This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and selected clinical features.
Testing the association between copy number variation 81 arm-level events and 12 clinical features across 443 patients, 206 significant findings detected with Q value < 0.25.
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1q gain cnv correlated to 'PATHOLOGY_M_STAGE' and 'NUMBER_OF_LYMPH_NODES'.
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2q gain cnv correlated to 'PATHOLOGY_N_STAGE' and 'NUMBER_OF_LYMPH_NODES'.
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3p gain cnv correlated to 'NEOPLASM_DISEASESTAGE'.
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3q gain cnv correlated to 'NEOPLASM_DISEASESTAGE'.
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4p gain cnv correlated to 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'RACE'.
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4q gain cnv correlated to 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'RACE'.
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5p gain cnv correlated to 'PATHOLOGY_N_STAGE' and 'NUMBER_OF_LYMPH_NODES'.
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6p gain cnv correlated to 'PATHOLOGY_N_STAGE', 'RADIATIONS_RADIATION_REGIMENINDICATION', and 'NUMBER_OF_LYMPH_NODES'.
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6q gain cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'RADIATIONS_RADIATION_REGIMENINDICATION', and 'NUMBER_OF_LYMPH_NODES'.
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7p gain cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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7q gain cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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8q gain cnv correlated to 'YEARS_TO_BIRTH' and 'HISTOLOGICAL_TYPE'.
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9p gain cnv correlated to 'Time to Death', 'NEOPLASM_DISEASESTAGE', 'HISTOLOGICAL_TYPE', and 'RACE'.
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9q gain cnv correlated to 'Time to Death' and 'HISTOLOGICAL_TYPE'.
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10p gain cnv correlated to 'Time to Death', 'PATHOLOGY_N_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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10q gain cnv correlated to 'YEARS_TO_BIRTH', 'NUMBER_OF_LYMPH_NODES', and 'RACE'.
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11p gain cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', 'RADIATIONS_RADIATION_REGIMENINDICATION', and 'NUMBER_OF_LYMPH_NODES'.
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11q gain cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', 'RADIATIONS_RADIATION_REGIMENINDICATION', and 'NUMBER_OF_LYMPH_NODES'.
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12q gain cnv correlated to 'NEOPLASM_DISEASESTAGE' and 'NUMBER_OF_LYMPH_NODES'.
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13q gain cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', 'COMPLETENESS_OF_RESECTION', and 'NUMBER_OF_LYMPH_NODES'.
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14q gain cnv correlated to 'HISTOLOGICAL_TYPE' and 'RACE'.
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15q gain cnv correlated to 'COMPLETENESS_OF_RESECTION'.
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16p gain cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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16q gain cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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17p gain cnv correlated to 'RACE'.
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18p gain cnv correlated to 'PATHOLOGY_N_STAGE' and 'HISTOLOGICAL_TYPE'.
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18q gain cnv correlated to 'HISTOLOGICAL_TYPE'.
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20p gain cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_M_STAGE', and 'HISTOLOGICAL_TYPE'.
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20q gain cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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21q gain cnv correlated to 'YEARS_TO_BIRTH'.
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xp gain cnv correlated to 'PATHOLOGY_T_STAGE'.
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xq gain cnv correlated to 'PATHOLOGY_T_STAGE'.
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1p loss cnv correlated to 'Time to Death', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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1q loss cnv correlated to 'Time to Death', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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4p loss cnv correlated to 'Time to Death', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', 'RADIATIONS_RADIATION_REGIMENINDICATION', 'COMPLETENESS_OF_RESECTION', and 'NUMBER_OF_LYMPH_NODES'.
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4q loss cnv correlated to 'Time to Death', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'RADIATIONS_RADIATION_REGIMENINDICATION', and 'NUMBER_OF_LYMPH_NODES'.
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5p loss cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'RADIATIONS_RADIATION_REGIMENINDICATION', and 'NUMBER_OF_LYMPH_NODES'.
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5q loss cnv correlated to 'Time to Death', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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6p loss cnv correlated to 'Time to Death' and 'RACE'.
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6q loss cnv correlated to 'Time to Death', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'RACE'.
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8p loss cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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8q loss cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', and 'PATHOLOGY_M_STAGE'.
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9p loss cnv correlated to 'HISTOLOGICAL_TYPE'.
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9q loss cnv correlated to 'PATHOLOGY_M_STAGE' and 'HISTOLOGICAL_TYPE'.
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10p loss cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_M_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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10q loss cnv correlated to 'PATHOLOGY_M_STAGE'.
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11p loss cnv correlated to 'NUMBER_OF_LYMPH_NODES'.
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11q loss cnv correlated to 'PATHOLOGY_M_STAGE' and 'NUMBER_OF_LYMPH_NODES'.
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12p loss cnv correlated to 'HISTOLOGICAL_TYPE' and 'NUMBER_OF_LYMPH_NODES'.
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12q loss cnv correlated to 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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13q loss cnv correlated to 'NUMBER_OF_LYMPH_NODES' and 'RACE'.
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14q loss cnv correlated to 'PATHOLOGY_M_STAGE' and 'HISTOLOGICAL_TYPE'.
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15q loss cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', 'RADIATIONS_RADIATION_REGIMENINDICATION', and 'NUMBER_OF_LYMPH_NODES'.
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16q loss cnv correlated to 'YEARS_TO_BIRTH'.
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17p loss cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', 'COMPLETENESS_OF_RESECTION', and 'NUMBER_OF_LYMPH_NODES'.
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17q loss cnv correlated to 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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18p loss cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', 'COMPLETENESS_OF_RESECTION', and 'NUMBER_OF_LYMPH_NODES'.
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18q loss cnv correlated to 'YEARS_TO_BIRTH', 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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19p loss cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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19q loss cnv correlated to 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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21q loss cnv correlated to 'PATHOLOGY_N_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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22q loss cnv correlated to 'NEOPLASM_DISEASESTAGE', 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', 'HISTOLOGICAL_TYPE', and 'NUMBER_OF_LYMPH_NODES'.
