Correlation between gene mutation status and molecular subtypes
Lung Adenocarcinoma (Primary solid tumor)
02 April 2015  |  analyses__2015_04_02
Maintainer Information
Citation Information
doi:10.7908/C1K07398
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2015): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C1K07398
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 393 genes and 12 molecular subtypes across 481 patients, 93 significant findings detected with P value < 0.05 and Q value < 0.25.

  • TP53 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KRAS mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • KEAP1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • EGFR mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SMARCA4 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • STK11 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • RB1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MGA mutation correlated to 'MRNASEQ_CNMF'.

  • ATM mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • COL5A2 mutation correlated to 'RPPA_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC4A3 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SP100 mutation correlated to 'MRNASEQ_CNMF'.

  • STRA8 mutation correlated to 'CN_CNMF'.

  • DSC2 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • LTBP1 mutation correlated to 'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C10ORF71 mutation correlated to 'MIRSEQ_CNMF'.

  • PTGIS mutation correlated to 'MRNASEQ_CNMF'.

  • DLX5 mutation correlated to 'MIRSEQ_CNMF'.

  • UROC1 mutation correlated to 'MIRSEQ_CNMF'.

  • DST mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • PTPRU mutation correlated to 'MIRSEQ_CNMF'.

  • LAMA4 mutation correlated to 'METHLYATION_CNMF'.

  • CDK12 mutation correlated to 'METHLYATION_CNMF'.

  • SATB2 mutation correlated to 'MRNASEQ_CNMF'.

  • ADAMTS2 mutation correlated to 'METHLYATION_CNMF'.

  • C1ORF177 mutation correlated to 'CN_CNMF'.

  • COL15A1 mutation correlated to 'MIRSEQ_CNMF'.

  • COL3A1 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PHKA1 mutation correlated to 'CN_CNMF'.

  • FER mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.

  • KDR mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • LDB2 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • LARS mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • BTAF1 mutation correlated to 'METHLYATION_CNMF'.

  • COL12A1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • COL7A1 mutation correlated to 'MIRSEQ_CNMF'.

  • CHD5 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • HSPA1L mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • UHRF1BP1L mutation correlated to 'CN_CNMF'.

  • CARD6 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CSNK1E mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.

  • COL19A1 mutation correlated to 'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • HYDIN mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • CACNA2D4 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • MYOF mutation correlated to 'MRNASEQ_CNMF'.

  • SELE mutation correlated to 'MIRSEQ_CNMF'.

  • ADAM23 mutation correlated to 'MIRSEQ_CNMF'.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 393 genes and 12 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 93 significant findings detected.

