Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q24.2	16 (33%)	32	0.0052411	0.292	1	1	0.8791	1	0.50916	1	0.40966	1	0.22263	0.882	0.77621	1	0.45571	1	1	1	1	1
amp_2p16.1	16 (33%)	32	0.12369	0.717	0.00050861	0.0678	0.46581	1	0.27309	0.96	0.68599	1	0.75281	1	0.059639	0.568	0.01258	0.387	0.33488	0.965	0.46797	1
amp_3q27.3	14 (29%)	34	0.0079998	0.292	0.34116	0.965	0.50477	1	0.24916	0.914	0.39553	1	0.72121	1	0.71043	1	0.29105	0.965	0.51593	1	0.37078	0.978
amp_3q29	15 (31%)	33	0.0032397	0.216	0.21238	0.882	0.32912	0.965	0.10833	0.711	0.65459	1	1	1	0.87992	1	0.29615	0.965	1	1	0.20386	0.882
amp_5p13.1	8 (17%)	40	1	1	0.70078	1	1	1	1	1	1	1	NA	NA	0.44935	1	0.58894	1	0.67286	1	0.18621	0.866
amp_7p22.3	16 (33%)	32	7.6208e-05	0.0152	0.35872	0.976	1	1	0.7632	1	1	1	0.65557	1	0.92505	1	0.88749	1	1	1	0.12339	0.717
amp_7q21.3	15 (31%)	33	1.0388e-05	0.00416	1	1	0.65491	1	1	1	0.67029	1	0.12297	0.717	0.51466	1	0.88822	1	0.74221	1	0.44724	1
amp_8q24.23	14 (29%)	34	1	1	0.75164	1	0.56036	1	0.78594	1	0.63889	1	0.67655	1	0.48748	1	0.19701	0.872	0.72578	1	0.34098	0.965
amp_12q21.1	14 (29%)	34	0.51711	1	0.024301	0.437	1	1	0.71864	1	1	1	0.12279	0.717	0.6805	1	0.071939	0.616	0.32267	0.965	0.7285	1
amp_16p12.2	10 (21%)	38	0.0081776	0.292	0.072265	0.616	1	1	0.85784	1	0.17271	0.835	0.33902	0.965	0.068869	0.616	0.04766	0.518	1	1	0.61292	1
amp_18q21.2	16 (33%)	32	0.030584	0.437	0.76011	1	0.71045	1	0.716	1	0.65459	1	1	1	0.2172	0.882	0.02923	0.437	0.33488	0.965	0.11404	0.716
amp_19q13.43	10 (21%)	38	1	1	0.28647	0.965	0.868	1	1	1	0.58333	1	1	1	0.26754	0.955	0.27931	0.963	0.70921	1	0.055689	0.547
amp_xq27.3	7 (15%)	41	0.096687	0.682	0.097147	0.682	1	1	0.43978	1	0.65459	1	0.70464	1	0.32663	0.965	0.081319	0.638	0.68195	1	0.32919	0.965
del_1p36.32	11 (23%)	37	0.015536	0.398	1	1	0.22884	0.882	0.54756	1	1	1	0.51949	1	0.55538	1	0.70214	1	1	1	0.43694	1
del_1p13.1	12 (25%)	36	0.50071	1	0.73997	1	0.41381	1	0.34292	0.965	0.67029	1	0.27687	0.963	0.55919	1	0.76449	1	1	1	0.57457	1
del_1q43	10 (21%)	38	0.036327	0.484	0.72379	1	0.01591	0.398	0.04721	0.518	1	1	1	1	0.71699	1	0.84163	1	1	1	0.61058	1
del_2q23.1	8 (17%)	40	0.23582	0.882	1	1	0.080249	0.638	0.13489	0.76	1	1	0.51429	1	0.77507	1	0.52516	1	0.67286	1	0.62233	1
del_3p21.31	8 (17%)	40	0.45109	1	0.70078	1	0.85447	1	0.71324	1	0.48413	1	NA	NA	0.23302	0.882	0.77749	1	0.21423	0.882	0.44217	1
del_4q35.1	10 (21%)	38	0.48728	1	0.72379	1	0.16684	0.828	0.34622	0.965	0.63889	1	0.54501	1	0.34652	0.965	0.15276	0.821	0.14944	0.819	0.37184	0.978
del_5q33.3	4 (8%)	44	0.2864	0.965	0.60851	1	NA	NA	NA	NA	1	1	0.03284	0.453	0.25215	0.917	0.0079899	0.292	0.31286	0.965	0.74473	1