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xp loss cnv correlated to 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
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xq loss cnv correlated to 'PATHOLOGY_N_STAGE', 'PATHOLOGY_M_STAGE', and 'NUMBER_OF_LYMPH_NODES'.
Clinical Features |
Time to Death |
YEARS TO BIRTH |
NEOPLASM DISEASESTAGE |
PATHOLOGY T STAGE |
PATHOLOGY N STAGE |
PATHOLOGY M STAGE |
GENDER |
HISTOLOGICAL TYPE |
RADIATIONS RADIATION REGIMENINDICATION |
COMPLETENESS OF RESECTION |
NUMBER OF LYMPH NODES |
RACE | ||
nCNV (%) | nWild-Type | logrank test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Wilcoxon-test | Fisher's exact test | |
4p loss | 132 (30%) | 311 |
0.0473 (0.233) |
0.835 (1.00) |
0.00248 (0.0394) |
0.272 (0.653) |
0.0009 (0.0211) |
1.38e-05 (0.00191) |
1 (1.00) |
0.0218 (0.153) |
0.026 (0.17) |
0.0285 (0.171) |
0.00044 (0.0147) |
0.79 (1.00) |
11p gain | 52 (12%) | 391 |
0.907 (1.00) |
0.00427 (0.061) |
0.00542 (0.0702) |
0.0903 (0.36) |
0.011 (0.112) |
0.0138 (0.13) |
1 (1.00) |
0.00762 (0.0892) |
0.0376 (0.2) |
0.231 (0.611) |
0.00684 (0.0834) |
0.578 (0.877) |
18p loss | 249 (56%) | 194 |
0.7 (0.958) |
0.0271 (0.17) |
0.00044 (0.0147) |
0.934 (1.00) |
0.00395 (0.0573) |
2.25e-05 (0.00243) |
0.339 (0.707) |
1.19e-09 (1.16e-06) |
0.26 (0.638) |
0.0269 (0.17) |
0.00183 (0.0331) |
0.983 (1.00) |
11q gain | 50 (11%) | 393 |
0.64 (0.919) |
0.000225 (0.00913) |
0.00528 (0.0702) |
0.292 (0.665) |
0.00806 (0.0905) |
0.174 (0.531) |
1 (1.00) |
0.00742 (0.088) |
0.0348 (0.192) |
0.366 (0.737) |
0.00911 (0.0973) |
0.741 (0.98) |
13q gain | 253 (57%) | 190 |
0.538 (0.846) |
0.553 (0.86) |
0.00053 (0.0156) |
0.986 (1.00) |
0.00324 (0.05) |
0.00193 (0.0337) |
0.387 (0.753) |
2.08e-06 (0.000511) |
0.264 (0.642) |
0.0308 (0.177) |
0.0101 (0.106) |
0.194 (0.564) |
4q loss | 121 (27%) | 322 |
0.029 (0.173) |
0.862 (1.00) |
0.0152 (0.137) |
0.263 (0.641) |
0.00091 (0.0211) |
0.0044 (0.061) |
0.595 (0.894) |
0.118 (0.42) |
0.02 (0.146) |
0.348 (0.715) |
0.000465 (0.0149) |
0.633 (0.917) |
15q loss | 153 (35%) | 290 |
0.269 (0.651) |
0.44 (0.793) |
0.0284 (0.171) |
0.655 (0.932) |
0.0315 (0.179) |
0.00116 (0.0252) |
0.765 (0.997) |
0.0284 (0.171) |
0.0407 (0.21) |
0.377 (0.744) |
0.0197 (0.146) |
0.149 (0.485) |
17p loss | 230 (52%) | 213 |
0.16 (0.504) |
0.0757 (0.323) |
0.0001 (0.00748) |
0.678 (0.941) |
0.00012 (0.00778) |
0.000257 (0.00962) |
0.0577 (0.266) |
1.11e-05 (0.00179) |
0.249 (0.626) |
0.0376 (0.2) |
3.03e-05 (0.00295) |
0.803 (1.00) |
18q loss | 266 (60%) | 177 |
0.872 (1.00) |
0.0186 (0.143) |
2e-05 (0.00243) |
0.853 (1.00) |
0.00013 (0.00786) |
0.000113 (0.00778) |
0.245 (0.626) |
3.9e-09 (1.9e-06) |
0.279 (0.66) |
0.108 (0.4) |
0.00018 (0.00847) |
0.927 (1.00) |
7p gain | 244 (55%) | 199 |
0.826 (1.00) |
0.122 (0.429) |
5e-05 (0.00442) |
0.345 (0.714) |
0.00019 (0.00847) |
0.0254 (0.169) |
0.924 (1.00) |
0.0261 (0.17) |
0.256 (0.635) |
0.286 (0.665) |
0.000494 (0.015) |
0.464 (0.801) |
20q gain | 315 (71%) | 128 |
0.944 (1.00) |
0.206 (0.58) |
0.00184 (0.0331) |
0.309 (0.68) |
0.0134 (0.13) |
0.00208 (0.0355) |
0.294 (0.665) |
2.1e-06 (0.000511) |
0.56 (0.865) |
0.0921 (0.363) |
0.0174 (0.141) |
0.638 (0.918) |
1p loss | 92 (21%) | 351 |
0.0171 (0.141) |
0.9 (1.00) |
0.017 (0.141) |
0.373 (0.741) |
0.00069 (0.0186) |
0.00109 (0.024) |
0.293 (0.665) |
0.305 (0.675) |
1 (1.00) |
0.42 (0.787) |
0.000257 (0.00962) |
0.423 (0.787) |
5q loss | 76 (17%) | 367 |
0.0366 (0.198) |
0.27 (0.652) |
0.0341 (0.192) |
0.797 (1.00) |
0.00107 (0.024) |
0.0364 (0.197) |
0.316 (0.685) |
0.271 (0.653) |
0.0776 (0.325) |
0.668 (0.936) |
0.000192 (0.00847) |
0.366 (0.737) |
8p loss | 139 (31%) | 304 |
0.92 (1.00) |
0.527 (0.837) |
0.0181 (0.141) |
0.228 (0.611) |
0.00163 (0.0317) |
0.000547 (0.0156) |
0.259 (0.638) |
0.0509 (0.244) |
1 (1.00) |
0.0583 (0.266) |
0.00065 (0.0181) |
0.296 (0.665) |
22q loss | 142 (32%) | 301 |
0.0879 (0.353) |
0.624 (0.906) |
0.00122 (0.0258) |
0.372 (0.741) |
0.00014 (0.00786) |
0.00162 (0.0317) |
1 (1.00) |
0.00474 (0.0649) |
1 (1.00) |
0.429 (0.787) |
0.000146 (0.00786) |
0.381 (0.748) |
6q gain | 77 (17%) | 366 |
0.491 (0.816) |
0.453 (0.797) |
0.0409 (0.21) |
0.966 (1.00) |
0.0231 (0.159) |
0.273 (0.653) |
0.802 (1.00) |
0.716 (0.966) |
0.00508 (0.0686) |
0.846 (1.00) |
0.0361 (0.197) |
0.891 (1.00) |
7q gain | 221 (50%) | 222 |
0.9 (1.00) |
0.0689 (0.306) |
0.0178 (0.141) |
0.177 (0.535) |
0.0159 (0.138) |
0.018 (0.141) |
1 (1.00) |
0.0704 (0.308) |
0.623 (0.906) |
0.437 (0.793) |
0.0114 (0.114) |
0.352 (0.716) |
9p gain | 79 (18%) | 364 |
0.0114 (0.114) |
0.392 (0.757) |
0.0239 (0.163) |
0.488 (0.816) |
0.2 (0.572) |
0.188 (0.559) |
0.711 (0.964) |
0.0171 (0.141) |
1 (1.00) |
0.904 (1.00) |
0.176 (0.534) |
0.0278 (0.171) |
16p gain | 106 (24%) | 337 |
0.348 (0.715) |
0.155 (0.493) |
0.00558 (0.0714) |
0.935 (1.00) |
0.00387 (0.057) |
0.247 (0.626) |
0.911 (1.00) |
0.00541 (0.0702) |
0.561 (0.865) |
0.901 (1.00) |
0.00244 (0.0394) |
0.433 (0.79) |
16q gain | 104 (23%) | 339 |
0.319 (0.689) |
0.113 (0.411) |
0.00144 (0.0298) |
0.953 (1.00) |
0.00176 (0.0331) |
0.507 (0.825) |
0.737 (0.977) |
0.00807 (0.0905) |
0.553 (0.86) |
0.744 (0.982) |
0.00236 (0.0388) |
0.44 (0.793) |
1q loss | 53 (12%) | 390 |
0.0284 (0.171) |
0.713 (0.964) |
0.0895 (0.358) |
0.808 (1.00) |
0.0252 (0.169) |
0.0475 (0.233) |
0.244 (0.624) |
1 (1.00) |
1 (1.00) |
0.481 (0.812) |
0.0145 (0.135) |
0.227 (0.611) |
5p loss | 57 (13%) | 386 |
0.166 (0.509) |
0.385 (0.751) |
0.00952 (0.101) |
0.287 (0.665) |
0.0257 (0.17) |
0.206 (0.58) |
1 (1.00) |
0.306 (0.675) |
0.0448 (0.224) |
0.551 (0.86) |
0.019 (0.144) |
0.617 (0.904) |
6q loss | 45 (10%) | 398 |
0.0107 (0.111) |
0.804 (1.00) |
0.678 (0.941) |
0.231 (0.611) |
0.0499 (0.241) |
0.161 (0.504) |
0.53 (0.837) |
0.649 (0.928) |
1 (1.00) |
0.17 (0.522) |
0.00701 (0.0841) |
0.0161 (0.139) |
19p loss | 39 (9%) | 404 |
0.071 (0.309) |
0.225 (0.608) |
0.0181 (0.141) |
1 (1.00) |
0.00088 (0.0211) |
0.00252 (0.0394) |
0.868 (1.00) |
0.331 (0.701) |
0.242 (0.622) |
0.282 (0.662) |
7.6e-05 (0.00616) |
0.827 (1.00) |
4p gain | 12 (3%) | 431 |
0.865 (1.00) |
0.257 (0.635) |
0.205 (0.58) |
0.69 (0.951) |
0.0279 (0.171) |
0.164 (0.506) |
0.389 (0.755) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.0156 (0.138) |
0.00194 (0.0337) |
4q gain | 17 (4%) | 426 |
0.451 (0.796) |
0.801 (1.00) |
0.428 (0.787) |
0.951 (1.00) |
0.00845 (0.092) |
0.0579 (0.266) |
0.334 (0.701) |
0.489 (0.816) |
1 (1.00) |
0.331 (0.701) |
0.00635 (0.0802) |
0.0307 (0.177) |
6p gain | 85 (19%) | 358 |
0.811 (1.00) |
0.678 (0.941) |
0.115 (0.414) |
0.906 (1.00) |
0.0173 (0.141) |
0.483 (0.814) |
0.334 (0.701) |
0.725 (0.967) |
0.00686 (0.0834) |
0.618 (0.904) |
0.0225 (0.157) |
0.312 (0.682) |
10p gain | 35 (8%) | 408 |
0.0238 (0.163) |
0.412 (0.782) |
0.458 (0.801) |
0.461 (0.801) |
0.0469 (0.233) |
0.426 (0.787) |
0.862 (1.00) |
1 (1.00) |
1 (1.00) |
0.31 (0.68) |
0.0529 (0.25) |
0.163 (0.505) |
10q gain | 21 (5%) | 422 |
0.756 (0.991) |
0.0347 (0.192) |
0.463 (0.801) |
0.965 (1.00) |
0.0946 (0.367) |
0.718 (0.967) |
0.824 (1.00) |
0.509 (0.825) |
1 (1.00) |
0.673 (0.94) |
0.0267 (0.17) |
0.0411 (0.21) |
20p gain | 240 (54%) | 203 |
0.333 (0.701) |
0.34 (0.707) |
0.00016 (0.00819) |
0.798 (1.00) |
0.159 (0.504) |
0.000273 (0.00983) |
0.215 (0.595) |
0.000735 (0.0188) |
0.254 (0.632) |
0.0631 (0.283) |
0.0877 (0.353) |
0.984 (1.00) |
8q loss | 24 (5%) | 419 |
0.789 (1.00) |
0.79 (1.00) |
0.052 (0.247) |
0.24 (0.62) |
0.0174 (0.141) |
0.0298 (0.174) |
0.676 (0.941) |
0.552 (0.86) |
1 (1.00) |
0.787 (1.00) |
0.742 (0.98) |
0.0781 (0.326) |
10p loss | 67 (15%) | 376 |
0.988 (1.00) |
0.195 (0.565) |
0.0347 (0.192) |
0.965 (1.00) |
0.0818 (0.337) |
0.0184 (0.142) |
0.791 (1.00) |
0.332 (0.701) |
0.0611 (0.276) |
0.529 (0.837) |
0.0318 (0.18) |
0.563 (0.868) |
12q loss | 48 (11%) | 395 |
0.317 (0.685) |
0.455 (0.799) |
0.164 (0.506) |
0.467 (0.801) |
0.0374 (0.2) |
0.106 (0.398) |
0.76 (0.995) |
0.0442 (0.223) |
1 (1.00) |
0.87 (1.00) |
0.0137 (0.13) |
0.416 (0.784) |
17q loss | 66 (15%) | 377 |
0.134 (0.449) |
0.897 (1.00) |