Clinical
Features 		MRNA
CNMF 		MRNA
CHIERARCHICAL 		CN
CNMF 		METHLYATION
CNMF 		RPPA
CNMF 		RPPA
CHIERARCHICAL 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
TP53 256 (53%) 225 0.0249
(0.497) 		0.15
(0.791) 		1e-05
(0.00295) 		0.00066
(0.0741) 		0.00807
(0.317) 		0.00019
(0.0314) 		1e-05
(0.00295) 		1e-05
(0.00295) 		1e-05
(0.00295) 		1e-05
(0.00295) 		0.887
(1.00) 		1e-05
(0.00295)
KEAP1 84 (17%) 397 5e-05
(0.0112) 		1e-05
(0.00295) 		0.0005
(0.0637) 		0.00098
(0.0963) 		1e-05
(0.00295) 		1e-05
(0.00295) 		0.124
(0.754) 		0.0001
(0.0196) 		0.0535
(0.624) 		0.0006
(0.0702)
STK11 77 (16%) 404 1e-05
(0.00295) 		0.00057
(0.0689) 		0.00404
(0.232) 		2e-05
(0.00524) 		1e-05
(0.00295) 		1e-05
(0.00295) 		0.44
(1.00) 		0.011
(0.348) 		0.208
(0.851) 		0.118
(0.734)
KRAS 150 (31%) 331 0.897
(1.00) 		1
(1.00) 		0.00137
(0.121) 		0.00236
(0.174) 		0.0241
(0.494) 		0.139
(0.779) 		0.00997
(0.336) 		1e-05
(0.00295) 		0.00154
(0.13) 		7e-05
(0.015) 		0.443
(1.00) 		0.154
(0.798)
EGFR 67 (14%) 414 0.00027
(0.0398) 		0.433
(1.00) 		0.00724
(0.304) 		0.00018
(0.0314) 		1e-05
(0.00295) 		2e-05
(0.00524) 		0.00504
(0.252) 		0.0313
(0.537) 		0.0701
(0.653) 		0.00257
(0.185)
SMARCA4 38 (8%) 443 0.491
(1.00) 		1e-05
(0.00295) 		0.757
(1.00) 		0.78
(1.00) 		3e-05
(0.00707) 		1e-05
(0.00295) 		0.00542
(0.258) 		0.00034
(0.0486) 		0.0511
(0.624) 		3e-05
(0.00707)
ATM 42 (9%) 439 0.00022
(0.0335) 		0.00076
(0.0796) 		0.0992
(0.731) 		0.164
(0.816) 		0.00196
(0.155) 		0.00061
(0.0702) 		0.892
(1.00) 		0.0536
(0.624) 		0.511
(1.00) 		0.916
(1.00)
COL5A2 48 (10%) 433 0.0114
(0.353) 		0.072
(0.654) 		0.00263
(0.185) 		0.633
(1.00) 		0.0588
(0.624) 		0.0757
(0.669) 		0.00049
(0.0637) 		0.00123
(0.114) 		0.336
(0.974) 		0.0105
(0.342)
LTBP1 46 (10%) 435 0.898
(1.00) 		0.283
(0.939) 		0.0836
(0.684) 		0.453
(1.00) 		0.419
(1.00) 		0.293
(0.948) 		0.0333
(0.543) 		0.181
(0.826) 		0.00277
(0.186) 		0.00388
(0.229) 		0.476
(1.00) 		0.00045
(0.0606)
CARD6 14 (3%) 467 0.0556
(0.624) 		0.00851
(0.329) 		0.0133
(0.371) 		0.00097
(0.0963) 		0.0165
(0.402) 		0.00014
(0.0254) 		0.209
(0.852) 		0.00262
(0.185)
COL19A1 39 (8%) 442 0.326
(0.966) 		0.00276
(0.186) 		0.0602
(0.624) 		0.225
(0.879) 		0.0458
(0.611) 		0.0586
(0.624) 		0.00279
(0.186) 		0.00162
(0.134) 		0.474
(1.00) 		0.00668
(0.289)
COL3A1 53 (11%) 428 0.641
(1.00) 		0.792
(1.00) 		0.305
(0.951) 		0.614
(1.00) 		0.417
(1.00) 		0.0964
(0.728) 		0.00919
(0.331) 		0.271
(0.932) 		0.00114
(0.108) 		0.00988
(0.335) 		0.366
(0.998) 		0.00291
(0.187)
FER 13 (3%) 468 0.575
(1.00) 		0.00068
(0.0746) 		0.173
(0.826) 		0.00291
(0.187) 		0.266
(0.929) 		0.102
(0.731) 		0.343
(0.974) 		0.377
(1.00) 		0.0104
(0.342) 		0.649
(1.00)
LARS 8 (2%) 473 0.00463
(0.244) 		0.002
(0.155) 		0.0182
(0.423) 		0.404
(1.00) 		0.0518
(0.624) 		0.0109
(0.348) 		0.0056
(0.262) 		0.0111
(0.349) 		0.431
(1.00) 		0.141
(0.78)
CSNK1E 6 (1%) 475 0.577
(1.00) 		0.00441
(0.244) 		0.79
(1.00) 		1
(1.00) 		0.0046
(0.244) 		0.315
(0.961) 		0.58
(1.00) 		0.72
(1.00) 		0.235
(0.883) 		0.713
(1.00)
RB1 26 (5%) 455 0.435
(1.00) 		0.0808
(0.677) 		0.341
(0.974) 		0.578
(1.00) 		0.0722
(0.654) 		0.0001
(0.0196) 		0.151
(0.792) 		0.0265
(0.504) 		0.0575
(0.624) 		0.96
(1.00)
MGA 40 (8%) 441 0.267
(0.932) 		0.0557
(0.624) 		0.737
(1.00) 		0.149
(0.79) 		0.0028
(0.186) 		0.154
(0.798) 		0.0314
(0.537) 		0.0676
(0.648) 		0.328
(0.97) 		0.0805
(0.676)
SLC4A3 18 (4%) 463 1
(1.00) 		0.372
(1) 		0.567
(1.00) 		0.59
(1.00) 		0.131
(0.77) 		0.453
(1.00) 		0.148
(0.786) 		0.75
(1.00) 		0.343
(0.974) 		0.00343
(0.21)
SP100 16 (3%) 465 0.819
(1.00) 		0.846
(1.00) 		0.83
(1.00) 		0.872
(1.00) 		0.00054
(0.067) 		0.105
(0.731) 		0.0438
(0.602) 		0.0893
(0.709) 		0.0765
(0.673) 		0.514
(1.00)
STRA8 8 (2%) 473 0.00492
(0.25) 		0.077
(0.673) 		0.105
(0.731) 		0.0344
(0.547) 		0.0129
(0.371) 		0.118
(0.734) 		0.526
(1.00) 		0.238
(0.883)
DSC2 20 (4%) 461 0.578
(1.00) 		0.0781
(0.673) 		0.00737
(0.305) 		0.00373
(0.223) 		0.631
(1.00) 		0.878
(1.00) 		0.194
(0.842) 		0.34
(0.974) 		0.062
(0.633) 		0.175
(0.826)
C10ORF71 17 (4%) 464 0.309
(0.952) 		0.0644
(0.644) 		0.242
(0.89) 		0.868
(1.00) 		0.00297
(0.187) 		0.154
(0.798) 		0.252
(0.903) 		0.0766
(0.673)
PTGIS 11 (2%) 470 0.338
(0.974) 		0.273
(0.932) 		0.00081
(0.083) 		0.489
(1.00) 		0.0683
(0.648) 		0.134
(0.772) 		1
(1.00) 		0.701
(1.00)
DLX5 13 (3%) 468 0.753
(1.00) 		1
(1.00) 		0.453
(1.00) 		0.249
(0.903) 		0.356
(0.99) 		0.719
(1.00) 		0.00432
(0.243) 		0.137
(0.776) 		0.148
(0.786) 		0.256
(0.91)
UROC1 15 (3%) 466 0.961
(1.00) 		0.565
(1.00) 		0.191
(0.837) 		0.281
(0.937) 		0.188
(0.833) 		0.668
(1.00) 		0.00136
(0.121) 		0.195
(0.842) 		1
(1.00) 		0.189
(0.835)
DST 89 (19%) 392 0.638
(1.00) 		1
(1.00) 		0.169
(0.824) 		0.0591
(0.624) 		0.275
(0.932) 		0.507
(1.00) 		0.618
(1.00) 		0.418
(1.00) 		0.0471
(0.617) 		0.00039
(0.0541) 		0.578
(1.00) 		0.0438
(0.602)
PTPRU 18 (4%) 463 0.0135
(0.371) 		0.109
(0.731) 		0.877
(1.00) 		0.342
(0.974) 		0.012
(0.36) 		0.0601
(0.624) 		0.00298
(0.187) 		0.00729
(0.304) 		1
(1.00) 		0.188
(0.833)
LAMA4 34 (7%) 447 0.00514
(0.252) 		0.0002
(0.0314) 		0.846
(1.00) 		0.462
(1.00) 		0.316
(0.961) 		0.148
(0.786) 		0.0554
(0.624) 		0.0174
(0.414) 		0.0556
(0.624) 		0.0314
(0.537)
CDK12 15 (3%) 466 0.0426
(0.595) 		0.00213
(0.159) 		0.614
(1.00) 		0.382
(1.00) 		0.275
(0.932) 		0.123
(0.749) 		0.398
(1.00) 		0.196
(0.842) 		0.857
(1.00) 		0.0102
(0.338)
SATB2 31 (6%) 450 0.182
(0.826) 		0.966
(1.00) 		0.734
(1.00) 		0.335
(0.974) 		0.00075
(0.0796) 		0.0191
(0.432) 		0.469
(1.00) 		0.299
(0.951) 		0.172
(0.826) 		0.113
(0.734)
ADAMTS2 39 (8%) 442 0.2
(0.842) 		0.00362
(0.219) 		0.73
(1.00) 		0.0176
(0.414) 		0.472
(1.00) 		0.818
(1.00) 		0.0806
(0.676) 		0.0507
(0.624) 		0.109
(0.731) 		0.789
(1.00)
C1ORF177 9 (2%) 472 0.00138
(0.121) 		0.0513
(0.624) 		0.839
(1.00) 		0.0584
(0.624) 		0.5
(1.00) 		0.249
(0.903) 		0.252
(0.903) 		0.0952
(0.725)
COL15A1 31 (6%) 450 0.525
(1.00) 		0.538
(1.00) 		0.276
(0.932) 		0.433
(1.00) 		0.746
(1.00) 		0.49
(1.00) 		0.168
(0.824) 		0.176
(0.826) 		0.00184
(0.15) 		0.0484
(0.619) 		0.301
(0.951) 		0.182
(0.826)
PHKA1 12 (2%) 469 0.00145
(0.124) 		0.343
(0.974) 		0.331
(0.974) 		0.342
(0.974) 		0.134
(0.772) 		0.356
(0.99) 		0.399
(1.00) 		0.277
(0.932) 		0.417
(1.00) 		0.0527
(0.624)
KDR 43 (9%) 438 0.675
(1.00) 		0.44
(1.00) 		0.414
(1.00) 		0.909
(1.00) 		0.113
(0.734) 		0.705
(1.00) 		0.308
(0.952) 		0.00113
(0.108) 		0.04
(0.582) 		0.0413
(0.584)
LDB2 19 (4%) 462 0.0171
(0.411) 		0.104
(0.731) 		0.182
(0.826) 		0.444
(1.00) 		0.611
(1.00) 		0.487
(1.00) 		0.0323
(0.541) 		0.00198
(0.155) 		0.201
(0.842) 		0.492
(1.00)
BTAF1 23 (5%) 458 0.0587
(0.624) 		0.00326
(0.202) 		1
(1.00) 		0.644
(1.00) 		0.0713
(0.653) 		0.0357
(0.558) 		0.0803
(0.676) 		0.0192
(0.432) 		0.78
(1.00) 		0.488
(1.00)
COL12A1 54 (11%) 427 0.845
(1.00) 		1
(1.00) 		0.00676
(0.29) 		0.00513
(0.252) 		0.253
(0.904) 		0.129
(0.763) 		0.1
(0.731) 		0.0485
(0.619) 		0.00914
(0.331) 		0.00014
(0.0254) 		0.557
(1.00) 		0.0138
(0.372)
COL7A1 33 (7%) 448 0.492
(1.00) 		0.656
(1.00) 		0.245
(0.895) 		0.598
(1.00) 		0.634
(1.00) 		0.715
(1.00) 		0.0042
(0.239) 		0.76
(1.00) 		0.052
(0.624) 		0.461
(1.00)
CHD5 30 (6%) 451 0.158
(0.804) 		0.299
(0.951) 		0.611
(1.00) 		1
(1.00) 		0.664
(1.00) 		0.724
(1.00) 		0.103
(0.731) 		0.0191
(0.432) 		0.189
(0.833) 		0.00465
(0.244)
HSPA1L 10 (2%) 471 0.195
(0.842) 		1
(1.00) 		0.83
(1.00) 		0.955
(1.00) 		0.516
(1.00) 		0.781
(1.00) 		0.37
(1) 		0.00493
(0.25) 		0.613
(1.00) 		0.298
(0.951)
UHRF1BP1L 16 (3%) 465 0.00393
(0.229) 		0.439
(1.00) 		0.345
(0.975) 		0.881
(1.00) 		0.189
(0.833) 		0.182
(0.826) 		0.0669
(0.648) 		0.278
(0.932) 		0.485
(1.00) 		0.924
(1.00)
HYDIN 49 (10%) 432 0.848
(1.00) 		1
(1.00) 		0.226
(0.879) 		0.22
(0.873) 		0.431
(1.00) 		0.45
(1.00) 		0.0626
(0.635) 		0.437
(1.00) 		0.0651
(0.648) 		0.00474
(0.246) 		0.44
(1.00) 		0.0102
(0.338)
CACNA2D4 24 (5%) 457 0.617
(1.00) 		0.528
(1.00) 		0.462
(1.00) 		0.445
(1.00) 		0.525
(1.00) 		0.514
(1.00) 		0.0548
(0.624) 		0.0108
(0.348) 		0.00209
(0.159) 		0.029
(0.529)
MYOF 17 (4%) 464 0.0136
(0.371) 		0.625
(1.00) 		0.283
(0.939) 		0.0556
(0.624) 		0.00464
(0.244) 		0.022
(0.472) 		0.00771
(0.313) 		0.157
(0.8) 		0.202
(0.842) 		0.65
(1.00)
SELE 12 (2%) 469 0.129
(0.763) 		0.28
(0.935) 		0.555
(1.00) 		0.071
(0.653) 		0.434
(1.00) 		0.0147
(0.386) 		0.0045
(0.244) 		0.931
(1.00) 		0.256
(0.91) 		0.409
(1.00)
ADAM23 27 (6%) 454 0.167
(0.824) 		0.549
(1.00) 		0.284
(0.939) 		0.0218
(0.472) 		0.39
(1.00) 		0.349
(0.979) 		0.0002
(0.0314) 		0.0409
(0.584) 		0.809
(1.00) 		0.024
(0.494)
RBM10 33 (7%) 448 0.642
(1.00) 		0.0576
(0.624) 		0.0432
(0.602) 		0.449
(1.00) 		0.924
(1.00) 		0.773
(1.00) 		0.892
(1.00) 		0.0541
(0.624) 		0.425
(1.00) 		0.65
(1.00)
ARID1A 30 (6%) 451 0.72
(1.00) 		0.778
(1.00) 		0.77
(1.00) 		0.806
(1.00) 		0.442
(1.00) 		0.879
(1.00) 		0.245
(0.895) 		0.078
(0.673) 		0.0549
(0.624) 		0.111
(0.732)
NF1 55 (11%) 426 0.636
(1.00) 		0.792
(1.00) 		0.535
(1.00) 		0.93
(1.00) 		0.834
(1.00) 		0.259
(0.914) 		0.0617
(0.633) 		0.259
(0.914) 		0.109
(0.731) 		0.353
(0.985) 		0.108
(0.731) 		0.086
(0.69)
BRAF 39 (8%) 442 0.146
(0.784) 		1
(1.00) 		0.627
(1.00) 		0.0793
(0.675) 		0.584
(1.00) 		0.862
(1.00) 		0.273
(0.932) 		0.384
(1.00) 		0.592
(1.00) 		0.033
(0.543) 		0.919
(1.00) 		0.515
(1.00)
CHRND 18 (4%) 463 0.21
(0.852) 		0.684
(1.00) 		0.613
(1.00) 		0.129
(0.763) 		0.263
(0.923) 		0.0958
(0.725) 		0.182
(0.826) 		0.062
(0.633) 		0.563
(1.00) 		0.275
(0.932)
MET 21 (4%) 460 0.0852
(0.687) 		0.729
(1.00) 		0.775
(1.00) 		0.112
(0.734) 		0.523
(1.00) 		0.628
(1.00) 		0.0866
(0.693) 		0.211
(0.852) 		0.47
(1.00) 		0.168
(0.824)
CDKN2A 16 (3%) 465 0.947
(1.00) 		0.538
(1.00) 		0.733
(1.00) 		0.85
(1.00) 		0.0593
(0.624) 		0.233
(0.882) 		0.71
(1.00) 		0.856
(1.00) 		0.23
(0.879) 		0.706
(1.00)
U2AF1 12 (2%) 469 0.759
(1.00) 		1
(1.00) 		0.285
(0.94) 		0.808
(1.00) 		0.026
(0.504) 		0.197
(0.842) 		0.0214
(0.468) 		0.749
(1.00) 		0.042
(0.591) 		0.691
(1.00)
SETD2 30 (6%) 451 0.212
(0.853) 		0.376
(1.00) 		0.695
(1.00) 		0.175
(0.826) 		0.104
(0.731) 		0.227
(0.879) 		0.558
(1.00) 		0.97
(1.00) 		0.0131
(0.371) 		0.0546
(0.624)
DNMT3A 19 (4%) 462 0.607
(1.00) 		0.488
(1.00) 		0.171
(0.826) 		0.352
(0.984) 		0.587
(1.00) 		0.56
(1.00) 		0.342
(0.974) 		0.11
(0.731) 		0.0095
(0.334) 		0.00782
(0.315)
ERBB2 11 (2%) 470 0.684
(1.00) 		0.098
(0.731) 		0.895
(1.00) 		0.677
(1.00) 		0.513
(1.00) 		0.139
(0.779) 		0.73
(1.00) 		0.242
(0.89) 		0.5
(1.00) 		0.224
(0.879)
NFE2L2 13 (3%) 468 0.609
(1.00) 		0.579
(1.00) 		1
(1.00) 		0.457
(1.00) 		0.0739
(0.66) 		0.0384
(0.577) 		1
(1.00) 		0.196
(0.842) 		0.658
(1.00) 		0.758
(1.00)
PPP3CA 12 (2%) 469 0.927
(1.00) 		0.297
(0.951) 		0.464
(1.00) 		0.0162
(0.402) 		0.141
(0.78) 		0.238
(0.883) 		0.456
(1.00) 		0.252
(0.903)
FCRLA 15 (3%) 466 0.175
(0.826) 		0.8
(1.00) 		0.66
(1.00) 		0.51
(1.00) 		0.846
(1.00) 		0.374
(1) 		1
(1.00) 		0.843
(1.00) 		0.642
(1.00) 		0.202
(0.842)
ARID2 24 (5%) 457 0.791
(1.00) 		0.64
(1.00) 		0.596
(1.00) 		0.561
(1.00) 		0.137
(0.776) 		0.0912
(0.717) 		0.0798
(0.675) 		0.286
(0.941) 		0.127
(0.759) 		0.385
(1.00)
SLAMF9 12 (2%) 469 0.0091
(0.331) 		0.0403
(0.583) 		0.831
(1.00) 		0.575
(1.00) 		0.2
(0.842) 		0.601
(1.00) 		0.0823
(0.683) 		0.0124
(0.37) 		0.603
(1.00) 		0.622
(1.00)
RPL5 8 (2%) 473 1
(1.00) 		0.743
(1.00) 		0.251
(0.903) 		0.105
(0.731) 		0.739
(1.00) 		0.722
(1.00) 		0.422
(1.00) 		0.369
(1) 		0.473
(1.00) 		1
(1.00)
AACS 18 (4%) 463 0.809
(1.00) 		0.773
(1.00) 		1
(1.00) 		0.336
(0.974) 		0.37
(1) 		0.735
(1.00) 		0.231
(0.879) 		0.932
(1.00) 		0.642
(1.00) 		0.94
(1.00)
ITGBL1 19 (4%) 462 0.428
(1.00) 		0.55
(1.00) 		0.829
(1.00) 		0.618
(1.00) 		0.0521
(0.624) 		0.0681
(0.648) 		0.0175
(0.414) 		0.041
(0.584) 		0.148
(0.786) 		0.237
(0.883)
NLRP6 10 (2%) 471 0.132
(0.772) 		0.443
(1.00) 		0.73
(1.00) 		0.0188
(0.431) 		0.137
(0.776) 		0.078
(0.673) 		0.561
(1.00) 		0.0917
(0.717)
STIM1 9 (2%) 472 0.0158
(0.398) 		1
(1.00) 		0.699
(1.00) 		0.268
(0.932) 		0.119
(0.734) 		0.19
(0.837) 		0.435
(1.00) 		0.885
(1.00)
NCKAP1L 19 (4%) 462 0.305
(0.951) 		0.25
(0.903) 		0.909
(1.00) 		0.114
(0.734) 		0.0441
(0.602) 		0.213
(0.855) 		0.0342
(0.547) 		0.0585
(0.624) 		0.462
(1.00) 		0.772
(1.00)
CTNNB1 19 (4%) 462 0.432
(1.00) 		0.282
(0.937) 		0.34
(0.974) 		0.102
(0.731) 		0.271
(0.932) 		0.409
(1.00) 		0.0249
(0.497) 		0.79
(1.00) 		0.26
(0.918) 		0.768
(1.00)
PLEKHB2 9 (2%) 472 0.0367
(0.566) 		0.44
(1.00) 		0.789
(1.00) 		0.377
(1.00) 		0.368
(1) 		0.387
(1.00) 		0.138
(0.777) 		0.0362
(0.564) 		0.691
(1.00) 		0.0277
(0.52)
G3BP1 8 (2%) 473 0.177
(0.826) 		0.693
(1.00) 		0.83
(1.00) 		0.573
(1.00) 		0.5
(1.00) 		0.831
(1.00) 		0.897
(1.00) 		0.819
(1.00) 		0.688
(1.00) 		0.651
(1.00)
TLR9 10 (2%) 471 0.792
(1.00) 		0.531
(1.00) 		0.213
(0.856) 		0.263
(0.922) 		0.172
(0.826) 		0.0933
(0.72) 		0.0304
(0.533) 		0.9
(1.00)
PDE6A 16 (3%) 465 0.322
(0.964) 		0.4
(1.00) 		1
(1.00) 		0.682
(1.00) 		0.0249
(0.497) 		0.0259
(0.504) 		0.0185
(0.428) 		0.0304
(0.533) 		0.695
(1.00) 		0.575
(1.00)
DUSP22 17 (4%) 464 0.844
(1.00) 		0.269
(0.932) 		0.982
(1.00) 		0.431
(1.00) 		0.908
(1.00) 		0.473
(1.00) 		0.0268
(0.506) 		0.237
(0.883) 		0.103
(0.731) 		0.366
(0.999) 		0.732
(1.00) 		0.931
(1.00)
MMP19 10 (2%) 471 0.385
(1.00) 		0.444
(1.00) 		0.617
(1.00) 		0.824
(1.00) 		1
(1.00) 		0.484
(1.00) 		0.645
(1.00) 		0.49
(1.00) 		0.406
(1.00) 		1
(1.00)
APC 20 (4%) 461 0.88
(1.00) 		0.642
(1.00) 		0.896
(1.00) 		1
(1.00) 		0.0828
(0.683) 		0.22
(0.873) 		0.0618
(0.633) 		0.0513
(0.624) 		0.83
(1.00) 		0.274
(0.932)
A2M 20 (4%) 461 0.099
(0.731) 		0.626
(1.00) 		0.231
(0.879) 		0.896
(1.00) 		0.0511
(0.624) 		0.0524
(0.624) 		0.00535
(0.257) 		0.133
(0.772) 		0.203
(0.843) 		0.132
(0.772)
CD244 12 (2%) 469 0.261
(0.918) 		0.661
(1.00) 		0.613
(1.00) 		0.637
(1.00) 		0.375
(1) 		0.258
(0.914) 		0.0754
(0.669) 		0.0131
(0.371) 		1
(1.00) 		0.595
(1.00)
SRPX 16 (3%) 465 0.701
(1.00) 		0.938
(1.00) 		0.415
(1.00) 		0.0936
(0.72) 		0.81
(1.00) 		0.729
(1.00) 		0.277
(0.932) 		0.445
(1.00) 		1
(1.00) 		0.336
(0.974)
GAGE2D 5 (1%) 476 0.479
(1.00) 		0.78
(1.00) 		0.612
(1.00) 		0.158
(0.805) 		0.332
(0.974) 		0.659
(1.00) 		0.137
(0.776) 		0.608
(1.00) 		1
(1.00) 		0.781
(1.00)
ADNP2 24 (5%) 457 0.178
(0.826) 		0.408
(1.00) 		0.774
(1.00) 		0.804
(1.00) 		0.418
(1.00) 		0.813
(1.00) 		0.0451
(0.611) 		0.801
(1.00) 		0.214
(0.856) 		0.362
(0.994)
GLDC 21 (4%) 460 0.672
(1.00) 		0.313
(0.957) 		0.894
(1.00) 		0.597
(1.00) 		0.0528
(0.624) 		0.447
(1.00) 		0.0536
(0.624) 		0.0282
(0.525) 		0.608
(1.00) 		0.803
(1.00)
PIK3CA 28 (6%) 453 0.369
(1) 		0.304
(0.951) 		0.091
(0.717) 		0.253
(0.904) 		0.05
(0.624) 		0.025
(0.497) 		0.877
(1.00) 		0.558
(1.00) 		0.16
(0.808) 		0.165
(0.818)
MED12 37 (8%) 444 0.62
(1.00) 		0.109
(0.731) 		0.515
(1.00) 		0.322
(0.964) 		0.0396
(0.58) 		0.316
(0.961) 		0.0378
(0.575) 		0.178
(0.826) 		0.102
(0.731) 		0.078
(0.673)
TRERF1 18 (4%) 463 0.156
(0.8) 		0.0597
(0.624) 		0.441
(1.00) 		0.735
(1.00) 		0.0118
(0.358) 		0.304
(0.951) 		0.0684
(0.648) 		0.298
(0.951) 		0.549
(1.00) 		0.197
(0.842)
BTK 16 (3%) 465 0.476
(1.00) 		0.618
(1.00) 		0.615
(1.00) 		0.682
(1.00) 		0.769
(1.00) 		0.319
(0.963) 		0.0917
(0.717) 		0.489
(1.00) 		0.484
(1.00) 		0.855
(1.00)
KIF18B 4 (1%) 477 0.291
(0.947) 		0.394
(1.00) 		0.0461
(0.611) 		0.473
(1.00) 		0.753
(1.00) 		1
(1.00) 		0.452
(1.00)
WDR66 14 (3%) 467 0.0558
(0.624) 		0.0458
(0.611) 		0.0294
(0.529) 		0.322
(0.964) 		0.548
(1.00) 		0.49
(1.00) 		0.157
(0.8) 		0.511
(1.00) 		0.128
(0.763) 		0.156
(0.8)
PTEN 7 (1%) 474 0.854
(1.00) 		0.877
(1.00) 		0.0579
(0.624) 		0.773
(1.00) 		0.0341
(0.547) 		0.151
(0.792) 		0.271
(0.932) 		0.907
(1.00) 		0.582
(1.00) 		0.736
(1.00)
KLHL5 14 (3%) 467 0.42
(1.00) 		0.938
(1.00) 		0.0136
(0.371) 		0.479
(1.00) 		0.431
(1.00) 		0.798
(1.00) 		0.94
(1.00) 		0.648
(1.00) 		0.673
(1.00) 		0.766
(1.00)
FAM65C 14 (3%) 467 0.565
(1.00) 		0.831
(1.00) 		0.127
(0.76) 		0.0722
(0.654) 		0.943
(1.00) 		0.688
(1.00) 		0.108
(0.731) 		0.483
(1.00) 		0.793
(1.00) 		0.133
(0.772)
KRTAP5-10 12 (2%) 469 0.393
(1.00) 		0.168
(0.824) 		0.71
(1.00) 		0.926
(1.00) 		0.553
(1.00) 		0.831
(1.00) 		0.104
(0.731) 		0.649
(1.00)
PAK1 9 (2%) 472 0.353
(0.985) 		0.637
(1.00) 		0.0114
(0.353) 		0.17
(0.824) 		0.303
(0.951) 		0.257
(0.913) 		0.913
(1.00) 		0.84
(1.00) 		1
(1.00) 		1
(1.00)
ABCC4 19 (4%) 462 0.745
(1.00) 		0.408
(1.00) 		1
(1.00) 		0.791
(1.00) 		0.917
(1.00) 		0.693
(1.00) 		0.669
(1.00) 		0.369
(1) 		0.856
(1.00) 		0.916
(1.00)
HERC4 13 (3%) 468 0.331
(0.974) 		0.864
(1.00) 		1
(1.00) 		0.516
(1.00) 		0.0552
(0.624) 		0.64
(1.00) 		0.705
(1.00) 		0.682
(1.00) 		0.325
(0.966) 		0.132
(0.772)
DMRTB1 10 (2%) 471 0.23
(0.879) 		0.441
(1.00) 		0.342
(0.974) 		0.0713
(0.653) 		0.165
(0.818) 		0.398
(1.00) 		0.153
(0.794) 		0.214
(0.856) 		0.316
(0.961) 		0.109
(0.731)
C5AR1 6 (1%) 475 0.649
(1.00) 		0.294
(0.948) 		1
(1.00) 		0.0154
(0.396) 		0.226
(0.879) 		0.59
(1.00) 		0.117
(0.734) 		0.202
(0.842) 		1
(1.00) 		0.11
(0.731)
SLC26A10 14 (3%) 467 0.582
(1.00) 		0.663
(1.00) 		0.0581
(0.624) 		0.07
(0.653) 		0.888
(1.00) 		0.629
(1.00) 		0.177
(0.826) 		0.382
(1.00) 		0.111
(0.731) 		0.255
(0.91)
GPATCH4 8 (2%) 473 0.064
(0.644) 		0.184
(0.826) 		0.361
(0.993) 		0.44
(1.00) 		0.0285
(0.528) 		0.0318
(0.539) 		0.333
(0.974) 		0.45
(1.00)
NR4A2 17 (4%) 464 0.658
(1.00) 		0.429
(1.00) 		1
(1.00) 		0.0713
(0.653) 		0.00944
(0.334) 		0.0997
(0.731) 		0.356
(0.99) 		0.127
(0.76) 		0.273
(0.932) 		0.233
(0.882)
ABHD12B 7 (1%) 474 0.221
(0.874) 		0.228
(0.879) 		1
(1.00) 		0.296
(0.951) 		1
(1.00) 		0.835
(1.00) 		0.0821
(0.683) 		0.762
(1.00) 		0.763
(1.00) 		0.398
(1.00)
FNDC7 10 (2%) 471 0.477
(1.00) 		0.362
(0.994) 		0.794
(1.00) 		0.277
(0.932) 		0.554
(1.00) 		0.897
(1.00) 		0.436
(1.00) 		0.513
(1.00)
RIT1 8 (2%) 473 0.0309
(0.537) 		0.876
(1.00) 		0.828
(1.00) 		0.281
(0.937) 		0.909
(1.00) 		0.173
(0.826) 		0.269
(0.932) 		1
(1.00) 		0.497
(1.00) 		0.27
(0.932)
ASCL3 7 (1%) 474 0.388
(1.00) 		0.386
(1.00) 		0.79
(1.00) 		0.554
(1.00) 		0.274
(0.932) 		0.908
(1.00) 		0.0512
(0.624) 		0.123
(0.749) 		0.851
(1.00) 		0.505
(1.00)
CD84 6 (1%) 475 0.373
(1) 		0.0578
(0.624) 		0.454
(1.00) 		0.688
(1.00) 		0.499
(1.00) 		0.335
(0.974) 		0.851
(1.00) 		0.711
(1.00)
GYPC 6 (1%) 475 0.0108
(0.348) 		0.229
(0.879) 		0.225
(0.879) 		0.955
(1.00) 		0.676
(1.00) 		0.594
(1.00) 		0.203
(0.843) 		0.444
(1.00) 		0.583
(1.00) 		0.402
(1.00)
MYH7 52 (11%) 429 0.847
(1.00) 		1
(1.00) 		0.446
(1.00) 		0.0648
(0.647) 		0.755
(1.00) 		0.155
(0.798) 		0.885
(1.00) 		0.68
(1.00) 		0.102
(0.731) 		0.0937
(0.72) 		0.399
(1.00) 		0.535
(1.00)
HSF5 13 (3%) 468 0.184
(0.826) 		0.58
(1.00) 		0.365
(0.998) 		0.442
(1.00) 		0.468
(1.00) 		0.427
(1.00) 		0.145
(0.784) 		0.582
(1.00) 		0.644
(1.00) 		0.925
(1.00)
HSPA8 9 (2%) 472 0.155
(0.798) 		0.207
(0.849) 		1
(1.00) 		0.298
(0.951) 		0.697
(1.00) 		0.222
(0.879) 		0.00529
(0.257) 		0.157
(0.8) 		0.292
(0.948) 		0.883
(1.00)
HTRA1 10 (2%) 471 0.247
(0.899) 		0.179
(0.826) 		1
(1.00) 		0.762
(1.00) 		0.841
(1.00) 		0.0797
(0.675) 		1
(1.00) 		0.758
(1.00)
SRMS 10 (2%) 471 0.0097
(0.334) 		0.442
(1.00) 		1
(1.00) 		0.443
(1.00) 		0.0638
(0.643) 		0.92
(1.00) 		0.239
(0.883) 		0.722
(1.00) 		0.112
(0.734) 		0.374
(1)
ADAM10 8 (2%) 473 0.0905
(0.716) 		0.182
(0.826) 		0.345
(0.975) 		0.481
(1.00) 		0.319
(0.963) 		0.475
(1.00) 		0.226
(0.879) 		0.0755
(0.669) 		0.612
(1.00) 		0.451
(1.00)
MRPS35 6 (1%) 475 0.548
(1.00) 		0.168
(0.824) 		0.452
(1.00) 		0.636
(1.00) 		0.499
(1.00) 		0.797
(1.00) 		0.527
(1.00) 		1
(1.00)
ZNF608 9 (2%) 472 0.182
(0.826) 		0.639
(1.00) 		0.199
(0.842) 		0.00918
(0.331) 		0.504
(1.00) 		0.532
(1.00) 		0.563
(1.00) 		0.374
(1)
ARHGAP32 19 (4%) 462 0.827
(1.00) 		0.405
(1.00) 		0.125
(0.756) 		0.214
(0.857) 		0.321
(0.964) 		0.0652
(0.648) 		0.237
(0.883) 		0.0585
(0.624) 		0.148
(0.786) 		0.0629
(0.637)
NRAS 3 (1%) 478 0.0772
(0.673) 		0.115
(0.734) 		0.896
(1.00) 		0.305
(0.951) 		0.349
(0.979)
HCLS1 16 (3%) 465 0.375
(1) 		0.323
(0.964) 		0.896
(1.00) 		0.363
(0.996) 		0.77
(1.00) 		0.32
(0.964) 		0.797
(1.00) 		0.431
(1.00) 		0.661
(1.00) 		0.877
(1.00)
KIAA0895L 4 (1%) 477 0.0666
(0.648) 		0.556
(1.00) 		0.151
(0.792) 		0.0796
(0.675) 		0.146
(0.786) 		0.408
(1.00) 		0.151
(0.792) 		0.652
(1.00)
BMP2K 13 (3%) 468 0.536
(1.00) 		0.815
(1.00) 		0.452
(1.00) 		0.671
(1.00) 		0.0265
(0.504) 		0.0529
(0.624) 		0.101
(0.731) 		0.552
(1.00) 		0.278
(0.932) 		0.573
(1.00)
DOT1L 14 (3%) 467 0.655
(1.00) 		0.564
(1.00) 		0.427
(1.00) 		0.317
(0.962) 		0.789
(1.00) 		0.00664
(0.289) 		0.774
(1.00) 		0.0826
(0.683) 		0.585
(1.00) 		0.294
(0.948)
SND1 16 (3%) 465 0.0517
(0.624) 		0.0591
(0.624) 		0.284
(0.94) 		0.325
(0.966) 		0.0583
(0.624) 		0.023
(0.481) 		0.0336
(0.543) 		0.0889
(0.708) 		0.271
(0.932) 		0.0152
(0.394)
VGLL3 17 (4%) 464 0.571
(1.00) 		0.34
(0.974) 		0.614
(1.00) 		0.376
(1.00) 		0.474
(1.00) 		0.76
(1.00) 		0.225
(0.879) 		0.365
(0.998) 		0.148
(0.786) 		0.395
(1.00)
LUM 15 (3%) 466 0.106
(0.731) 		0.664
(1.00) 		0.541
(1.00) 		0.791
(1.00) 		0.571
(1.00) 		0.552
(1.00) 		0.721
(1.00) 		0.512
(1.00) 		0.642
(1.00) 		0.815
(1.00)
ATP1B4 9 (2%) 472 0.752
(1.00) 		0.0301
(0.533) 		0.575
(1.00) 		0.3
(0.951) 		0.918
(1.00) 		0.568
(1.00) 		0.503
(1.00) 		0.84
(1.00) 		0.552
(1.00) 		0.343
(0.974)
ATAD2 14 (3%) 467 0.0249
(0.497) 		0.0279
(0.522) 		0.553
(1.00) 		0.642
(1.00) 		0.0542
(0.624) 		0.275
(0.932) 		0.374
(1) 		0.0164
(0.402) 		0.763
(1.00) 		0.403
(1.00)
SLC17A9 8 (2%) 473 1
(1.00) 		0.821
(1.00) 		0.789
(1.00) 		0.512
(1.00) 		0.554
(1.00) 		0.927
(1.00) 		0.196
(0.842) 		0.608
(1.00) 		0.894
(1.00) 		1
(1.00)
ZNF592 16 (3%) 465 0.56
(1.00) 		0.227
(0.879) 		0.547
(1.00) 		0.511
(1.00) 		0.179
(0.826) 		0.135
(0.776) 		0.0981
(0.731) 		0.00619
(0.277) 		0.6
(1.00) 		0.612
(1.00)
ZNF556 12 (2%) 469 0.275
(0.932) 		0.6
(1.00) 		0.181
(0.826) 		0.553
(1.00) 		0.17
(0.824) 		0.185
(0.826) 		0.232
(0.88) 		0.582
(1.00) 		0.924
(1.00) 		0.0529
(0.624)
ZEB1 32 (7%) 449 0.638
(1.00) 		1
(1.00) 		0.658
(1.00) 		0.688
(1.00) 		0.501
(1.00) 		0.568
(1.00) 		0.463
(1.00) 		0.477
(1.00) 		0.503
(1.00) 		0.0426
(0.595) 		0.964
(1.00) 		0.666
(1.00)
SLC22A6 14 (3%) 467 0.639
(1.00) 		1
(1.00) 		0.835
(1.00) 		0.24
(0.885) 		0.454
(1.00) 		0.661
(1.00) 		0.186
(0.826) 		0.0674
(0.648) 		0.101
(0.731) 		0.621
(1.00) 		0.26
(0.916) 		0.901
(1.00)
RABEPK 6 (1%) 475 0.883
(1.00) 		0.781
(1.00) 		0.184
(0.826) 		0.517
(1.00) 		0.776
(1.00) 		0.465
(1.00) 		1
(1.00) 		0.942
(1.00) 		0.762
(1.00) 		0.397
(1.00)
CHGB 14 (3%) 467 0.677
(1.00) 		0.761
(1.00) 		0.831
(1.00) 		0.311
(0.954) 		0.0599
(0.624) 		0.109
(0.731) 		0.0441
(0.602) 		0.276
(0.932) 		0.573
(1.00) 		0.651
(1.00)
ESYT3 8 (2%) 473 0.843
(1.00) 		0.349
(0.979) 		0.403
(1.00) 		0.539
(1.00) 		0.466
(1.00) 		0.326
(0.967) 		0.251
(0.903) 		0.395
(1.00)
L1CAM 34 (7%) 447 0.849
(1.00) 		1
(1.00) 		0.299
(0.951) 		0.807
(1.00) 		0.402
(1.00) 		0.514
(1.00) 		0.626
(1.00) 		0.729
(1.00) 		0.52
(1.00) 		0.446
(1.00) 		0.118
(0.734) 		0.877
(1.00)
SLC17A3 15 (3%) 466 0.258
(0.914) 		0.175
(0.826) 		0.197
(0.842) 		0.24
(0.886) 		0.00979
(0.335) 		0.113
(0.734) 		0.252
(0.903) 		0.00877
(0.331) 		0.17
(0.824) 		0.0367
(0.566)
ITIH2 19 (4%) 462 0.146
(0.784) 		1
(1.00) 		0.0585
(0.624) 		0.171
(0.826) 		1
(1.00) 		0.859
(1.00) 		0.611
(1.00) 		0.441
(1.00) 		0.338
(0.974) 		0.41
(1.00) 		0.676
(1.00) 		0.00628
(0.277)
HP1BP3 9 (2%) 472 0.189
(0.833) 		1
(1.00) 		0.453
(1.00) 		1
(1.00) 		0.0441
(0.602) 		0.0222
(0.474) 		0.0118
(0.358) 		0.0286
(0.529) 		0.104
(0.731) 		0.142
(0.78)
TMCO2 6 (1%) 475 0.325
(0.966) 		0.294
(0.948) 		0.776
(1.00) 		0.311
(0.955) 		0.583
(1.00) 		0.719
(1.00) 		0.103
(0.731) 		0.142
(0.78)
N4BP1 9 (2%) 472 0.398
(1.00) 		0.403
(1.00) 		0.119
(0.734) 		0.582
(1.00) 		0.41
(1.00) 		0.0407
(0.584) 		0.906
(1.00) 		0.702
(1.00)
MMP13 13 (3%) 468 0.0704
(0.653) 		0.741
(1.00) 		0.676
(1.00) 		0.179
(0.826) 		0.145
(0.784) 		0.0599
(0.624) 		0.277
(0.932) 		0.233
(0.883) 		0.555
(1.00) 		0.0805
(0.676)
ZACN 8 (2%) 473 0.749
(1.00) 		0.82
(1.00) 		0.821
(1.00) 		0.621
(1.00) 		0.466
(1.00) 		0.235
(0.883) 		0.0303
(0.533) 		0.299
(0.951)
SFTPB 6 (1%) 475 0.0373
(0.572) 		0.231
(0.879) 		0.263
(0.922) 		0.375
(1) 		0.204
(0.844) 		0.648
(1.00) 		0.234
(0.883) 		0.83
(1.00)
SRRM3 5 (1%) 476 0.445
(1.00) 		0.633
(1.00) 		1
(1.00) 		0.463
(1.00) 		0.848
(1.00) 		0.496
(1.00) 		0.0292
(0.529) 		0.652
(1.00)
FAM71A 16 (3%) 465 0.93
(1.00) 		0.885
(1.00) 		0.442
(1.00) 		0.208
(0.851) 		0.0573
(0.624) 		0.00793
(0.317) 		0.129
(0.763) 		0.131
(0.77) 		0.119
(0.734) 		0.0385
(0.577)
MCM9 3 (1%) 478 1
(1.00) 		0.636
(1.00) 		0.765
(1.00) 		1
(1.00) 		0.484
(1.00)
GRAP2 11 (2%) 470 0.427
(1.00) 		0.343
(0.974) 		0.791
(1.00) 		0.552
(1.00) 		0.0306
(0.535) 		0.675
(1.00) 		1
(1.00) 		0.428
(1.00) 		0.858
(1.00) 		0.339
(0.974)
ARHGAP4 14 (3%) 467 0.582
(1.00) 		0.387
(1.00) 		0.125
(0.756) 		0.458
(1.00) 		0.892
(1.00) 		0.322
(0.964) 		0.823
(1.00) 		0.284
(0.939) 		1
(1.00) 		0.372
(1)
IFI35 3 (1%) 478 0.364
(0.996) 		0.645
(1.00) 		0.115
(0.734) 		0.288
(0.942) 		0.599
(1.00) 		0.751
(1.00) 		0.316
(0.961) 		0.581
(1.00)
TMEM202 6 (1%) 475 1
(1.00) 		0.523
(1.00) 		0.777
(1.00) 		0.603
(1.00) 		0.752
(1.00) 		0.281
(0.937) 		0.866
(1.00) 		1
(1.00)
GTF2A1 3 (1%) 478 0.731
(1.00) 		1
(1.00) 		0.39
(1.00) 		0.213
(0.855) 		1
(1.00) 		0.415
(1.00) 		0.601
(1.00) 		1
(1.00)
SERPINB13 10 (2%) 471 0.209
(0.852) 		0.598
(1.00) 		0.734
(1.00) 		0.315
(0.961) 		0.238
(0.883) 		0.357
(0.99) 		0.194
(0.842) 		0.289
(0.943) 		0.0537
(0.624) 		0.4
(1.00)
RAMP2 3 (1%) 478 0.533
(1.00) 		0.781
(1.00) 		0.324
(0.965) 		1
(1.00) 		0.352
(0.983)
RNASEH1 6 (1%) 475 0.613
(1.00) 		0.225
(0.879) 		0.776
(1.00) 		0.592
(1.00) 		0.116
(0.734) 		0.114
(0.734) 		0.765
(1.00) 		0.471
(1.00)
GLTSCR1 8 (2%) 473 0.136
(0.776) 		0.117
(0.734) 		0.831
(1.00) 		0.644
(1.00) 		0.554
(1.00) 		0.844
(1.00) 		0.332
(0.974) 		0.118
(0.734) 		0.303
(0.951) 		0.798
(1.00)
PDE1A 15 (3%) 466 0.961
(1.00) 		0.209
(0.852) 		0.899
(1.00) 		0.367
(1) 		0.308
(0.952) 		0.456
(1.00) 		0.546
(1.00) 		0.413
(1.00) 		0.447
(1.00) 		0.572
(1.00)
RAF1 6 (1%) 475 1
(1.00) 		1
(1.00) 		0.777
(1.00) 		0.553
(1.00) 		1
(1.00) 		0.214
(0.857) 		0.0437
(0.602) 		0.0243
(0.496)
PLXND1 15 (3%) 466 0.864
(1.00) 		0.944
(1.00) 		0.68
(1.00) 		0.496
(1.00) 		0.718
(1.00) 		0.429
(1.00) 		0.376
(1.00) 		0.234
(0.883) 		1
(1.00) 		0.406
(1.00)
OFD1 15 (3%) 466 0.0682
(0.648) 		0.439
(1.00) 		1
(1.00) 		0.62
(1.00) 		0.307
(0.952) 		0.268
(0.932) 		0.0656
(0.648) 		0.0165
(0.402) 		0.188
(0.833) 		0.119
(0.734)
APLF 4 (1%) 477 0.212
(0.854) 		1
(1.00) 		0.251
(0.903) 		0.125
(0.756) 		0.538
(1.00) 		0.688
(1.00) 		0.434
(1.00) 		0.301
(0.951)
CAPN11 12 (2%) 469 0.201
(0.842) 		0.359
(0.993) 		0.487
(1.00) 		0.916
(1.00) 		0.453
(1.00) 		0.935
(1.00) 		0.0103
(0.338) 		0.0158
(0.398) 		0.142
(0.78) 		0.0587
(0.624) 		0.58
(1.00) 		0.231
(0.879)
FLCN 10 (2%) 471 0.627
(1.00) 		0.444
(1.00) 		0.119
(0.734) 		0.477
(1.00) 		0.614
(1.00) 		0.909
(1.00) 		0.766
(1.00) 		0.71
(1.00) 		0.287
(0.942) 		1
(1.00)
C2ORF53 13 (3%) 468 0.056
(0.624) 		0.537
(1.00) 		0.615
(1.00) 		0.38
(1.00) 		0.357
(0.99) 		0.238
(0.883) 		0.276
(0.932) 		0.0173
(0.414) 		0.84
(1.00) 		0.225
(0.879)
STK19 5 (1%) 476 0.672
(1.00) 		1
(1.00) 		0.39
(1.00) 		0.975
(1.00) 		0.848
(1.00) 		0.654
(1.00) 		0.0559
(0.624) 		0.827
(1.00)
PKD2 15 (3%) 466 0.79
(1.00) 		0.107
(0.731) 		0.453
(1.00) 		0.753
(1.00) 		0.543
(1.00) 		0.256
(0.91) 		0.613
(1.00) 		0.749
(1.00) 		0.833
(1.00) 		0.815
(1.00)
NOTCH4 43 (9%) 438 0.147
(0.786) 		1
(1.00) 		0.0729
(0.655) 		0.0563
(0.624) 		0.0928
(0.72) 		0.655
(1.00) 		0.116
(0.734) 		0.373
(1) 		0.0324
(0.541) 		0.00621
(0.277) 		0.204
(0.843) 		0.113
(0.734)
SOS2 13 (3%) 468 0.423
(1.00) 		0.514
(1.00) 		0.369
(1) 		0.41
(1.00) 		0.0678
(0.648) 		0.483
(1.00) 		0.143
(0.781) 		0.211
(0.853) 		1
(1.00) 		0.337
(0.974)
SETDB1 10 (2%) 471 0.0908
(0.716) 		0.326
(0.966) 		0.0908
(0.716) 		0.407
(1.00) 		0.744
(1.00) 		0.503
(1.00) 		0.579
(1.00) 		0.795
(1.00)
ANTXR1 19 (4%) 462 0.775
(1.00) 		0.643
(1.00) 		0.634
(1.00) 		0.186
(0.826) 		0.699
(1.00) 		0.718
(1.00) 		0.487
(1.00) 		0.735
(1.00) 		0.718
(1.00) 		0.446
(1.00)
SLC38A8 9 (2%) 472 0.373
(1) 		0.0812
(0.678) 		0.0548
(0.624) 		0.553
(1.00) 		0.0739
(0.66) 		0.106
(0.731) 		0.672
(1.00) 		0.597
(1.00) 		0.523
(1.00) 		0.343
(0.974)
RBBP6 17 (4%) 464 0.37
(1) 		0.388
(1.00) 		0.156
(0.8) 		0.6
(1.00) 		0.132
(0.772) 		0.218
(0.869) 		0.282
(0.938) 		0.114
(0.734) 		0.484
(1.00) 		0.261
(0.918)
RFX1 9 (2%) 472 0.586
(1.00) 		0.36
(0.993) 		0.74
(1.00) 		0.875
(1.00) 		0.025
(0.497) 		0.0441
(0.602) 		0.583
(1.00) 		0.47
(1.00)
PRB2 13 (3%) 468 0.526
(1.00) 		1
(1.00) 		0.814
(1.00) 		0.127
(0.759) 		0.706
(1.00) 		0.57
(1.00) 		0.477
(1.00) 		0.292
(0.948)
COL25A1 32 (7%) 449 0.509
(1.00) 		1
(1.00) 		0.0528
(0.624) 		0.943
(1.00) 		0.565
(1.00) 		0.523
(1.00) 		0.36
(0.993) 		0.0903
(0.716) 		0.404
(1.00) 		0.101
(0.731) 		0.843
(1.00) 		0.0993
(0.731)
PPP2R5B 7 (1%) 474 0.945
(1.00) 		0.52
(1.00) 		0.83
(1.00) 		0.62
(1.00) 		1
(1.00) 		0.308
(0.952) 		1
(1.00) 		0.333
(0.974) 		0.277
(0.932) 		0.182
(0.826)
DZIP1L 11 (2%) 470 0.355
(0.988) 		0.743
(1.00) 		0.789
(1.00) 		0.381
(1.00) 		0.218
(0.867) 		0.518
(1.00) 		0.0475
(0.617) 		0.0626
(0.635) 		0.268
(0.932) 		0.115
(0.734)
RLTPR 15 (3%) 466 0.49
(1.00) 		0.944
(1.00) 		0.287
(0.942) 		0.0996
(0.731) 		0.343
(0.974) 		0.00616
(0.277) 		0.236
(0.883) 		0.137
(0.776) 		1
(1.00) 		0.408
(1.00)
CD40LG 6 (1%) 475 0.647
(1.00) 		0.741
(1.00) 		1
(1.00) 		1
(1.00) 		0.293
(0.948) 		0.925
(1.00) 		0.669
(1.00) 		0.836
(1.00) 		0.685
(1.00) 		0.303
(0.951)
LGALS2 5 (1%) 476 0.931
(1.00) 		1
(1.00) 		0.867
(1.00) 		0.854
(1.00) 		0.85
(1.00) 		0.433
(1.00) 		0.799
(1.00) 		0.781
(1.00)
PADI2 10 (2%) 471 0.0892
(0.709) 		0.206
(0.849) 		0.36
(0.993) 		0.574
(1.00) 		0.345
(0.975) 		0.56
(1.00) 		0.843
(1.00) 		0.342
(0.974) 		1
(1.00) 		0.702
(1.00)
C1ORF116 11 (2%) 470 0.774
(1.00) 		0.262
(0.92) 		0.541
(1.00) 		0.109
(0.731) 		0.515
(1.00) 		0.935
(1.00) 		0.185
(0.826) 		0.74
(1.00) 		0.906
(1.00) 		1
(1.00)
NBPF3 6 (1%) 475 0.375
(1) 		1
(1.00) 		0.0991
(0.731) 		0.0218
(0.472) 		0.499
(1.00) 		0.886
(1.00) 		0.0548
(0.624) 		0.828
(1.00)
RNMT 8 (2%) 473 0.0493
(0.62) 		0.227
(0.879) 		1
(1.00) 		0.335
(0.974) 		0.551
(1.00) 		0.792
(1.00) 		0.418
(1.00) 		0.168
(0.824) 		1
(1.00) 		0.174
(0.826)
PXK 7 (1%) 474 0.336
(0.974) 		0.387
(1.00) 		0.272
(0.932) 		0.956
(1.00) 		0.202
(0.842) 		0.122
(0.749) 		0.0786
(0.673) 		0.301
(0.951)
ZNF223 10 (2%) 471 0.151
(0.792) 		0.017
(0.411) 		0.287
(0.942) 		0.211
(0.853) 		0.317
(0.962) 		0.288
(0.942) 		0.0761
(0.671) 		0.0314
(0.537) 		0.223
(0.879) 		0.25
(0.903)
ASXL2 18 (4%) 463 0.549
(1.00) 		0.509
(1.00) 		0.846
(1.00) 		0.515
(1.00) 		0.408
(1.00) 		0.716
(1.00) 		0.373
(1) 		0.421
(1.00) 		0.146
(0.785) 		0.782
(1.00)
CPA4 14 (3%) 467 0.575
(1.00) 		0.331
(0.974) 		0.791
(1.00) 		0.88
(1.00) 		0.186
(0.826) 		0.123
(0.752) 		0.0353
(0.556) 		0.216
(0.864) 		0.762
(1.00) 		0.111
(0.731)
SNX9 7 (1%) 474 0.944
(1.00) 		0.293
(0.948) 		0.308
(0.952) 		0.511
(1.00) 		0.867
(1.00) 		0.255
(0.91) 		0.314
(0.96) 		1
(1.00)
BAP1 8 (2%) 473 0.291
(0.947) 		0.333
(0.974) 		1
(1.00) 		0.633
(1.00) 		0.667
(1.00) 		0.23
(0.879) 		0.474
(1.00) 		0.541
(1.00) 		0.0559
(0.624) 		0.501
(1.00)
PCSK4 8 (2%) 473 0.124
(0.754) 		0.572
(1.00) 		0.824
(1.00) 		0.975
(1.00) 		0.224
(0.879) 		0.423
(1.00) 		0.434
(1.00) 		0.4
(1.00)
FOLH1 28 (6%) 453 0.481
(1.00) 		0.378
(1.00) 		0.306
(0.951) 		0.0671
(0.648) 		0.039
(0.58) 		0.194
(0.842) 		0.16
(0.808) 		0.0207
(0.459) 		0.0994
(0.731) 		0.802
(1.00)
ERLIN2 6 (1%) 475 0.882
(1.00) 		0.284
(0.94) 		0.198
(0.842) 		0.307
(0.952) 		0.581
(1.00) 		0.335
(0.974) 		0.193
(0.842) 		0.236
(0.883)
SBSN 12 (2%) 469 0.485
(1.00) 		0.319
(0.964) 		0.79
(1.00) 		0.551
(1.00) 		0.323
(0.964) 		0.57
(1.00) 		0.023
(0.481) 		0.0325
(0.541) 		0.0941
(0.72) 		0.833
(1.00)
NID2 33 (7%) 448 0.0682
(0.648) 		0.00884
(0.331) 		0.0825
(0.683) 		0.0643
(0.644) 		0.323
(0.964) 		0.464
(1.00) 		0.0263
(0.504) 		0.0347
(0.551) 		0.15
(0.792) 		0.21
(0.852)
SAMD7 11 (2%) 470 0.941
(1.00) 		0.315
(0.96) 		0.83
(1.00) 		0.369
(1) 		0.516
(1.00) 		0.676
(1.00) 		0.519
(1.00) 		0.301
(0.951) 		0.834
(1.00) 		0.812
(1.00)
SERPINB5 9 (2%) 472 0.374
(1) 		0.837
(1.00) 		0.453
(1.00) 		0.0546
(0.624) 		0.443
(1.00) 		0.227
(0.879) 		0.671
(1.00) 		0.898
(1.00) 		1
(1.00) 		0.812
(1.00)
SLC39A6 14 (3%) 467 0.271
(0.932) 		0.0475
(0.617) 		0.829
(1.00) 		0.617
(1.00) 		0.32
(0.964) 		0.306
(0.951) 		0.0713
(0.653) 		0.0474
(0.617) 		0.06
(0.624) 		0.131
(0.77)
KRT26 9 (2%) 472 0.459
(1.00) 		0.202
(0.842) 		0.697
(1.00) 		0.64
(1.00) 		0.244
(0.894) 		0.186
(0.826) 		0.583
(1.00) 		0.0454
(0.611)
CALCRL 13 (3%) 468 0.0472
(0.617) 		0.103
(0.731) 		0.681
(1.00) 		0.511
(1.00) 		0.0413
(0.584) 		0.199
(0.842) 		0.694
(1.00) 		0.0335
(0.543)
STRN3 10 (2%) 471 1
(1.00) 		0.79
(1.00) 		0.173
(0.826) 		0.814
(1.00) 		0.136
(0.776) 		0.531
(1.00) 		0.31
(0.953) 		0.748
(1.00) 		0.288
(0.942) 		1
(1.00)
RPS16 3 (1%) 478 0.229
(0.879) 		0.778
(1.00) 		0.114
(0.734) 		0.837
(1.00) 		1
(1.00) 		0.568
(1.00) 		0.601
(1.00) 		0.781
(1.00)
NPR1 14 (3%) 467 0.248
(0.903) 		0.403
(1.00) 		0.764
(1.00) 		0.269
(0.932) 		0.175
(0.826) 		0.619
(1.00) 		0.0852
(0.687) 		0.138
(0.777) 		0.696
(1.00) 		0.0341
(0.547)
KARS 7 (1%) 474 0.2
(0.842) 		0.144
(0.784) 		0.507
(1.00) 		0.251
(0.903) 		0.0696
(0.652) 		0.119
(0.735) 		0.895
(1.00) 		0.0926
(0.72)
FRMD6 14 (3%) 467 0.556
(1.00) 		0.353
(0.985) 		0.539
(1.00) 		0.584
(1.00) 		0.175
(0.826) 		0.161
(0.811) 		0.201
(0.842) 		0.183
(0.826) 		0.563
(1.00) 		0.108
(0.731)
TMC4 10 (2%) 471 0.752
(1.00) 		0.345
(0.975) 		0.238
(0.883) 		0.537
(1.00) 		0.0667
(0.648) 		0.511
(1.00) 		0.206
(0.848) 		0.275
(0.932)
ARMC3 22 (5%) 459 0.141
(0.78) 		1
(1.00) 		0.341
(0.974) 		0.753
(1.00) 		0.855
(1.00) 		0.476
(1.00) 		0.179
(0.826) 		0.573
(1.00) 		0.66
(1.00) 		0.435
(1.00)
PIK3R4 20 (4%) 461 0.0327
(0.543) 		0.197
(0.842) 		0.767
(1.00) 		0.634
(1.00) 		0.127
(0.759) 		0.308
(0.952) 		0.00628
(0.277) 		0.305
(0.951) 		0.561
(1.00) 		0.324
(0.965)
ESRP1 8 (2%) 473 0.148
(0.786) 		0.449
(1.00) 		1
(1.00) 		0.446
(1.00) 		0.0603
(0.624) 		0.0859
(0.69) 		0.0589
(0.624) 		0.381
(1.00) 		0.236
(0.883) 		0.0457
(0.611)
GRN 6 (1%) 475 0.182
(0.826) 		0.387
(1.00) 		0.453
(1.00) 		0.894
(1.00) 		0.501
(1.00) 		0.0784
(0.673) 		0.503
(1.00) 		0.854
(1.00)
CYTH4 5 (1%) 476 0.381
(1.00) 		0.74
(1.00) 		0.1
(0.731) 		0.245
(0.894) 		0.51
(1.00) 		0.803
(1.00) 		0.16
(0.808) 		0.403
(1.00)
SEC23IP 9 (2%) 472 0.289
(0.942) 		0.0782
(0.673) 		0.359
(0.993) 		0.565
(1.00) 		0.192
(0.84) 		0.592
(1.00) 		0.905
(1.00) 		0.894
(1.00)
LARP4 9 (2%) 472 0.112
(0.734) 		0.204
(0.843) 		0.615
(1.00) 		0.445
(1.00) 		0.107
(0.731) 		0.405
(1.00) 		0.169
(0.824) 		0.0843
(0.684) 		0.0354
(0.556) 		0.399
(1.00)
SLAMF8 9 (2%) 472 0.606
(1.00) 		0.202
(0.842) 		0.246
(0.899) 		0.413
(1.00) 		0.911
(1.00) 		0.388
(1.00) 		0.652
(1.00) 		0.436
(1.00)
IGDCC4 24 (5%) 457 0.0336
(0.543) 		0.225
(0.879) 		0.896
(1.00) 		0.548
(1.00) 		0.251
(0.903) 		0.344
(0.975) 		0.143
(0.781) 		0.0666
(0.648) 		0.547
(1.00) 		0.23
(0.879)
NPBWR2 8 (2%) 473 0.191
(0.838) 		0.286
(0.941) 		0.185
(0.826) 		0.0812
(0.678) 		0.336
(0.974) 		0.176
(0.826) 		0.238
(0.883) 		0.233
(0.882)
FLRT3 8 (2%) 473 0.95
(1.00) 		1
(1.00) 		0.125
(0.756) 		0.0599
(0.624) 		0.909
(1.00) 		0.861
(1.00) 		0.645
(1.00) 		0.599
(1.00) 		0.295
(0.949) 		0.176
(0.826)
MYO1G 12 (2%) 469 0.015
(0.39) 		0.693
(1.00) 		1
(1.00) 		1
(1.00) 		0.0969
(0.728) 		0.397
(1.00) 		0.229
(0.879) 		0.677
(1.00) 		0.373
(1) 		0.456
(1.00)
PUM2 12 (2%) 469 0.19
(0.835) 		0.466
(1.00) 		0.442
(1.00) 		0.972
(1.00) 		0.17
(0.824) 		0.942
(1.00) 		0.748
(1.00) 		0.641
(1.00) 		0.533
(1.00) 		1
(1.00)
C11ORF63 18 (4%) 463 0.451
(1.00) 		0.242
(0.89) 		0.613
(1.00) 		0.377
(1.00) 		0.306
(0.951) 		0.218
(0.867) 		0.00893
(0.331) 		0.0312
(0.537) 		0.76
(1.00) 		0.152
(0.792)
IPP 5 (1%) 476 0.0861
(0.69) 		0.116
(0.734) 		0.739
(1.00) 		0.824
(1.00) 		0.347
(0.979) 		0.172
(0.826) 		0.825
(1.00) 		0.652
(1.00)
XRCC6 8 (2%) 473 0.312
(0.956) 		0.572
(1.00) 		1
(1.00) 		0.0712
(0.653) 		0.553
(1.00) 		0.104
(0.731) 		0.778
(1.00) 		0.666
(1.00) 		0.163
(0.814) 		0.551
(1.00)
RHEB 4 (1%) 477 0.119
(0.734) 		0.322
(0.964) 		0.711
(1.00) 		0.539
(1.00) 		0.623
(1.00)
TSLP 7 (1%) 474 0.388
(1.00) 		0.684
(1.00) 		0.458
(1.00) 		1
(1.00) 		0.277
(0.932) 		0.469
(1.00) 		0.101
(0.731) 		0.181
(0.826) 		0.585
(1.00) 		0.471
(1.00)
LIPG 9 (2%) 472 0.447
(1.00) 		0.608
(1.00) 		1
(1.00) 		0.18
(0.826) 		0.918
(1.00) 		0.612
(1.00) 		0.134
(0.772) 		0.423
(1.00) 		0.237
(0.883) 		0.229
(0.879)
SOS1 14 (3%) 467 0.847
(1.00) 		0.392
(1.00) 		0.482
(1.00) 		0.728
(1.00) 		0.244
(0.894) 		0.42
(1.00) 		0.0889
(0.708) 		0.288
(0.942) 		0.523
(1.00) 		0.762
(1.00) 		0.674
(1.00) 		0.769
(1.00)
KCTD1 6 (1%) 475 0.729
(1.00) 		0.739
(1.00) 		0.879
(1.00) 		0.676
(1.00) 		0.751
(1.00) 		1
(1.00) 		0.851
(1.00) 		1
(1.00)
IRF2BP2 7 (1%) 474 0.645
(1.00) 		0.145
(0.784) 		0.8
(1.00) 		0.97
(1.00) 		0.421
(1.00) 		0.761
(1.00) 		1
(1.00) 		0.398
(1.00)
SUN1 15 (3%) 466 0.279
(0.932) 		1
(1.00) 		0.829
(1.00) 		0.212
(0.853) 		0.105
(0.731) 		0.152
(0.792) 		0.0168
(0.409) 		0.0202
(0.451) 		0.572
(1.00) 		0.132
(0.772)
SEMA6C 7 (1%) 474 0.22
(0.873) 		0.876
(1.00) 		1
(1.00) 		0.955
(1.00) 		0.033
(0.543) 		0.58
(1.00) 		0.422
(1.00) 		0.378
(1.00) 		0.85
(1.00) 		0.237
(0.883)
KLF5 4 (1%) 477 1
(1.00) 		0.393
(1.00) 		0.118
(0.734) 		0.105
(0.731) 		1
(1.00) 		0.788
(1.00) 		0.836
(1.00) 		0.505
(1.00) 		0.114
(0.734) 		0.146
(0.784)
RFTN2 11 (2%) 470 0.448
(1.00) 		0.561
(1.00) 		0.252
(0.903) 		0.223
(0.879) 		0.432
(1.00) 		0.169
(0.824) 		0.185
(0.826) 		0.0374
(0.572) 		0.554
(1.00) 		0.0795
(0.675)
ZNF81 8 (2%) 473 0.288
(0.942) 		0.715
(1.00) 		1
(1.00) 		0.639
(1.00) 		0.407
(1.00) 		0.542
(1.00) 		0.227
(0.879) 		0.175
(0.826) 		1
(1.00) 		0.883
(1.00)
NPHS1 24 (5%) 457 0.0688
(0.65) 		0.18
(0.826) 		0.0501
(0.624) 		0.241
(0.887) 		0.283
(0.939) 		0.695
(1.00) 		0.546
(1.00) 		0.173
(0.826) 		1
(1.00) 		0.282
(0.937)
FIBP 5 (1%) 476 0.0293
(0.529) 		0.197
(0.842) 		0.0132
(0.371) 		0.0156
(0.397) 		0.334
(0.974) 		0.435
(1.00) 		0.727
(1.00) 		0.93
(1.00) 		0.826
(1.00) 		0.818
(1.00)
MSH2 11 (2%) 470 0.737
(1.00) 		1
(1.00) 		0.323
(0.964) 		0.531
(1.00) 		0.532
(1.00) 		0.434
(1.00) 		0.657
(1.00) 		1
(1.00)
PARD3B 27 (6%) 454 0.836
(1.00) 		0.348
(0.979) 		0.927
(1.00) 		0.682
(1.00) 		0.3
(0.951) 		0.32
(0.964) 		0.567
(1.00) 		0.947
(1.00) 		0.958
(1.00) 		0.0141
(0.373)
LCE2B 8 (2%) 473 0.0128
(0.371) 		0.183
(0.826) 		0.104
(0.731) 		0.325
(0.966) 		0.226
(0.879) 		0.175
(0.826) 		0.333
(0.974) 		0.398
(1.00)
NTHL1 6 (1%) 475 0.0621
(0.633) 		0.519
(1.00) 		0.595
(1.00) 		0.665
(1.00) 		0.577
(1.00) 		0.299
(0.951) 		0.0264
(0.504) 		0.548
(1.00)
UBAP2 11 (2%) 470 0.308
(0.952) 		0.443
(1.00) 		1
(1.00) 		0.812
(1.00) 		0.931
(1.00) 		0.985
(1.00) 		0.516
(1.00) 		0.154
(0.798) 		0.906
(1.00) 		0.436
(1.00)
MATR3 7 (1%) 474 0.371
(1) 		0.294
(0.948) 		0.109
(0.731) 		0.342
(0.974) 		0.475
(1.00) 		0.445
(1.00) 		0.193
(0.842) 		0.47
(1.00)
CD34 10 (2%) 471 0.964
(1.00) 		0.274
(0.932) 		0.164
(0.816) 		0.41
(1.00) 		0.154
(0.798) 		0.0458
(0.611) 		0.691
(1.00) 		0.11
(0.731)
BRD9 5 (1%) 476 0.518
(1.00) 		0.739
(1.00) 		0.237
(0.883) 		0.66
(1.00) 		0.726
(1.00) 		0.296
(0.95) 		0.724
(1.00) 		0.828
(1.00)
RGS20 7 (1%) 474 0.34
(0.974) 		0.226
(0.879) 		0.182
(0.826) 		0.816
(1.00) 		0.0682
(0.648) 		0.12
(0.735) 		0.43
(1.00) 		0.63
(1.00)
ITLN1 9 (2%) 472 0.0487
(0.619) 		0.145
(0.784) 		0.2
(0.842) 		0.112
(0.734) 		0.239
(0.883) 		0.276
(0.932) 		1
(1.00) 		1
(1.00)
FIGNL1 11 (2%) 470 0.751
(1.00) 		0.154
(0.798) 		0.455
(1.00) 		0.278
(0.932) 		0.865
(1.00) 		0.905
(1.00) 		1
(1.00) 		0.113
(0.734) 		0.731
(1.00) 		0.543
(1.00)
ABCF3 8 (2%) 473 0.614
(1.00) 		0.323
(0.964) 		0.551
(1.00) 		0.974
(1.00) 		0.725
(1.00) 		0.16
(0.808) 		0.582
(1.00) 		0.2
(0.842)
KSR1 12 (2%) 469 0.653
(1.00) 		0.597
(1.00) 		0.0569
(0.624) 		0.773
(1.00) 		0.16
(0.808) 		0.268
(0.932) 		0.602
(1.00) 		0.448
(1.00) 		0.671
(1.00) 		0.544
(1.00)
ARAP3 17 (4%) 464 0.602
(1.00) 		0.665
(1.00) 		0.119
(0.734) 		0.139
(0.779) 		0.126
(0.759) 		0.494
(1.00) 		0.894
(1.00) 		0.212
(0.853) 		0.644
(1.00) 		0.169
(0.824)
IPO9 9 (2%) 472 0.102
(0.731) 		0.609
(1.00) 		0.46
(1.00) 		0.554
(1.00) 		0.102
(0.731) 		0.0835
(0.684) 		0.503
(1.00) 		0.176
(0.826) 		0.489
(1.00) 		0.399
(1.00)
SLC26A4 11 (2%) 470 0.199
(0.842) 		0.0483
(0.619) 		0.369
(1) 		0.378
(1.00) 		0.258
(0.914) 		0.728
(1.00) 		0.0676
(0.648) 		0.139
(0.779) 		0.841
(1.00) 		0.456
(1.00)
MOCOS 9 (2%) 472 0.858
(1.00) 		0.552
(1.00) 		0.294
(0.948) 		0.662
(1.00) 		0.25
(0.903) 		0.329
(0.972) 		1
(1.00) 		0.578
(1.00) 		0.583
(1.00) 		0.0707
(0.653)
MOGAT2 8 (2%) 473 0.569
(1.00) 		0.893
(1.00) 		0.172
(0.826) 		0.714
(1.00) 		0.554
(1.00) 		0.349
(0.979) 		0.334
(0.974) 		0.304
(0.951) 		0.791
(1.00) 		0.0939
(0.72)
ZKSCAN5 7 (1%) 474 0.0991
(0.731) 		1
(1.00) 		0.184
(0.826) 		0.378
(1.00) 		0.0264
(0.504) 		0.357
(0.99) 		0.0677
(0.648) 		0.0844
(0.684) 		0.083
(0.683) 		0.144
(0.784)
GPR150 3 (1%) 478 0.73
(1.00) 		0.112
(0.734) 		0.114
(0.734) 		0.289
(0.942) 		0.0919
(0.718) 		0.483
(1.00) 		0.0097
(0.334) 		0.58
(1.00)
MGAT5B 19 (4%) 462 0.531
(1.00) 		0.114
(0.734) 		0.362
(0.994) 		0.338
(0.974) 		0.0229
(0.481) 		0.339
(0.974) 		0.503
(1.00) 		0.0781
(0.673) 		0.174
(0.826) 		0.594
(1.00)
AGXT 8 (2%) 473 0.0488
(0.619) 		0.61
(1.00) 		0.361
(0.993) 		0.0406
(0.584) 		0.724
(1.00) 		0.473
(1.00) 		0.0443
(0.602) 		0.2
(0.842)
PBRM1 8 (2%) 473 0.695
(1.00) 		0.229
(0.879) 		0.459
(1.00) 		1
(1.00) 		0.36
(0.993) 		0.518
(1.00) 		0.725
(1.00) 		0.108
(0.731) 		0.868
(1.00) 		0.735
(1.00)
CREB5 13 (3%) 468 0.535
(1.00) 		0.645
(1.00) 		0.36
(0.993) 		0.619
(1.00) 		0.286
(0.941) 		0.681
(1.00) 		0.466
(1.00) 		0.917
(1.00) 		0.859
(1.00) 		0.545
(1.00)
CD300E 7 (1%) 474 0.199
(0.842) 		0.129
(0.763) 		0.505
(1.00) 		0.915
(1.00) 		0.0813
(0.678) 		0.498
(1.00) 		1
(1.00) 		0.882
(1.00)
ZNF623 9 (2%) 472 0.803
(1.00) 		0.683
(1.00) 		0.294
(0.948) 		0.543
(1.00) 		0.11
(0.731) 		0.433
(1.00) 		0.134
(0.772) 		0.663
(1.00) 		0.277
(0.932) 		1
(1.00)
CYSLTR2 9 (2%) 472 0.605
(1.00) 		0.666
(1.00) 		0.822
(1.00) 		0.362
(0.994) 		0.333
(0.974) 		0.0133
(0.371) 		0.0357
(0.558) 		0.341
(0.974)
BCL9L 17 (4%) 464 0.936
(1.00) 		0.0954
(0.725) 		0.303
(0.951) 		0.354
(0.987) 		0.197
(0.842) 		0.229
(0.879) 		0.496
(1.00) 		0.561
(1.00) 		0.463
(1.00) 		0.423
(1.00)
ZFP36L1 11 (2%) 470 0.614
(1.00) 		0.289
(0.942) 		0.248
(0.903) 		0.751
(1.00) 		0.799
(1.00) 		0.788
(1.00) 		0.921
(1.00) 		0.856
(1.00) 		0.314
(0.96) 		0.499
(1.00)
PALM 6 (1%) 475 0.328
(0.97) 		0.386
(1.00) 		0.196
(0.842) 		0.148
(0.786) 		0.205
(0.844) 		0.155
(0.798) 		0.235
(0.883) 		0.237
(0.883)
CSNK1A1L 13 (3%) 468 0.328
(0.97) 		0.402
(1.00) 		1
(1.00) 		0.443
(1.00) 		0.684
(1.00) 		0.967
(1.00) 		0.4
(1.00) 		0.68
(1.00) 		0.932
(1.00) 		0.256
(0.91)
SCML4 11 (2%) 470 0.155
(0.798) 		0.789
(1.00) 		1
(1.00) 		0.808
(1.00) 		0.93
(1.00) 		0.622
(1.00) 		1
(1.00) 		0.582
(1.00) 		0.604
(1.00) 		0.62
(1.00)
SLC11A1 7 (1%) 474 0.391
(1.00) 		0.31
(0.954) 		0.542
(1.00) 		1
(1.00) 		0.575
(1.00) 		0.586
(1.00) 		0.32
(0.964) 		0.948
(1.00) 		0.119
(0.734) 		0.885
(1.00)
MOGAT3 10 (2%) 471 0.278
(0.932) 		0.371
(1) 		0.084
(0.684) 		0.251
(0.903) 		0.164
(0.816) 		0.175
(0.826) 		0.0664
(0.648) 		0.277
(0.932) 		0.692
(1.00) 		0.591
(1.00)
TULP4 13 (3%) 468 0.802
(1.00) 		0.759
(1.00) 		0.629
(1.00) 		0.137
(0.776) 		0.684
(1.00) 		0.522
(1.00) 		0.401
(1.00) 		0.0709
(0.653) 		1
(1.00) 		0.409
(1.00)
ASB5 14 (3%) 467 0.216
(0.862) 		0.437
(1.00) 		0.631
(1.00) 		0.581
(1.00) 		0.285
(0.94) 		0.44
(1.00) 		0.198
(0.842) 		0.704
(1.00) 		0.562
(1.00) 		0.666
(1.00)
TDRD6 17 (4%) 464 0.82
(1.00) 		0.456
(1.00) 		0.553
(1.00) 		0.128
(0.763) 		0.5
(1.00) 		0.776
(1.00) 		0.768
(1.00) 		0.317
(0.961) 		0.642
(1.00) 		1
(1.00)
SMOC1 12 (2%) 469 0.176
(0.826) 		0.506
(1.00) 		0.211
(0.852) 		0.883
(1.00) 		0.171
(0.826) 		0.51
(1.00) 		0.802
(1.00) 		0.0552
(0.624) 		1
(1.00) 		1
(1.00)
HSD11B1 7 (1%) 474 0.355
(0.988) 		0.227
(0.879) 		0.644
(1.00) 		0.595
(1.00) 		0.102
(0.731) 		0.219
(0.873) 		0.15
(0.792) 		0.504
(1.00)
C1ORF105 4 (1%) 477 0.521
(1.00) 		0.394
(1.00) 		0.04
(0.582) 		0.756
(1.00) 		1
(1.00) 		0.504
(1.00) 		0.35
(0.98) 		0.499
(1.00)
NDUFB11 6 (1%) 475 0.608
(1.00) 		0.388
(1.00) 		0.0827
(0.683) 		0.728
(1.00) 		0.168
(0.824) 		0.888
(1.00) 		0.314
(0.96) 		1
(1.00)
CHM 16 (3%) 465 0.208
(0.851) 		0.0149
(0.39) 		0.359
(0.993) 		0.511
(1.00) 		0.0544
(0.624) 		0.0675
(0.648) 		0.0667
(0.648) 		0.0332
(0.543) 		0.311
(0.954) 		0.022
(0.472)
TFDP1 8 (2%) 473 0.91
(1.00) 		0.184
(0.826) 		0.0129
(0.371) 		0.141
(0.78) 		0.738
(1.00) 		0.651
(1.00) 		1
(1.00) 		0.648
(1.00) 		0.488
(1.00) 		0.512
(1.00)
NLGN2 9 (2%) 472 0.321
(0.964) 		0.163
(0.813) 		1
(1.00) 		0.108
(0.731) 		0.0324
(0.541) 		0.939
(1.00) 		0.672
(1.00) 		0.579
(1.00) 		0.896
(1.00) 		0.295
(0.949)
PLEKHG5 7 (1%) 474 0.565
(1.00) 		0.506
(1.00) 		0.208
(0.851) 		0.939
(1.00) 		0.202
(0.842) 		0.797
(1.00) 		0.792
(1.00) 		0.399
(1.00)
OR5P3 3 (1%) 478 1
(1.00) 		0.647
(1.00) 		1
(1.00) 		0.311
(0.954) 		0.418
(1.00) 		0.569
(1.00) 		0.8
(1.00) 		1
(1.00)
FBXO34 6 (1%) 475 0.0395
(0.58) 		0.292
(0.948) 		0.0653
(0.648) 		0.357
(0.99) 		0.208
(0.851) 		0.0424
(0.595) 		0.302
(0.951) 		0.711
(1.00)
TXLNB 17 (4%) 464 0.653
(1.00) 		0.338
(0.974) 		0.547
(1.00) 		0.978
(1.00) 		0.823
(1.00) 		0.37
(1) 		0.237
(0.883) 		0.572
(1.00) 		0.84
(1.00) 		0.721
(1.00)
NUMA1 17 (4%) 464 0.173
(0.826) 		0.948
(1.00) 		1
(1.00) 		0.379
(1.00) 		0.782
(1.00) 		0.443
(1.00) 		0.468
(1.00) 		0.254
(0.906) 		0.49
(1.00) 		0.59
(1.00)
MEFV 17 (4%) 464 0.294
(0.948) 		0.288
(0.942) 		0.344
(0.974) 		0.141
(0.78) 		0.0721
(0.654) 		0.781
(1.00) 		0.11
(0.731) 		0.0177
(0.415) 		0.702
(1.00) 		0.283
(0.939)
GAN 10 (2%) 471 0.481
(1.00) 		0.909
(1.00) 		0.509
(1.00) 		0.437
(1.00) 		0.733
(1.00) 		0.405
(1.00) 		0.532
(1.00) 		0.791
(1.00) 		1
(1.00) 		0.767
(1.00)
SQSTM1 6 (1%) 475 0.0633
(0.64) 		1
(1.00) 		0.831
(1.00) 		0.278
(0.932) 		0.117
(0.734) 		0.302
(0.951) 		0.58
(1.00) 		0.167
(0.824) 		0.374
(1) 		0.826
(1.00)
DSN1 6 (1%) 475 0.513
(1.00) 		0.0786
(0.673) 		0.344
(0.974) 		0.446
(1.00) 		0.228
(0.879) 		0.0161
(0.402) 		0.0928
(0.72) 		0.157
(0.8) 		1
(1.00) 		0.502
(1.00)
NAAA 3 (1%) 478 1
(1.00) 		0.643
(1.00) 		0.404
(1.00) 		0.784
(1.00) 		0.66
(1.00) 		0.235
(0.883) 		0.402
(1.00)
GART 6 (1%) 475 1
(1.00) 		0.877
(1.00) 		0.197
(0.842) 		0.369
(1) 		0.58
(1.00) 		0.333
(0.974) 		0.849
(1.00) 		0.828
(1.00)
TARBP1 14 (3%) 467 0.398
(1.00) 		1
(1.00) 		0.633
(1.00) 		0.812
(1.00) 		0.625
(1.00) 		0.794
(1.00) 		0.134
(0.772) 		0.532
(1.00) 		0.444
(1.00) 		0.336
(0.974)
HLA-DQA2 3 (1%) 478 0.446
(1.00) 		1
(1.00) 		1
(1.00) 		0.698
(1.00) 		1
(1.00) 		0.874
(1.00) 		1
(1.00) 		0.779
(1.00)
AHDC1 10 (2%) 471 0.00562
(0.262) 		0.117
(0.734) 		0.67
(1.00) 		0.797
(1.00) 		0.703
(1.00) 		0.968
(1.00) 		0.435
(1.00) 		0.453
(1.00)
ARHGEF12 21 (4%) 460 0.931
(1.00) 		0.0718
(0.654) 		1
(1.00) 		0.749
(1.00) 		0.358
(0.993) 		0.179
(0.826) 		0.0622
(0.633) 		0.244
(0.892) 		0.17
(0.824) 		0.109
(0.731)
HERC3 8 (2%) 473 0.316
(0.961) 		1
(1.00) 		0.557
(1.00) 		0.132
(0.772) 		0.227
(0.879) 		0.848
(1.00) 		0.896
(1.00) 		0.449
(1.00)
GALNT14 20 (4%) 461 0.141
(0.78) 		0.431
(1.00) 		0.896
(1.00) 		0.495
(1.00) 		0.062
(0.633) 		0.986
(1.00) 		0.0837
(0.684) 		0.264
(0.925) 		0.433
(1.00) 		0.193
(0.842)
FLT4 18 (4%) 463 0.0694
(0.652) 		0.627
(1.00) 		1
(1.00) 		0.204
(0.843) 		0.391
(1.00) 		0.447
(1.00) 		0.435
(1.00) 		0.507
(1.00) 		0.472
(1.00) 		0.252
(0.903)
ACBD5 11 (2%) 470 0.627
(1.00) 		1
(1.00) 		0.601
(1.00) 		0.832
(1.00) 		0.52
(1.00) 		0.778
(1.00) 		0.711
(1.00) 		0.832
(1.00)
ANKRD44 18 (4%) 463 0.65
(1.00) 		0.641
(1.00) 		0.847
(1.00) 		0.934
(1.00) 		0.452
(1.00) 		0.473
(1.00) 		0.341
(0.974) 		0.946
(1.00) 		0.0793
(0.675) 		0.733
(1.00)
DPEP2 7 (1%) 474 0.648
(1.00) 		1
(1.00) 		0.802
(1.00) 		0.299
(0.951) 		0.883
(1.00) 		0.409
(1.00) 		0.666
(1.00) 		1
(1.00)
TCEAL5 13 (3%) 468 0.566
(1.00) 		0.663
(1.00) 		0.678
(1.00) 		0.956
(1.00) 		0.937
(1.00) 		0.866
(1.00) 		0.931
(1.00) 		0.627
(1.00) 		0.75
(1.00) 		0.573
(1.00)
PTPRH 22 (5%) 459 0.0233
(0.483) 		0.168
(0.824) 		0.0543
(0.624) 		0.34
(0.974) 		0.319
(0.963) 		0.05
(0.624) 		0.21
(0.852) 		0.182
(0.826) 		0.384
(1.00) 		0.529
(1.00)
LMTK3 8 (2%) 473 0.434
(1.00) 		0.444
(1.00) 		0.554
(1.00) 		0.0354
(0.556) 		0.645
(1.00) 		0.718
(1.00) 		0.894
(1.00) 		0.3
(0.951)
ADAR 9 (2%) 472 0.21
(0.852) 		1
(1.00) 		0.616
(1.00) 		0.379
(1.00) 		0.226
(0.879) 		0.663
(1.00) 		0.133
(0.772) 		0.183
(0.826) 		0.791
(1.00) 		0.0935
(0.72)
CLCN5 9 (2%) 472 0.959
(1.00) 		0.0407
(0.584) 		0.12
(0.735) 		0.141
(0.78) 		0.179
(0.826) 		0.242
(0.89) 		0.152
(0.792) 		0.788
(1.00) 		0.667
(1.00) 		0.628
(1.00)
MECP2 9 (2%) 472 0.106
(0.731) 		0.894
(1.00) 		1
(1.00) 		0.517
(1.00) 		1
(1.00) 		0.103
(0.731) 		0.894
(1.00) 		0.661
(1.00)
IL22RA2 6 (1%) 475 0.305
(0.951) 		0.878
(1.00) 		0.0662
(0.648) 		0.574
(1.00) 		0.0294
(0.529) 		0.2
(0.842) 		0.314
(0.96) 		0.142
(0.78)
MYO1H 12 (2%) 469 0.116
(0.734) 		0.765
(1.00) 		0.209
(0.852) 		0.659
(1.00) 		0.198
(0.842) 		0.131
(0.77) 		0.517
(1.00) 		0.513
(1.00) 		0.909
(1.00) 		0.59
(1.00)
SERGEF 9 (2%) 472 0.0969
(0.728) 		0.207
(0.851) 		0.919
(1.00) 		0.888
(1.00) 		0.672
(1.00) 		0.744
(1.00) 		0.231
(0.879) 		0.342
(0.974)
TRIP13 11 (2%) 470 0.942
(1.00) 		0.614
(1.00) 		0.613
(1.00) 		0.832
(1.00) 		0.514
(1.00) 		0.54
(1.00) 		0.338
(0.974) 		0.796
(1.00) 		0.604
(1.00) 		0.204
(0.843)
GPR174 16 (3%) 465 0.18
(0.826) 		0.342
(0.974) 		1
(1.00) 		0.397
(1.00) 		0.364
(0.996) 		0.349
(0.979) 		0.157
(0.8) 		0.0475
(0.617) 		0.0537
(0.624) 		0.517
(1.00)
VARS 9 (2%) 472 0.321
(0.964) 		0.397
(1.00) 		0.702
(1.00) 		0.733
(1.00) 		0.108
(0.731) 		0.48
(1.00) 		0.826
(1.00) 		0.273
(0.932) 		0.894
(1.00) 		0.449
(1.00)
ANKRD7 10 (2%) 471 0.752
(1.00) 		0.0211
(0.465) 		0.368
(1) 		0.935
(1.00) 		0.137
(0.776) 		0.209
(0.852) 		0.0252
(0.5) 		0.0379
(0.575) 		0.816
(1.00) 		0.7
(1.00)
SLC34A1 10 (2%) 471 0.0757
(0.669) 		0.261
(0.919) 		0.539
(1.00) 		0.433
(1.00) 		0.612
(1.00) 		0.564
(1.00) 		0.918
(1.00) 		0.0677
(0.648) 		0.556
(1.00) 		0.305
(0.951)
MSN 8 (2%) 473 0.952
(1.00) 		0.606
(1.00) 		0.613
(1.00) 		0.776
(1.00) 		0.105
(0.731) 		0.452
(1.00) 		0.197
(0.842) 		0.105
(0.731) 		0.814
(1.00) 		0.338
(0.974)
FXYD5 6 (1%) 475 0.775
(1.00) 		0.387
(1.00) 		0.453
(1.00) 		0.306
(0.951) 		0.251
(0.903) 		0.614
(1.00) 		1
(1.00) 		1
(1.00)
NXF5 13 (3%) 468 0.911
(1.00) 		0.612
(1.00) 		1
(1.00) 		0.786
(1.00) 		0.885
(1.00) 		0.794
(1.00) 		0.129
(0.763) 		0.759
(1.00) 		0.774
(1.00) 		0.619
(1.00)
CDK16 5 (1%) 476 0.611
(1.00) 		0.739
(1.00) 		1
(1.00) 		0.853
(1.00) 		0.277
(0.932) 		0.432
(1.00) 		0.849
(1.00) 		1
(1.00)
PTPRN 18 (4%) 463 0.117
(0.734) 		0.225
(0.879) 		0.792
(1.00) 		0.165
(0.818) 		0.137
(0.776) 		0.321
(0.964) 		0.184
(0.826) 		0.752
(1.00) 		0.636
(1.00) 		0.68
(1.00)
FBXW7 12 (2%) 469 0.796
(1.00) 		0.513
(1.00) 		0.813
(1.00) 		0.845
(1.00) 		0.599
(1.00) 		0.318
(0.962) 		0.604
(1.00) 		0.104
(0.731)
SYTL1 5 (1%) 476 0.0779
(0.673) 		0.0378
(0.575) 		0.162
(0.811) 		0.337
(0.974) 		0.0485
(0.619) 		0.271
(0.932) 		0.159
(0.808) 		0.582
(1.00)
PIK3C2B 19 (4%) 462 0.0395
(0.58) 		0.0951
(0.725) 		0.442
(1.00) 		0.463
(1.00) 		0.0994
(0.731) 		0.447
(1.00) 		0.34
(0.974) 		0.424
(1.00) 		0.503
(1.00) 		0.0234
(0.485)
FTSJ1 7 (1%) 474 0.648
(1.00) 		0.141
(0.78) 		0.252
(0.903) 		0.824
(1.00) 		0.183
(0.826) 		0.604
(1.00) 		0.271
(0.932) 		0.198
(0.842) 		0.5
(1.00) 		0.853
(1.00)
IFNA6 6 (1%) 475 0.0939
(0.72) 		1
(1.00) 		0.789
(1.00) 		1
(1.00) 		0.779
(1.00) 		0.417
(1.00) 		1
(1.00) 		0.168
(0.824) 		0.763
(1.00) 		1
(1.00)
MME 14 (3%) 467 0.0115
(0.353) 		0.69
(1.00) 		0.614
(1.00) 		0.379
(1.00) 		0.0112
(0.351) 		0.523
(1.00) 		0.271
(0.932) 		0.0287
(0.529) 		0.552
(1.00) 		0.0188
(0.431)
ILF3 5 (1%) 476 0.353
(0.985) 		1
(1.00) 		0.738
(1.00) 		0.521
(1.00) 		0.145
(0.784) 		0.21
(0.852) 		0.319
(0.963) 		0.58
(1.00)
METTL2B 4 (1%) 477 0.81
(1.00) 		0.693
(1.00) 		0.318
(0.962) 		0.911
(1.00) 		0.0224
(0.476) 		0.297
(0.951) 		0.437
(1.00) 		0.503
(1.00)
ZNF511 9 (2%) 472 0.374
(1) 		0.819
(1.00) 		0.366
(0.998) 		0.714
(1.00) 		0.699
(1.00) 		0.863
(1.00) 		1
(1.00) 		0.137
(0.776) 		0.905
(1.00) 		0.0153
(0.395)
U2AF1L4 5 (1%) 476 0.477
(1.00) 		0.866
(1.00) 		0.74
(1.00) 		0.673
(1.00) 		0.847
(1.00) 		0.251
(0.903) 		0.849
(1.00) 		0.238
(0.883)
HTR3D 4 (1%) 477 0.519
(1.00) 		0.114
(0.734) 		0.148
(0.786) 		0.0951
(0.725) 		1
(1.00) 		0.503
(1.00) 		0.551
(1.00) 		0.817
(1.00)
EIF4E2 4 (1%) 477 0.138
(0.778) 		0.558
(1.00) 		0.389
(1.00) 		0.765
(1.00) 		0.539
(1.00) 		0.621
(1.00) 		0.35
(0.98) 		0.502
(1.00)
GAL3ST4 11 (2%) 470 0.945
(1.00) 		0.0737
(0.66) 		1
(1.00) 		0.442
(1.00) 		0.0125
(0.37) 		0.425
(1.00) 		0.163
(0.814) 		0.9
(1.00)
MBD1 10 (2%) 471 0.0595
(0.624) 		0.608
(1.00) 		0.679
(1.00) 		0.51
(1.00) 		0.347
(0.979) 		0.674
(1.00) 		0.842
(1.00) 		0.302
(0.951) 		0.106
(0.731) 		0.265
(0.926)
WAC 11 (2%) 470 0.547
(1.00) 		1
(1.00) 		1
(1.00) 		0.647
(1.00) 		0.0845
(0.684) 		0.374
(1) 		0.0259
(0.504) 		1
(1.00)
PGBD1 17 (4%) 464 0.796
(1.00) 		0.00898
(0.331) 		0.69
(1.00) 		0.618
(1.00) 		0.0414
(0.584) 		0.213
(0.856) 		0.947
(1.00) 		0.629
(1.00) 		0.383
(1.00) 		0.0784
(0.673)
GRHL2 9 (2%) 472 0.449
(1.00) 		0.127
(0.759) 		0.0758
(0.669) 		0.071
(0.653) 		0.118
(0.734) 		0.423
(1.00) 		0.111
(0.731) 		0.15
(0.792)
TARS2 10 (2%) 471 0.846
(1.00) 		1
(1.00) 		0.878
(1.00) 		0.0967
(0.728) 		0.543
(1.00) 		0.79
(1.00) 		0.794
(1.00) 		0.701
(1.00) 		0.588
(1.00) 		0.862
(1.00) 		0.364
(0.997) 		0.109
(0.731)
ARHGEF10L 8 (2%) 473 0.72
(1.00) 		0.879
(1.00) 		0.184
(0.826) 		0.0393
(0.58) 		0.453
(1.00) 		0.956
(1.00) 		0.0493
(0.62) 		0.65
(1.00) 		0.162
(0.811) 		0.737
(1.00)
EIF4G3 13 (3%) 468 0.0971
(0.728) 		0.598
(1.00) 		0.31
(0.953) 		0.266
(0.929) 		0.179
(0.826) 		0.206
(0.849) 		0.143
(0.781) 		0.768
(1.00)
CRTC3 3 (1%) 478 0.161
(0.811) 		0.198
(0.842) 		0.45
(1.00) 		1
(1.00) 		0.875
(1.00)
COL5A3 20 (4%) 461 0.352
(0.983) 		0.948
(1.00) 		0.333
(0.974) 		0.775
(1.00) 		0.133
(0.772) 		0.143
(0.781) 		0.16
(0.808) 		0.634
(1.00) 		0.0695
(0.652) 		0.117
(0.734)
SF1 12 (2%) 469 0.186
(0.827) 		0.0468
(0.617) 		0.3
(0.951) 		0.713
(1.00) 		0.272
(0.932) 		0.242
(0.89) 		0.0877
(0.701) 		0.11
(0.731)
ZCCHC11 12 (2%) 469 0.225
(0.879) 		0.342
(0.974) 		1
(1.00) 		0.178
(0.826) 		0.198
(0.842) 		0.0157
(0.397) 		1
(1.00) 		0.426
(1.00) 		0.416
(1.00) 		0.917
(1.00)
AIFM1 13 (3%) 468 0.752
(1.00) 		0.566
(1.00) 		0.127
(0.759) 		0.872
(1.00) 		0.781
(1.00) 		0.654
(1.00) 		0.576
(1.00) 		0.187
(0.83) 		0.0598
(0.624) 		0.931
(1.00)
DCAF8 12 (2%) 469 0.657
(1.00) 		1
(1.00) 		0.361
(0.993) 		0.404
(1.00) 		0.0297
(0.531) 		0.413
(1.00) 		0.0257
(0.504) 		0.0258
(0.504) 		0.503
(1.00) 		0.623
(1.00)
PPP2R2A 6 (1%) 475 0.182
(0.826) 		0.0127
(0.371) 		0.262
(0.921) 		0.932
(1.00) 		0.0296
(0.531) 		0.201
(0.842) 		0.348
(0.979) 		0.502
(1.00)
IRF6 9 (2%) 472 0.479
(1.00) 		0.449
(1.00) 		0.109
(0.731) 		0.303
(0.951) 		0.118
(0.734) 		0.273
(0.932) 		1
(1.00) 		1
(1.00)
SIRPA 10 (2%) 471 0.442
(1.00) 		0.589
(1.00) 		0.444
(1.00) 		0.573
(1.00) 		0.855
(1.00) 		0.468
(1.00) 		0.49
(1.00) 		0.709
(1.00) 		0.621
(1.00) 		0.249
(0.903)
ANGPT4 11 (2%) 470 1
(1.00) 		0.558
(1.00) 		1
(1.00) 		0.741
(1.00) 		0.518
(1.00) 		0.518
(1.00) 		1
(1.00) 		0.275
(0.932)
C12ORF71 8 (2%) 473 0.137
(0.776) 		0.184
(0.826) 		0.404
(1.00) 		0.104
(0.731) 		0.224
(0.879) 		0.0323
(0.541) 		0.433
(1.00) 		0.144
(0.783)
CAPG 6 (1%) 475 0.884
(1.00) 		0.52
(1.00) 		0.198
(0.842) 		0.55
(1.00) 		0.421
(1.00) 		0.298
(0.951) 		0.584
(1.00) 		0.141
(0.78)
PCDHGA6 26 (5%) 455 0.0317
(0.539) 		0.605
(1.00) 		0.506
(1.00) 		0.378
(1.00) 		0.381
(1.00) 		0.0571
(0.624) 		0.0752
(0.669) 		0.179
(0.826) 		0.893
(1.00) 		0.0199
(0.447)
ALPP 11 (2%) 470 0.0493
(0.62) 		0.336
(0.974) 		0.615
(1.00) 		0.181
(0.826) 		0.138
(0.778) 		0.306
(0.951) 		0.0139
(0.373) 		0.00843
(0.329) 		0.471
(1.00) 		0.433
(1.00)
ADCY6 5 (1%) 476 0.93
(1.00) 		0.469
(1.00) 		0.453
(1.00) 		0.309
(0.952) 		0.334
(0.974) 		0.164
(0.815) 		0.849
(1.00) 		0.162
(0.811) 		0.00945
(0.334) 		0.782
(1.00)
GOLGA6B 10 (2%) 471 0.549
(1.00) 		0.671
(1.00) 		1
(1.00) 		0.4
(1.00) 		1
(1.00) 		0.576
(1.00) 		0.37
(1) 		0.524
(1.00) 		0.841
(1.00) 		0.116
(0.734)
TMEM135 9 (2%) 472 1
(1.00) 		1
(1.00) 		0.401
(1.00) 		0.669
(1.00) 		0.671
(1.00) 		0.283
(0.939) 		0.655
(1.00) 		0.23
(0.879)
MSR1 8 (2%) 473 0.842
(1.00) 		0.183
(0.826) 		0.74
(1.00) 		0.67
(1.00) 		0.723
(1.00) 		0.848
(1.00) 		0.0461
(0.611) 		0.45
(1.00)
ZNF768 8 (2%) 473 0.749
(1.00) 		0.909
(1.00) 		0.821
(1.00) 		0.831
(1.00) 		0.521
(1.00) 		0.67
(1.00) 		0.813
(1.00) 		0.263
(0.923)
UNC93A 9 (2%) 472 0.133
(0.772) 		0.397
(1.00) 		0.361
(0.993) 		0.0717
(0.654) 		0.0578
(0.624) 		0.236
(0.883) 		0.502
(1.00) 		0.595
(1.00) 		0.55
(1.00) 		0.768
(1.00)
KIRREL 16 (3%) 465 0.00697
(0.296) 		0.34
(0.974) 		0.369
(1) 		0.454
(1.00) 		0.0481
(0.619) 		0.259
(0.914) 		0.0178
(0.416) 		0.0131
(0.371) 		0.841
(1.00) 		0.195
(0.842)
ZBTB5 3 (1%) 478 0.0384
(0.577) 		0.515
(1.00) 		0.392
(1.00) 		0.22
(0.874) 		0.305
(0.951) 		0.349
(0.979)
FANCM 31 (6%) 450 0.192
(0.84) 		0.305
(0.951) 		0.755
(1.00) 		0.154
(0.798) 		0.0482
(0.619) 		0.278
(0.932) 		0.224
(0.879) 		0.136
(0.776) 		0.631
(1.00) 		0.137
(0.776)
HNRNPA3 7 (1%) 474 0.776
(1.00) 		0.802
(1.00) 		0.0266
(0.504) 		0.243
(0.89) 		0.102
(0.731) 		0.18
(0.826) 		0.793
(1.00) 		0.452
(1.00)
LRRFIP2 7 (1%) 474 1
(1.00) 		0.328
(0.97) 		0.125
(0.756) 		0.309
(0.952) 		0.421
(1.00) 		0.267
(0.931) 		0.668
(1.00) 		0.142
(0.78)
MYLK 21 (4%) 460 0.403
(1.00) 		0.279
(0.933) 		0.895
(1.00) 		0.697
(1.00) 		0.465
(1.00) 		0.959
(1.00) 		0.0913
(0.717) 		0.0141
(0.373) 		0.385
(1.00) 		0.516
(1.00)
AMELX 10 (2%) 471 0.627
(1.00) 		0.239
(0.883) 		0.0968
(0.728) 		0.867
(1.00) 		0.92
(1.00) 		0.536
(1.00) 		0.152
(0.794) 		0.627
(1.00) 		0.62
(1.00) 		0.278
(0.932)
TMEM145 11 (2%) 470 0.39
(1.00) 		0.642
(1.00) 		0.0725
(0.654) 		0.619
(1.00) 		0.6
(1.00) 		0.742
(1.00) 		0.289
(0.942) 		0.162
(0.811) 		0.791
(1.00) 		0.106
(0.731)
GCDH 4 (1%) 477 0.81
(1.00) 		0.204
(0.843) 		1
(1.00) 		0.415
(1.00) 		1
(1.00) 		0.456
(1.00) 		1
(1.00) 		0.654
(1.00)
CACNA2D1 40 (8%) 441 0.446
(1.00) 		0.805
(1.00) 		0.0212
(0.465) 		0.0291
(0.529) 		0.31
(0.953) 		0.0396
(0.58) 		0.0206
(0.459) 		0.0364
(0.565) 		0.674
(1.00) 		0.268
(0.932) 		0.449
(1.00) 		0.587
(1.00)
OR52E8 15 (3%) 466 0.765
(1.00) 		0.718
(1.00) 		0.118
(0.734) 		0.14
(0.78) 		0.681
(1.00) 		0.63
(1.00) 		0.347
(0.979) 		0.449
(1.00) 		0.237
(0.883) 		0.608
(1.00)
ITGA2B 12 (2%) 469 0.304
(0.951) 		0.79
(1.00) 		0.0841
(0.684) 		0.252
(0.903) 		0.0957
(0.725) 		0.773
(1.00) 		0.185
(0.826) 		0.00892
(0.331) 		0.551
(1.00) 		0.0803
(0.676)
GKN1 5 (1%) 476 0.17
(0.824) 		0.298
(0.951) 		0.738
(1.00) 		0.0231
(0.481) 		0.847
(1.00) 		0.173
(0.826) 		1
(1.00) 		0.58
(1.00)
ADAM11 12 (2%) 469 0.107
(0.731) 		0.151
(0.792) 		0.457
(1.00) 		1
(1.00) 		0.812
(1.00) 		0.542
(1.00) 		0.139
(0.778) 		0.155
(0.798) 		0.293
(0.948) 		0.338
(0.974)
FZD10 28 (6%) 453 0.0303
(0.533) 		0.15
(0.792) 		0.707
(1.00) 		0.773
(1.00) 		0.504
(1.00) 		0.954
(1.00) 		0.0135
(0.371) 		0.0381
(0.576) 		0.178
(0.826) 		0.229
(0.879)
TEC 11 (2%) 470 0.102
(0.731) 		0.159
(0.808) 		0.182
(0.826) 		0.0401
(0.582) 		0.033
(0.543) 		0.238
(0.883) 		0.0955
(0.725) 		0.32
(0.964) 		0.205
(0.845) 		0.276
(0.932)
MARCH6 13 (3%) 468 0.396
(1.00) 		0.406
(1.00) 		0.0583
(0.624) 		0.0603
(0.624) 		0.288
(0.942) 		0.512
(1.00) 		0.702
(1.00) 		0.171
(0.826) 		0.287
(0.942) 		0.468
(1.00)
AIFM3 6 (1%) 475 0.306
(0.951) 		0.293
(0.948) 		0.197
(0.842) 		0.697
(1.00) 		0.0935
(0.72) 		0.202
(0.842) 		0.196
(0.842) 		0.143
(0.781)
MSRB2 6 (1%) 475 0.777
(1.00) 		0.386
(1.00) 		1
(1.00) 		0.272
(0.932) 		0.457
(1.00) 		0.876
(1.00) 		1
(1.00) 		0.941
(1.00) 		0.551
(1.00) 		1
(1.00)
KDM3B 14 (3%) 467 0.804
(1.00) 		0.936
(1.00) 		0.0841
(0.684) 		0.00806
(0.317) 		0.703
(1.00) 		0.489
(1.00) 		1
(1.00) 		0.756
(1.00) 		0.323
(0.964) 		0.192
(0.842)
THPO 8 (2%) 473 0.876
(1.00) 		0.612
(1.00) 		0.36
(0.993) 		0.727
(1.00) 		1
(1.00) 		0.545
(1.00) 		0.0695
(0.652) 		0.436
(1.00)
CACNA1F 27 (6%) 454 1
(1.00) 		0.935
(1.00) 		0.525
(1.00) 		0.368
(1) 		0.56
(1.00) 		0.101
(0.731) 		0.00768
(0.313) 		0.992
(1.00) 		0.585
(1.00) 		0.677
(1.00)
THY1 5 (1%) 476 0.19
(0.836) 		0.0785
(0.673) 		0.333
(0.974) 		0.391
(1.00) 		0.849
(1.00) 		0.271
(0.932) 		1
(1.00) 		0.71
(1.00)
TTK 18 (4%) 463 0.759
(1.00) 		0.837
(1.00) 		0.0846
(0.685) 		0.197
(0.842) 		0.304
(0.951) 		0.0932
(0.72) 		0.414
(1.00) 		0.133
(0.772) 		0.195
(0.842) 		0.817
(1.00)
GGNBP2 11 (2%) 470 0.798
(1.00) 		0.52
(1.00) 		1
(1.00) 		0.807
(1.00) 		0.932
(1.00) 		0.88
(1.00) 		0.405
(1.00) 		0.777
(1.00) 		0.762
(1.00) 		0.108
(0.731)
CHD8 24 (5%) 457 0.475
(1.00) 		0.0723
(0.654) 		0.989
(1.00) 		0.484
(1.00) 		0.529
(1.00) 		0.511
(1.00) 		0.326
(0.967) 		0.807
(1.00) 		0.348
(0.979) 		0.628
(1.00) 		0.954
(1.00) 		0.574
(1.00)
TBC1D14 8 (2%) 473 0.95
(1.00) 		0.608
(1.00) 		0.82
(1.00) 		0.126
(0.759) 		0.724
(1.00) 		0.118
(0.734) 		0.348
(0.979) 		0.703
(1.00)
GPR128 17 (4%) 464 0.668
(1.00) 		0.0728
(0.655) 		0.895
(1.00) 		0.254
(0.906) 		0.0461
(0.611) 		0.392
(1.00) 		0.469
(1.00) 		0.0137
(0.371) 		0.382
(1.00) 		0.723
(1.00)
RPL6 3 (1%) 478 0.231
(0.879) 		0.201
(0.842) 		1
(1.00) 		0.652
(1.00) 		0.143
(0.781) 		0.1
(0.731) 		0.6
(1.00) 		0.0479
(0.619)
FRZB 9 (2%) 472 0.0578
(0.624) 		0.119
(0.734) 		0.642
(1.00) 		0.811
(1.00) 		0.644
(1.00) 		0.171
(0.826) 		0.434
(1.00) 		0.516
(1.00)
USP34 23 (5%) 458 0.401
(1.00) 		0.242
(0.89) 		0.623
(1.00) 		0.523
(1.00) 		0.573
(1.00) 		0.734
(1.00) 		0.304
(0.951) 		0.231
(0.879) 		0.878
(1.00) 		0.652
(1.00)
LCK 12 (2%) 469 0.655
(1.00) 		0.0678
(0.648) 		0.371
(1) 		0.00965
(0.334) 		0.125
(0.756) 		0.125
(0.756) 		0.00575
(0.266) 		0.104
(0.731) 		0.84
(1.00) 		0.83
(1.00)
FN1 21 (4%) 460 0.407
(1.00) 		0.713
(1.00) 		0.83
(1.00) 		0.0392
(0.58) 		0.522
(1.00) 		0.16
(0.808) 		0.957
(1.00) 		0.388
(1.00) 		0.507
(1.00) 		0.577
(1.00)
RUFY2 8 (2%) 473 0.109
(0.731) 		0.309
(0.952) 		0.362
(0.994) 		0.14
(0.78) 		0.778
(1.00) 		0.832
(1.00) 		0.386
(1.00) 		0.883
(1.00)
YIPF1 3 (1%) 478 0.23
(0.879) 		0.114
(0.734) 		0.435
(1.00)
'TP53 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.5

Table S1.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
TP53 MUTATED 1 4 0 3
TP53 WILD-TYPE 4 3 5 0

Figure S1.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TP53 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.79

Table S2.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
TP53 MUTATED 1 4 3
TP53 WILD-TYPE 6 5 1
'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0029

Table S3.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
TP53 MUTATED 27 76 45 106
TP53 WILD-TYPE 38 134 27 25

Figure S2.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00066 (Fisher's exact test), Q value = 0.074

Table S4.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
TP53 MUTATED 53 86 95
TP53 WILD-TYPE 78 52 66

Figure S3.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00807 (Fisher's exact test), Q value = 0.32

Table S5.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
TP53 MUTATED 11 39 32
TP53 WILD-TYPE 31 32 31

Figure S4.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00019 (Fisher's exact test), Q value = 0.031

Table S6.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
TP53 MUTATED 19 7 31 14 11
TP53 WILD-TYPE 20 25 12 16 21

Figure S5.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0029

Table S7.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
TP53 MUTATED 59 141 55
TP53 WILD-TYPE 91 44 88

Figure S6.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0029

Table S8.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
TP53 MUTATED 19 80 73 6 19 26 32
TP53 WILD-TYPE 53 29 17 38 30 20 36

Figure S7.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0029

Table S9.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
TP53 MUTATED 63 141 49
TP53 WILD-TYPE 112 70 41

Figure S8.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0029

Table S10.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
TP53 MUTATED 24 101 59 69
TP53 WILD-TYPE 46 85 72 20

Figure S9.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S11.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
TP53 MUTATED 76 103 50
TP53 WILD-TYPE 65 79 39
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0029

Table S12.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
TP53 MUTATED 32 152 45
TP53 WILD-TYPE 62 81 40

