This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 31 focal events and 10 molecular subtypes across 288 patients, 191 significant findings detected with P value < 0.05 and Q value < 0.25.
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amp_2p23.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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amp_2q32.1 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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amp_3q27.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_5q35.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_7q31.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_17q25.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_19p13.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_1p36.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_2p12 cnv correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.
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del_2q22.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_2q37.3 cnv correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_3p22.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_4q34.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_5p15.33 cnv correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_5q35.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_6p12.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_6q22.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_6q25.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_9p21.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_10q21.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_11q22.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_11q23.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_14q11.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_14q24.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_15q13.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_16q24.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_19p13.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_19q13.42 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_22q12.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_xp11.4 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_xq28 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
amp 7q31 2 | 177 (61%) | 111 |
1e-05 (5.08e-05) |
1e-05 (5.08e-05) |
0.0227 (0.0419) |
1e-05 (5.08e-05) |
1e-05 (5.08e-05) |
1e-05 (5.08e-05) |
0.0525 (0.0835) |
1e-05 (5.08e-05) |
3e-05 (0.000131) |
2e-05 (9.12e-05) |
del 5q35 2 | 11 (4%) | 277 |
0.0278 (0.0495) |
0.00019 (0.000669) |
0.726 (0.792) |
0.00361 (0.00848) |
0.00043 (0.00143) |
1e-05 (5.08e-05) |
0.00733 (0.0152) |
0.00305 (0.00744) |
0.00157 (0.00435) |
1e-05 (5.08e-05) |
del 9p21 3 | 40 (14%) | 248 |
1e-05 (5.08e-05) |
1e-05 (5.08e-05) |
0.688 (0.759) |
0.0001 (0.000392) |
1e-05 (5.08e-05) |
1e-05 (5.08e-05) |
0.00057 (0.00188) |
0.0293 (0.0516) |
7e-05 (0.000289) |
2e-05 (9.12e-05) |
amp 3q27 1 | 100 (35%) | 188 |
1e-05 (5.08e-05) |
0.034 (0.058) |
0.232 (0.309) |
0.00662 (0.0141) |
1e-05 (5.08e-05) |
0.0179 (0.0335) |
0.0326 (0.0559) |
0.00019 (0.000669) |
0.758 (0.81) |
0.0167 (0.0315) |
amp 17q25 2 | 201 (70%) | 87 |
1e-05 (5.08e-05) |
1e-05 (5.08e-05) |
0.0747 (0.114) |
7e-05 (0.000289) |
1e-05 (5.08e-05) |
1e-05 (5.08e-05) |
0.0709 (0.108) |
0.00085 (0.00258) |
0.00139 (0.00394) |
0.00103 (0.00304) |
del 3p22 1 | 25 (9%) | 263 |
1e-05 (5.08e-05) |
1e-05 (5.08e-05) |
0.758 (0.81) |
0.00078 (0.00239) |
1e-05 (5.08e-05) |
1e-05 (5.08e-05) |
0.206 (0.28) |
0.00529 (0.0117) |
0.0254 (0.0458) |
0.00415 (0.00967) |
amp 19p13 2 | 31 (11%) | 257 |
1e-05 (5.08e-05) |
0.0047 (0.0108) |
0.00655 (0.014) |
0.00995 (0.0194) |
0.0003 (0.00101) |
0.0014 (0.00394) |
0.122 (0.175) |
0.563 (0.639) |
0.0608 (0.0951) |
0.00792 (0.0162) |
del 1p36 31 | 55 (19%) | 233 |
1e-05 (5.08e-05) |
1e-05 (5.08e-05) |
0.754 (0.81) |
0.0253 (0.0458) |
1e-05 (5.08e-05) |
1e-05 (5.08e-05) |
0.774 (0.825) |
0.855 (0.89) |
0.0246 (0.0449) |
0.00511 (0.0114) |
del 4q34 3 | 32 (11%) | 256 |
1e-05 (5.08e-05) |
1e-05 (5.08e-05) |
0.85 (0.89) |
0.00062 (0.002) |
1e-05 (5.08e-05) |
1e-05 (5.08e-05) |
0.423 (0.5) |
0.365 (0.444) |
0.00889 (0.0177) |
2e-05 (9.12e-05) |
del 6q22 31 | 29 (10%) | 259 |
1e-05 (5.08e-05) |
0.00061 (0.00199) |
0.959 (0.978) |
0.0111 (0.0214) |
0.00019 (0.000669) |
1e-05 (5.08e-05) |
0.413 (0.491) |
0.265 (0.343) |
0.0144 (0.0275) |
0.0385 (0.0638) |
del 10q21 1 | 19 (7%) | 269 |
1e-05 (5.08e-05) |
1e-05 (5.08e-05) |
0.353 (0.431) |
0.00169 (0.0046) |
0.0001 (0.000392) |
0.0007 (0.00219) |
0.634 (0.709) |
0.974 (0.988) |
0.0359 (0.0608) |
0.00616 (0.0133) |
del 14q11 2 | 51 (18%) | 237 |
1e-05 (5.08e-05) |
0.00193 (0.00516) |
0.114 (0.165) |
0.00785 (0.0161) |
2e-05 (9.12e-05) |
1e-05 (5.08e-05) |
0.522 (0.604) |
0.558 (0.638) |
0.0232 (0.0426) |
0.0282 (0.05) |
del 14q24 2 | 50 (17%) | 238 |
1e-05 (5.08e-05) |
0.00016 (0.00059) |
0.0697 (0.107) |
0.00112 (0.00328) |
1e-05 (5.08e-05) |
1e-05 (5.08e-05) |
0.541 (0.621) |
0.571 (0.646) |
0.00697 (0.0147) |
0.00819 (0.0166) |
del 15q13 3 | 35 (12%) | 253 |
1e-05 (5.08e-05) |
0.00027 (0.00094) |
0.117 (0.168) |
0.00233 (0.00607) |
2e-05 (9.12e-05) |
1e-05 (5.08e-05) |
0.076 (0.115) |
0.598 (0.672) |
0.0406 (0.067) |
0.00318 (0.00769) |
del 22q12 2 | 63 (22%) | 225 |
1e-05 (5.08e-05) |
1e-05 (5.08e-05) |
0.535 (0.616) |