0.19 (0.562) |
0.369 (0.741) |
0.0158 (0.138) |
0.0402 (0.209) |
0.79 (1.00) |
0.698 (0.958) |
1 (1.00) |
0.725 (0.967) |
0.000891 (0.0211) |
0.111 (0.406) |
19q loss | 35 (8%) | 408 |
0.224 (0.605) |
0.373 (0.741) |
0.0829 (0.34) |
0.984 (1.00) |
0.00161 (0.0317) |
0.0164 (0.14) |
0.725 (0.967) |
0.44 (0.793) |
0.219 (0.603) |
0.238 (0.618) |
0.000474 (0.0149) |
0.0788 (0.327) |
21q loss | 120 (27%) | 323 |
0.738 (0.977) |
0.95 (1.00) |
0.56 (0.865) |
0.464 (0.801) |
0.0196 (0.146) |
0.154 (0.493) |
0.831 (1.00) |
0.00798 (0.0905) |
1 (1.00) |
0.765 (0.997) |
0.0199 (0.146) |
0.342 (0.708) |
xp loss | 63 (14%) | 380 |
0.207 (0.58) |
0.818 (1.00) |
0.0746 (0.322) |
0.15 (0.485) |
0.00071 (0.0187) |
0.0273 (0.17) |
0.22 (0.603) |
0.427 (0.787) |
1 (1.00) |
0.871 (1.00) |
0.000206 (0.0087) |
0.667 (0.936) |
xq loss | 51 (12%) | 392 |
0.46 (0.801) |
0.747 (0.984) |
0.161 (0.504) |
0.154 (0.493) |
0.00852 (0.092) |
0.0081 (0.0905) |
0.374 (0.741) |
0.829 (1.00) |
1 (1.00) |
0.493 (0.818) |
0.00386 (0.057) |
0.694 (0.954) |
1q gain | 79 (18%) | 364 |
0.496 (0.819) |
0.498 (0.82) |
0.22 (0.603) |
0.57 (0.873) |
0.133 (0.448) |
0.00355 (0.0539) |
0.136 (0.451) |
0.103 (0.386) |
0.446 (0.793) |
0.259 (0.638) |
0.0269 (0.17) |
1 (1.00) |
2q gain | 75 (17%) | 368 |
0.247 (0.626) |
0.476 (0.809) |
0.206 (0.58) |
0.439 (0.793) |
0.0262 (0.17) |
0.572 (0.874) |
0.9 (1.00) |
0.141 (0.465) |
0.428 (0.787) |
0.146 (0.478) |
0.0209 (0.151) |
0.608 (0.898) |
5p gain | 67 (15%) | 376 |
0.815 (1.00) |
0.0945 (0.367) |
0.296 (0.665) |
0.885 (1.00) |
0.0486 (0.238) |
0.435 (0.79) |
0.289 (0.665) |
0.847 (1.00) |
1 (1.00) |
0.399 (0.762) |
0.031 (0.177) |
0.195 (0.565) |
8q gain | 223 (50%) | 220 |
0.898 (1.00) |
0.018 (0.141) |
0.572 (0.874) |
0.237 (0.618) |
0.576 (0.876) |
0.267 (0.648) |
0.506 (0.825) |
0.0519 (0.247) |
0.248 (0.626) |
0.543 (0.851) |
0.398 (0.761) |
0.956 (1.00) |
9q gain | 71 (16%) | 372 |
0.0135 (0.13) |
0.4 (0.763) |
0.21 (0.584) |
0.426 (0.787) |
0.539 (0.846) |
0.182 (0.545) |
1 (1.00) |
0.0228 (0.158) |
1 (1.00) |
0.943 (1.00) |
0.377 (0.744) |
0.0961 (0.371) |
12q gain | 87 (20%) | 356 |
0.8 (1.00) |
0.118 (0.42) |
0.0155 (0.138) |
0.449 (0.796) |
0.0563 (0.262) |
0.381 (0.748) |
0.72 (0.967) |
0.295 (0.665) |
1 (1.00) |
0.348 (0.715) |
0.0267 (0.17) |
0.65 (0.928) |
14q gain | 35 (8%) | 408 |
0.803 (1.00) |
0.789 (1.00) |
0.581 (0.879) |
0.807 (1.00) |
0.476 (0.809) |
0.289 (0.665) |
0.601 (0.897) |
0.0391 (0.204) |
1 (1.00) |
0.723 (0.967) |
0.296 (0.665) |
0.0296 (0.174) |
18p gain | 22 (5%) | 421 |
0.291 (0.665) |
0.503 (0.823) |
0.0947 (0.367) |
0.968 (1.00) |
0.0309 (0.177) |
1 (1.00) |
0.382 (0.748) |
0.0197 (0.146) |
1 (1.00) |
0.527 (0.837) |
0.0543 (0.255) |
0.776 (1.00) |
6p loss | 33 (7%) | 410 |
0.0215 (0.152) |
0.192 (0.562) |
0.733 (0.976) |
0.125 (0.434) |
0.937 (1.00) |
0.426 (0.787) |
0.37 (0.741) |
0.792 (1.00) |
1 (1.00) |
0.11 (0.406) |
0.948 (1.00) |
0.036 (0.197) |
9q loss | 50 (11%) | 393 |
0.599 (0.897) |
0.0716 (0.311) |
0.668 (0.936) |
0.113 (0.411) |
0.136 (0.451) |
0.0445 (0.223) |
0.654 (0.932) |
0.0444 (0.223) |
1 (1.00) |
0.477 (0.809) |
0.102 (0.384) |
0.609 (0.899) |
11q loss | 62 (14%) | 381 |
0.32 (0.691) |
0.413 (0.782) |
0.23 (0.611) |
0.238 (0.618) |
0.0545 (0.255) |
0.0149 (0.135) |
0.495 (0.819) |
1 (1.00) |
1 (1.00) |
0.422 (0.787) |
0.0434 (0.221) |
0.523 (0.837) |
12p loss | 46 (10%) | 397 |
0.191 (0.562) |
0.333 (0.701) |
0.415 (0.784) |
0.442 (0.793) |
0.0924 (0.363) |
0.161 (0.504) |
1 (1.00) |
0.0117 (0.116) |
0.281 (0.662) |
0.903 (1.00) |
0.0388 (0.204) |
0.881 (1.00) |
13q loss | 12 (3%) | 431 |
0.337 (0.704) |
1 (1.00) |
0.788 (1.00) |
0.454 (0.797) |
0.11 (0.406) |
0.621 (0.904) |
0.775 (1.00) |
0.178 (0.536) |
1 (1.00) |
0.817 (1.00) |
0.0131 (0.129) |
0.0201 (0.146) |
14q loss | 134 (30%) | 309 |
0.815 (1.00) |
0.349 (0.716) |
0.192 (0.562) |
0.33 (0.701) |
0.0927 (0.363) |
0.00437 (0.061) |
0.918 (1.00) |
6.16e-06 (0.0012) |
0.557 (0.865) |
0.642 (0.921) |
0.175 (0.532) |
0.93 (1.00) |
3p gain | 45 (10%) | 398 |
0.144 (0.472) |
0.0974 (0.371) |
0.0023 (0.0385) |
0.871 (1.00) |
0.23 (0.611) |
0.205 (0.58) |
0.639 (0.918) |
0.818 (1.00) |
1 (1.00) |
0.945 (1.00) |
0.127 (0.436) |
0.199 (0.572) |
3q gain | 64 (14%) | 379 |
0.154 (0.493) |
0.266 (0.647) |
0.0149 (0.135) |
0.62 (0.904) |
0.0764 (0.323) |
0.0977 (0.371) |
0.501 (0.822) |
0.427 (0.787) |
1 (1.00) |
0.9 (1.00) |
0.124 (0.432) |
0.233 (0.613) |
15q gain | 12 (3%) | 431 |
0.665 (0.936) |
0.293 (0.665) |
0.75 (0.986) |
0.509 (0.825) |
0.719 (0.967) |
0.111 (0.406) |
0.0764 (0.323) |
1 (1.00) |
1 (1.00) |
0.0494 (0.24) |
0.323 (0.694) |
0.306 (0.675) |
17p gain | 29 (7%) | 414 |
0.0698 (0.307) |
0.615 (0.904) |
0.479 (0.812) |
0.851 (1.00) |
0.33 (0.701) |
0.395 (0.757) |
0.702 (0.958) |
0.573 (0.874) |
1 (1.00) |
0.911 (1.00) |
0.783 (1.00) |
0.0509 (0.244) |
18q gain | 13 (3%) | 430 |
0.666 (0.936) |
0.0862 (0.349) |
0.45 (0.796) |
0.763 (0.997) |
0.298 (0.667) |
1 (1.00) |
0.582 (0.879) |
0.0214 (0.152) |
1 (1.00) |
1 (1.00) |
0.882 (1.00) |
0.388 (0.753) |
21q gain | 24 (5%) | 419 |
0.688 (0.951) |
0.00178 (0.0331) |
0.525 (0.837) |
0.12 (0.423) |
0.288 (0.665) |
0.509 (0.825) |
0.534 (0.841) |
0.222 (0.605) |
1 (1.00) |
0.429 (0.787) |
0.139 (0.46) |
0.596 (0.894) |
xp gain | 66 (15%) | 377 |
0.886 (1.00) |
0.661 (0.936) |
0.433 (0.79) |
0.00666 (0.083) |
0.637 (0.918) |
0.701 (0.958) |
0.23 (0.611) |
0.846 (1.00) |
0.384 (0.751) |
0.934 (1.00) |
0.667 (0.936) |
0.751 (0.986) |
xq gain | 76 (17%) | 367 |
0.606 (0.897) |
0.717 (0.966) |
0.151 (0.489) |
0.00823 (0.0909) |
0.895 (1.00) |
1 (1.00) |
0.377 (0.744) |
0.465 (0.801) |
0.432 (0.79) |
0.853 (1.00) |
0.851 (1.00) |
0.628 (0.911) |
9p loss | 51 (12%) | 392 |
0.98 (1.00) |
0.239 (0.618) |
0.944 (1.00) |
0.085 (0.347) |
0.289 (0.665) |
0.279 (0.66) |
0.235 (0.616) |
0.0295 (0.174) |
1 (1.00) |
0.488 (0.816) |
0.0965 (0.371) |
0.673 (0.94) |
10q loss | 71 (16%) | 372 |
0.703 (0.958) |
0.13 (0.445) |
0.149 (0.485) |
0.943 (1.00) |
0.207 (0.58) |
0.0385 (0.203) |
0.796 (1.00) |
0.19 (0.562) |
0.0682 (0.304) |
0.247 (0.626) |
0.124 (0.433) |
0.667 (0.936) |
11p loss | 51 (12%) | 392 |
0.395 (0.757) |
0.65 (0.928) |
0.481 (0.812) |
0.821 (1.00) |
0.0591 (0.268) |
0.0809 (0.335) |
0.767 (0.998) |
0.664 (0.936) |
1 (1.00) |
0.444 (0.793) |
0.0146 (0.135) |
0.491 (0.816) |
16q loss | 27 (6%) | 416 |
0.253 (0.632) |
0.0241 (0.163) |
0.567 (0.871) |
0.735 (0.976) |
0.703 (0.958) |
0.357 (0.724) |
0.693 (0.954) |
0.394 (0.757) |
1 (1.00) |
0.262 (0.641) |
0.615 (0.904) |
0.306 (0.675) |
1p gain | 34 (8%) | 409 |
0.854 (1.00) |
0.314 (0.685) |
0.884 (1.00) |
0.952 (1.00) |
0.636 (0.918) |
0.173 (0.528) |
0.724 (0.967) |
0.293 (0.665) |
0.213 (0.593) |
0.277 (0.66) |
0.242 (0.622) |
0.395 (0.757) |
2p gain | 79 (18%) | 364 |
0.456 (0.799) |
0.979 (1.00) |
0.435 (0.79) |
0.529 (0.837) |
0.114 (0.412) |
0.577 (0.876) |
0.804 (1.00) |
0.103 (0.386) |
0.446 (0.793) |
0.0759 (0.323) |
0.0694 (0.307) |
0.844 (1.00) |
5q gain | 42 (9%) | 401 |
0.501 (0.822) |
0.916 (1.00) |
0.422 (0.787) |
0.844 (1.00) |
0.297 (0.666) |
0.476 (0.809) |
0.52 (0.837) |
0.635 (0.918) |
1 (1.00) |
0.351 (0.716) |
0.974 (1.00) |
0.255 (0.635) |
8p gain | 130 (29%) | 313 |
0.549 (0.859) |
0.197 (0.568) |
0.657 (0.933) |
0.774 (1.00) |
0.52 (0.837) |
1 (1.00) |
0.917 (1.00) |
0.45 (0.796) |
0.207 (0.58) |
0.472 (0.807) |
0.467 (0.801) |
0.958 (1.00) |
12p gain | 93 (21%) | 350 |
0.232 (0.612) |
0.328 (0.701) |
0.118 (0.42) |
0.372 (0.741) |
0.287 (0.665) |
0.865 (1.00) |
0.907 (1.00) |
0.614 (0.904) |
1 (1.00) |
0.53 (0.837) |
0.133 (0.448) |
0.964 (1.00) |
17q gain | 79 (18%) | 364 |
0.123 (0.43) |
0.336 (0.701) |
0.116 (0.415) |
0.358 (0.725) |
0.131 (0.447) |
0.0624 (0.281) |
0.711 (0.964) |
0.208 (0.582) |
0.446 (0.793) |
0.295 (0.665) |
0.618 (0.904) |
0.734 (0.976) |
19p gain | 74 (17%) | 369 |
0.527 (0.837) |
0.896 (1.00) |
0.606 (0.897) |
0.811 (1.00) |
0.128 (0.44) |
0.558 (0.865) |
0.0753 (0.323) |
0.352 (0.716) |
0.423 (0.787) |
0.317 (0.685) |
0.933 (1.00) |
0.965 (1.00) |
19q gain | 83 (19%) | 360 |
0.863 (1.00) |
0.83 (1.00) |
0.757 (0.991) |
0.926 (1.00) |
0.191 (0.562) |
0.352 (0.716) |
0.223 (0.605) |
1 (1.00) |
0.464 (0.801) |
0.332 (0.701) |
0.825 (1.00) |
0.859 (1.00) |
22q gain | 13 (3%) | 430 |
0.528 (0.837) |
0.334 (0.701) |
0.465 (0.801) |
0.295 (0.665) |
0.924 (1.00) |
0.111 (0.406) |
0.582 (0.879) |
0.231 (0.611) |
0.0857 (0.348) |
0.304 (0.675) |
0.491 (0.816) |