Figure S10.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S13.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
KRAS MUTATED 2 2 1 0
KRAS WILD-TYPE 3 5 4 3
'KRAS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
KRAS MUTATED 2 2 1
KRAS WILD-TYPE 5 7 3
'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00137 (Fisher's exact test), Q value = 0.12

Table S15.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
KRAS MUTATED 30 70 24 26
KRAS WILD-TYPE 35 140 48 105

Figure S11.  Get High-res Image Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00236 (Fisher's exact test), Q value = 0.17

Table S16.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
KRAS MUTATED 33 35 67
KRAS WILD-TYPE 98 103 94

Figure S12.  Get High-res Image Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'KRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0241 (Fisher's exact test), Q value = 0.49

Table S17.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
KRAS MUTATED 17 12 16
KRAS WILD-TYPE 25 59 47

Figure S13.  Get High-res Image Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'KRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.78

Table S18.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
KRAS MUTATED 6 11 8 8 12
KRAS WILD-TYPE 33 21 35 22 20
'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00997 (Fisher's exact test), Q value = 0.34

Table S19.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
KRAS MUTATED 49 44 56
KRAS WILD-TYPE 101 141 87

Figure S14.  Get High-res Image Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0029

Table S20.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
KRAS MUTATED 23 30 7 17 26 18 28
KRAS WILD-TYPE 49 79 83 27 23 28 40

Figure S15.  Get High-res Image Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00154 (Fisher's exact test), Q value = 0.13

Table S21.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
KRAS MUTATED 71 57 19
KRAS WILD-TYPE 104 154 71

Figure S16.  Get High-res Image Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.015

Table S22.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
KRAS MUTATED 29 62 45 11
KRAS WILD-TYPE 41 124 86 78

Figure S17.  Get High-res Image Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S23.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
KRAS MUTATED 44 61 23
KRAS WILD-TYPE 97 121 66
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.8

Table S24.  Gene #2: 'KRAS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
KRAS MUTATED 37 67 24
KRAS WILD-TYPE 57 166 61
'KEAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.011

Table S25.  Gene #3: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
KEAP1 MUTATED 17 32 24 11
KEAP1 WILD-TYPE 48 178 48 120

Figure S18.  Get High-res Image Gene #3: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KEAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0029

Table S26.  Gene #3: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
KEAP1 MUTATED 12 47 15
KEAP1 WILD-TYPE 119 91 146

Figure S19.  Get High-res Image Gene #3: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'KEAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 5e-04 (Fisher's exact test), Q value = 0.064

Table S27.  Gene #3: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
KEAP1 MUTATED 15 5 15
KEAP1 WILD-TYPE 27 66 48

Figure S20.  Get High-res Image Gene #3: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'KEAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00098 (Fisher's exact test), Q value = 0.096

Table S28.  Gene #3: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
KEAP1 MUTATED 3 13 4 10 5
KEAP1 WILD-TYPE 36 19 39 20 27

Figure S21.  Get High-res Image Gene #3: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'KEAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0029

Table S29.  Gene #3: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
KEAP1 MUTATED 9 23 51
KEAP1 WILD-TYPE 141 162 92

Figure S22.  Get High-res Image Gene #3: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KEAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0029

Table S30.  Gene #3: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
KEAP1 MUTATED 2 7 18 24 7 24 1
KEAP1 WILD-TYPE 70 102 72 20 42 22 67

Figure S23.  Get High-res Image Gene #3: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KEAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.75

Table S31.  Gene #3: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
KEAP1 MUTATED 31 41 9
KEAP1 WILD-TYPE 144 170 81
'KEAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.02

Table S32.  Gene #3: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
KEAP1 MUTATED 20 26 11 24
KEAP1 WILD-TYPE 50 160 120 65

Figure S24.  Get High-res Image Gene #3: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KEAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0535 (Fisher's exact test), Q value = 0.62

Table S33.  Gene #3: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
KEAP1 MUTATED 25 37 8
KEAP1 WILD-TYPE 116 145 81
'KEAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 6e-04 (Fisher's exact test), Q value = 0.07

Table S34.  Gene #3: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
KEAP1 MUTATED 16 50 4
KEAP1 WILD-TYPE 78 183 81

Figure S25.  Get High-res Image Gene #3: 'KEAP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EGFR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.04

Table S35.  Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
EGFR MUTATED 2 26 7 31
EGFR WILD-TYPE 63 184 65 100

Figure S26.  Get High-res Image Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EGFR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S36.  Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
EGFR MUTATED 22 17 19
EGFR WILD-TYPE 109 121 142
'EGFR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00724 (Fisher's exact test), Q value = 0.3

Table S37.  Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
EGFR MUTATED 3 18 5
EGFR WILD-TYPE 39 53 58

Figure S27.  Get High-res Image Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'EGFR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.031

Table S38.  Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
EGFR MUTATED 15 1 6 2 2
EGFR WILD-TYPE 24 31 37 28 30

Figure S28.  Get High-res Image Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'EGFR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0029

Table S39.  Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
EGFR MUTATED 30 33 4
EGFR WILD-TYPE 120 152 139

Figure S29.  Get High-res Image Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EGFR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0052

Table S40.  Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
EGFR MUTATED 16 16 22 0 1 1 11
EGFR WILD-TYPE 56 93 68 44 48 45 57

Figure S30.  Get High-res Image Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EGFR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00504 (Fisher's exact test), Q value = 0.25

Table S41.  Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
EGFR MUTATED 15 31 21
EGFR WILD-TYPE 160 180 69

Figure S31.  Get High-res Image Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'EGFR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0313 (Fisher's exact test), Q value = 0.54

Table S42.  Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
EGFR MUTATED 4 35 19 9
EGFR WILD-TYPE 66 151 112 80

Figure S32.  Get High-res Image Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'EGFR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0701 (Fisher's exact test), Q value = 0.65

Table S43.  Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
EGFR MUTATED 18 20 19
EGFR WILD-TYPE 123 162 70
'EGFR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00257 (Fisher's exact test), Q value = 0.19

Table S44.  Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
EGFR MUTATED 9 26 22
EGFR WILD-TYPE 85 207 63

Figure S33.  Get High-res Image Gene #4: 'EGFR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RBM10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S45.  Gene #5: 'RBM10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
RBM10 MUTATED 3 18 5 7
RBM10 WILD-TYPE 62 192 67 124
'RBM10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0576 (Fisher's exact test), Q value = 0.62

Table S46.  Gene #5: 'RBM10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
RBM10 MUTATED 4 8 16
RBM10 WILD-TYPE 127 130 145
'RBM10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0432 (Fisher's exact test), Q value = 0.6

Table S47.  Gene #5: 'RBM10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
RBM10 MUTATED 4 1 7
RBM10 WILD-TYPE 38 70 56

Figure S34.  Get High-res Image Gene #5: 'RBM10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RBM10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S48.  Gene #5: 'RBM10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
RBM10 MUTATED 2 4 1 3 2
RBM10 WILD-TYPE 37 28 42 27 30
'RBM10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S49.  Gene #5: 'RBM10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
RBM10 MUTATED 10 14 9
RBM10 WILD-TYPE 140 171 134
'RBM10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S50.  Gene #5: 'RBM10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
RBM10 MUTATED 3 8 7 2 2 5 6
RBM10 WILD-TYPE 69 101 83 42 47 41 62
'RBM10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S51.  Gene #5: 'RBM10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
RBM10 MUTATED 13 15 5
RBM10 WILD-TYPE 162 196 85
'RBM10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0541 (Fisher's exact test), Q value = 0.62

Table S52.  Gene #5: 'RBM10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
RBM10 MUTATED 9 8 7 9
RBM10 WILD-TYPE 61 178 124 80
'RBM10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S53.  Gene #5: 'RBM10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
RBM10 MUTATED 12 9 5
RBM10 WILD-TYPE 129 173 84
'RBM10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S54.  Gene #5: 'RBM10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
RBM10 MUTATED 6 13 7
RBM10 WILD-TYPE 88 220 78
'SMARCA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S55.  Gene #6: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SMARCA4 MUTATED 4 15 9 10
SMARCA4 WILD-TYPE 61 195 63 121
'SMARCA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0029

Table S56.  Gene #6: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SMARCA4 MUTATED 6 26 4
SMARCA4 WILD-TYPE 125 112 157

Figure S35.  Get High-res Image Gene #6: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SMARCA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S57.  Gene #6: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SMARCA4 MUTATED 1 4 4
SMARCA4 WILD-TYPE 41 67 59
'SMARCA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S58.  Gene #6: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SMARCA4 MUTATED 1 3 2 1 2
SMARCA4 WILD-TYPE 38 29 41 29 30
'SMARCA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0071

Table S59.  Gene #6: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SMARCA4 MUTATED 1 18 19
SMARCA4 WILD-TYPE 149 167 124

Figure S36.  Get High-res Image Gene #6: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SMARCA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0029

Table S60.  Gene #6: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SMARCA4 MUTATED 0 5 13 2 4 14 0
SMARCA4 WILD-TYPE 72 104 77 42 45 32 68

Figure S37.  Get High-res Image Gene #6: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00542 (Fisher's exact test), Q value = 0.26

Table S61.  Gene #6: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SMARCA4 MUTATED 7 26 4
SMARCA4 WILD-TYPE 168 185 86

Figure S38.  Get High-res Image Gene #6: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00034 (Fisher's exact test), Q value = 0.049

Table S62.  Gene #6: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SMARCA4 MUTATED 6 14 2 15
SMARCA4 WILD-TYPE 64 172 129 74

Figure S39.  Get High-res Image Gene #6: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0511 (Fisher's exact test), Q value = 0.62

Table S63.  Gene #6: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SMARCA4 MUTATED 7 22 5
SMARCA4 WILD-TYPE 134 160 84
'SMARCA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0071

Table S64.  Gene #6: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SMARCA4 MUTATED 1 31 2
SMARCA4 WILD-TYPE 93 202 83

Figure S40.  Get High-res Image Gene #6: 'SMARCA4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'STK11 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0029

Table S65.  Gene #7: 'STK11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
STK11 MUTATED 26 29 15 7
STK11 WILD-TYPE 39 181 57 124

Figure S41.  Get High-res Image Gene #7: 'STK11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'STK11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00057 (Fisher's exact test), Q value = 0.069

Table S66.  Gene #7: 'STK11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
STK11 MUTATED 10 34 26
STK11 WILD-TYPE 121 104 135

Figure S42.  Get High-res Image Gene #7: 'STK11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'STK11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00404 (Fisher's exact test), Q value = 0.23

Table S67.  Gene #7: 'STK11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
STK11 MUTATED 12 5 15
STK11 WILD-TYPE 30 66 48

Figure S43.  Get High-res Image Gene #7: 'STK11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'STK11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0052

Table S68.  Gene #7: 'STK11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
STK11 MUTATED 1 16 4 6 5
STK11 WILD-TYPE 38 16 39 24 27

Figure S44.  Get High-res Image Gene #7: 'STK11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'STK11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.0029

Table S69.  Gene #7: 'STK11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
STK11 MUTATED 10 9 56
STK11 WILD-TYPE 140 176 87

Figure S45.  Get High-res Image Gene #7: 'STK11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'STK11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0029

Table S70.  Gene #7: 'STK11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
STK11 MUTATED 3 2 1 24 25 17 3
STK11 WILD-TYPE 69 107 89 20 24 29 65

Figure S46.  Get High-res Image Gene #7: 'STK11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STK11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S71.  Gene #7: 'STK11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
STK11 MUTATED 26 38 11
STK11 WILD-TYPE 149 173 79
'STK11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.011 (Fisher's exact test), Q value = 0.35

Table S72.  Gene #7: 'STK11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
STK11 MUTATED 18 30 11 16
STK11 WILD-TYPE 52 156 120 73

Figure S47.  Get High-res Image Gene #7: 'STK11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'STK11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.85

Table S73.  Gene #7: 'STK11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
STK11 MUTATED 23 36 10
STK11 WILD-TYPE 118 146 79
'STK11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.73

Table S74.  Gene #7: 'STK11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
STK11 MUTATED 18 43 8
STK11 WILD-TYPE 76 190 77
'RB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S75.  Gene #8: 'RB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
RB1 MUTATED 3 9 3 11
RB1 WILD-TYPE 62 201 69 120
'RB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0808 (Fisher's exact test), Q value = 0.68

Table S76.  Gene #8: 'RB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
RB1 MUTATED 4 13 8
RB1 WILD-TYPE 127 125 153
'RB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.97

Table S77.  Gene #8: 'RB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
RB1 MUTATED 3 4 1
RB1 WILD-TYPE 39 67 62
'RB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S78.  Gene #8: 'RB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
RB1 MUTATED 3 0 3 1 1
RB1 WILD-TYPE 36 32 40 29 31
'RB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0722 (Fisher's exact test), Q value = 0.65

Table S79.  Gene #8: 'RB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
RB1 MUTATED 9 14 3
RB1 WILD-TYPE 141 171 140
'RB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.02

Table S80.  Gene #8: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
RB1 MUTATED 2 2 16 0 1 1 4
RB1 WILD-TYPE 70 107 74 44 48 45 64

Figure S48.  Get High-res Image Gene #8: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.79

Table S81.  Gene #8: 'RB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
RB1 MUTATED 5 15 6
RB1 WILD-TYPE 170 196 84
'RB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0265 (Fisher's exact test), Q value = 0.5

Table S82.  Gene #8: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
RB1 MUTATED 0 8 10 8
RB1 WILD-TYPE 70 178 121 81

Figure S49.  Get High-res Image Gene #8: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0575 (Fisher's exact test), Q value = 0.62

Table S83.  Gene #8: 'RB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
RB1 MUTATED 10 14 1
RB1 WILD-TYPE 131 168 88
'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S84.  Gene #8: 'RB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
RB1 MUTATED 5 15 5
RB1 WILD-TYPE 89 218 80
'ARID1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S85.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ARID1A MUTATED 4 14 6 6
ARID1A WILD-TYPE 61 196 66 125
'ARID1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S86.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ARID1A MUTATED 7 9 12
ARID1A WILD-TYPE 124 129 149
'ARID1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S87.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ARID1A MUTATED 3 3 4
ARID1A WILD-TYPE 39 68 59
'ARID1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S88.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ARID1A MUTATED 3 3 2 1 1
ARID1A WILD-TYPE 36 29 41 29 31
'ARID1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S89.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ARID1A MUTATED 7 15 8
ARID1A WILD-TYPE 143 170 135
'ARID1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S90.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ARID1A MUTATED 7 6 7 2 3 2 3
ARID1A WILD-TYPE 65 103 83 42 46 44 65
'ARID1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.9

Table S91.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ARID1A MUTATED 8 18 4
ARID1A WILD-TYPE 167 193 86
'ARID1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.078 (Fisher's exact test), Q value = 0.67

Table S92.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ARID1A MUTATED 2 9 8 11
ARID1A WILD-TYPE 68 177 123 78
'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0549 (Fisher's exact test), Q value = 0.62

Table S93.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ARID1A MUTATED 11 6 9
ARID1A WILD-TYPE 130 176 80
'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.73

Table S94.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ARID1A MUTATED 2 19 5
ARID1A WILD-TYPE 92 214 80
'NF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S95.  Gene #10: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
NF1 MUTATED 0 2 1 1
NF1 WILD-TYPE 5 5 4 2
'NF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S96.  Gene #10: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
NF1 MUTATED 2 1 1
NF1 WILD-TYPE 5 8 3
'NF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S97.  Gene #10: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
NF1 MUTATED 5 22 10 18
NF1 WILD-TYPE 60 188 62 113
'NF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S98.  Gene #10: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
NF1 MUTATED 15 18 19
NF1 WILD-TYPE 116 120 142
'NF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S99.  Gene #10: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
NF1 MUTATED 4 10 7
NF1 WILD-TYPE 38 61 56
'NF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.91

Table S100.  Gene #10: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
NF1 MUTATED 3 2 8 2 6
NF1 WILD-TYPE 36 30 35 28 26
'NF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0617 (Fisher's exact test), Q value = 0.63

Table S101.  Gene #10: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
NF1 MUTATED 12 29 13
NF1 WILD-TYPE 138 156 130
'NF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.91

Table S102.  Gene #10: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
NF1 MUTATED 4 18 12 2 5 5 8
NF1 WILD-TYPE 68 91 78 42 44 41 60
'NF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.73

Table S103.  Gene #10: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
NF1 MUTATED 13 29 12
NF1 WILD-TYPE 162 182 78
'NF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.99

Table S104.  Gene #10: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
NF1 MUTATED 4 22 15 13
NF1 WILD-TYPE 66 164 116 76
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.73

Table S105.  Gene #10: 'NF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
NF1 MUTATED 17 15 15
NF1 WILD-TYPE 124 167 74
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.086 (Fisher's exact test), Q value = 0.69

Table S106.  Gene #10: 'NF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
NF1 MUTATED 5 32 10
NF1 WILD-TYPE 89 201 75
'BRAF MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.78

Table S107.  Gene #11: 'BRAF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
BRAF MUTATED 0 3 0 0
BRAF WILD-TYPE 5 4 5 3
'BRAF MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S108.  Gene #11: 'BRAF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
BRAF MUTATED 1 2 0
BRAF WILD-TYPE 6 7 4
'BRAF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S109.  Gene #11: 'BRAF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
BRAF MUTATED 5 16 4 14
BRAF WILD-TYPE 60 194 68 117
'BRAF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0793 (Fisher's exact test), Q value = 0.68

Table S110.  Gene #11: 'BRAF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
BRAF MUTATED 8 8 20
BRAF WILD-TYPE 123 130 141
'BRAF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S111.  Gene #11: 'BRAF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
BRAF MUTATED 5 6 4
BRAF WILD-TYPE 37 65 59
'BRAF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S112.  Gene #11: 'BRAF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
BRAF MUTATED 4 3 4 1 3
BRAF WILD-TYPE 35 29 39 29 29
'BRAF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.93

Table S113.  Gene #11: 'BRAF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
BRAF MUTATED 10 20 9
BRAF WILD-TYPE 140 165 134
'BRAF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S114.  Gene #11: 'BRAF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
BRAF MUTATED 5 14 8 4 2 1 5
BRAF WILD-TYPE 67 95 82 40 47 45 63
'BRAF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S115.  Gene #11: 'BRAF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
BRAF MUTATED 16 18 5
BRAF WILD-TYPE 159 193 85
'BRAF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.033 (Fisher's exact test), Q value = 0.54

Table S116.  Gene #11: 'BRAF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
BRAF MUTATED 10 19 5 5
BRAF WILD-TYPE 60 167 126 84

Figure S50.  Get High-res Image Gene #11: 'BRAF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S117.  Gene #11: 'BRAF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
BRAF MUTATED 12 15 6
BRAF WILD-TYPE 129 167 83
'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S118.  Gene #11: 'BRAF MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
BRAF MUTATED 8 16 9
BRAF WILD-TYPE 86 217 76
'MGA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.93

Table S119.  Gene #12: 'MGA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MGA MUTATED 5 12 8 14
MGA WILD-TYPE 60 198 64 117
'MGA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 0.62

Table S120.  Gene #12: 'MGA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MGA MUTATED 5 15 16
MGA WILD-TYPE 126 123 145
'MGA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S121.  Gene #12: 'MGA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
MGA MUTATED 3 5 7
MGA WILD-TYPE 39 66 56
'MGA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.79

Table S122.  Gene #12: 'MGA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
MGA MUTATED 1 4 7 2 1
MGA WILD-TYPE 38 28 36 28 31
'MGA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0028 (Fisher's exact test), Q value = 0.19

Table S123.  Gene #12: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MGA MUTATED 7 26 7
MGA WILD-TYPE 143 159 136

Figure S51.  Get High-res Image Gene #12: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MGA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.8

Table S124.  Gene #12: 'MGA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MGA MUTATED 3 15 11 3 2 2 4
MGA WILD-TYPE 69 94 79 41 47 44 64
'MGA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0314 (Fisher's exact test), Q value = 0.54

Table S125.  Gene #12: 'MGA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MGA MUTATED 8 25 6
MGA WILD-TYPE 167 186 84

Figure S52.  Get High-res Image Gene #12: 'MGA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MGA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0676 (Fisher's exact test), Q value = 0.65

Table S126.  Gene #12: 'MGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MGA MUTATED 5 17 5 12
MGA WILD-TYPE 65 169 126 77
'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.97

Table S127.  Gene #12: 'MGA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MGA MUTATED 13 18 4
MGA WILD-TYPE 128 164 85
'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0805 (Fisher's exact test), Q value = 0.68

Table S128.  Gene #12: 'MGA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MGA MUTATED 3 23 9
MGA WILD-TYPE 91 210 76
'CHRND MUTATION STATUS' versus 'CN_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.85

Table S129.  Gene #13: 'CHRND MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CHRND MUTATED 1 5 4 8
CHRND WILD-TYPE 64 205 68 123
'CHRND MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S130.  Gene #13: 'CHRND MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CHRND MUTATED 3 5 7
CHRND WILD-TYPE 128 133 154
'CHRND MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S131.  Gene #13: 'CHRND MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
CHRND MUTATED 1 2 4
CHRND WILD-TYPE 41 69 59
'CHRND MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.76

Table S132.  Gene #13: 'CHRND MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
CHRND MUTATED 0 2 2 3 0
CHRND WILD-TYPE 39 30 41 27 32
'CHRND MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.92

Table S133.  Gene #13: 'CHRND MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CHRND MUTATED 3 7 8
CHRND WILD-TYPE 147 178 135
'CHRND MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0958 (Fisher's exact test), Q value = 0.72

Table S134.  Gene #13: 'CHRND MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CHRND MUTATED 0 5 2 1 5 1 4
CHRND WILD-TYPE 72 104 88 43 44 45 64
'CHRND MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.83

Table S135.  Gene #13: 'CHRND MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CHRND MUTATED 4 12 2
CHRND WILD-TYPE 171 199 88
'CHRND MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.062 (Fisher's exact test), Q value = 0.63

Table S136.  Gene #13: 'CHRND MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CHRND MUTATED 1 6 3 8
CHRND WILD-TYPE 69 180 128 81
'CHRND MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S137.  Gene #13: 'CHRND MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CHRND MUTATED 3 7 4
CHRND WILD-TYPE 138 175 85
'CHRND MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.93

Table S138.  Gene #13: 'CHRND MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CHRND MUTATED 2 11 1
CHRND WILD-TYPE 92 222 84
'MET MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0852 (Fisher's exact test), Q value = 0.69

Table S139.  Gene #14: 'MET MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MET MUTATED 0 12 1 8
MET WILD-TYPE 65 198 71 123
'MET MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S140.  Gene #14: 'MET MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MET MUTATED 5 5 9
MET WILD-TYPE 126 133 152
'MET MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S141.  Gene #14: 'MET MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
MET MUTATED 3 7 4
MET WILD-TYPE 39 64 59
'MET MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.73

Table S142.  Gene #14: 'MET MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
MET MUTATED 2 1 8 1 2
MET WILD-TYPE 37 31 35 29 30
'MET MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S143.  Gene #14: 'MET MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MET MUTATED 7 10 4
MET WILD-TYPE 143 175 139
'MET MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S144.  Gene #14: 'MET MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MET MUTATED 3 6 4 1 0 2 5
MET WILD-TYPE 69 103 86 43 49 44 63
'MET MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0866 (Fisher's exact test), Q value = 0.69

Table S145.  Gene #14: 'MET MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MET MUTATED 9 5 7
MET WILD-TYPE 166 206 83
'MET MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.85

Table S146.  Gene #14: 'MET MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MET MUTATED 2 9 9 1
MET WILD-TYPE 68 177 122 88
'MET MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S147.  Gene #14: 'MET MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MET MUTATED 8 6 5
MET WILD-TYPE 133 176 84
'MET MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.82

Table S148.  Gene #14: 'MET MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MET MUTATED 2 10 7
MET WILD-TYPE 92 223 78
'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S149.  Gene #15: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CDKN2A MUTATED 3 7 2 4
CDKN2A WILD-TYPE 62 203 70 127
'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S150.  Gene #15: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CDKN2A MUTATED 2 4 6
CDKN2A WILD-TYPE 129 134 155
'CDKN2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S151.  Gene #15: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
CDKN2A MUTATED 1 3 4
CDKN2A WILD-TYPE 41 68 59
'CDKN2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S152.  Gene #15: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
CDKN2A MUTATED 2 2 1 2 1
CDKN2A WILD-TYPE 37 30 42 28 31
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0593 (Fisher's exact test), Q value = 0.62

Table S153.  Gene #15: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CDKN2A MUTATED 1 9 6
CDKN2A WILD-TYPE 149 176 137
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.88

Table S154.  Gene #15: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CDKN2A MUTATED 0 6 5 1 0 2 2
CDKN2A WILD-TYPE 72 103 85 43 49 44 66
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S155.  Gene #15: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CDKN2A MUTATED 6 6 4
CDKN2A WILD-TYPE 169 205 86
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S156.  Gene #15: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CDKN2A MUTATED 2 6 6 2
CDKN2A WILD-TYPE 68 180 125 87
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.88

Table S157.  Gene #15: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CDKN2A MUTATED 3 3 5
CDKN2A WILD-TYPE 138 179 84
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S158.  Gene #15: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CDKN2A MUTATED 3 5 3
CDKN2A WILD-TYPE 91 228 82
'U2AF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S159.  Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
U2AF1 MUTATED 1 5 1 5
U2AF1 WILD-TYPE 64 205 71 126
'U2AF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S160.  Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
U2AF1 MUTATED 3 3 4
U2AF1 WILD-TYPE 128 135 157
'U2AF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.94

Table S161.  Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
U2AF1 MUTATED 1 3 0
U2AF1 WILD-TYPE 41 68 63
'U2AF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S162.  Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
U2AF1 MUTATED 1 0 2 0 1
U2AF1 WILD-TYPE 38 32 41 30 31
'U2AF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.5

Table S163.  Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
U2AF1 MUTATED 4 8 0
U2AF1 WILD-TYPE 146 177 143

Figure S53.  Get High-res Image Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'U2AF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.84

Table S164.  Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
U2AF1 MUTATED 1 7 2 0 0 0 2
U2AF1 WILD-TYPE 71 102 88 44 49 46 66
'U2AF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0214 (Fisher's exact test), Q value = 0.47

Table S165.  Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
U2AF1 MUTATED 9 3 0
U2AF1 WILD-TYPE 166 208 90

Figure S54.  Get High-res Image Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'U2AF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S166.  Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
U2AF1 MUTATED 3 4 3 2
U2AF1 WILD-TYPE 67 182 128 87
'U2AF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 0.59

Table S167.  Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
U2AF1 MUTATED 7 3 0
U2AF1 WILD-TYPE 134 179 89

Figure S55.  Get High-res Image Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'U2AF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S168.  Gene #16: 'U2AF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
U2AF1 MUTATED 2 5 3
U2AF1 WILD-TYPE 92 228 82
'SETD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.85

Table S169.  Gene #17: 'SETD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SETD2 MUTATED 2 16 7 5
SETD2 WILD-TYPE 63 194 65 126
'SETD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S170.  Gene #17: 'SETD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SETD2 MUTATED 10 6 13
SETD2 WILD-TYPE 121 132 148
'SETD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S171.  Gene #17: 'SETD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SETD2 MUTATED 4 4 4
SETD2 WILD-TYPE 38 67 59
'SETD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.83

Table S172.  Gene #17: 'SETD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SETD2 MUTATED 2 0 3 2 5
SETD2 WILD-TYPE 37 32 40 28 27
'SETD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.73

Table S173.  Gene #17: 'SETD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SETD2 MUTATED 12 14 4
SETD2 WILD-TYPE 138 171 139
'SETD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.88

Table S174.  Gene #17: 'SETD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SETD2 MUTATED 8 7 7 1 0 3 4
SETD2 WILD-TYPE 64 102 83 43 49 43 64
'SETD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S175.  Gene #17: 'SETD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SETD2 MUTATED 13 10 6
SETD2 WILD-TYPE 162 201 84
'SETD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.97 (Fisher's exact test), Q value = 1

Table S176.  Gene #17: 'SETD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SETD2 MUTATED 4 12 7 6
SETD2 WILD-TYPE 66 174 124 83
'SETD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.37

Table S177.  Gene #17: 'SETD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SETD2 MUTATED 12 6 11
SETD2 WILD-TYPE 129 176 78

Figure S56.  Get High-res Image Gene #17: 'SETD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SETD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0546 (Fisher's exact test), Q value = 0.62

Table S178.  Gene #17: 'SETD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SETD2 MUTATED 2 18 9
SETD2 WILD-TYPE 92 215 76
'DNMT3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 1

Table S179.  Gene #18: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
DNMT3A MUTATED 3 9 4 3
DNMT3A WILD-TYPE 62 201 68 128
'DNMT3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S180.  Gene #18: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
DNMT3A MUTATED 6 8 5
DNMT3A WILD-TYPE 125 130 156
'DNMT3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.83

Table S181.  Gene #18: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
DNMT3A MUTATED 0 1 4
DNMT3A WILD-TYPE 42 70 59
'DNMT3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.98

Table S182.  Gene #18: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
DNMT3A MUTATED 0 1 2 2 0
DNMT3A WILD-TYPE 39 31 41 28 32
'DNMT3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S183.  Gene #18: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
DNMT3A MUTATED 4 8 7
DNMT3A WILD-TYPE 146 177 136
'DNMT3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S184.  Gene #18: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
DNMT3A MUTATED 3 3 5 1 2 4 1
DNMT3A WILD-TYPE 69 106 85 43 47 42 67
'DNMT3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.97

Table S185.  Gene #18: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
DNMT3A MUTATED 4 11 4
DNMT3A WILD-TYPE 171 200 86
'DNMT3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.73

Table S186.  Gene #18: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
DNMT3A MUTATED 2 5 4 8
DNMT3A WILD-TYPE 68 181 127 81
'DNMT3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0095 (Fisher's exact test), Q value = 0.33

Table S187.  Gene #18: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
DNMT3A MUTATED 1 13 4
DNMT3A WILD-TYPE 140 169 85

Figure S57.  Get High-res Image Gene #18: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DNMT3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00782 (Fisher's exact test), Q value = 0.32

Table S188.  Gene #18: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
DNMT3A MUTATED 0 16 2
DNMT3A WILD-TYPE 94 217 83

Figure S58.  Get High-res Image Gene #18: 'DNMT3A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ERBB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S189.  Gene #19: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ERBB2 MUTATED 0 6 2 3
ERBB2 WILD-TYPE 65 204 70 128
'ERBB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.098 (Fisher's exact test), Q value = 0.73

Table S190.  Gene #19: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ERBB2 MUTATED 2 0 5
ERBB2 WILD-TYPE 129 138 156
'ERBB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S191.  Gene #19: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ERBB2 MUTATED 1 3 3
ERBB2 WILD-TYPE 41 68 60
'ERBB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S192.  Gene #19: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ERBB2 MUTATED 3 1 2 1 0
ERBB2 WILD-TYPE 36 31 41 29 32
'ERBB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S193.  Gene #19: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ERBB2 MUTATED 2 6 3
ERBB2 WILD-TYPE 148 179 140
'ERBB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.78

Table S194.  Gene #19: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ERBB2 MUTATED 3 6 1 1 0 0 0
ERBB2 WILD-TYPE 69 103 89 43 49 46 68
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S195.  Gene #19: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ERBB2 MUTATED 5 5 1
ERBB2 WILD-TYPE 170 206 89
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.89

Table S196.  Gene #19: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ERBB2 MUTATED 4 4 2 1
ERBB2 WILD-TYPE 66 182 129 88
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S197.  Gene #19: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ERBB2 MUTATED 3 3 0
ERBB2 WILD-TYPE 138 179 89
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.88

Table S198.  Gene #19: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ERBB2 MUTATED 3 3 0
ERBB2 WILD-TYPE 91 230 85
'ATM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.033

Table S199.  Gene #20: 'ATM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ATM MUTATED 12 16 11 3
ATM WILD-TYPE 53 194 61 128

Figure S59.  Get High-res Image Gene #20: 'ATM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00076 (Fisher's exact test), Q value = 0.08

Table S200.  Gene #20: 'ATM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ATM MUTATED 2 17 16
ATM WILD-TYPE 129 121 145

Figure S60.  Get High-res Image Gene #20: 'ATM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ATM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0992 (Fisher's exact test), Q value = 0.73

Table S201.  Gene #20: 'ATM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ATM MUTATED 6 3 8
ATM WILD-TYPE 36 68 55
'ATM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.82

Table S202.  Gene #20: 'ATM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ATM MUTATED 3 6 1 3 4
ATM WILD-TYPE 36 26 42 27 28
'ATM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00196 (Fisher's exact test), Q value = 0.15

Table S203.  Gene #20: 'ATM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ATM MUTATED 8 11 23
ATM WILD-TYPE 142 174 120

Figure S61.  Get High-res Image Gene #20: 'ATM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ATM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00061 (Fisher's exact test), Q value = 0.07

Table S204.  Gene #20: 'ATM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ATM MUTATED 6 6 4 6 13 5 2
ATM WILD-TYPE 66 103 86 38 36 41 66

Figure S62.  Get High-res Image Gene #20: 'ATM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S205.  Gene #20: 'ATM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ATM MUTATED 14 20 8
ATM WILD-TYPE 161 191 82
'ATM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0536 (Fisher's exact test), Q value = 0.62

Table S206.  Gene #20: 'ATM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ATM MUTATED 8 23 6 5
ATM WILD-TYPE 62 163 125 84
'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S207.  Gene #20: 'ATM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ATM MUTATED 9 18 8
ATM WILD-TYPE 132 164 81
'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S208.  Gene #20: 'ATM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ATM MUTATED 8 21 6
ATM WILD-TYPE 86 212 79
'COL5A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.35

Table S209.  Gene #21: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
COL5A2 MUTATED 6 12 13 17
COL5A2 WILD-TYPE 59 198 59 114

Figure S63.  Get High-res Image Gene #21: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'COL5A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.072 (Fisher's exact test), Q value = 0.65

Table S210.  Gene #21: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
COL5A2 MUTATED 8 20 15
COL5A2 WILD-TYPE 123 118 146
'COL5A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00263 (Fisher's exact test), Q value = 0.19

Table S211.  Gene #21: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
COL5A2 MUTATED 0 6 12
COL5A2 WILD-TYPE 42 65 51

Figure S64.  Get High-res Image Gene #21: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'COL5A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S212.  Gene #21: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
COL5A2 MUTATED 4 4 5 4 1
COL5A2 WILD-TYPE 35 28 38 26 31
'COL5A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0588 (Fisher's exact test), Q value = 0.62

Table S213.  Gene #21: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
COL5A2 MUTATED 8 23 17
COL5A2 WILD-TYPE 142 162 126
'COL5A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0757 (Fisher's exact test), Q value = 0.67

Table S214.  Gene #21: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
COL5A2 MUTATED 2 12 13 2 7 7 5
COL5A2 WILD-TYPE 70 97 77 42 42 39 63
'COL5A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00049 (Fisher's exact test), Q value = 0.064

Table S215.  Gene #21: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
COL5A2 MUTATED 6 31 10
COL5A2 WILD-TYPE 169 180 80

Figure S65.  Get High-res Image Gene #21: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'COL5A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00123 (Fisher's exact test), Q value = 0.11

Table S216.  Gene #21: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
COL5A2 MUTATED 2 21 7 17
COL5A2 WILD-TYPE 68 165 124 72

Figure S66.  Get High-res Image Gene #21: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'COL5A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.97

Table S217.  Gene #21: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
COL5A2 MUTATED 10 22 10
COL5A2 WILD-TYPE 131 160 79
'COL5A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0105 (Fisher's exact test), Q value = 0.34

Table S218.  Gene #21: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
COL5A2 MUTATED 5 33 4
COL5A2 WILD-TYPE 89 200 81

Figure S67.  Get High-res Image Gene #21: 'COL5A2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NFE2L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S219.  Gene #22: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
NFE2L2 MUTATED 2 8 1 2
NFE2L2 WILD-TYPE 63 202 71 129
'NFE2L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S220.  Gene #22: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
NFE2L2 MUTATED 2 5 5
NFE2L2 WILD-TYPE 129 133 156
'NFE2L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S221.  Gene #22: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
NFE2L2 MUTATED 1 2 1
NFE2L2 WILD-TYPE 41 69 62
'NFE2L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S222.  Gene #22: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
NFE2L2 MUTATED 0 1 1 0 2
NFE2L2 WILD-TYPE 39 31 42 30 30
'NFE2L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0739 (Fisher's exact test), Q value = 0.66

Table S223.  Gene #22: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
NFE2L2 MUTATED 1 5 7
NFE2L2 WILD-TYPE 149 180 136
'NFE2L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0384 (Fisher's exact test), Q value = 0.58

Table S224.  Gene #22: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
NFE2L2 MUTATED 0 2 3 3 0 4 1
NFE2L2 WILD-TYPE 72 107 87 41 49 42 67

Figure S68.  Get High-res Image Gene #22: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NFE2L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S225.  Gene #22: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
NFE2L2 MUTATED 4 6 2
NFE2L2 WILD-TYPE 171 205 88
'NFE2L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.84

Table S226.  Gene #22: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
NFE2L2 MUTATED 2 8 1 1
NFE2L2 WILD-TYPE 68 178 130 88
'NFE2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S227.  Gene #22: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
NFE2L2 MUTATED 2 6 2
NFE2L2 WILD-TYPE 139 176 87
'NFE2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S228.  Gene #22: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
NFE2L2 MUTATED 3 6 1
NFE2L2 WILD-TYPE 91 227 84
'PPP3CA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S229.  Gene #23: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PPP3CA MUTATED 2 6 1 3
PPP3CA WILD-TYPE 63 204 71 128
'PPP3CA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.95

Table S230.  Gene #23: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PPP3CA MUTATED 1 4 6
PPP3CA WILD-TYPE 130 134 155
'PPP3CA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S231.  Gene #23: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PPP3CA MUTATED 2 5 5
PPP3CA WILD-TYPE 148 180 138
'PPP3CA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0162 (Fisher's exact test), Q value = 0.4

Table S232.  Gene #23: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PPP3CA MUTATED 1 3 3 5 0 0 0
PPP3CA WILD-TYPE 71 106 87 39 49 46 68

Figure S69.  Get High-res Image Gene #23: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PPP3CA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.78

Table S233.  Gene #23: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PPP3CA MUTATED 2 9 1
PPP3CA WILD-TYPE 173 202 89
'PPP3CA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.88

Table S234.  Gene #23: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PPP3CA MUTATED 1 8 1 2
PPP3CA WILD-TYPE 69 178 130 87
'PPP3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S235.  Gene #23: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PPP3CA MUTATED 3 7 1
PPP3CA WILD-TYPE 138 175 88
'PPP3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.9

Table S236.  Gene #23: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PPP3CA MUTATED 3 8 0
PPP3CA WILD-TYPE 91 225 85
'FCRLA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.83

Table S237.  Gene #24: 'FCRLA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
FCRLA MUTATED 4 6 0 5
FCRLA WILD-TYPE 61 204 72 126
'FCRLA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S238.  Gene #24: 'FCRLA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
FCRLA MUTATED 4 4 7
FCRLA WILD-TYPE 127 134 154
'FCRLA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S239.  Gene #24: 'FCRLA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
FCRLA MUTATED 2 3 1
FCRLA WILD-TYPE 40 68 62
'FCRLA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S240.  Gene #24: 'FCRLA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
FCRLA MUTATED 2 0 2 0 2
FCRLA WILD-TYPE 37 32 41 30 30
'FCRLA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S241.  Gene #24: 'FCRLA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
FCRLA MUTATED 4 7 4
FCRLA WILD-TYPE 146 178 139
'FCRLA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S242.  Gene #24: 'FCRLA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
FCRLA MUTATED 1 5 1 0 3 2 3
FCRLA WILD-TYPE 71 104 89 44 46 44 65
'FCRLA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S243.  Gene #24: 'FCRLA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
FCRLA MUTATED 5 7 3
FCRLA WILD-TYPE 170 204 87
'FCRLA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S244.  Gene #24: 'FCRLA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
FCRLA MUTATED 3 6 3 3
FCRLA WILD-TYPE 67 180 128 86
'FCRLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S245.  Gene #24: 'FCRLA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
FCRLA MUTATED 4 8 2
FCRLA WILD-TYPE 137 174 87
'FCRLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.84

Table S246.  Gene #24: 'FCRLA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
FCRLA MUTATED 1 8 5
FCRLA WILD-TYPE 93 225 80
'ARID2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S247.  Gene #25: 'ARID2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ARID2 MUTATED 3 9 5 7
ARID2 WILD-TYPE 62 201 67 124
'ARID2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S248.  Gene #25: 'ARID2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ARID2 MUTATED 5 6 10
ARID2 WILD-TYPE 126 132 151
'ARID2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S249.  Gene #25: 'ARID2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ARID2 MUTATED 3 5 2
ARID2 WILD-TYPE 39 66 61
'ARID2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S250.  Gene #25: 'ARID2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ARID2 MUTATED 3 2 2 0 3
ARID2 WILD-TYPE 36 30 41 30 29
'ARID2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.78

Table S251.  Gene #25: 'ARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ARID2 MUTATED 6 14 4
ARID2 WILD-TYPE 144 171 139
'ARID2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0912 (Fisher's exact test), Q value = 0.72

Table S252.  Gene #25: 'ARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ARID2 MUTATED 1 5 6 5 0 4 3
ARID2 WILD-TYPE 71 104 84 39 49 42 65
'ARID2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0798 (Fisher's exact test), Q value = 0.68

Table S253.  Gene #25: 'ARID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ARID2 MUTATED 4 15 5
ARID2 WILD-TYPE 171 196 85
'ARID2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.94

Table S254.  Gene #25: 'ARID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ARID2 MUTATED 3 13 3 5
ARID2 WILD-TYPE 67 173 128 84
'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.76

Table S255.  Gene #25: 'ARID2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ARID2 MUTATED 3 9 7
ARID2 WILD-TYPE 138 173 82
'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S256.  Gene #25: 'ARID2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ARID2 MUTATED 3 14 2
ARID2 WILD-TYPE 91 219 83
'SLAMF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0091 (Fisher's exact test), Q value = 0.33

Table S257.  Gene #26: 'SLAMF9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SLAMF9 MUTATED 1 1 2 8
SLAMF9 WILD-TYPE 64 209 70 123

Figure S70.  Get High-res Image Gene #26: 'SLAMF9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLAMF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0403 (Fisher's exact test), Q value = 0.58

Table S258.  Gene #26: 'SLAMF9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SLAMF9 MUTATED 0 6 5
SLAMF9 WILD-TYPE 131 132 156

Figure S71.  Get High-res Image Gene #26: 'SLAMF9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SLAMF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S259.  Gene #26: 'SLAMF9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SLAMF9 MUTATED 1 1 2
SLAMF9 WILD-TYPE 41 70 61
'SLAMF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S260.  Gene #26: 'SLAMF9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SLAMF9 MUTATED 1 0 1 0 2
SLAMF9 WILD-TYPE 38 32 42 30 30
'SLAMF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.84

Table S261.  Gene #26: 'SLAMF9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SLAMF9 MUTATED 1 6 5
SLAMF9 WILD-TYPE 149 179 138
'SLAMF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S262.  Gene #26: 'SLAMF9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SLAMF9 MUTATED 2 4 4 0 1 1 0
SLAMF9 WILD-TYPE 70 105 86 44 48 45 68
'SLAMF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0823 (Fisher's exact test), Q value = 0.68

Table S263.  Gene #26: 'SLAMF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SLAMF9 MUTATED 1 8 3
SLAMF9 WILD-TYPE 174 203 87
'SLAMF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.37

Table S264.  Gene #26: 'SLAMF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SLAMF9 MUTATED 0 9 0 3
SLAMF9 WILD-TYPE 70 177 131 86

Figure S72.  Get High-res Image Gene #26: 'SLAMF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SLAMF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S265.  Gene #26: 'SLAMF9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SLAMF9 MUTATED 4 3 3
SLAMF9 WILD-TYPE 137 179 86
'SLAMF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S266.  Gene #26: 'SLAMF9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SLAMF9 MUTATED 1 7 2
SLAMF9 WILD-TYPE 93 226 83
'SLC4A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S267.  Gene #27: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SLC4A3 MUTATED 2 8 3 5
SLC4A3 WILD-TYPE 63 202 69 126
'SLC4A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S268.  Gene #27: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SLC4A3 MUTATED 3 8 7
SLC4A3 WILD-TYPE 128 130 154
'SLC4A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S269.  Gene #27: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SLC4A3 MUTATED 1 5 3
SLC4A3 WILD-TYPE 41 66 60
'SLC4A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S270.  Gene #27: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SLC4A3 MUTATED 3 2 3 1 0
SLC4A3 WILD-TYPE 36 30 40 29 32
'SLC4A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.77

Table S271.  Gene #27: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SLC4A3 MUTATED 2 10 6
SLC4A3 WILD-TYPE 148 175 137
'SLC4A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S272.  Gene #27: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SLC4A3 MUTATED 0 6 5 1 2 2 2
SLC4A3 WILD-TYPE 72 103 85 43 47 44 66
'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.79

Table S273.  Gene #27: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SLC4A3 MUTATED 5 12 1
SLC4A3 WILD-TYPE 170 199 89
'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S274.  Gene #27: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SLC4A3 MUTATED 3 8 3 4
SLC4A3 WILD-TYPE 67 178 128 85
'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.97

Table S275.  Gene #27: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SLC4A3 MUTATED 3 10 4
SLC4A3 WILD-TYPE 138 172 85
'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00343 (Fisher's exact test), Q value = 0.21

Table S276.  Gene #27: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SLC4A3 MUTATED 1 16 0
SLC4A3 WILD-TYPE 93 217 85

Figure S73.  Get High-res Image Gene #27: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SP100 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S277.  Gene #28: 'SP100 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SP100 MUTATED 1 9 2 4
SP100 WILD-TYPE 64 201 70 127
'SP100 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S278.  Gene #28: 'SP100 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SP100 MUTATED 4 6 5
SP100 WILD-TYPE 127 132 156
'SP100 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S279.  Gene #28: 'SP100 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SP100 MUTATED 1 1 2
SP100 WILD-TYPE 41 70 61
'SP100 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S280.  Gene #28: 'SP100 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SP100 MUTATED 0 1 1 1 1
SP100 WILD-TYPE 39 31 42 29 31
'SP100 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00054 (Fisher's exact test), Q value = 0.067

Table S281.  Gene #28: 'SP100 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SP100 MUTATED 0 13 3
SP100 WILD-TYPE 150 172 140

Figure S74.  Get High-res Image Gene #28: 'SP100 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SP100 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.73

Table S282.  Gene #28: 'SP100 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SP100 MUTATED 0 5 5 2 1 3 0
SP100 WILD-TYPE 72 104 85 42 48 43 68
'SP100 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0438 (Fisher's exact test), Q value = 0.6

Table S283.  Gene #28: 'SP100 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SP100 MUTATED 2 8 6
SP100 WILD-TYPE 173 203 84

Figure S75.  Get High-res Image Gene #28: 'SP100 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SP100 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0893 (Fisher's exact test), Q value = 0.71

Table S284.  Gene #28: 'SP100 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SP100 MUTATED 1 10 1 4
SP100 WILD-TYPE 69 176 130 85
'SP100 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0765 (Fisher's exact test), Q value = 0.67

Table S285.  Gene #28: 'SP100 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SP100 MUTATED 3 5 7
SP100 WILD-TYPE 138 177 82
'SP100 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S286.  Gene #28: 'SP100 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SP100 MUTATED 2 11 2
SP100 WILD-TYPE 92 222 83
'RPL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S287.  Gene #29: 'RPL5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
RPL5 MUTATED 1 4 1 2
RPL5 WILD-TYPE 64 206 71 129
'RPL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S288.  Gene #29: 'RPL5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
RPL5 MUTATED 3 3 2
RPL5 WILD-TYPE 128 135 159
'RPL5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.9

Table S289.  Gene #29: 'RPL5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
RPL5 MUTATED 2 1 0
RPL5 WILD-TYPE 40 70 63
'RPL5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.73

Table S290.  Gene #29: 'RPL5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
RPL5 MUTATED 0 0 0 1 2
RPL5 WILD-TYPE 39 32 43 29 30
'RPL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S291.  Gene #29: 'RPL5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
RPL5 MUTATED 3 2 3
RPL5 WILD-TYPE 147 183 140
'RPL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S292.  Gene #29: 'RPL5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
RPL5 MUTATED 1 1 2 2 0 1 1
RPL5 WILD-TYPE 71 108 88 42 49 45 67
'RPL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S293.  Gene #29: 'RPL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
RPL5 MUTATED 2 3 3
RPL5 WILD-TYPE 173 208 87
'RPL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S294.  Gene #29: 'RPL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
RPL5 MUTATED 0 2 3 3
RPL5 WILD-TYPE 70 184 128 86
'RPL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S295.  Gene #29: 'RPL5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
RPL5 MUTATED 1 5 2
RPL5 WILD-TYPE 140 177 87
'RPL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S296.  Gene #29: 'RPL5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
RPL5 MUTATED 2 5 1
RPL5 WILD-TYPE 92 228 84
'AACS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S297.  Gene #30: 'AACS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
AACS MUTATED 2 7 2 7
AACS WILD-TYPE 63 203 70 124
'AACS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S298.  Gene #30: 'AACS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
AACS MUTATED 6 5 5
AACS WILD-TYPE 125 133 156
'AACS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S299.  Gene #30: 'AACS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
AACS MUTATED 1 2 2
AACS WILD-TYPE 41 69 61
'AACS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 0.97

Table S300.  Gene #30: 'AACS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
AACS MUTATED 0 1 3 1 0
AACS WILD-TYPE 39 31 40 29 32
'AACS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S301.  Gene #30: 'AACS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
AACS MUTATED 3 9 6
AACS WILD-TYPE 147 176 137
'AACS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S302.  Gene #30: 'AACS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
AACS MUTATED 2 6 4 3 1 1 1
AACS WILD-TYPE 70 103 86 41 48 45 67
'AACS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.88

Table S303.  Gene #30: 'AACS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
AACS MUTATED 6 11 1
AACS WILD-TYPE 169 200 89
'AACS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S304.  Gene #30: 'AACS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
AACS MUTATED 3 7 4 4
AACS WILD-TYPE 67 179 127 85
'AACS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S305.  Gene #30: 'AACS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
AACS MUTATED 7 7 2
AACS WILD-TYPE 134 175 87
'AACS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S306.  Gene #30: 'AACS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
AACS MUTATED 3 10 3
AACS WILD-TYPE 91 223 82
'ITGBL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S307.  Gene #31: 'ITGBL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ITGBL1 MUTATED 2 6 5 6
ITGBL1 WILD-TYPE 63 204 67 125
'ITGBL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S308.  Gene #31: 'ITGBL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ITGBL1 MUTATED 3 6 8
ITGBL1 WILD-TYPE 128 132 153
'ITGBL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S309.  Gene #31: 'ITGBL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ITGBL1 MUTATED 1 1 2
ITGBL1 WILD-TYPE 41 70 61
'ITGBL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S310.  Gene #31: 'ITGBL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ITGBL1 MUTATED 0 0 2 1 1
ITGBL1 WILD-TYPE 39 32 41 29 31
'ITGBL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0521 (Fisher's exact test), Q value = 0.62

Table S311.  Gene #31: 'ITGBL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ITGBL1 MUTATED 2 12 5
ITGBL1 WILD-TYPE 148 173 138
'ITGBL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0681 (Fisher's exact test), Q value = 0.65

Table S312.  Gene #31: 'ITGBL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ITGBL1 MUTATED 1 2 8 0 1 3 4
ITGBL1 WILD-TYPE 71 107 82 44 48 43 64
'ITGBL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.41

Table S313.  Gene #31: 'ITGBL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ITGBL1 MUTATED 2 14 3
ITGBL1 WILD-TYPE 173 197 87

Figure S76.  Get High-res Image Gene #31: 'ITGBL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ITGBL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.041 (Fisher's exact test), Q value = 0.58

Table S314.  Gene #31: 'ITGBL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ITGBL1 MUTATED 2 9 1 7
ITGBL1 WILD-TYPE 68 177 130 82

Figure S77.  Get High-res Image Gene #31: 'ITGBL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ITGBL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.79

Table S315.  Gene #31: 'ITGBL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ITGBL1 MUTATED 2 10 4
ITGBL1 WILD-TYPE 139 172 85
'ITGBL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.88

Table S316.  Gene #31: 'ITGBL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ITGBL1 MUTATED 1 12 3
ITGBL1 WILD-TYPE 93 221 82
'NLRP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.77

Table S317.  Gene #32: 'NLRP6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
NLRP6 MUTATED 0 3 4 3
NLRP6 WILD-TYPE 65 207 68 128
'NLRP6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S318.  Gene #32: 'NLRP6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
NLRP6 MUTATED 1 3 5
NLRP6 WILD-TYPE 130 135 156
'NLRP6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S319.  Gene #32: 'NLRP6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
NLRP6 MUTATED 3 3 4
NLRP6 WILD-TYPE 147 182 139
'NLRP6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0188 (Fisher's exact test), Q value = 0.43

Table S320.  Gene #32: 'NLRP6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
NLRP6 MUTATED 1 0 2 0 4 0 3
NLRP6 WILD-TYPE 71 109 88 44 45 46 65

Figure S78.  Get High-res Image Gene #32: 'NLRP6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NLRP6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.78

Table S321.  Gene #32: 'NLRP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
NLRP6 MUTATED 1 7 2
NLRP6 WILD-TYPE 174 204 88
'NLRP6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.078 (Fisher's exact test), Q value = 0.67

Table S322.  Gene #32: 'NLRP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
NLRP6 MUTATED 1 5 0 4
NLRP6 WILD-TYPE 69 181 131 85
'NLRP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S323.  Gene #32: 'NLRP6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
NLRP6 MUTATED 2 4 3
NLRP6 WILD-TYPE 139 178 86
'NLRP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0917 (Fisher's exact test), Q value = 0.72

Table S324.  Gene #32: 'NLRP6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
NLRP6 MUTATED 0 5 4
NLRP6 WILD-TYPE 94 228 81
'STIM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 0.4

Table S325.  Gene #33: 'STIM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
STIM1 MUTATED 0 2 0 7
STIM1 WILD-TYPE 65 208 72 124

Figure S79.  Get High-res Image Gene #33: 'STIM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'STIM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S326.  Gene #33: 'STIM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
STIM1 MUTATED 2 3 3
STIM1 WILD-TYPE 129 135 158
'STIM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S327.  Gene #33: 'STIM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
STIM1 MUTATED 2 5 2
STIM1 WILD-TYPE 148 180 141
'STIM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.93

Table S328.  Gene #33: 'STIM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
STIM1 MUTATED 1 5 3 0 0 0 0
STIM1 WILD-TYPE 71 104 87 44 49 46 68
'STIM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.73

Table S329.  Gene #33: 'STIM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
STIM1 MUTATED 2 7 0
STIM1 WILD-TYPE 173 204 90
'STIM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.84

Table S330.  Gene #33: 'STIM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
STIM1 MUTATED 2 5 0 2
STIM1 WILD-TYPE 68 181 131 87
'STIM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S331.  Gene #33: 'STIM1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
STIM1 MUTATED 1 5 1
STIM1 WILD-TYPE 140 177 88
'STIM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S332.  Gene #33: 'STIM1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
STIM1 MUTATED 1 5 1
STIM1 WILD-TYPE 93 228 84
'NCKAP1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.95

Table S333.  Gene #34: 'NCKAP1L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
NCKAP1L MUTATED 4 6 5 4
NCKAP1L WILD-TYPE 61 204 67 127
'NCKAP1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.9

Table S334.  Gene #34: 'NCKAP1L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
NCKAP1L MUTATED 2 7 7
NCKAP1L WILD-TYPE 129 131 154
'NCKAP1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S335.  Gene #34: 'NCKAP1L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
NCKAP1L MUTATED 2 3 4
NCKAP1L WILD-TYPE 40 68 59
'NCKAP1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.73

Table S336.  Gene #34: 'NCKAP1L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
NCKAP1L MUTATED 1 5 1 1 1
NCKAP1L WILD-TYPE 38 27 42 29 31
'NCKAP1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0441 (Fisher's exact test), Q value = 0.6

Table S337.  Gene #34: 'NCKAP1L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
NCKAP1L MUTATED 2 7 10
NCKAP1L WILD-TYPE 148 178 133

Figure S80.  Get High-res Image Gene #34: 'NCKAP1L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NCKAP1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.86

Table S338.  Gene #34: 'NCKAP1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
NCKAP1L MUTATED 0 3 6 3 3 2 2
NCKAP1L WILD-TYPE 72 106 84 41 46 44 66
'NCKAP1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 0.55

Table S339.  Gene #34: 'NCKAP1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
NCKAP1L MUTATED 4 14 1
NCKAP1L WILD-TYPE 171 197 89

Figure S81.  Get High-res Image Gene #34: 'NCKAP1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NCKAP1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0585 (Fisher's exact test), Q value = 0.62

Table S340.  Gene #34: 'NCKAP1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
NCKAP1L MUTATED 2 7 2 8
NCKAP1L WILD-TYPE 68 179 129 81
'NCKAP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S341.  Gene #34: 'NCKAP1L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
NCKAP1L MUTATED 5 5 5
NCKAP1L WILD-TYPE 136 177 84
'NCKAP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S342.  Gene #34: 'NCKAP1L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
NCKAP1L MUTATED 3 10 2
NCKAP1L WILD-TYPE 91 223 83
'CTNNB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S343.  Gene #35: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CTNNB1 MUTATED 5 8 2 4
CTNNB1 WILD-TYPE 60 202 70 127
'CTNNB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.94

Table S344.  Gene #35: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CTNNB1 MUTATED 2 6 8
CTNNB1 WILD-TYPE 129 132 153
'CTNNB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.97

Table S345.  Gene #35: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
CTNNB1 MUTATED 2 1 4
CTNNB1 WILD-TYPE 40 70 59
'CTNNB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.73

Table S346.  Gene #35: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
CTNNB1 MUTATED 0 4 1 1 1
CTNNB1 WILD-TYPE 39 28 42 29 31
'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.93

Table S347.  Gene #35: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CTNNB1 MUTATED 4 6 9
CTNNB1 WILD-TYPE 146 179 134
'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S348.  Gene #35: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CTNNB1 MUTATED 4 2 5 4 1 1 2
CTNNB1 WILD-TYPE 68 107 85 40 48 45 66
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.5