0.00101 (0.00301) |
1e-05 (5.08e-05) |
1e-05 (5.08e-05) |
1 (1.00) |
0.403 (0.482) |
0.0376 (0.0627) |
0.00487 (0.011) |
del xp11 4 | 34 (12%) | 254 |
1e-05 (5.08e-05) |
1e-05 (5.08e-05) |
0.598 (0.672) |
0.00065 (0.00206) |
1e-05 (5.08e-05) |
1e-05 (5.08e-05) |
0.702 (0.769) |
0.265 (0.343) |
0.00159 (0.00436) |
0.00029 (0.000988) |
del xq28 | 28 (10%) | 260 |
1e-05 (5.08e-05) |
9e-05 (0.000362) |
0.856 (0.89) |
0.0461 (0.0749) |
1e-05 (5.08e-05) |
0.00016 (0.00059) |
0.749 (0.809) |
0.794 (0.84) |
0.00736 (0.0152) |
0.00538 (0.0118) |
del 6q25 3 | 32 (11%) | 256 |
1e-05 (5.08e-05) |
2e-05 (9.12e-05) |
0.824 (0.866) |
0.0305 (0.0532) |
3e-05 (0.000131) |
1e-05 (5.08e-05) |
0.344 (0.425) |
0.742 (0.807) |
0.0428 (0.0702) |
0.0642 (0.099) |
del 11q22 3 | 31 (11%) | 257 |
1e-05 (5.08e-05) |
0.00011 (0.000426) |
0.89 (0.916) |
0.106 (0.155) |
3e-05 (0.000131) |
0.00235 (0.00607) |
0.238 (0.314) |
0.192 (0.264) |
0.0026 (0.0065) |
0.00235 (0.00607) |
del 11q23 3 | 29 (10%) | 259 |
1e-05 (5.08e-05) |
9e-05 (0.000362) |
0.688 (0.759) |
0.0634 (0.0982) |
0.00013 (0.000491) |
0.00136 (0.0039) |
0.323 (0.404) |
0.333 (0.415) |
0.00616 (0.0133) |
0.00512 (0.0114) |
amp 5q35 2 | 37 (13%) | 251 |
1e-05 (5.08e-05) |
0.00029 (0.000988) |
0.241 (0.316) |
0.0948 (0.141) |
0.0027 (0.0067) |
1e-05 (5.08e-05) |
0.0509 (0.0817) |
0.00476 (0.0108) |
0.409 (0.487) |
0.0551 (0.0867) |
del 2q37 3 | 12 (4%) | 276 |
0.0977 (0.144) |
0.00248 (0.0063) |
0.00953 (0.0187) |
0.11 (0.16) |
0.0158 (0.0299) |
0.0025 (0.0063) |
0.142 (0.2) |
0.154 (0.214) |
0.0452 (0.0737) |
0.232 (0.309) |
del 5p15 33 | 13 (5%) | 275 |
0.256 (0.335) |
0.00242 (0.0062) |
0.789 (0.838) |
0.0298 (0.0523) |
0.0325 (0.0559) |
0.00075 (0.00232) |
0.56 (0.638) |
0.204 (0.279) |
0.334 (0.415) |
0.00141 (0.00394) |
del 16q24 1 | 12 (4%) | 276 |
0.00018 (0.000656) |
0.00012 (0.000459) |
0.281 (0.36) |
0.267 (0.343) |
0.0029 (0.00713) |
0.00206 (0.00546) |
1 (1.00) |
0.0551 (0.0867) |
0.0104 (0.0201) |
0.05 (0.0808) |
del 19p13 3 | 23 (8%) | 265 |
2e-05 (9.12e-05) |
0.0121 (0.0232) |
0.682 (0.758) |
0.225 (0.303) |
0.00922 (0.0182) |
0.00421 (0.00974) |
0.238 (0.314) |
0.309 (0.388) |
0.0866 (0.129) |
0.0369 (0.0622) |
del 19q13 42 | 19 (7%) | 269 |
5e-05 (0.000212) |
0.0218 (0.0405) |
0.886 (0.915) |
0.0372 (0.0623) |
0.00177 (0.00477) |
0.0034 (0.00811) |
0.398 (0.478) |
0.304 (0.383) |
0.229 (0.307) |
0.348 (0.428) |
del 2q22 1 | 10 (3%) | 278 |
0.00358 (0.00847) |
0.00581 (0.0127) |
0.484 (0.567) |
0.375 (0.455) |
5e-05 (0.000212) |
0.00719 (0.0151) |
0.668 (0.745) |
0.811 (0.855) |
0.179 (0.246) |
0.426 (0.502) |
del 6p12 3 | 26 (9%) | 262 |
1e-05 (5.08e-05) |
0.00063 (0.00201) |
1 (1.00) |
0.378 (0.456) |
0.0012 (0.00348) |
0.00088 (0.00265) |
0.131 (0.186) |
0.506 (0.589) |
0.261 (0.341) |
0.217 (0.294) |
amp 2p23 2 | 45 (16%) | 243 |
1e-05 (5.08e-05) |
0.00828 (0.0166) |
0.884 (0.915) |
0.0257 (0.0461) |
0.0989 (0.145) |
0.952 (0.974) |
0.152 (0.212) |
0.0613 (0.0955) |
0.439 (0.515) |
0.0784 (0.118) |
amp 2q32 1 | 53 (18%) | 235 |
1e-05 (5.08e-05) |
0.0307 (0.0532) |
0.747 (0.809) |
0.0517 (0.0827) |
0.35 (0.429) |
0.938 (0.963) |
0.302 (0.383) |
0.128 (0.182) |
0.976 (0.988) |
0.512 (0.594) |
del 2p12 | 8 (3%) | 280 |
0.0842 (0.126) |
0.00826 (0.0166) |
0.132 (0.186) |
0.292 (0.37) |
0.0032 (0.00769) |
0.11 (0.16) |
0.176 (0.244) |
0.282 (0.36) |
0.693 (0.762) |
1 (1.00) |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
AMP PEAK 1(2P23.2) MUTATED | 2 | 3 | 14 | 26 |
AMP PEAK 1(2P23.2) WILD-TYPE | 112 | 73 | 32 | 26 |
P value = 0.00828 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
AMP PEAK 1(2P23.2) MUTATED | 5 | 16 | 21 |
AMP PEAK 1(2P23.2) WILD-TYPE | 77 | 55 | 98 |
P value = 0.0257 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 41 | 35 | 26 | 39 | 26 |
AMP PEAK 1(2P23.2) MUTATED | 5 | 2 | 6 | 6 | 9 | 2 | 2 |
AMP PEAK 1(2P23.2) WILD-TYPE | 12 | 20 | 35 | 29 | 17 | 37 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
AMP PEAK 2(2Q32.1) MUTATED | 4 | 4 | 15 | 30 |
AMP PEAK 2(2Q32.1) WILD-TYPE | 110 | 72 | 31 | 22 |
P value = 0.0307 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
AMP PEAK 2(2Q32.1) MUTATED | 8 | 18 | 24 |
AMP PEAK 2(2Q32.1) WILD-TYPE | 74 | 53 | 95 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
AMP PEAK 3(3Q27.1) MUTATED | 20 | 17 | 45 | 18 |
AMP PEAK 3(3Q27.1) WILD-TYPE | 94 | 59 | 1 | 34 |
P value = 0.034 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
AMP PEAK 3(3Q27.1) MUTATED | 25 | 18 | 51 |
AMP PEAK 3(3Q27.1) WILD-TYPE | 57 | 53 | 68 |
P value = 0.00662 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 41 | 35 | 26 | 39 | 26 |
AMP PEAK 3(3Q27.1) MUTATED | 12 | 11 | 15 | 9 | 6 | 9 | 6 |
AMP PEAK 3(3Q27.1) WILD-TYPE | 5 | 11 | 26 | 26 | 20 | 30 | 20 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
AMP PEAK 3(3Q27.1) MUTATED | 18 | 38 | 31 | 13 |
AMP PEAK 3(3Q27.1) WILD-TYPE | 16 | 58 | 35 | 79 |
P value = 0.0179 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
AMP PEAK 3(3Q27.1) MUTATED | 37 | 53 | 10 |
AMP PEAK 3(3Q27.1) WILD-TYPE | 81 | 70 | 37 |
P value = 0.0326 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 103 | 96 |
AMP PEAK 3(3Q27.1) MUTATED | 38 | 38 | 24 |
AMP PEAK 3(3Q27.1) WILD-TYPE | 51 | 65 | 72 |
P value = 0.00019 (Fisher's exact test), Q value = 0.00067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 66 | 81 | 86 |
