Clinical Features MRNA_CNMF MRNA_CHIERARCHICAL CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q amp_2q33.1 92 (20%) 358 0.16501 0.278 0.11222 0.205 0.00056999 0.00231 0.00146 0.00514 0.04248 0.0923 0.04887 0.103 0.00022 0.000985 0.0022 0.00737 0.29498 0.439 0.10705 0.198 0.95201 0.98 0.67574 0.795 amp_5p13.2 88 (20%) 362 0.37981 0.535 0.18989 0.312 0.00018 0.000842 0.4394 0.595 0.00473 0.0144 0.9128 0.959 0.01311 0.0348 0.00243 0.00808 0.72995 0.831 0.66683 0.79 0.75728 0.853 0.5835 0.715 amp_5q22.3 46 (10%) 404 0.92427 0.961 1 1 0.0068899 0.0202 0.48921 0.64 0.32586 0.474 0.6363 0.764 0.18099 0.299 0.0368 0.0823 0.95014 0.98 0.70108 0.814 0.35534 0.508 0.33081 0.481 amp_6p21.1 96 (21%) 354 0.26208 0.406 3e-05 0.000169 9.9999e-06 6.04e-05 0.1064 0.198 0.50589 0.655 0.69941 0.814 0.01952 0.0485 9.9999e-05 0.000502 0.70631 0.818 0.77377 0.868 0.30687 0.453 0.40213 0.555 amp_7p21.2 255 (57%) 195 0.0092999 0.0261 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 5.9999e-05 0.000318 0.00124 0.00448 0.00164 0.00563 3e-05 0.000169 9.9999e-06 6.04e-05 0.54 0.681 0.45554 0.609 0.84084 0.911 0.03545 0.0798 amp_8p11.23 158 (35%) 292 0.3022 0.448 0.10812 0.2 9.9999e-06 6.04e-05 0.49903 0.65 0.76417 0.859 0.62613 0.755 0.11199 0.205 0.03747 0.0827 0.36033 0.512 0.26663 0.409 0.50652 0.655 0.12783 0.228 amp_8p11.21 188 (42%) 262 0.44648 0.603 0.01886 0.0473 9.9999e-06 6.04e-05 0.30658 0.453 0.24276 0.383 0.02376 0.0567 0.03889 0.0855 0.00158 0.00552 0.72266 0.828 0.32324 0.471 0.54208 0.681 0.10365 0.195 amp_8q12.1 236 (52%) 214 0.48915 0.64 0.0056999 0.017 9.9999e-06 6.04e-05 0.02851 0.0659 0.0099699 0.0276 0.00327 0.0106 0.00011 0.000542 9.9999e-06 6.04e-05 0.38299 0.536 0.03738 0.0827 0.27335 0.415 0.01254 0.0337 amp_8q24.21 260 (58%) 190 0.56248 0.697 0.02846 0.0659 9.9999e-06 6.04e-05 0.00169 0.00578 0.03895 0.0855 0.01375 0.0363 0.00021 0.000966 0.00011 0.000542 0.71531 0.824 0.03639 0.0817 0.26623 0.409 0.01469 0.0382 amp_11p15.5 94 (21%) 356 4e-05 0.000221 0.0059099 0.0175 2e-05 0.000117 0.00013 0.000637 0.00079999 0.00311 0.03373 0.0765 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.1084 0.2 9.9999e-06 6.04e-05 0.94257 0.975 0.27612 0.416 amp_12p13.33 111 (25%) 339 0.65262 0.779 0.79314 0.879 0.03244 0.0742 0.02096 0.0512 0.4267 0.581 0.87173 0.93 0.74946 0.848 0.84733 0.917 0.50945 0.657 0.79464 0.88 0.62905 0.757 0.85076 0.917 amp_13q12.13 275 (61%) 175 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.0053699 0.0161 0.01982 0.0491 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.57251 0.705 0.81043 0.89 0.39644 0.552 0.01591 0.0407 amp_13q22.1 277 (62%) 173 9.9999e-05 0.000502 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.0089399 0.0253 0.04855 0.103 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.45546 0.609 0.996 1 0.39908 0.552 0.076329 0.15 amp_16p11.2 126 (28%) 324 0.00050999 0.0021 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.0093699 