Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	10 (28%)	26	0.13937	1	0.64968	1	1	1	0.79041	1	0.6391	1	0.55286	1	0.10786	1	0.263	1	0.26005	1	0.68832	1
1q gain	21 (58%)	15	0.516	1	0.092149	1	1	1	1	1	0.69398	1	0.23623	1	0.11398	1	0.1778	1	0.73579	1	0.58867	1
2p gain	6 (17%)	30	0.66171	1	0.62958	1	1	1	0.63315	1	1	1	0.92261	1	0.36883	1	0.54656	1	1	1	0.59935	1
2q gain	6 (17%)	30	0.18213	1	0.62963	1	1	1	0.7135	1	0.52505	1	0.50354	1	0.36727	1	0.39984	1	1	1	0.59802	1
3p gain	3 (8%)	33	0.23095	1	0.097219	1	1	1	NA	NA	0.32522	1	0.15384	1	0.33578	1	0.23391	1	0.063725	1	0.58134	1
3q gain	8 (22%)	28	0.2357	1	0.057779	1	0.64098	1	0.71623	1	0.10326	1	0.098279	1	0.54059	1	0.66777	1	1	1	0.39299	1
4p gain	3 (8%)	33	1	1	1	1	1	1	NA	NA	1	1	0.7913	1	0.76989	1	0.42131	1	0.55882	1	1	1
5p gain	12 (33%)	24	1	1	0.82109	1	1	1	0.20013	1	0.61497	1	0.97738	1	0.76375	1	1	1	1	1	0.76176	1
5q gain	12 (33%)	24	1	1	0.82305	1	1	1	0.19856	1	0.61454	1	0.97716	1	0.76526	1	1	1	1	1	0.76438	1
6p gain	7 (19%)	29	0.68426	1	1	1	1	1	1	1	0.36898	1	0.8907	1	0.18714	1	0.31794	1	0.67378	1	0.23764	1
7p gain	7 (19%)	29	0.68426	1	1	1	0.62602	1	0.30245	1	0.20908	1	0.38939	1	0.37505	1	0.56494	1	0.67378	1	0.0187	0.602
7q gain	6 (17%)	30	1	1	0.62839	1	1	1	0.68993	1	0.45317	1	0.53753	1	0.68716	1	0.82048	1	1	1	0.0074399	0.476
8p gain	6 (17%)	30	1	1	0.2387	1	0.62602	1	0.67407	1	0.33104	1	0.16682	1	0.20283	1	0.36388	1	0.36668	1	0.11865	1
8q gain	12 (33%)	24	1	1	0.2048	1	0.702	1	0.56835	1	0.17299	1	0.53977	1	0.18326	1	0.16692	1	0.72102	1	0.13161	1
10p gain	5 (14%)	31	1	1	0.39903	1	0.62602	1	0.04119	0.848	0.83395	1	0.072709	1	0.78866	1	0.93283	1	0.62957	1	0.8631	1
11p gain	4 (11%)	32	0.60519	1	0.17833	1	0.5367	1	0.10517	1	0.20205	1	0.0054199	0.476	0.73979	1	0.74486	1	0.28699	1	0.18534	1
11q gain	4 (11%)	32	0.60519	1	0.17733	1	0.5367	1	0.10369	1	0.20246	1	0.0055699	0.476	0.74058	1	0.74787	1	0.28699	1	0.18625	1
12p gain	9 (25%)	27	1	1	0.55721	1	1	1	0.23585	1	1	1	0.90575	1	0.46549	1	0.84128	1	0.4427	1	0.33491	1
12q gain	8 (22%)	28	1	1	0.5355	1	1	1	0.53583	1	0.87936	1	0.98249	1	0.43599	1	0.82574	1	0.23576	1	0.62851	1
13q gain	3 (8%)	33	0.23095	1	0.098399	1	1	1	NA	NA	0.04173	0.848	0.03951	0.848	0.39452	1	0.88659	1	1	1	0.02459	0.649
15q gain	6 (17%)	30	0.66171	1	0.85971	1	1	1	0.91601	1	0.86258	1	0.66006	1	0.19274	1	0.43439	1	0.67737	1	0.0087199	0.48
16p gain	7 (19%)	29	0.091789	1	0.57145	1	0.37171	1	0.63306	1	0.66385	1	0.64013	1	0.37425	1	0.91525	1	0.67378	1	0.2963	1