AMP PEAK 3(3Q27.1) MUTATED | 20 | 18 | 43 | 19 |
AMP PEAK 3(3Q27.1) WILD-TYPE | 35 | 48 | 38 | 67 |
P value = 0.0167 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
AMP PEAK 3(3Q27.1) MUTATED | 42 | 19 | 3 | 6 |
AMP PEAK 3(3Q27.1) WILD-TYPE | 56 | 58 | 13 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
AMP PEAK 4(5Q35.2) MUTATED | 19 | 2 | 0 | 16 |
AMP PEAK 4(5Q35.2) WILD-TYPE | 95 | 74 | 46 | 36 |
P value = 0.00029 (Fisher's exact test), Q value = 0.00099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
AMP PEAK 4(5Q35.2) MUTATED | 12 | 17 | 5 |
AMP PEAK 4(5Q35.2) WILD-TYPE | 70 | 54 | 114 |
P value = 0.0027 (Fisher's exact test), Q value = 0.0067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
AMP PEAK 4(5Q35.2) MUTATED | 4 | 4 | 9 | 20 |
AMP PEAK 4(5Q35.2) WILD-TYPE | 30 | 92 | 57 | 72 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
AMP PEAK 4(5Q35.2) MUTATED | 29 | 4 | 4 |
AMP PEAK 4(5Q35.2) WILD-TYPE | 89 | 119 | 43 |
P value = 0.00476 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 66 | 81 | 86 |
AMP PEAK 4(5Q35.2) MUTATED | 14 | 10 | 4 | 9 |
AMP PEAK 4(5Q35.2) WILD-TYPE | 41 | 56 | 77 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
AMP PEAK 5(7Q31.2) MUTATED | 32 | 75 | 43 | 27 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 82 | 1 | 3 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
AMP PEAK 5(7Q31.2) MUTATED | 39 | 25 | 102 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 43 | 46 | 17 |
P value = 0.0227 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 86 | 47 |
AMP PEAK 5(7Q31.2) MUTATED | 46 | 61 | 22 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 27 | 25 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 41 | 35 | 26 | 39 | 26 |
AMP PEAK 5(7Q31.2) MUTATED | 14 | 17 | 39 | 15 | 12 | 18 | 14 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 3 | 5 | 2 | 20 | 14 | 21 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
AMP PEAK 5(7Q31.2) MUTATED | 29 | 84 | 39 | 25 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 5 | 12 | 27 | 67 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
AMP PEAK 5(7Q31.2) MUTATED | 54 | 105 | 18 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 64 | 18 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 66 | 81 | 86 |
AMP PEAK 5(7Q31.2) MUTATED | 23 | 41 | 67 | 46 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 32 | 25 | 14 | 40 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 81 | 71 |
AMP PEAK 5(7Q31.2) MUTATED | 33 | 64 | 35 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 36 | 17 | 36 |
P value = 2e-05 (Fisher's exact test), Q value = 9.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
AMP PEAK 5(7Q31.2) MUTATED | 67 | 35 | 4 | 26 |
AMP PEAK 5(7Q31.2) WILD-TYPE | 31 | 42 | 12 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
AMP PEAK 6(17Q25.2) MUTATED | 43 | 76 | 45 | 37 |
AMP PEAK 6(17Q25.2) WILD-TYPE | 71 | 0 | 1 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
AMP PEAK 6(17Q25.2) MUTATED | 44 | 39 | 106 |
AMP PEAK 6(17Q25.2) WILD-TYPE | 38 | 32 | 13 |
P value = 7e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 41 | 35 | 26 | 39 | 26 |
AMP PEAK 6(17Q25.2) MUTATED | 15 | 20 | 37 | 21 | 12 | 23 | 18 |
AMP PEAK 6(17Q25.2) WILD-TYPE | 2 | 2 | 4 | 14 | 14 | 16 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
AMP PEAK 6(17Q25.2) MUTATED | 24 | 88 | 46 | 43 |
AMP PEAK 6(17Q25.2) WILD-TYPE | 10 | 8 | 20 | 49 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
AMP PEAK 6(17Q25.2) MUTATED | 73 | 109 | 19 |
AMP PEAK 6(17Q25.2) WILD-TYPE | 45 | 14 | 28 |
P value = 0.00085 (Fisher's exact test), Q value = 0.0026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 66 | 81 | 86 |
AMP PEAK 6(17Q25.2) MUTATED | 30 | 46 | 69 | 56 |
AMP PEAK 6(17Q25.2) WILD-TYPE | 25 | 20 | 12 | 30 |
P value = 0.00139 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 81 | 71 |
AMP PEAK 6(17Q25.2) MUTATED | 42 | 67 | 42 |
AMP PEAK 6(17Q25.2) WILD-TYPE | 27 | 14 | 29 |
P value = 0.00103 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
AMP PEAK 6(17Q25.2) MUTATED | 72 | 45 | 7 | 27 |
AMP PEAK 6(17Q25.2) WILD-TYPE | 26 | 32 | 9 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
AMP PEAK 7(19P13.2) MUTATED | 1 | 22 | 0 | 8 |
AMP PEAK 7(19P13.2) WILD-TYPE | 113 | 54 | 46 | 44 |
P value = 0.0047 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
AMP PEAK 7(19P13.2) MUTATED | 4 | 3 | 20 |
AMP PEAK 7(19P13.2) WILD-TYPE | 78 | 68 | 99 |
P value = 0.00655 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 86 | 47 |
AMP PEAK 7(19P13.2) MUTATED | 4 | 15 | 1 |
AMP PEAK 7(19P13.2) WILD-TYPE | 69 | 71 | 46 |
P value = 0.00995 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 41 | 35 | 26 | 39 | 26 |
AMP PEAK 7(19P13.2) MUTATED | 1 | 0 | 9 | 4 | 2 | 0 | 4 |
AMP PEAK 7(19P13.2) WILD-TYPE | 16 | 22 | 32 | 31 | 24 | 39 | 22 |
P value = 3e-04 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
AMP PEAK 7(19P13.2) MUTATED | 1 | 21 | 2 | 7 |
AMP PEAK 7(19P13.2) WILD-TYPE | 33 | 75 | 64 | 85 |
P value = 0.0014 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
AMP PEAK 7(19P13.2) MUTATED | 4 | 20 | 7 |
AMP PEAK 7(19P13.2) WILD-TYPE | 114 | 103 | 40 |
P value = 0.00792 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
AMP PEAK 7(19P13.2) MUTATED | 9 | 3 | 1 | 8 |