0.0262 0.03121 0.0716 0.12467 0.224 0.00146 0.00514 9.9999e-06 6.04e-05 0.89127 0.943 0.14186 0.247 0.95889 0.985 0.062259 0.127 amp_16q12.1 111 (25%) 339 5e-05 0.000271 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.02783 0.065 0.10914 0.2 0.18743 0.309 0.00111 0.0041 9.9999e-06 6.04e-05 0.97567 0.996 0.081729 0.16 0.55807 0.694 0.02447 0.0581 amp_17p11.2 44 (10%) 406 0.2637 0.406 0.00397 0.0124 0.01221 0.0329 0.081109 0.159 0.0039 0.0123 0.060899 0.125 0.075239 0.149 0.2248 0.359 0.5436 0.682 0.80802 0.889 0.17459 0.291 0.065759 0.132 amp_17q12 114 (25%) 336 0.02639 0.0623 0.01435 0.0376 9.9999e-06 6.04e-05 0.00017 0.000809 0.14139 0.246 0.00275 0.00904 9.9999e-06 6.04e-05 0.00128 0.00461 0.03699 0.0823 0.01407 0.037 0.53093 0.675 0.55952 0.695 amp_17q24.1 106 (24%) 344 0.01691 0.0431 0.0072799 0.0213 9.9999e-06 6.04e-05 3e-05 0.000169 0.061959 0.126 0.00251 0.00831 9.9999e-06 6.04e-05 3e-05 0.000169 0.01196 0.0324 0.053759 0.112 0.20922 0.339 0.53232 0.676 amp_19p13.2 75 (17%) 375 0.068289 0.137 0.054379 0.113 3e-05 0.000169 0.02698 0.0633 0.67535 0.795 0.3826 0.536 0.46282 0.614 0.00042 0.00177 0.34825 0.501 0.43815 0.595 0.10538 0.196 0.02318 0.0555 amp_19q13.11 95 (21%) 355 0.18237 0.301 0.0308 0.0708 8.9999e-05 0.000457 0.1785 0.296 0.03381 0.0765 0.31152 0.457 0.37498 0.529 2e-04 0.000925 0.46282 0.614 0.55581 0.692 0.01838 0.0463 0.0016 0.00552 amp_20p12.1 208 (46%) 242 0.04573 0.0978 0.00112 0.00412 9.9999e-06 6.04e-05 0.071499 0.142 0.0089299 0.0253 0.26409 0.406 0.02247 0.0542 9.9999e-06 6.04e-05 0.26313 0.406 0.33835 0.491 0.2777 0.417 0.523 0.671 amp_20p11.21 252 (56%) 198 0.00191 0.00645 2e-05 0.000117 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.00378 0.012 0.10432 0.195 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.16559 0.279 0.0369 0.0823 0.91943 0.96 0.04969 0.104 amp_20q11.21 323 (72%) 127 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.00060999 0.00243 0.00224 0.00748 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.82239 0.898 0.00159 0.00552 1 1 0.00432 0.0134 amp_20q12 324 (72%) 126 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.00060999 0.00243 0.00049 0.00203 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.77604 0.869 0.00139 0.00494 1 1 0.0057499 0.0171 amp_20q13.12 326 (72%) 124 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.00022 0.000985 0.00036 0.00157 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.78872 0.879 0.00256 0.00844 1 1 0.0053499 0.0161 del_1p36.11 168 (37%) 282 6.9999e-05 0.000367 0.0082599 0.0236 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.02271 0.0545 0.01763 0.0446 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.66174 0.787 0.01986 0.0491 0.92093 0.96 0.25746 0.401 del_1p33 123 (27%) 327 0.01537 0.0395 0.56306 0.697 9.9999e-06 6.04e-05 0.00080999 0.00313 0.8295 0.904 0.49575 0.646 0.00022 0.000985 9.9999e-06 6.04e-05 0.71638 0.824 0.15207 0.263 