0.795 (1.00) |
2p loss | 6 (1%) | 437 |
0.709 (0.963) |
0.689 (0.951) |
0.223 (0.605) |
0.845 (1.00) |
0.85 (1.00) |
0.595 (0.894) |
0.219 (0.603) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.521 (0.837) |
|
2q loss | 7 (2%) | 436 |
0.964 (1.00) |
0.663 (0.936) |
0.281 (0.662) |
1 (1.00) |
1 (1.00) |
0.604 (0.897) |
0.126 (0.434) |
0.601 (0.897) |
1 (1.00) |
1 (1.00) |
0.803 (1.00) |
|
3p loss | 52 (12%) | 391 |
0.404 (0.768) |
0.423 (0.787) |
0.251 (0.628) |
0.133 (0.448) |
0.0919 (0.363) |
0.0569 (0.263) |
1 (1.00) |
0.279 (0.66) |
1 (1.00) |
0.823 (1.00) |
0.0977 (0.371) |
0.781 (1.00) |
3q loss | 32 (7%) | 411 |
0.707 (0.962) |
0.605 (0.897) |
0.676 (0.941) |
0.497 (0.82) |
0.876 (1.00) |
0.186 (0.556) |
0.466 (0.801) |
0.6 (0.897) |
1 (1.00) |
0.864 (1.00) |
0.843 (1.00) |
0.594 (0.894) |
7q loss | 3 (1%) | 440 |
0.486 (0.816) |
0.141 (0.466) |
0.373 (0.741) |
0.684 (0.948) |
1 (1.00) |
1 (1.00) |
0.606 (0.897) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.507 (0.825) |
1 (1.00) |
16p loss | 30 (7%) | 413 |
0.155 (0.493) |
0.0768 (0.323) |
0.393 (0.757) |
0.531 (0.839) |
0.567 (0.871) |
0.249 (0.626) |
0.572 (0.874) |
0.275 (0.656) |
1 (1.00) |
0.181 (0.544) |
0.442 (0.793) |
0.3 (0.668) |
20p loss | 43 (10%) | 400 |
0.516 (0.834) |
0.443 (0.793) |
0.528 (0.837) |
0.909 (1.00) |
0.501 (0.822) |
0.816 (1.00) |
0.873 (1.00) |
0.488 (0.816) |
1 (1.00) |
1 (1.00) |
0.713 (0.964) |
0.806 (1.00) |
20q loss | 4 (1%) | 439 |
0.314 (0.685) |
0.244 (0.624) |
0.469 (0.802) |
0.776 (1.00) |
0.129 (0.443) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.162 (0.504) |
P value = 0.00355 (Fisher's exact test), Q value = 0.054
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
1Q GAIN MUTATED | 50 | 20 |
1Q GAIN WILD-TYPE | 272 | 42 |
P value = 0.0269 (Wilcoxon-test), Q value = 0.17
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
1Q GAIN MUTATED | 75 | 2.7 (4.4) |
1Q GAIN WILD-TYPE | 343 | 1.9 (4.5) |
P value = 0.0262 (Fisher's exact test), Q value = 0.17
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
2Q GAIN MUTATED | 34 | 19 | 21 |
2Q GAIN WILD-TYPE | 223 | 85 | 60 |
P value = 0.0209 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
2Q GAIN MUTATED | 72 | 2.5 (3.6) |
2Q GAIN WILD-TYPE | 346 | 2.0 (4.6) |
P value = 0.0023 (Fisher's exact test), Q value = 0.039
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
3P GAIN MUTATED | 6 | 1 | 2 | 9 | 1 | 0 | 3 | 4 | 2 | 6 | 5 | 1 | 2 |
3P GAIN WILD-TYPE | 68 | 0 | 26 | 122 | 7 | 1 | 18 | 8 | 54 | 33 | 38 | 17 | 0 |
P value = 0.0149 (Fisher's exact test), Q value = 0.14
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
3Q GAIN MUTATED | 8 | 1 | 4 | 13 | 1 | 0 | 4 | 5 | 6 | 7 | 7 | 3 | 2 |
3Q GAIN WILD-TYPE | 66 | 0 | 24 | 118 | 7 | 1 | 17 | 7 | 50 | 32 | 36 | 15 | 0 |
P value = 0.0279 (Fisher's exact test), Q value = 0.17
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
4P GAIN MUTATED | 3 | 4 | 5 |
4P GAIN WILD-TYPE | 254 | 100 | 76 |
P value = 0.0156 (Wilcoxon-test), Q value = 0.14
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
4P GAIN MUTATED | 12 | 3.4 (3.7) |
4P GAIN WILD-TYPE | 406 | 2.0 (4.5) |
P value = 0.00194 (Fisher's exact test), Q value = 0.034
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 11 | 54 | 211 |
4P GAIN MUTATED | 1 | 0 | 5 | 4 |
4P GAIN WILD-TYPE | 0 | 11 | 49 | 207 |
P value = 0.00845 (Fisher's exact test), Q value = 0.092
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
4Q GAIN MUTATED | 5 | 4 | 8 |
4Q GAIN WILD-TYPE | 252 | 100 | 73 |
P value = 0.00635 (Wilcoxon-test), Q value = 0.08
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
4Q GAIN MUTATED | 17 | 3.3 (3.3) |
4Q GAIN WILD-TYPE | 401 | 2.0 (4.5) |
P value = 0.0307 (Fisher's exact test), Q value = 0.18
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 11 | 54 | 211 |
4Q GAIN MUTATED | 1 | 0 | 4 | 7 |
4Q GAIN WILD-TYPE | 0 | 11 | 50 | 204 |
P value = 0.0486 (Fisher's exact test), Q value = 0.24
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
5P GAIN MUTATED | 30 | 20 | 17 |
5P GAIN WILD-TYPE | 227 | 84 | 64 |
P value = 0.031 (Wilcoxon-test), Q value = 0.18
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
5P GAIN MUTATED | 65 | 2.6 (3.8) |
5P GAIN WILD-TYPE | 353 | 2.0 (4.6) |
P value = 0.0173 (Fisher's exact test), Q value = 0.14
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
6P GAIN MUTATED | 42 | 18 | 25 |
6P GAIN WILD-TYPE | 215 | 86 | 56 |
P value = 0.00686 (Fisher's exact test), Q value = 0.083
nPatients | NO | YES |
---|---|---|
ALL | 3 | 440 |
6P GAIN MUTATED | 3 | 82 |
6P GAIN WILD-TYPE | 0 | 358 |
P value = 0.0225 (Wilcoxon-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
6P GAIN MUTATED | 83 | 3.1 (4.9) |
6P GAIN WILD-TYPE | 335 | 1.8 (4.3) |
P value = 0.0409 (Fisher's exact test), Q value = 0.21
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
6Q GAIN MUTATED | 11 | 0 | 2 | 17 | 2 | 0 | 5 | 6 | 9 | 10 | 7 | 6 | 1 |
6Q GAIN WILD-TYPE | 63 | 1 | 26 | 114 | 6 | 1 | 16 | 6 | 47 | 29 | 36 | 12 | 1 |
P value = 0.0231 (Fisher's exact test), Q value = 0.16
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
6Q GAIN MUTATED | 38 | 16 | 23 |
6Q GAIN WILD-TYPE | 219 | 88 | 58 |
P value = 0.00508 (Fisher's exact test), Q value = 0.069
nPatients | NO | YES |
---|---|---|
ALL | 3 | 440 |
6Q GAIN MUTATED | 3 | 74 |
6Q GAIN WILD-TYPE | 0 | 366 |
P value = 0.0361 (Wilcoxon-test), Q value = 0.2
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
6Q GAIN MUTATED | 75 | 3.1 (4.9) |
6Q GAIN WILD-TYPE | 343 | 1.9 (4.3) |
P value = 5e-05 (Fisher's exact test), Q value = 0.0044
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
7P GAIN MUTATED | 40 | 1 | 14 | 52 | 2 | 0 | 12 | 12 | 37 | 25 | 29 | 13 | 1 |
7P GAIN WILD-TYPE | 34 | 0 | 14 | 79 | 6 | 1 | 9 | 0 | 19 | 14 | 14 | 5 | 1 |
P value = 0.00019 (Fisher's exact test), Q value = 0.0085
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
7P GAIN MUTATED | 120 | 71 | 52 |
7P GAIN WILD-TYPE | 137 | 33 | 29 |
P value = 0.0254 (Fisher's exact test), Q value = 0.17
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
7P GAIN MUTATED | 166 | 42 |
7P GAIN WILD-TYPE | 156 | 20 |
P value = 0.0261 (Fisher's exact test), Q value = 0.17
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
7P GAIN MUTATED | 218 | 25 |
7P GAIN WILD-TYPE | 163 | 35 |
P value = 0.000494 (Wilcoxon-test), Q value = 0.015
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
7P GAIN MUTATED | 235 | 2.4 (4.8) |
7P GAIN WILD-TYPE | 183 | 1.7 (4.0) |
P value = 0.0178 (Fisher's exact test), Q value = 0.14
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
7Q GAIN MUTATED | 38 | 1 | 13 | 48 | 2 | 0 | 11 | 8 | 33 | 22 | 26 | 13 | 1 |
7Q GAIN WILD-TYPE | 36 | 0 | 15 | 83 | 6 | 1 | 10 | 4 | 23 | 17 | 17 | 5 | 1 |
P value = 0.0159 (Fisher's exact test), Q value = 0.14
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
7Q GAIN MUTATED | 113 | 60 | 47 |
7Q GAIN WILD-TYPE | 144 | 44 | 34 |
P value = 0.018 (Fisher's exact test), Q value = 0.14
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
7Q GAIN MUTATED | 148 | 39 |
7Q GAIN WILD-TYPE | 174 | 23 |
P value = 0.0114 (Wilcoxon-test), Q value = 0.11
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
7Q GAIN MUTATED | 214 | 2.4 (4.8) |
7Q GAIN WILD-TYPE | 204 | 1.8 (4.0) |
P value = 0.018 (Wilcoxon-test), Q value = 0.14
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 441 | 67.0 (13.0) |
8Q GAIN MUTATED | 222 | 65.7 (12.5) |
8Q GAIN WILD-TYPE | 219 | 68.2 (13.4) |
P value = 0.0519 (Fisher's exact test), Q value = 0.25
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
8Q GAIN MUTATED | 199 | 23 |
8Q GAIN WILD-TYPE | 182 | 37 |
P value = 0.0114 (logrank test), Q value = 0.11
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 430 | 93 | 0.0 - 140.4 (20.4) |
9P GAIN MUTATED | 77 | 25 | 0.0 - 98.2 (16.4) |
9P GAIN WILD-TYPE | 353 | 68 | 0.0 - 140.4 (21.4) |
P value = 0.0239 (Fisher's exact test), Q value = 0.16
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
9P GAIN MUTATED | 9 | 1 | 6 | 18 | 2 | 0 | 1 | 4 | 8 | 13 | 8 | 5 | 1 |
9P GAIN WILD-TYPE | 65 | 0 | 22 | 113 | 6 | 1 | 20 | 8 | 48 | 26 | 35 | 13 | 1 |
P value = 0.0171 (Fisher's exact test), Q value = 0.14
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
9P GAIN MUTATED | 61 | 18 |
9P GAIN WILD-TYPE | 320 | 42 |
P value = 0.0278 (Fisher's exact test), Q value = 0.17
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 11 | 54 | 211 |
9P GAIN MUTATED | 1 | 1 | 16 | 35 |