AMP PEAK 7(19P13.2) WILD-TYPE | 89 | 74 | 15 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 1(1P36.31) MUTATED | 21 | 0 | 2 | 32 |
DEL PEAK 1(1P36.31) WILD-TYPE | 93 | 76 | 44 | 20 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 1(1P36.31) MUTATED | 15 | 28 | 9 |
DEL PEAK 1(1P36.31) WILD-TYPE | 67 | 43 | 110 |
P value = 0.0253 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 41 | 35 | 26 | 39 | 26 |
DEL PEAK 1(1P36.31) MUTATED | 2 | 4 | 3 | 7 | 11 | 7 | 8 |
DEL PEAK 1(1P36.31) WILD-TYPE | 15 | 18 | 38 | 28 | 15 | 32 | 18 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 1(1P36.31) MUTATED | 0 | 5 | 10 | 40 |
DEL PEAK 1(1P36.31) WILD-TYPE | 34 | 91 | 56 | 52 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 1(1P36.31) MUTATED | 28 | 8 | 19 |
DEL PEAK 1(1P36.31) WILD-TYPE | 90 | 115 | 28 |
P value = 0.0246 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 81 | 71 |
DEL PEAK 1(1P36.31) MUTATED | 13 | 8 | 19 |
DEL PEAK 1(1P36.31) WILD-TYPE | 56 | 73 | 52 |
P value = 0.00511 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
DEL PEAK 1(1P36.31) MUTATED | 17 | 18 | 5 | 0 |
DEL PEAK 1(1P36.31) WILD-TYPE | 81 | 59 | 11 | 30 |
P value = 0.00826 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 2(2P12) MUTATED | 3 | 5 | 0 |
DEL PEAK 2(2P12) WILD-TYPE | 79 | 66 | 119 |
P value = 0.0032 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 2(2P12) MUTATED | 1 | 0 | 0 | 7 |
DEL PEAK 2(2P12) WILD-TYPE | 33 | 96 | 66 | 85 |
P value = 0.00358 (Fisher's exact test), Q value = 0.0085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 3(2Q22.1) MUTATED | 4 | 0 | 0 | 6 |
DEL PEAK 3(2Q22.1) WILD-TYPE | 110 | 76 | 46 | 46 |
P value = 0.00581 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 3(2Q22.1) MUTATED | 4 | 5 | 0 |
DEL PEAK 3(2Q22.1) WILD-TYPE | 78 | 66 | 119 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 3(2Q22.1) MUTATED | 0 | 0 | 0 | 10 |
DEL PEAK 3(2Q22.1) WILD-TYPE | 34 | 96 | 66 | 82 |
P value = 0.00719 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 3(2Q22.1) MUTATED | 7 | 0 | 3 |
DEL PEAK 3(2Q22.1) WILD-TYPE | 111 | 123 | 44 |
P value = 0.00248 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 4(2Q37.3) MUTATED | 4 | 6 | 0 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 78 | 65 | 119 |
P value = 0.00953 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 86 | 47 |
DEL PEAK 4(2Q37.3) MUTATED | 0 | 3 | 5 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 73 | 83 | 42 |
P value = 0.0158 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 4(2Q37.3) MUTATED | 0 | 1 | 2 | 9 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 34 | 95 | 64 | 83 |
P value = 0.0025 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 4(2Q37.3) MUTATED | 9 | 0 | 3 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 109 | 123 | 44 |
P value = 0.0452 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 81 | 71 |
DEL PEAK 4(2Q37.3) MUTATED | 7 | 1 | 3 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 62 | 80 | 68 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 5(3P22.1) MUTATED | 6 | 0 | 0 | 19 |
DEL PEAK 5(3P22.1) WILD-TYPE | 108 | 76 | 46 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 5(3P22.1) MUTATED | 5 | 18 | 1 |
DEL PEAK 5(3P22.1) WILD-TYPE | 77 | 53 | 118 |
P value = 0.00078 (Fisher's exact test), Q value = 0.0024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 41 | 35 | 26 | 39 | 26 |
DEL PEAK 5(3P22.1) MUTATED | 0 | 3 | 0 | 4 | 7 | 1 | 5 |
DEL PEAK 5(3P22.1) WILD-TYPE | 17 | 19 | 41 | 31 | 19 | 38 | 21 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 5(3P22.1) MUTATED | 0 | 0 | 4 | 21 |
DEL PEAK 5(3P22.1) WILD-TYPE | 34 | 96 | 62 | 71 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 5(3P22.1) MUTATED | 21 | 0 | 4 |
DEL PEAK 5(3P22.1) WILD-TYPE | 97 | 123 | 43 |
P value = 0.00529 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 66 | 81 | 86 |
DEL PEAK 5(3P22.1) MUTATED | 9 | 5 | 1 | 10 |
DEL PEAK 5(3P22.1) WILD-TYPE | 46 | 61 | 80 | 76 |
P value = 0.0254 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 81 | 71 |
DEL PEAK 5(3P22.1) MUTATED | 10 | 3 | 11 |
DEL PEAK 5(3P22.1) WILD-TYPE | 59 | 78 | 60 |
P value = 0.00415 (Fisher's exact test), Q value = 0.0097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
DEL PEAK 5(3P22.1) MUTATED | 7 | 16 | 1 | 0 |
DEL PEAK 5(3P22.1) WILD-TYPE | 91 | 61 | 15 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 6(4Q34.3) MUTATED | 8 | 1 | 1 | 22 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 106 | 75 | 45 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 6(4Q34.3) MUTATED | 6 | 22 | 2 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 76 | 49 | 117 |
P value = 0.00062 (Fisher's exact test), Q value = 0.002
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 41 | 35 | 26 | 39 | 26 |
DEL PEAK 6(4Q34.3) MUTATED | 0 | 2 | 0 | 5 | 6 | 3 | 8 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 17 | 20 | 41 | 30 | 20 | 36 | 18 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 6(4Q34.3) MUTATED | 0 | 1 | 3 | 28 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 34 | 95 | 63 | 64 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 6(4Q34.3) MUTATED | 18 | 2 | 12 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 100 | 121 | 35 |
P value = 0.00889 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 81 | 71 |
DEL PEAK 6(4Q34.3) MUTATED | 10 | 3 | 13 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 59 | 78 | 58 |