Table S349.  Gene #35: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CTNNB1 MUTATED 6 13 0
CTNNB1 WILD-TYPE 169 198 90

Figure S82.  Get High-res Image Gene #35: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S350.  Gene #35: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CTNNB1 MUTATED 2 8 4 5
CTNNB1 WILD-TYPE 68 178 127 84
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.92

Table S351.  Gene #35: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CTNNB1 MUTATED 2 8 1
CTNNB1 WILD-TYPE 139 174 88
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S352.  Gene #35: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CTNNB1 MUTATED 3 7 1
CTNNB1 WILD-TYPE 91 226 84
'PLEKHB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 0.57

Table S353.  Gene #36: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PLEKHB2 MUTATED 1 1 4 3
PLEKHB2 WILD-TYPE 64 209 68 128

Figure S83.  Get High-res Image Gene #36: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PLEKHB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S354.  Gene #36: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PLEKHB2 MUTATED 1 3 5
PLEKHB2 WILD-TYPE 130 135 156
'PLEKHB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S355.  Gene #36: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
PLEKHB2 MUTATED 0 2 1
PLEKHB2 WILD-TYPE 42 69 62
'PLEKHB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S356.  Gene #36: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
PLEKHB2 MUTATED 0 0 2 1 0
PLEKHB2 WILD-TYPE 39 32 41 29 32
'PLEKHB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S357.  Gene #36: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PLEKHB2 MUTATED 1 4 4
PLEKHB2 WILD-TYPE 149 181 139
'PLEKHB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S358.  Gene #36: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PLEKHB2 MUTATED 0 4 3 0 1 1 0
PLEKHB2 WILD-TYPE 72 105 87 44 48 45 68
'PLEKHB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.78

Table S359.  Gene #36: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PLEKHB2 MUTATED 1 7 1
PLEKHB2 WILD-TYPE 174 204 89
'PLEKHB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0362 (Fisher's exact test), Q value = 0.56

Table S360.  Gene #36: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PLEKHB2 MUTATED 0 5 0 4
PLEKHB2 WILD-TYPE 70 181 131 85

Figure S84.  Get High-res Image Gene #36: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PLEKHB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S361.  Gene #36: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PLEKHB2 MUTATED 2 5 2
PLEKHB2 WILD-TYPE 139 177 87
'PLEKHB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0277 (Fisher's exact test), Q value = 0.52

Table S362.  Gene #36: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PLEKHB2 MUTATED 0 9 0
PLEKHB2 WILD-TYPE 94 224 85

Figure S85.  Get High-res Image Gene #36: 'PLEKHB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'G3BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.83

Table S363.  Gene #37: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
G3BP1 MUTATED 3 4 0 1
G3BP1 WILD-TYPE 62 206 72 130
'G3BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S364.  Gene #37: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
G3BP1 MUTATED 2 1 1
G3BP1 WILD-TYPE 129 137 160
'G3BP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S365.  Gene #37: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
G3BP1 MUTATED 1 1 2
G3BP1 WILD-TYPE 41 70 61
'G3BP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S366.  Gene #37: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
G3BP1 MUTATED 1 2 1 0 0
G3BP1 WILD-TYPE 38 30 42 30 32
'G3BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S367.  Gene #37: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
G3BP1 MUTATED 2 2 4
G3BP1 WILD-TYPE 148 183 139
'G3BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S368.  Gene #37: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
G3BP1 MUTATED 0 3 2 1 1 0 1
G3BP1 WILD-TYPE 72 106 88 43 48 46 67
'G3BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S369.  Gene #37: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
G3BP1 MUTATED 3 3 2
G3BP1 WILD-TYPE 172 208 88
'G3BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S370.  Gene #37: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
G3BP1 MUTATED 1 2 3 2
G3BP1 WILD-TYPE 69 184 128 87
'G3BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S371.  Gene #37: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
G3BP1 MUTATED 2 1 1
G3BP1 WILD-TYPE 139 181 88
'G3BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S372.  Gene #37: 'G3BP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
G3BP1 MUTATED 0 3 1
G3BP1 WILD-TYPE 94 230 84
'TLR9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S373.  Gene #38: 'TLR9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
TLR9 MUTATED 2 4 2 2
TLR9 WILD-TYPE 63 206 70 129
'TLR9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S374.  Gene #38: 'TLR9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
TLR9 MUTATED 4 3 2
TLR9 WILD-TYPE 127 135 159
'TLR9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.86

Table S375.  Gene #38: 'TLR9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
TLR9 MUTATED 1 4 5
TLR9 WILD-TYPE 149 181 138
'TLR9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.92

Table S376.  Gene #38: 'TLR9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
TLR9 MUTATED 1 0 3 1 2 2 1
TLR9 WILD-TYPE 71 109 87 43 47 44 67
'TLR9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.83

Table S377.  Gene #38: 'TLR9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
TLR9 MUTATED 3 7 0
TLR9 WILD-TYPE 172 204 90
'TLR9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0933 (Fisher's exact test), Q value = 0.72

Table S378.  Gene #38: 'TLR9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
TLR9 MUTATED 0 3 2 5
TLR9 WILD-TYPE 70 183 129 84
'TLR9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.53

Table S379.  Gene #38: 'TLR9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
TLR9 MUTATED 1 8 0
TLR9 WILD-TYPE 140 174 89

Figure S86.  Get High-res Image Gene #38: 'TLR9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TLR9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S380.  Gene #38: 'TLR9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
TLR9 MUTATED 2 6 1
TLR9 WILD-TYPE 92 227 84
'PDE6A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.96

Table S381.  Gene #39: 'PDE6A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PDE6A MUTATED 3 4 4 5
PDE6A WILD-TYPE 62 206 68 126
'PDE6A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S382.  Gene #39: 'PDE6A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PDE6A MUTATED 2 6 4
PDE6A WILD-TYPE 129 132 157
'PDE6A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S383.  Gene #39: 'PDE6A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
PDE6A MUTATED 1 1 1
PDE6A WILD-TYPE 41 70 62
'PDE6A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S384.  Gene #39: 'PDE6A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
PDE6A MUTATED 1 1 0 0 1
PDE6A WILD-TYPE 38 31 43 30 31
'PDE6A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.5

Table S385.  Gene #39: 'PDE6A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PDE6A MUTATED 1 6 9
PDE6A WILD-TYPE 149 179 134

Figure S87.  Get High-res Image Gene #39: 'PDE6A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PDE6A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0259 (Fisher's exact test), Q value = 0.5

Table S386.  Gene #39: 'PDE6A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PDE6A MUTATED 2 1 4 1 5 3 0
PDE6A WILD-TYPE 70 108 86 43 44 43 68

Figure S88.  Get High-res Image Gene #39: 'PDE6A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PDE6A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.43

Table S387.  Gene #39: 'PDE6A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PDE6A MUTATED 1 11 3
PDE6A WILD-TYPE 174 200 87

Figure S89.  Get High-res Image Gene #39: 'PDE6A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PDE6A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0304 (Fisher's exact test), Q value = 0.53

Table S388.  Gene #39: 'PDE6A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PDE6A MUTATED 1 6 1 7
PDE6A WILD-TYPE 69 180 130 82

Figure S90.  Get High-res Image Gene #39: 'PDE6A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PDE6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S389.  Gene #39: 'PDE6A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PDE6A MUTATED 3 7 2
PDE6A WILD-TYPE 138 175 87
'PDE6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S390.  Gene #39: 'PDE6A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PDE6A MUTATED 2 9 1
PDE6A WILD-TYPE 92 224 84
'DUSP22 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S391.  Gene #40: 'DUSP22 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
DUSP22 MUTATED 0 1 1 1
DUSP22 WILD-TYPE 5 6 4 2
'DUSP22 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.93

Table S392.  Gene #40: 'DUSP22 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
DUSP22 MUTATED 2 0 1
DUSP22 WILD-TYPE 5 9 3
'DUSP22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.982 (Fisher's exact test), Q value = 1

Table S393.  Gene #40: 'DUSP22 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
DUSP22 MUTATED 2 7 3 5
DUSP22 WILD-TYPE 63 203 69 126
'DUSP22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S394.  Gene #40: 'DUSP22 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
DUSP22 MUTATED 4 3 8
DUSP22 WILD-TYPE 127 135 153
'DUSP22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S395.  Gene #40: 'DUSP22 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
DUSP22 MUTATED 2 3 4
DUSP22 WILD-TYPE 40 68 59
'DUSP22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S396.  Gene #40: 'DUSP22 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
DUSP22 MUTATED 1 1 2 1 4
DUSP22 WILD-TYPE 38 31 41 29 28
'DUSP22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.51

Table S397.  Gene #40: 'DUSP22 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
DUSP22 MUTATED 3 12 2
DUSP22 WILD-TYPE 147 173 141

Figure S91.  Get High-res Image Gene #40: 'DUSP22 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DUSP22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.88

Table S398.  Gene #40: 'DUSP22 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
DUSP22 MUTATED 1 7 5 1 0 0 3
DUSP22 WILD-TYPE 71 102 85 43 49 46 65
'DUSP22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.73

Table S399.  Gene #40: 'DUSP22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
DUSP22 MUTATED 4 12 1
DUSP22 WILD-TYPE 171 199 89
'DUSP22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S400.  Gene #40: 'DUSP22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
DUSP22 MUTATED 3 7 2 5
DUSP22 WILD-TYPE 67 179 129 84
'DUSP22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S401.  Gene #40: 'DUSP22 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
DUSP22 MUTATED 6 5 3
DUSP22 WILD-TYPE 135 177 86
'DUSP22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S402.  Gene #40: 'DUSP22 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
DUSP22 MUTATED 3 9 2
DUSP22 WILD-TYPE 91 224 83
'MMP19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S403.  Gene #41: 'MMP19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MMP19 MUTATED 1 5 3 1
MMP19 WILD-TYPE 64 205 69 130
'MMP19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S404.  Gene #41: 'MMP19 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MMP19 MUTATED 3 5 2
MMP19 WILD-TYPE 128 133 159
'MMP19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S405.  Gene #41: 'MMP19 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
MMP19 MUTATED 0 1 2
MMP19 WILD-TYPE 42 70 61
'MMP19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S406.  Gene #41: 'MMP19 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
MMP19 MUTATED 0 1 1 0 1
MMP19 WILD-TYPE 39 31 42 30 31
'MMP19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S407.  Gene #41: 'MMP19 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MMP19 MUTATED 3 3 3
MMP19 WILD-TYPE 147 182 140
'MMP19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S408.  Gene #41: 'MMP19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MMP19 MUTATED 1 1 1 0 2 1 3
MMP19 WILD-TYPE 71 108 89 44 47 45 65
'MMP19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S409.  Gene #41: 'MMP19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MMP19 MUTATED 3 4 3
MMP19 WILD-TYPE 172 207 87
'MMP19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S410.  Gene #41: 'MMP19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MMP19 MUTATED 2 2 3 3
MMP19 WILD-TYPE 68 184 128 86
'MMP19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S411.  Gene #41: 'MMP19 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MMP19 MUTATED 3 3 4
MMP19 WILD-TYPE 138 179 85
'MMP19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S412.  Gene #41: 'MMP19 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MMP19 MUTATED 2 6 2
MMP19 WILD-TYPE 92 227 83
'APC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S413.  Gene #42: 'APC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
APC MUTATED 3 8 4 5
APC WILD-TYPE 62 202 68 126
'APC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S414.  Gene #42: 'APC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
APC MUTATED 5 6 4
APC WILD-TYPE 126 132 157
'APC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S415.  Gene #42: 'APC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
APC MUTATED 1 3 3
APC WILD-TYPE 41 68 60
'APC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S416.  Gene #42: 'APC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
APC MUTATED 2 1 2 1 1
APC WILD-TYPE 37 31 41 29 31
'APC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0828 (Fisher's exact test), Q value = 0.68

Table S417.  Gene #42: 'APC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
APC MUTATED 2 11 7
APC WILD-TYPE 148 174 136
'APC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.87

Table S418.  Gene #42: 'APC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
APC MUTATED 1 4 7 2 1 4 1
APC WILD-TYPE 71 105 83 42 48 42 67
'APC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0618 (Fisher's exact test), Q value = 0.63

Table S419.  Gene #42: 'APC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
APC MUTATED 5 14 1
APC WILD-TYPE 170 197 89
'APC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0513 (Fisher's exact test), Q value = 0.62

Table S420.  Gene #42: 'APC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
APC MUTATED 0 11 3 6
APC WILD-TYPE 70 175 128 83
'APC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S421.  Gene #42: 'APC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
APC MUTATED 4 6 4
APC WILD-TYPE 137 176 85
'APC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.93

Table S422.  Gene #42: 'APC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
APC MUTATED 2 11 1
APC WILD-TYPE 92 222 84
'STRA8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00492 (Fisher's exact test), Q value = 0.25

Table S423.  Gene #43: 'STRA8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
STRA8 MUTATED 2 0 4 2
STRA8 WILD-TYPE 63 210 68 129

Figure S92.  Get High-res Image Gene #43: 'STRA8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'STRA8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.077 (Fisher's exact test), Q value = 0.67

Table S424.  Gene #43: 'STRA8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
STRA8 MUTATED 0 4 1
STRA8 WILD-TYPE 131 134 160
'STRA8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.73

Table S425.  Gene #43: 'STRA8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
STRA8 MUTATED 0 5 3
STRA8 WILD-TYPE 150 180 140
'STRA8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0344 (Fisher's exact test), Q value = 0.55

Table S426.  Gene #43: 'STRA8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
STRA8 MUTATED 0 1 4 0 3 0 0
STRA8 WILD-TYPE 72 108 86 44 46 46 68

Figure S93.  Get High-res Image Gene #43: 'STRA8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'STRA8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.37

Table S427.  Gene #43: 'STRA8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
STRA8 MUTATED 0 7 0
STRA8 WILD-TYPE 175 204 90

Figure S94.  Get High-res Image Gene #43: 'STRA8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'STRA8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.73

Table S428.  Gene #43: 'STRA8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
STRA8 MUTATED 0 4 0 3
STRA8 WILD-TYPE 70 182 131 86
'STRA8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S429.  Gene #43: 'STRA8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
STRA8 MUTATED 3 2 0
STRA8 WILD-TYPE 138 180 89
'STRA8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.88

Table S430.  Gene #43: 'STRA8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
STRA8 MUTATED 0 5 0
STRA8 WILD-TYPE 94 228 85
'A2M MUTATION STATUS' versus 'CN_CNMF'

P value = 0.099 (Fisher's exact test), Q value = 0.73

Table S431.  Gene #44: 'A2M MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
A2M MUTATED 3 4 5 8
A2M WILD-TYPE 62 206 67 123
'A2M MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S432.  Gene #44: 'A2M MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
A2M MUTATED 3 6 7
A2M WILD-TYPE 128 132 154
'A2M MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.88

Table S433.  Gene #44: 'A2M MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
A2M MUTATED 0 5 4
A2M WILD-TYPE 42 66 59
'A2M MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S434.  Gene #44: 'A2M MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
A2M MUTATED 3 1 2 2 1
A2M WILD-TYPE 36 31 41 28 31
'A2M MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0511 (Fisher's exact test), Q value = 0.62

Table S435.  Gene #44: 'A2M MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
A2M MUTATED 2 12 6
A2M WILD-TYPE 148 173 137
'A2M MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0524 (Fisher's exact test), Q value = 0.62

Table S436.  Gene #44: 'A2M MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
A2M MUTATED 0 6 6 0 4 3 1
A2M WILD-TYPE 72 103 84 44 45 43 67
'A2M MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00535 (Fisher's exact test), Q value = 0.26

Table S437.  Gene #44: 'A2M MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
A2M MUTATED 1 12 6
A2M WILD-TYPE 174 199 84

Figure S95.  Get High-res Image Gene #44: 'A2M MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'A2M MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.77

Table S438.  Gene #44: 'A2M MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
A2M MUTATED 1 11 2 5
A2M WILD-TYPE 69 175 129 84
'A2M MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.84

Table S439.  Gene #44: 'A2M MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
A2M MUTATED 3 7 6
A2M WILD-TYPE 138 175 83
'A2M MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.77

Table S440.  Gene #44: 'A2M MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
A2M MUTATED 1 13 2
A2M WILD-TYPE 93 220 83
'CD244 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.92

Table S441.  Gene #45: 'CD244 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CD244 MUTATED 0 4 3 5
CD244 WILD-TYPE 65 206 69 126
'CD244 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S442.  Gene #45: 'CD244 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CD244 MUTATED 4 5 3
CD244 WILD-TYPE 127 133 158
'CD244 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S443.  Gene #45: 'CD244 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
CD244 MUTATED 0 1 2
CD244 WILD-TYPE 42 70 61
'CD244 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S444.  Gene #45: 'CD244 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
CD244 MUTATED 1 0 0 1 1
CD244 WILD-TYPE 38 32 43 29 31
'CD244 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S445.  Gene #45: 'CD244 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CD244 MUTATED 2 7 3
CD244 WILD-TYPE 148 178 140
'CD244 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.91

Table S446.  Gene #45: 'CD244 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CD244 MUTATED 0 2 5 1 0 2 2
CD244 WILD-TYPE 72 107 85 43 49 44 66
'CD244 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0754 (Fisher's exact test), Q value = 0.67

Table S447.  Gene #45: 'CD244 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CD244 MUTATED 3 9 0
CD244 WILD-TYPE 172 202 90
'CD244 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.37

Table S448.  Gene #45: 'CD244 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CD244 MUTATED 3 2 1 6
CD244 WILD-TYPE 67 184 130 83

Figure S96.  Get High-res Image Gene #45: 'CD244 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CD244 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S449.  Gene #45: 'CD244 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CD244 MUTATED 4 5 2
CD244 WILD-TYPE 137 177 87
'CD244 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S450.  Gene #45: 'CD244 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CD244 MUTATED 1 8 2
CD244 WILD-TYPE 93 225 83
'SRPX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S451.  Gene #46: 'SRPX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SRPX MUTATED 2 6 4 4
SRPX WILD-TYPE 63 204 68 127
'SRPX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S452.  Gene #46: 'SRPX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SRPX MUTATED 4 5 4
SRPX WILD-TYPE 127 133 157
'SRPX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S453.  Gene #46: 'SRPX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SRPX MUTATED 2 2 5
SRPX WILD-TYPE 40 69 58
'SRPX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0936 (Fisher's exact test), Q value = 0.72

Table S454.  Gene #46: 'SRPX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SRPX MUTATED 0 0 4 2 3
SRPX WILD-TYPE 39 32 39 28 29
'SRPX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S455.  Gene #46: 'SRPX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SRPX MUTATED 6 5 5
SRPX WILD-TYPE 144 180 138
'SRPX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S456.  Gene #46: 'SRPX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SRPX MUTATED 3 5 2 0 3 1 2
SRPX WILD-TYPE 69 104 88 44 46 45 66
'SRPX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.93

Table S457.  Gene #46: 'SRPX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SRPX MUTATED 3 9 4
SRPX WILD-TYPE 172 202 86
'SRPX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S458.  Gene #46: 'SRPX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SRPX MUTATED 2 9 2 3
SRPX WILD-TYPE 68 177 129 86
'SRPX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S459.  Gene #46: 'SRPX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SRPX MUTATED 4 6 2
SRPX WILD-TYPE 137 176 87
'SRPX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 0.97

Table S460.  Gene #46: 'SRPX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SRPX MUTATED 1 7 4
SRPX WILD-TYPE 93 226 81
'GAGE2D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S461.  Gene #47: 'GAGE2D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
GAGE2D MUTATED 0 2 2 1
GAGE2D WILD-TYPE 65 208 70 130
'GAGE2D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S462.  Gene #47: 'GAGE2D MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
GAGE2D MUTATED 0 1 2
GAGE2D WILD-TYPE 131 137 159
'GAGE2D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S463.  Gene #47: 'GAGE2D MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
GAGE2D MUTATED 0 1 2
GAGE2D WILD-TYPE 42 70 61
'GAGE2D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.81

Table S464.  Gene #47: 'GAGE2D MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
GAGE2D MUTATED 1 0 0 2 0
GAGE2D WILD-TYPE 38 32 43 28 32
'GAGE2D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.97

Table S465.  Gene #47: 'GAGE2D MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
GAGE2D MUTATED 0 3 2
GAGE2D WILD-TYPE 150 182 141
'GAGE2D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S466.  Gene #47: 'GAGE2D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
GAGE2D MUTATED 0 2 1 1 0 1 0
GAGE2D WILD-TYPE 72 107 89 43 49 45 68
'GAGE2D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.78

Table S467.  Gene #47: 'GAGE2D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
GAGE2D MUTATED 0 3 2
GAGE2D WILD-TYPE 175 208 88
'GAGE2D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S468.  Gene #47: 'GAGE2D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
GAGE2D MUTATED 0 2 1 2
GAGE2D WILD-TYPE 70 184 130 87
'GAGE2D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S469.  Gene #47: 'GAGE2D MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
GAGE2D MUTATED 1 2 0
GAGE2D WILD-TYPE 140 180 89
'GAGE2D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S470.  Gene #47: 'GAGE2D MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
GAGE2D MUTATED 0 2 1
GAGE2D WILD-TYPE 94 231 84
'ADNP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.83

Table S471.  Gene #48: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ADNP2 MUTATED 1 10 2 11
ADNP2 WILD-TYPE 64 200 70 120
'ADNP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S472.  Gene #48: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ADNP2 MUTATED 7 4 10
ADNP2 WILD-TYPE 124 134 151
'ADNP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S473.  Gene #48: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ADNP2 MUTATED 3 3 4
ADNP2 WILD-TYPE 39 68 59
'ADNP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S474.  Gene #48: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ADNP2 MUTATED 3 1 2 1 3
ADNP2 WILD-TYPE 36 31 41 29 29
'ADNP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S475.  Gene #48: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ADNP2 MUTATED 5 12 7
ADNP2 WILD-TYPE 145 173 136
'ADNP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S476.  Gene #48: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ADNP2 MUTATED 3 7 7 1 1 2 3
ADNP2 WILD-TYPE 69 102 83 43 48 44 65
'ADNP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0451 (Fisher's exact test), Q value = 0.61

Table S477.  Gene #48: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ADNP2 MUTATED 4 16 3
ADNP2 WILD-TYPE 171 195 87

Figure S97.  Get High-res Image Gene #48: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S478.  Gene #48: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ADNP2 MUTATED 3 9 5 6
ADNP2 WILD-TYPE 67 177 126 83
'ADNP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.86

Table S479.  Gene #48: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ADNP2 MUTATED 4 13 3
ADNP2 WILD-TYPE 137 169 86
'ADNP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.99

Table S480.  Gene #48: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ADNP2 MUTATED 2 13 5
ADNP2 WILD-TYPE 92 220 80
'GLDC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S481.  Gene #49: 'GLDC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
GLDC MUTATED 2 8 5 6
GLDC WILD-TYPE 63 202 67 125
'GLDC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.96

Table S482.  Gene #49: 'GLDC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
GLDC MUTATED 3 8 9
GLDC WILD-TYPE 128 130 152
'GLDC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S483.  Gene #49: 'GLDC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
GLDC MUTATED 1 3 3
GLDC WILD-TYPE 41 68 60
'GLDC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S484.  Gene #49: 'GLDC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
GLDC MUTATED 2 2 1 2 0
GLDC WILD-TYPE 37 30 42 28 32
'GLDC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0528 (Fisher's exact test), Q value = 0.62

Table S485.  Gene #49: 'GLDC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
GLDC MUTATED 2 12 7
GLDC WILD-TYPE 148 173 136
'GLDC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S486.  Gene #49: 'GLDC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
GLDC MUTATED 1 7 5 1 3 3 1
GLDC WILD-TYPE 71 102 85 43 46 43 67
'GLDC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0536 (Fisher's exact test), Q value = 0.62

Table S487.  Gene #49: 'GLDC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
GLDC MUTATED 4 15 2
GLDC WILD-TYPE 171 196 88
'GLDC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0282 (Fisher's exact test), Q value = 0.53

Table S488.  Gene #49: 'GLDC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
GLDC MUTATED 3 7 2 9
GLDC WILD-TYPE 67 179 129 80

Figure S98.  Get High-res Image Gene #49: 'GLDC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GLDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S489.  Gene #49: 'GLDC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
GLDC MUTATED 7 6 5
GLDC WILD-TYPE 134 176 84
'GLDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S490.  Gene #49: 'GLDC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
GLDC MUTATED 3 12 3
GLDC WILD-TYPE 91 221 82
'PIK3CA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S491.  Gene #50: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PIK3CA MUTATED 2 15 6 5
PIK3CA WILD-TYPE 63 195 66 126
'PIK3CA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.95

Table S492.  Gene #50: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PIK3CA MUTATED 10 9 6
PIK3CA WILD-TYPE 121 129 155
'PIK3CA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.091 (Fisher's exact test), Q value = 0.72

Table S493.  Gene #50: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
PIK3CA MUTATED 3 2 8
PIK3CA WILD-TYPE 39 69 55
'PIK3CA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.9

Table S494.  Gene #50: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
PIK3CA MUTATED 3 1 1 4 4
PIK3CA WILD-TYPE 36 31 42 26 28
'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.05 (Fisher's exact test), Q value = 0.62

Table S495.  Gene #50: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PIK3CA MUTATED 10 15 3
PIK3CA WILD-TYPE 140 170 140
'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.025 (Fisher's exact test), Q value = 0.5

Table S496.  Gene #50: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PIK3CA MUTATED 6 5 12 1 0 2 2
PIK3CA WILD-TYPE 66 104 78 43 49 44 66

Figure S99.  Get High-res Image Gene #50: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S497.  Gene #50: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PIK3CA MUTATED 9 13 6
PIK3CA WILD-TYPE 166 198 84
'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S498.  Gene #50: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PIK3CA MUTATED 2 10 10 6
PIK3CA WILD-TYPE 68 176 121 83
'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.81

Table S499.  Gene #50: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PIK3CA MUTATED 10 6 7
PIK3CA WILD-TYPE 131 176 82
'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.82

Table S500.  Gene #50: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PIK3CA MUTATED 2 14 7
PIK3CA WILD-TYPE 92 219 78
'MED12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S501.  Gene #51: 'MED12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MED12 MUTATED 5 13 6 13
MED12 WILD-TYPE 60 197 66 118
'MED12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.73

Table S502.  Gene #51: 'MED12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MED12 MUTATED 6 16 12
MED12 WILD-TYPE 125 122 149
'MED12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S503.  Gene #51: 'MED12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
MED12 MUTATED 4 3 5
MED12 WILD-TYPE 38 68 58
'MED12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.96

Table S504.  Gene #51: 'MED12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
MED12 MUTATED 2 2 2 5 1
MED12 WILD-TYPE 37 30 41 25 31
'MED12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0396 (Fisher's exact test), Q value = 0.58

Table S505.  Gene #51: 'MED12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MED12 MUTATED 5 18 14
MED12 WILD-TYPE 145 167 129

Figure S100.  Get High-res Image Gene #51: 'MED12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MED12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.96

Table S506.  Gene #51: 'MED12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MED12 MUTATED 3 7 11 4 3 6 3
MED12 WILD-TYPE 69 102 79 40 46 40 65
'MED12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.57

Table S507.  Gene #51: 'MED12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MED12 MUTATED 9 24 4
MED12 WILD-TYPE 166 187 86

Figure S101.  Get High-res Image Gene #51: 'MED12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MED12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.83

Table S508.  Gene #51: 'MED12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MED12 MUTATED 5 19 5 8
MED12 WILD-TYPE 65 167 126 81
'MED12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.73

Table S509.  Gene #51: 'MED12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MED12 MUTATED 8 20 4
MED12 WILD-TYPE 133 162 85
'MED12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.078 (Fisher's exact test), Q value = 0.67

Table S510.  Gene #51: 'MED12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MED12 MUTATED 3 24 5
MED12 WILD-TYPE 91 209 80
'TRERF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.8

Table S511.  Gene #52: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
TRERF1 MUTATED 2 4 4 8
TRERF1 WILD-TYPE 63 206 68 123
'TRERF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0597 (Fisher's exact test), Q value = 0.62

Table S512.  Gene #52: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
TRERF1 MUTATED 1 8 7
TRERF1 WILD-TYPE 130 130 154
'TRERF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S513.  Gene #52: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
TRERF1 MUTATED 0 3 3
TRERF1 WILD-TYPE 42 68 60
'TRERF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S514.  Gene #52: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
TRERF1 MUTATED 1 0 2 2 1
TRERF1 WILD-TYPE 38 32 41 28 31
'TRERF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 0.36

Table S515.  Gene #52: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
TRERF1 MUTATED 1 12 5
TRERF1 WILD-TYPE 149 173 138

Figure S102.  Get High-res Image Gene #52: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TRERF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.95

Table S516.  Gene #52: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
TRERF1 MUTATED 1 5 5 1 0 4 2
TRERF1 WILD-TYPE 71 104 85 43 49 42 66
'TRERF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0684 (Fisher's exact test), Q value = 0.65

Table S517.  Gene #52: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
TRERF1 MUTATED 3 13 2
TRERF1 WILD-TYPE 172 198 88
'TRERF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.95

Table S518.  Gene #52: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
TRERF1 MUTATED 1 11 3 3
TRERF1 WILD-TYPE 69 175 128 86
'TRERF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S519.  Gene #52: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
TRERF1 MUTATED 4 9 2
TRERF1 WILD-TYPE 137 173 87
'TRERF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.84

Table S520.  Gene #52: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
TRERF1 MUTATED 1 12 2
TRERF1 WILD-TYPE 93 221 83
'DSC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S521.  Gene #53: 'DSC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
DSC2 MUTATED 1 8 4 7
DSC2 WILD-TYPE 64 202 68 124
'DSC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0781 (Fisher's exact test), Q value = 0.67

Table S522.  Gene #53: 'DSC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
DSC2 MUTATED 2 5 11
DSC2 WILD-TYPE 129 133 150
'DSC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00737 (Fisher's exact test), Q value = 0.3

Table S523.  Gene #53: 'DSC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
DSC2 MUTATED 5 0 4
DSC2 WILD-TYPE 37 71 59

Figure S103.  Get High-res Image Gene #53: 'DSC2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DSC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00373 (Fisher's exact test), Q value = 0.22

Table S524.  Gene #53: 'DSC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
DSC2 MUTATED 0 1 0 3 5
DSC2 WILD-TYPE 39 31 43 27 27

Figure S104.  Get High-res Image Gene #53: 'DSC2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'DSC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S525.  Gene #53: 'DSC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
DSC2 MUTATED 5 10 5
DSC2 WILD-TYPE 145 175 138
'DSC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S526.  Gene #53: 'DSC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
DSC2 MUTATED 4 6 4 2 2 1 1
DSC2 WILD-TYPE 68 103 86 42 47 45 67
'DSC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.84

Table S527.  Gene #53: 'DSC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
DSC2 MUTATED 6 7 7
DSC2 WILD-TYPE 169 204 83
'DSC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.97

Table S528.  Gene #53: 'DSC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
DSC2 MUTATED 2 7 4 7
DSC2 WILD-TYPE 68 179 127 82
'DSC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.062 (Fisher's exact test), Q value = 0.63

Table S529.  Gene #53: 'DSC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
DSC2 MUTATED 8 3 6
DSC2 WILD-TYPE 133 179 83
'DSC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.83

Table S530.  Gene #53: 'DSC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
DSC2 MUTATED 1 11 5
DSC2 WILD-TYPE 93 222 80
'BTK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S531.  Gene #54: 'BTK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
BTK MUTATED 3 5 4 4
BTK WILD-TYPE 62 205 68 127
'BTK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S532.  Gene #54: 'BTK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
BTK MUTATED 5 4 3
BTK WILD-TYPE 126 134 158
'BTK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S533.  Gene #54: 'BTK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
BTK MUTATED 0 1 2
BTK WILD-TYPE 42 70 61
'BTK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S534.  Gene #54: 'BTK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
BTK MUTATED 1 1 0 0 1
BTK WILD-TYPE 38 31 43 30 31
'BTK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S535.  Gene #54: 'BTK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
BTK MUTATED 4 6 6
BTK WILD-TYPE 146 179 137
'BTK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.96

Table S536.  Gene #54: 'BTK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
BTK MUTATED 1 3 3 1 4 0 4
BTK WILD-TYPE 71 106 87 43 45 46 64
'BTK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0917 (Fisher's exact test), Q value = 0.72

Table S537.  Gene #54: 'BTK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
BTK MUTATED 6 10 0
BTK WILD-TYPE 169 201 90
'BTK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S538.  Gene #54: 'BTK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
BTK MUTATED 1 5 5 5
BTK WILD-TYPE 69 181 126 84
'BTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S539.  Gene #54: 'BTK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
BTK MUTATED 4 7 1
BTK WILD-TYPE 137 175 88
'BTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S540.  Gene #54: 'BTK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
BTK MUTATED 2 7 3
BTK WILD-TYPE 92 226 82
'KIF18B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.95

Table S541.  Gene #55: 'KIF18B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
KIF18B MUTATED 0 2 0 1
KIF18B WILD-TYPE 5 5 5 2
'KIF18B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S542.  Gene #55: 'KIF18B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
KIF18B MUTATED 0 2 1
KIF18B WILD-TYPE 7 7 3
'KIF18B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0461 (Fisher's exact test), Q value = 0.61

Table S543.  Gene #55: 'KIF18B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
KIF18B MUTATED 2 0 1 1
KIF18B WILD-TYPE 63 210 71 130

Figure S105.  Get High-res Image Gene #55: 'KIF18B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIF18B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S544.  Gene #55: 'KIF18B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
KIF18B MUTATED 0 2 2
KIF18B WILD-TYPE 150 183 141
'KIF18B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S545.  Gene #55: 'KIF18B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
KIF18B MUTATED 0 2 2 0 0 0 0
KIF18B WILD-TYPE 72 107 88 44 49 46 68
'KIF18B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S546.  Gene #55: 'KIF18B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
KIF18B MUTATED 1 2 1
KIF18B WILD-TYPE 174 209 89
'KIF18B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S547.  Gene #55: 'KIF18B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
KIF18B MUTATED 0 1 1 2
KIF18B WILD-TYPE 70 185 130 87
'WDR66 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 0.62

Table S548.  Gene #56: 'WDR66 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
WDR66 MUTATED 3 2 2 7
WDR66 WILD-TYPE 62 208 70 124
'WDR66 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0458 (Fisher's exact test), Q value = 0.61

Table S549.  Gene #56: 'WDR66 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
WDR66 MUTATED 1 8 3
WDR66 WILD-TYPE 130 130 158

Figure S106.  Get High-res Image Gene #56: 'WDR66 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'WDR66 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0294 (Fisher's exact test), Q value = 0.53

Table S550.  Gene #56: 'WDR66 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
WDR66 MUTATED 1 0 5
WDR66 WILD-TYPE 41 71 58

Figure S107.  Get High-res Image Gene #56: 'WDR66 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'WDR66 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.96

Table S551.  Gene #56: 'WDR66 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
WDR66 MUTATED 0 3 1 1 1
WDR66 WILD-TYPE 39 29 42 29 31
'WDR66 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S552.  Gene #56: 'WDR66 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
WDR66 MUTATED 4 4 6
WDR66 WILD-TYPE 146 181 137
'WDR66 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S553.  Gene #56: 'WDR66 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
WDR66 MUTATED 2 1 4 0 2 2 3
WDR66 WILD-TYPE 70 108 86 44 47 44 65
'WDR66 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.8

Table S554.  Gene #56: 'WDR66 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
WDR66 MUTATED 3 10 1
WDR66 WILD-TYPE 172 201 89
'WDR66 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S555.  Gene #56: 'WDR66 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
WDR66 MUTATED 1 8 2 3
WDR66 WILD-TYPE 69 178 129 86
'WDR66 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.76

Table S556.  Gene #56: 'WDR66 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
WDR66 MUTATED 4 8 0
WDR66 WILD-TYPE 137 174 89
'WDR66 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.8

Table S557.  Gene #56: 'WDR66 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
WDR66 MUTATED 4 8 0
WDR66 WILD-TYPE 90 225 85
'PTEN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S558.  Gene #57: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PTEN MUTATED 1 4 0 2
PTEN WILD-TYPE 64 206 72 129
'PTEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S559.  Gene #57: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PTEN MUTATED 1 2 3
PTEN WILD-TYPE 130 136 158
'PTEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0579 (Fisher's exact test), Q value = 0.62

Table S560.  Gene #57: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
PTEN MUTATED 0 0 3
PTEN WILD-TYPE 42 71 60
'PTEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S561.  Gene #57: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
PTEN MUTATED 0 0 1 1 1
PTEN WILD-TYPE 39 32 42 29 31
'PTEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0341 (Fisher's exact test), Q value = 0.55

Table S562.  Gene #57: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PTEN MUTATED 1 6 0
PTEN WILD-TYPE 149 179 143

Figure S108.  Get High-res Image Gene #57: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PTEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.79

Table S563.  Gene #57: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PTEN MUTATED 0 5 2 0 0 0 0
PTEN WILD-TYPE 72 104 88 44 49 46 68
'PTEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.93

Table S564.  Gene #57: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PTEN MUTATED 2 2 3
PTEN WILD-TYPE 173 209 87
'PTEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S565.  Gene #57: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PTEN MUTATED 1 4 1 1
PTEN WILD-TYPE 69 182 130 88
'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S566.  Gene #57: 'PTEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PTEN MUTATED 1 3 2
PTEN WILD-TYPE 140 179 87
'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S567.  Gene #57: 'PTEN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PTEN MUTATED 1 3 2
PTEN WILD-TYPE 93 230 83
'LTBP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S568.  Gene #58: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
LTBP1 MUTATED 2 1 1 1
LTBP1 WILD-TYPE 3 6 4 2
'LTBP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.94

Table S569.  Gene #58: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
LTBP1 MUTATED 2 1 2
LTBP1 WILD-TYPE 5 8 2
'LTBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0836 (Fisher's exact test), Q value = 0.68

Table S570.  Gene #58: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
LTBP1 MUTATED 11 14 6 15
LTBP1 WILD-TYPE 54 196 66 116
'LTBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S571.  Gene #58: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
LTBP1 MUTATED 9 13 18
LTBP1 WILD-TYPE 122 125 143
'LTBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S572.  Gene #58: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
LTBP1 MUTATED 2 7 8
LTBP1 WILD-TYPE 40 64 55
'LTBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.95

Table S573.  Gene #58: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
LTBP1 MUTATED 2 1 6 5 3
LTBP1 WILD-TYPE 37 31 37 25 29
'LTBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0333 (Fisher's exact test), Q value = 0.54

Table S574.  Gene #58: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
LTBP1 MUTATED 7 23 16
LTBP1 WILD-TYPE 143 162 127

Figure S109.  Get High-res Image Gene #58: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LTBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.83

Table S575.  Gene #58: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
LTBP1 MUTATED 3 14 12 2 7 4 4
LTBP1 WILD-TYPE 69 95 78 42 42 42 64
'LTBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00277 (Fisher's exact test), Q value = 0.19

Table S576.  Gene #58: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
LTBP1 MUTATED 8 31 7
LTBP1 WILD-TYPE 167 180 83

Figure S110.  Get High-res Image Gene #58: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LTBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00388 (Fisher's exact test), Q value = 0.23

Table S577.  Gene #58: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
LTBP1 MUTATED 4 19 6 17
LTBP1 WILD-TYPE 66 167 125 72

Figure S111.  Get High-res Image Gene #58: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LTBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S578.  Gene #58: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
LTBP1 MUTATED 10 20 7
LTBP1 WILD-TYPE 131 162 82
'LTBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00045 (Fisher's exact test), Q value = 0.061

Table S579.  Gene #58: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
LTBP1 MUTATED 1 31 5
LTBP1 WILD-TYPE 93 202 80

Figure S112.  Get High-res Image Gene #58: 'LTBP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C10ORF71 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.95

Table S580.  Gene #59: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
C10ORF71 MUTATED 1 5 4 7
C10ORF71 WILD-TYPE 64 205 68 124
'C10ORF71 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0644 (Fisher's exact test), Q value = 0.64

Table S581.  Gene #59: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
C10ORF71 MUTATED 1 6 9
C10ORF71 WILD-TYPE 130 132 152
'C10ORF71 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.89

Table S582.  Gene #59: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
C10ORF71 MUTATED 3 10 4
C10ORF71 WILD-TYPE 147 175 139
'C10ORF71 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S583.  Gene #59: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
C10ORF71 MUTATED 2 4 4 1 2 3 1
C10ORF71 WILD-TYPE 70 105 86 43 47 43 67
'C10ORF71 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00297 (Fisher's exact test), Q value = 0.19

Table S584.  Gene #59: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
C10ORF71 MUTATED 1 14 2
C10ORF71 WILD-TYPE 174 197 88

Figure S113.  Get High-res Image Gene #59: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'C10ORF71 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.8

Table S585.  Gene #59: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
C10ORF71 MUTATED 0 10 3 4
C10ORF71 WILD-TYPE 70 176 128 85
'C10ORF71 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.9

Table S586.  Gene #59: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
C10ORF71 MUTATED 3 10 2
C10ORF71 WILD-TYPE 138 172 87
'C10ORF71 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0766 (Fisher's exact test), Q value = 0.67

Table S587.  Gene #59: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
C10ORF71 MUTATED 1 13 1
C10ORF71 WILD-TYPE 93 220 84
'KLHL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 1

Table S588.  Gene #60: 'KLHL5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
KLHL5 MUTATED 0 6 3 5
KLHL5 WILD-TYPE 65 204 69 126
'KLHL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S589.  Gene #60: 'KLHL5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
KLHL5 MUTATED 3 4 5
KLHL5 WILD-TYPE 128 134 156
'KLHL5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.37

Table S590.  Gene #60: 'KLHL5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
KLHL5 MUTATED 3 0 0
KLHL5 WILD-TYPE 39 71 63

Figure S114.  Get High-res Image Gene #60: 'KLHL5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'KLHL5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S591.  Gene #60: 'KLHL5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
KLHL5 MUTATED 0 1 0 1 1
KLHL5 WILD-TYPE 39 31 43 29 31
'KLHL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S592.  Gene #60: 'KLHL5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
KLHL5 MUTATED 6 6 2
KLHL5 WILD-TYPE 144 179 141
'KLHL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S593.  Gene #60: 'KLHL5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
KLHL5 MUTATED 1 4 3 1 0 2 3
KLHL5 WILD-TYPE 71 105 87 43 49 44 65
'KLHL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S594.  Gene #60: 'KLHL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
KLHL5 MUTATED 5 7 2
KLHL5 WILD-TYPE 170 204 88
'KLHL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S595.  Gene #60: 'KLHL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
KLHL5 MUTATED 1 5 6 2
KLHL5 WILD-TYPE 69 181 125 87
'KLHL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S596.  Gene #60: 'KLHL5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
KLHL5 MUTATED 4 6 1
KLHL5 WILD-TYPE 137 176 88
'KLHL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S597.  Gene #60: 'KLHL5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
KLHL5 MUTATED 3 7 1
KLHL5 WILD-TYPE 91 226 84
'FAM65C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S598.  Gene #61: 'FAM65C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
FAM65C MUTATED 1 8 3 2
FAM65C WILD-TYPE 64 202 69 129
'FAM65C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S599.  Gene #61: 'FAM65C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
FAM65C MUTATED 3 4 6
FAM65C WILD-TYPE 128 134 155
'FAM65C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.76

Table S600.  Gene #61: 'FAM65C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
FAM65C MUTATED 1 0 3
FAM65C WILD-TYPE 41 71 60
'FAM65C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0722 (Fisher's exact test), Q value = 0.65

Table S601.  Gene #61: 'FAM65C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
FAM65C MUTATED 0 2 0 2 0
FAM65C WILD-TYPE 39 30 43 28 32
'FAM65C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S602.  Gene #61: 'FAM65C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
FAM65C MUTATED 5 5 4
FAM65C WILD-TYPE 145 180 139
'FAM65C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S603.  Gene #61: 'FAM65C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
FAM65C MUTATED 2 5 3 1 1 2 0
FAM65C WILD-TYPE 70 104 87 43 48 44 68
'FAM65C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.73

Table S604.  Gene #61: 'FAM65C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
FAM65C MUTATED 2 10 2
FAM65C WILD-TYPE 173 201 88
'FAM65C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S605.  Gene #61: 'FAM65C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
FAM65C MUTATED 1 7 2 4
FAM65C WILD-TYPE 69 179 129 85
'FAM65C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S606.  Gene #61: 'FAM65C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
FAM65C MUTATED 4 4 3
FAM65C WILD-TYPE 137 178 86
'FAM65C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.77

Table S607.  Gene #61: 'FAM65C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
FAM65C MUTATED 0 9 2
FAM65C WILD-TYPE 94 224 83
'KRTAP5-10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S608.  Gene #62: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
KRTAP5-10 MUTATED 1 4 4 3
KRTAP5-10 WILD-TYPE 64 206 68 128
'KRTAP5-10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.82

Table S609.  Gene #62: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
KRTAP5-10 MUTATED 1 6 4
KRTAP5-10 WILD-TYPE 130 132 157
'KRTAP5-10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S610.  Gene #62: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
KRTAP5-10 MUTATED 3 4 5
KRTAP5-10 WILD-TYPE 147 181 138
'KRTAP5-10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S611.  Gene #62: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
KRTAP5-10 MUTATED 1 3 2 1 2 2 1
KRTAP5-10 WILD-TYPE 71 106 88 43 47 44 67
'KRTAP5-10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S612.  Gene #62: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
KRTAP5-10 MUTATED 4 7 1
KRTAP5-10 WILD-TYPE 171 204 89
'KRTAP5-10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S613.  Gene #62: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
KRTAP5-10 MUTATED 2 6 2 2
KRTAP5-10 WILD-TYPE 68 180 129 87
'KRTAP5-10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.73

Table S614.  Gene #62: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
KRTAP5-10 MUTATED 1 8 2
KRTAP5-10 WILD-TYPE 140 174 87
'KRTAP5-10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S615.  Gene #62: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
KRTAP5-10 MUTATED 2 8 1
KRTAP5-10 WILD-TYPE 92 225 84
'PAK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.99

Table S616.  Gene #63: 'PAK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PAK1 MUTATED 0 6 2 1
PAK1 WILD-TYPE 65 204 70 130
'PAK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S617.  Gene #63: 'PAK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PAK1 MUTATED 3 4 2
PAK1 WILD-TYPE 128 134 159
'PAK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.35

Table S618.  Gene #63: 'PAK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
PAK1 MUTATED 4 0 1
PAK1 WILD-TYPE 38 71 62

Figure S115.  Get High-res Image Gene #63: 'PAK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PAK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.82

Table S619.  Gene #63: 'PAK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
PAK1 MUTATED 0 2 0 1 2
PAK1 WILD-TYPE 39 30 43 29 30
'PAK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.95

Table S620.  Gene #63: 'PAK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PAK1 MUTATED 2 2 5
PAK1 WILD-TYPE 148 183 138
'PAK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.91

Table S621.  Gene #63: 'PAK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PAK1 MUTATED 1 0 2 2 1 2 1
PAK1 WILD-TYPE 71 109 88 42 48 44 67
'PAK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S622.  Gene #63: 'PAK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PAK1 MUTATED 4 4 1
PAK1 WILD-TYPE 171 207 89
'PAK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S623.  Gene #63: 'PAK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PAK1 MUTATED 2 3 2 2
PAK1 WILD-TYPE 68 183 129 87
'PAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S624.  Gene #63: 'PAK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PAK1 MUTATED 3 4 2
PAK1 WILD-TYPE 138 178 87
'PAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S625.  Gene #63: 'PAK1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PAK1 MUTATED 2 5 2
PAK1 WILD-TYPE 92 228 83
'ABCC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S626.  Gene #64: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ABCC4 MUTATED 4 7 3 5
ABCC4 WILD-TYPE 61 203 69 126
'ABCC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S627.  Gene #64: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ABCC4 MUTATED 2 5 7
ABCC4 WILD-TYPE 129 133 154
'ABCC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S628.  Gene #64: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ABCC4 MUTATED 1 2 2
ABCC4 WILD-TYPE 41 69 61
'ABCC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S629.  Gene #64: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ABCC4 MUTATED 1 2 1 0 1
ABCC4 WILD-TYPE 38 30 42 30 31
'ABCC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S630.  Gene #64: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ABCC4 MUTATED 5 8 6
ABCC4 WILD-TYPE 145 177 137
'ABCC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S631.  Gene #64: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ABCC4 MUTATED 2 7 5 2 1 1 1
ABCC4 WILD-TYPE 70 102 85 42 48 45 67
'ABCC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S632.  Gene #64: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ABCC4 MUTATED 5 10 3
ABCC4 WILD-TYPE 170 201 87
'ABCC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S633.  Gene #64: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ABCC4 MUTATED 3 6 3 6
ABCC4 WILD-TYPE 67 180 128 83
'ABCC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S634.  Gene #64: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ABCC4 MUTATED 3 5 3
ABCC4 WILD-TYPE 138 177 86
'ABCC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S635.  Gene #64: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ABCC4 MUTATED 3 6 2
ABCC4 WILD-TYPE 91 227 83
'HERC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.97

Table S636.  Gene #65: 'HERC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
HERC4 MUTATED 2 3 2 6
HERC4 WILD-TYPE 63 207 70 125
'HERC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S637.  Gene #65: 'HERC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
HERC4 MUTATED 3 3 5
HERC4 WILD-TYPE 128 135 156
'HERC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S638.  Gene #65: 'HERC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
HERC4 MUTATED 1 3 2
HERC4 WILD-TYPE 41 68 61
'HERC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S639.  Gene #65: 'HERC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
HERC4 MUTATED 2 0 2 0 2
HERC4 WILD-TYPE 37 32 41 30 30
'HERC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0552 (Fisher's exact test), Q value = 0.62

Table S640.  Gene #65: 'HERC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
HERC4 MUTATED 1 9 3
HERC4 WILD-TYPE 149 176 140
'HERC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S641.  Gene #65: 'HERC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
HERC4 MUTATED 1 4 5 1 1 0 1
HERC4 WILD-TYPE 71 105 85 43 48 46 67
'HERC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S642.  Gene #65: 'HERC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
HERC4 MUTATED 5 7 1
HERC4 WILD-TYPE 170 204 89
'HERC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S643.  Gene #65: 'HERC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
HERC4 MUTATED 2 4 3 4
HERC4 WILD-TYPE 68 182 128 85
'HERC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.97

Table S644.  Gene #65: 'HERC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
HERC4 MUTATED 2 5 4
HERC4 WILD-TYPE 139 177 85
'HERC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.77

Table S645.  Gene #65: 'HERC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
HERC4 MUTATED 0 9 2
HERC4 WILD-TYPE 94 224 83
'DMRTB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.88

Table S646.  Gene #66: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
DMRTB1 MUTATED 2 2 1 5
DMRTB1 WILD-TYPE 63 208 71 126
'DMRTB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S647.  Gene #66: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
DMRTB1 MUTATED 1 3 5
DMRTB1 WILD-TYPE 130 135 156
'DMRTB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.97

Table S648.  Gene #66: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
DMRTB1 MUTATED 1 0 2
DMRTB1 WILD-TYPE 41 71 61
'DMRTB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0713 (Fisher's exact test), Q value = 0.65

Table S649.  Gene #66: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
DMRTB1 MUTATED 0 0 0 2 1
DMRTB1 WILD-TYPE 39 32 43 28 31
'DMRTB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.82

Table S650.  Gene #66: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
DMRTB1 MUTATED 2 7 1
DMRTB1 WILD-TYPE 148 178 142
'DMRTB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S651.  Gene #66: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
DMRTB1 MUTATED 1 4 4 0 1 0 0
DMRTB1 WILD-TYPE 71 105 86 44 48 46 68
'DMRTB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.79

Table S652.  Gene #66: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
DMRTB1 MUTATED 1 6 3
DMRTB1 WILD-TYPE 174 205 87
'DMRTB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.86

Table S653.  Gene #66: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
DMRTB1 MUTATED 0 6 1 3
DMRTB1 WILD-TYPE 70 180 130 86
'DMRTB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.96

Table S654.  Gene #66: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
DMRTB1 MUTATED 1 5 3
DMRTB1 WILD-TYPE 140 177 86
'DMRTB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.73

Table S655.  Gene #66: 'DMRTB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
DMRTB1 MUTATED 0 8 1
DMRTB1 WILD-TYPE 94 225 84
'C5AR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S656.  Gene #67: 'C5AR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
C5AR1 MUTATED 0 2 1 3
C5AR1 WILD-TYPE 65 208 71 128
'C5AR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.95

Table S657.  Gene #67: 'C5AR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
C5AR1 MUTATED 0 3 3
C5AR1 WILD-TYPE 131 135 158
'C5AR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S658.  Gene #67: 'C5AR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
C5AR1 MUTATED 1 1 1
C5AR1 WILD-TYPE 41 70 62
'C5AR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0154 (Fisher's exact test), Q value = 0.4

Table S659.  Gene #67: 'C5AR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
C5AR1 MUTATED 0 0 0 0 3
C5AR1 WILD-TYPE 39 32 43 30 29

Figure S116.  Get High-res Image Gene #67: 'C5AR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'C5AR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.88

Table S660.  Gene #67: 'C5AR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
C5AR1 MUTATED 0 3 3
C5AR1 WILD-TYPE 150 182 140
'C5AR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S661.  Gene #67: 'C5AR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
C5AR1 MUTATED 0 3 1 0 1 1 0
C5AR1 WILD-TYPE 72 106 89 44 48 45 68
'C5AR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.73

Table S662.  Gene #67: 'C5AR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
C5AR1 MUTATED 0 4 2
C5AR1 WILD-TYPE 175 207 88
'C5AR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.84

Table S663.  Gene #67: 'C5AR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
C5AR1 MUTATED 0 4 0 2
C5AR1 WILD-TYPE 70 182 131 87
'C5AR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S664.  Gene #67: 'C5AR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
C5AR1 MUTATED 2 3 1
C5AR1 WILD-TYPE 139 179 88
'C5AR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.73

Table S665.  Gene #67: 'C5AR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
C5AR1 MUTATED 0 3 3
C5AR1 WILD-TYPE 94 230 82
'SLC26A10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S666.  Gene #68: 'SLC26A10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SLC26A10 MUTATED 2 4 3 5
SLC26A10 WILD-TYPE 63 206 69 126
'SLC26A10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S667.  Gene #68: 'SLC26A10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SLC26A10 MUTATED 3 6 5
SLC26A10 WILD-TYPE 128 132 156
'SLC26A10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0581 (Fisher's exact test), Q value = 0.62

Table S668.  Gene #68: 'SLC26A10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SLC26A10 MUTATED 0 0 3
SLC26A10 WILD-TYPE 42 71 60
'SLC26A10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.07 (Fisher's exact test), Q value = 0.65

Table S669.  Gene #68: 'SLC26A10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SLC26A10 MUTATED 0 0 0 2 1
SLC26A10 WILD-TYPE 39 32 43 28 31
'SLC26A10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S670.  Gene #68: 'SLC26A10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SLC26A10 MUTATED 4 5 5
SLC26A10 WILD-TYPE 146 180 138
'SLC26A10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S671.  Gene #68: 'SLC26A10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SLC26A10 MUTATED 0 3 3 1 2 2 3
SLC26A10 WILD-TYPE 72 106 87 43 47 44 65
'SLC26A10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.83

Table S672.  Gene #68: 'SLC26A10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SLC26A10 MUTATED 2 8 4
SLC26A10 WILD-TYPE 173 203 86
'SLC26A10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S673.  Gene #68: 'SLC26A10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SLC26A10 MUTATED 2 5 2 5
SLC26A10 WILD-TYPE 68 181 129 84
'SLC26A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.73

Table S674.  Gene #68: 'SLC26A10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SLC26A10 MUTATED 2 6 6
SLC26A10 WILD-TYPE 139 176 83
'SLC26A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.91

Table S675.  Gene #68: 'SLC26A10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SLC26A10 MUTATED 1 11 2
SLC26A10 WILD-TYPE 93 222 83
'PTGIS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.97

Table S676.  Gene #69: 'PTGIS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PTGIS MUTATED 2 5 3 1
PTGIS WILD-TYPE 63 205 69 130
'PTGIS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.93

Table S677.  Gene #69: 'PTGIS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PTGIS MUTATED 1 5 3
PTGIS WILD-TYPE 130 133 158
'PTGIS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00081 (Fisher's exact test), Q value = 0.083

Table S678.  Gene #69: 'PTGIS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PTGIS MUTATED 0 10 1
PTGIS WILD-TYPE 150 175 142

Figure S117.  Get High-res Image Gene #69: 'PTGIS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PTGIS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S679.  Gene #69: 'PTGIS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PTGIS MUTATED 0 4 3 1 0 2 1
PTGIS WILD-TYPE 72 105 87 43 49 44 67
'PTGIS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0683 (Fisher's exact test), Q value = 0.65

Table S680.  Gene #69: 'PTGIS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PTGIS MUTATED 2 8 0
PTGIS WILD-TYPE 173 203 90
'PTGIS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.77

Table S681.  Gene #69: 'PTGIS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PTGIS MUTATED 2 5 0 3
PTGIS WILD-TYPE 68 181 131 86
'PTGIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S682.  Gene #69: 'PTGIS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PTGIS MUTATED 3 4 1
PTGIS WILD-TYPE 138 178 88
'PTGIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S683.  Gene #69: 'PTGIS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PTGIS MUTATED 1 6 1
PTGIS WILD-TYPE 93 227 84
'DLX5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S684.  Gene #70: 'DLX5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
DLX5 MUTATED 2 5 1 5
DLX5 WILD-TYPE 63 205 71 126
'DLX5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S685.  Gene #70: 'DLX5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
DLX5 MUTATED 4 4 4
DLX5 WILD-TYPE 127 134 157
'DLX5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S686.  Gene #70: 'DLX5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
DLX5 MUTATED 0 3 1
DLX5 WILD-TYPE 42 68 62
'DLX5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.9

Table S687.  Gene #70: 'DLX5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
DLX5 MUTATED 1 0 3 0 0
DLX5 WILD-TYPE 38 32 40 30 32
'DLX5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.99