del_6p21.32	6 (12%)	42	1	1	1	1	0.53294	1	0.2228	0.882	0.58333	1	0.76152	1	0.69707	1	0.51956	1	0.644	1	0.32691	0.965
del_6q14.1	17 (35%)	31	0.22054	0.882	0.54687	1	0.59317	1	0.52214	1	0.43478	1	0.32797	0.965	0.1983	0.872	0.17607	0.838	0.0032121	0.216	0.12146	0.717
del_6q22.32	16 (33%)	32	0.75898	1	0.030477	0.437	1	1	0.89106	1	0.39553	1	0.39295	1	0.3741	0.978	0.36521	0.978	0.049374	0.52	0.10622	0.711
del_6q23.3	16 (33%)	32	1	1	0.030477	0.437	0.1665	0.828	0.074949	0.625	0.083575	0.643	0.02288	0.437	0.17324	0.835	0.16649	0.828	0.023061	0.437	0.26012	0.937
del_7q33	5 (10%)	43	0.37155	0.978	1	1	NA	NA	NA	NA	0.46429	1	NA	NA	0.43047	1	0.18072	0.85	0.644	1	0.34474	0.965
del_8p23.2	12 (25%)	36	0.0061605	0.292	0.73997	1	0.32813	0.965	0.50757	1	0.31111	0.965	0.35644	0.976	0.60188	1	0.079829	0.638	0.7075	1	0.92872	1
del_8q12.1	9 (19%)	39	0.12727	0.727	0.4614	1	0.02308	0.437	0.04372	0.518	0.31111	0.965	0.35623	0.976	0.49808	1	0.4073	1	1	1	0.57837	1
del_9p21.3	17 (35%)	31	0.22054	0.882	0.014547	0.398	0.73756	1	0.71335	1	0.11449	0.716	0.32572	0.965	0.0087699	0.292	0.02953	0.437	0.054685	0.547	0.10837	0.711
del_10q23.31	8 (17%)	40	0.23582	0.882	1	1	1	1	0.76885	1	0.63889	1	0.04019	0.518	0.061569	0.573	0.67774	1	0.42751	1	0.02305	0.437
del_12p13.2	8 (17%)	40	0.044639	0.518	0.70078	1	0.65455	1	0.81807	1	1	1	1	1	0.66302	1	0.95582	1	1	1	0.8424	1
del_13q14.2	7 (15%)	41	0.096687	0.682	0.4158	1	0.16367	0.828	0.27371	0.96	1	1	0.76197	1	0.19042	0.872	0.24842	0.914	1	1	0.65396	1
del_15q21.1	13 (27%)	35	0.74131	1	0.51708	1	1	1	0.73352	1	1	1	0.65358	1	0.48766	1	0.66733	1	0.72578	1	0.32872	0.965
del_16p13.13	6 (12%)	42	0.19664	0.872	0.66617	1	0.10332	0.711	0.15395	0.821	0.31111	0.965	0.80855	1	0.32167	0.965	0.02775	0.437	0.61348	1	0.62771	1
del_16q23.1	5 (10%)	43	0.072436	0.616	1	1	0.19632	0.872	0.36675	0.978	0.63889	1	0.45031	1	0.090659	0.682	0.16416	0.828	0.11374	0.716	0.76322	1
del_17p13.1	13 (27%)	35	0.0022681	0.216	0.51708	1	0.54508	1	0.88264	1	1	1	1	1	0.64567	1	0.50849	1	1	1	0.61148	1
del_17q24.1	8 (17%)	40	0.23582	0.882	0.047924	0.518	0.21352	0.882	0.16769	0.828	1	1	0.04324	0.518	0.63765	1	0.02857	0.437	0.21423	0.882	0.14726	0.818
del_19p13.2	4 (8%)	44	1	1	1	1	NA	NA	NA	NA	0.48413	1	NA	NA	1	1	0.42703	1	1	1	0.66529	1
del_19q13.2	5 (10%)	43	1	1	0.34752	0.965	NA	NA	NA	NA	0.48413	1	NA	NA	1	1	0.66126	1	0.58127	1	0.72539	1
del_22q13.31	7 (15%)	41	0.096687	0.682	1	1	0.43991	1	0.83722	1	1	1	1	1	0.94665	1	0.90712	1	1	1	0.6229	1
del_xq28	3 (6%)	45	0.056025	0.547	0.23404	0.882	NA	NA	NA	NA	0.46429	1	NA	NA	0.47448	1	0.43993	1	1	1	NA	NA