P value = 2e-05 (Fisher's exact test), Q value = 9.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
DEL PEAK 6(4Q34.3) MUTATED | 7 | 11 | 8 | 0 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 91 | 66 | 8 | 30 |
P value = 0.00242 (Fisher's exact test), Q value = 0.0062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 7(5P15.33) MUTATED | 2 | 9 | 2 |
DEL PEAK 7(5P15.33) WILD-TYPE | 80 | 62 | 117 |
P value = 0.0298 (Fisher's exact test), Q value = 0.052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 41 | 35 | 26 | 39 | 26 |
DEL PEAK 7(5P15.33) MUTATED | 0 | 1 | 1 | 3 | 5 | 0 | 1 |
DEL PEAK 7(5P15.33) WILD-TYPE | 17 | 21 | 40 | 32 | 21 | 39 | 25 |
P value = 0.0325 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 7(5P15.33) MUTATED | 0 | 1 | 4 | 8 |
DEL PEAK 7(5P15.33) WILD-TYPE | 34 | 95 | 62 | 84 |
P value = 0.00075 (Fisher's exact test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 7(5P15.33) MUTATED | 5 | 1 | 7 |
DEL PEAK 7(5P15.33) WILD-TYPE | 113 | 122 | 40 |
P value = 0.00141 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
DEL PEAK 7(5P15.33) MUTATED | 3 | 2 | 5 | 1 |
DEL PEAK 7(5P15.33) WILD-TYPE | 95 | 75 | 11 | 29 |
P value = 0.0278 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 8(5Q35.2) MUTATED | 3 | 1 | 1 | 6 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 111 | 75 | 45 | 46 |
P value = 0.00019 (Fisher's exact test), Q value = 0.00067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 8(5Q35.2) MUTATED | 2 | 8 | 0 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 80 | 63 | 119 |
P value = 0.00361 (Fisher's exact test), Q value = 0.0085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 41 | 35 | 26 | 39 | 26 |
DEL PEAK 8(5Q35.2) MUTATED | 0 | 0 | 0 | 1 | 4 | 0 | 3 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 17 | 22 | 41 | 34 | 22 | 39 | 23 |
P value = 0.00043 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 8(5Q35.2) MUTATED | 0 | 0 | 1 | 10 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 34 | 96 | 65 | 82 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 8(5Q35.2) MUTATED | 3 | 0 | 8 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 115 | 123 | 39 |
P value = 0.00733 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 103 | 96 |
DEL PEAK 8(5Q35.2) MUTATED | 0 | 3 | 8 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 89 | 100 | 88 |
P value = 0.00305 (Fisher's exact test), Q value = 0.0074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 66 | 81 | 86 |
DEL PEAK 8(5Q35.2) MUTATED | 0 | 1 | 1 | 9 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 55 | 65 | 80 | 77 |
P value = 0.00157 (Fisher's exact test), Q value = 0.0043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 81 | 71 |
DEL PEAK 8(5Q35.2) MUTATED | 2 | 0 | 8 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 67 | 81 | 63 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
DEL PEAK 8(5Q35.2) MUTATED | 1 | 1 | 8 | 0 |
DEL PEAK 8(5Q35.2) WILD-TYPE | 97 | 76 | 8 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 9(6P12.3) MUTATED | 8 | 0 | 1 | 17 |
DEL PEAK 9(6P12.3) WILD-TYPE | 106 | 76 | 45 | 35 |
P value = 0.00063 (Fisher's exact test), Q value = 0.002
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 9(6P12.3) MUTATED | 5 | 15 | 5 |
DEL PEAK 9(6P12.3) WILD-TYPE | 77 | 56 | 114 |
P value = 0.0012 (Fisher's exact test), Q value = 0.0035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 9(6P12.3) MUTATED | 0 | 4 | 5 | 17 |
DEL PEAK 9(6P12.3) WILD-TYPE | 34 | 92 | 61 | 75 |
P value = 0.00088 (Fisher's exact test), Q value = 0.0026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 9(6P12.3) MUTATED | 12 | 4 | 10 |
DEL PEAK 9(6P12.3) WILD-TYPE | 106 | 119 | 37 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 10(6Q22.31) MUTATED | 8 | 0 | 1 | 20 |
DEL PEAK 10(6Q22.31) WILD-TYPE | 106 | 76 | 45 | 32 |
P value = 0.00061 (Fisher's exact test), Q value = 0.002
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 10(6Q22.31) MUTATED | 9 | 15 | 4 |
DEL PEAK 10(6Q22.31) WILD-TYPE | 73 | 56 | 115 |
P value = 0.0111 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 41 | 35 | 26 | 39 | 26 |
DEL PEAK 10(6Q22.31) MUTATED | 1 | 2 | 1 | 6 | 6 | 1 | 6 |
DEL PEAK 10(6Q22.31) WILD-TYPE | 16 | 20 | 40 | 29 | 20 | 38 | 20 |
P value = 0.00019 (Fisher's exact test), Q value = 0.00067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 10(6Q22.31) MUTATED | 1 | 3 | 5 | 20 |
DEL PEAK 10(6Q22.31) WILD-TYPE | 33 | 93 | 61 | 72 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 10(6Q22.31) MUTATED | 13 | 3 | 13 |
DEL PEAK 10(6Q22.31) WILD-TYPE | 105 | 120 | 34 |
P value = 0.0144 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 81 | 71 |
DEL PEAK 10(6Q22.31) MUTATED | 3 | 5 | 13 |
DEL PEAK 10(6Q22.31) WILD-TYPE | 66 | 76 | 58 |
P value = 0.0385 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
DEL PEAK 10(6Q22.31) MUTATED | 7 | 11 | 3 | 0 |
DEL PEAK 10(6Q22.31) WILD-TYPE | 91 | 66 | 13 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 11(6Q25.3) MUTATED | 7 | 0 | 1 | 24 |
DEL PEAK 11(6Q25.3) WILD-TYPE | 107 | 76 | 45 | 28 |
P value = 2e-05 (Fisher's exact test), Q value = 9.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 11(6Q25.3) MUTATED | 8 | 19 | 4 |
DEL PEAK 11(6Q25.3) WILD-TYPE | 74 | 52 | 115 |