1 1 0.35376 0.507 del_1p13.1 119 (26%) 331 0.086819 0.168 0.54138 0.681 9.9999e-06 6.04e-05 0.02017 0.0497 0.67775 0.796 0.89127 0.943 0.00018 0.000842 8.9999e-05 0.000457 0.79976 0.883 0.16653 0.279 0.9523 0.98 0.6447 0.771 del_1q43 54 (12%) 396 0.061709 0.126 0.50243 0.652 9.9999e-06 6.04e-05 0.060369 0.124 0.47233 0.624 0.71523 0.824 8.9999e-05 0.000457 0.00025 0.00111 0.14079 0.246 0.00068999 0.00273 0.02864 0.0661 0.96108 0.986 del_2p21 17 (4%) 433 0.59636 0.728 0.86678 0.928 0.89693 0.946 1 1 0.80832 0.889 0.71361 0.824 0.35178 0.505 0.28411 0.424 0.092749 0.178 0.34607 0.5 NA NA NA NA del_2q22.1 24 (5%) 426 0.9736 0.995 0.53916 0.681 0.4115 0.566 0.63458 0.763 0.085149 0.166 0.36166 0.512 0.22728 0.362 0.32009 0.468 0.25256 0.395 0.16658 0.279 1 1 0.85139 0.917 del_3p26.2 72 (16%) 378 0.21795 0.35 0.23327 0.37 0.00119 0.00432 0.12606 0.226 0.72672 0.83 0.50102 0.651 0.0075099 0.0217 0.00367 0.0117 0.7392 0.838 0.78973 0.879 0.53948 0.681 0.41266 0.567 del_3p14.2 88 (20%) 362 0.55431 0.692 0.83849 0.91 0.15581 0.267 0.31973 0.468 0.52431 0.672 0.0418 0.0911 0.12401 0.224 0.04114 0.0899 0.65065 0.777 0.7011 0.814 0.12788 0.228 0.70456 0.817 del_3q26.31 46 (10%) 404 0.64022 0.767 0.53853 0.681 0.2112 0.342 0.4223 0.576 0.59931 0.73 0.83633 0.909 0.095599 0.182 0.13814 0.243 0.15402 0.265 0.81651 0.895 0.090839 0.175 0.70068 0.814 del_4p16.2 139 (31%) 311 0.00075999 0.00298 0.0016 0.00552 9.9999e-06 6.04e-05 0.00306 0.00998 0.02654 0.0624 0.159 0.27 2e-05 0.000117 9.9999e-06 6.04e-05 0.35904 0.511 0.44833 0.604 0.14453 0.251 0.23523 0.372 del_4q22.1 151 (34%) 299 0.00045 0.00188 0.00397 0.0124 9.9999e-06 6.04e-05 0.00114 0.00418 0.10299 0.194 0.15418 0.265 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.39153 0.547 0.17104 0.286 0.32159 0.47 0.20536 0.334 del_4q35.1 159 (35%) 291 0.00106 0.00397 0.0074499 0.0216 9.9999e-06 6.04e-05 6.9999e-05 0.000367 0.01339 0.0354 0.29704 0.441 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.36158 0.512 0.41464 0.568 0.54599 0.683 0.91162 0.959 del_5q12.1 106 (24%) 344 0.0011 0.00408 0.00352 0.0113 9.9999e-06 6.04e-05 0.090719 0.175 0.00085999 0.00328 0.03345 0.0761 5e-05 0.000271 7.9999e-05 0.000414 0.70815 0.819 0.56701 0.701 1 1 0.14045 0.246 del_5q21.1 127 (28%) 323 0.27753 0.417 0.04427 0.095 9.9999e-06 6.04e-05 0.050609 0.106 0.02471 0.0585 0.39912 0.552 0.0068599 0.0202 2e-04 0.000925 0.944 0.975 0.8914 0.943 0.87081 0.93 0.49456 0.646 del_5q22.2 130 (29%) 320 0.01287 0.0344 0.0091199 0.0257 9.9999e-06 6.04e-05 0.15624 0.267 0.04838 0.103 0.34056 0.493 0.00022 0.000985 0.00016 0.000766 0.91162 0.959 0.27564 0.416 0.61416 0.743 0.45783 0.61 del_6p25.3 56 (12%) 394 0.85296 0.917 0.73599 0.836 0.10883 0.2 0.03713 0.0824 0.04287 0.0929 0.57139 0.705 0.52733 0.674 0.89493 0.945 0.66544 0.789 0.93891 0.974 0.053459 0.111 0.04334 0.0937 del_6q26 62 (14%) 388 0.58589 0.717 0.3984 0.552 0.91668 0.96 0.50887 0.657 0.083229 0.162 