Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1q gain	6 (12%)	42	0.19664	1	0.66617	1	0.44856	1	0.27437	1	1	1	0.6359	1	0.41643	1	0.31551	1	1	1	0.84262	1
2p gain	6 (12%)	42	0.66904	1	0.66617	1	0.69573	1	0.82492	1	1	1	NA	NA	1	1	0.60507	1	1	1	0.21927	1
2q gain	6 (12%)	42	0.66904	1	0.66617	1	0.69454	1	0.82387	1	1	1	NA	NA	1	1	0.60411	1	1	1	0.22091	1
3p gain	10 (21%)	38	0.036327	0.773	0.28647	1	0.58996	1	0.24683	1	1	1	0.67574	1	0.63304	1	0.40335	1	0.7075	1	0.35036	1
3q gain	13 (27%)	35	0.018751	0.739	0.19302	1	0.13149	1	0.03714	0.773	1	1	0.51387	1	0.7651	1	0.56451	1	1	1	0.24839	1
5p gain	7 (15%)	41	0.68742	1	1	1	0.48979	1	0.68715	1	1	1	NA	NA	0.33948	1	0.63865	1	0.3558	1	0.11729	1
5q gain	6 (12%)	42	1	1	1	1	0.48829	1	0.68892	1	0.46429	1	NA	NA	0.6604	1	0.79649	1	0.61348	1	0.53311	1
6p gain	6 (12%)	42	0.19664	1	1	1	0.69682	1	0.82449	1	1	1	1	1	1	1	0.86205	1	0.644	1	0.88229	1
6q gain	4 (8%)	44	0.01992	0.739	0.60851	1	1	1	0.77045	1	1	1	NA	NA	0.71145	1	1	1	0.084408	1	0.87342	1
7p gain	15 (31%)	33	1.0388e-05	0.0027	0.53433	1	1	1	0.76188	1	1	1	0.45776	1	0.92516	1	0.88627	1	1	1	0.12293	1
7q gain	13 (27%)	35	7.7147e-06	0.0027	1	1	0.65323	1	1	1	0.67029	1	0.12202	1	0.66123	1	0.98775	1	1	1	0.38078	1
8p gain	7 (15%)	41	0.68742	1	0.4158	1	1	1	1	1	0.20635	1	NA	NA	0.10252	1	0.0055099	0.716	0.42751	1	0.25924	1
8q gain	8 (17%)	40	0.45109	1	0.24482	1	0.82938	1	0.82506	1	0.20635	1	NA	NA	0.14752	1	0.02777	0.772	0.42751	1	0.25745	1
9p gain	7 (15%)	41	0.68742	1	1	1	1	1	0.43955	1	1	1	NA	NA	0.77971	1	0.64016	1	1	1	0.46851	1
9q gain	7 (15%)	41	0.68742	1	1	1	1	1	0.44111	1	1	1	NA	NA	0.47905	1	0.29081	1	1	1	0.26624	1
10p gain	4 (8%)	44	0.01992	0.739	1	1	NA	NA	NA	NA	1	1	NA	NA	1	1	1	1	0.58127	1	0.6358	1
10q gain	4 (8%)	44	0.2864	1	0.60851	1	1	1	0.76713	1	0.46429	1	NA	NA	0.42357	1	0.77837	1	0.084408	1	0.25776	1
11p gain	9 (19%)	39	0.45109	1	0.4614	1	0.69664	1	0.37889	1	0.6	1	0.146	1	0.71683	1	0.1649	1	0.43296	1	0.22704	1
11q gain	13 (27%)	35	0.09594	1	0.19302	1	0.32807	1	0.35821	1	0.68599	1	0.087569	1	0.44991	1	0.073289	1	0.46818	1	0.39885	1
12p gain	7 (15%)	41	1	1	0.4158	1	0.83142	1	0.2998	1	0.58333	1	0.11085	1	0.81529	1	0.27599	1	0.38421	1	0.86399	1
12q gain	9 (19%)	39	1	1	0.13653	1	0.86956	1	0.4755	1	1	1	0.14638	1	0.64354	1	0.13582	1	0.43296	1	0.488	1
13q gain	5 (10%)	43	1	1	1	1	1	1	1	1	0.20635	1	NA	NA	0.13375	1	0.66086	1	0.034629	0.773	0.83867	1
16p gain	7 (15%)	41	0.011371	0.739	0.4158	1	0.85523	1	1	1	0.6	1	0.20778	1	0.32592	1	0.02849	0.772	0.38421	1	0.51813	1
16q gain	7 (15%)	41	0.096687	1	0.097147	1	0.85508	1	1	1	0.6	1	1	1	0.32793	1	0.01457	0.739	0.38421	1	0.70903	1
17q gain	3 (6%)	45	0.554	1	0.23404	1	1	1	0.76905	1	0.46429	1	NA	NA	0.60398	1	0.03503	0.773	0.58127	1	0.49879	1