P value = 0.0305 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 41 | 35 | 26 | 39 | 26 |
DEL PEAK 11(6Q25.3) MUTATED | 1 | 3 | 1 | 6 | 6 | 2 | 6 |
DEL PEAK 11(6Q25.3) WILD-TYPE | 16 | 19 | 40 | 29 | 20 | 37 | 20 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 11(6Q25.3) MUTATED | 0 | 3 | 6 | 23 |
DEL PEAK 11(6Q25.3) WILD-TYPE | 34 | 93 | 60 | 69 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 11(6Q25.3) MUTATED | 17 | 3 | 12 |
DEL PEAK 11(6Q25.3) WILD-TYPE | 101 | 120 | 35 |
P value = 0.0428 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 81 | 71 |
DEL PEAK 11(6Q25.3) MUTATED | 4 | 6 | 13 |
DEL PEAK 11(6Q25.3) WILD-TYPE | 65 | 75 | 58 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 12(9P21.3) MUTATED | 11 | 2 | 1 | 26 |
DEL PEAK 12(9P21.3) WILD-TYPE | 103 | 74 | 45 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 12(9P21.3) MUTATED | 12 | 22 | 3 |
DEL PEAK 12(9P21.3) WILD-TYPE | 70 | 49 | 116 |
P value = 1e-04 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 41 | 35 | 26 | 39 | 26 |
DEL PEAK 12(9P21.3) MUTATED | 0 | 3 | 0 | 7 | 8 | 3 | 8 |
DEL PEAK 12(9P21.3) WILD-TYPE | 17 | 19 | 41 | 28 | 18 | 36 | 18 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 12(9P21.3) MUTATED | 1 | 2 | 4 | 33 |
DEL PEAK 12(9P21.3) WILD-TYPE | 33 | 94 | 62 | 59 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 12(9P21.3) MUTATED | 20 | 0 | 20 |
DEL PEAK 12(9P21.3) WILD-TYPE | 98 | 123 | 27 |
P value = 0.00057 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 103 | 96 |
DEL PEAK 12(9P21.3) MUTATED | 3 | 16 | 21 |
DEL PEAK 12(9P21.3) WILD-TYPE | 86 | 87 | 75 |
P value = 0.0293 (Fisher's exact test), Q value = 0.052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 55 | 66 | 81 | 86 |
DEL PEAK 12(9P21.3) MUTATED | 4 | 6 | 10 | 20 |
DEL PEAK 12(9P21.3) WILD-TYPE | 51 | 60 | 71 | 66 |
P value = 7e-05 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 81 | 71 |
DEL PEAK 12(9P21.3) MUTATED | 8 | 4 | 21 |
DEL PEAK 12(9P21.3) WILD-TYPE | 61 | 77 | 50 |
P value = 2e-05 (Fisher's exact test), Q value = 9.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
DEL PEAK 12(9P21.3) MUTATED | 7 | 19 | 7 | 0 |
DEL PEAK 12(9P21.3) WILD-TYPE | 91 | 58 | 9 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 13(10Q21.1) MUTATED | 5 | 0 | 0 | 14 |
DEL PEAK 13(10Q21.1) WILD-TYPE | 109 | 76 | 46 | 38 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 13(10Q21.1) MUTATED | 2 | 15 | 2 |
DEL PEAK 13(10Q21.1) WILD-TYPE | 80 | 56 | 117 |
P value = 0.00169 (Fisher's exact test), Q value = 0.0046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 41 | 35 | 26 | 39 | 26 |
DEL PEAK 13(10Q21.1) MUTATED | 1 | 0 | 0 | 5 | 3 | 0 | 5 |
DEL PEAK 13(10Q21.1) WILD-TYPE | 16 | 22 | 41 | 30 | 23 | 39 | 21 |
P value = 1e-04 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 13(10Q21.1) MUTATED | 0 | 1 | 3 | 15 |
DEL PEAK 13(10Q21.1) WILD-TYPE | 34 | 95 | 63 | 77 |
P value = 7e-04 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 13(10Q21.1) MUTATED | 13 | 1 | 5 |
DEL PEAK 13(10Q21.1) WILD-TYPE | 105 | 122 | 42 |
P value = 0.0359 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 81 | 71 |
DEL PEAK 13(10Q21.1) MUTATED | 3 | 2 | 9 |
DEL PEAK 13(10Q21.1) WILD-TYPE | 66 | 79 | 62 |
P value = 0.00616 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
DEL PEAK 13(10Q21.1) MUTATED | 2 | 10 | 2 | 0 |
DEL PEAK 13(10Q21.1) WILD-TYPE | 96 | 67 | 14 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 14(11Q22.3) MUTATED | 8 | 4 | 1 | 18 |
DEL PEAK 14(11Q22.3) WILD-TYPE | 106 | 72 | 45 | 34 |
P value = 0.00011 (Fisher's exact test), Q value = 0.00043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 14(11Q22.3) MUTATED | 8 | 17 | 5 |
DEL PEAK 14(11Q22.3) WILD-TYPE | 74 | 54 | 114 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 14(11Q22.3) MUTATED | 1 | 5 | 3 | 22 |
DEL PEAK 14(11Q22.3) WILD-TYPE | 33 | 91 | 63 | 70 |
P value = 0.00235 (Fisher's exact test), Q value = 0.0061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 14(11Q22.3) MUTATED | 17 | 5 | 9 |
DEL PEAK 14(11Q22.3) WILD-TYPE | 101 | 118 | 38 |
P value = 0.0026 (Fisher's exact test), Q value = 0.0065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 81 | 71 |
DEL PEAK 14(11Q22.3) MUTATED | 6 | 3 | 15 |
DEL PEAK 14(11Q22.3) WILD-TYPE | 63 | 78 | 56 |
P value = 0.00235 (Fisher's exact test), Q value = 0.0061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
DEL PEAK 14(11Q22.3) MUTATED | 6 | 16 | 2 | 0 |
DEL PEAK 14(11Q22.3) WILD-TYPE | 92 | 61 | 14 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 15(11Q23.3) MUTATED | 6 | 4 | 0 | 19 |
DEL PEAK 15(11Q23.3) WILD-TYPE | 108 | 72 | 46 | 33 |
P value = 9e-05 (Fisher's exact test), Q value = 0.00036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 15(11Q23.3) MUTATED | 7 | 17 | 4 |
DEL PEAK 15(11Q23.3) WILD-TYPE | 75 | 54 | 115 |
P value = 0.00013 (Fisher's exact test), Q value = 0.00049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 15(11Q23.3) MUTATED | 1 | 4 | 3 | 21 |
DEL PEAK 15(11Q23.3) WILD-TYPE | 33 | 92 | 63 | 71 |
P value = 0.00136 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 15(11Q23.3) MUTATED | 17 | 4 | 8 |
DEL PEAK 15(11Q23.3) WILD-TYPE | 101 | 119 | 39 |
P value = 0.00616 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 81 | 71 |
DEL PEAK 15(11Q23.3) MUTATED | 6 | 3 | 14 |
DEL PEAK 15(11Q23.3) WILD-TYPE | 63 | 78 | 57 |