Table S688.  Gene #70: 'DLX5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
DLX5 MUTATED 2 7 4
DLX5 WILD-TYPE 148 178 139
'DLX5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S689.  Gene #70: 'DLX5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
DLX5 MUTATED 1 3 4 0 2 2 1
DLX5 WILD-TYPE 71 106 86 44 47 44 67
'DLX5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00432 (Fisher's exact test), Q value = 0.24

Table S690.  Gene #70: 'DLX5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
DLX5 MUTATED 0 10 3
DLX5 WILD-TYPE 175 201 87

Figure S118.  Get High-res Image Gene #70: 'DLX5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DLX5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.78

Table S691.  Gene #70: 'DLX5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
DLX5 MUTATED 0 6 2 5
DLX5 WILD-TYPE 70 180 129 84
'DLX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.79

Table S692.  Gene #70: 'DLX5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
DLX5 MUTATED 2 9 1
DLX5 WILD-TYPE 139 173 88
'DLX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.91

Table S693.  Gene #70: 'DLX5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
DLX5 MUTATED 1 10 1
DLX5 WILD-TYPE 93 223 84
'GPATCH4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.064 (Fisher's exact test), Q value = 0.64

Table S694.  Gene #71: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
GPATCH4 MUTATED 0 2 4 2
GPATCH4 WILD-TYPE 65 208 68 129
'GPATCH4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.83

Table S695.  Gene #71: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
GPATCH4 MUTATED 0 4 3
GPATCH4 WILD-TYPE 131 134 158
'GPATCH4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.99

Table S696.  Gene #71: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
GPATCH4 MUTATED 1 5 2
GPATCH4 WILD-TYPE 149 180 141
'GPATCH4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S697.  Gene #71: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
GPATCH4 MUTATED 0 2 3 0 0 2 1
GPATCH4 WILD-TYPE 72 107 87 44 49 44 67
'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0285 (Fisher's exact test), Q value = 0.53

Table S698.  Gene #71: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
GPATCH4 MUTATED 0 7 1
GPATCH4 WILD-TYPE 175 204 89

Figure S119.  Get High-res Image Gene #71: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0318 (Fisher's exact test), Q value = 0.54

Table S699.  Gene #71: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
GPATCH4 MUTATED 0 2 1 5
GPATCH4 WILD-TYPE 70 184 130 84

Figure S120.  Get High-res Image Gene #71: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.97

Table S700.  Gene #71: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
GPATCH4 MUTATED 1 3 3
GPATCH4 WILD-TYPE 140 179 86
'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S701.  Gene #71: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
GPATCH4 MUTATED 1 6 0
GPATCH4 WILD-TYPE 93 227 85
'NR4A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S702.  Gene #72: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
NR4A2 MUTATED 2 10 1 4
NR4A2 WILD-TYPE 63 200 71 127
'NR4A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S703.  Gene #72: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
NR4A2 MUTATED 5 3 8
NR4A2 WILD-TYPE 126 135 153
'NR4A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S704.  Gene #72: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
NR4A2 MUTATED 1 1 1
NR4A2 WILD-TYPE 41 70 62
'NR4A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0713 (Fisher's exact test), Q value = 0.65

Table S705.  Gene #72: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
NR4A2 MUTATED 0 0 0 2 1
NR4A2 WILD-TYPE 39 32 43 28 31
'NR4A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00944 (Fisher's exact test), Q value = 0.33

Table S706.  Gene #72: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
NR4A2 MUTATED 2 13 2
NR4A2 WILD-TYPE 148 172 141

Figure S121.  Get High-res Image Gene #72: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NR4A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0997 (Fisher's exact test), Q value = 0.73

Table S707.  Gene #72: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
NR4A2 MUTATED 0 9 4 1 1 1 1
NR4A2 WILD-TYPE 72 100 86 43 48 45 67
'NR4A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.99

Table S708.  Gene #72: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
NR4A2 MUTATED 4 8 5
NR4A2 WILD-TYPE 171 203 85
'NR4A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.76

Table S709.  Gene #72: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
NR4A2 MUTATED 2 10 1 4
NR4A2 WILD-TYPE 68 176 130 85
'NR4A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.93

Table S710.  Gene #72: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
NR4A2 MUTATED 5 5 6
NR4A2 WILD-TYPE 136 177 83
'NR4A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.88

Table S711.  Gene #72: 'NR4A2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
NR4A2 MUTATED 1 12 3
NR4A2 WILD-TYPE 93 221 82
'ABHD12B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.87

Table S712.  Gene #73: 'ABHD12B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ABHD12B MUTATED 2 1 1 3
ABHD12B WILD-TYPE 63 209 71 128
'ABHD12B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.88

Table S713.  Gene #73: 'ABHD12B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ABHD12B MUTATED 0 2 4
ABHD12B WILD-TYPE 131 136 157
'ABHD12B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S714.  Gene #73: 'ABHD12B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ABHD12B MUTATED 1 1 1
ABHD12B WILD-TYPE 41 70 62
'ABHD12B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.95

Table S715.  Gene #73: 'ABHD12B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ABHD12B MUTATED 2 0 0 1 0
ABHD12B WILD-TYPE 37 32 43 29 32
'ABHD12B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S716.  Gene #73: 'ABHD12B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ABHD12B MUTATED 2 3 2
ABHD12B WILD-TYPE 148 182 141
'ABHD12B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S717.  Gene #73: 'ABHD12B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ABHD12B MUTATED 1 1 2 1 1 1 0
ABHD12B WILD-TYPE 71 108 88 43 48 45 68
'ABHD12B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0821 (Fisher's exact test), Q value = 0.68

Table S718.  Gene #73: 'ABHD12B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ABHD12B MUTATED 0 5 2
ABHD12B WILD-TYPE 175 206 88
'ABHD12B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S719.  Gene #73: 'ABHD12B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ABHD12B MUTATED 0 3 2 2
ABHD12B WILD-TYPE 70 183 129 87
'ABHD12B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S720.  Gene #73: 'ABHD12B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ABHD12B MUTATED 2 2 2
ABHD12B WILD-TYPE 139 180 87
'ABHD12B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S721.  Gene #73: 'ABHD12B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ABHD12B MUTATED 0 4 2
ABHD12B WILD-TYPE 94 229 83
'FNDC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S722.  Gene #74: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
FNDC7 MUTATED 0 7 1 2
FNDC7 WILD-TYPE 65 203 71 129
'FNDC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.99

Table S723.  Gene #74: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
FNDC7 MUTATED 1 2 5
FNDC7 WILD-TYPE 130 136 156
'FNDC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S724.  Gene #74: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
FNDC7 MUTATED 3 5 2
FNDC7 WILD-TYPE 147 180 141
'FNDC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.93

Table S725.  Gene #74: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
FNDC7 MUTATED 1 4 1 3 0 0 1
FNDC7 WILD-TYPE 71 105 89 41 49 46 67
'FNDC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S726.  Gene #74: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
FNDC7 MUTATED 3 3 3
FNDC7 WILD-TYPE 172 208 87
'FNDC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S727.  Gene #74: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
FNDC7 MUTATED 1 5 2 1
FNDC7 WILD-TYPE 69 181 129 88
'FNDC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S728.  Gene #74: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
FNDC7 MUTATED 1 5 1
FNDC7 WILD-TYPE 140 177 88
'FNDC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S729.  Gene #74: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
FNDC7 MUTATED 3 3 1
FNDC7 WILD-TYPE 91 230 84
'RIT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.54

Table S730.  Gene #75: 'RIT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
RIT1 MUTATED 1 3 4 0
RIT1 WILD-TYPE 64 207 68 131

Figure S122.  Get High-res Image Gene #75: 'RIT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RIT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S731.  Gene #75: 'RIT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
RIT1 MUTATED 1 2 3
RIT1 WILD-TYPE 130 136 158
'RIT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S732.  Gene #75: 'RIT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
RIT1 MUTATED 1 1 2
RIT1 WILD-TYPE 41 70 61
'RIT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.94

Table S733.  Gene #75: 'RIT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
RIT1 MUTATED 1 1 0 2 0
RIT1 WILD-TYPE 38 31 43 28 32
'RIT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S734.  Gene #75: 'RIT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
RIT1 MUTATED 2 3 3
RIT1 WILD-TYPE 148 182 140
'RIT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.83

Table S735.  Gene #75: 'RIT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
RIT1 MUTATED 0 2 0 2 1 2 1
RIT1 WILD-TYPE 72 107 90 42 48 44 67
'RIT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.93

Table S736.  Gene #75: 'RIT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
RIT1 MUTATED 2 2 3
RIT1 WILD-TYPE 173 209 87
'RIT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S737.  Gene #75: 'RIT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
RIT1 MUTATED 1 3 2 1
RIT1 WILD-TYPE 69 183 129 88
'RIT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S738.  Gene #75: 'RIT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
RIT1 MUTATED 3 3 0
RIT1 WILD-TYPE 138 179 89
'RIT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.93

Table S739.  Gene #75: 'RIT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
RIT1 MUTATED 3 2 1
RIT1 WILD-TYPE 91 231 84
'ASCL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S740.  Gene #76: 'ASCL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ASCL3 MUTATED 0 2 2 3
ASCL3 WILD-TYPE 65 208 70 128
'ASCL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S741.  Gene #76: 'ASCL3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ASCL3 MUTATED 0 2 3
ASCL3 WILD-TYPE 131 136 158
'ASCL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S742.  Gene #76: 'ASCL3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ASCL3 MUTATED 0 2 1
ASCL3 WILD-TYPE 42 69 62
'ASCL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S743.  Gene #76: 'ASCL3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ASCL3 MUTATED 1 0 2 0 0
ASCL3 WILD-TYPE 38 32 41 30 32
'ASCL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.93

Table S744.  Gene #76: 'ASCL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ASCL3 MUTATED 1 5 1
ASCL3 WILD-TYPE 149 180 142
'ASCL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S745.  Gene #76: 'ASCL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ASCL3 MUTATED 1 2 2 0 1 1 0
ASCL3 WILD-TYPE 71 107 88 44 48 45 68
'ASCL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0512 (Fisher's exact test), Q value = 0.62

Table S746.  Gene #76: 'ASCL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ASCL3 MUTATED 0 4 3
ASCL3 WILD-TYPE 175 207 87
'ASCL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.75

Table S747.  Gene #76: 'ASCL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ASCL3 MUTATED 0 2 1 4
ASCL3 WILD-TYPE 70 184 130 85
'ASCL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S748.  Gene #76: 'ASCL3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ASCL3 MUTATED 1 3 1
ASCL3 WILD-TYPE 140 179 88
'ASCL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S749.  Gene #76: 'ASCL3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ASCL3 MUTATED 2 3 0
ASCL3 WILD-TYPE 92 230 85
'CD84 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S750.  Gene #77: 'CD84 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CD84 MUTATED 2 2 0 2
CD84 WILD-TYPE 63 208 72 129
'CD84 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0578 (Fisher's exact test), Q value = 0.62

Table S751.  Gene #77: 'CD84 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CD84 MUTATED 1 4 0
CD84 WILD-TYPE 130 134 161
'CD84 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S752.  Gene #77: 'CD84 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CD84 MUTATED 1 4 1
CD84 WILD-TYPE 149 181 142
'CD84 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S753.  Gene #77: 'CD84 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CD84 MUTATED 0 2 1 1 1 1 0
CD84 WILD-TYPE 72 107 89 43 48 45 68
'CD84 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S754.  Gene #77: 'CD84 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CD84 MUTATED 2 4 0
CD84 WILD-TYPE 173 207 90
'CD84 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 0.97

Table S755.  Gene #77: 'CD84 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CD84 MUTATED 1 3 0 2
CD84 WILD-TYPE 69 183 131 87
'CD84 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S756.  Gene #77: 'CD84 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CD84 MUTATED 1 3 1
CD84 WILD-TYPE 140 179 88
'CD84 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S757.  Gene #77: 'CD84 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CD84 MUTATED 0 4 1
CD84 WILD-TYPE 94 229 84
'GYPC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.35

Table S758.  Gene #78: 'GYPC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
GYPC MUTATED 1 0 0 5
GYPC WILD-TYPE 64 210 72 126

Figure S123.  Get High-res Image Gene #78: 'GYPC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GYPC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.88

Table S759.  Gene #78: 'GYPC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
GYPC MUTATED 0 2 4
GYPC WILD-TYPE 131 136 157
'GYPC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.88

Table S760.  Gene #78: 'GYPC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
GYPC MUTATED 2 2 0
GYPC WILD-TYPE 40 69 63
'GYPC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S761.  Gene #78: 'GYPC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
GYPC MUTATED 1 1 1 1 0
GYPC WILD-TYPE 38 31 42 29 32
'GYPC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S762.  Gene #78: 'GYPC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
GYPC MUTATED 3 2 1
GYPC WILD-TYPE 147 183 142
'GYPC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S763.  Gene #78: 'GYPC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
GYPC MUTATED 0 1 3 0 1 0 1
GYPC WILD-TYPE 72 108 87 44 48 46 67
'GYPC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.84

Table S764.  Gene #78: 'GYPC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
GYPC MUTATED 1 5 0
GYPC WILD-TYPE 174 206 90
'GYPC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S765.  Gene #78: 'GYPC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
GYPC MUTATED 0 3 3 0
GYPC WILD-TYPE 70 183 128 89
'GYPC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S766.  Gene #78: 'GYPC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
GYPC MUTATED 1 3 2
GYPC WILD-TYPE 140 179 87
'GYPC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S767.  Gene #78: 'GYPC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
GYPC MUTATED 0 4 2
GYPC WILD-TYPE 94 229 83
'MYH7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S768.  Gene #79: 'MYH7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
MYH7 MUTATED 1 1 0 1
MYH7 WILD-TYPE 4 6 5 2
'MYH7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S769.  Gene #79: 'MYH7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
MYH7 MUTATED 1 1 1
MYH7 WILD-TYPE 6 8 3
'MYH7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S770.  Gene #79: 'MYH7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MYH7 MUTATED 7 18 9 18
MYH7 WILD-TYPE 58 192 63 113
'MYH7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0648 (Fisher's exact test), Q value = 0.65

Table S771.  Gene #79: 'MYH7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MYH7 MUTATED 7 16 21
MYH7 WILD-TYPE 124 122 140
'MYH7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S772.  Gene #79: 'MYH7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
MYH7 MUTATED 5 6 5
MYH7 WILD-TYPE 37 65 58
'MYH7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.8

Table S773.  Gene #79: 'MYH7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
MYH7 MUTATED 2 4 6 0 4
MYH7 WILD-TYPE 37 28 37 30 28
'MYH7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S774.  Gene #79: 'MYH7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MYH7 MUTATED 15 20 17
MYH7 WILD-TYPE 135 165 126
'MYH7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S775.  Gene #79: 'MYH7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MYH7 MUTATED 6 11 12 2 7 5 9
MYH7 WILD-TYPE 66 98 78 42 42 41 59
'MYH7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.73

Table S776.  Gene #79: 'MYH7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MYH7 MUTATED 14 30 7
MYH7 WILD-TYPE 161 181 83
'MYH7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0937 (Fisher's exact test), Q value = 0.72

Table S777.  Gene #79: 'MYH7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MYH7 MUTATED 4 18 13 16
MYH7 WILD-TYPE 66 168 118 73
'MYH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S778.  Gene #79: 'MYH7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MYH7 MUTATED 17 16 6
MYH7 WILD-TYPE 124 166 83
'MYH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S779.  Gene #79: 'MYH7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MYH7 MUTATED 6 24 9
MYH7 WILD-TYPE 88 209 76
'UROC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S780.  Gene #80: 'UROC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
UROC1 MUTATED 2 6 3 4
UROC1 WILD-TYPE 63 204 69 127
'UROC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S781.  Gene #80: 'UROC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
UROC1 MUTATED 3 3 7
UROC1 WILD-TYPE 128 135 154
'UROC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.84

Table S782.  Gene #80: 'UROC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
UROC1 MUTATED 0 5 2
UROC1 WILD-TYPE 42 66 61
'UROC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.94

Table S783.  Gene #80: 'UROC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
UROC1 MUTATED 3 0 3 1 0
UROC1 WILD-TYPE 36 32 40 29 32
'UROC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.83

Table S784.  Gene #80: 'UROC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
UROC1 MUTATED 4 9 2
UROC1 WILD-TYPE 146 176 141
'UROC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S785.  Gene #80: 'UROC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
UROC1 MUTATED 1 6 3 1 1 0 3
UROC1 WILD-TYPE 71 103 87 43 48 46 65
'UROC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00136 (Fisher's exact test), Q value = 0.12

Table S786.  Gene #80: 'UROC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
UROC1 MUTATED 0 12 3
UROC1 WILD-TYPE 175 199 87

Figure S124.  Get High-res Image Gene #80: 'UROC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'UROC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.84

Table S787.  Gene #80: 'UROC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
UROC1 MUTATED 0 7 3 5
UROC1 WILD-TYPE 70 179 128 84
'UROC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S788.  Gene #80: 'UROC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
UROC1 MUTATED 4 6 3
UROC1 WILD-TYPE 137 176 86
'UROC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.83

Table S789.  Gene #80: 'UROC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
UROC1 MUTATED 1 11 1
UROC1 WILD-TYPE 93 222 84
'HSF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.83

Table S790.  Gene #81: 'HSF5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
HSF5 MUTATED 0 4 3 6
HSF5 WILD-TYPE 65 206 69 125
'HSF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S791.  Gene #81: 'HSF5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
HSF5 MUTATED 2 5 5
HSF5 WILD-TYPE 129 133 156
'HSF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S792.  Gene #81: 'HSF5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
HSF5 MUTATED 0 2 3
HSF5 WILD-TYPE 42 69 60
'HSF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S793.  Gene #81: 'HSF5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
HSF5 MUTATED 1 0 3 1 0
HSF5 WILD-TYPE 38 32 40 29 32
'HSF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S794.  Gene #81: 'HSF5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
HSF5 MUTATED 4 7 2
HSF5 WILD-TYPE 146 178 141
'HSF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S795.  Gene #81: 'HSF5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
HSF5 MUTATED 0 5 4 1 0 1 2
HSF5 WILD-TYPE 72 104 86 43 49 45 66
'HSF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.78

Table S796.  Gene #81: 'HSF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
HSF5 MUTATED 5 8 0
HSF5 WILD-TYPE 170 203 90
'HSF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S797.  Gene #81: 'HSF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
HSF5 MUTATED 2 5 2 4
HSF5 WILD-TYPE 68 181 129 85
'HSF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S798.  Gene #81: 'HSF5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
HSF5 MUTATED 5 6 1
HSF5 WILD-TYPE 136 176 88
'HSF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S799.  Gene #81: 'HSF5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
HSF5 MUTATED 2 8 2
HSF5 WILD-TYPE 92 225 83
'HSPA8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.8

Table S800.  Gene #82: 'HSPA8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
HSPA8 MUTATED 0 2 2 5
HSPA8 WILD-TYPE 65 208 70 126
'HSPA8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.85

Table S801.  Gene #82: 'HSPA8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
HSPA8 MUTATED 0 3 4
HSPA8 WILD-TYPE 131 135 157
'HSPA8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S802.  Gene #82: 'HSPA8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
HSPA8 MUTATED 1 1 1
HSPA8 WILD-TYPE 41 70 62
'HSPA8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.95

Table S803.  Gene #82: 'HSPA8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
HSPA8 MUTATED 2 0 0 1 0
HSPA8 WILD-TYPE 37 32 43 29 32
'HSPA8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S804.  Gene #82: 'HSPA8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
HSPA8 MUTATED 2 5 2
HSPA8 WILD-TYPE 148 180 141
'HSPA8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.88

Table S805.  Gene #82: 'HSPA8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
HSPA8 MUTATED 0 2 5 0 0 1 1
HSPA8 WILD-TYPE 72 107 85 44 49 45 67
'HSPA8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00529 (Fisher's exact test), Q value = 0.26

Table S806.  Gene #82: 'HSPA8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
HSPA8 MUTATED 0 8 0
HSPA8 WILD-TYPE 175 203 90

Figure S125.  Get High-res Image Gene #82: 'HSPA8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HSPA8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.8

Table S807.  Gene #82: 'HSPA8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
HSPA8 MUTATED 0 2 2 4
HSPA8 WILD-TYPE 70 184 129 85
'HSPA8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.95

Table S808.  Gene #82: 'HSPA8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
HSPA8 MUTATED 4 3 0
HSPA8 WILD-TYPE 137 179 89
'HSPA8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S809.  Gene #82: 'HSPA8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
HSPA8 MUTATED 1 5 1
HSPA8 WILD-TYPE 93 228 84
'HTRA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.9

Table S810.  Gene #83: 'HTRA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
HTRA1 MUTATED 0 3 3 4
HTRA1 WILD-TYPE 65 207 69 127
'HTRA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.83

Table S811.  Gene #83: 'HTRA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
HTRA1 MUTATED 1 6 3
HTRA1 WILD-TYPE 130 132 158
'HTRA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S812.  Gene #83: 'HTRA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
HTRA1 MUTATED 3 4 3
HTRA1 WILD-TYPE 147 181 140
'HTRA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S813.  Gene #83: 'HTRA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
HTRA1 MUTATED 1 1 3 2 1 1 1
HTRA1 WILD-TYPE 71 108 87 42 48 45 67
'HTRA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S814.  Gene #83: 'HTRA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
HTRA1 MUTATED 4 5 1
HTRA1 WILD-TYPE 171 206 89
'HTRA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0797 (Fisher's exact test), Q value = 0.68

Table S815.  Gene #83: 'HTRA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
HTRA1 MUTATED 3 2 1 4
HTRA1 WILD-TYPE 67 184 130 85
'HTRA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S816.  Gene #83: 'HTRA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
HTRA1 MUTATED 3 5 2
HTRA1 WILD-TYPE 138 177 87
'HTRA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S817.  Gene #83: 'HTRA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
HTRA1 MUTATED 3 6 1
HTRA1 WILD-TYPE 91 227 84
'DST MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S818.  Gene #84: 'DST MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
DST MUTATED 1 2 0 1
DST WILD-TYPE 4 5 5 2
'DST MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S819.  Gene #84: 'DST MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
DST MUTATED 1 2 1
DST WILD-TYPE 6 7 3
'DST MUTATION STATUS' versus 'CN_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.82

Table S820.  Gene #84: 'DST MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
DST MUTATED 11 31 17 30
DST WILD-TYPE 54 179 55 101
'DST MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0591 (Fisher's exact test), Q value = 0.62

Table S821.  Gene #84: 'DST MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
DST MUTATED 15 28 34
DST WILD-TYPE 116 110 127
'DST MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.93

Table S822.  Gene #84: 'DST MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
DST MUTATED 8 8 13
DST WILD-TYPE 34 63 50
'DST MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S823.  Gene #84: 'DST MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
DST MUTATED 3 6 9 5 6
DST WILD-TYPE 36 26 34 25 26
'DST MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S824.  Gene #84: 'DST MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
DST MUTATED 24 37 28
DST WILD-TYPE 126 148 115
'DST MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S825.  Gene #84: 'DST MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
DST MUTATED 11 23 21 6 12 5 11
DST WILD-TYPE 61 86 69 38 37 41 57
'DST MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0471 (Fisher's exact test), Q value = 0.62

Table S826.  Gene #84: 'DST MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
DST MUTATED 28 49 11
DST WILD-TYPE 147 162 79

Figure S126.  Get High-res Image Gene #84: 'DST MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DST MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00039 (Fisher's exact test), Q value = 0.054

Table S827.  Gene #84: 'DST MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
DST MUTATED 12 32 14 30
DST WILD-TYPE 58 154 117 59

Figure S127.  Get High-res Image Gene #84: 'DST MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DST MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S828.  Gene #84: 'DST MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
DST MUTATED 29 31 14
DST WILD-TYPE 112 151 75
'DST MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0438 (Fisher's exact test), Q value = 0.6

Table S829.  Gene #84: 'DST MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
DST MUTATED 9 48 17
DST WILD-TYPE 85 185 68

Figure S128.  Get High-res Image Gene #84: 'DST MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SRMS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0097 (Fisher's exact test), Q value = 0.33

Table S830.  Gene #85: 'SRMS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SRMS MUTATED 3 1 0 6
SRMS WILD-TYPE 62 209 72 125

Figure S129.  Get High-res Image Gene #85: 'SRMS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SRMS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S831.  Gene #85: 'SRMS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SRMS MUTATED 1 3 5
SRMS WILD-TYPE 130 135 156
'SRMS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S832.  Gene #85: 'SRMS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SRMS MUTATED 1 1 1
SRMS WILD-TYPE 41 70 62
'SRMS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S833.  Gene #85: 'SRMS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SRMS MUTATED 0 0 2 0 1
SRMS WILD-TYPE 39 32 41 30 31
'SRMS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0638 (Fisher's exact test), Q value = 0.64

Table S834.  Gene #85: 'SRMS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SRMS MUTATED 0 6 4
SRMS WILD-TYPE 150 179 139
'SRMS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S835.  Gene #85: 'SRMS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SRMS MUTATED 1 3 2 1 2 0 1
SRMS WILD-TYPE 71 106 88 43 47 46 67
'SRMS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.88

Table S836.  Gene #85: 'SRMS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SRMS MUTATED 1 6 2
SRMS WILD-TYPE 174 205 88
'SRMS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S837.  Gene #85: 'SRMS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SRMS MUTATED 1 5 1 2
SRMS WILD-TYPE 69 181 130 87
'SRMS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.73

Table S838.  Gene #85: 'SRMS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SRMS MUTATED 2 7 0
SRMS WILD-TYPE 139 175 89
'SRMS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S839.  Gene #85: 'SRMS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SRMS MUTATED 2 7 0
SRMS WILD-TYPE 92 226 85
'PTPRU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.37

Table S840.  Gene #86: 'PTPRU MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PTPRU MUTATED 2 3 2 11
PTPRU WILD-TYPE 63 207 70 120

Figure S130.  Get High-res Image Gene #86: 'PTPRU MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTPRU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.73

Table S841.  Gene #86: 'PTPRU MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PTPRU MUTATED 1 5 8
PTPRU WILD-TYPE 130 133 153
'PTPRU MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S842.  Gene #86: 'PTPRU MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
PTPRU MUTATED 2 2 2
PTPRU WILD-TYPE 40 69 61
'PTPRU MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.97

Table S843.  Gene #86: 'PTPRU MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
PTPRU MUTATED 0 2 2 0 2
PTPRU WILD-TYPE 39 30 41 30 30
'PTPRU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.36

Table S844.  Gene #86: 'PTPRU MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PTPRU MUTATED 1 12 5
PTPRU WILD-TYPE 149 173 138

Figure S131.  Get High-res Image Gene #86: 'PTPRU MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PTPRU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0601 (Fisher's exact test), Q value = 0.62

Table S845.  Gene #86: 'PTPRU MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PTPRU MUTATED 2 6 8 0 1 1 0
PTPRU WILD-TYPE 70 103 82 44 48 45 68
'PTPRU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00298 (Fisher's exact test), Q value = 0.19

Table S846.  Gene #86: 'PTPRU MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PTPRU MUTATED 1 14 2
PTPRU WILD-TYPE 174 197 88

Figure S132.  Get High-res Image Gene #86: 'PTPRU MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PTPRU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00729 (Fisher's exact test), Q value = 0.3

Table S847.  Gene #86: 'PTPRU MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PTPRU MUTATED 0 9 1 7
PTPRU WILD-TYPE 70 177 130 82

Figure S133.  Get High-res Image Gene #86: 'PTPRU MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PTPRU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S848.  Gene #86: 'PTPRU MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PTPRU MUTATED 4 6 3
PTPRU WILD-TYPE 137 176 86
'PTPRU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.83

Table S849.  Gene #86: 'PTPRU MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PTPRU MUTATED 1 11 1
PTPRU WILD-TYPE 93 222 84
'ADAM10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0905 (Fisher's exact test), Q value = 0.72

Table S850.  Gene #87: 'ADAM10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ADAM10 MUTATED 3 1 1 3
ADAM10 WILD-TYPE 62 209 71 128
'ADAM10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.83

Table S851.  Gene #87: 'ADAM10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ADAM10 MUTATED 0 4 3
ADAM10 WILD-TYPE 131 134 158
'ADAM10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.97

Table S852.  Gene #87: 'ADAM10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ADAM10 MUTATED 1 0 2
ADAM10 WILD-TYPE 41 71 61
'ADAM10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S853.  Gene #87: 'ADAM10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ADAM10 MUTATED 0 1 0 1 1
ADAM10 WILD-TYPE 39 31 43 29 31
'ADAM10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.96

Table S854.  Gene #87: 'ADAM10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ADAM10 MUTATED 1 3 4
ADAM10 WILD-TYPE 149 182 139
'ADAM10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S855.  Gene #87: 'ADAM10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ADAM10 MUTATED 0 3 3 1 1 0 0
ADAM10 WILD-TYPE 72 106 87 43 48 46 68
'ADAM10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.88

Table S856.  Gene #87: 'ADAM10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ADAM10 MUTATED 1 6 1
ADAM10 WILD-TYPE 174 205 89
'ADAM10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0755 (Fisher's exact test), Q value = 0.67

Table S857.  Gene #87: 'ADAM10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ADAM10 MUTATED 1 3 0 4
ADAM10 WILD-TYPE 69 183 131 85
'ADAM10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S858.  Gene #87: 'ADAM10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ADAM10 MUTATED 1 4 2
ADAM10 WILD-TYPE 140 178 87
'ADAM10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S859.  Gene #87: 'ADAM10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ADAM10 MUTATED 1 6 0
ADAM10 WILD-TYPE 93 227 85
'MRPS35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S860.  Gene #88: 'MRPS35 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MRPS35 MUTATED 0 3 2 1
MRPS35 WILD-TYPE 65 207 70 130
'MRPS35 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.82

Table S861.  Gene #88: 'MRPS35 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MRPS35 MUTATED 2 3 0
MRPS35 WILD-TYPE 129 135 161
'MRPS35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S862.  Gene #88: 'MRPS35 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MRPS35 MUTATED 1 4 1
MRPS35 WILD-TYPE 149 181 142
'MRPS35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S863.  Gene #88: 'MRPS35 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MRPS35 MUTATED 0 2 3 0 0 0 1
MRPS35 WILD-TYPE 72 107 87 44 49 46 67
'MRPS35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S864.  Gene #88: 'MRPS35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MRPS35 MUTATED 2 4 0
MRPS35 WILD-TYPE 173 207 90
'MRPS35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S865.  Gene #88: 'MRPS35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MRPS35 MUTATED 1 2 1 2
MRPS35 WILD-TYPE 69 184 130 87
'MRPS35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S866.  Gene #88: 'MRPS35 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MRPS35 MUTATED 3 2 0
MRPS35 WILD-TYPE 138 180 89
'MRPS35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S867.  Gene #88: 'MRPS35 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MRPS35 MUTATED 1 3 1
MRPS35 WILD-TYPE 93 230 84
'ZNF608 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.83

Table S868.  Gene #89: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ZNF608 MUTATED 3 3 2 1
ZNF608 WILD-TYPE 62 207 70 130
'ZNF608 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S869.  Gene #89: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ZNF608 MUTATED 3 4 2
ZNF608 WILD-TYPE 128 134 159
'ZNF608 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.84

Table S870.  Gene #89: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ZNF608 MUTATED 1 3 5
ZNF608 WILD-TYPE 149 182 138
'ZNF608 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00918 (Fisher's exact test), Q value = 0.33

Table S871.  Gene #89: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ZNF608 MUTATED 1 0 1 2 4 1 0
ZNF608 WILD-TYPE 71 109 89 42 45 45 68

Figure S134.  Get High-res Image Gene #89: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S872.  Gene #89: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ZNF608 MUTATED 2 6 1
ZNF608 WILD-TYPE 173 205 89
'ZNF608 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S873.  Gene #89: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ZNF608 MUTATED 0 4 2 3
ZNF608 WILD-TYPE 70 182 129 86
'ZNF608 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S874.  Gene #89: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ZNF608 MUTATED 2 4 3
ZNF608 WILD-TYPE 139 178 86
'ZNF608 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S875.  Gene #89: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ZNF608 MUTATED 2 7 0
ZNF608 WILD-TYPE 92 226 85
'ARHGAP32 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S876.  Gene #90: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ARHGAP32 MUTATED 2 7 3 7
ARHGAP32 WILD-TYPE 63 203 69 124
'ARHGAP32 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S877.  Gene #90: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ARHGAP32 MUTATED 3 6 9
ARHGAP32 WILD-TYPE 128 132 152
'ARHGAP32 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.76

Table S878.  Gene #90: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ARHGAP32 MUTATED 1 0 3
ARHGAP32 WILD-TYPE 41 71 60
'ARHGAP32 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.86

Table S879.  Gene #90: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ARHGAP32 MUTATED 0 0 2 0 2
ARHGAP32 WILD-TYPE 39 32 41 30 30
'ARHGAP32 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.96

Table S880.  Gene #90: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ARHGAP32 MUTATED 3 9 7
ARHGAP32 WILD-TYPE 147 176 136
'ARHGAP32 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0652 (Fisher's exact test), Q value = 0.65

Table S881.  Gene #90: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ARHGAP32 MUTATED 0 4 7 2 4 0 2
ARHGAP32 WILD-TYPE 72 105 83 42 45 46 66
'ARHGAP32 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.88

Table S882.  Gene #90: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ARHGAP32 MUTATED 4 12 3
ARHGAP32 WILD-TYPE 171 199 87
'ARHGAP32 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0585 (Fisher's exact test), Q value = 0.62

Table S883.  Gene #90: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ARHGAP32 MUTATED 4 8 1 6
ARHGAP32 WILD-TYPE 66 178 130 83
'ARHGAP32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.79

Table S884.  Gene #90: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ARHGAP32 MUTATED 2 10 4
ARHGAP32 WILD-TYPE 139 172 85
'ARHGAP32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0629 (Fisher's exact test), Q value = 0.64

Table S885.  Gene #90: 'ARHGAP32 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ARHGAP32 MUTATED 3 13 0
ARHGAP32 WILD-TYPE 91 220 85
'NRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 0.67

Table S886.  Gene #91: 'NRAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
NRAS MUTATED 0 0 0 3
NRAS WILD-TYPE 65 210 72 128
'NRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.73

Table S887.  Gene #91: 'NRAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
NRAS MUTATED 0 3 0
NRAS WILD-TYPE 150 182 143
'NRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S888.  Gene #91: 'NRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
NRAS MUTATED 0 2 1 0 0 0 0
NRAS WILD-TYPE 72 107 89 44 49 46 68
'NRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.95

Table S889.  Gene #91: 'NRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
NRAS MUTATED 0 3 0
NRAS WILD-TYPE 175 208 90
'NRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.98

Table S890.  Gene #91: 'NRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
NRAS MUTATED 0 3 0 0
NRAS WILD-TYPE 70 183 131 89
'HCLS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S891.  Gene #92: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
HCLS1 MUTATED 2 6 5 3
HCLS1 WILD-TYPE 63 204 67 128
'HCLS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.96

Table S892.  Gene #92: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
HCLS1 MUTATED 5 7 3
HCLS1 WILD-TYPE 126 131 158
'HCLS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S893.  Gene #92: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
HCLS1 MUTATED 1 3 3
HCLS1 WILD-TYPE 41 68 60
'HCLS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S894.  Gene #92: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
HCLS1 MUTATED 2 0 1 3 1
HCLS1 WILD-TYPE 37 32 42 27 31
'HCLS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S895.  Gene #92: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
HCLS1 MUTATED 4 6 6
HCLS1 WILD-TYPE 146 179 137
'HCLS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.96

Table S896.  Gene #92: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
HCLS1 MUTATED 3 5 2 1 0 4 1
HCLS1 WILD-TYPE 69 104 88 43 49 42 67
'HCLS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S897.  Gene #92: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
HCLS1 MUTATED 7 7 2
HCLS1 WILD-TYPE 168 204 88
'HCLS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S898.  Gene #92: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
HCLS1 MUTATED 3 4 4 5
HCLS1 WILD-TYPE 67 182 127 84
'HCLS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S899.  Gene #92: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
HCLS1 MUTATED 6 5 4
HCLS1 WILD-TYPE 135 177 85
'HCLS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S900.  Gene #92: 'HCLS1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
HCLS1 MUTATED 4 9 2
HCLS1 WILD-TYPE 90 224 83
'KIAA0895L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0666 (Fisher's exact test), Q value = 0.65

Table S901.  Gene #93: 'KIAA0895L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
KIAA0895L MUTATED 1 0 2 1
KIAA0895L WILD-TYPE 64 210 70 130
'KIAA0895L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S902.  Gene #93: 'KIAA0895L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
KIAA0895L MUTATED 0 2 2
KIAA0895L WILD-TYPE 131 136 159
'KIAA0895L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.79

Table S903.  Gene #93: 'KIAA0895L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
KIAA0895L MUTATED 0 1 3
KIAA0895L WILD-TYPE 150 184 140
'KIAA0895L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0796 (Fisher's exact test), Q value = 0.68

Table S904.  Gene #93: 'KIAA0895L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
KIAA0895L MUTATED 0 0 1 0 2 1 0
KIAA0895L WILD-TYPE 72 109 89 44 47 45 68
'KIAA0895L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.79

Table S905.  Gene #93: 'KIAA0895L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
KIAA0895L MUTATED 0 4 0
KIAA0895L WILD-TYPE 175 207 90
'KIAA0895L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S906.  Gene #93: 'KIAA0895L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
KIAA0895L MUTATED 0 3 0 1
KIAA0895L WILD-TYPE 70 183 131 88
'KIAA0895L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.79

Table S907.  Gene #93: 'KIAA0895L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
KIAA0895L MUTATED 0 4 0
KIAA0895L WILD-TYPE 141 178 89
'KIAA0895L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S908.  Gene #93: 'KIAA0895L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
KIAA0895L MUTATED 0 3 1
KIAA0895L WILD-TYPE 94 230 84
'BMP2K MUTATION STATUS' versus 'CN_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S909.  Gene #94: 'BMP2K MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
BMP2K MUTATED 1 4 2 6
BMP2K WILD-TYPE 64 206 70 125
'BMP2K MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S910.  Gene #94: 'BMP2K MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
BMP2K MUTATED 3 5 4
BMP2K WILD-TYPE 128 133 157
'BMP2K MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S911.  Gene #94: 'BMP2K MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
BMP2K MUTATED 0 3 1
BMP2K WILD-TYPE 42 68 62
'BMP2K MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S912.  Gene #94: 'BMP2K MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
BMP2K MUTATED 2 0 1 1 0
BMP2K WILD-TYPE 37 32 42 29 32
'BMP2K MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.5

Table S913.  Gene #94: 'BMP2K MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
BMP2K MUTATED 2 10 1
BMP2K WILD-TYPE 148 175 142

Figure S135.  Get High-res Image Gene #94: 'BMP2K MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BMP2K MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0529 (Fisher's exact test), Q value = 0.62

Table S914.  Gene #94: 'BMP2K MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
BMP2K MUTATED 1 4 7 0 0 1 0
BMP2K WILD-TYPE 71 105 83 44 49 45 68
'BMP2K MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.73

Table S915.  Gene #94: 'BMP2K MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
BMP2K MUTATED 4 9 0
BMP2K WILD-TYPE 171 202 90
'BMP2K MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S916.  Gene #94: 'BMP2K MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
BMP2K MUTATED 1 6 2 4
BMP2K WILD-TYPE 69 180 129 85
'BMP2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.93

Table S917.  Gene #94: 'BMP2K MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
BMP2K MUTATED 2 8 2
BMP2K WILD-TYPE 139 174 87
'BMP2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S918.  Gene #94: 'BMP2K MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
BMP2K MUTATED 2 9 1
BMP2K WILD-TYPE 92 224 84
'DOT1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S919.  Gene #95: 'DOT1L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
DOT1L MUTATED 1 5 2 6
DOT1L WILD-TYPE 64 205 70 125
'DOT1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S920.  Gene #95: 'DOT1L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
DOT1L MUTATED 3 3 7
DOT1L WILD-TYPE 128 135 154
'DOT1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S921.  Gene #95: 'DOT1L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
DOT1L MUTATED 3 3 1
DOT1L WILD-TYPE 39 68 62
'DOT1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.96

Table S922.  Gene #95: 'DOT1L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
DOT1L MUTATED 1 3 1 2 0
DOT1L WILD-TYPE 38 29 42 28 32
'DOT1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S923.  Gene #95: 'DOT1L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
DOT1L MUTATED 3 6 5
DOT1L WILD-TYPE 147 179 138
'DOT1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00664 (Fisher's exact test), Q value = 0.29

Table S924.  Gene #95: 'DOT1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
DOT1L MUTATED 0 4 0 4 0 3 3
DOT1L WILD-TYPE 72 105 90 40 49 43 65

Figure S136.  Get High-res Image Gene #95: 'DOT1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DOT1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S925.  Gene #95: 'DOT1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
DOT1L MUTATED 6 5 3
DOT1L WILD-TYPE 169 206 87
'DOT1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0826 (Fisher's exact test), Q value = 0.68

Table S926.  Gene #95: 'DOT1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
DOT1L MUTATED 4 8 1 1
DOT1L WILD-TYPE 66 178 130 88
'DOT1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S927.  Gene #95: 'DOT1L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
DOT1L MUTATED 6 4 3
DOT1L WILD-TYPE 135 178 86
'DOT1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.95

Table S928.  Gene #95: 'DOT1L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
DOT1L MUTATED 5 7 1
DOT1L WILD-TYPE 89 226 84
'SND1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0517 (Fisher's exact test), Q value = 0.62

Table S929.  Gene #96: 'SND1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SND1 MUTATED 2 3 2 9
SND1 WILD-TYPE 63 207 70 122
'SND1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0591 (Fisher's exact test), Q value = 0.62

Table S930.  Gene #96: 'SND1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SND1 MUTATED 1 8 6
SND1 WILD-TYPE 130 130 155
'SND1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.94

Table S931.  Gene #96: 'SND1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SND1 MUTATED 1 1 4
SND1 WILD-TYPE 41 70 59
'SND1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 0.97

Table S932.  Gene #96: 'SND1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SND1 MUTATED 1 0 3 2 0
SND1 WILD-TYPE 38 32 40 28 32
'SND1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0583 (Fisher's exact test), Q value = 0.62

Table S933.  Gene #96: 'SND1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SND1 MUTATED 1 8 7
SND1 WILD-TYPE 149 177 136
'SND1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.023 (Fisher's exact test), Q value = 0.48

Table S934.  Gene #96: 'SND1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SND1 MUTATED 0 4 7 0 3 2 0
SND1 WILD-TYPE 72 105 83 44 46 44 68

Figure S137.  Get High-res Image Gene #96: 'SND1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SND1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0336 (Fisher's exact test), Q value = 0.54

Table S935.  Gene #96: 'SND1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SND1 MUTATED 2 12 2
SND1 WILD-TYPE 173 199 88

Figure S138.  Get High-res Image Gene #96: 'SND1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SND1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0889 (Fisher's exact test), Q value = 0.71

Table S936.  Gene #96: 'SND1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SND1 MUTATED 1 10 1 4
SND1 WILD-TYPE 69 176 130 85
'SND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.93

Table S937.  Gene #96: 'SND1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SND1 MUTATED 4 9 1
SND1 WILD-TYPE 137 173 88
'SND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 0.39

Table S938.  Gene #96: 'SND1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SND1 MUTATED 0 13 1
SND1 WILD-TYPE 94 220 84

Figure S139.  Get High-res Image Gene #96: 'SND1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'VGLL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S939.  Gene #97: 'VGLL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
VGLL3 MUTATED 3 5 3 6
VGLL3 WILD-TYPE 62 205 69 125
'VGLL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.97

Table S940.  Gene #97: 'VGLL3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
VGLL3 MUTATED 4 8 4
VGLL3 WILD-TYPE 127 130 157
'VGLL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S941.  Gene #97: 'VGLL3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
VGLL3 MUTATED 0 1 2
VGLL3 WILD-TYPE 42 70 61
'VGLL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S942.  Gene #97: 'VGLL3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
VGLL3 MUTATED 0 0 2 1 0
VGLL3 WILD-TYPE 39 32 41 29 32
'VGLL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S943.  Gene #97: 'VGLL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
VGLL3 MUTATED 3 8 6
VGLL3 WILD-TYPE 147 177 137
'VGLL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S944.  Gene #97: 'VGLL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
VGLL3 MUTATED 1 5 5 1 2 2 1
VGLL3 WILD-TYPE 71 104 85 43 47 44 67
'VGLL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.88

Table S945.  Gene #97: 'VGLL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
VGLL3 MUTATED 5 11 1
VGLL3 WILD-TYPE 170 200 89
'VGLL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S946.  Gene #97: 'VGLL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
VGLL3 MUTATED 3 7 2 5
VGLL3 WILD-TYPE 67 179 129 84
'VGLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.79

Table S947.  Gene #97: 'VGLL3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
VGLL3 MUTATED 2 10 3
VGLL3 WILD-TYPE 139 172 86
'VGLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S948.  Gene #97: 'VGLL3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
VGLL3 MUTATED 3 11 1
VGLL3 WILD-TYPE 91 222 84
'LUM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.73

Table S949.  Gene #98: 'LUM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
LUM MUTATED 2 3 2 8
LUM WILD-TYPE 63 207 70 123
'LUM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S950.  Gene #98: 'LUM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
LUM MUTATED 3 6 5
LUM WILD-TYPE 128 132 156
'LUM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S951.  Gene #98: 'LUM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
LUM MUTATED 1 1 3
LUM WILD-TYPE 41 70 60
'LUM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S952.  Gene #98: 'LUM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
LUM MUTATED 1 1 1 0 2
LUM WILD-TYPE 38 31 42 30 30
'LUM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S953.  Gene #98: 'LUM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
LUM MUTATED 3 6 6
LUM WILD-TYPE 147 179 137
'LUM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S954.  Gene #98: 'LUM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
LUM MUTATED 2 5 3 1 3 1 0
LUM WILD-TYPE 70 104 87 43 46 45 68
'LUM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S955.  Gene #98: 'LUM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
LUM MUTATED 4 8 2
LUM WILD-TYPE 171 203 88
'LUM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S956.  Gene #98: 'LUM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
LUM MUTATED 1 8 2 3
LUM WILD-TYPE 69 178 129 86
'LUM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S957.  Gene #98: 'LUM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
LUM MUTATED 4 8 2
LUM WILD-TYPE 137 174 87
'LUM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S958.  Gene #98: 'LUM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
LUM MUTATED 2 9 3
LUM WILD-TYPE 92 224 82
'ATP1B4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S959.  Gene #99: 'ATP1B4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ATP1B4 MUTATED 1 5 0 3
ATP1B4 WILD-TYPE 64 205 72 128
'ATP1B4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.53

Table S960.  Gene #99: 'ATP1B4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ATP1B4 MUTATED 6 1 1
ATP1B4 WILD-TYPE 125 137 160

Figure S140.  Get High-res Image Gene #99: 'ATP1B4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ATP1B4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S961.  Gene #99: 'ATP1B4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ATP1B4 MUTATED 1 4 1
ATP1B4 WILD-TYPE 41 67 62
'ATP1B4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.95

Table S962.  Gene #99: 'ATP1B4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ATP1B4 MUTATED 3 0 1 0 2
ATP1B4 WILD-TYPE 36 32 42 30 30
'ATP1B4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S963.  Gene #99: 'ATP1B4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ATP1B4 MUTATED 3 4 2
ATP1B4 WILD-TYPE 147 181 141
'ATP1B4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S964.  Gene #99: 'ATP1B4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ATP1B4 MUTATED 3 3 2 0 1 0 0
ATP1B4 WILD-TYPE 69 106 88 44 48 46 68
'ATP1B4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S965.  Gene #99: 'ATP1B4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ATP1B4 MUTATED 2 6 1
ATP1B4 WILD-TYPE 173 205 89
'ATP1B4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S966.  Gene #99: 'ATP1B4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ATP1B4 MUTATED 2 3 2 2
ATP1B4 WILD-TYPE 68 183 129 87
'ATP1B4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S967.  Gene #99: 'ATP1B4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ATP1B4 MUTATED 4 2 1
ATP1B4 WILD-TYPE 137 180 88
'ATP1B4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.97

Table S968.  Gene #99: 'ATP1B4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ATP1B4 MUTATED 1 3 3
ATP1B4 WILD-TYPE 93 230 82
'ATAD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.5

Table S969.  Gene #100: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ATAD2 MUTATED 1 2 5 6
ATAD2 WILD-TYPE 64 208 67 125

Figure S141.  Get High-res Image Gene #100: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATAD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0279 (Fisher's exact test), Q value = 0.52

Table S970.  Gene #100: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ATAD2 MUTATED 0 6 7
ATAD2 WILD-TYPE 131 132 154

Figure S142.  Get High-res Image Gene #100: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ATAD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S971.  Gene #100: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ATAD2 MUTATED 2 1 1
ATAD2 WILD-TYPE 40 70 62
'ATAD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S972.  Gene #100: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ATAD2 MUTATED 0 1 2 0 1
ATAD2 WILD-TYPE 39 31 41 30 31
'ATAD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0542 (Fisher's exact test), Q value = 0.62

Table S973.  Gene #100: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ATAD2 MUTATED 1 9 3
ATAD2 WILD-TYPE 149 176 140
'ATAD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.93

Table S974.  Gene #100: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ATAD2 MUTATED 0 4 5 2 1 0 1
ATAD2 WILD-TYPE 72 105 85 42 48 46 67
'ATAD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S975.  Gene #100: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ATAD2 MUTATED 3 7 4
ATAD2 WILD-TYPE 172 204 86
'ATAD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0164 (Fisher's exact test), Q value = 0.4

Table S976.  Gene #100: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ATAD2 MUTATED 2 6 0 6
ATAD2 WILD-TYPE 68 180 131 83

Figure S143.  Get High-res Image Gene #100: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ATAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S977.  Gene #100: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ATAD2 MUTATED 4 5 4
ATAD2 WILD-TYPE 137 177 85
'ATAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S978.  Gene #100: 'ATAD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ATAD2 MUTATED 2 10 1
ATAD2 WILD-TYPE 92 223 84
'SLC17A9 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S979.  Gene #101: 'SLC17A9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SLC17A9 MUTATED 1 4 1 2
SLC17A9 WILD-TYPE 64 206 71 129
'SLC17A9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S980.  Gene #101: 'SLC17A9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SLC17A9 MUTATED 2 2 4
SLC17A9 WILD-TYPE 129 136 157
'SLC17A9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S981.  Gene #101: 'SLC17A9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SLC17A9 MUTATED 0 2 1
SLC17A9 WILD-TYPE 42 69 62
'SLC17A9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S982.  Gene #101: 'SLC17A9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SLC17A9 MUTATED 2 0 1 0 0
SLC17A9 WILD-TYPE 37 32 42 30 32
'SLC17A9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S983.  Gene #101: 'SLC17A9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SLC17A9 MUTATED 1 4 3
SLC17A9 WILD-TYPE 149 181 140
'SLC17A9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S984.  Gene #101: 'SLC17A9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SLC17A9 MUTATED 1 2 2 1 0 0 2
SLC17A9 WILD-TYPE 71 107 88 43 49 46 66
'SLC17A9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.84

Table S985.  Gene #101: 'SLC17A9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SLC17A9 MUTATED 2 6 0
SLC17A9 WILD-TYPE 173 205 90
'SLC17A9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S986.  Gene #101: 'SLC17A9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SLC17A9 MUTATED 2 3 1 2
SLC17A9 WILD-TYPE 68 183 130 87
'SLC17A9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S987.  Gene #101: 'SLC17A9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SLC17A9 MUTATED 2 4 1
SLC17A9 WILD-TYPE 139 178 88
'SLC17A9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S988.  Gene #101: 'SLC17A9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SLC17A9 MUTATED 2 4 1
SLC17A9 WILD-TYPE 92 229 84
'ZNF592 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S989.  Gene #102: 'ZNF592 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ZNF592 MUTATED 1 6 2 7
ZNF592 WILD-TYPE 64 204 70 124
'ZNF592 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.88

Table S990.  Gene #102: 'ZNF592 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ZNF592 MUTATED 3 8 4
ZNF592 WILD-TYPE 128 130 157
'ZNF592 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S991.  Gene #102: 'ZNF592 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ZNF592 MUTATED 3 2 2
ZNF592 WILD-TYPE 39 69 61
'ZNF592 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S992.  Gene #102: 'ZNF592 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ZNF592 MUTATED 1 3 2 0 1
ZNF592 WILD-TYPE 38 29 41 30 31
'ZNF592 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.83

Table S993.  Gene #102: 'ZNF592 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ZNF592 MUTATED 2 9 5
ZNF592 WILD-TYPE 148 176 138
'ZNF592 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.78

Table S994.  Gene #102: 'ZNF592 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ZNF592 MUTATED 1 6 6 1 2 0 0
ZNF592 WILD-TYPE 71 103 84 43 47 46 68
'ZNF592 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0981 (Fisher's exact test), Q value = 0.73

Table S995.  Gene #102: 'ZNF592 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ZNF592 MUTATED 2 10 4
ZNF592 WILD-TYPE 173 201 86
'ZNF592 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00619 (Fisher's exact test), Q value = 0.28

Table S996.  Gene #102: 'ZNF592 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ZNF592 MUTATED 3 6 0 7
ZNF592 WILD-TYPE 67 180 131 82

Figure S144.  Get High-res Image Gene #102: 'ZNF592 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF592 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S997.  Gene #102: 'ZNF592 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ZNF592 MUTATED 3 8 3
ZNF592 WILD-TYPE 138 174 86
'ZNF592 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S998.  Gene #102: 'ZNF592 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ZNF592 MUTATED 2 10 2
ZNF592 WILD-TYPE 92 223 83
'ZNF556 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.93

Table S999.  Gene #103: 'ZNF556 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ZNF556 MUTATED 3 3 1 5
ZNF556 WILD-TYPE 62 207 71 126
'ZNF556 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S1000.  Gene #103: 'ZNF556 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ZNF556 MUTATED 2 5 4
ZNF556 WILD-TYPE 129 133 157
'ZNF556 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.83

Table S1001.  Gene #103: 'ZNF556 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ZNF556 MUTATED 0 3 0
ZNF556 WILD-TYPE 42 68 63
'ZNF556 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S1002.  Gene #103: 'ZNF556 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ZNF556 MUTATED 1 0 2 0 0
ZNF556 WILD-TYPE 38 32 41 30 32
'ZNF556 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.82

Table S1003.  Gene #103: 'ZNF556 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ZNF556 MUTATED 2 8 2
ZNF556 WILD-TYPE 148 177 141
'ZNF556 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.83

Table S1004.  Gene #103: 'ZNF556 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ZNF556 MUTATED 0 3 6 1 0 1 1
ZNF556 WILD-TYPE 72 106 84 43 49 45 67
'ZNF556 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.88

Table S1005.  Gene #103: 'ZNF556 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ZNF556 MUTATED 2 6 4
ZNF556 WILD-TYPE 173 205 86
'ZNF556 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S1006.  Gene #103: 'ZNF556 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ZNF556 MUTATED 1 5 2 4
ZNF556 WILD-TYPE 69 181 129 85
'ZNF556 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S1007.  Gene #103: 'ZNF556 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ZNF556 MUTATED 3 6 2
ZNF556 WILD-TYPE 138 176 87
'ZNF556 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0529 (Fisher's exact test), Q value = 0.62

Table S1008.  Gene #103: 'ZNF556 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ZNF556 MUTATED 0 10 1
ZNF556 WILD-TYPE 94 223 84
'ZEB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S1009.  Gene #104: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
ZEB1 MUTATED 1 2 0 1
ZEB1 WILD-TYPE 4 5 5 2
'ZEB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1010.  Gene #104: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
ZEB1 MUTATED 1 2 1
ZEB1 WILD-TYPE 6 7 3
'ZEB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S1011.  Gene #104: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ZEB1 MUTATED 6 12 6 8
ZEB1 WILD-TYPE 59 198 66 123
'ZEB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S1012.  Gene #104: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ZEB1 MUTATED 7 11 10
ZEB1 WILD-TYPE 124 127 151
'ZEB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S1013.  Gene #104: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ZEB1 MUTATED 4 3 3
ZEB1 WILD-TYPE 38 68 60
'ZEB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S1014.  Gene #104: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ZEB1 MUTATED 2 3 1 3 1
ZEB1 WILD-TYPE 37 29 42 27 31
'ZEB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S1015.  Gene #104: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ZEB1 MUTATED 7 15 9
ZEB1 WILD-TYPE 143 170 134
'ZEB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S1016.  Gene #104: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ZEB1 MUTATED 4 9 8 2 3 0 5
ZEB1 WILD-TYPE 68 100 82 42 46 46 63
'ZEB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S1017.  Gene #104: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ZEB1 MUTATED 9 17 5
ZEB1 WILD-TYPE 166 194 85
'ZEB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0426 (Fisher's exact test), Q value = 0.59

Table S1018.  Gene #104: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ZEB1 MUTATED 3 8 8 12
ZEB1 WILD-TYPE 67 178 123 77

Figure S145.  Get High-res Image Gene #104: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZEB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S1019.  Gene #104: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ZEB1 MUTATED 8 12 5
ZEB1 WILD-TYPE 133 170 84
'ZEB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S1020.  Gene #104: 'ZEB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ZEB1 MUTATED 5 13 7
ZEB1 WILD-TYPE 89 220 78
'SLC22A6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1021.  Gene #105: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
SLC22A6 MUTATED 1 2 0 1
SLC22A6 WILD-TYPE 4 5 5 2
'SLC22A6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1022.  Gene #105: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
SLC22A6 MUTATED 1 2 1
SLC22A6 WILD-TYPE 6 7 3
'SLC22A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S1023.  Gene #105: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SLC22A6 MUTATED 2 6 1 5
SLC22A6 WILD-TYPE 63 204 71 126
'SLC22A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.88

Table S1024.  Gene #105: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SLC22A6 MUTATED 3 1 6
SLC22A6 WILD-TYPE 128 137 155
'SLC22A6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S1025.  Gene #105: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SLC22A6 MUTATED 0 3 2
SLC22A6 WILD-TYPE 42 68 61
'SLC22A6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S1026.  Gene #105: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SLC22A6 MUTATED 2 1 2 0 0
SLC22A6 WILD-TYPE 37 31 41 30 32
'SLC22A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.83