9P GAIN WILD-TYPE | 0 | 10 | 38 | 176 |
P value = 0.0135 (logrank test), Q value = 0.13
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 430 | 93 | 0.0 - 140.4 (20.4) |
9Q GAIN MUTATED | 69 | 23 | 0.0 - 98.2 (15.0) |
9Q GAIN WILD-TYPE | 361 | 70 | 0.0 - 140.4 (21.4) |
P value = 0.0228 (Fisher's exact test), Q value = 0.16
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
9Q GAIN MUTATED | 55 | 16 |
9Q GAIN WILD-TYPE | 326 | 44 |
P value = 0.0238 (logrank test), Q value = 0.16
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 430 | 93 | 0.0 - 140.4 (20.4) |
10P GAIN MUTATED | 32 | 11 | 0.0 - 91.8 (16.2) |
10P GAIN WILD-TYPE | 398 | 82 | 0.0 - 140.4 (21.3) |
P value = 0.0469 (Fisher's exact test), Q value = 0.23
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
10P GAIN MUTATED | 16 | 7 | 12 |
10P GAIN WILD-TYPE | 241 | 97 | 69 |
P value = 0.0529 (Wilcoxon-test), Q value = 0.25
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
10P GAIN MUTATED | 33 | 3.5 (5.3) |
10P GAIN WILD-TYPE | 385 | 2.0 (4.4) |
P value = 0.0347 (Wilcoxon-test), Q value = 0.19
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 441 | 67.0 (13.0) |
10Q GAIN MUTATED | 21 | 61.0 (12.8) |
10Q GAIN WILD-TYPE | 420 | 67.2 (13.0) |
P value = 0.0267 (Wilcoxon-test), Q value = 0.17
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
10Q GAIN MUTATED | 19 | 3.7 (4.5) |
10Q GAIN WILD-TYPE | 399 | 2.0 (4.4) |
P value = 0.0411 (Fisher's exact test), Q value = 0.21
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 11 | 54 | 211 |
10Q GAIN MUTATED | 1 | 1 | 4 | 10 |
10Q GAIN WILD-TYPE | 0 | 10 | 50 | 201 |
P value = 0.00427 (Wilcoxon-test), Q value = 0.061
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 441 | 67.0 (13.0) |
11P GAIN MUTATED | 52 | 61.9 (13.2) |
11P GAIN WILD-TYPE | 389 | 67.6 (12.8) |
P value = 0.00542 (Fisher's exact test), Q value = 0.07
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
11P GAIN MUTATED | 6 | 0 | 2 | 7 | 1 | 0 | 0 | 4 | 10 | 7 | 8 | 5 | 0 |
11P GAIN WILD-TYPE | 68 | 1 | 26 | 124 | 7 | 1 | 21 | 8 | 46 | 32 | 35 | 13 | 2 |
P value = 0.011 (Fisher's exact test), Q value = 0.11
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
11P GAIN MUTATED | 20 | 16 | 15 |
11P GAIN WILD-TYPE | 237 | 88 | 66 |
P value = 0.0138 (Fisher's exact test), Q value = 0.13
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
11P GAIN MUTATED | 30 | 13 |
11P GAIN WILD-TYPE | 292 | 49 |
P value = 0.00762 (Fisher's exact test), Q value = 0.089
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
11P GAIN MUTATED | 50 | 1 |
11P GAIN WILD-TYPE | 331 | 59 |
P value = 0.0376 (Fisher's exact test), Q value = 0.2
nPatients | NO | YES |
---|---|---|
ALL | 3 | 440 |
11P GAIN MUTATED | 2 | 50 |
11P GAIN WILD-TYPE | 1 | 390 |
P value = 0.00684 (Wilcoxon-test), Q value = 0.083
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
11P GAIN MUTATED | 51 | 3.5 (7.5) |
11P GAIN WILD-TYPE | 367 | 1.9 (3.8) |
P value = 0.000225 (Wilcoxon-test), Q value = 0.0091
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 441 | 67.0 (13.0) |
11Q GAIN MUTATED | 50 | 60.3 (13.2) |
11Q GAIN WILD-TYPE | 391 | 67.8 (12.8) |
P value = 0.00528 (Fisher's exact test), Q value = 0.07
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
11Q GAIN MUTATED | 5 | 0 | 3 | 7 | 1 | 0 | 0 | 4 | 10 | 8 | 5 | 5 | 0 |
11Q GAIN WILD-TYPE | 69 | 1 | 25 | 124 | 7 | 1 | 21 | 8 | 46 | 31 | 38 | 13 | 2 |
P value = 0.00806 (Fisher's exact test), Q value = 0.091
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
11Q GAIN MUTATED | 19 | 17 | 14 |
11Q GAIN WILD-TYPE | 238 | 87 | 67 |
P value = 0.00742 (Fisher's exact test), Q value = 0.088
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
11Q GAIN MUTATED | 49 | 1 |
11Q GAIN WILD-TYPE | 332 | 59 |
P value = 0.0348 (Fisher's exact test), Q value = 0.19
nPatients | NO | YES |
---|---|---|
ALL | 3 | 440 |
11Q GAIN MUTATED | 2 | 48 |
11Q GAIN WILD-TYPE | 1 | 392 |
P value = 0.00911 (Wilcoxon-test), Q value = 0.097
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
11Q GAIN MUTATED | 49 | 3.4 (7.5) |
11Q GAIN WILD-TYPE | 369 | 1.9 (3.9) |
P value = 0.0155 (Fisher's exact test), Q value = 0.14
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
12Q GAIN MUTATED | 12 | 1 | 7 | 36 | 1 | 0 | 3 | 5 | 6 | 7 | 3 | 6 | 0 |
12Q GAIN WILD-TYPE | 62 | 0 | 21 | 95 | 7 | 1 | 18 | 7 | 50 | 32 | 40 | 12 | 2 |
P value = 0.0267 (Wilcoxon-test), Q value = 0.17
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
12Q GAIN MUTATED | 83 | 1.1 (2.0) |
12Q GAIN WILD-TYPE | 335 | 2.3 (4.8) |
P value = 0.00053 (Fisher's exact test), Q value = 0.016
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
13Q GAIN MUTATED | 41 | 0 | 14 | 62 | 2 | 1 | 11 | 11 | 34 | 24 | 34 | 14 | 0 |
13Q GAIN WILD-TYPE | 33 | 1 | 14 | 69 | 6 | 0 | 10 | 1 | 22 | 15 | 9 | 4 | 2 |
P value = 0.00324 (Fisher's exact test), Q value = 0.05
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
13Q GAIN MUTATED | 130 | 70 | 53 |
13Q GAIN WILD-TYPE | 127 | 34 | 28 |
P value = 0.00193 (Fisher's exact test), Q value = 0.034
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
13Q GAIN MUTATED | 176 | 47 |
13Q GAIN WILD-TYPE | 146 | 15 |
P value = 2.08e-06 (Fisher's exact test), Q value = 0.00051
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
13Q GAIN MUTATED | 235 | 17 |
13Q GAIN WILD-TYPE | 146 | 43 |
P value = 0.0308 (Fisher's exact test), Q value = 0.18
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 316 | 3 | 24 | 25 |
13Q GAIN MUTATED | 176 | 1 | 18 | 9 |
13Q GAIN WILD-TYPE | 140 | 2 | 6 | 16 |
P value = 0.0101 (Wilcoxon-test), Q value = 0.11
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
13Q GAIN MUTATED | 245 | 2.2 (3.9) |
13Q GAIN WILD-TYPE | 173 | 1.9 (5.2) |
P value = 0.0391 (Fisher's exact test), Q value = 0.2
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
14Q GAIN MUTATED | 26 | 9 |
14Q GAIN WILD-TYPE | 355 | 51 |
P value = 0.0296 (Fisher's exact test), Q value = 0.17
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 11 | 54 | 211 |
14Q GAIN MUTATED | 1 | 2 | 2 | 19 |
14Q GAIN WILD-TYPE | 0 | 9 | 52 | 192 |
P value = 0.0494 (Fisher's exact test), Q value = 0.24
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 316 | 3 | 24 | 25 |
15Q GAIN MUTATED | 7 | 1 | 1 | 1 |
15Q GAIN WILD-TYPE | 309 | 2 | 23 | 24 |
P value = 0.00558 (Fisher's exact test), Q value = 0.071
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
16P GAIN MUTATED | 12 | 1 | 3 | 25 | 1 | 0 | 6 | 8 | 14 | 14 | 13 | 4 | 1 |
16P GAIN WILD-TYPE | 62 | 0 | 25 | 106 | 7 | 1 | 15 | 4 | 42 | 25 | 30 | 14 | 1 |
P value = 0.00387 (Fisher's exact test), Q value = 0.057
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
16P GAIN MUTATED | 47 | 32 | 27 |
16P GAIN WILD-TYPE | 210 | 72 | 54 |
P value = 0.00541 (Fisher's exact test), Q value = 0.07
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
16P GAIN MUTATED | 99 | 6 |
16P GAIN WILD-TYPE | 282 | 54 |
P value = 0.00244 (Wilcoxon-test), Q value = 0.039
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
16P GAIN MUTATED | 101 | 2.6 (4.1) |
16P GAIN WILD-TYPE | 317 | 1.9 (4.6) |
P value = 0.00144 (Fisher's exact test), Q value = 0.03
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
16Q GAIN MUTATED | 12 | 1 | 3 | 23 | 1 | 0 | 6 | 9 | 17 | 12 | 11 | 4 | 1 |
16Q GAIN WILD-TYPE | 62 | 0 | 25 | 108 | 7 | 1 | 15 | 3 | 39 | 27 | 32 | 14 | 1 |
P value = 0.00176 (Fisher's exact test), Q value = 0.033
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
16Q GAIN MUTATED | 45 | 33 | 26 |
16Q GAIN WILD-TYPE | 212 | 71 | 55 |
P value = 0.00807 (Fisher's exact test), Q value = 0.091
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
16Q GAIN MUTATED | 97 | 6 |
16Q GAIN WILD-TYPE | 284 | 54 |
P value = 0.00236 (Wilcoxon-test), Q value = 0.039
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
16Q GAIN MUTATED | 100 | 2.6 (4.1) |
16Q GAIN WILD-TYPE | 318 | 1.9 (4.5) |
P value = 0.0509 (Fisher's exact test), Q value = 0.24
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 11 | 54 | 211 |
17P GAIN MUTATED | 1 | 1 | 6 | 13 |
17P GAIN WILD-TYPE | 0 | 10 | 48 | 198 |
P value = 0.0309 (Fisher's exact test), Q value = 0.18
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
18P GAIN MUTATED | 10 | 3 | 9 |
18P GAIN WILD-TYPE | 247 | 101 | 72 |
P value = 0.0197 (Fisher's exact test), Q value = 0.15
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
18P GAIN MUTATED | 15 | 7 |
18P GAIN WILD-TYPE | 366 | 53 |