P value = 0.00512 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
DEL PEAK 15(11Q23.3) MUTATED | 6 | 15 | 2 | 0 |
DEL PEAK 15(11Q23.3) WILD-TYPE | 92 | 62 | 14 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 16(14Q11.2) MUTATED | 20 | 1 | 2 | 28 |
DEL PEAK 16(14Q11.2) WILD-TYPE | 94 | 75 | 44 | 24 |
P value = 0.00193 (Fisher's exact test), Q value = 0.0052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 16(14Q11.2) MUTATED | 17 | 19 | 10 |
DEL PEAK 16(14Q11.2) WILD-TYPE | 65 | 52 | 109 |
P value = 0.00785 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 41 | 35 | 26 | 39 | 26 |
DEL PEAK 16(14Q11.2) MUTATED | 3 | 3 | 2 | 8 | 8 | 3 | 9 |
DEL PEAK 16(14Q11.2) WILD-TYPE | 14 | 19 | 39 | 27 | 18 | 36 | 17 |
P value = 2e-05 (Fisher's exact test), Q value = 9.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 16(14Q11.2) MUTATED | 4 | 5 | 13 | 29 |
DEL PEAK 16(14Q11.2) WILD-TYPE | 30 | 91 | 53 | 63 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 16(14Q11.2) MUTATED | 24 | 8 | 19 |
DEL PEAK 16(14Q11.2) WILD-TYPE | 94 | 115 | 28 |
P value = 0.0232 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 81 | 71 |
DEL PEAK 16(14Q11.2) MUTATED | 11 | 8 | 19 |
DEL PEAK 16(14Q11.2) WILD-TYPE | 58 | 73 | 52 |
P value = 0.0282 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
DEL PEAK 16(14Q11.2) MUTATED | 12 | 20 | 4 | 2 |
DEL PEAK 16(14Q11.2) WILD-TYPE | 86 | 57 | 12 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 17(14Q24.2) MUTATED | 21 | 0 | 1 | 28 |
DEL PEAK 17(14Q24.2) WILD-TYPE | 93 | 76 | 45 | 24 |
P value = 0.00016 (Fisher's exact test), Q value = 0.00059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 17(14Q24.2) MUTATED | 18 | 20 | 8 |
DEL PEAK 17(14Q24.2) WILD-TYPE | 64 | 51 | 111 |
P value = 0.00112 (Fisher's exact test), Q value = 0.0033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 41 | 35 | 26 | 39 | 26 |
DEL PEAK 17(14Q24.2) MUTATED | 3 | 4 | 1 | 7 | 9 | 3 | 9 |
DEL PEAK 17(14Q24.2) WILD-TYPE | 14 | 18 | 40 | 28 | 17 | 36 | 17 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 17(14Q24.2) MUTATED | 4 | 4 | 11 | 31 |
DEL PEAK 17(14Q24.2) WILD-TYPE | 30 | 92 | 55 | 61 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 17(14Q24.2) MUTATED | 24 | 7 | 19 |
DEL PEAK 17(14Q24.2) WILD-TYPE | 94 | 116 | 28 |
P value = 0.00697 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 81 | 71 |
DEL PEAK 17(14Q24.2) MUTATED | 12 | 7 | 20 |
DEL PEAK 17(14Q24.2) WILD-TYPE | 57 | 74 | 51 |
P value = 0.00819 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
DEL PEAK 17(14Q24.2) MUTATED | 13 | 21 | 4 | 1 |
DEL PEAK 17(14Q24.2) WILD-TYPE | 85 | 56 | 12 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 18(15Q13.3) MUTATED | 12 | 0 | 3 | 20 |
DEL PEAK 18(15Q13.3) WILD-TYPE | 102 | 76 | 43 | 32 |
P value = 0.00027 (Fisher's exact test), Q value = 0.00094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 18(15Q13.3) MUTATED | 11 | 17 | 5 |
DEL PEAK 18(15Q13.3) WILD-TYPE | 71 | 54 | 114 |
P value = 0.00233 (Fisher's exact test), Q value = 0.0061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 41 | 35 | 26 | 39 | 26 |
DEL PEAK 18(15Q13.3) MUTATED | 2 | 2 | 0 | 5 | 7 | 4 | 8 |
DEL PEAK 18(15Q13.3) WILD-TYPE | 15 | 20 | 41 | 30 | 19 | 35 | 18 |
P value = 2e-05 (Fisher's exact test), Q value = 9.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 18(15Q13.3) MUTATED | 1 | 3 | 7 | 24 |
DEL PEAK 18(15Q13.3) WILD-TYPE | 33 | 93 | 59 | 68 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 18(15Q13.3) MUTATED | 16 | 4 | 15 |
DEL PEAK 18(15Q13.3) WILD-TYPE | 102 | 119 | 32 |
P value = 0.0406 (Fisher's exact test), Q value = 0.067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 81 | 71 |
DEL PEAK 18(15Q13.3) MUTATED | 8 | 6 | 15 |
DEL PEAK 18(15Q13.3) WILD-TYPE | 61 | 75 | 56 |
P value = 0.00318 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
DEL PEAK 18(15Q13.3) MUTATED | 11 | 12 | 6 | 0 |
DEL PEAK 18(15Q13.3) WILD-TYPE | 87 | 65 | 10 | 30 |
P value = 0.00018 (Fisher's exact test), Q value = 0.00066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 19(16Q24.1) MUTATED | 4 | 0 | 0 | 8 |
DEL PEAK 19(16Q24.1) WILD-TYPE | 110 | 76 | 46 | 44 |
P value = 0.00012 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 19(16Q24.1) MUTATED | 3 | 9 | 0 |
DEL PEAK 19(16Q24.1) WILD-TYPE | 79 | 62 | 119 |
P value = 0.0029 (Fisher's exact test), Q value = 0.0071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 19(16Q24.1) MUTATED | 0 | 0 | 3 | 9 |
DEL PEAK 19(16Q24.1) WILD-TYPE | 34 | 96 | 63 | 83 |
P value = 0.00206 (Fisher's exact test), Q value = 0.0055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 19(16Q24.1) MUTATED | 8 | 0 | 4 |
DEL PEAK 19(16Q24.1) WILD-TYPE | 110 | 123 | 43 |
P value = 0.0104 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 81 | 71 |
DEL PEAK 19(16Q24.1) MUTATED | 5 | 0 | 6 |
DEL PEAK 19(16Q24.1) WILD-TYPE | 64 | 81 | 65 |
P value = 2e-05 (Fisher's exact test), Q value = 9.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 20(19P13.3) MUTATED | 4 | 4 | 1 | 14 |
DEL PEAK 20(19P13.3) WILD-TYPE | 110 | 72 | 45 | 38 |
P value = 0.0121 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 20(19P13.3) MUTATED | 4 | 12 | 6 |
DEL PEAK 20(19P13.3) WILD-TYPE | 78 | 59 | 113 |
P value = 0.00922 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 20(19P13.3) MUTATED | 0 | 3 | 8 | 12 |