Table S1027.  Gene #105: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SLC22A6 MUTATED 3 9 2
SLC22A6 WILD-TYPE 147 176 141
'SLC22A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0674 (Fisher's exact test), Q value = 0.65

Table S1028.  Gene #105: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SLC22A6 MUTATED 1 7 5 0 0 1 0
SLC22A6 WILD-TYPE 71 102 85 44 49 45 68
'SLC22A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.73

Table S1029.  Gene #105: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SLC22A6 MUTATED 2 7 5
SLC22A6 WILD-TYPE 173 204 85
'SLC22A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S1030.  Gene #105: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SLC22A6 MUTATED 2 6 2 4
SLC22A6 WILD-TYPE 68 180 129 85
'SLC22A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.92

Table S1031.  Gene #105: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SLC22A6 MUTATED 2 3 4
SLC22A6 WILD-TYPE 139 179 85
'SLC22A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S1032.  Gene #105: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SLC22A6 MUTATED 2 6 1
SLC22A6 WILD-TYPE 92 227 84
'RABEPK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S1033.  Gene #106: 'RABEPK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
RABEPK MUTATED 1 2 1 2
RABEPK WILD-TYPE 64 208 71 129
'RABEPK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1034.  Gene #106: 'RABEPK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
RABEPK MUTATED 2 1 3
RABEPK WILD-TYPE 129 137 158
'RABEPK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.83

Table S1035.  Gene #106: 'RABEPK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
RABEPK MUTATED 0 3 0
RABEPK WILD-TYPE 42 68 63
'RABEPK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S1036.  Gene #106: 'RABEPK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
RABEPK MUTATED 2 0 1 0 0
RABEPK WILD-TYPE 37 32 42 30 32
'RABEPK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S1037.  Gene #106: 'RABEPK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
RABEPK MUTATED 1 3 2
RABEPK WILD-TYPE 149 182 141
'RABEPK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S1038.  Gene #106: 'RABEPK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
RABEPK MUTATED 0 3 0 0 1 1 1
RABEPK WILD-TYPE 72 106 90 44 48 45 67
'RABEPK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1039.  Gene #106: 'RABEPK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
RABEPK MUTATED 2 3 1
RABEPK WILD-TYPE 173 208 89
'RABEPK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S1040.  Gene #106: 'RABEPK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
RABEPK MUTATED 1 3 1 1
RABEPK WILD-TYPE 69 183 130 88
'RABEPK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S1041.  Gene #106: 'RABEPK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
RABEPK MUTATED 2 2 2
RABEPK WILD-TYPE 139 180 87
'RABEPK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S1042.  Gene #106: 'RABEPK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
RABEPK MUTATED 0 4 2
RABEPK WILD-TYPE 94 229 83
'CHGB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S1043.  Gene #107: 'CHGB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CHGB MUTATED 2 8 2 2
CHGB WILD-TYPE 63 202 70 129
'CHGB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S1044.  Gene #107: 'CHGB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CHGB MUTATED 3 3 6
CHGB WILD-TYPE 128 135 155
'CHGB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S1045.  Gene #107: 'CHGB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
CHGB MUTATED 1 1 2
CHGB WILD-TYPE 41 70 61
'CHGB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.95

Table S1046.  Gene #107: 'CHGB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
CHGB MUTATED 1 0 0 1 2
CHGB WILD-TYPE 38 32 43 29 30
'CHGB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0599 (Fisher's exact test), Q value = 0.62

Table S1047.  Gene #107: 'CHGB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CHGB MUTATED 1 9 4
CHGB WILD-TYPE 149 176 139
'CHGB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.73

Table S1048.  Gene #107: 'CHGB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CHGB MUTATED 0 8 3 0 1 1 1
CHGB WILD-TYPE 72 101 87 44 48 45 67
'CHGB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0441 (Fisher's exact test), Q value = 0.6

Table S1049.  Gene #107: 'CHGB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CHGB MUTATED 2 11 1
CHGB WILD-TYPE 173 200 89

Figure S146.  Get High-res Image Gene #107: 'CHGB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CHGB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.93

Table S1050.  Gene #107: 'CHGB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CHGB MUTATED 2 8 1 3
CHGB WILD-TYPE 68 178 130 86
'CHGB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S1051.  Gene #107: 'CHGB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CHGB MUTATED 2 6 3
CHGB WILD-TYPE 139 176 86
'CHGB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S1052.  Gene #107: 'CHGB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CHGB MUTATED 2 8 1
CHGB WILD-TYPE 92 225 84
'ESYT3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S1053.  Gene #108: 'ESYT3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ESYT3 MUTATED 0 5 1 2
ESYT3 WILD-TYPE 65 205 71 129
'ESYT3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.98

Table S1054.  Gene #108: 'ESYT3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ESYT3 MUTATED 4 1 2
ESYT3 WILD-TYPE 127 137 159
'ESYT3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S1055.  Gene #108: 'ESYT3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ESYT3 MUTATED 2 5 1
ESYT3 WILD-TYPE 148 180 142
'ESYT3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S1056.  Gene #108: 'ESYT3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ESYT3 MUTATED 1 3 1 1 0 2 0
ESYT3 WILD-TYPE 71 106 89 43 49 44 68
'ESYT3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S1057.  Gene #108: 'ESYT3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ESYT3 MUTATED 3 5 0
ESYT3 WILD-TYPE 172 206 90
'ESYT3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 0.97

Table S1058.  Gene #108: 'ESYT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ESYT3 MUTATED 0 5 3 0
ESYT3 WILD-TYPE 70 181 128 89
'ESYT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.9

Table S1059.  Gene #108: 'ESYT3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ESYT3 MUTATED 2 5 0
ESYT3 WILD-TYPE 139 177 89
'ESYT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S1060.  Gene #108: 'ESYT3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ESYT3 MUTATED 0 5 2
ESYT3 WILD-TYPE 94 228 83
'L1CAM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S1061.  Gene #109: 'L1CAM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
L1CAM MUTATED 0 1 1 1
L1CAM WILD-TYPE 5 6 4 2
'L1CAM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1062.  Gene #109: 'L1CAM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
L1CAM MUTATED 1 1 1
L1CAM WILD-TYPE 6 8 3
'L1CAM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.95

Table S1063.  Gene #109: 'L1CAM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
L1CAM MUTATED 3 17 2 12
L1CAM WILD-TYPE 62 193 70 119
'L1CAM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S1064.  Gene #109: 'L1CAM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
L1CAM MUTATED 11 9 13
L1CAM WILD-TYPE 120 129 148
'L1CAM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S1065.  Gene #109: 'L1CAM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
L1CAM MUTATED 3 8 3
L1CAM WILD-TYPE 39 63 60
'L1CAM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S1066.  Gene #109: 'L1CAM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
L1CAM MUTATED 6 2 2 2 2
L1CAM WILD-TYPE 33 30 41 28 30
'L1CAM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S1067.  Gene #109: 'L1CAM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
L1CAM MUTATED 9 16 9
L1CAM WILD-TYPE 141 169 134
'L1CAM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S1068.  Gene #109: 'L1CAM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
L1CAM MUTATED 4 12 5 3 2 4 4
L1CAM WILD-TYPE 68 97 85 41 47 42 64
'L1CAM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S1069.  Gene #109: 'L1CAM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
L1CAM MUTATED 15 15 4
L1CAM WILD-TYPE 160 196 86
'L1CAM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S1070.  Gene #109: 'L1CAM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
L1CAM MUTATED 8 11 8 7
L1CAM WILD-TYPE 62 175 123 82
'L1CAM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.73

Table S1071.  Gene #109: 'L1CAM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
L1CAM MUTATED 16 10 5
L1CAM WILD-TYPE 125 172 84
'L1CAM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S1072.  Gene #109: 'L1CAM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
L1CAM MUTATED 6 18 7
L1CAM WILD-TYPE 88 215 78
'SLC17A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.91

Table S1073.  Gene #110: 'SLC17A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SLC17A3 MUTATED 1 4 4 6
SLC17A3 WILD-TYPE 64 206 68 125
'SLC17A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.83

Table S1074.  Gene #110: 'SLC17A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SLC17A3 MUTATED 3 8 3
SLC17A3 WILD-TYPE 128 130 158
'SLC17A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.84

Table S1075.  Gene #110: 'SLC17A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SLC17A3 MUTATED 0 2 4
SLC17A3 WILD-TYPE 42 69 59
'SLC17A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 0.89

Table S1076.  Gene #110: 'SLC17A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SLC17A3 MUTATED 0 1 3 2 0
SLC17A3 WILD-TYPE 39 31 40 28 32
'SLC17A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00979 (Fisher's exact test), Q value = 0.33

Table S1077.  Gene #110: 'SLC17A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SLC17A3 MUTATED 0 9 6
SLC17A3 WILD-TYPE 150 176 137

Figure S147.  Get High-res Image Gene #110: 'SLC17A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SLC17A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.73

Table S1078.  Gene #110: 'SLC17A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SLC17A3 MUTATED 0 4 6 0 1 3 1
SLC17A3 WILD-TYPE 72 105 84 44 48 43 67
'SLC17A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.9

Table S1079.  Gene #110: 'SLC17A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SLC17A3 MUTATED 3 10 2
SLC17A3 WILD-TYPE 172 201 88
'SLC17A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00877 (Fisher's exact test), Q value = 0.33

Table S1080.  Gene #110: 'SLC17A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SLC17A3 MUTATED 2 4 1 8
SLC17A3 WILD-TYPE 68 182 130 81

Figure S148.  Get High-res Image Gene #110: 'SLC17A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SLC17A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.82

Table S1081.  Gene #110: 'SLC17A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SLC17A3 MUTATED 3 5 6
SLC17A3 WILD-TYPE 138 177 83
'SLC17A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0367 (Fisher's exact test), Q value = 0.57

Table S1082.  Gene #110: 'SLC17A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SLC17A3 MUTATED 0 12 2
SLC17A3 WILD-TYPE 94 221 83

Figure S149.  Get High-res Image Gene #110: 'SLC17A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ITIH2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.78

Table S1083.  Gene #111: 'ITIH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
ITIH2 MUTATED 0 3 0 0
ITIH2 WILD-TYPE 5 4 5 3
'ITIH2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1084.  Gene #111: 'ITIH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
ITIH2 MUTATED 1 2 0
ITIH2 WILD-TYPE 6 7 4
'ITIH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0585 (Fisher's exact test), Q value = 0.62

Table S1085.  Gene #111: 'ITIH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ITIH2 MUTATED 3 6 7 3
ITIH2 WILD-TYPE 62 204 65 128
'ITIH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.83

Table S1086.  Gene #111: 'ITIH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ITIH2 MUTATED 2 8 7
ITIH2 WILD-TYPE 129 130 154
'ITIH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1087.  Gene #111: 'ITIH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ITIH2 MUTATED 1 2 2
ITIH2 WILD-TYPE 41 69 61
'ITIH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S1088.  Gene #111: 'ITIH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ITIH2 MUTATED 2 1 1 1 0
ITIH2 WILD-TYPE 37 31 42 29 32
'ITIH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S1089.  Gene #111: 'ITIH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ITIH2 MUTATED 4 9 6
ITIH2 WILD-TYPE 146 176 137
'ITIH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S1090.  Gene #111: 'ITIH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ITIH2 MUTATED 1 7 5 1 1 3 1
ITIH2 WILD-TYPE 71 102 85 43 48 43 67
'ITIH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.97

Table S1091.  Gene #111: 'ITIH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ITIH2 MUTATED 4 11 4
ITIH2 WILD-TYPE 171 200 86
'ITIH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S1092.  Gene #111: 'ITIH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ITIH2 MUTATED 2 8 3 6
ITIH2 WILD-TYPE 68 178 128 83
'ITIH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S1093.  Gene #111: 'ITIH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ITIH2 MUTATED 4 9 3
ITIH2 WILD-TYPE 137 173 86
'ITIH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00628 (Fisher's exact test), Q value = 0.28

Table S1094.  Gene #111: 'ITIH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ITIH2 MUTATED 1 15 0
ITIH2 WILD-TYPE 93 218 85

Figure S150.  Get High-res Image Gene #111: 'ITIH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HP1BP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.83

Table S1095.  Gene #112: 'HP1BP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
HP1BP3 MUTATED 2 2 3 2
HP1BP3 WILD-TYPE 63 208 69 129
'HP1BP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1096.  Gene #112: 'HP1BP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
HP1BP3 MUTATED 2 2 3
HP1BP3 WILD-TYPE 129 136 158
'HP1BP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S1097.  Gene #112: 'HP1BP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
HP1BP3 MUTATED 0 3 2
HP1BP3 WILD-TYPE 42 68 61
'HP1BP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1098.  Gene #112: 'HP1BP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
HP1BP3 MUTATED 1 1 1 1 1
HP1BP3 WILD-TYPE 38 31 42 29 31
'HP1BP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0441 (Fisher's exact test), Q value = 0.6

Table S1099.  Gene #112: 'HP1BP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
HP1BP3 MUTATED 0 4 5
HP1BP3 WILD-TYPE 150 181 138

Figure S151.  Get High-res Image Gene #112: 'HP1BP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HP1BP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0222 (Fisher's exact test), Q value = 0.47

Table S1100.  Gene #112: 'HP1BP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
HP1BP3 MUTATED 0 2 1 0 4 2 0
HP1BP3 WILD-TYPE 72 107 89 44 45 44 68

Figure S152.  Get High-res Image Gene #112: 'HP1BP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HP1BP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 0.36

Table S1101.  Gene #112: 'HP1BP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
HP1BP3 MUTATED 0 8 1
HP1BP3 WILD-TYPE 175 203 89

Figure S153.  Get High-res Image Gene #112: 'HP1BP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HP1BP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0286 (Fisher's exact test), Q value = 0.53

Table S1102.  Gene #112: 'HP1BP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
HP1BP3 MUTATED 1 3 0 5
HP1BP3 WILD-TYPE 69 183 131 84

Figure S154.  Get High-res Image Gene #112: 'HP1BP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HP1BP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.73

Table S1103.  Gene #112: 'HP1BP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
HP1BP3 MUTATED 0 5 1
HP1BP3 WILD-TYPE 141 177 88
'HP1BP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.78

Table S1104.  Gene #112: 'HP1BP3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
HP1BP3 MUTATED 0 6 0
HP1BP3 WILD-TYPE 94 227 85
'LAMA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00514 (Fisher's exact test), Q value = 0.25

Table S1105.  Gene #113: 'LAMA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
LAMA4 MUTATED 8 6 8 12
LAMA4 WILD-TYPE 57 204 64 119

Figure S155.  Get High-res Image Gene #113: 'LAMA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LAMA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.031

Table S1106.  Gene #113: 'LAMA4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
LAMA4 MUTATED 3 20 7
LAMA4 WILD-TYPE 128 118 154

Figure S156.  Get High-res Image Gene #113: 'LAMA4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'LAMA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S1107.  Gene #113: 'LAMA4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
LAMA4 MUTATED 3 4 3
LAMA4 WILD-TYPE 39 67 60
'LAMA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S1108.  Gene #113: 'LAMA4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
LAMA4 MUTATED 1 1 5 2 1
LAMA4 WILD-TYPE 38 31 38 28 31
'LAMA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.96

Table S1109.  Gene #113: 'LAMA4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
LAMA4 MUTATED 7 14 13
LAMA4 WILD-TYPE 143 171 130
'LAMA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.79

Table S1110.  Gene #113: 'LAMA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
LAMA4 MUTATED 3 6 13 3 4 3 2
LAMA4 WILD-TYPE 69 103 77 41 45 43 66
'LAMA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0554 (Fisher's exact test), Q value = 0.62

Table S1111.  Gene #113: 'LAMA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
LAMA4 MUTATED 8 22 4
LAMA4 WILD-TYPE 167 189 86
'LAMA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0174 (Fisher's exact test), Q value = 0.41

Table S1112.  Gene #113: 'LAMA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
LAMA4 MUTATED 4 13 4 13
LAMA4 WILD-TYPE 66 173 127 76

Figure S157.  Get High-res Image Gene #113: 'LAMA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LAMA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0556 (Fisher's exact test), Q value = 0.62

Table S1113.  Gene #113: 'LAMA4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
LAMA4 MUTATED 5 19 6
LAMA4 WILD-TYPE 136 163 83
'LAMA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0314 (Fisher's exact test), Q value = 0.54

Table S1114.  Gene #113: 'LAMA4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
LAMA4 MUTATED 3 24 3
LAMA4 WILD-TYPE 91 209 82

Figure S158.  Get High-res Image Gene #113: 'LAMA4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TMCO2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.97

Table S1115.  Gene #114: 'TMCO2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
TMCO2 MUTATED 1 1 1 3
TMCO2 WILD-TYPE 64 209 71 128
'TMCO2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.95

Table S1116.  Gene #114: 'TMCO2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
TMCO2 MUTATED 0 3 3
TMCO2 WILD-TYPE 131 135 158
'TMCO2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S1117.  Gene #114: 'TMCO2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
TMCO2 MUTATED 1 3 2
TMCO2 WILD-TYPE 149 182 141
'TMCO2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.95

Table S1118.  Gene #114: 'TMCO2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
TMCO2 MUTATED 0 3 1 0 2 0 0
TMCO2 WILD-TYPE 72 106 89 44 47 46 68
'TMCO2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S1119.  Gene #114: 'TMCO2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
TMCO2 MUTATED 1 4 1
TMCO2 WILD-TYPE 174 207 89
'TMCO2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S1120.  Gene #114: 'TMCO2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
TMCO2 MUTATED 0 4 1 1
TMCO2 WILD-TYPE 70 182 130 88
'TMCO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.73

Table S1121.  Gene #114: 'TMCO2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
TMCO2 MUTATED 0 5 1
TMCO2 WILD-TYPE 141 177 88
'TMCO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.78

Table S1122.  Gene #114: 'TMCO2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
TMCO2 MUTATED 0 6 0
TMCO2 WILD-TYPE 94 227 85
'N4BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S1123.  Gene #115: 'N4BP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
N4BP1 MUTATED 0 4 3 2
N4BP1 WILD-TYPE 65 206 69 129
'N4BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S1124.  Gene #115: 'N4BP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
N4BP1 MUTATED 4 1 4
N4BP1 WILD-TYPE 127 137 157
'N4BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.73

Table S1125.  Gene #115: 'N4BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
N4BP1 MUTATED 4 5 0
N4BP1 WILD-TYPE 146 180 143
'N4BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S1126.  Gene #115: 'N4BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
N4BP1 MUTATED 1 2 3 0 0 0 3
N4BP1 WILD-TYPE 71 107 87 44 49 46 65
'N4BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S1127.  Gene #115: 'N4BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
N4BP1 MUTATED 4 5 0
N4BP1 WILD-TYPE 171 206 90
'N4BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0407 (Fisher's exact test), Q value = 0.58

Table S1128.  Gene #115: 'N4BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
N4BP1 MUTATED 0 1 4 4
N4BP1 WILD-TYPE 70 185 127 85

Figure S159.  Get High-res Image Gene #115: 'N4BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'N4BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S1129.  Gene #115: 'N4BP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
N4BP1 MUTATED 3 3 2
N4BP1 WILD-TYPE 138 179 87
'N4BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S1130.  Gene #115: 'N4BP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
N4BP1 MUTATED 1 6 1
N4BP1 WILD-TYPE 93 227 84
'MMP13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0704 (Fisher's exact test), Q value = 0.65

Table S1131.  Gene #116: 'MMP13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MMP13 MUTATED 4 2 2 5
MMP13 WILD-TYPE 61 208 70 126
'MMP13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S1132.  Gene #116: 'MMP13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MMP13 MUTATED 2 4 5
MMP13 WILD-TYPE 129 134 156
'MMP13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S1133.  Gene #116: 'MMP13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
MMP13 MUTATED 0 2 2
MMP13 WILD-TYPE 42 69 61
'MMP13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.83

Table S1134.  Gene #116: 'MMP13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
MMP13 MUTATED 0 1 3 0 0
MMP13 WILD-TYPE 39 31 40 30 32
'MMP13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.78

Table S1135.  Gene #116: 'MMP13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MMP13 MUTATED 1 7 5
MMP13 WILD-TYPE 149 178 138
'MMP13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0599 (Fisher's exact test), Q value = 0.62

Table S1136.  Gene #116: 'MMP13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MMP13 MUTATED 1 7 1 1 3 0 0
MMP13 WILD-TYPE 71 102 89 43 46 46 68
'MMP13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.93

Table S1137.  Gene #116: 'MMP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MMP13 MUTATED 3 9 1
MMP13 WILD-TYPE 172 202 89
'MMP13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.88

Table S1138.  Gene #116: 'MMP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MMP13 MUTATED 1 7 1 4
MMP13 WILD-TYPE 69 179 130 85
'MMP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S1139.  Gene #116: 'MMP13 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MMP13 MUTATED 2 5 3
MMP13 WILD-TYPE 139 177 86
'MMP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0805 (Fisher's exact test), Q value = 0.68

Table S1140.  Gene #116: 'MMP13 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MMP13 MUTATED 0 9 1
MMP13 WILD-TYPE 94 224 84
'ZACN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S1141.  Gene #117: 'ZACN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ZACN MUTATED 1 4 0 3
ZACN WILD-TYPE 64 206 72 128
'ZACN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S1142.  Gene #117: 'ZACN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ZACN MUTATED 2 2 4
ZACN WILD-TYPE 129 136 157
'ZACN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S1143.  Gene #117: 'ZACN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ZACN MUTATED 2 4 2
ZACN WILD-TYPE 148 181 141
'ZACN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S1144.  Gene #117: 'ZACN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ZACN MUTATED 1 3 0 1 1 0 2
ZACN WILD-TYPE 71 106 90 43 48 46 66
'ZACN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S1145.  Gene #117: 'ZACN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ZACN MUTATED 3 5 0
ZACN WILD-TYPE 172 206 90
'ZACN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.88

Table S1146.  Gene #117: 'ZACN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ZACN MUTATED 3 2 1 2
ZACN WILD-TYPE 67 184 130 87
'ZACN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0303 (Fisher's exact test), Q value = 0.53

Table S1147.  Gene #117: 'ZACN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ZACN MUTATED 0 7 1
ZACN WILD-TYPE 141 175 88

Figure S160.  Get High-res Image Gene #117: 'ZACN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ZACN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.95

Table S1148.  Gene #117: 'ZACN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ZACN MUTATED 3 5 0
ZACN WILD-TYPE 91 228 85
'SFTPB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.57

Table S1149.  Gene #118: 'SFTPB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SFTPB MUTATED 2 0 1 3
SFTPB WILD-TYPE 63 210 71 128

Figure S161.  Get High-res Image Gene #118: 'SFTPB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SFTPB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.88

Table S1150.  Gene #118: 'SFTPB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SFTPB MUTATED 0 2 4
SFTPB WILD-TYPE 131 136 157
'SFTPB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.92

Table S1151.  Gene #118: 'SFTPB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SFTPB MUTATED 2 4 0
SFTPB WILD-TYPE 148 181 143
'SFTPB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S1152.  Gene #118: 'SFTPB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SFTPB MUTATED 1 0 3 0 0 1 1
SFTPB WILD-TYPE 71 109 87 44 49 45 67
'SFTPB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.84

Table S1153.  Gene #118: 'SFTPB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SFTPB MUTATED 1 5 0
SFTPB WILD-TYPE 174 206 90
'SFTPB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S1154.  Gene #118: 'SFTPB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SFTPB MUTATED 0 3 1 2
SFTPB WILD-TYPE 70 183 130 87
'SFTPB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.88

Table S1155.  Gene #118: 'SFTPB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SFTPB MUTATED 0 4 1
SFTPB WILD-TYPE 141 178 88
'SFTPB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S1156.  Gene #118: 'SFTPB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SFTPB MUTATED 1 4 0
SFTPB WILD-TYPE 93 229 85
'SRRM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S1157.  Gene #119: 'SRRM3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SRRM3 MUTATED 1 3 1 0
SRRM3 WILD-TYPE 64 207 71 131
'SRRM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S1158.  Gene #119: 'SRRM3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SRRM3 MUTATED 1 1 3
SRRM3 WILD-TYPE 130 137 158
'SRRM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1159.  Gene #119: 'SRRM3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SRRM3 MUTATED 2 2 1
SRRM3 WILD-TYPE 148 183 142
'SRRM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S1160.  Gene #119: 'SRRM3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SRRM3 MUTATED 0 3 0 0 1 0 1
SRRM3 WILD-TYPE 72 106 90 44 48 46 67
'SRRM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S1161.  Gene #119: 'SRRM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SRRM3 MUTATED 1 3 1
SRRM3 WILD-TYPE 174 208 89
'SRRM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S1162.  Gene #119: 'SRRM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SRRM3 MUTATED 0 4 1 0
SRRM3 WILD-TYPE 70 182 130 89
'SRRM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0292 (Fisher's exact test), Q value = 0.53

Table S1163.  Gene #119: 'SRRM3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SRRM3 MUTATED 1 0 3
SRRM3 WILD-TYPE 140 182 86

Figure S162.  Get High-res Image Gene #119: 'SRRM3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SRRM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S1164.  Gene #119: 'SRRM3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SRRM3 MUTATED 0 3 1
SRRM3 WILD-TYPE 94 230 84
'FAM71A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S1165.  Gene #120: 'FAM71A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
FAM71A MUTATED 2 6 3 5
FAM71A WILD-TYPE 63 204 69 126
'FAM71A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S1166.  Gene #120: 'FAM71A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
FAM71A MUTATED 3 5 5
FAM71A WILD-TYPE 128 133 156
'FAM71A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S1167.  Gene #120: 'FAM71A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
FAM71A MUTATED 0 3 3
FAM71A WILD-TYPE 42 68 60
'FAM71A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.85

Table S1168.  Gene #120: 'FAM71A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
FAM71A MUTATED 1 1 4 0 0
FAM71A WILD-TYPE 38 31 39 30 32
'FAM71A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0573 (Fisher's exact test), Q value = 0.62

Table S1169.  Gene #120: 'FAM71A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
FAM71A MUTATED 1 8 7
FAM71A WILD-TYPE 149 177 136
'FAM71A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00793 (Fisher's exact test), Q value = 0.32

Table S1170.  Gene #120: 'FAM71A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
FAM71A MUTATED 0 3 7 0 2 4 0
FAM71A WILD-TYPE 72 106 83 44 47 42 68

Figure S163.  Get High-res Image Gene #120: 'FAM71A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAM71A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.76

Table S1171.  Gene #120: 'FAM71A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
FAM71A MUTATED 2 10 3
FAM71A WILD-TYPE 173 201 87
'FAM71A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.77

Table S1172.  Gene #120: 'FAM71A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
FAM71A MUTATED 1 9 1 4
FAM71A WILD-TYPE 69 177 130 85
'FAM71A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.73

Table S1173.  Gene #120: 'FAM71A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
FAM71A MUTATED 1 7 4
FAM71A WILD-TYPE 140 175 85
'FAM71A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0385 (Fisher's exact test), Q value = 0.58

Table S1174.  Gene #120: 'FAM71A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
FAM71A MUTATED 1 11 0
FAM71A WILD-TYPE 93 222 85

Figure S164.  Get High-res Image Gene #120: 'FAM71A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MCM9 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1175.  Gene #121: 'MCM9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MCM9 MUTATED 0 2 0 1
MCM9 WILD-TYPE 65 208 72 130
'MCM9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S1176.  Gene #121: 'MCM9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MCM9 MUTATED 0 2 1
MCM9 WILD-TYPE 150 183 142
'MCM9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S1177.  Gene #121: 'MCM9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MCM9 MUTATED 0 1 1 1 0 0 0
MCM9 WILD-TYPE 72 108 89 43 49 46 68
'MCM9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1178.  Gene #121: 'MCM9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MCM9 MUTATED 1 2 0
MCM9 WILD-TYPE 174 209 90
'MCM9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S1179.  Gene #121: 'MCM9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MCM9 MUTATED 1 2 0 0
MCM9 WILD-TYPE 69 184 131 89
'GRAP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S1180.  Gene #122: 'GRAP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
GRAP2 MUTATED 2 3 1 5
GRAP2 WILD-TYPE 63 207 71 126
'GRAP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.97

Table S1181.  Gene #122: 'GRAP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
GRAP2 MUTATED 2 6 3
GRAP2 WILD-TYPE 129 132 158
'GRAP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S1182.  Gene #122: 'GRAP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
GRAP2 MUTATED 0 2 1
GRAP2 WILD-TYPE 42 69 62
'GRAP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S1183.  Gene #122: 'GRAP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
GRAP2 MUTATED 1 0 2 0 0
GRAP2 WILD-TYPE 38 32 41 30 32
'GRAP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 0.53

Table S1184.  Gene #122: 'GRAP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
GRAP2 MUTATED 3 1 7
GRAP2 WILD-TYPE 147 184 136

Figure S165.  Get High-res Image Gene #122: 'GRAP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GRAP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S1185.  Gene #122: 'GRAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
GRAP2 MUTATED 0 2 3 2 1 1 2
GRAP2 WILD-TYPE 72 107 87 42 48 45 66
'GRAP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1186.  Gene #122: 'GRAP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
GRAP2 MUTATED 4 5 2
GRAP2 WILD-TYPE 171 206 88
'GRAP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S1187.  Gene #122: 'GRAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
GRAP2 MUTATED 2 3 2 4
GRAP2 WILD-TYPE 68 183 129 85
'GRAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S1188.  Gene #122: 'GRAP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
GRAP2 MUTATED 3 5 3
GRAP2 WILD-TYPE 138 177 86
'GRAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.97

Table S1189.  Gene #122: 'GRAP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
GRAP2 MUTATED 1 9 1
GRAP2 WILD-TYPE 93 224 84
'ARHGAP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S1190.  Gene #123: 'ARHGAP4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ARHGAP4 MUTATED 2 4 3 5
ARHGAP4 WILD-TYPE 63 206 69 126
'ARHGAP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S1191.  Gene #123: 'ARHGAP4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ARHGAP4 MUTATED 3 7 4
ARHGAP4 WILD-TYPE 128 131 157
'ARHGAP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.76

Table S1192.  Gene #123: 'ARHGAP4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ARHGAP4 MUTATED 1 0 3
ARHGAP4 WILD-TYPE 41 71 60
'ARHGAP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S1193.  Gene #123: 'ARHGAP4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ARHGAP4 MUTATED 0 2 1 0 1
ARHGAP4 WILD-TYPE 39 30 42 30 31
'ARHGAP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S1194.  Gene #123: 'ARHGAP4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ARHGAP4 MUTATED 4 5 5
ARHGAP4 WILD-TYPE 146 180 138
'ARHGAP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.96

Table S1195.  Gene #123: 'ARHGAP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ARHGAP4 MUTATED 1 4 6 1 1 1 0
ARHGAP4 WILD-TYPE 71 105 84 43 48 45 68
'ARHGAP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S1196.  Gene #123: 'ARHGAP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ARHGAP4 MUTATED 4 7 3
ARHGAP4 WILD-TYPE 171 204 87
'ARHGAP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.94

Table S1197.  Gene #123: 'ARHGAP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ARHGAP4 MUTATED 3 7 1 3
ARHGAP4 WILD-TYPE 67 179 130 86
'ARHGAP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1198.  Gene #123: 'ARHGAP4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ARHGAP4 MUTATED 4 6 3
ARHGAP4 WILD-TYPE 137 176 86
'ARHGAP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S1199.  Gene #123: 'ARHGAP4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ARHGAP4 MUTATED 1 8 4
ARHGAP4 WILD-TYPE 93 225 81
'IFI35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S1200.  Gene #124: 'IFI35 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
IFI35 MUTATED 1 2 0 0
IFI35 WILD-TYPE 64 208 72 131
'IFI35 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S1201.  Gene #124: 'IFI35 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
IFI35 MUTATED 1 0 2
IFI35 WILD-TYPE 130 138 159
'IFI35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.73

Table S1202.  Gene #124: 'IFI35 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
IFI35 MUTATED 0 3 0
IFI35 WILD-TYPE 150 182 143
'IFI35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.94

Table S1203.  Gene #124: 'IFI35 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
IFI35 MUTATED 0 3 0 0 0 0 0
IFI35 WILD-TYPE 72 106 90 44 49 46 68
'IFI35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S1204.  Gene #124: 'IFI35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
IFI35 MUTATED 2 1 0
IFI35 WILD-TYPE 173 210 90
'IFI35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S1205.  Gene #124: 'IFI35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
IFI35 MUTATED 1 1 1 0
IFI35 WILD-TYPE 69 185 130 89
'IFI35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.96

Table S1206.  Gene #124: 'IFI35 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
IFI35 MUTATED 0 3 0
IFI35 WILD-TYPE 141 179 89
'IFI35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S1207.  Gene #124: 'IFI35 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
IFI35 MUTATED 0 3 0
IFI35 WILD-TYPE 94 230 85
'CDK12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0426 (Fisher's exact test), Q value = 0.59

Table S1208.  Gene #125: 'CDK12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CDK12 MUTATED 4 2 3 6
CDK12 WILD-TYPE 61 208 69 125

Figure S166.  Get High-res Image Gene #125: 'CDK12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDK12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00213 (Fisher's exact test), Q value = 0.16

Table S1209.  Gene #125: 'CDK12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CDK12 MUTATED 1 9 1
CDK12 WILD-TYPE 130 129 160

Figure S167.  Get High-res Image Gene #125: 'CDK12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CDK12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S1210.  Gene #125: 'CDK12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
CDK12 MUTATED 0 1 2
CDK12 WILD-TYPE 42 70 61
'CDK12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1211.  Gene #125: 'CDK12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
CDK12 MUTATED 0 0 2 1 0
CDK12 WILD-TYPE 39 32 41 29 32
'CDK12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.93

Table S1212.  Gene #125: 'CDK12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CDK12 MUTATED 2 8 5
CDK12 WILD-TYPE 148 177 138
'CDK12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.75

Table S1213.  Gene #125: 'CDK12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CDK12 MUTATED 1 5 3 0 2 4 0
CDK12 WILD-TYPE 71 104 87 44 47 42 68
'CDK12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S1214.  Gene #125: 'CDK12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CDK12 MUTATED 3 9 3
CDK12 WILD-TYPE 172 202 87
'CDK12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.84

Table S1215.  Gene #125: 'CDK12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CDK12 MUTATED 0 7 3 5
CDK12 WILD-TYPE 70 179 128 84
'CDK12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S1216.  Gene #125: 'CDK12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CDK12 MUTATED 3 5 3
CDK12 WILD-TYPE 138 177 86
'CDK12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 0.34

Table S1217.  Gene #125: 'CDK12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CDK12 MUTATED 0 11 0
CDK12 WILD-TYPE 94 222 85

Figure S168.  Get High-res Image Gene #125: 'CDK12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TMEM202 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1218.  Gene #126: 'TMEM202 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
TMEM202 MUTATED 1 3 1 1
TMEM202 WILD-TYPE 64 207 71 130
'TMEM202 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S1219.  Gene #126: 'TMEM202 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
TMEM202 MUTATED 2 3 1
TMEM202 WILD-TYPE 129 135 160
'TMEM202 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1220.  Gene #126: 'TMEM202 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
TMEM202 MUTATED 1 3 2
TMEM202 WILD-TYPE 149 182 141
'TMEM202 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S1221.  Gene #126: 'TMEM202 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
TMEM202 MUTATED 0 1 2 1 1 1 0
TMEM202 WILD-TYPE 72 108 88 43 48 45 68
'TMEM202 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S1222.  Gene #126: 'TMEM202 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
TMEM202 MUTATED 3 3 0
TMEM202 WILD-TYPE 172 208 90
'TMEM202 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.94

Table S1223.  Gene #126: 'TMEM202 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
TMEM202 MUTATED 2 1 1 2
TMEM202 WILD-TYPE 68 185 130 87
'TMEM202 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S1224.  Gene #126: 'TMEM202 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
TMEM202 MUTATED 3 2 1
TMEM202 WILD-TYPE 138 180 88
'TMEM202 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1225.  Gene #126: 'TMEM202 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
TMEM202 MUTATED 1 4 1
TMEM202 WILD-TYPE 93 229 84
'GTF2A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S1226.  Gene #127: 'GTF2A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
GTF2A1 MUTATED 1 1 0 1
GTF2A1 WILD-TYPE 64 209 72 130
'GTF2A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1227.  Gene #127: 'GTF2A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
GTF2A1 MUTATED 1 1 1
GTF2A1 WILD-TYPE 130 137 160
'GTF2A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S1228.  Gene #127: 'GTF2A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
GTF2A1 MUTATED 0 1 2
GTF2A1 WILD-TYPE 150 184 141
'GTF2A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.86

Table S1229.  Gene #127: 'GTF2A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
GTF2A1 MUTATED 0 0 2 1 0 0 0
GTF2A1 WILD-TYPE 72 109 88 43 49 46 68
'GTF2A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1230.  Gene #127: 'GTF2A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
GTF2A1 MUTATED 1 2 0
GTF2A1 WILD-TYPE 174 209 90
'GTF2A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S1231.  Gene #127: 'GTF2A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
GTF2A1 MUTATED 1 1 0 1
GTF2A1 WILD-TYPE 69 185 131 88
'GTF2A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S1232.  Gene #127: 'GTF2A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
GTF2A1 MUTATED 2 1 0
GTF2A1 WILD-TYPE 139 181 89
'GTF2A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1233.  Gene #127: 'GTF2A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
GTF2A1 MUTATED 1 2 0
GTF2A1 WILD-TYPE 93 231 85
'SERPINB13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.85

Table S1234.  Gene #128: 'SERPINB13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SERPINB13 MUTATED 3 2 2 3
SERPINB13 WILD-TYPE 62 208 70 128
'SERPINB13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S1235.  Gene #128: 'SERPINB13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SERPINB13 MUTATED 3 1 2
SERPINB13 WILD-TYPE 128 137 159
'SERPINB13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S1236.  Gene #128: 'SERPINB13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SERPINB13 MUTATED 1 3 4
SERPINB13 WILD-TYPE 41 68 59
'SERPINB13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.96

Table S1237.  Gene #128: 'SERPINB13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SERPINB13 MUTATED 0 2 2 3 1
SERPINB13 WILD-TYPE 39 30 41 27 31
'SERPINB13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.88

Table S1238.  Gene #128: 'SERPINB13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SERPINB13 MUTATED 1 6 3
SERPINB13 WILD-TYPE 149 179 140
'SERPINB13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.99

Table S1239.  Gene #128: 'SERPINB13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SERPINB13 MUTATED 1 4 1 0 2 2 0
SERPINB13 WILD-TYPE 71 105 89 44 47 44 68
'SERPINB13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.84

Table S1240.  Gene #128: 'SERPINB13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SERPINB13 MUTATED 1 5 3
SERPINB13 WILD-TYPE 174 206 87
'SERPINB13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.94

Table S1241.  Gene #128: 'SERPINB13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SERPINB13 MUTATED 0 5 1 3
SERPINB13 WILD-TYPE 70 181 130 86
'SERPINB13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0537 (Fisher's exact test), Q value = 0.62

Table S1242.  Gene #128: 'SERPINB13 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SERPINB13 MUTATED 1 1 4
SERPINB13 WILD-TYPE 140 181 85
'SERPINB13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S1243.  Gene #128: 'SERPINB13 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SERPINB13 MUTATED 0 4 2
SERPINB13 WILD-TYPE 94 229 83
'RAMP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S1244.  Gene #129: 'RAMP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
RAMP2 MUTATED 0 2 1 0
RAMP2 WILD-TYPE 65 208 71 131
'RAMP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1245.  Gene #129: 'RAMP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
RAMP2 MUTATED 1 2 0
RAMP2 WILD-TYPE 149 183 143
'RAMP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.96

Table S1246.  Gene #129: 'RAMP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
RAMP2 MUTATED 1 0 0 0 0 1 1
RAMP2 WILD-TYPE 71 109 90 44 49 45 67
'RAMP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1247.  Gene #129: 'RAMP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
RAMP2 MUTATED 1 2 0
RAMP2 WILD-TYPE 174 209 90
'RAMP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.98

Table S1248.  Gene #129: 'RAMP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
RAMP2 MUTATED 0 3 0 0
RAMP2 WILD-TYPE 70 183 131 89
'RNASEH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S1249.  Gene #130: 'RNASEH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
RNASEH1 MUTATED 0 3 0 3
RNASEH1 WILD-TYPE 65 207 72 128
'RNASEH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.88

Table S1250.  Gene #130: 'RNASEH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
RNASEH1 MUTATED 0 2 4
RNASEH1 WILD-TYPE 131 136 157
'RNASEH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S1251.  Gene #130: 'RNASEH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
RNASEH1 MUTATED 1 3 2
RNASEH1 WILD-TYPE 149 182 141
'RNASEH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S1252.  Gene #130: 'RNASEH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
RNASEH1 MUTATED 0 3 1 0 1 1 0
RNASEH1 WILD-TYPE 72 106 89 44 48 45 68
'RNASEH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.73

Table S1253.  Gene #130: 'RNASEH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
RNASEH1 MUTATED 0 4 2
RNASEH1 WILD-TYPE 175 207 88
'RNASEH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.73

Table S1254.  Gene #130: 'RNASEH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
RNASEH1 MUTATED 0 3 0 3
RNASEH1 WILD-TYPE 70 183 131 86
'RNASEH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S1255.  Gene #130: 'RNASEH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
RNASEH1 MUTATED 2 2 2
RNASEH1 WILD-TYPE 139 180 87
'RNASEH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S1256.  Gene #130: 'RNASEH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
RNASEH1 MUTATED 0 5 1
RNASEH1 WILD-TYPE 94 228 84
'GLTSCR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.78

Table S1257.  Gene #131: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
GLTSCR1 MUTATED 2 1 1 4
GLTSCR1 WILD-TYPE 63 209 71 127
'GLTSCR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.73

Table S1258.  Gene #131: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
GLTSCR1 MUTATED 0 3 5
GLTSCR1 WILD-TYPE 131 135 156
'GLTSCR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S1259.  Gene #131: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
GLTSCR1 MUTATED 1 1 2
GLTSCR1 WILD-TYPE 41 70 61
'GLTSCR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S1260.  Gene #131: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
GLTSCR1 MUTATED 0 1 2 0 1
GLTSCR1 WILD-TYPE 39 31 41 30 31
'GLTSCR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S1261.  Gene #131: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
GLTSCR1 MUTATED 1 4 3
GLTSCR1 WILD-TYPE 149 181 140
'GLTSCR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S1262.  Gene #131: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
GLTSCR1 MUTATED 0 3 2 0 1 1 1
GLTSCR1 WILD-TYPE 72 106 88 44 48 45 67
'GLTSCR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.97

Table S1263.  Gene #131: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
GLTSCR1 MUTATED 1 5 2
GLTSCR1 WILD-TYPE 174 206 88
'GLTSCR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.73

Table S1264.  Gene #131: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
GLTSCR1 MUTATED 1 6 0 1
GLTSCR1 WILD-TYPE 69 180 131 88
'GLTSCR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.95

Table S1265.  Gene #131: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
GLTSCR1 MUTATED 4 4 0
GLTSCR1 WILD-TYPE 137 178 89
'GLTSCR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S1266.  Gene #131: 'GLTSCR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
GLTSCR1 MUTATED 1 5 2
GLTSCR1 WILD-TYPE 93 228 83
'PDE1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S1267.  Gene #132: 'PDE1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PDE1A MUTATED 2 6 3 4
PDE1A WILD-TYPE 63 204 69 127
'PDE1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.85

Table S1268.  Gene #132: 'PDE1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PDE1A MUTATED 1 6 5
PDE1A WILD-TYPE 130 132 156
'PDE1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S1269.  Gene #132: 'PDE1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
PDE1A MUTATED 2 4 2
PDE1A WILD-TYPE 40 67 61
'PDE1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 1

Table S1270.  Gene #132: 'PDE1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
PDE1A MUTATED 2 0 1 3 2
PDE1A WILD-TYPE 37 32 42 27 30
'PDE1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.95

Table S1271.  Gene #132: 'PDE1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PDE1A MUTATED 2 7 6
PDE1A WILD-TYPE 148 178 137
'PDE1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S1272.  Gene #132: 'PDE1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PDE1A MUTATED 0 3 4 1 2 3 2
PDE1A WILD-TYPE 72 106 86 43 47 43 66
'PDE1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S1273.  Gene #132: 'PDE1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PDE1A MUTATED 4 9 2
PDE1A WILD-TYPE 171 202 88
'PDE1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S1274.  Gene #132: 'PDE1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PDE1A MUTATED 2 6 2 5
PDE1A WILD-TYPE 68 180 129 84
'PDE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S1275.  Gene #132: 'PDE1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PDE1A MUTATED 6 5 1
PDE1A WILD-TYPE 135 177 88
'PDE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S1276.  Gene #132: 'PDE1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PDE1A MUTATED 2 9 1
PDE1A WILD-TYPE 92 224 84
'SATB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.83

Table S1277.  Gene #133: 'SATB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SATB2 MUTATED 3 10 4 14
SATB2 WILD-TYPE 62 200 68 117
'SATB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S1278.  Gene #133: 'SATB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SATB2 MUTATED 7 8 10
SATB2 WILD-TYPE 124 130 151
'SATB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S1279.  Gene #133: 'SATB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SATB2 MUTATED 1 3 4
SATB2 WILD-TYPE 41 68 59
'SATB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 0.97

Table S1280.  Gene #133: 'SATB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SATB2 MUTATED 0 1 4 1 2
SATB2 WILD-TYPE 39 31 39 29 30
'SATB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00075 (Fisher's exact test), Q value = 0.08

Table S1281.  Gene #133: 'SATB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SATB2 MUTATED 6 22 3
SATB2 WILD-TYPE 144 163 140

Figure S169.  Get High-res Image Gene #133: 'SATB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SATB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0191 (Fisher's exact test), Q value = 0.43

Table S1282.  Gene #133: 'SATB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SATB2 MUTATED 2 15 7 0 2 1 4
SATB2 WILD-TYPE 70 94 83 44 47 45 64

Figure S170.  Get High-res Image Gene #133: 'SATB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SATB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S1283.  Gene #133: 'SATB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SATB2 MUTATED 8 15 7
SATB2 WILD-TYPE 167 196 83
'SATB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.95

Table S1284.  Gene #133: 'SATB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SATB2 MUTATED 5 11 5 9
SATB2 WILD-TYPE 65 175 126 80
'SATB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.83

Table S1285.  Gene #133: 'SATB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SATB2 MUTATED 6 9 9
SATB2 WILD-TYPE 135 173 80
'SATB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.73

Table S1286.  Gene #133: 'SATB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SATB2 MUTATED 2 14 8
SATB2 WILD-TYPE 92 219 77
'RAF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1287.  Gene #134: 'RAF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
RAF1 MUTATED 0 3 1 2
RAF1 WILD-TYPE 65 207 71 129
'RAF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1288.  Gene #134: 'RAF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
RAF1 MUTATED 2 2 2
RAF1 WILD-TYPE 129 136 159
'RAF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1289.  Gene #134: 'RAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
RAF1 MUTATED 1 3 2
RAF1 WILD-TYPE 149 182 141
'RAF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S1290.  Gene #134: 'RAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
RAF1 MUTATED 1 2 1 0 0 2 0
RAF1 WILD-TYPE 71 107 89 44 49 44 68
'RAF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1291.  Gene #134: 'RAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
RAF1 MUTATED 2 3 1
RAF1 WILD-TYPE 173 208 89
'RAF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.86

Table S1292.  Gene #134: 'RAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
RAF1 MUTATED 1 1 1 3
RAF1 WILD-TYPE 69 185 130 86
'RAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0437 (Fisher's exact test), Q value = 0.6

Table S1293.  Gene #134: 'RAF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
RAF1 MUTATED 4 0 2
RAF1 WILD-TYPE 137 182 87

Figure S171.  Get High-res Image Gene #134: 'RAF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0243 (Fisher's exact test), Q value = 0.5

Table S1294.  Gene #134: 'RAF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
RAF1 MUTATED 0 2 4
RAF1 WILD-TYPE 94 231 81

Figure S172.  Get High-res Image Gene #134: 'RAF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PLXND1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S1295.  Gene #135: 'PLXND1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PLXND1 MUTATED 3 6 2 4
PLXND1 WILD-TYPE 62 204 70 127
'PLXND1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S1296.  Gene #135: 'PLXND1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PLXND1 MUTATED 4 4 6
PLXND1 WILD-TYPE 127 134 155
'PLXND1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S1297.  Gene #135: 'PLXND1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
PLXND1 MUTATED 0 2 2
PLXND1 WILD-TYPE 42 69 61
'PLXND1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S1298.  Gene #135: 'PLXND1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
PLXND1 MUTATED 2 1 0 1 0
PLXND1 WILD-TYPE 37 31 43 29 32
'PLXND1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1299.  Gene #135: 'PLXND1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PLXND1 MUTATED 4 5 6
PLXND1 WILD-TYPE 146 180 137
'PLXND1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S1300.  Gene #135: 'PLXND1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PLXND1 MUTATED 1 6 4 1 2 1 0
PLXND1 WILD-TYPE 71 103 86 43 47 45 68
'PLXND1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S1301.  Gene #135: 'PLXND1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PLXND1 MUTATED 3 8 4
PLXND1 WILD-TYPE 172 203 86
'PLXND1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 0.88

Table S1302.  Gene #135: 'PLXND1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PLXND1 MUTATED 3 7 1 4
PLXND1 WILD-TYPE 67 179 130 85
'PLXND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1303.  Gene #135: 'PLXND1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PLXND1 MUTATED 4 6 3
PLXND1 WILD-TYPE 137 176 86
'PLXND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S1304.  Gene #135: 'PLXND1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PLXND1 MUTATED 2 10 1
PLXND1 WILD-TYPE 92 223 84
'OFD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0682 (Fisher's exact test), Q value = 0.65

Table S1305.  Gene #136: 'OFD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
OFD1 MUTATED 2 5 6 2
OFD1 WILD-TYPE 63 205 66 129
'OFD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S1306.  Gene #136: 'OFD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
OFD1 MUTATED 2 6 5
OFD1 WILD-TYPE 129 132 156
'OFD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1307.  Gene #136: 'OFD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
OFD1 MUTATED 1 2 1
OFD1 WILD-TYPE 41 69 62
'OFD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S1308.  Gene #136: 'OFD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
OFD1 MUTATED 0 0 2 1 1
OFD1 WILD-TYPE 39 32 41 29 31
'OFD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.95

Table S1309.  Gene #136: 'OFD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
OFD1 MUTATED 2 7 6
OFD1 WILD-TYPE 148 178 137
'OFD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.93

Table S1310.  Gene #136: 'OFD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
OFD1 MUTATED 2 2 5 2 1 3 0
OFD1 WILD-TYPE 70 107 85 42 48 43 68
'OFD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0656 (Fisher's exact test), Q value = 0.65

Table S1311.  Gene #136: 'OFD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
OFD1 MUTATED 2 11 2
OFD1 WILD-TYPE 173 200 88
'OFD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0165 (Fisher's exact test), Q value = 0.4

Table S1312.  Gene #136: 'OFD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
OFD1 MUTATED 2 7 0 6
OFD1 WILD-TYPE 68 179 131 83

Figure S173.  Get High-res Image Gene #136: 'OFD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'OFD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.83

Table S1313.  Gene #136: 'OFD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
OFD1 MUTATED 2 5 5
OFD1 WILD-TYPE 139 177 84
'OFD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.73

Table S1314.  Gene #136: 'OFD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
OFD1 MUTATED 2 10 0
OFD1 WILD-TYPE 92 223 85
'APLF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.85

Table S1315.  Gene #137: 'APLF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
APLF MUTATED 2 1 0 1
APLF WILD-TYPE 63 209 72 130
'APLF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1316.  Gene #137: 'APLF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
APLF MUTATED 1 1 2
APLF WILD-TYPE 130 137 159
'APLF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.9

Table S1317.  Gene #137: 'APLF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
APLF MUTATED 2 0 2
APLF WILD-TYPE 148 185 141
'APLF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.76

Table S1318.  Gene #137: 'APLF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
APLF MUTATED 1 0 0 0 2 0 1
APLF WILD-TYPE 71 109 90 44 47 46 67
'APLF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S1319.  Gene #137: 'APLF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
APLF MUTATED 1 3 0
APLF WILD-TYPE 174 208 90
'APLF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S1320.  Gene #137: 'APLF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
APLF MUTATED 0 1 2 1
APLF WILD-TYPE 70 185 129 88
'APLF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S1321.  Gene #137: 'APLF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
APLF MUTATED 1 1 2
APLF WILD-TYPE 140 181 87
'APLF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.95

Table S1322.  Gene #137: 'APLF MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
APLF MUTATED 0 2 2
APLF WILD-TYPE 94 231 83
'ADAMTS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.84

Table S1323.  Gene #138: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ADAMTS2 MUTATED 9 12 6 11
ADAMTS2 WILD-TYPE 56 198 66 120
'ADAMTS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00362 (Fisher's exact test), Q value = 0.22

Table S1324.  Gene #138: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ADAMTS2 MUTATED 3 12 20
ADAMTS2 WILD-TYPE 128 126 141

Figure S174.  Get High-res Image Gene #138: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ADAMTS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S1325.  Gene #138: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ADAMTS2 MUTATED 1 3 4
ADAMTS2 WILD-TYPE 41 68 59
'ADAMTS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0176 (Fisher's exact test), Q value = 0.41

Table S1326.  Gene #138: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ADAMTS2 MUTATED 0 1 6 0 1
ADAMTS2 WILD-TYPE 39 31 37 30 31

Figure S175.  Get High-res Image Gene #138: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ADAMTS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S1327.  Gene #138: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ADAMTS2 MUTATED 9 18 11
ADAMTS2 WILD-TYPE 141 167 132
'ADAMTS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S1328.  Gene #138: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ADAMTS2 MUTATED 5 10 7 4 6 3 3
ADAMTS2 WILD-TYPE 67 99 83 40 43 43 65
'ADAMTS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0806 (Fisher's exact test), Q value = 0.68

Table S1329.  Gene #138: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ADAMTS2 MUTATED 9 24 6
ADAMTS2 WILD-TYPE 166 187 84
'ADAMTS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0507 (Fisher's exact test), Q value = 0.62

Table S1330.  Gene #138: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ADAMTS2 MUTATED 8 21 5 5
ADAMTS2 WILD-TYPE 62 165 126 84
'ADAMTS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.73

Table S1331.  Gene #138: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ADAMTS2 MUTATED 6 19 6
ADAMTS2 WILD-TYPE 135 163 83
'ADAMTS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S1332.  Gene #138: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ADAMTS2 MUTATED 8 16 7
ADAMTS2 WILD-TYPE 86 217 78
'CAPN11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.84

Table S1333.  Gene #139: 'CAPN11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
CAPN11 MUTATED 0 1 1 2
CAPN11 WILD-TYPE 5 6 4 1
'CAPN11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 0.99

Table S1334.  Gene #139: 'CAPN11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
CAPN11 MUTATED 1 1 2
CAPN11 WILD-TYPE 6 8 2
'CAPN11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S1335.  Gene #139: 'CAPN11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CAPN11 MUTATED 2 3 2 5
CAPN11 WILD-TYPE 63 207 70 126
'CAPN11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S1336.  Gene #139: 'CAPN11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CAPN11 MUTATED 2 3 4
CAPN11 WILD-TYPE 129 135 157
'CAPN11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S1337.  Gene #139: 'CAPN11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
CAPN11 MUTATED 0 3 2
CAPN11 WILD-TYPE 42 68 61
'CAPN11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S1338.  Gene #139: 'CAPN11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
CAPN11 MUTATED 1 1 2 1 0
CAPN11 WILD-TYPE 38 31 41 29 32
'CAPN11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.34

Table S1339.  Gene #139: 'CAPN11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CAPN11 MUTATED 0 9 3
CAPN11 WILD-TYPE 150 176 140

Figure S176.  Get High-res Image Gene #139: 'CAPN11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CAPN11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0158 (Fisher's exact test), Q value = 0.4

Table S1340.  Gene #139: 'CAPN11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CAPN11 MUTATED 0 4 7 0 0 1 0
CAPN11 WILD-TYPE 72 105 83 44 49 45 68

Figure S177.  Get High-res Image Gene #139: 'CAPN11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CAPN11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.78

Table S1341.  Gene #139: 'CAPN11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CAPN11 MUTATED 2 9 1
CAPN11 WILD-TYPE 173 202 89
'CAPN11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0587 (Fisher's exact test), Q value = 0.62

Table S1342.  Gene #139: 'CAPN11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CAPN11 MUTATED 1 4 1 6
CAPN11 WILD-TYPE 69 182 130 83
'CAPN11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S1343.  Gene #139: 'CAPN11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CAPN11 MUTATED 2 3 3
CAPN11 WILD-TYPE 139 179 86
'CAPN11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.88

Table S1344.  Gene #139: 'CAPN11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CAPN11 MUTATED 0 7 1
CAPN11 WILD-TYPE 94 226 84
'FLCN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S1345.  Gene #140: 'FLCN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
FLCN MUTATED 1 5 0 4
FLCN WILD-TYPE 64 205 72 127
'FLCN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S1346.  Gene #140: 'FLCN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
FLCN MUTATED 1 3 5
FLCN WILD-TYPE 130 135 156
'FLCN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.73

Table S1347.  Gene #140: 'FLCN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
FLCN MUTATED 2 0 1
FLCN WILD-TYPE 40 71 62
'FLCN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S1348.  Gene #140: 'FLCN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
FLCN MUTATED 0 1 0 1 1
FLCN WILD-TYPE 39 31 43 29 31
'FLCN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S1349.  Gene #140: 'FLCN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
FLCN MUTATED 2 4 4
FLCN WILD-TYPE 148 181 139
'FLCN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S1350.  Gene #140: 'FLCN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
FLCN MUTATED 1 3 1 1 1 2 1
FLCN WILD-TYPE 71 106 89 43 48 44 67
'FLCN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S1351.  Gene #140: 'FLCN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
FLCN MUTATED 5 4 1
FLCN WILD-TYPE 170 207 89
'FLCN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S1352.  Gene #140: 'FLCN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
FLCN MUTATED 2 3 4 1
FLCN WILD-TYPE 68 183 127 88
'FLCN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.94