16q gain	5 (14%)	31	0.34199	1	1	1	1	1	0.092249	1	1	1	0.62304	1	0.92209	1	0.93393	1	1	1	0.92646	1
17p gain	3 (8%)	33	1	1	1	1	1	1	0.25101	1	0.77312	1	0.21504	1	0.68712	1	0.61182	1	0.55882	1	0.57847	1
17q gain	7 (19%)	29	1	1	1	1	1	1	0.53216	1	0.49297	1	0.25311	1	0.93486	1	1	1	0.41782	1	0.52349	1
18p gain	7 (19%)	29	1	1	0.75871	1	0.62602	1	0.30251	1	0.66481	1	0.76222	1	0.48833	1	0.88162	1	0.41782	1	0.84735	1
18q gain	6 (17%)	30	0.39108	1	0.33535	1	0.62602	1	0.67474	1	0.071129	1	0.56649	1	0.19413	1	0.43608	1	0.67737	1	0.39336	1
19p gain	6 (17%)	30	0.66171	1	0.85995	1	0.62602	1	0.72642	1	0.62645	1	0.65693	1	0.57862	1	0.43942	1	0.062805	1	1	1
19q gain	6 (17%)	30	0.66171	1	0.86019	1	0.62602	1	0.72386	1	0.62564	1	0.65931	1	0.58267	1	0.43579	1	0.062805	1	1	1
20p gain	11 (31%)	25	1	1	0.6031	1	1	1	0.48176	1	0.72384	1	0.42559	1	0.23826	1	0.27948	1	0.46459	1	0.33845	1
20q gain	12 (33%)	24	0.73173	1	0.61652	1	1	1	0.27065	1	0.75351	1	0.28335	1	0.14127	1	0.1489	1	0.49911	1	0.22486	1
21q gain	3 (8%)	33	1	1	0.47802	1	1	1	0.67398	1	0.45474	1	0.88748	1	0.18461	1	0.70684	1	0.25	1	0.13119	1
22q gain	5 (14%)	31	0.34199	1	0.59912	1	0.61106	1	1	1	0.087289	1	0.28703	1	0.85173	1	0.93281	1	1	1	0.9282	1
1p loss	4 (11%)	32	1	1	1	1	1	1	0.75338	1	0.65682	1	0.6127	1	0.81543	1	0.79552	1	0.62567	1	0.80975	1
3p loss	22 (61%)	14	0.0022205	0.366	0.24911	1	0.69561	1	0.060669	1	0.61735	1	0.01168	0.517	0.77559	1	0.58875	1	0.49921	1	0.99114	1
3q loss	3 (8%)	33	0.59286	1	0.47857	1	0.51954	1	NA	NA	0.16621	1	0.02293	0.631	0.68979	1	0.61112	1	0.55882	1	0.39554	1
4p loss	10 (28%)	26	0.27417	1	0.1009	1	0.41723	1	1	1	0.22385	1	0.32195	1	0.78429	1	0.64839	1	0.7086	1	0.28598	1
4q loss	13 (36%)	23	1	1	0.38793	1	1	1	0.68749	1	0.37108	1	0.38943	1	0.45872	1	0.83732	1	0.73555	1	0.36385	1
6p loss	5 (14%)	31	0.65043	1	0.0221	0.631	1	1	1	1	0.70353	1	0.98215	1	0.36962	1	0.24108	1	0.62957	1	0.98187	1
6q loss	20 (56%)	16	0.00024181	0.16	0.01261	0.52	0.0068299	0.476	0.02207	0.631	0.19066	1	0.14389	1	0.20794	1	0.25508	1	0.32043	1	0.40712	1
7p loss	4 (11%)	32	0.60519	1	0.42137	1	0.51954	1	NA	NA	0.43036	1	0.28167	1	0.51288	1	0.90699	1	1	1	0.85681	1
7q loss	4 (11%)	32	1	1	0.42212	1	1	1	NA	NA	0.42774	1	0.28463	1	0.32144	1	0.27747	1	0.28699	1	0.39138	1
8p loss	10 (28%)	26	0.71692	1	0.12693	1	1	1	0.55018	1	0.01784	0.602	0.076999	1	0.094079	1	0.03621	0.824	0.26005	1	0.16902	1
8q loss	3 (8%)	33	0.59286	1	0.25982	1	0.27931	1	0.52279	1	0.2453	1	0.79009	1	0.7703	1	0.077409	1	1	1	0.13305	1