0.22231 0.356 0.38119 0.535 0.68603 0.805 0.69737 0.814 0.93986 0.974 0.4399 0.595 0.059069 0.122 del_7q31.1 13 (3%) 437 1 1 0.5972 0.728 0.0499 0.105 0.57456 0.707 0.16514 0.278 0.46162 0.614 0.35874 0.511 0.60322 0.733 0.79239 0.879 0.83004 0.904 NA NA NA NA del_8p23.3 189 (42%) 261 0.01108 0.0301 0.00022 0.000985 9.9999e-06 6.04e-05 0.00027 0.0012 0.00469 0.0143 0.0079799 0.0229 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.21698 0.349 0.050979 0.106 0.89031 0.943 0.04381 0.0943 del_8p22 203 (45%) 247 0.00459 0.0141 0.00011 0.000542 9.9999e-06 6.04e-05 5.9999e-05 0.000318 0.0073999 0.0215 0.00087999 0.00334 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.45725 0.61 0.01526 0.0395 0.76073 0.856 0.04883 0.103 del_8q11.1 30 (7%) 420 0.26127 0.405 0.097099 0.184 0.01545 0.0396 0.86444 0.927 0.27038 0.413 0.16495 0.278 0.37493 0.529 0.075549 0.149 0.19823 0.324 0.29546 0.439 0.66379 0.789 0.89102 0.943 del_9p21.3 62 (14%) 388 0.45286 0.609 0.088399 0.171 0.00387 0.0122 0.2834 0.424 0.81961 0.896 0.41023 0.565 0.01921 0.0481 0.00132 0.00473 0.62037 0.749 0.25694 0.401 0.20044 0.327 0.57953 0.711 del_10p15.3 80 (18%) 370 0.1168 0.213 0.10392 0.195 9.9999e-06 6.04e-05 0.00084999 0.00326 0.02207 0.0534 0.14042 0.246 0.00043 0.00181 0.00014 0.000682 0.45363 0.609 0.17953 0.297 0.5249 0.672 0.02165 0.0526 del_10q21.1 98 (22%) 352 0.00367 0.0117 0.02788 0.065 9.9999e-06 6.04e-05 0.0073799 0.0215 0.069739 0.139 0.25483 0.398 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.75158 0.849 0.48772 0.64 0.75456 0.851 0.72917 0.831 del_10q23.31 109 (24%) 341 0.098799 0.187 0.063139 0.128 9.9999e-06 6.04e-05 0.00343 0.0111 0.14603 0.253 0.47255 0.624 0.00182 0.00618 4e-05 0.000221 0.57899 0.711 0.13478 0.239 0.3471 0.5 0.39946 0.552 del_10q25.2 109 (24%) 341 0.12452 0.224 0.01731 0.044 9.9999e-06 6.04e-05 5.9999e-05 0.000318 0.0065499 0.0194 0.085719 0.166 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.96253 0.986 0.48801 0.64 0.53098 0.675 0.73963 0.838 del_12p13.2 60 (13%) 390 0.01028 0.0283 0.00299 0.00979 9.9999e-06 6.04e-05 0.01086 0.0296 0.30896 0.455 0.91769 0.96 4e-04 0.00171 9.9999e-06 6.04e-05 0.79321 0.879 0.35705 0.51 0.2259 0.36 0.00197 0.00663 del_13q14.13 19 (4%) 431 0.27228 0.414 0.86366 0.927 0.24315 0.383 0.24781 0.389 0.2392 0.378 0.24859 0.39 0.92217 0.96 0.8799 0.938 0.68836 0.806 0.94307 0.975 0.44849 0.604 0.30945 0.455 del_14q31.1 150 (33%) 300 9.9999e-06 6.04e-05 7.9999e-05 0.000414 9.9999e-06 6.04e-05 5e-05 0.000271 0.00032 0.00141 0.01927 0.0481 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.27805 0.417 0.02052 0.0503 0.26728 0.409 0.01439 0.0376 del_15q11.2 177 (39%) 273 0.00039 0.00167 0.00079999 0.00311 9.9999e-06 6.04e-05 0.00018 0.000842 0.02137 0.052 0.063459 0.128 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.98097 0.999 0.77639 0.869 0.25811 0.401 0.27293 0.415 del_15q15.2 172 (38%) 278 0.00178 0.00607 0.00054999 0.00225 