Table S1353.  Gene #140: 'FLCN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
FLCN MUTATED 4 5 0
FLCN WILD-TYPE 137 177 89
'FLCN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1354.  Gene #140: 'FLCN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
FLCN MUTATED 2 5 2
FLCN WILD-TYPE 92 228 83
'C2ORF53 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.056 (Fisher's exact test), Q value = 0.62

Table S1355.  Gene #141: 'C2ORF53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
C2ORF53 MUTATED 1 2 4 6
C2ORF53 WILD-TYPE 64 208 68 125
'C2ORF53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S1356.  Gene #141: 'C2ORF53 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
C2ORF53 MUTATED 2 4 6
C2ORF53 WILD-TYPE 129 134 155
'C2ORF53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S1357.  Gene #141: 'C2ORF53 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
C2ORF53 MUTATED 0 1 2
C2ORF53 WILD-TYPE 42 70 61
'C2ORF53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S1358.  Gene #141: 'C2ORF53 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
C2ORF53 MUTATED 0 0 2 1 0
C2ORF53 WILD-TYPE 39 32 41 29 32
'C2ORF53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.99

Table S1359.  Gene #141: 'C2ORF53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
C2ORF53 MUTATED 2 7 4
C2ORF53 WILD-TYPE 148 178 139
'C2ORF53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.88

Table S1360.  Gene #141: 'C2ORF53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
C2ORF53 MUTATED 2 6 4 0 1 0 0
C2ORF53 WILD-TYPE 70 103 86 44 48 46 68
'C2ORF53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.93

Table S1361.  Gene #141: 'C2ORF53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
C2ORF53 MUTATED 3 9 1
C2ORF53 WILD-TYPE 172 202 89
'C2ORF53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0173 (Fisher's exact test), Q value = 0.41

Table S1362.  Gene #141: 'C2ORF53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
C2ORF53 MUTATED 0 4 2 7
C2ORF53 WILD-TYPE 70 182 129 82

Figure S178.  Get High-res Image Gene #141: 'C2ORF53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C2ORF53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S1363.  Gene #141: 'C2ORF53 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
C2ORF53 MUTATED 3 4 3
C2ORF53 WILD-TYPE 138 178 86
'C2ORF53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.88

Table S1364.  Gene #141: 'C2ORF53 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
C2ORF53 MUTATED 0 8 2
C2ORF53 WILD-TYPE 94 225 83
'C1ORF177 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00138 (Fisher's exact test), Q value = 0.12

Table S1365.  Gene #142: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
C1ORF177 MUTATED 3 0 0 6
C1ORF177 WILD-TYPE 62 210 72 125

Figure S179.  Get High-res Image Gene #142: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C1ORF177 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0513 (Fisher's exact test), Q value = 0.62

Table S1366.  Gene #142: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
C1ORF177 MUTATED 0 5 2
C1ORF177 WILD-TYPE 131 133 159
'C1ORF177 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S1367.  Gene #142: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
C1ORF177 MUTATED 2 4 3
C1ORF177 WILD-TYPE 148 181 140
'C1ORF177 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0584 (Fisher's exact test), Q value = 0.62

Table S1368.  Gene #142: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
C1ORF177 MUTATED 1 0 5 0 2 0 1
C1ORF177 WILD-TYPE 71 109 85 44 47 46 67
'C1ORF177 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S1369.  Gene #142: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
C1ORF177 MUTATED 2 6 1
C1ORF177 WILD-TYPE 173 205 89
'C1ORF177 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.9

Table S1370.  Gene #142: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
C1ORF177 MUTATED 0 3 2 4
C1ORF177 WILD-TYPE 70 183 129 85
'C1ORF177 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.9

Table S1371.  Gene #142: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
C1ORF177 MUTATED 2 5 0
C1ORF177 WILD-TYPE 139 177 89
'C1ORF177 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0952 (Fisher's exact test), Q value = 0.72

Table S1372.  Gene #142: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
C1ORF177 MUTATED 0 7 0
C1ORF177 WILD-TYPE 94 226 85
'STK19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S1373.  Gene #143: 'STK19 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
STK19 MUTATED 1 2 0 2
STK19 WILD-TYPE 64 208 72 129
'STK19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1374.  Gene #143: 'STK19 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
STK19 MUTATED 1 2 2
STK19 WILD-TYPE 130 136 159
'STK19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S1375.  Gene #143: 'STK19 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
STK19 MUTATED 2 3 0
STK19 WILD-TYPE 148 182 143
'STK19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S1376.  Gene #143: 'STK19 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
STK19 MUTATED 1 1 1 0 0 1 1
STK19 WILD-TYPE 71 108 89 44 49 45 67
'STK19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S1377.  Gene #143: 'STK19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
STK19 MUTATED 1 3 1
STK19 WILD-TYPE 174 208 89
'STK19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S1378.  Gene #143: 'STK19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
STK19 MUTATED 0 3 2 0
STK19 WILD-TYPE 70 183 129 89
'STK19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0559 (Fisher's exact test), Q value = 0.62

Table S1379.  Gene #143: 'STK19 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
STK19 MUTATED 0 5 0
STK19 WILD-TYPE 141 177 89
'STK19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S1380.  Gene #143: 'STK19 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
STK19 MUTATED 1 4 0
STK19 WILD-TYPE 93 229 85
'PKD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S1381.  Gene #144: 'PKD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PKD2 MUTATED 2 5 3 5
PKD2 WILD-TYPE 63 205 69 126
'PKD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.73

Table S1382.  Gene #144: 'PKD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PKD2 MUTATED 1 6 8
PKD2 WILD-TYPE 130 132 153
'PKD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S1383.  Gene #144: 'PKD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
PKD2 MUTATED 0 3 2
PKD2 WILD-TYPE 42 68 61
'PKD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S1384.  Gene #144: 'PKD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
PKD2 MUTATED 1 2 1 1 0
PKD2 WILD-TYPE 38 30 42 29 32
'PKD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S1385.  Gene #144: 'PKD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PKD2 MUTATED 5 4 6
PKD2 WILD-TYPE 145 181 137
'PKD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.91

Table S1386.  Gene #144: 'PKD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PKD2 MUTATED 0 6 3 1 3 0 2
PKD2 WILD-TYPE 72 103 87 43 46 46 66
'PKD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S1387.  Gene #144: 'PKD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PKD2 MUTATED 4 7 4
PKD2 WILD-TYPE 171 204 86
'PKD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S1388.  Gene #144: 'PKD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PKD2 MUTATED 1 8 4 2
PKD2 WILD-TYPE 69 178 127 87
'PKD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S1389.  Gene #144: 'PKD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PKD2 MUTATED 4 6 4
PKD2 WILD-TYPE 137 176 85
'PKD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S1390.  Gene #144: 'PKD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PKD2 MUTATED 2 9 3
PKD2 WILD-TYPE 92 224 82
'NOTCH4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.79

Table S1391.  Gene #145: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
NOTCH4 MUTATED 0 3 0 0
NOTCH4 WILD-TYPE 5 4 5 3
'NOTCH4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1392.  Gene #145: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
NOTCH4 MUTATED 1 2 0
NOTCH4 WILD-TYPE 6 7 4
'NOTCH4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0729 (Fisher's exact test), Q value = 0.65

Table S1393.  Gene #145: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
NOTCH4 MUTATED 5 12 8 18
NOTCH4 WILD-TYPE 60 198 64 113
'NOTCH4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0563 (Fisher's exact test), Q value = 0.62

Table S1394.  Gene #145: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
NOTCH4 MUTATED 5 15 16
NOTCH4 WILD-TYPE 126 123 145
'NOTCH4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0928 (Fisher's exact test), Q value = 0.72

Table S1395.  Gene #145: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
NOTCH4 MUTATED 1 9 9
NOTCH4 WILD-TYPE 41 62 54
'NOTCH4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S1396.  Gene #145: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
NOTCH4 MUTATED 3 3 6 5 2
NOTCH4 WILD-TYPE 36 29 37 25 30
'NOTCH4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.73

Table S1397.  Gene #145: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
NOTCH4 MUTATED 9 23 11
NOTCH4 WILD-TYPE 141 162 132
'NOTCH4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S1398.  Gene #145: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
NOTCH4 MUTATED 5 13 8 1 6 6 4
NOTCH4 WILD-TYPE 67 96 82 43 43 40 64
'NOTCH4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0324 (Fisher's exact test), Q value = 0.54

Table S1399.  Gene #145: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
NOTCH4 MUTATED 8 25 9
NOTCH4 WILD-TYPE 167 186 81

Figure S180.  Get High-res Image Gene #145: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NOTCH4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00621 (Fisher's exact test), Q value = 0.28

Table S1400.  Gene #145: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
NOTCH4 MUTATED 6 22 3 11
NOTCH4 WILD-TYPE 64 164 128 78

Figure S181.  Get High-res Image Gene #145: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NOTCH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.84

Table S1401.  Gene #145: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
NOTCH4 MUTATED 11 11 11
NOTCH4 WILD-TYPE 130 171 78
'NOTCH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.73

Table S1402.  Gene #145: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
NOTCH4 MUTATED 3 23 7
NOTCH4 WILD-TYPE 91 210 78
'COL15A1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S1403.  Gene #146: 'COL15A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
COL15A1 MUTATED 2 2 0 1
COL15A1 WILD-TYPE 3 5 5 2
'COL15A1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S1404.  Gene #146: 'COL15A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
COL15A1 MUTATED 1 2 2
COL15A1 WILD-TYPE 6 7 2
'COL15A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.93

Table S1405.  Gene #146: 'COL15A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
COL15A1 MUTATED 5 10 8 8
COL15A1 WILD-TYPE 60 200 64 123
'COL15A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S1406.  Gene #146: 'COL15A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
COL15A1 MUTATED 6 7 13
COL15A1 WILD-TYPE 125 131 148
'COL15A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S1407.  Gene #146: 'COL15A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
COL15A1 MUTATED 3 6 3
COL15A1 WILD-TYPE 39 65 60
'COL15A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S1408.  Gene #146: 'COL15A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
COL15A1 MUTATED 4 1 2 1 4
COL15A1 WILD-TYPE 35 31 41 29 28
'COL15A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.82

Table S1409.  Gene #146: 'COL15A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
COL15A1 MUTATED 8 17 6
COL15A1 WILD-TYPE 142 168 137
'COL15A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.83

Table S1410.  Gene #146: 'COL15A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
COL15A1 MUTATED 5 12 7 0 2 3 2
COL15A1 WILD-TYPE 67 97 83 44 47 43 66
'COL15A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00184 (Fisher's exact test), Q value = 0.15

Table S1411.  Gene #146: 'COL15A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
COL15A1 MUTATED 3 21 7
COL15A1 WILD-TYPE 172 190 83

Figure S182.  Get High-res Image Gene #146: 'COL15A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'COL15A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0484 (Fisher's exact test), Q value = 0.62

Table S1412.  Gene #146: 'COL15A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
COL15A1 MUTATED 3 17 3 8
COL15A1 WILD-TYPE 67 169 128 81

Figure S183.  Get High-res Image Gene #146: 'COL15A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'COL15A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.95

Table S1413.  Gene #146: 'COL15A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
COL15A1 MUTATED 6 9 8
COL15A1 WILD-TYPE 135 173 81
'COL15A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.83

Table S1414.  Gene #146: 'COL15A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
COL15A1 MUTATED 2 17 4
COL15A1 WILD-TYPE 92 216 81
'SOS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S1415.  Gene #147: 'SOS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SOS2 MUTATED 1 6 4 2
SOS2 WILD-TYPE 64 204 68 129
'SOS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S1416.  Gene #147: 'SOS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SOS2 MUTATED 2 3 6
SOS2 WILD-TYPE 129 135 155
'SOS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S1417.  Gene #147: 'SOS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SOS2 MUTATED 0 2 3
SOS2 WILD-TYPE 42 69 60
'SOS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S1418.  Gene #147: 'SOS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SOS2 MUTATED 2 0 1 2 0
SOS2 WILD-TYPE 37 32 42 28 32
'SOS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0678 (Fisher's exact test), Q value = 0.65

Table S1419.  Gene #147: 'SOS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SOS2 MUTATED 3 9 1
SOS2 WILD-TYPE 147 176 142
'SOS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S1420.  Gene #147: 'SOS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SOS2 MUTATED 1 4 3 0 0 3 2
SOS2 WILD-TYPE 71 105 87 44 49 43 66
'SOS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.78

Table S1421.  Gene #147: 'SOS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SOS2 MUTATED 5 8 0
SOS2 WILD-TYPE 170 203 90
'SOS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.85

Table S1422.  Gene #147: 'SOS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SOS2 MUTATED 0 7 2 4
SOS2 WILD-TYPE 70 179 129 85
'SOS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1423.  Gene #147: 'SOS2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SOS2 MUTATED 4 5 2
SOS2 WILD-TYPE 137 177 87
'SOS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.97

Table S1424.  Gene #147: 'SOS2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SOS2 MUTATED 1 9 1
SOS2 WILD-TYPE 93 224 84
'SETDB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0908 (Fisher's exact test), Q value = 0.72

Table S1425.  Gene #148: 'SETDB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SETDB1 MUTATED 2 2 4 2
SETDB1 WILD-TYPE 63 208 68 129
'SETDB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.97

Table S1426.  Gene #148: 'SETDB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SETDB1 MUTATED 2 1 5
SETDB1 WILD-TYPE 129 137 156
'SETDB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0908 (Fisher's exact test), Q value = 0.72

Table S1427.  Gene #148: 'SETDB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SETDB1 MUTATED 1 7 1
SETDB1 WILD-TYPE 149 178 142
'SETDB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S1428.  Gene #148: 'SETDB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SETDB1 MUTATED 1 5 2 0 0 1 0
SETDB1 WILD-TYPE 71 104 88 44 49 45 68
'SETDB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S1429.  Gene #148: 'SETDB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SETDB1 MUTATED 4 3 2
SETDB1 WILD-TYPE 171 208 88
'SETDB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S1430.  Gene #148: 'SETDB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SETDB1 MUTATED 0 3 3 3
SETDB1 WILD-TYPE 70 183 128 86
'SETDB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S1431.  Gene #148: 'SETDB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SETDB1 MUTATED 2 3 3
SETDB1 WILD-TYPE 139 179 86
'SETDB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S1432.  Gene #148: 'SETDB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SETDB1 MUTATED 1 5 2
SETDB1 WILD-TYPE 93 228 83
'ANTXR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S1433.  Gene #149: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ANTXR1 MUTATED 4 8 2 5
ANTXR1 WILD-TYPE 61 202 70 126
'ANTXR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S1434.  Gene #149: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ANTXR1 MUTATED 5 4 8
ANTXR1 WILD-TYPE 126 134 153
'ANTXR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S1435.  Gene #149: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ANTXR1 MUTATED 2 1 2
ANTXR1 WILD-TYPE 40 70 61
'ANTXR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.83

Table S1436.  Gene #149: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ANTXR1 MUTATED 1 0 1 0 3
ANTXR1 WILD-TYPE 38 32 42 30 29
'ANTXR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S1437.  Gene #149: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ANTXR1 MUTATED 7 8 4
ANTXR1 WILD-TYPE 143 177 139
'ANTXR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1438.  Gene #149: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ANTXR1 MUTATED 5 5 2 1 1 1 4
ANTXR1 WILD-TYPE 67 104 88 43 48 45 64
'ANTXR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S1439.  Gene #149: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ANTXR1 MUTATED 9 7 2
ANTXR1 WILD-TYPE 166 204 88
'ANTXR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S1440.  Gene #149: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ANTXR1 MUTATED 4 7 5 2
ANTXR1 WILD-TYPE 66 179 126 87
'ANTXR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1441.  Gene #149: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ANTXR1 MUTATED 6 8 2
ANTXR1 WILD-TYPE 135 174 87
'ANTXR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S1442.  Gene #149: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ANTXR1 MUTATED 4 7 5
ANTXR1 WILD-TYPE 90 226 80
'SLC38A8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S1443.  Gene #150: 'SLC38A8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SLC38A8 MUTATED 2 2 1 4
SLC38A8 WILD-TYPE 63 208 71 127
'SLC38A8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0812 (Fisher's exact test), Q value = 0.68

Table S1444.  Gene #150: 'SLC38A8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SLC38A8 MUTATED 0 5 3
SLC38A8 WILD-TYPE 131 133 158
'SLC38A8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0548 (Fisher's exact test), Q value = 0.62

Table S1445.  Gene #150: 'SLC38A8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SLC38A8 MUTATED 0 1 5
SLC38A8 WILD-TYPE 42 70 58
'SLC38A8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S1446.  Gene #150: 'SLC38A8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SLC38A8 MUTATED 1 2 1 2 0
SLC38A8 WILD-TYPE 38 30 42 28 32
'SLC38A8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0739 (Fisher's exact test), Q value = 0.66

Table S1447.  Gene #150: 'SLC38A8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SLC38A8 MUTATED 1 2 6
SLC38A8 WILD-TYPE 149 183 137
'SLC38A8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.73

Table S1448.  Gene #150: 'SLC38A8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SLC38A8 MUTATED 0 0 4 1 2 1 1
SLC38A8 WILD-TYPE 72 109 86 43 47 45 67
'SLC38A8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S1449.  Gene #150: 'SLC38A8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SLC38A8 MUTATED 2 5 2
SLC38A8 WILD-TYPE 173 206 88
'SLC38A8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S1450.  Gene #150: 'SLC38A8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SLC38A8 MUTATED 1 4 1 3
SLC38A8 WILD-TYPE 69 182 130 86
'SLC38A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S1451.  Gene #150: 'SLC38A8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SLC38A8 MUTATED 4 2 2
SLC38A8 WILD-TYPE 137 180 87
'SLC38A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.97

Table S1452.  Gene #150: 'SLC38A8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SLC38A8 MUTATED 0 6 2
SLC38A8 WILD-TYPE 94 227 83
'COL3A1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S1453.  Gene #151: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
COL3A1 MUTATED 0 2 1 1
COL3A1 WILD-TYPE 5 5 4 2
'COL3A1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S1454.  Gene #151: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
COL3A1 MUTATED 2 1 1
COL3A1 WILD-TYPE 5 8 3
'COL3A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.95

Table S1455.  Gene #151: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
COL3A1 MUTATED 7 18 8 20
COL3A1 WILD-TYPE 58 192 64 111
'COL3A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S1456.  Gene #151: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
COL3A1 MUTATED 12 18 17
COL3A1 WILD-TYPE 119 120 144
'COL3A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S1457.  Gene #151: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
COL3A1 MUTATED 2 7 8
COL3A1 WILD-TYPE 40 64 55
'COL3A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0964 (Fisher's exact test), Q value = 0.73

Table S1458.  Gene #151: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
COL3A1 MUTATED 1 3 7 5 1
COL3A1 WILD-TYPE 38 29 36 25 31
'COL3A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00919 (Fisher's exact test), Q value = 0.33

Table S1459.  Gene #151: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
COL3A1 MUTATED 8 29 16
COL3A1 WILD-TYPE 142 156 127

Figure S184.  Get High-res Image Gene #151: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'COL3A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.93

Table S1460.  Gene #151: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
COL3A1 MUTATED 4 13 13 3 7 8 5
COL3A1 WILD-TYPE 68 96 77 41 42 38 63
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00114 (Fisher's exact test), Q value = 0.11

Table S1461.  Gene #151: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
COL3A1 MUTATED 8 33 12
COL3A1 WILD-TYPE 167 178 78

Figure S185.  Get High-res Image Gene #151: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'COL3A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00988 (Fisher's exact test), Q value = 0.34

Table S1462.  Gene #151: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
COL3A1 MUTATED 4 24 8 17
COL3A1 WILD-TYPE 66 162 123 72

Figure S186.  Get High-res Image Gene #151: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'COL3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S1463.  Gene #151: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
COL3A1 MUTATED 12 20 13
COL3A1 WILD-TYPE 129 162 76
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00291 (Fisher's exact test), Q value = 0.19

Table S1464.  Gene #151: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
COL3A1 MUTATED 4 36 5
COL3A1 WILD-TYPE 90 197 80

Figure S187.  Get High-res Image Gene #151: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RBBP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S1465.  Gene #152: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
RBBP6 MUTATED 1 6 5 5
RBBP6 WILD-TYPE 64 204 67 126
'RBBP6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S1466.  Gene #152: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
RBBP6 MUTATED 3 7 4
RBBP6 WILD-TYPE 128 131 157
'RBBP6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.8

Table S1467.  Gene #152: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
RBBP6 MUTATED 2 4 0
RBBP6 WILD-TYPE 40 67 63
'RBBP6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S1468.  Gene #152: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
RBBP6 MUTATED 3 1 1 0 1
RBBP6 WILD-TYPE 36 31 42 30 31
'RBBP6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.77

Table S1469.  Gene #152: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
RBBP6 MUTATED 2 10 5
RBBP6 WILD-TYPE 148 175 138
'RBBP6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.87

Table S1470.  Gene #152: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
RBBP6 MUTATED 0 7 3 1 2 3 1
RBBP6 WILD-TYPE 72 102 87 43 47 43 67
'RBBP6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.94

Table S1471.  Gene #152: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
RBBP6 MUTATED 4 11 2
RBBP6 WILD-TYPE 171 200 88
'RBBP6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.73

Table S1472.  Gene #152: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
RBBP6 MUTATED 2 6 2 7
RBBP6 WILD-TYPE 68 180 129 82
'RBBP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S1473.  Gene #152: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
RBBP6 MUTATED 4 7 1
RBBP6 WILD-TYPE 137 175 88
'RBBP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.92

Table S1474.  Gene #152: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
RBBP6 MUTATED 1 10 1
RBBP6 WILD-TYPE 93 223 84
'RFX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S1475.  Gene #153: 'RFX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
RFX1 MUTATED 2 5 1 1
RFX1 WILD-TYPE 63 205 71 130
'RFX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.99

Table S1476.  Gene #153: 'RFX1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
RFX1 MUTATED 1 2 5
RFX1 WILD-TYPE 130 136 156
'RFX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S1477.  Gene #153: 'RFX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
RFX1 MUTATED 3 2 3
RFX1 WILD-TYPE 147 183 140
'RFX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S1478.  Gene #153: 'RFX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
RFX1 MUTATED 1 2 1 0 2 1 1
RFX1 WILD-TYPE 71 107 89 44 47 45 67
'RFX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 0.5

Table S1479.  Gene #153: 'RFX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
RFX1 MUTATED 0 7 2
RFX1 WILD-TYPE 175 204 88

Figure S188.  Get High-res Image Gene #153: 'RFX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RFX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0441 (Fisher's exact test), Q value = 0.6

Table S1480.  Gene #153: 'RFX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
RFX1 MUTATED 0 7 0 2
RFX1 WILD-TYPE 70 179 131 87

Figure S189.  Get High-res Image Gene #153: 'RFX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RFX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S1481.  Gene #153: 'RFX1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
RFX1 MUTATED 1 3 2
RFX1 WILD-TYPE 140 179 87
'RFX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S1482.  Gene #153: 'RFX1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
RFX1 MUTATED 0 5 1
RFX1 WILD-TYPE 94 228 84
'PRB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S1483.  Gene #154: 'PRB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PRB2 MUTATED 1 5 4 3
PRB2 WILD-TYPE 64 205 68 128
'PRB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1484.  Gene #154: 'PRB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PRB2 MUTATED 4 4 5
PRB2 WILD-TYPE 127 134 156
'PRB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S1485.  Gene #154: 'PRB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PRB2 MUTATED 3 6 3
PRB2 WILD-TYPE 147 179 140
'PRB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.76

Table S1486.  Gene #154: 'PRB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PRB2 MUTATED 0 2 1 1 1 2 5
PRB2 WILD-TYPE 72 107 89 43 48 44 63
'PRB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S1487.  Gene #154: 'PRB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PRB2 MUTATED 5 7 1
PRB2 WILD-TYPE 170 204 89
'PRB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S1488.  Gene #154: 'PRB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PRB2 MUTATED 2 3 5 3
PRB2 WILD-TYPE 68 183 126 86
'PRB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S1489.  Gene #154: 'PRB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PRB2 MUTATED 5 7 1
PRB2 WILD-TYPE 136 175 88
'PRB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.95

Table S1490.  Gene #154: 'PRB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PRB2 MUTATED 5 7 1
PRB2 WILD-TYPE 89 226 84
'COL25A1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S1491.  Gene #155: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
COL25A1 MUTATED 2 2 0 0
COL25A1 WILD-TYPE 3 5 5 3
'COL25A1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1492.  Gene #155: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
COL25A1 MUTATED 1 2 1
COL25A1 WILD-TYPE 6 7 3
'COL25A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0528 (Fisher's exact test), Q value = 0.62

Table S1493.  Gene #155: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
COL25A1 MUTATED 2 9 8 13
COL25A1 WILD-TYPE 63 201 64 118
'COL25A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S1494.  Gene #155: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
COL25A1 MUTATED 9 10 10
COL25A1 WILD-TYPE 122 128 151
'COL25A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S1495.  Gene #155: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
COL25A1 MUTATED 1 5 3
COL25A1 WILD-TYPE 41 66 60
'COL25A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S1496.  Gene #155: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
COL25A1 MUTATED 2 0 4 1 2
COL25A1 WILD-TYPE 37 32 39 29 30
'COL25A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.99

Table S1497.  Gene #155: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
COL25A1 MUTATED 7 16 9
COL25A1 WILD-TYPE 143 169 134
'COL25A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0903 (Fisher's exact test), Q value = 0.72

Table S1498.  Gene #155: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
COL25A1 MUTATED 1 11 7 0 3 4 6
COL25A1 WILD-TYPE 71 98 83 44 46 42 62
'COL25A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S1499.  Gene #155: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
COL25A1 MUTATED 10 18 4
COL25A1 WILD-TYPE 165 193 86
'COL25A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.73

Table S1500.  Gene #155: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
COL25A1 MUTATED 7 12 4 9
COL25A1 WILD-TYPE 63 174 127 80
'COL25A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S1501.  Gene #155: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
COL25A1 MUTATED 9 11 7
COL25A1 WILD-TYPE 132 171 82
'COL25A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0993 (Fisher's exact test), Q value = 0.73

Table S1502.  Gene #155: 'COL25A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
COL25A1 MUTATED 2 20 5
COL25A1 WILD-TYPE 92 213 80
'PPP2R5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S1503.  Gene #156: 'PPP2R5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PPP2R5B MUTATED 0 4 1 2
PPP2R5B WILD-TYPE 65 206 71 129
'PPP2R5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S1504.  Gene #156: 'PPP2R5B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PPP2R5B MUTATED 2 3 1
PPP2R5B WILD-TYPE 129 135 160
'PPP2R5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S1505.  Gene #156: 'PPP2R5B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
PPP2R5B MUTATED 1 1 2
PPP2R5B WILD-TYPE 41 70 61
'PPP2R5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S1506.  Gene #156: 'PPP2R5B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
PPP2R5B MUTATED 0 1 2 1 0
PPP2R5B WILD-TYPE 39 31 41 29 32
'PPP2R5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1507.  Gene #156: 'PPP2R5B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PPP2R5B MUTATED 2 3 2
PPP2R5B WILD-TYPE 148 182 141
'PPP2R5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.95

Table S1508.  Gene #156: 'PPP2R5B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PPP2R5B MUTATED 2 0 3 1 0 0 1
PPP2R5B WILD-TYPE 70 109 87 43 49 46 67
'PPP2R5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1509.  Gene #156: 'PPP2R5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PPP2R5B MUTATED 3 3 1
PPP2R5B WILD-TYPE 172 208 89
'PPP2R5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.97

Table S1510.  Gene #156: 'PPP2R5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PPP2R5B MUTATED 2 1 2 2
PPP2R5B WILD-TYPE 68 185 129 87
'PPP2R5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.93

Table S1511.  Gene #156: 'PPP2R5B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PPP2R5B MUTATED 4 2 0
PPP2R5B WILD-TYPE 137 180 89
'PPP2R5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.83

Table S1512.  Gene #156: 'PPP2R5B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PPP2R5B MUTATED 1 2 3
PPP2R5B WILD-TYPE 93 231 82
'DZIP1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.99

Table S1513.  Gene #157: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
DZIP1L MUTATED 3 3 1 4
DZIP1L WILD-TYPE 62 207 71 127
'DZIP1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S1514.  Gene #157: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
DZIP1L MUTATED 2 4 5
DZIP1L WILD-TYPE 129 134 156
'DZIP1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S1515.  Gene #157: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
DZIP1L MUTATED 0 2 1
DZIP1L WILD-TYPE 42 69 62
'DZIP1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S1516.  Gene #157: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
DZIP1L MUTATED 0 0 2 1 0
DZIP1L WILD-TYPE 39 32 41 29 32
'DZIP1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.87

Table S1517.  Gene #157: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
DZIP1L MUTATED 1 5 5
DZIP1L WILD-TYPE 149 180 138
'DZIP1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S1518.  Gene #157: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
DZIP1L MUTATED 1 2 2 0 3 2 1
DZIP1L WILD-TYPE 71 107 88 44 46 44 67
'DZIP1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0475 (Fisher's exact test), Q value = 0.62

Table S1519.  Gene #157: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
DZIP1L MUTATED 1 9 1
DZIP1L WILD-TYPE 174 202 89

Figure S190.  Get High-res Image Gene #157: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DZIP1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0626 (Fisher's exact test), Q value = 0.63

Table S1520.  Gene #157: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
DZIP1L MUTATED 1 6 0 4
DZIP1L WILD-TYPE 69 180 131 85
'DZIP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.93

Table S1521.  Gene #157: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
DZIP1L MUTATED 1 6 3
DZIP1L WILD-TYPE 140 176 86
'DZIP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.73

Table S1522.  Gene #157: 'DZIP1L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
DZIP1L MUTATED 1 9 0
DZIP1L WILD-TYPE 93 224 85
'RLTPR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S1523.  Gene #158: 'RLTPR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
RLTPR MUTATED 0 8 2 5
RLTPR WILD-TYPE 65 202 70 126
'RLTPR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S1524.  Gene #158: 'RLTPR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
RLTPR MUTATED 4 4 6
RLTPR WILD-TYPE 127 134 155
'RLTPR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.94

Table S1525.  Gene #158: 'RLTPR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
RLTPR MUTATED 1 3 0
RLTPR WILD-TYPE 41 68 63
'RLTPR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0996 (Fisher's exact test), Q value = 0.73

Table S1526.  Gene #158: 'RLTPR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
RLTPR MUTATED 3 0 0 0 1
RLTPR WILD-TYPE 36 32 43 30 31
'RLTPR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.97

Table S1527.  Gene #158: 'RLTPR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
RLTPR MUTATED 5 8 2
RLTPR WILD-TYPE 145 177 141
'RLTPR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00616 (Fisher's exact test), Q value = 0.28

Table S1528.  Gene #158: 'RLTPR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
RLTPR MUTATED 2 8 0 0 0 4 1
RLTPR WILD-TYPE 70 101 90 44 49 42 67

Figure S191.  Get High-res Image Gene #158: 'RLTPR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RLTPR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.88

Table S1529.  Gene #158: 'RLTPR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
RLTPR MUTATED 4 10 1
RLTPR WILD-TYPE 171 201 89
'RLTPR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.78

Table S1530.  Gene #158: 'RLTPR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
RLTPR MUTATED 4 8 1 2
RLTPR WILD-TYPE 66 178 130 87
'RLTPR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1531.  Gene #158: 'RLTPR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
RLTPR MUTATED 4 6 2
RLTPR WILD-TYPE 137 176 87
'RLTPR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S1532.  Gene #158: 'RLTPR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
RLTPR MUTATED 1 9 2
RLTPR WILD-TYPE 93 224 83
'CD40LG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S1533.  Gene #159: 'CD40LG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CD40LG MUTATED 0 2 1 3
CD40LG WILD-TYPE 65 208 71 128
'CD40LG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S1534.  Gene #159: 'CD40LG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CD40LG MUTATED 2 2 1
CD40LG WILD-TYPE 129 136 160
'CD40LG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1535.  Gene #159: 'CD40LG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
CD40LG MUTATED 1 1 1
CD40LG WILD-TYPE 41 70 62
'CD40LG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1536.  Gene #159: 'CD40LG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
CD40LG MUTATED 1 0 1 0 1
CD40LG WILD-TYPE 38 32 42 30 31
'CD40LG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.95

Table S1537.  Gene #159: 'CD40LG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CD40LG MUTATED 4 1 1
CD40LG WILD-TYPE 146 184 142
'CD40LG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S1538.  Gene #159: 'CD40LG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CD40LG MUTATED 2 2 1 0 0 0 1
CD40LG WILD-TYPE 70 107 89 44 49 46 67
'CD40LG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S1539.  Gene #159: 'CD40LG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CD40LG MUTATED 2 2 2
CD40LG WILD-TYPE 173 209 88
'CD40LG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S1540.  Gene #159: 'CD40LG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CD40LG MUTATED 1 3 2 0
CD40LG WILD-TYPE 69 183 129 89
'CD40LG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S1541.  Gene #159: 'CD40LG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CD40LG MUTATED 2 1 1
CD40LG WILD-TYPE 139 181 88
'CD40LG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 0.95

Table S1542.  Gene #159: 'CD40LG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CD40LG MUTATED 0 2 2
CD40LG WILD-TYPE 94 231 83
'LGALS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S1543.  Gene #160: 'LGALS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
LGALS2 MUTATED 1 2 1 1
LGALS2 WILD-TYPE 64 208 71 130
'LGALS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1544.  Gene #160: 'LGALS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
LGALS2 MUTATED 1 1 2
LGALS2 WILD-TYPE 130 137 159
'LGALS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S1545.  Gene #160: 'LGALS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
LGALS2 MUTATED 1 2 2
LGALS2 WILD-TYPE 149 183 141
'LGALS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S1546.  Gene #160: 'LGALS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
LGALS2 MUTATED 1 1 2 0 1 0 0
LGALS2 WILD-TYPE 71 108 88 44 48 46 68
'LGALS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S1547.  Gene #160: 'LGALS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
LGALS2 MUTATED 1 3 1
LGALS2 WILD-TYPE 174 208 89
'LGALS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S1548.  Gene #160: 'LGALS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
LGALS2 MUTATED 0 1 2 2
LGALS2 WILD-TYPE 70 185 129 87
'LGALS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S1549.  Gene #160: 'LGALS2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
LGALS2 MUTATED 1 1 1
LGALS2 WILD-TYPE 140 181 88
'LGALS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1550.  Gene #160: 'LGALS2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
LGALS2 MUTATED 0 2 1
LGALS2 WILD-TYPE 94 231 84
'PADI2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0892 (Fisher's exact test), Q value = 0.71

Table S1551.  Gene #161: 'PADI2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PADI2 MUTATED 4 2 1 3
PADI2 WILD-TYPE 61 208 71 128
'PADI2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.85

Table S1552.  Gene #161: 'PADI2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PADI2 MUTATED 1 2 6
PADI2 WILD-TYPE 130 136 155
'PADI2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.99

Table S1553.  Gene #161: 'PADI2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
PADI2 MUTATED 0 1 3
PADI2 WILD-TYPE 42 70 60
'PADI2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S1554.  Gene #161: 'PADI2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
PADI2 MUTATED 1 2 1 0 0
PADI2 WILD-TYPE 38 30 42 30 32
'PADI2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.97

Table S1555.  Gene #161: 'PADI2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PADI2 MUTATED 3 2 5
PADI2 WILD-TYPE 147 183 138
'PADI2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S1556.  Gene #161: 'PADI2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PADI2 MUTATED 2 2 1 0 3 1 1
PADI2 WILD-TYPE 70 107 89 44 46 45 67
'PADI2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S1557.  Gene #161: 'PADI2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PADI2 MUTATED 4 5 1
PADI2 WILD-TYPE 171 206 89
'PADI2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.97

Table S1558.  Gene #161: 'PADI2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PADI2 MUTATED 0 3 5 2
PADI2 WILD-TYPE 70 183 126 87
'PADI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1559.  Gene #161: 'PADI2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PADI2 MUTATED 3 4 1
PADI2 WILD-TYPE 138 178 88
'PADI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S1560.  Gene #161: 'PADI2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PADI2 MUTATED 1 6 1
PADI2 WILD-TYPE 93 227 84
'C1ORF116 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S1561.  Gene #162: 'C1ORF116 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
C1ORF116 MUTATED 2 4 1 4
C1ORF116 WILD-TYPE 63 206 71 127
'C1ORF116 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.92

Table S1562.  Gene #162: 'C1ORF116 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
C1ORF116 MUTATED 1 3 6
C1ORF116 WILD-TYPE 130 135 155
'C1ORF116 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S1563.  Gene #162: 'C1ORF116 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
C1ORF116 MUTATED 1 1 3
C1ORF116 WILD-TYPE 41 70 60
'C1ORF116 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.73

Table S1564.  Gene #162: 'C1ORF116 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
C1ORF116 MUTATED 1 0 0 1 3
C1ORF116 WILD-TYPE 38 32 43 29 29
'C1ORF116 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S1565.  Gene #162: 'C1ORF116 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
C1ORF116 MUTATED 2 6 3
C1ORF116 WILD-TYPE 148 179 140
'C1ORF116 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S1566.  Gene #162: 'C1ORF116 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
C1ORF116 MUTATED 2 3 2 0 1 2 1
C1ORF116 WILD-TYPE 70 106 88 44 48 44 67
'C1ORF116 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.83

Table S1567.  Gene #162: 'C1ORF116 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
C1ORF116 MUTATED 2 8 1
C1ORF116 WILD-TYPE 173 203 89
'C1ORF116 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S1568.  Gene #162: 'C1ORF116 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
C1ORF116 MUTATED 2 4 2 3
C1ORF116 WILD-TYPE 68 182 129 86
'C1ORF116 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S1569.  Gene #162: 'C1ORF116 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
C1ORF116 MUTATED 3 3 2
C1ORF116 WILD-TYPE 138 179 87
'C1ORF116 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1570.  Gene #162: 'C1ORF116 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
C1ORF116 MUTATED 2 5 1
C1ORF116 WILD-TYPE 92 228 84
'NBPF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S1571.  Gene #163: 'NBPF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
NBPF3 MUTATED 2 2 0 2
NBPF3 WILD-TYPE 63 208 72 129
'NBPF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1572.  Gene #163: 'NBPF3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
NBPF3 MUTATED 2 2 2
NBPF3 WILD-TYPE 129 136 159
'NBPF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0991 (Fisher's exact test), Q value = 0.73

Table S1573.  Gene #163: 'NBPF3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
NBPF3 MUTATED 3 0 3
NBPF3 WILD-TYPE 147 185 140
'NBPF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0218 (Fisher's exact test), Q value = 0.47

Table S1574.  Gene #163: 'NBPF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
NBPF3 MUTATED 0 0 0 2 2 1 1
NBPF3 WILD-TYPE 72 109 90 42 47 45 67

Figure S192.  Get High-res Image Gene #163: 'NBPF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NBPF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S1575.  Gene #163: 'NBPF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
NBPF3 MUTATED 2 4 0
NBPF3 WILD-TYPE 173 207 90
'NBPF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S1576.  Gene #163: 'NBPF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
NBPF3 MUTATED 0 3 2 1
NBPF3 WILD-TYPE 70 183 129 88
'NBPF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0548 (Fisher's exact test), Q value = 0.62

Table S1577.  Gene #163: 'NBPF3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
NBPF3 MUTATED 0 5 0
NBPF3 WILD-TYPE 141 177 89
'NBPF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S1578.  Gene #163: 'NBPF3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
NBPF3 MUTATED 1 4 0
NBPF3 WILD-TYPE 93 229 85
'RNMT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0493 (Fisher's exact test), Q value = 0.62

Table S1579.  Gene #164: 'RNMT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
RNMT MUTATED 0 1 3 4
RNMT WILD-TYPE 65 209 69 127

Figure S193.  Get High-res Image Gene #164: 'RNMT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RNMT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.88

Table S1580.  Gene #164: 'RNMT MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
RNMT MUTATED 1 5 2
RNMT WILD-TYPE 130 133 159
'RNMT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1581.  Gene #164: 'RNMT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
RNMT MUTATED 1 2 2
RNMT WILD-TYPE 41 69 61
'RNMT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 0.97

Table S1582.  Gene #164: 'RNMT MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
RNMT MUTATED 0 0 3 1 1
RNMT WILD-TYPE 39 32 40 29 31
'RNMT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S1583.  Gene #164: 'RNMT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
RNMT MUTATED 1 4 3
RNMT WILD-TYPE 149 181 140
'RNMT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S1584.  Gene #164: 'RNMT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
RNMT MUTATED 1 2 3 0 1 1 0
RNMT WILD-TYPE 71 107 87 44 48 45 68
'RNMT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S1585.  Gene #164: 'RNMT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
RNMT MUTATED 2 3 3
RNMT WILD-TYPE 173 208 87
'RNMT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.82

Table S1586.  Gene #164: 'RNMT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
RNMT MUTATED 2 5 0 1
RNMT WILD-TYPE 68 181 131 88
'RNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1587.  Gene #164: 'RNMT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
RNMT MUTATED 3 3 1
RNMT WILD-TYPE 138 179 88
'RNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.83

Table S1588.  Gene #164: 'RNMT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
RNMT MUTATED 0 4 3
RNMT WILD-TYPE 94 229 82
'PXK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.97

Table S1589.  Gene #165: 'PXK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PXK MUTATED 2 2 0 3
PXK WILD-TYPE 63 208 72 128
'PXK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S1590.  Gene #165: 'PXK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PXK MUTATED 0 2 3
PXK WILD-TYPE 131 136 158
'PXK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.93

Table S1591.  Gene #165: 'PXK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PXK MUTATED 1 5 1
PXK WILD-TYPE 149 180 142
'PXK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S1592.  Gene #165: 'PXK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PXK MUTATED 1 3 1 0 1 0 1
PXK WILD-TYPE 71 106 89 44 48 46 67
'PXK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.84

Table S1593.  Gene #165: 'PXK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PXK MUTATED 1 3 3
PXK WILD-TYPE 174 208 87
'PXK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.75

Table S1594.  Gene #165: 'PXK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PXK MUTATED 0 2 1 4
PXK WILD-TYPE 70 184 130 85
'PXK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0786 (Fisher's exact test), Q value = 0.67

Table S1595.  Gene #165: 'PXK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PXK MUTATED 2 0 2
PXK WILD-TYPE 139 182 87
'PXK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.95

Table S1596.  Gene #165: 'PXK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PXK MUTATED 0 2 2
PXK WILD-TYPE 94 231 83
'ZNF223 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.79

Table S1597.  Gene #166: 'ZNF223 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ZNF223 MUTATED 1 2 1 6
ZNF223 WILD-TYPE 64 208 71 125
'ZNF223 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 0.41

Table S1598.  Gene #166: 'ZNF223 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ZNF223 MUTATED 0 7 3
ZNF223 WILD-TYPE 131 131 158

Figure S194.  Get High-res Image Gene #166: 'ZNF223 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZNF223 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.94

Table S1599.  Gene #166: 'ZNF223 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ZNF223 MUTATED 1 3 0
ZNF223 WILD-TYPE 41 68 63
'ZNF223 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.85

Table S1600.  Gene #166: 'ZNF223 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ZNF223 MUTATED 0 0 2 0 2
ZNF223 WILD-TYPE 39 32 41 30 30
'ZNF223 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.96

Table S1601.  Gene #166: 'ZNF223 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ZNF223 MUTATED 1 5 4
ZNF223 WILD-TYPE 149 180 139
'ZNF223 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.94

Table S1602.  Gene #166: 'ZNF223 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ZNF223 MUTATED 1 1 5 1 1 1 0
ZNF223 WILD-TYPE 71 108 85 43 48 45 68
'ZNF223 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0761 (Fisher's exact test), Q value = 0.67

Table S1603.  Gene #166: 'ZNF223 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ZNF223 MUTATED 1 8 1
ZNF223 WILD-TYPE 174 203 89
'ZNF223 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0314 (Fisher's exact test), Q value = 0.54

Table S1604.  Gene #166: 'ZNF223 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ZNF223 MUTATED 1 4 0 5
ZNF223 WILD-TYPE 69 182 131 84

Figure S195.  Get High-res Image Gene #166: 'ZNF223 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF223 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.88

Table S1605.  Gene #166: 'ZNF223 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ZNF223 MUTATED 5 5 0
ZNF223 WILD-TYPE 136 177 89
'ZNF223 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.9

Table S1606.  Gene #166: 'ZNF223 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ZNF223 MUTATED 2 8 0
ZNF223 WILD-TYPE 92 225 85
'ASXL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S1607.  Gene #167: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ASXL2 MUTATED 4 8 2 3
ASXL2 WILD-TYPE 61 202 70 128
'ASXL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S1608.  Gene #167: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ASXL2 MUTATED 3 7 6
ASXL2 WILD-TYPE 128 131 155
'ASXL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S1609.  Gene #167: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ASXL2 MUTATED 1 3 1
ASXL2 WILD-TYPE 41 68 62
'ASXL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S1610.  Gene #167: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ASXL2 MUTATED 1 1 0 2 1
ASXL2 WILD-TYPE 38 31 43 28 31
'ASXL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S1611.  Gene #167: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ASXL2 MUTATED 5 5 8
ASXL2 WILD-TYPE 145 180 135
'ASXL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S1612.  Gene #167: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ASXL2 MUTATED 1 5 3 3 3 1 2
ASXL2 WILD-TYPE 71 104 87 41 46 45 66
'ASXL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S1613.  Gene #167: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ASXL2 MUTATED 4 9 5
ASXL2 WILD-TYPE 171 202 85
'ASXL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S1614.  Gene #167: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ASXL2 MUTATED 2 7 3 6
ASXL2 WILD-TYPE 68 179 128 83
'ASXL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.79

Table S1615.  Gene #167: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ASXL2 MUTATED 2 10 4
ASXL2 WILD-TYPE 139 172 85
'ASXL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S1616.  Gene #167: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ASXL2 MUTATED 4 10 2
ASXL2 WILD-TYPE 90 223 83
'CPA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S1617.  Gene #168: 'CPA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CPA4 MUTATED 1 6 4 3
CPA4 WILD-TYPE 64 204 68 128
'CPA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.97

Table S1618.  Gene #168: 'CPA4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CPA4 MUTATED 4 2 7
CPA4 WILD-TYPE 127 136 154
'CPA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S1619.  Gene #168: 'CPA4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
CPA4 MUTATED 0 2 1
CPA4 WILD-TYPE 42 69 62
'CPA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S1620.  Gene #168: 'CPA4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
CPA4 MUTATED 1 0 1 1 0
CPA4 WILD-TYPE 38 32 42 29 32
'CPA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.83

Table S1621.  Gene #168: 'CPA4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CPA4 MUTATED 3 9 2
CPA4 WILD-TYPE 147 176 141
'CPA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.75

Table S1622.  Gene #168: 'CPA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CPA4 MUTATED 0 6 1 0 2 1 4
CPA4 WILD-TYPE 72 103 89 44 47 45 64
'CPA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 0.56

Table S1623.  Gene #168: 'CPA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CPA4 MUTATED 1 9 4
CPA4 WILD-TYPE 174 202 86

Figure S196.  Get High-res Image Gene #168: 'CPA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CPA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.86

Table S1624.  Gene #168: 'CPA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CPA4 MUTATED 0 6 3 5
CPA4 WILD-TYPE 70 180 128 84
'CPA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S1625.  Gene #168: 'CPA4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CPA4 MUTATED 4 5 4
CPA4 WILD-TYPE 137 177 85
'CPA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.73

Table S1626.  Gene #168: 'CPA4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CPA4 MUTATED 0 10 3
CPA4 WILD-TYPE 94 223 82
'SNX9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S1627.  Gene #169: 'SNX9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SNX9 MUTATED 0 4 1 2
SNX9 WILD-TYPE 65 206 71 129
'SNX9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.95

Table S1628.  Gene #169: 'SNX9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SNX9 MUTATED 0 3 3
SNX9 WILD-TYPE 131 135 158
'SNX9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.95

Table S1629.  Gene #169: 'SNX9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SNX9 MUTATED 4 1 2
SNX9 WILD-TYPE 146 184 141
'SNX9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S1630.  Gene #169: 'SNX9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SNX9 MUTATED 1 1 1 2 1 1 0
SNX9 WILD-TYPE 71 108 89 42 48 45 68
'SNX9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S1631.  Gene #169: 'SNX9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SNX9 MUTATED 3 2 1
SNX9 WILD-TYPE 172 209 89
'SNX9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.91

Table S1632.  Gene #169: 'SNX9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SNX9 MUTATED 2 3 0 1
SNX9 WILD-TYPE 68 183 131 88
'SNX9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.96

Table S1633.  Gene #169: 'SNX9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SNX9 MUTATED 1 2 3
SNX9 WILD-TYPE 140 180 86
'SNX9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1634.  Gene #169: 'SNX9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SNX9 MUTATED 1 4 1
SNX9 WILD-TYPE 93 229 84
'BAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.95

Table S1635.  Gene #170: 'BAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
BAP1 MUTATED 1 2 3 2
BAP1 WILD-TYPE 64 208 69 129
'BAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.97

Table S1636.  Gene #170: 'BAP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
BAP1 MUTATED 2 0 3
BAP1 WILD-TYPE 129 138 158
'BAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1637.  Gene #170: 'BAP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
BAP1 MUTATED 1 1 1
BAP1 WILD-TYPE 41 70 62
'BAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S1638.  Gene #170: 'BAP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
BAP1 MUTATED 1 1 0 1 0
BAP1 WILD-TYPE 38 31 43 29 32
'BAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S1639.  Gene #170: 'BAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
BAP1 MUTATED 3 4 1
BAP1 WILD-TYPE 147 181 142
'BAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.88

Table S1640.  Gene #170: 'BAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
BAP1 MUTATED 2 3 0 1 0 2 0
BAP1 WILD-TYPE 70 106 90 43 49 44 68
'BAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S1641.  Gene #170: 'BAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
BAP1 MUTATED 4 3 0
BAP1 WILD-TYPE 171 208 90
'BAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S1642.  Gene #170: 'BAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
BAP1 MUTATED 2 3 2 0
BAP1 WILD-TYPE 68 183 129 89
'BAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0559 (Fisher's exact test), Q value = 0.62

Table S1643.  Gene #170: 'BAP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
BAP1 MUTATED 0 5 0
BAP1 WILD-TYPE 141 177 89
'BAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S1644.  Gene #170: 'BAP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
BAP1 MUTATED 2 3 0
BAP1 WILD-TYPE 92 230 85
'PCSK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.75

Table S1645.  Gene #171: 'PCSK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PCSK4 MUTATED 3 2 0 3
PCSK4 WILD-TYPE 62 208 72 128
'PCSK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S1646.  Gene #171: 'PCSK4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PCSK4 MUTATED 1 2 4
PCSK4 WILD-TYPE 130 136 157
'PCSK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S1647.  Gene #171: 'PCSK4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PCSK4 MUTATED 2 4 2
PCSK4 WILD-TYPE 148 181 141
'PCSK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S1648.  Gene #171: 'PCSK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PCSK4 MUTATED 1 3 2 0 1 0 1
PCSK4 WILD-TYPE 71 106 88 44 48 46 67
'PCSK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.88

Table S1649.  Gene #171: 'PCSK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PCSK4 MUTATED 1 6 1
PCSK4 WILD-TYPE 174 205 89
'PCSK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S1650.  Gene #171: 'PCSK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PCSK4 MUTATED 0 5 1 2
PCSK4 WILD-TYPE 70 181 130 87
'PCSK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S1651.  Gene #171: 'PCSK4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PCSK4 MUTATED 1 5 1
PCSK4 WILD-TYPE 140 177 88
'PCSK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S1652.  Gene #171: 'PCSK4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PCSK4 MUTATED 0 5 2
PCSK4 WILD-TYPE 94 228 83
'FOLH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S1653.  Gene #172: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
FOLH1 MUTATED 1 13 5 8
FOLH1 WILD-TYPE 64 197 67 123
'FOLH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S1654.  Gene #172: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
FOLH1 MUTATED 5 11 9
FOLH1 WILD-TYPE 126 127 152
'FOLH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.95

Table S1655.  Gene #172: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
FOLH1 MUTATED 0 4 4
FOLH1 WILD-TYPE 42 67 59
'FOLH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0671 (Fisher's exact test), Q value = 0.65

Table S1656.  Gene #172: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
FOLH1 MUTATED 1 0 5 2 0
FOLH1 WILD-TYPE 38 32 38 28 32
'FOLH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.039 (Fisher's exact test), Q value = 0.58

Table S1657.  Gene #172: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
FOLH1 MUTATED 4 17 7
FOLH1 WILD-TYPE 146 168 136

Figure S197.  Get High-res Image Gene #172: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FOLH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.84

Table S1658.  Gene #172: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
FOLH1 MUTATED 3 7 11 1 3 1 2
FOLH1 WILD-TYPE 69 102 79 43 46 45 66
'FOLH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.81

Table S1659.  Gene #172: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
FOLH1 MUTATED 7 17 3
FOLH1 WILD-TYPE 168 194 87
'FOLH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0207 (Fisher's exact test), Q value = 0.46

Table S1660.  Gene #172: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
FOLH1 MUTATED 4 9 3 11
FOLH1 WILD-TYPE 66 177 128 78

Figure S198.  Get High-res Image Gene #172: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FOLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0994 (Fisher's exact test), Q value = 0.73

Table S1661.  Gene #172: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
FOLH1 MUTATED 6 15 2
FOLH1 WILD-TYPE 135 167 87
'FOLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S1662.  Gene #172: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
FOLH1 MUTATED 4 15 4
FOLH1 WILD-TYPE 90 218 81
'ERLIN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S1663.  Gene #173: 'ERLIN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ERLIN2 MUTATED 1 2 1 2
ERLIN2 WILD-TYPE 64 208 71 129
'ERLIN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.94

Table S1664.  Gene #173: 'ERLIN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ERLIN2 MUTATED 0 3 2
ERLIN2 WILD-TYPE 131 135 159
'ERLIN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.84

Table S1665.  Gene #173: 'ERLIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ERLIN2 MUTATED 0 4 2
ERLIN2 WILD-TYPE 150 181 141
'ERLIN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.95

Table S1666.  Gene #173: 'ERLIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ERLIN2 MUTATED 0 1 2 0 1 2 0
ERLIN2 WILD-TYPE 72 108 88 44 48 44 68
'ERLIN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S1667.  Gene #173: 'ERLIN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ERLIN2 MUTATED 1 4 1
ERLIN2 WILD-TYPE 174 207 89
'ERLIN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 0.97

Table S1668.  Gene #173: 'ERLIN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ERLIN2 MUTATED 1 3 0 2
ERLIN2 WILD-TYPE 69 183 131 87
'ERLIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.84

Table S1669.  Gene #173: 'ERLIN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ERLIN2 MUTATED 0 3 2
ERLIN2 WILD-TYPE 141 179 87
'ERLIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.88

Table S1670.  Gene #173: 'ERLIN2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ERLIN2 MUTATED 0 5 0
ERLIN2 WILD-TYPE 94 228 85
'SBSN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S1671.  Gene #174: 'SBSN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SBSN MUTATED 2 3 2 5
SBSN WILD-TYPE 63 207 70 126
'SBSN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.96

Table S1672.  Gene #174: 'SBSN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SBSN MUTATED 1 5 5
SBSN WILD-TYPE 130 133 156
'SBSN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S1673.  Gene #174: 'SBSN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SBSN MUTATED 0 2 1
SBSN WILD-TYPE 42 69 62
'SBSN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S1674.  Gene #174: 'SBSN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SBSN MUTATED 1 0 2 0 0
SBSN WILD-TYPE 38 32 41 30 32
'SBSN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.96

Table S1675.  Gene #174: 'SBSN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SBSN MUTATED 3 3 6
SBSN WILD-TYPE 147 182 137
'SBSN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S1676.  Gene #174: 'SBSN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SBSN MUTATED 2 2 3 0 3 0 2
SBSN WILD-TYPE 70 107 87 44 46 46 66
'SBSN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.48

Table S1677.  Gene #174: 'SBSN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SBSN MUTATED 2 10 0
SBSN WILD-TYPE 173 201 90

Figure S199.  Get High-res Image Gene #174: 'SBSN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SBSN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0325 (Fisher's exact test), Q value = 0.54

Table S1678.  Gene #174: 'SBSN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SBSN MUTATED 2 5 0 5
SBSN WILD-TYPE 68 181 131 84

Figure S200.  Get High-res Image Gene #174: 'SBSN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SBSN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0941 (Fisher's exact test), Q value = 0.72

Table S1679.  Gene #174: 'SBSN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SBSN MUTATED 1 8 1
SBSN WILD-TYPE 140 174 88
'SBSN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S1680.  Gene #174: 'SBSN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SBSN MUTATED 2 7 1
SBSN WILD-TYPE 92 226 84
'NID2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0682 (Fisher's exact test), Q value = 0.65

Table S1681.  Gene #175: 'NID2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
NID2 MUTATED 2 10 6 15
NID2 WILD-TYPE 63 200 66 116
'NID2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00884 (Fisher's exact test), Q value = 0.33

Table S1682.  Gene #175: 'NID2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
NID2 MUTATED 3 8 18
NID2 WILD-TYPE 128 130 143

Figure S201.  Get High-res Image Gene #175: 'NID2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NID2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0825 (Fisher's exact test), Q value = 0.68

Table S1683.  Gene #175: 'NID2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
NID2 MUTATED 3 1 6
NID2 WILD-TYPE 39 70 57
'NID2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0643 (Fisher's exact test), Q value = 0.64

Table S1684.  Gene #175: 'NID2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
NID2 MUTATED 0 1 2 2 5
NID2 WILD-TYPE 39 31 41 28 27
'NID2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.96

Table S1685.  Gene #175: 'NID2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
NID2 MUTATED 8 17 8
NID2 WILD-TYPE 142 168 135
'NID2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S1686.  Gene #175: 'NID2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
NID2 MUTATED 3 11 9 2 1 3 4
NID2 WILD-TYPE 69 98 81 42 48 43 64
'NID2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0263 (Fisher's exact test), Q value = 0.5