18p gain	13 (27%)	35	0.09594	1	1	1	0.29256	1	0.77986	1	1	1	0.67515	1	0.36449	1	0.12284	1	0.50379	1	0.52277	1
18q gain	14 (29%)	34	0.049144	0.881	1	1	0.45316	1	0.68621	1	0.65459	1	1	1	0.45074	1	0.11493	1	0.32267	1	0.40423	1
19p gain	3 (6%)	45	0.554	1	1	1	NA	NA	NA	NA	0.46429	1	NA	NA	0.68746	1	0.68791	1	0.45238	1	NA	NA
19q gain	3 (6%)	45	0.554	1	1	1	NA	NA	NA	NA	0.46429	1	NA	NA	0.68905	1	0.68835	1	0.45238	1	NA	NA
20p gain	5 (10%)	43	0.37155	1	0.34752	1	0.25764	1	0.15412	1	1	1	NA	NA	0.28798	1	0.37765	1	1	1	0.69834	1
20q gain	4 (8%)	44	1	1	0.60851	1	0.23725	1	0.11924	1	0.46429	1	NA	NA	0.65451	1	0.81726	1	0.58127	1	0.30491	1
21q gain	10 (21%)	38	1	1	1	1	0.082399	1	0.03382	0.773	1	1	0.4256	1	0.02731	0.772	0.18676	1	0.25849	1	0.37384	1
xp gain	6 (12%)	42	0.02969	0.772	0.66617	1	0.80603	1	0.81289	1	0.48413	1	NA	NA	0.52006	1	0.17587	1	0.15802	1	0.01303	0.739
xq gain	6 (12%)	42	0.19664	1	0.66617	1	0.80556	1	0.81588	1	1	1	0.38611	1	0.78324	1	0.063599	1	0.38421	1	0.11142	1
1p loss	3 (6%)	45	0.554	1	1	1	0.31331	1	0.5704	1	1	1	1	1	1	1	0.85003	1	1	1	NA	NA
3p loss	5 (10%)	43	1	1	1	1	1	1	1	1	1	1	NA	NA	0.85423	1	0.95887	1	1	1	0.66361	1
3q loss	4 (8%)	44	1	1	1	1	NA	NA	NA	NA	1	1	NA	NA	1	1	1	1	0.58127	1	0.52381	1
4p loss	3 (6%)	45	0.554	1	1	1	NA	NA	NA	NA	0.46429	1	NA	NA	0.1503	1	0.68755	1	1	1	NA	NA
4q loss	4 (8%)	44	0.2864	1	0.60851	1	0.59352	1	0.57155	1	1	1	NA	NA	0.46486	1	0.23431	1	0.61348	1	0.87298	1
6q loss	7 (15%)	41	1	1	0.4158	1	1	1	1	1	1	1	0.3862	1	0.70584	1	0.7282	1	0.075398	1	0.51466	1
8p loss	8 (17%)	40	0.044639	0.829	1	1	0.02133	0.739	0.04348	0.829	0.31111	1	0.35129	1	0.20116	1	0.02668	0.772	1	1	0.9339	1
8q loss	4 (8%)	44	0.2864	1	1	1	0.04094	0.819	0.076289	1	1	1	NA	NA	0.65216	1	0.15738	1	1	1	NA	NA
13q loss	3 (6%)	45	0.554	1	1	1	NA	NA	NA	NA	1	1	NA	NA	1	1	0.84643	1	1	1	NA	NA
15q loss	7 (15%)	41	0.011371	0.739	0.4158	1	0.5885	1	0.56849	1	0.63889	1	0.45005	1	0.12667	1	0.36799	1	0.19727	1	0.74504	1
16q loss	4 (8%)	44	0.01992	0.739	1	1	0.58967	1	0.56862	1	1	1	0.6386	1	0.094869	1	0.12825	1	0.23868	1	0.66404	1
17p loss	9 (19%)	39	0.019532	0.739	1	1	1	1	1	1	1	1	0.76038	1	0.88718	1	0.50068	1	0.38421	1	0.2676	1
17q loss	4 (8%)	44	0.2864	1	0.60851	1	NA	NA	NA	NA	1	1	NA	NA	0.70833	1	0.49231	1	0.084408	1	0.46389	1
18p loss	5 (10%)	43	0.37155	1	0.34752	1	0.23657	1	0.27458	1	0.48413	1	NA	NA	0.55439	1	0.24764	1	0.15802	1	0.21496	1
18q loss	4 (8%)	44	0.2864	1	0.60851	1	NA	NA	NA	NA	1	1	NA	NA	0.65448	1	1	1	0.58127	1	0.52396	1
22q loss	3 (6%)	45	0.056025	0.971	1	1	1	1	0.76736	1	1	1	NA	NA	1	1	0.43645	1	1	1	NA	NA
xp loss	5 (10%)	43	0.37155	1	0.34752	1	0.59197	1	0.57119	1	0.58333	1	0.56196	1	0.33258	1	0.0138	0.739	0.3558	1	0.28389	1
xq loss	4 (8%)	44	0.2864	1	0.10922	1	0.59004	1	0.57171	1	0.58333	1	0.56542	1	0.14201	1	0.00207	0.359	0.61348	1	0.32445	1