P value = 0.0214 (Fisher's exact test), Q value = 0.15
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
18Q GAIN MUTATED | 8 | 5 |
18Q GAIN WILD-TYPE | 373 | 55 |
P value = 0.00016 (Fisher's exact test), Q value = 0.0082
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
20P GAIN MUTATED | 41 | 1 | 13 | 61 | 3 | 0 | 9 | 12 | 25 | 21 | 33 | 14 | 1 |
20P GAIN WILD-TYPE | 33 | 0 | 15 | 70 | 5 | 1 | 12 | 0 | 31 | 18 | 10 | 4 | 1 |
P value = 0.000273 (Fisher's exact test), Q value = 0.0098
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
20P GAIN MUTATED | 164 | 47 |
20P GAIN WILD-TYPE | 158 | 15 |
P value = 0.000735 (Fisher's exact test), Q value = 0.019
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
20P GAIN MUTATED | 218 | 20 |
20P GAIN WILD-TYPE | 163 | 40 |
P value = 0.00184 (Fisher's exact test), Q value = 0.033
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
20Q GAIN MUTATED | 53 | 1 | 16 | 84 | 3 | 1 | 13 | 12 | 39 | 31 | 38 | 16 | 1 |
20Q GAIN WILD-TYPE | 21 | 0 | 12 | 47 | 5 | 0 | 8 | 0 | 17 | 8 | 5 | 2 | 1 |
P value = 0.0134 (Fisher's exact test), Q value = 0.13
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
20Q GAIN MUTATED | 169 | 83 | 62 |
20Q GAIN WILD-TYPE | 88 | 21 | 19 |
P value = 0.00208 (Fisher's exact test), Q value = 0.035
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
20Q GAIN MUTATED | 220 | 54 |
20Q GAIN WILD-TYPE | 102 | 8 |
P value = 2.1e-06 (Fisher's exact test), Q value = 0.00051
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
20Q GAIN MUTATED | 287 | 26 |
20Q GAIN WILD-TYPE | 94 | 34 |
P value = 0.0174 (Wilcoxon-test), Q value = 0.14
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
20Q GAIN MUTATED | 300 | 2.3 (4.8) |
20Q GAIN WILD-TYPE | 118 | 1.5 (3.4) |
P value = 0.00178 (Wilcoxon-test), Q value = 0.033
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 441 | 67.0 (13.0) |
21Q GAIN MUTATED | 24 | 59.8 (10.0) |
21Q GAIN WILD-TYPE | 417 | 67.4 (13.0) |
P value = 0.00666 (Fisher's exact test), Q value = 0.083
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 11 | 78 | 301 | 52 |
XP GAIN MUTATED | 0 | 14 | 51 | 1 |
XP GAIN WILD-TYPE | 11 | 64 | 250 | 51 |
P value = 0.00823 (Fisher's exact test), Q value = 0.091
nPatients | T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 11 | 78 | 301 | 52 |
XQ GAIN MUTATED | 0 | 15 | 59 | 2 |
XQ GAIN WILD-TYPE | 11 | 63 | 242 | 50 |
P value = 0.0171 (logrank test), Q value = 0.14
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 430 | 93 | 0.0 - 140.4 (20.4) |
1P LOSS MUTATED | 88 | 25 | 0.2 - 92.8 (16.7) |
1P LOSS WILD-TYPE | 342 | 68 | 0.0 - 140.4 (21.0) |
P value = 0.017 (Fisher's exact test), Q value = 0.14
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
1P LOSS MUTATED | 9 | 0 | 3 | 23 | 0 | 0 | 5 | 3 | 11 | 11 | 19 | 4 | 0 |
1P LOSS WILD-TYPE | 65 | 1 | 25 | 108 | 8 | 1 | 16 | 9 | 45 | 28 | 24 | 14 | 2 |
P value = 0.00069 (Fisher's exact test), Q value = 0.019
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
1P LOSS MUTATED | 39 | 25 | 28 |
1P LOSS WILD-TYPE | 218 | 79 | 53 |
P value = 0.00109 (Fisher's exact test), Q value = 0.024
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
1P LOSS MUTATED | 57 | 23 |
1P LOSS WILD-TYPE | 265 | 39 |
P value = 0.000257 (Wilcoxon-test), Q value = 0.0096
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
1P LOSS MUTATED | 87 | 3.7 (6.9) |
1P LOSS WILD-TYPE | 331 | 1.7 (3.5) |
P value = 0.0284 (logrank test), Q value = 0.17
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 430 | 93 | 0.0 - 140.4 (20.4) |
1Q LOSS MUTATED | 51 | 14 | 0.2 - 91.8 (13.4) |
1Q LOSS WILD-TYPE | 379 | 79 | 0.0 - 140.4 (21.4) |
P value = 0.0252 (Fisher's exact test), Q value = 0.17
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
1Q LOSS MUTATED | 24 | 12 | 17 |
1Q LOSS WILD-TYPE | 233 | 92 | 64 |
P value = 0.0475 (Fisher's exact test), Q value = 0.23
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
1Q LOSS MUTATED | 32 | 12 |
1Q LOSS WILD-TYPE | 290 | 50 |
P value = 0.0145 (Wilcoxon-test), Q value = 0.13
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
1Q LOSS MUTATED | 50 | 3.4 (4.7) |
1Q LOSS WILD-TYPE | 368 | 1.9 (4.4) |
P value = 0.0473 (logrank test), Q value = 0.23
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 430 | 93 | 0.0 - 140.4 (20.4) |
4P LOSS MUTATED | 127 | 33 | 0.2 - 140.4 (20.3) |
4P LOSS WILD-TYPE | 303 | 60 | 0.0 - 139.2 (20.4) |
P value = 0.00248 (Fisher's exact test), Q value = 0.039
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
4P LOSS MUTATED | 16 | 0 | 4 | 33 | 2 | 0 | 6 | 6 | 14 | 14 | 25 | 7 | 1 |
4P LOSS WILD-TYPE | 58 | 1 | 24 | 98 | 6 | 1 | 15 | 6 | 42 | 25 | 18 | 11 | 1 |
P value = 9e-04 (Fisher's exact test), Q value = 0.021
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
4P LOSS MUTATED | 60 | 37 | 35 |
4P LOSS WILD-TYPE | 197 | 67 | 46 |
P value = 1.38e-05 (Fisher's exact test), Q value = 0.0019
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
4P LOSS MUTATED | 79 | 33 |
4P LOSS WILD-TYPE | 243 | 29 |
P value = 0.0218 (Fisher's exact test), Q value = 0.15
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
4P LOSS MUTATED | 121 | 10 |
4P LOSS WILD-TYPE | 260 | 50 |
P value = 0.026 (Fisher's exact test), Q value = 0.17
nPatients | NO | YES |
---|---|---|
ALL | 3 | 440 |
4P LOSS MUTATED | 3 | 129 |
4P LOSS WILD-TYPE | 0 | 311 |
P value = 0.0285 (Fisher's exact test), Q value = 0.17
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 316 | 3 | 24 | 25 |
4P LOSS MUTATED | 90 | 0 | 13 | 5 |
4P LOSS WILD-TYPE | 226 | 3 | 11 | 20 |
P value = 0.00044 (Wilcoxon-test), Q value = 0.015
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
4P LOSS MUTATED | 127 | 3.0 (4.7) |
4P LOSS WILD-TYPE | 291 | 1.7 (4.3) |
P value = 0.029 (logrank test), Q value = 0.17
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 430 | 93 | 0.0 - 140.4 (20.4) |
4Q LOSS MUTATED | 118 | 32 | 0.2 - 140.4 (20.2) |
4Q LOSS WILD-TYPE | 312 | 61 | 0.0 - 139.2 (20.5) |
P value = 0.0152 (Fisher's exact test), Q value = 0.14
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
4Q LOSS MUTATED | 13 | 0 | 4 | 31 | 1 | 0 | 5 | 6 | 16 | 16 | 20 | 6 | 0 |
4Q LOSS WILD-TYPE | 61 | 1 | 24 | 100 | 7 | 1 | 16 | 6 | 40 | 23 | 23 | 12 | 2 |
P value = 0.00091 (Fisher's exact test), Q value = 0.021
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
4Q LOSS MUTATED | 53 | 37 | 31 |
4Q LOSS WILD-TYPE | 204 | 67 | 50 |
P value = 0.0044 (Fisher's exact test), Q value = 0.061
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
4Q LOSS MUTATED | 76 | 26 |
4Q LOSS WILD-TYPE | 246 | 36 |
P value = 0.02 (Fisher's exact test), Q value = 0.15
nPatients | NO | YES |
---|---|---|
ALL | 3 | 440 |
4Q LOSS MUTATED | 3 | 118 |
4Q LOSS WILD-TYPE | 0 | 322 |
P value = 0.000465 (Wilcoxon-test), Q value = 0.015
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
4Q LOSS MUTATED | 116 | 3.0 (4.8) |
4Q LOSS WILD-TYPE | 302 | 1.7 (4.3) |
P value = 0.00952 (Fisher's exact test), Q value = 0.1
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
5P LOSS MUTATED | 9 | 0 | 3 | 8 | 0 | 1 | 2 | 4 | 9 | 8 | 5 | 6 | 0 |
5P LOSS WILD-TYPE | 65 | 1 | 25 | 123 | 8 | 0 | 19 | 8 | 47 | 31 | 38 | 12 | 2 |
P value = 0.0257 (Fisher's exact test), Q value = 0.17
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
5P LOSS MUTATED | 24 | 19 | 14 |
5P LOSS WILD-TYPE | 233 | 85 | 67 |
P value = 0.0448 (Fisher's exact test), Q value = 0.22
nPatients | NO | YES |
---|---|---|
ALL | 3 | 440 |
5P LOSS MUTATED | 2 | 55 |
5P LOSS WILD-TYPE | 1 | 385 |
P value = 0.019 (Wilcoxon-test), Q value = 0.14
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
5P LOSS MUTATED | 55 | 3.3 (6.0) |
5P LOSS WILD-TYPE | 363 | 1.9 (4.2) |
P value = 0.0366 (logrank test), Q value = 0.2
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 430 | 93 | 0.0 - 140.4 (20.4) |
5Q LOSS MUTATED | 74 | 22 | 0.2 - 91.8 (20.9) |
5Q LOSS WILD-TYPE | 356 | 71 | 0.0 - 140.4 (20.4) |
P value = 0.0341 (Fisher's exact test), Q value = 0.19
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
5Q LOSS MUTATED | 10 | 0 | 3 | 14 | 0 | 0 | 3 | 4 | 10 | 13 | 10 | 6 | 0 |
5Q LOSS WILD-TYPE | 64 | 1 | 25 | 117 | 8 | 1 | 18 | 8 | 46 | 26 | 33 | 12 | 2 |
P value = 0.00107 (Fisher's exact test), Q value = 0.024
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
5Q LOSS MUTATED | 32 | 19 | 25 |
5Q LOSS WILD-TYPE | 225 | 85 | 56 |
P value = 0.0364 (Fisher's exact test), Q value = 0.2