9.9999e-06 6.04e-05 0.00015 0.000726 0.0096299 0.0268 0.02444 0.0581 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.92058 0.96 0.55524 0.692 0.15611 0.267 0.16761 0.28 del_15q21.1 169 (38%) 281 0.01839 0.0463 0.01532 0.0395 9.9999e-06 6.04e-05 0.00057999 0.00233 0.01008 0.0278 0.055519 0.115 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.88567 0.943 0.67435 0.795 0.13582 0.24 0.12885 0.229 del_15q22.33 161 (36%) 289 0.00034 0.00149 0.00047 0.00196 9.9999e-06 6.04e-05 0.00016 0.000766 0.076879 0.151 0.03273 0.0747 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.7891 0.879 0.85159 0.917 0.10281 0.194 0.080019 0.157 del_16p13.3 56 (12%) 394 0.23027 0.366 0.062369 0.127 0.093089 0.178 0.21604 0.348 0.39241 0.547 0.51444 0.661 0.065159 0.131 0.068239 0.137 0.85194 0.917 0.70122 0.814 0.61394 0.743 1 1 del_16q23.1 61 (14%) 389 0.27167 0.414 0.0052699 0.0159 0.41717 0.571 0.53308 0.676 0.14087 0.246 0.61455 0.743 0.27568 0.416 0.01279 0.0343 0.52798 0.674 0.46636 0.618 0.72186 0.828 0.48233 0.636 del_17p12 254 (56%) 196 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.01306 0.0348 0.00119 0.00432 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.67046 0.792 0.02268 0.0545 0.6054 0.735 0.00136 0.00485 del_17q24.3 69 (15%) 381 0.095349 0.181 0.51259 0.66 0.00422 0.0131 0.12122 0.22 0.86789 0.928 0.17757 0.295 0.04386 0.0943 0.13799 0.243 0.72261 0.828 0.97067 0.993 0.80754 0.889 0.43329 0.589 del_18p11.31 246 (55%) 204 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.00083999 0.00323 0.01056 0.0289 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.83328 0.907 0.0098299 0.0273 0.15907 0.27 0.00372 0.0118 del_18q12.2 274 (61%) 176 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.0044 0.0135 0.00107 0.00399 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.91408 0.959 0.02028 0.0498 0.15233 0.263 0.00478 0.0145 del_18q21.2 287 (64%) 163 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.00072999 0.00288 0.00057999 0.00233 9.9999e-06 6.04e-05 9.9999e-06 6.04e-05 0.38105 0.535 0.03479 0.0785 0.092979 0.178 0.0076499 0.022 del_19p13.3 63 (14%) 387 0.13144 0.234 0.12402 0.224 0.00098999 0.00374 0.20878 0.339 0.98084 0.999 0.21169 0.342 0.00434 0.0134 0.00103 0.00388 0.65377 0.779 0.0084799 0.0241 0.48425 0.637 0.28097 0.421 del_20p12.1 86 (19%) 364 0.04822 0.103 0.02813 0.0654 9.9999e-06 6.04e-05 0.00039 0.00167 0.72493 0.829 0.19587 0.321 2e-05 0.000117 4e-05 0.000221 0.10456 0.195 0.01046 0.0287 0.79997 0.883 0.04757 0.102 del_21q11.2 141 (31%) 309 0.01507 0.0391 0.070999 0.141 9.9999e-06 6.04e-05 0.03931 0.0861 0.16208 0.275 0.81714 0.895 9.9999e-06 6.04e-05 0.00042 0.00177 0.93685 0.973 0.12555 0.225 0.67081 0.792 0.34637 0.5 del_22q13.32 160 (36%) 290 0.00055999 0.00228 0.00039 0.00167 9.9999e-06 6.04e-05 0.00158 0.00552 0.11258 0.205 0.20045 0.327 2e-05 0.000117 9.9999e-06 6.04e-05 0.42051 0.575 0.79142 0.879 0.73117 0.832 0.54529 0.683