DEL PEAK 20(19P13.3) WILD-TYPE | 34 | 93 | 58 | 80 |
P value = 0.00421 (Fisher's exact test), Q value = 0.0097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 20(19P13.3) MUTATED | 17 | 4 | 2 |
DEL PEAK 20(19P13.3) WILD-TYPE | 101 | 119 | 45 |
P value = 0.0369 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
DEL PEAK 20(19P13.3) MUTATED | 8 | 12 | 0 | 0 |
DEL PEAK 20(19P13.3) WILD-TYPE | 90 | 65 | 16 | 30 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 21(19Q13.42) MUTATED | 2 | 3 | 2 | 12 |
DEL PEAK 21(19Q13.42) WILD-TYPE | 112 | 73 | 44 | 40 |
P value = 0.0218 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 21(19Q13.42) MUTATED | 5 | 10 | 4 |
DEL PEAK 21(19Q13.42) WILD-TYPE | 77 | 61 | 115 |
P value = 0.0372 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 41 | 35 | 26 | 39 | 26 |
DEL PEAK 21(19Q13.42) MUTATED | 1 | 2 | 0 | 3 | 5 | 4 | 0 |
DEL PEAK 21(19Q13.42) WILD-TYPE | 16 | 20 | 41 | 32 | 21 | 35 | 26 |
P value = 0.00177 (Fisher's exact test), Q value = 0.0048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 21(19Q13.42) MUTATED | 0 | 1 | 6 | 12 |
DEL PEAK 21(19Q13.42) WILD-TYPE | 34 | 95 | 60 | 80 |
P value = 0.0034 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 21(19Q13.42) MUTATED | 14 | 2 | 3 |
DEL PEAK 21(19Q13.42) WILD-TYPE | 104 | 121 | 44 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 22(22Q12.2) MUTATED | 23 | 6 | 2 | 32 |
DEL PEAK 22(22Q12.2) WILD-TYPE | 91 | 70 | 44 | 20 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 22(22Q12.2) MUTATED | 13 | 36 | 11 |
DEL PEAK 22(22Q12.2) WILD-TYPE | 69 | 35 | 108 |
P value = 0.00101 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 41 | 35 | 26 | 39 | 26 |
DEL PEAK 22(22Q12.2) MUTATED | 1 | 3 | 3 | 11 | 13 | 9 | 8 |
DEL PEAK 22(22Q12.2) WILD-TYPE | 16 | 19 | 38 | 24 | 13 | 30 | 18 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 22(22Q12.2) MUTATED | 0 | 7 | 13 | 43 |
DEL PEAK 22(22Q12.2) WILD-TYPE | 34 | 89 | 53 | 49 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 22(22Q12.2) MUTATED | 36 | 9 | 18 |
DEL PEAK 22(22Q12.2) WILD-TYPE | 82 | 114 | 29 |
P value = 0.0376 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 81 | 71 |
DEL PEAK 22(22Q12.2) MUTATED | 18 | 11 | 21 |
DEL PEAK 22(22Q12.2) WILD-TYPE | 51 | 70 | 50 |
P value = 0.00487 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
DEL PEAK 22(22Q12.2) MUTATED | 21 | 21 | 7 | 1 |
DEL PEAK 22(22Q12.2) WILD-TYPE | 77 | 56 | 9 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 23(XP11.4) MUTATED | 12 | 1 | 1 | 20 |
DEL PEAK 23(XP11.4) WILD-TYPE | 102 | 75 | 45 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 23(XP11.4) MUTATED | 8 | 21 | 3 |
DEL PEAK 23(XP11.4) WILD-TYPE | 74 | 50 | 116 |
P value = 0.00065 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 41 | 35 | 26 | 39 | 26 |
DEL PEAK 23(XP11.4) MUTATED | 0 | 1 | 1 | 5 | 7 | 1 | 7 |
DEL PEAK 23(XP11.4) WILD-TYPE | 17 | 21 | 40 | 30 | 19 | 38 | 19 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 23(XP11.4) MUTATED | 0 | 2 | 5 | 27 |
DEL PEAK 23(XP11.4) WILD-TYPE | 34 | 94 | 61 | 65 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 23(XP11.4) MUTATED | 19 | 3 | 12 |
DEL PEAK 23(XP11.4) WILD-TYPE | 99 | 120 | 35 |
P value = 0.00159 (Fisher's exact test), Q value = 0.0044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 81 | 71 |
DEL PEAK 23(XP11.4) MUTATED | 9 | 2 | 14 |
DEL PEAK 23(XP11.4) WILD-TYPE | 60 | 79 | 57 |
P value = 0.00029 (Fisher's exact test), Q value = 0.00099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
DEL PEAK 23(XP11.4) MUTATED | 5 | 16 | 4 | 0 |
DEL PEAK 23(XP11.4) WILD-TYPE | 93 | 61 | 12 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 114 | 76 | 46 | 52 |
DEL PEAK 24(XQ28) MUTATED | 10 | 0 | 1 | 17 |
DEL PEAK 24(XQ28) WILD-TYPE | 104 | 76 | 45 | 35 |
P value = 9e-05 (Fisher's exact test), Q value = 0.00036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 82 | 71 | 119 |
DEL PEAK 24(XQ28) MUTATED | 7 | 16 | 3 |
DEL PEAK 24(XQ28) WILD-TYPE | 75 | 55 | 116 |
P value = 0.0461 (Fisher's exact test), Q value = 0.075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 17 | 22 | 41 | 35 | 26 | 39 | 26 |
DEL PEAK 24(XQ28) MUTATED | 1 | 1 | 1 | 5 | 6 | 1 | 3 |
DEL PEAK 24(XQ28) WILD-TYPE | 16 | 21 | 40 | 30 | 20 | 38 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 96 | 66 | 92 |
DEL PEAK 24(XQ28) MUTATED | 0 | 2 | 4 | 22 |
DEL PEAK 24(XQ28) WILD-TYPE | 34 | 94 | 62 | 70 |
P value = 0.00016 (Fisher's exact test), Q value = 0.00059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 123 | 47 |
DEL PEAK 24(XQ28) MUTATED | 15 | 3 | 10 |
DEL PEAK 24(XQ28) WILD-TYPE | 103 | 120 | 37 |
P value = 0.00736 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 81 | 71 |
DEL PEAK 24(XQ28) MUTATED | 6 | 2 | 12 |
DEL PEAK 24(XQ28) WILD-TYPE | 63 | 79 | 59 |
P value = 0.00538 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 98 | 77 | 16 | 30 |
DEL PEAK 24(XQ28) MUTATED | 5 | 11 | 4 | 0 |
DEL PEAK 24(XQ28) WILD-TYPE | 93 | 66 | 12 | 30 |
-
Copy number data file = all_lesions.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRP-TP/15087100/transformed.cor.cli.txt
-
Molecular subtype file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRP-TP/15098835/KIRP-TP.transferedmergedcluster.txt
-
Number of patients = 288
-
Number of significantly focal cnvs = 31
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.