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
5Q LOSS MUTATED | 46 | 16 |
5Q LOSS WILD-TYPE | 276 | 46 |
P value = 0.000192 (Wilcoxon-test), Q value = 0.0085
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
5Q LOSS MUTATED | 72 | 3.7 (5.7) |
5Q LOSS WILD-TYPE | 346 | 1.7 (4.1) |
P value = 0.0215 (logrank test), Q value = 0.15
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 430 | 93 | 0.0 - 140.4 (20.4) |
6P LOSS MUTATED | 32 | 10 | 2.0 - 45.4 (17.9) |
6P LOSS WILD-TYPE | 398 | 83 | 0.0 - 140.4 (21.1) |
P value = 0.036 (Fisher's exact test), Q value = 0.2
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 11 | 54 | 211 |
6P LOSS MUTATED | 0 | 3 | 1 | 17 |
6P LOSS WILD-TYPE | 1 | 8 | 53 | 194 |
P value = 0.0107 (logrank test), Q value = 0.11
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 430 | 93 | 0.0 - 140.4 (20.4) |
6Q LOSS MUTATED | 44 | 13 | 0.5 - 61.0 (14.5) |
6Q LOSS WILD-TYPE | 386 | 80 | 0.0 - 140.4 (21.6) |
P value = 0.0499 (Fisher's exact test), Q value = 0.24
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
6Q LOSS MUTATED | 20 | 11 | 14 |
6Q LOSS WILD-TYPE | 237 | 93 | 67 |
P value = 0.00701 (Wilcoxon-test), Q value = 0.084
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
6Q LOSS MUTATED | 40 | 3.2 (4.3) |
6Q LOSS WILD-TYPE | 378 | 2.0 (4.5) |
P value = 0.0161 (Fisher's exact test), Q value = 0.14
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 11 | 54 | 211 |
6Q LOSS MUTATED | 1 | 3 | 3 | 19 |
6Q LOSS WILD-TYPE | 0 | 8 | 51 | 192 |
P value = 0.0181 (Fisher's exact test), Q value = 0.14
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
8P LOSS MUTATED | 16 | 0 | 6 | 34 | 2 | 0 | 9 | 6 | 16 | 15 | 22 | 9 | 1 |
8P LOSS WILD-TYPE | 58 | 1 | 22 | 97 | 6 | 1 | 12 | 6 | 40 | 24 | 21 | 9 | 1 |
P value = 0.00163 (Fisher's exact test), Q value = 0.032
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
8P LOSS MUTATED | 65 | 37 | 37 |
8P LOSS WILD-TYPE | 192 | 67 | 44 |
P value = 0.000547 (Fisher's exact test), Q value = 0.016
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
8P LOSS MUTATED | 91 | 32 |
8P LOSS WILD-TYPE | 231 | 30 |
P value = 0.0509 (Fisher's exact test), Q value = 0.24
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
8P LOSS MUTATED | 126 | 12 |
8P LOSS WILD-TYPE | 255 | 48 |
P value = 0.00065 (Wilcoxon-test), Q value = 0.018
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
8P LOSS MUTATED | 134 | 3.0 (5.8) |
8P LOSS WILD-TYPE | 284 | 1.7 (3.6) |
P value = 0.052 (Fisher's exact test), Q value = 0.25
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
8Q LOSS MUTATED | 1 | 0 | 1 | 8 | 2 | 0 | 0 | 1 | 0 | 3 | 5 | 1 | 0 |
8Q LOSS WILD-TYPE | 73 | 1 | 27 | 123 | 6 | 1 | 21 | 11 | 56 | 36 | 38 | 17 | 2 |
P value = 0.0174 (Fisher's exact test), Q value = 0.14
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
8Q LOSS MUTATED | 15 | 1 | 8 |
8Q LOSS WILD-TYPE | 242 | 103 | 73 |
P value = 0.0298 (Fisher's exact test), Q value = 0.17
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
8Q LOSS MUTATED | 10 | 6 |
8Q LOSS WILD-TYPE | 312 | 56 |
P value = 0.0295 (Fisher's exact test), Q value = 0.17
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
9P LOSS MUTATED | 49 | 2 |
9P LOSS WILD-TYPE | 332 | 58 |
P value = 0.0445 (Fisher's exact test), Q value = 0.22
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
9Q LOSS MUTATED | 31 | 12 |
9Q LOSS WILD-TYPE | 291 | 50 |
P value = 0.0444 (Fisher's exact test), Q value = 0.22
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
9Q LOSS MUTATED | 47 | 2 |
9Q LOSS WILD-TYPE | 334 | 58 |
P value = 0.0347 (Fisher's exact test), Q value = 0.19
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
10P LOSS MUTATED | 10 | 0 | 5 | 11 | 0 | 1 | 2 | 3 | 9 | 8 | 12 | 3 | 1 |
10P LOSS WILD-TYPE | 64 | 1 | 23 | 120 | 8 | 0 | 19 | 9 | 47 | 31 | 31 | 15 | 1 |
P value = 0.0184 (Fisher's exact test), Q value = 0.14
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
10P LOSS MUTATED | 42 | 16 |
10P LOSS WILD-TYPE | 280 | 46 |
P value = 0.0318 (Wilcoxon-test), Q value = 0.18
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
10P LOSS MUTATED | 64 | 2.4 (3.4) |
10P LOSS WILD-TYPE | 354 | 2.0 (4.6) |
P value = 0.0385 (Fisher's exact test), Q value = 0.2
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
10Q LOSS MUTATED | 47 | 16 |
10Q LOSS WILD-TYPE | 275 | 46 |
P value = 0.0146 (Wilcoxon-test), Q value = 0.13
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
11P LOSS MUTATED | 48 | 2.9 (4.6) |
11P LOSS WILD-TYPE | 370 | 2.0 (4.4) |
P value = 0.0149 (Fisher's exact test), Q value = 0.14
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
11Q LOSS MUTATED | 38 | 15 |
11Q LOSS WILD-TYPE | 284 | 47 |
P value = 0.0434 (Wilcoxon-test), Q value = 0.22
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
11Q LOSS MUTATED | 59 | 2.5 (4.3) |
11Q LOSS WILD-TYPE | 359 | 2.0 (4.5) |
P value = 0.0117 (Fisher's exact test), Q value = 0.12
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
12P LOSS MUTATED | 45 | 1 |
12P LOSS WILD-TYPE | 336 | 59 |
P value = 0.0388 (Wilcoxon-test), Q value = 0.2
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
12P LOSS MUTATED | 44 | 2.5 (3.7) |
12P LOSS WILD-TYPE | 374 | 2.0 (4.5) |
P value = 0.0374 (Fisher's exact test), Q value = 0.2
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
12Q LOSS MUTATED | 20 | 15 | 13 |
12Q LOSS WILD-TYPE | 237 | 89 | 68 |
P value = 0.0442 (Fisher's exact test), Q value = 0.22
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
12Q LOSS MUTATED | 46 | 2 |
12Q LOSS WILD-TYPE | 335 | 58 |
P value = 0.0137 (Wilcoxon-test), Q value = 0.13
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
12Q LOSS MUTATED | 45 | 2.7 (3.8) |
12Q LOSS WILD-TYPE | 373 | 2.0 (4.5) |
P value = 0.0131 (Wilcoxon-test), Q value = 0.13
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
13Q LOSS MUTATED | 9 | 10.6 (15.8) |
13Q LOSS WILD-TYPE | 409 | 1.9 (3.7) |
P value = 0.0201 (Fisher's exact test), Q value = 0.15
nPatients | AMERICAN INDIAN OR ALASKA NATIVE | ASIAN | BLACK OR AFRICAN AMERICAN | WHITE |
---|---|---|---|---|
ALL | 1 | 11 | 54 | 211 |
13Q LOSS MUTATED | 1 | 1 | 1 | 6 |
13Q LOSS WILD-TYPE | 0 | 10 | 53 | 205 |
P value = 0.00437 (Fisher's exact test), Q value = 0.061
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
14Q LOSS MUTATED | 90 | 29 |
14Q LOSS WILD-TYPE | 232 | 33 |
P value = 6.16e-06 (Fisher's exact test), Q value = 0.0012
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
14Q LOSS MUTATED | 128 | 4 |
14Q LOSS WILD-TYPE | 253 | 56 |
P value = 0.0284 (Fisher's exact test), Q value = 0.17
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
15Q LOSS MUTATED | 23 | 0 | 6 | 37 | 2 | 0 | 5 | 7 | 18 | 18 | 22 | 10 | 1 |
15Q LOSS WILD-TYPE | 51 | 1 | 22 | 94 | 6 | 1 | 16 | 5 | 38 | 21 | 21 | 8 | 1 |
P value = 0.0315 (Fisher's exact test), Q value = 0.18
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
15Q LOSS MUTATED | 76 | 43 | 34 |
15Q LOSS WILD-TYPE | 181 | 61 | 47 |
P value = 0.00116 (Fisher's exact test), Q value = 0.025
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
15Q LOSS MUTATED | 99 | 33 |
15Q LOSS WILD-TYPE | 223 | 29 |
P value = 0.0284 (Fisher's exact test), Q value = 0.17
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
15Q LOSS MUTATED | 138 | 13 |
15Q LOSS WILD-TYPE | 243 | 47 |
P value = 0.0407 (Fisher's exact test), Q value = 0.21
nPatients | NO | YES |
---|---|---|
ALL | 3 | 440 |
15Q LOSS MUTATED | 3 | 150 |
15Q LOSS WILD-TYPE | 0 | 290 |
P value = 0.0197 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
15Q LOSS MUTATED | 145 | 2.3 (3.8) |
15Q LOSS WILD-TYPE | 273 | 1.9 (4.8) |
P value = 0.0241 (Wilcoxon-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 441 | 67.0 (13.0) |
16Q LOSS MUTATED | 27 | 62.0 (11.8) |
16Q LOSS WILD-TYPE | 414 | 67.3 (13.0) |
P value = 1e-04 (Fisher's exact test), Q value = 0.0075
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
17P LOSS MUTATED | 32 | 0 | 13 | 54 | 1 | 1 | 11 | 10 | 30 | 26 | 32 | 12 | 2 |
17P LOSS WILD-TYPE | 42 | 1 | 15 | 77 | 7 | 0 | 10 | 2 | 26 | 13 | 11 | 6 | 0 |
P value = 0.00012 (Fisher's exact test), Q value = 0.0078
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
17P LOSS MUTATED | 112 | 63 | 54 |
17P LOSS WILD-TYPE | 145 | 41 | 27 |
P value = 0.000257 (Fisher's exact test), Q value = 0.0096
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
17P LOSS MUTATED | 156 | 46 |
17P LOSS WILD-TYPE | 166 | 16 |