9p loss	18 (50%)	18	1	1	0.28794	1	0.4664	1	0.0062099	0.476	0.69236	1	0.29486	1	0.18782	1	0.12802	1	0.49979	1	0.59131	1
9q loss	19 (53%)	17	1	1	0.77097	1	1	1	0.01125	0.517	0.5823	1	0.13271	1	0.7078	1	0.36818	1	0.19221	1	0.60655	1
10p loss	6 (17%)	30	1	1	0.86043	1	1	1	0.10785	1	0.7319	1	0.35847	1	0.58076	1	0.77664	1	0.67737	1	0.01417	0.52
10q loss	5 (14%)	31	0.16721	1	0.59645	1	1	1	0.67789	1	0.41021	1	0.98301	1	0.85076	1	0.69726	1	1	1	0.55398	1
11p loss	8 (22%)	28	0.43385	1	1	1	0.62602	1	0.48729	1	0.20824	1	0.52932	1	1	1	0.83927	1	0.69403	1	0.38956	1
11q loss	9 (25%)	27	0.25529	1	1	1	0.37171	1	0.48453	1	0.074519	1	0.47163	1	0.76522	1	0.58309	1	0.70496	1	0.75807	1
12q loss	3 (8%)	33	0.23095	1	0.4777	1	0.12644	1	NA	NA	0.3254	1	0.15605	1	0.60859	1	1	1	1	1	0.3971	1
13q loss	15 (42%)	21	1	1	1	1	0.71163	1	0.51593	1	0.62964	1	0.7448	1	0.75448	1	0.31411	1	0.73579	1	0.33268	1
14q loss	13 (36%)	23	0.013954	0.52	0.56378	1	0.41889	1	0.0071799	0.476	1	1	0.04241	0.848	1	1	0.90881	1	0.4837	1	0.28205	1
15q loss	5 (14%)	31	0.34199	1	0.59744	1	1	1	1	1	0.086989	1	0.28926	1	0.50814	1	0.75378	1	0.62957	1	0.9817	1
16p loss	4 (11%)	32	1	1	1	1	0.51954	1	NA	NA	0.80849	1	1	1	0.73966	1	0.96625	1	0.62567	1	0.18597	1
16q loss	7 (19%)	29	0.68426	1	0.33335	1	0.62602	1	0.43124	1	0.65955	1	0.41154	1	0.66126	1	0.01916	0.602	1	1	0.66305	1
17p loss	10 (28%)	26	0.71692	1	0.51865	1	1	1	1	1	0.11291	1	0.35344	1	0.25463	1	0.2907	1	1	1	0.141	1
18p loss	6 (17%)	30	1	1	1	1	0.12644	1	0.48113	1	0.4448	1	0.60272	1	0.23799	1	0.57079	1	0.36668	1	0.3112	1
18q loss	8 (22%)	28	0.2357	1	0.70086	1	0.32683	1	0.84141	1	0.10101	1	0.61312	1	0.13073	1	0.25253	1	0.42405	1	0.062809	1
19p loss	4 (11%)	32	0.60519	1	0.29857	1	0.61106	1	1	1	0.14806	1	0.68188	1	0.04978	0.966	0.24318	1	0.12478	1	0.0079299	0.476
19q loss	3 (8%)	33	1	1	0.47909	1	0.51954	1	NA	NA	0.32448	1	0.73385	1	0.86164	1	1	1	1	1	0.57766	1
20p loss	5 (14%)	31	1	1	0.59605	1	0.51954	1	NA	NA	0.03134	0.739	0.52161	1	0.095409	1	0.41479	1	0.37611	1	0.01174	0.517
21q loss	15 (42%)	21	0.31067	1	1	1	1	1	0.71456	1	0.13571	1	0.28899	1	0.33178	1	0.62875	1	0.31037	1	0.68821	1
22q loss	5 (14%)	31	0.65043	1	0.83879	1	0.62602	1	0.37778	1	0.33268	1	0.15433	1	0.67711	1	0.80173	1	0.37611	1	0.3993	1
xp loss	15 (42%)	21	0.0018513	0.366	0.02711	0.663	0.44248	1	0.84857	1	1	1	0.26568	1	0.57511	1	0.96286	1	0.50061	1	0.99618	1
xq loss	15 (42%)	21	0.0018513	0.366	0.02696	0.663	0.44248	1	0.84758	1	1	1	0.26346	1	0.57231	1	0.96236	1	0.50061	1	0.99614	1