | 48 | 54 | 52 | 6 | 40 |
P value = 0.00178 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
16Q LOSS MUTATED | 11 | 8 | 19 | 6 |
16Q LOSS WILD-TYPE | 43 | 92 | 50 | 63 |
P value = 0.00134 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
16Q LOSS MUTATED | 21 | 20 | 3 |
16Q LOSS WILD-TYPE | 51 | 165 | 32 |
P value = 0.00938 (Fisher's exact test), Q value = 0.073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
16Q LOSS MUTATED | 23 | 11 | 10 |
16Q LOSS WILD-TYPE | 76 | 66 | 109 |
P value = 0.00113 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
16Q LOSS MUTATED | 17 | 12 | 3 | 6 | 6 |
16Q LOSS WILD-TYPE | 43 | 83 | 69 | 19 | 37 |
P value = 0.0139 (Fisher's exact test), Q value = 0.095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
16Q LOSS MUTATED | 18 | 4 | 4 | 17 |
16Q LOSS WILD-TYPE | 46 | 46 | 22 | 125 |
P value = 0.0014 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
17P LOSS MUTATED | 28 | 33 | 34 |
17P LOSS WILD-TYPE | 101 | 40 | 59 |
P value = 0.0461 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
17Q LOSS MUTATED | 5 | 13 | 4 | 10 | 1 | 4 |
17Q LOSS WILD-TYPE | 66 | 41 | 53 | 49 | 8 | 41 |
P value = 0.0131 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 42 | 69 |
17Q LOSS MUTATED | 11 | 3 | 3 |
17Q LOSS WILD-TYPE | 42 | 39 | 66 |
P value = 0.0115 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
18P LOSS MUTATED | 7 | 11 | 19 | 18 |
18P LOSS WILD-TYPE | 47 | 89 | 50 | 51 |
P value = 0.0393 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
18P LOSS MUTATED | 20 | 27 | 8 |
18P LOSS WILD-TYPE | 52 | 158 | 27 |
P value = 0.0355 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
18P LOSS MUTATED | 19 | 12 | 10 | 4 | 10 |
18P LOSS WILD-TYPE | 41 | 83 | 62 | 21 | 33 |
P value = 0.00071 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
18Q LOSS MUTATED | 27 | 8 | 8 | 22 | 2 | 6 |
18Q LOSS WILD-TYPE | 44 | 46 | 49 | 37 | 7 | 39 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
18Q LOSS MUTATED | 13 | 9 | 26 | 25 |
18Q LOSS WILD-TYPE | 41 | 91 | 43 | 44 |
P value = 0.00096 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
18Q LOSS MUTATED | 27 | 33 | 13 |
18Q LOSS WILD-TYPE | 45 | 152 | 22 |
P value = 0.00019 (Fisher's exact test), Q value = 0.0059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
18Q LOSS MUTATED | 25 | 15 | 11 | 5 | 17 |
18Q LOSS WILD-TYPE | 35 | 80 | 61 | 20 | 26 |
P value = 0.0195 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
18Q LOSS MUTATED | 24 | 6 | 6 | 37 |
18Q LOSS WILD-TYPE | 40 | 44 | 20 | 105 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
19P LOSS MUTATED | 14 | 31 | 15 |
19P LOSS WILD-TYPE | 115 | 42 | 78 |
P value = 0.00045 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
19P LOSS MUTATED | 18 | 8 | 3 | 22 | 2 | 7 |
19P LOSS WILD-TYPE | 53 | 46 | 54 | 37 | 7 | 38 |
P value = 0.0015 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
19P LOSS MUTATED | 13 | 9 | 16 | 22 |
19P LOSS WILD-TYPE | 41 | 91 | 53 | 47 |
P value = 0.00266 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
19P LOSS MUTATED | 18 | 28 | 14 |
19P LOSS WILD-TYPE | 54 | 157 | 21 |
P value = 0.0298 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
19P LOSS MUTATED | 25 | 8 | 27 |
19P LOSS WILD-TYPE | 74 | 69 | 92 |
P value = 0.00012 (Fisher's exact test), Q value = 0.0049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
19P LOSS MUTATED | 13 | 15 | 6 | 12 | 14 |
19P LOSS WILD-TYPE | 47 | 80 | 66 | 13 | 29 |
P value = 0.0147 (Fisher's exact test), Q value = 0.098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
19P LOSS MUTATED | 14 | 3 | 8 | 34 |
19P LOSS WILD-TYPE | 50 | 47 | 18 | 108 |
P value = 0.0258 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
19Q LOSS MUTATED | 8 | 1 | 6 | 14 |
19Q LOSS WILD-TYPE | 56 | 49 | 20 | 128 |
P value = 0.0235 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
20P LOSS MUTATED | 1 | 5 | 6 | 11 |
20P LOSS WILD-TYPE | 53 | 95 | 63 | 58 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
21Q LOSS MUTATED | 9 | 24 | 16 |
21Q LOSS WILD-TYPE | 120 | 49 | 77 |
P value = 0.0477 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
21Q LOSS MUTATED | 13 | 4 | 7 | 17 | 2 | 6 |
21Q LOSS WILD-TYPE | 58 | 50 | 50 | 42 | 7 | 39 |
P value = 0.0233 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
21Q LOSS MUTATED | 6 | 5 | 2 | 4 | 6 |
21Q LOSS WILD-TYPE | 26 | 42 | 43 | 19 | 11 |
P value = 0.0184 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
21Q LOSS MUTATED | 13 | 9 | 10 | 17 |
21Q LOSS WILD-TYPE | 41 | 91 | 59 | 52 |
P value = 0.00407 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
21Q LOSS MUTATED | 12 | 24 | 13 |
21Q LOSS WILD-TYPE | 60 | 161 | 22 |
P value = 0.0264 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
21Q LOSS MUTATED | 8 | 13 | 8 | 9 | 11 |
21Q LOSS WILD-TYPE | 52 | 82 | 64 | 16 | 32 |
P value = 0.00235 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
22Q LOSS MUTATED | 21 | 28 | 22 |
22Q LOSS WILD-TYPE | 108 | 45 | 71 |
P value = 0.02 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
22Q LOSS MUTATED | 21 | 36 | 14 |
22Q LOSS WILD-TYPE | 51 | 149 | 21 |
P value = 0.00459 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
XP LOSS MUTATED | 22 | 26 | 15 |
XP LOSS WILD-TYPE | 107 | 47 | 78 |
P value = 0.00289 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
XP LOSS MUTATED | 13 | 16 | 4 | 20 | 3 | 7 |
XP LOSS WILD-TYPE | 58 | 38 | 53 | 39 | 6 | 38 |
P value = 0.0254 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
XP LOSS MUTATED | 21 | 9 | 33 |
XP LOSS WILD-TYPE | 78 | 68 | 86 |
P value = 0.0203 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 77 | 80 |
XP LOSS MUTATED | 26 | 10 | 25 |
XP LOSS WILD-TYPE | 99 | 67 | 55 |
P value = 0.0455 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
XQ LOSS MUTATED | 23 | 22 | 14 |
XQ LOSS WILD-TYPE | 106 | 51 | 79 |
P value = 0.0288 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 77 | 80 |
XQ LOSS MUTATED | 25 | 9 | 23 |
XQ LOSS WILD-TYPE | 100 | 68 | 57 |
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/CESC-TP/15082579/transformed.cor.cli.txt
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Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/CESC-TP/15095897/CESC-TP.transferedmergedcluster.txt
-
Number of patients = 295
-
Number of significantly arm-level cnvs = 82
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.