P value = 1.11e-05 (Fisher's exact test), Q value = 0.0018
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
17P LOSS MUTATED | 213 | 15 |
17P LOSS WILD-TYPE | 168 | 45 |
P value = 0.0376 (Fisher's exact test), Q value = 0.2
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 316 | 3 | 24 | 25 |
17P LOSS MUTATED | 159 | 1 | 17 | 8 |
17P LOSS WILD-TYPE | 157 | 2 | 7 | 17 |
P value = 3.03e-05 (Wilcoxon-test), Q value = 0.0029
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
17P LOSS MUTATED | 218 | 2.8 (5.5) |
17P LOSS WILD-TYPE | 200 | 1.3 (2.8) |
P value = 0.0158 (Fisher's exact test), Q value = 0.14
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
17Q LOSS MUTATED | 28 | 20 | 18 |
17Q LOSS WILD-TYPE | 229 | 84 | 63 |
P value = 0.0402 (Fisher's exact test), Q value = 0.21
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
17Q LOSS MUTATED | 38 | 14 |
17Q LOSS WILD-TYPE | 284 | 48 |
P value = 0.000891 (Wilcoxon-test), Q value = 0.021
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
17Q LOSS MUTATED | 62 | 3.6 (7.2) |
17Q LOSS WILD-TYPE | 356 | 1.8 (3.7) |
P value = 0.0271 (Wilcoxon-test), Q value = 0.17
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 441 | 67.0 (13.0) |
18P LOSS MUTATED | 249 | 66.0 (12.2) |
18P LOSS WILD-TYPE | 192 | 68.2 (13.9) |
P value = 0.00044 (Fisher's exact test), Q value = 0.015
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
18P LOSS MUTATED | 37 | 0 | 11 | 64 | 2 | 1 | 9 | 9 | 35 | 25 | 34 | 15 | 1 |
18P LOSS WILD-TYPE | 37 | 1 | 17 | 67 | 6 | 0 | 12 | 3 | 21 | 14 | 9 | 3 | 1 |
P value = 0.00395 (Fisher's exact test), Q value = 0.057
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
18P LOSS MUTATED | 127 | 68 | 53 |
18P LOSS WILD-TYPE | 130 | 36 | 28 |
P value = 2.25e-05 (Fisher's exact test), Q value = 0.0024
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
18P LOSS MUTATED | 168 | 50 |
18P LOSS WILD-TYPE | 154 | 12 |
P value = 1.19e-09 (Fisher's exact test), Q value = 1.2e-06
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
18P LOSS MUTATED | 235 | 12 |
18P LOSS WILD-TYPE | 146 | 48 |
P value = 0.0269 (Fisher's exact test), Q value = 0.17
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 316 | 3 | 24 | 25 |
18P LOSS MUTATED | 173 | 0 | 18 | 11 |
18P LOSS WILD-TYPE | 143 | 3 | 6 | 14 |
P value = 0.00183 (Wilcoxon-test), Q value = 0.033
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
18P LOSS MUTATED | 235 | 2.5 (5.1) |
18P LOSS WILD-TYPE | 183 | 1.6 (3.4) |
P value = 0.0186 (Wilcoxon-test), Q value = 0.14
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 441 | 67.0 (13.0) |
18Q LOSS MUTATED | 266 | 65.9 (12.3) |
18Q LOSS WILD-TYPE | 175 | 68.5 (13.9) |
P value = 2e-05 (Fisher's exact test), Q value = 0.0024
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
18Q LOSS MUTATED | 37 | 0 | 14 | 68 | 2 | 1 | 10 | 11 | 37 | 29 | 35 | 15 | 1 |
18Q LOSS WILD-TYPE | 37 | 1 | 14 | 63 | 6 | 0 | 11 | 1 | 19 | 10 | 8 | 3 | 1 |
P value = 0.00013 (Fisher's exact test), Q value = 0.0079
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
18Q LOSS MUTATED | 133 | 73 | 59 |
18Q LOSS WILD-TYPE | 124 | 31 | 22 |
P value = 0.000113 (Fisher's exact test), Q value = 0.0078
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
18Q LOSS MUTATED | 183 | 51 |
18Q LOSS WILD-TYPE | 139 | 11 |
P value = 3.9e-09 (Fisher's exact test), Q value = 1.9e-06
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
18Q LOSS MUTATED | 250 | 15 |
18Q LOSS WILD-TYPE | 131 | 45 |
P value = 0.00018 (Wilcoxon-test), Q value = 0.0085
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
18Q LOSS MUTATED | 252 | 2.4 (4.7) |
18Q LOSS WILD-TYPE | 166 | 1.6 (4.1) |
P value = 0.0181 (Fisher's exact test), Q value = 0.14
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
19P LOSS MUTATED | 7 | 0 | 1 | 5 | 0 | 0 | 3 | 1 | 3 | 7 | 7 | 4 | 1 |
19P LOSS WILD-TYPE | 67 | 1 | 27 | 126 | 8 | 1 | 18 | 11 | 53 | 32 | 36 | 14 | 1 |
P value = 0.00088 (Fisher's exact test), Q value = 0.021
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
19P LOSS MUTATED | 14 | 9 | 16 |
19P LOSS WILD-TYPE | 243 | 95 | 65 |
P value = 0.00252 (Fisher's exact test), Q value = 0.039
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
19P LOSS MUTATED | 21 | 12 |
19P LOSS WILD-TYPE | 301 | 50 |
P value = 7.6e-05 (Wilcoxon-test), Q value = 0.0062
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
19P LOSS MUTATED | 37 | 4.5 (5.3) |
19P LOSS WILD-TYPE | 381 | 1.9 (4.3) |
P value = 0.00161 (Fisher's exact test), Q value = 0.032
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
19Q LOSS MUTATED | 14 | 6 | 15 |
19Q LOSS WILD-TYPE | 243 | 98 | 66 |
P value = 0.0164 (Fisher's exact test), Q value = 0.14
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
19Q LOSS MUTATED | 20 | 10 |
19Q LOSS WILD-TYPE | 302 | 52 |
P value = 0.000474 (Wilcoxon-test), Q value = 0.015
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
19Q LOSS MUTATED | 33 | 4.6 (5.5) |
19Q LOSS WILD-TYPE | 385 | 1.9 (4.3) |
P value = 0.0196 (Fisher's exact test), Q value = 0.15
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
21Q LOSS MUTATED | 60 | 28 | 32 |
21Q LOSS WILD-TYPE | 197 | 76 | 49 |
P value = 0.00798 (Fisher's exact test), Q value = 0.091
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
21Q LOSS MUTATED | 112 | 8 |
21Q LOSS WILD-TYPE | 269 | 52 |
P value = 0.0199 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
21Q LOSS MUTATED | 114 | 3.2 (6.6) |
21Q LOSS WILD-TYPE | 304 | 1.7 (3.2) |
P value = 0.00122 (Fisher's exact test), Q value = 0.026
nPatients | STAGE I | STAGE IA | STAGE II | STAGE IIA | STAGE IIB | STAGE IIC | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE IVA | STAGE IVB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 74 | 1 | 28 | 131 | 8 | 1 | 21 | 12 | 56 | 39 | 43 | 18 | 2 |
22Q LOSS MUTATED | 17 | 0 | 7 | 32 | 1 | 0 | 6 | 7 | 17 | 20 | 23 | 8 | 0 |
22Q LOSS WILD-TYPE | 57 | 1 | 21 | 99 | 7 | 1 | 15 | 5 | 39 | 19 | 20 | 10 | 2 |
P value = 0.00014 (Fisher's exact test), Q value = 0.0079
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
22Q LOSS MUTATED | 62 | 43 | 37 |
22Q LOSS WILD-TYPE | 195 | 61 | 44 |
P value = 0.00162 (Fisher's exact test), Q value = 0.032
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
22Q LOSS MUTATED | 92 | 31 |
22Q LOSS WILD-TYPE | 230 | 31 |
P value = 0.00474 (Fisher's exact test), Q value = 0.065
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA |
---|---|---|
ALL | 381 | 60 |
22Q LOSS MUTATED | 132 | 10 |
22Q LOSS WILD-TYPE | 249 | 50 |
P value = 0.000146 (Wilcoxon-test), Q value = 0.0079
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
22Q LOSS MUTATED | 134 | 2.9 (5.0) |
22Q LOSS WILD-TYPE | 284 | 1.7 (4.1) |
P value = 0.00071 (Fisher's exact test), Q value = 0.019
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
XP LOSS MUTATED | 24 | 18 | 21 |
XP LOSS WILD-TYPE | 233 | 86 | 60 |
P value = 0.0273 (Fisher's exact test), Q value = 0.17
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
XP LOSS MUTATED | 40 | 15 |
XP LOSS WILD-TYPE | 282 | 47 |
P value = 0.000206 (Wilcoxon-test), Q value = 0.0087
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
XP LOSS MUTATED | 60 | 3.3 (4.5) |
XP LOSS WILD-TYPE | 358 | 1.9 (4.4) |
P value = 0.00852 (Fisher's exact test), Q value = 0.092
nPatients | N0 | N1 | N2 |
---|---|---|---|
ALL | 257 | 104 | 81 |
XQ LOSS MUTATED | 20 | 15 | 16 |
XQ LOSS WILD-TYPE | 237 | 89 | 65 |
P value = 0.0081 (Fisher's exact test), Q value = 0.091
nPatients | 0 | 1 |
---|---|---|
ALL | 322 | 62 |
XQ LOSS MUTATED | 31 | 14 |
XQ LOSS WILD-TYPE | 291 | 48 |
P value = 0.00386 (Wilcoxon-test), Q value = 0.057
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 418 | 2.1 (4.5) |
XQ LOSS MUTATED | 47 | 3.0 (4.5) |
XQ LOSS WILD-TYPE | 371 | 2.0 (4.4) |
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/COAD-TP/15082917/transformed.cor.cli.txt
-
Clinical data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/COAD-TP/15076851/COAD-TP.merged_data.txt
-
Number of patients = 443
-
Number of significantly arm-level cnvs = 81
-
Number of selected clinical features = 12
-
Exclude regions that fewer than K tumors have mutations, K = 3
For survival clinical features, the Kaplan-Meier survival curves of tumors with and without gene mutations were plotted and the statistical significance P values were estimated by logrank test (Bland and Altman 2004) using the 'survdiff' function in R
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.