Table S1687.  Gene #175: 'NID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
NID2 MUTATED 5 19 8
NID2 WILD-TYPE 170 192 82

Figure S202.  Get High-res Image Gene #175: 'NID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'NID2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0347 (Fisher's exact test), Q value = 0.55

Table S1688.  Gene #175: 'NID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
NID2 MUTATED 3 18 3 8
NID2 WILD-TYPE 67 168 128 81

Figure S203.  Get High-res Image Gene #175: 'NID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.79

Table S1689.  Gene #175: 'NID2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
NID2 MUTATED 6 18 5
NID2 WILD-TYPE 135 164 84
'NID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.85

Table S1690.  Gene #175: 'NID2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
NID2 MUTATED 3 18 8
NID2 WILD-TYPE 91 215 77
'SAMD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S1691.  Gene #176: 'SAMD7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SAMD7 MUTATED 2 5 1 3
SAMD7 WILD-TYPE 63 205 71 128
'SAMD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.96

Table S1692.  Gene #176: 'SAMD7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SAMD7 MUTATED 1 5 4
SAMD7 WILD-TYPE 130 133 157
'SAMD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S1693.  Gene #176: 'SAMD7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SAMD7 MUTATED 1 1 2
SAMD7 WILD-TYPE 41 70 61
'SAMD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S1694.  Gene #176: 'SAMD7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SAMD7 MUTATED 1 1 0 0 2
SAMD7 WILD-TYPE 38 31 43 30 30
'SAMD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S1695.  Gene #176: 'SAMD7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SAMD7 MUTATED 2 6 3
SAMD7 WILD-TYPE 148 179 140
'SAMD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S1696.  Gene #176: 'SAMD7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SAMD7 MUTATED 2 3 3 0 2 1 0
SAMD7 WILD-TYPE 70 106 87 44 47 45 68
'SAMD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S1697.  Gene #176: 'SAMD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SAMD7 MUTATED 3 7 1
SAMD7 WILD-TYPE 172 204 89
'SAMD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.95

Table S1698.  Gene #176: 'SAMD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SAMD7 MUTATED 2 7 1 1
SAMD7 WILD-TYPE 68 179 130 88
'SAMD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S1699.  Gene #176: 'SAMD7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SAMD7 MUTATED 4 4 1
SAMD7 WILD-TYPE 137 178 88
'SAMD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S1700.  Gene #176: 'SAMD7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SAMD7 MUTATED 1 6 2
SAMD7 WILD-TYPE 93 227 83
'SERPINB5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S1701.  Gene #177: 'SERPINB5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SERPINB5 MUTATED 2 2 1 4
SERPINB5 WILD-TYPE 63 208 71 127
'SERPINB5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S1702.  Gene #177: 'SERPINB5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SERPINB5 MUTATED 3 2 4
SERPINB5 WILD-TYPE 128 136 157
'SERPINB5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S1703.  Gene #177: 'SERPINB5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SERPINB5 MUTATED 0 3 2
SERPINB5 WILD-TYPE 42 68 61
'SERPINB5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0546 (Fisher's exact test), Q value = 0.62

Table S1704.  Gene #177: 'SERPINB5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SERPINB5 MUTATED 3 0 0 2 0
SERPINB5 WILD-TYPE 36 32 43 28 32
'SERPINB5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S1705.  Gene #177: 'SERPINB5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SERPINB5 MUTATED 3 5 1
SERPINB5 WILD-TYPE 147 180 142
'SERPINB5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.88

Table S1706.  Gene #177: 'SERPINB5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SERPINB5 MUTATED 2 1 4 0 2 0 0
SERPINB5 WILD-TYPE 70 108 86 44 47 46 68
'SERPINB5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S1707.  Gene #177: 'SERPINB5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SERPINB5 MUTATED 2 5 2
SERPINB5 WILD-TYPE 173 206 88
'SERPINB5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S1708.  Gene #177: 'SERPINB5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SERPINB5 MUTATED 1 5 2 1
SERPINB5 WILD-TYPE 69 181 129 88
'SERPINB5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1709.  Gene #177: 'SERPINB5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SERPINB5 MUTATED 3 4 2
SERPINB5 WILD-TYPE 138 178 87
'SERPINB5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S1710.  Gene #177: 'SERPINB5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SERPINB5 MUTATED 1 6 2
SERPINB5 WILD-TYPE 93 227 83
'SLC39A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.93

Table S1711.  Gene #178: 'SLC39A6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SLC39A6 MUTATED 3 4 4 3
SLC39A6 WILD-TYPE 62 206 68 128
'SLC39A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0475 (Fisher's exact test), Q value = 0.62

Table S1712.  Gene #178: 'SLC39A6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SLC39A6 MUTATED 1 8 3
SLC39A6 WILD-TYPE 130 130 158

Figure S204.  Get High-res Image Gene #178: 'SLC39A6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SLC39A6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S1713.  Gene #178: 'SLC39A6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SLC39A6 MUTATED 1 1 2
SLC39A6 WILD-TYPE 41 70 61
'SLC39A6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S1714.  Gene #178: 'SLC39A6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SLC39A6 MUTATED 0 1 2 1 0
SLC39A6 WILD-TYPE 39 31 41 29 32
'SLC39A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.96

Table S1715.  Gene #178: 'SLC39A6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SLC39A6 MUTATED 2 6 6
SLC39A6 WILD-TYPE 148 179 137
'SLC39A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.95

Table S1716.  Gene #178: 'SLC39A6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SLC39A6 MUTATED 1 4 3 1 0 4 1
SLC39A6 WILD-TYPE 71 105 87 43 49 42 67
'SLC39A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0713 (Fisher's exact test), Q value = 0.65

Table S1717.  Gene #178: 'SLC39A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SLC39A6 MUTATED 3 5 6
SLC39A6 WILD-TYPE 172 206 84
'SLC39A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0474 (Fisher's exact test), Q value = 0.62

Table S1718.  Gene #178: 'SLC39A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SLC39A6 MUTATED 3 8 0 3
SLC39A6 WILD-TYPE 67 178 131 86

Figure S205.  Get High-res Image Gene #178: 'SLC39A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SLC39A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.06 (Fisher's exact test), Q value = 0.62

Table S1719.  Gene #178: 'SLC39A6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SLC39A6 MUTATED 3 3 6
SLC39A6 WILD-TYPE 138 179 83
'SLC39A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.77

Table S1720.  Gene #178: 'SLC39A6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SLC39A6 MUTATED 0 9 3
SLC39A6 WILD-TYPE 94 224 82
'PHKA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00145 (Fisher's exact test), Q value = 0.12

Table S1721.  Gene #179: 'PHKA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PHKA1 MUTATED 2 1 0 9
PHKA1 WILD-TYPE 63 209 72 122

Figure S206.  Get High-res Image Gene #179: 'PHKA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PHKA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.97

Table S1722.  Gene #179: 'PHKA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PHKA1 MUTATED 2 6 3
PHKA1 WILD-TYPE 129 132 158
'PHKA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.97

Table S1723.  Gene #179: 'PHKA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
PHKA1 MUTATED 3 2 1
PHKA1 WILD-TYPE 39 69 62
'PHKA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.97

Table S1724.  Gene #179: 'PHKA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
PHKA1 MUTATED 0 2 2 0 2
PHKA1 WILD-TYPE 39 30 41 30 30
'PHKA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.77

Table S1725.  Gene #179: 'PHKA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PHKA1 MUTATED 1 5 6
PHKA1 WILD-TYPE 149 180 137
'PHKA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 0.99

Table S1726.  Gene #179: 'PHKA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PHKA1 MUTATED 1 6 3 0 1 1 0
PHKA1 WILD-TYPE 71 103 87 44 48 45 68
'PHKA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S1727.  Gene #179: 'PHKA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PHKA1 MUTATED 3 8 1
PHKA1 WILD-TYPE 172 203 89
'PHKA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.93

Table S1728.  Gene #179: 'PHKA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PHKA1 MUTATED 1 6 1 4
PHKA1 WILD-TYPE 69 180 130 85
'PHKA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S1729.  Gene #179: 'PHKA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PHKA1 MUTATED 2 7 2
PHKA1 WILD-TYPE 139 175 87
'PHKA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0527 (Fisher's exact test), Q value = 0.62

Table S1730.  Gene #179: 'PHKA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PHKA1 MUTATED 0 10 1
PHKA1 WILD-TYPE 94 223 84
'KRT26 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S1731.  Gene #180: 'KRT26 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
KRT26 MUTATED 0 3 2 4
KRT26 WILD-TYPE 65 207 70 127
'KRT26 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.84

Table S1732.  Gene #180: 'KRT26 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
KRT26 MUTATED 2 5 1
KRT26 WILD-TYPE 129 133 160
'KRT26 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S1733.  Gene #180: 'KRT26 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
KRT26 MUTATED 2 5 2
KRT26 WILD-TYPE 148 180 141
'KRT26 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S1734.  Gene #180: 'KRT26 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
KRT26 MUTATED 0 3 2 0 1 2 1
KRT26 WILD-TYPE 72 106 88 44 48 44 67
'KRT26 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.89

Table S1735.  Gene #180: 'KRT26 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
KRT26 MUTATED 1 6 2
KRT26 WILD-TYPE 174 205 88
'KRT26 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.83

Table S1736.  Gene #180: 'KRT26 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
KRT26 MUTATED 0 7 1 1
KRT26 WILD-TYPE 70 179 130 88
'KRT26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S1737.  Gene #180: 'KRT26 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
KRT26 MUTATED 2 3 3
KRT26 WILD-TYPE 139 179 86
'KRT26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0454 (Fisher's exact test), Q value = 0.61

Table S1738.  Gene #180: 'KRT26 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
KRT26 MUTATED 0 8 0
KRT26 WILD-TYPE 94 225 85

Figure S207.  Get High-res Image Gene #180: 'KRT26 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CALCRL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0472 (Fisher's exact test), Q value = 0.62

Table S1739.  Gene #181: 'CALCRL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CALCRL MUTATED 3 2 1 7
CALCRL WILD-TYPE 62 208 71 124

Figure S208.  Get High-res Image Gene #181: 'CALCRL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CALCRL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.73

Table S1740.  Gene #181: 'CALCRL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CALCRL MUTATED 1 4 8
CALCRL WILD-TYPE 130 134 153
'CALCRL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S1741.  Gene #181: 'CALCRL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CALCRL MUTATED 3 5 5
CALCRL WILD-TYPE 147 180 138
'CALCRL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S1742.  Gene #181: 'CALCRL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CALCRL MUTATED 0 4 3 0 2 1 3
CALCRL WILD-TYPE 72 105 87 44 47 45 65
'CALCRL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0413 (Fisher's exact test), Q value = 0.58

Table S1743.  Gene #181: 'CALCRL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CALCRL MUTATED 3 10 0
CALCRL WILD-TYPE 172 201 90

Figure S209.  Get High-res Image Gene #181: 'CALCRL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CALCRL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.84

Table S1744.  Gene #181: 'CALCRL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CALCRL MUTATED 0 5 3 5
CALCRL WILD-TYPE 70 181 128 84
'CALCRL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S1745.  Gene #181: 'CALCRL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CALCRL MUTATED 3 7 2
CALCRL WILD-TYPE 138 175 87
'CALCRL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0335 (Fisher's exact test), Q value = 0.54

Table S1746.  Gene #181: 'CALCRL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CALCRL MUTATED 0 11 1
CALCRL WILD-TYPE 94 222 84

Figure S210.  Get High-res Image Gene #181: 'CALCRL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'STRN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1747.  Gene #182: 'STRN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
STRN3 MUTATED 1 5 1 3
STRN3 WILD-TYPE 64 205 71 128
'STRN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S1748.  Gene #182: 'STRN3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
STRN3 MUTATED 2 4 4
STRN3 WILD-TYPE 129 134 157
'STRN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.83

Table S1749.  Gene #182: 'STRN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
STRN3 MUTATED 0 1 4
STRN3 WILD-TYPE 42 70 59
'STRN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S1750.  Gene #182: 'STRN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
STRN3 MUTATED 0 1 2 1 1
STRN3 WILD-TYPE 39 31 41 29 31
'STRN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.78

Table S1751.  Gene #182: 'STRN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
STRN3 MUTATED 1 7 2
STRN3 WILD-TYPE 149 178 141
'STRN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S1752.  Gene #182: 'STRN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
STRN3 MUTATED 0 3 3 2 0 1 1
STRN3 WILD-TYPE 72 106 87 42 49 45 67
'STRN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.95

Table S1753.  Gene #182: 'STRN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
STRN3 MUTATED 5 5 0
STRN3 WILD-TYPE 170 206 90
'STRN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S1754.  Gene #182: 'STRN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
STRN3 MUTATED 1 3 3 3
STRN3 WILD-TYPE 69 183 128 86
'STRN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.94

Table S1755.  Gene #182: 'STRN3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
STRN3 MUTATED 5 2 3
STRN3 WILD-TYPE 136 180 86
'STRN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1756.  Gene #182: 'STRN3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
STRN3 MUTATED 2 6 2
STRN3 WILD-TYPE 92 227 83
'RPS16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.88

Table S1757.  Gene #183: 'RPS16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
RPS16 MUTATED 0 0 1 2
RPS16 WILD-TYPE 65 210 71 129
'RPS16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S1758.  Gene #183: 'RPS16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
RPS16 MUTATED 0 1 2
RPS16 WILD-TYPE 131 137 159
'RPS16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.73

Table S1759.  Gene #183: 'RPS16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
RPS16 MUTATED 0 3 0
RPS16 WILD-TYPE 150 182 143
'RPS16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S1760.  Gene #183: 'RPS16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
RPS16 MUTATED 0 1 1 0 0 1 0
RPS16 WILD-TYPE 72 108 89 44 49 45 68
'RPS16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1761.  Gene #183: 'RPS16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
RPS16 MUTATED 1 2 0
RPS16 WILD-TYPE 174 209 90
'RPS16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S1762.  Gene #183: 'RPS16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
RPS16 MUTATED 0 2 0 1
RPS16 WILD-TYPE 70 184 131 88
'RPS16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S1763.  Gene #183: 'RPS16 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
RPS16 MUTATED 2 1 0
RPS16 WILD-TYPE 139 181 89
'RPS16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1764.  Gene #183: 'RPS16 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
RPS16 MUTATED 0 2 1
RPS16 WILD-TYPE 94 231 84
'NPR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.9

Table S1765.  Gene #184: 'NPR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
NPR1 MUTATED 2 3 3 6
NPR1 WILD-TYPE 63 207 69 125
'NPR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S1766.  Gene #184: 'NPR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
NPR1 MUTATED 2 6 4
NPR1 WILD-TYPE 129 132 157
'NPR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S1767.  Gene #184: 'NPR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
NPR1 MUTATED 1 2 3
NPR1 WILD-TYPE 41 69 60
'NPR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.93

Table S1768.  Gene #184: 'NPR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
NPR1 MUTATED 0 0 3 1 2
NPR1 WILD-TYPE 39 32 40 29 30
'NPR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.83

Table S1769.  Gene #184: 'NPR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
NPR1 MUTATED 2 9 3
NPR1 WILD-TYPE 148 176 140
'NPR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S1770.  Gene #184: 'NPR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
NPR1 MUTATED 1 4 5 0 2 1 1
NPR1 WILD-TYPE 71 105 85 44 47 45 67
'NPR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0852 (Fisher's exact test), Q value = 0.69

Table S1771.  Gene #184: 'NPR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
NPR1 MUTATED 2 10 1
NPR1 WILD-TYPE 173 201 89
'NPR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.78

Table S1772.  Gene #184: 'NPR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
NPR1 MUTATED 0 6 2 5
NPR1 WILD-TYPE 70 180 129 84
'NPR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S1773.  Gene #184: 'NPR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
NPR1 MUTATED 3 7 2
NPR1 WILD-TYPE 138 175 87
'NPR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0341 (Fisher's exact test), Q value = 0.55

Table S1774.  Gene #184: 'NPR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
NPR1 MUTATED 0 11 1
NPR1 WILD-TYPE 94 222 84

Figure S211.  Get High-res Image Gene #184: 'NPR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KARS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.84

Table S1775.  Gene #185: 'KARS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
KARS MUTATED 1 2 3 1
KARS WILD-TYPE 64 208 69 130
'KARS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.78

Table S1776.  Gene #185: 'KARS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
KARS MUTATED 1 5 1
KARS WILD-TYPE 130 133 160
'KARS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S1777.  Gene #185: 'KARS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
KARS MUTATED 1 4 2
KARS WILD-TYPE 149 181 141
'KARS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.9

Table S1778.  Gene #185: 'KARS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
KARS MUTATED 0 2 3 0 0 2 0
KARS WILD-TYPE 72 107 87 44 49 44 68
'KARS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0696 (Fisher's exact test), Q value = 0.65

Table S1779.  Gene #185: 'KARS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
KARS MUTATED 0 6 1
KARS WILD-TYPE 175 205 89
'KARS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.73

Table S1780.  Gene #185: 'KARS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
KARS MUTATED 0 4 0 3
KARS WILD-TYPE 70 182 131 86
'KARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S1781.  Gene #185: 'KARS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
KARS MUTATED 2 4 1
KARS WILD-TYPE 139 178 88
'KARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0926 (Fisher's exact test), Q value = 0.72

Table S1782.  Gene #185: 'KARS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
KARS MUTATED 0 7 0
KARS WILD-TYPE 94 226 85
'FRMD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S1783.  Gene #186: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
FRMD6 MUTATED 2 4 2 6
FRMD6 WILD-TYPE 63 206 70 125
'FRMD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.98

Table S1784.  Gene #186: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
FRMD6 MUTATED 2 3 7
FRMD6 WILD-TYPE 129 135 154
'FRMD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S1785.  Gene #186: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
FRMD6 MUTATED 1 1 3
FRMD6 WILD-TYPE 41 70 60
'FRMD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S1786.  Gene #186: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
FRMD6 MUTATED 0 1 1 2 1
FRMD6 WILD-TYPE 39 31 42 28 31
'FRMD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.83

Table S1787.  Gene #186: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
FRMD6 MUTATED 2 9 3
FRMD6 WILD-TYPE 148 176 140
'FRMD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.81

Table S1788.  Gene #186: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
FRMD6 MUTATED 0 6 2 0 3 2 1
FRMD6 WILD-TYPE 72 103 88 44 46 44 67
'FRMD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.84

Table S1789.  Gene #186: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
FRMD6 MUTATED 2 9 3
FRMD6 WILD-TYPE 173 202 87
'FRMD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.83

Table S1790.  Gene #186: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
FRMD6 MUTATED 1 8 1 4
FRMD6 WILD-TYPE 69 178 130 85
'FRMD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S1791.  Gene #186: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
FRMD6 MUTATED 4 4 4
FRMD6 WILD-TYPE 137 178 85
'FRMD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.73

Table S1792.  Gene #186: 'FRMD6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
FRMD6 MUTATED 0 8 4
FRMD6 WILD-TYPE 94 225 81
'TMC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S1793.  Gene #187: 'TMC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
TMC4 MUTATED 2 3 2 3
TMC4 WILD-TYPE 63 207 70 128
'TMC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.97

Table S1794.  Gene #187: 'TMC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
TMC4 MUTATED 1 4 5
TMC4 WILD-TYPE 130 134 156
'TMC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.88

Table S1795.  Gene #187: 'TMC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
TMC4 MUTATED 1 6 3
TMC4 WILD-TYPE 149 179 140
'TMC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S1796.  Gene #187: 'TMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
TMC4 MUTATED 1 3 2 0 2 2 0
TMC4 WILD-TYPE 71 106 88 44 47 44 68
'TMC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 0.65

Table S1797.  Gene #187: 'TMC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
TMC4 MUTATED 2 8 0
TMC4 WILD-TYPE 173 203 90
'TMC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S1798.  Gene #187: 'TMC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
TMC4 MUTATED 0 6 2 2
TMC4 WILD-TYPE 70 180 129 87
'TMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.85

Table S1799.  Gene #187: 'TMC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
TMC4 MUTATED 5 4 0
TMC4 WILD-TYPE 136 178 89
'TMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.93

Table S1800.  Gene #187: 'TMC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
TMC4 MUTATED 0 7 2
TMC4 WILD-TYPE 94 226 83
'ARMC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.78

Table S1801.  Gene #188: 'ARMC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ARMC3 MUTATED 4 7 1 10
ARMC3 WILD-TYPE 61 203 71 121
'ARMC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1802.  Gene #188: 'ARMC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ARMC3 MUTATED 5 6 6
ARMC3 WILD-TYPE 126 132 155
'ARMC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.97

Table S1803.  Gene #188: 'ARMC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ARMC3 MUTATED 2 1 4
ARMC3 WILD-TYPE 40 70 59
'ARMC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S1804.  Gene #188: 'ARMC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ARMC3 MUTATED 2 0 2 2 1
ARMC3 WILD-TYPE 37 32 41 28 31
'ARMC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S1805.  Gene #188: 'ARMC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ARMC3 MUTATED 6 10 6
ARMC3 WILD-TYPE 144 175 137
'ARMC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S1806.  Gene #188: 'ARMC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ARMC3 MUTATED 4 5 6 1 4 0 2
ARMC3 WILD-TYPE 68 104 84 43 45 46 66
'ARMC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.83

Table S1807.  Gene #188: 'ARMC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ARMC3 MUTATED 4 13 4
ARMC3 WILD-TYPE 171 198 86
'ARMC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S1808.  Gene #188: 'ARMC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ARMC3 MUTATED 2 9 4 6
ARMC3 WILD-TYPE 68 177 127 83
'ARMC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S1809.  Gene #188: 'ARMC3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ARMC3 MUTATED 6 9 2
ARMC3 WILD-TYPE 135 173 87
'ARMC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S1810.  Gene #188: 'ARMC3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ARMC3 MUTATED 2 10 5
ARMC3 WILD-TYPE 92 223 80
'PIK3R4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.54

Table S1811.  Gene #189: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PIK3R4 MUTATED 0 7 7 6
PIK3R4 WILD-TYPE 65 203 65 125

Figure S212.  Get High-res Image Gene #189: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PIK3R4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.84

Table S1812.  Gene #189: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PIK3R4 MUTATED 3 9 5
PIK3R4 WILD-TYPE 128 129 156
'PIK3R4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S1813.  Gene #189: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
PIK3R4 MUTATED 1 2 3
PIK3R4 WILD-TYPE 41 69 60
'PIK3R4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S1814.  Gene #189: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
PIK3R4 MUTATED 0 1 2 1 2
PIK3R4 WILD-TYPE 39 31 41 29 30
'PIK3R4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.76

Table S1815.  Gene #189: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PIK3R4 MUTATED 3 12 5
PIK3R4 WILD-TYPE 147 173 138
'PIK3R4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.95

Table S1816.  Gene #189: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PIK3R4 MUTATED 1 4 7 1 1 4 2
PIK3R4 WILD-TYPE 71 105 83 43 48 42 66
'PIK3R4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00628 (Fisher's exact test), Q value = 0.28

Table S1817.  Gene #189: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PIK3R4 MUTATED 2 15 2
PIK3R4 WILD-TYPE 173 196 88

Figure S213.  Get High-res Image Gene #189: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PIK3R4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.95

Table S1818.  Gene #189: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PIK3R4 MUTATED 1 11 3 4
PIK3R4 WILD-TYPE 69 175 128 85
'PIK3R4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S1819.  Gene #189: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PIK3R4 MUTATED 4 8 5
PIK3R4 WILD-TYPE 137 174 84
'PIK3R4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.96

Table S1820.  Gene #189: 'PIK3R4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PIK3R4 MUTATED 2 13 2
PIK3R4 WILD-TYPE 92 220 83
'ESRP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.79

Table S1821.  Gene #190: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ESRP1 MUTATED 1 1 2 4
ESRP1 WILD-TYPE 64 209 70 127
'ESRP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S1822.  Gene #190: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ESRP1 MUTATED 1 4 3
ESRP1 WILD-TYPE 130 134 158
'ESRP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1823.  Gene #190: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ESRP1 MUTATED 1 1 1
ESRP1 WILD-TYPE 41 70 62
'ESRP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S1824.  Gene #190: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ESRP1 MUTATED 0 0 2 0 1
ESRP1 WILD-TYPE 39 32 41 30 31
'ESRP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 0.62

Table S1825.  Gene #190: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ESRP1 MUTATED 0 6 2
ESRP1 WILD-TYPE 150 179 141
'ESRP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0859 (Fisher's exact test), Q value = 0.69

Table S1826.  Gene #190: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ESRP1 MUTATED 0 1 5 0 1 1 0
ESRP1 WILD-TYPE 72 108 85 44 48 45 68
'ESRP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0589 (Fisher's exact test), Q value = 0.62

Table S1827.  Gene #190: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ESRP1 MUTATED 1 7 0
ESRP1 WILD-TYPE 174 204 90
'ESRP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S1828.  Gene #190: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ESRP1 MUTATED 0 4 1 3
ESRP1 WILD-TYPE 70 182 130 86
'ESRP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.88

Table S1829.  Gene #190: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ESRP1 MUTATED 1 6 1
ESRP1 WILD-TYPE 140 176 88
'ESRP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0457 (Fisher's exact test), Q value = 0.61

Table S1830.  Gene #190: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ESRP1 MUTATED 0 8 0
ESRP1 WILD-TYPE 94 225 85

Figure S214.  Get High-res Image Gene #190: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GRN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.83

Table S1831.  Gene #191: 'GRN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
GRN MUTATED 0 1 2 3
GRN WILD-TYPE 65 209 70 128
'GRN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S1832.  Gene #191: 'GRN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
GRN MUTATED 1 1 4
GRN WILD-TYPE 130 137 157
'GRN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S1833.  Gene #191: 'GRN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
GRN MUTATED 1 4 1
GRN WILD-TYPE 149 181 142
'GRN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S1834.  Gene #191: 'GRN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
GRN MUTATED 0 2 1 0 1 1 1
GRN WILD-TYPE 72 107 89 44 48 45 67
'GRN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S1835.  Gene #191: 'GRN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
GRN MUTATED 2 4 0
GRN WILD-TYPE 173 207 90
'GRN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0784 (Fisher's exact test), Q value = 0.67

Table S1836.  Gene #191: 'GRN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
GRN MUTATED 3 2 0 1
GRN WILD-TYPE 67 184 131 88
'GRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S1837.  Gene #191: 'GRN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
GRN MUTATED 3 3 0
GRN WILD-TYPE 138 179 89
'GRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S1838.  Gene #191: 'GRN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
GRN MUTATED 2 3 1
GRN WILD-TYPE 92 230 84
'CYTH4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S1839.  Gene #192: 'CYTH4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CYTH4 MUTATED 0 4 1 0
CYTH4 WILD-TYPE 65 206 71 131
'CYTH4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S1840.  Gene #192: 'CYTH4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CYTH4 MUTATED 2 2 1
CYTH4 WILD-TYPE 129 136 160
'CYTH4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.73

Table S1841.  Gene #192: 'CYTH4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CYTH4 MUTATED 2 0 3
CYTH4 WILD-TYPE 148 185 140
'CYTH4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.89

Table S1842.  Gene #192: 'CYTH4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CYTH4 MUTATED 1 0 1 2 0 0 1
CYTH4 WILD-TYPE 71 109 89 42 49 46 67
'CYTH4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S1843.  Gene #192: 'CYTH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CYTH4 MUTATED 3 1 1
CYTH4 WILD-TYPE 172 210 89
'CYTH4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S1844.  Gene #192: 'CYTH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CYTH4 MUTATED 1 2 2 0
CYTH4 WILD-TYPE 69 184 129 89
'CYTH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.81

Table S1845.  Gene #192: 'CYTH4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CYTH4 MUTATED 0 1 2
CYTH4 WILD-TYPE 141 181 87
'CYTH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S1846.  Gene #192: 'CYTH4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CYTH4 MUTATED 1 1 1
CYTH4 WILD-TYPE 93 232 84
'SEC23IP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.94

Table S1847.  Gene #193: 'SEC23IP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SEC23IP MUTATED 1 2 1 5
SEC23IP WILD-TYPE 64 208 71 126
'SEC23IP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0782 (Fisher's exact test), Q value = 0.67

Table S1848.  Gene #193: 'SEC23IP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SEC23IP MUTATED 0 5 3
SEC23IP WILD-TYPE 131 133 158
'SEC23IP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.99

Table S1849.  Gene #193: 'SEC23IP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SEC23IP MUTATED 1 5 2
SEC23IP WILD-TYPE 149 180 141
'SEC23IP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S1850.  Gene #193: 'SEC23IP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SEC23IP MUTATED 1 1 4 0 1 0 1
SEC23IP WILD-TYPE 71 108 86 44 48 46 67
'SEC23IP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.84

Table S1851.  Gene #193: 'SEC23IP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SEC23IP MUTATED 1 5 3
SEC23IP WILD-TYPE 174 206 87
'SEC23IP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S1852.  Gene #193: 'SEC23IP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SEC23IP MUTATED 1 4 1 3
SEC23IP WILD-TYPE 69 182 130 86
'SEC23IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S1853.  Gene #193: 'SEC23IP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SEC23IP MUTATED 3 3 2
SEC23IP WILD-TYPE 138 179 87
'SEC23IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S1854.  Gene #193: 'SEC23IP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SEC23IP MUTATED 2 4 2
SEC23IP WILD-TYPE 92 229 83
'LARP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.73

Table S1855.  Gene #194: 'LARP4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
LARP4 MUTATED 3 2 0 4
LARP4 WILD-TYPE 62 208 72 127
'LARP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.84

Table S1856.  Gene #194: 'LARP4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
LARP4 MUTATED 0 3 4
LARP4 WILD-TYPE 131 135 157
'LARP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S1857.  Gene #194: 'LARP4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
LARP4 MUTATED 0 1 2
LARP4 WILD-TYPE 42 70 61
'LARP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S1858.  Gene #194: 'LARP4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
LARP4 MUTATED 0 1 2 0 0
LARP4 WILD-TYPE 39 31 41 30 32
'LARP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.73

Table S1859.  Gene #194: 'LARP4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
LARP4 MUTATED 0 5 4
LARP4 WILD-TYPE 150 180 139
'LARP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S1860.  Gene #194: 'LARP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
LARP4 MUTATED 0 2 3 1 1 2 0
LARP4 WILD-TYPE 72 107 87 43 48 44 68
'LARP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.82

Table S1861.  Gene #194: 'LARP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
LARP4 MUTATED 1 4 3
LARP4 WILD-TYPE 174 207 87
'LARP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0843 (Fisher's exact test), Q value = 0.68

Table S1862.  Gene #194: 'LARP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
LARP4 MUTATED 0 6 0 2
LARP4 WILD-TYPE 70 180 131 87
'LARP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0354 (Fisher's exact test), Q value = 0.56

Table S1863.  Gene #194: 'LARP4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
LARP4 MUTATED 0 3 4
LARP4 WILD-TYPE 141 179 85

Figure S215.  Get High-res Image Gene #194: 'LARP4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'LARP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S1864.  Gene #194: 'LARP4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
LARP4 MUTATED 0 5 2
LARP4 WILD-TYPE 94 228 83
'SLAMF8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 1

Table S1865.  Gene #195: 'SLAMF8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SLAMF8 MUTATED 0 4 1 4
SLAMF8 WILD-TYPE 65 206 71 127
'SLAMF8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.84

Table S1866.  Gene #195: 'SLAMF8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SLAMF8 MUTATED 1 2 6
SLAMF8 WILD-TYPE 130 136 155
'SLAMF8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.9

Table S1867.  Gene #195: 'SLAMF8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SLAMF8 MUTATED 2 6 1
SLAMF8 WILD-TYPE 148 179 142
'SLAMF8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S1868.  Gene #195: 'SLAMF8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SLAMF8 MUTATED 0 4 2 0 0 2 1
SLAMF8 WILD-TYPE 72 105 88 44 49 44 67
'SLAMF8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S1869.  Gene #195: 'SLAMF8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SLAMF8 MUTATED 4 4 1
SLAMF8 WILD-TYPE 171 207 89
'SLAMF8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S1870.  Gene #195: 'SLAMF8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SLAMF8 MUTATED 2 5 2 0
SLAMF8 WILD-TYPE 68 181 129 89
'SLAMF8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S1871.  Gene #195: 'SLAMF8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SLAMF8 MUTATED 2 5 1
SLAMF8 WILD-TYPE 139 177 88
'SLAMF8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S1872.  Gene #195: 'SLAMF8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SLAMF8 MUTATED 2 6 0
SLAMF8 WILD-TYPE 92 227 85
'IGDCC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0336 (Fisher's exact test), Q value = 0.54

Table S1873.  Gene #196: 'IGDCC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
IGDCC4 MUTATED 3 7 9 5
IGDCC4 WILD-TYPE 62 203 63 126

Figure S216.  Get High-res Image Gene #196: 'IGDCC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'IGDCC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.88

Table S1874.  Gene #196: 'IGDCC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
IGDCC4 MUTATED 3 9 6
IGDCC4 WILD-TYPE 128 129 155
'IGDCC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S1875.  Gene #196: 'IGDCC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
IGDCC4 MUTATED 1 3 3
IGDCC4 WILD-TYPE 41 68 60
'IGDCC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S1876.  Gene #196: 'IGDCC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
IGDCC4 MUTATED 0 2 2 2 1
IGDCC4 WILD-TYPE 39 30 41 28 31
'IGDCC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.9

Table S1877.  Gene #196: 'IGDCC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
IGDCC4 MUTATED 4 12 8
IGDCC4 WILD-TYPE 146 173 135
'IGDCC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 0.97

Table S1878.  Gene #196: 'IGDCC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
IGDCC4 MUTATED 1 5 6 2 1 5 4
IGDCC4 WILD-TYPE 71 104 84 42 48 41 64
'IGDCC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.78

Table S1879.  Gene #196: 'IGDCC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
IGDCC4 MUTATED 5 15 3
IGDCC4 WILD-TYPE 170 196 87
'IGDCC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0666 (Fisher's exact test), Q value = 0.65

Table S1880.  Gene #196: 'IGDCC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
IGDCC4 MUTATED 2 9 3 9
IGDCC4 WILD-TYPE 68 177 128 80
'IGDCC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S1881.  Gene #196: 'IGDCC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
IGDCC4 MUTATED 4 10 4
IGDCC4 WILD-TYPE 137 172 85
'IGDCC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.88

Table S1882.  Gene #196: 'IGDCC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
IGDCC4 MUTATED 2 14 2
IGDCC4 WILD-TYPE 92 219 83
'NPBWR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.84

Table S1883.  Gene #197: 'NPBWR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
NPBWR2 MUTATED 0 2 1 5
NPBWR2 WILD-TYPE 65 208 71 126
'NPBWR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.94

Table S1884.  Gene #197: 'NPBWR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
NPBWR2 MUTATED 3 4 1
NPBWR2 WILD-TYPE 128 134 160
'NPBWR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.83

Table S1885.  Gene #197: 'NPBWR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
NPBWR2 MUTATED 0 4 3
NPBWR2 WILD-TYPE 150 181 140
'NPBWR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0812 (Fisher's exact test), Q value = 0.68

Table S1886.  Gene #197: 'NPBWR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
NPBWR2 MUTATED 0 1 4 0 0 2 0
NPBWR2 WILD-TYPE 72 108 86 44 49 44 68
'NPBWR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.97

Table S1887.  Gene #197: 'NPBWR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
NPBWR2 MUTATED 1 5 2
NPBWR2 WILD-TYPE 174 206 88
'NPBWR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.83

Table S1888.  Gene #197: 'NPBWR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
NPBWR2 MUTATED 1 4 0 3
NPBWR2 WILD-TYPE 69 182 131 86
'NPBWR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.88

Table S1889.  Gene #197: 'NPBWR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
NPBWR2 MUTATED 1 6 1
NPBWR2 WILD-TYPE 140 176 88
'NPBWR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.88

Table S1890.  Gene #197: 'NPBWR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
NPBWR2 MUTATED 0 7 1
NPBWR2 WILD-TYPE 94 226 84
'FLRT3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S1891.  Gene #198: 'FLRT3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
FLRT3 MUTATED 1 3 1 3
FLRT3 WILD-TYPE 64 207 71 128
'FLRT3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1892.  Gene #198: 'FLRT3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
FLRT3 MUTATED 2 3 3
FLRT3 WILD-TYPE 129 135 158
'FLRT3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.76

Table S1893.  Gene #198: 'FLRT3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
FLRT3 MUTATED 1 0 3
FLRT3 WILD-TYPE 41 71 60
'FLRT3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0599 (Fisher's exact test), Q value = 0.62

Table S1894.  Gene #198: 'FLRT3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
FLRT3 MUTATED 0 0 1 0 3
FLRT3 WILD-TYPE 39 32 42 30 29
'FLRT3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S1895.  Gene #198: 'FLRT3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
FLRT3 MUTATED 2 3 3
FLRT3 WILD-TYPE 148 182 140
'FLRT3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S1896.  Gene #198: 'FLRT3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
FLRT3 MUTATED 2 2 2 0 1 1 0
FLRT3 WILD-TYPE 70 107 88 44 48 45 68
'FLRT3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S1897.  Gene #198: 'FLRT3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
FLRT3 MUTATED 2 5 1
FLRT3 WILD-TYPE 173 206 89
'FLRT3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S1898.  Gene #198: 'FLRT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
FLRT3 MUTATED 2 3 1 2
FLRT3 WILD-TYPE 68 183 130 87
'FLRT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.95

Table S1899.  Gene #198: 'FLRT3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
FLRT3 MUTATED 4 3 0
FLRT3 WILD-TYPE 137 179 89
'FLRT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.83

Table S1900.  Gene #198: 'FLRT3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
FLRT3 MUTATED 0 4 3
FLRT3 WILD-TYPE 94 229 82
'MYO1G MUTATION STATUS' versus 'CN_CNMF'

P value = 0.015 (Fisher's exact test), Q value = 0.39

Table S1901.  Gene #199: 'MYO1G MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MYO1G MUTATED 0 2 5 5
MYO1G WILD-TYPE 65 208 67 126

Figure S217.  Get High-res Image Gene #199: 'MYO1G MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MYO1G MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S1902.  Gene #199: 'MYO1G MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MYO1G MUTATED 3 5 3
MYO1G WILD-TYPE 128 133 158
'MYO1G MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1903.  Gene #199: 'MYO1G MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
MYO1G MUTATED 1 1 1
MYO1G WILD-TYPE 41 70 62
'MYO1G MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1904.  Gene #199: 'MYO1G MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
MYO1G MUTATED 1 1 1 0 0
MYO1G WILD-TYPE 38 31 42 30 32
'MYO1G MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0969 (Fisher's exact test), Q value = 0.73

Table S1905.  Gene #199: 'MYO1G MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MYO1G MUTATED 2 8 1
MYO1G WILD-TYPE 148 177 142
'MYO1G MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S1906.  Gene #199: 'MYO1G MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MYO1G MUTATED 0 5 3 0 1 0 2
MYO1G WILD-TYPE 72 104 87 44 48 46 66
'MYO1G MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.88

Table S1907.  Gene #199: 'MYO1G MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MYO1G MUTATED 2 6 4
MYO1G WILD-TYPE 173 205 86
'MYO1G MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S1908.  Gene #199: 'MYO1G MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MYO1G MUTATED 1 7 2 2
MYO1G WILD-TYPE 69 179 129 87
'MYO1G MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S1909.  Gene #199: 'MYO1G MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MYO1G MUTATED 2 4 4
MYO1G WILD-TYPE 139 178 85
'MYO1G MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S1910.  Gene #199: 'MYO1G MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MYO1G MUTATED 1 8 1
MYO1G WILD-TYPE 93 225 84
'PUM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.83

Table S1911.  Gene #200: 'PUM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PUM2 MUTATED 1 9 0 2
PUM2 WILD-TYPE 64 201 72 129
'PUM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S1912.  Gene #200: 'PUM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PUM2 MUTATED 5 2 5
PUM2 WILD-TYPE 126 136 156
'PUM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S1913.  Gene #200: 'PUM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
PUM2 MUTATED 0 3 3
PUM2 WILD-TYPE 42 68 60
'PUM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S1914.  Gene #200: 'PUM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
PUM2 MUTATED 2 1 1 1 1
PUM2 WILD-TYPE 37 31 42 29 31
'PUM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.82

Table S1915.  Gene #200: 'PUM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PUM2 MUTATED 2 8 2
PUM2 WILD-TYPE 148 177 141
'PUM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S1916.  Gene #200: 'PUM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PUM2 MUTATED 1 4 2 1 1 2 1
PUM2 WILD-TYPE 71 105 88 43 48 44 67
'PUM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S1917.  Gene #200: 'PUM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PUM2 MUTATED 5 4 3
PUM2 WILD-TYPE 170 207 87
'PUM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S1918.  Gene #200: 'PUM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PUM2 MUTATED 2 4 5 1
PUM2 WILD-TYPE 68 182 126 88
'PUM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S1919.  Gene #200: 'PUM2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PUM2 MUTATED 3 4 4
PUM2 WILD-TYPE 138 178 85
'PUM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1920.  Gene #200: 'PUM2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PUM2 MUTATED 2 7 2
PUM2 WILD-TYPE 92 226 83
'C11ORF63 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S1921.  Gene #201: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
C11ORF63 MUTATED 3 5 4 6
C11ORF63 WILD-TYPE 62 205 68 125
'C11ORF63 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.89

Table S1922.  Gene #201: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
C11ORF63 MUTATED 3 4 10
C11ORF63 WILD-TYPE 128 134 151
'C11ORF63 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S1923.  Gene #201: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
C11ORF63 MUTATED 0 1 2
C11ORF63 WILD-TYPE 42 70 61
'C11ORF63 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S1924.  Gene #201: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
C11ORF63 MUTATED 0 0 2 1 0
C11ORF63 WILD-TYPE 39 32 41 29 32
'C11ORF63 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.95

Table S1925.  Gene #201: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
C11ORF63 MUTATED 5 10 3
C11ORF63 WILD-TYPE 145 175 140
'C11ORF63 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.87

Table S1926.  Gene #201: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
C11ORF63 MUTATED 2 9 4 1 0 1 1
C11ORF63 WILD-TYPE 70 100 86 43 49 45 67
'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00893 (Fisher's exact test), Q value = 0.33

Table S1927.  Gene #201: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
C11ORF63 MUTATED 1 12 5
C11ORF63 WILD-TYPE 174 199 85

Figure S218.  Get High-res Image Gene #201: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0312 (Fisher's exact test), Q value = 0.54

Table S1928.  Gene #201: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
C11ORF63 MUTATED 0 10 2 6
C11ORF63 WILD-TYPE 70 176 129 83

Figure S219.  Get High-res Image Gene #201: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S1929.  Gene #201: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
C11ORF63 MUTATED 4 8 4
C11ORF63 WILD-TYPE 137 174 85
'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.79

Table S1930.  Gene #201: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
C11ORF63 MUTATED 2 13 1
C11ORF63 WILD-TYPE 92 220 84
'IPP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0861 (Fisher's exact test), Q value = 0.69

Table S1931.  Gene #202: 'IPP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
IPP MUTATED 0 1 3 1
IPP WILD-TYPE 65 209 69 130
'IPP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.73

Table S1932.  Gene #202: 'IPP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
IPP MUTATED 1 3 0
IPP WILD-TYPE 130 135 161
'IPP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S1933.  Gene #202: 'IPP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
IPP MUTATED 1 3 1
IPP WILD-TYPE 149 182 142
'IPP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S1934.  Gene #202: 'IPP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
IPP MUTATED 1 1 2 0 0 1 0
IPP WILD-TYPE 71 108 88 44 49 45 68
'IPP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.98

Table S1935.  Gene #202: 'IPP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
IPP MUTATED 1 4 0
IPP WILD-TYPE 174 207 90
'IPP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.83

Table S1936.  Gene #202: 'IPP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
IPP MUTATED 0 1 1 3
IPP WILD-TYPE 70 185 130 86
'IPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S1937.  Gene #202: 'IPP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
IPP MUTATED 2 2 0
IPP WILD-TYPE 139 180 89
'IPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S1938.  Gene #202: 'IPP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
IPP MUTATED 0 3 1
IPP WILD-TYPE 94 230 84
'XRCC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.96

Table S1939.  Gene #203: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
XRCC6 MUTATED 1 3 3 1
XRCC6 WILD-TYPE 64 207 69 130
'XRCC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S1940.  Gene #203: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
XRCC6 MUTATED 1 2 4
XRCC6 WILD-TYPE 130 136 157
'XRCC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1941.  Gene #203: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
XRCC6 MUTATED 1 1 1
XRCC6 WILD-TYPE 41 70 62
'XRCC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0712 (Fisher's exact test), Q value = 0.65

Table S1942.  Gene #203: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
XRCC6 MUTATED 0 1 0 2 0
XRCC6 WILD-TYPE 39 31 43 28 32
'XRCC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S1943.  Gene #203: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
XRCC6 MUTATED 1 4 3
XRCC6 WILD-TYPE 149 181 140
'XRCC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.73

Table S1944.  Gene #203: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
XRCC6 MUTATED 0 3 1 1 0 3 0
XRCC6 WILD-TYPE 72 106 89 43 49 43 68
'XRCC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S1945.  Gene #203: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
XRCC6 MUTATED 2 3 2
XRCC6 WILD-TYPE 173 208 88
'XRCC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S1946.  Gene #203: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
XRCC6 MUTATED 2 3 1 1
XRCC6 WILD-TYPE 68 183 130 88
'XRCC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.81

Table S1947.  Gene #203: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
XRCC6 MUTATED 2 1 3
XRCC6 WILD-TYPE 139 181 86
'XRCC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S1948.  Gene #203: 'XRCC6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
XRCC6 MUTATED 1 5 0
XRCC6 WILD-TYPE 93 228 85
'RHEB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.73

Table S1949.  Gene #204: 'RHEB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
RHEB MUTATED 1 1 2 0
RHEB WILD-TYPE 64 209 70 131
'RHEB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.96

Table S1950.  Gene #204: 'RHEB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
RHEB MUTATED 0 3 1
RHEB WILD-TYPE 150 182 142
'RHEB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S1951.  Gene #204: 'RHEB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
RHEB MUTATED 0 1 1 0 1 1 0
RHEB WILD-TYPE 72 108 89 44 48 45 68
'RHEB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S1952.  Gene #204: 'RHEB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
RHEB MUTATED 1 3 0
RHEB WILD-TYPE 174 208 90
'RHEB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S1953.  Gene #204: 'RHEB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
RHEB MUTATED 0 3 1 0
RHEB WILD-TYPE 70 183 130 89
'TSLP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S1954.  Gene #205: 'TSLP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
TSLP MUTATED 0 2 2 3
TSLP WILD-TYPE 65 208 70 128
'TSLP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S1955.  Gene #205: 'TSLP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
TSLP MUTATED 1 3 2
TSLP WILD-TYPE 130 135 159
'TSLP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S1956.  Gene #205: 'TSLP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
TSLP MUTATED 1 2 0
TSLP WILD-TYPE 41 69 63
'TSLP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1957.  Gene #205: 'TSLP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
TSLP MUTATED 1 1 1 0 0
TSLP WILD-TYPE 38 31 42 30 32
'TSLP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.93

Table S1958.  Gene #205: 'TSLP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
TSLP MUTATED 1 5 1
TSLP WILD-TYPE 149 180 142
'TSLP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S1959.  Gene #205: 'TSLP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
TSLP MUTATED 0 1 2 1 0 2 1
TSLP WILD-TYPE 72 108 88 43 49 44 67
'TSLP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.73

Table S1960.  Gene #205: 'TSLP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
TSLP MUTATED 1 6 0
TSLP WILD-TYPE 174 205 90
'TSLP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.83

Table S1961.  Gene #205: 'TSLP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
TSLP MUTATED 1 3 0 3
TSLP WILD-TYPE 69 183 131 86
'TSLP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S1962.  Gene #205: 'TSLP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
TSLP MUTATED 1 3 2
TSLP WILD-TYPE 140 179 87
'TSLP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S1963.  Gene #205: 'TSLP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
TSLP MUTATED 0 5 1
TSLP WILD-TYPE 94 228 84
'LIPG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S1964.  Gene #206: 'LIPG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
LIPG MUTATED 2 2 2 3
LIPG WILD-TYPE 63 208 70 128
'LIPG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S1965.  Gene #206: 'LIPG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
LIPG MUTATED 1 3 4
LIPG WILD-TYPE 130 135 157
'LIPG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1966.  Gene #206: 'LIPG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
LIPG MUTATED 1 1 1
LIPG WILD-TYPE 41 70 62
'LIPG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.83

Table S1967.  Gene #206: 'LIPG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
LIPG MUTATED 0 0 1 2 0
LIPG WILD-TYPE 39 32 42 28 32
'LIPG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S1968.  Gene #206: 'LIPG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
LIPG MUTATED 3 4 2
LIPG WILD-TYPE 147 181 141
'LIPG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S1969.  Gene #206: 'LIPG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
LIPG MUTATED 1 2 3 0 2 1 0
LIPG WILD-TYPE 71 107 87 44 47 45 68
'LIPG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.77

Table S1970.  Gene #206: 'LIPG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
LIPG MUTATED 1 7 1
LIPG WILD-TYPE 174 204 89
'LIPG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S1971.  Gene #206: 'LIPG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
LIPG MUTATED 0 6 2 1
LIPG WILD-TYPE 70 180 129 88
'LIPG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.88

Table S1972.  Gene #206: 'LIPG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
LIPG MUTATED 1 6 1
LIPG WILD-TYPE 140 176 88
'LIPG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.88

Table S1973.  Gene #206: 'LIPG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
LIPG MUTATED 0 7 1
LIPG WILD-TYPE 94 226 84
'SOS1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S1974.  Gene #207: 'SOS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
SOS1 MUTATED 1 1 0 1
SOS1 WILD-TYPE 4 6 5 2
'SOS1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S1975.  Gene #207: 'SOS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
SOS1 MUTATED 0 2 1
SOS1 WILD-TYPE 7 7 3
'SOS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S1976.  Gene #207: 'SOS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SOS1 MUTATED 2 9 1 2
SOS1 WILD-TYPE 63 201 71 129
'SOS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S1977.  Gene #207: 'SOS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SOS1 MUTATED 4 3 6
SOS1 WILD-TYPE 127 135 155
'SOS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.89

Table S1978.  Gene #207: 'SOS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SOS1 MUTATED 0 5 3
SOS1 WILD-TYPE 42 66 60
'SOS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 1

Table S1979.  Gene #207: 'SOS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SOS1 MUTATED 1 3 3 1 0
SOS1 WILD-TYPE 38 29 40 29 32
'SOS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0889 (Fisher's exact test), Q value = 0.71

Table S1980.  Gene #207: 'SOS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SOS1 MUTATED 1 8 5
SOS1 WILD-TYPE 149 177 138
'SOS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.94

Table S1981.  Gene #207: 'SOS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SOS1 MUTATED 0 5 2 3 1 2 1
SOS1 WILD-TYPE 72 104 88 41 48 44 67
'SOS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S1982.  Gene #207: 'SOS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SOS1 MUTATED 5 8 1
SOS1 WILD-TYPE 170 203 89
'SOS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S1983.  Gene #207: 'SOS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SOS1 MUTATED 1 5 4 4
SOS1 WILD-TYPE 69 181 127 85
'SOS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S1984.  Gene #207: 'SOS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SOS1 MUTATED 4 6 1
SOS1 WILD-TYPE 137 176 88
'SOS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S1985.  Gene #207: 'SOS1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SOS1 MUTATED 3 7 1
SOS1 WILD-TYPE 91 226 84
'KCTD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S1986.  Gene #208: 'KCTD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
KCTD1 MUTATED 1 4 0 1
KCTD1 WILD-TYPE 64 206 72 130
'KCTD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S1987.  Gene #208: 'KCTD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
KCTD1 MUTATED 2 2 1
KCTD1 WILD-TYPE 129 136 160
'KCTD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S1988.  Gene #208: 'KCTD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
KCTD1 MUTATED 2 3 1
KCTD1 WILD-TYPE 148 182 142
'KCTD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S1989.  Gene #208: 'KCTD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
KCTD1 MUTATED 0 1 1 0 1 1 2
KCTD1 WILD-TYPE 72 108 89 44 48 45 66
'KCTD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S1990.  Gene #208: 'KCTD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
KCTD1 MUTATED 3 3 0
KCTD1 WILD-TYPE 172 208 90
'KCTD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1991.  Gene #208: 'KCTD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
KCTD1 MUTATED 1 2 2 1
KCTD1 WILD-TYPE 69 184 129 88
'KCTD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S1992.  Gene #208: 'KCTD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
KCTD1 MUTATED 1 3 1
KCTD1 WILD-TYPE 140 179 88
'KCTD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1993.  Gene #208: 'KCTD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
KCTD1 MUTATED 1 3 1
KCTD1 WILD-TYPE 93 230 84
'IRF2BP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S1994.  Gene #209: 'IRF2BP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
IRF2BP2 MUTATED 1 2 2 2
IRF2BP2 WILD-TYPE 64 208 70 129
'IRF2BP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.78

Table S1995.  Gene #209: 'IRF2BP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
IRF2BP2 MUTATED 1 5 1
IRF2BP2 WILD-TYPE 130 133 160
'IRF2BP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S1996.  Gene #209: 'IRF2BP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
IRF2BP2 MUTATED 2 2 3
IRF2BP2 WILD-TYPE 148 183 140
'IRF2BP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.97 (Fisher's exact test), Q value = 1

Table S1997.  Gene #209: 'IRF2BP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
IRF2BP2 MUTATED 1 1 2 0 1 1 1
IRF2BP2 WILD-TYPE 71 108 88 44 48 45 67
'IRF2BP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S1998.  Gene #209: 'IRF2BP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
IRF2BP2 MUTATED 1 4 2
IRF2BP2 WILD-TYPE 174 207 88
'IRF2BP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S1999.  Gene #209: 'IRF2BP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
IRF2BP2 MUTATED 0 3 2 2
IRF2BP2 WILD-TYPE 70 183 129 87
'IRF2BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2000.  Gene #209: 'IRF2BP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
IRF2BP2 MUTATED 3 3 1
IRF2BP2 WILD-TYPE 138 179 88
'IRF2BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S2001.  Gene #209: 'IRF2BP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
IRF2BP2 MUTATED 0 5 2
IRF2BP2 WILD-TYPE 94 228 83
'SUN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.93

Table S2002.  Gene #210: 'SUN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SUN1 MUTATED 1 5 5 4
SUN1 WILD-TYPE 64 205 67 127
'SUN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2003.  Gene #210: 'SUN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SUN1 MUTATED 3 4 4
SUN1 WILD-TYPE 128 134 157
'SUN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S2004.  Gene #210: 'SUN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SUN1 MUTATED 1 1 2
SUN1 WILD-TYPE 41 70 61
'SUN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.85

Table S2005.  Gene #210: 'SUN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SUN1 MUTATED 0 0 2 0 2
SUN1 WILD-TYPE 39 32 41 30 30
'SUN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.73

Table S2006.  Gene #210: 'SUN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SUN1 MUTATED 2 10 3
SUN1 WILD-TYPE 148 175 140
'SUN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.79

Table S2007.  Gene #210: 'SUN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SUN1 MUTATED 1 5 4 0 0 4 1
SUN1 WILD-TYPE 71 104 86 44 49 42 67
'SUN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.41

Table S2008.  Gene #210: 'SUN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SUN1 MUTATED 1 11 2
SUN1 WILD-TYPE 174 200 88

Figure S220.  Get High-res Image Gene #210: 'SUN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SUN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0202 (Fisher's exact test), Q value = 0.45

Table S2009.  Gene #210: 'SUN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SUN1 MUTATED 1 10 0 3
SUN1 WILD-TYPE 69 176 131 86

Figure S221.  Get High-res Image Gene #210: 'SUN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SUN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S2010.  Gene #210: 'SUN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SUN1 MUTATED 2 6 3
SUN1 WILD-TYPE 139 176 86
'SUN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.77

Table S2011.  Gene #210: 'SUN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SUN1 MUTATED 0 9 2
SUN1 WILD-TYPE 94 224 83
'SEMA6C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.87

Table S2012.  Gene #211: 'SEMA6C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SEMA6C MUTATED 1 1 1 4
SEMA6C WILD-TYPE 64 209 71 127
'SEMA6C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S2013.  Gene #211: 'SEMA6C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SEMA6C MUTATED 1 2 3
SEMA6C WILD-TYPE 130 136 158
'SEMA6C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2014.  Gene #211: 'SEMA6C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SEMA6C MUTATED 1 2 1
SEMA6C WILD-TYPE 41 69 62
'SEMA6C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S2015.  Gene #211: 'SEMA6C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SEMA6C MUTATED 1 1 1 1 0
SEMA6C WILD-TYPE 38 31 42 29 32
'SEMA6C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 0.54

Table S2016.  Gene #211: 'SEMA6C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SEMA6C MUTATED 1 6 0
SEMA6C WILD-TYPE 149 179 143

Figure S222.  Get High-res Image Gene #211: 'SEMA6C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SEMA6C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S2017.  Gene #211: 'SEMA6C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SEMA6C MUTATED 0 3 2 1 0 1 0
SEMA6C WILD-TYPE 72 106 88 43 49 45 68
'SEMA6C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S2018.  Gene #211: 'SEMA6C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SEMA6C MUTATED 1 4 2
SEMA6C WILD-TYPE 174 207 88
'SEMA6C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S2019.  Gene #211: 'SEMA6C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SEMA6C MUTATED 0 3 1 3
SEMA6C WILD-TYPE 70 183 130 86
'SEMA6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S2020.  Gene #211: 'SEMA6C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SEMA6C MUTATED 1 3 1
SEMA6C WILD-TYPE 140 179 88
'SEMA6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.88

Table S2021.  Gene #211: 'SEMA6C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SEMA6C MUTATED 0 5 0
SEMA6C WILD-TYPE 94 228 85
'KLF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2022.  Gene #212: 'KLF5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
KLF5 MUTATED 0 2 1 1
KLF5 WILD-TYPE 65 208 71 130
'KLF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S2023.  Gene #212: 'KLF5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
KLF5 MUTATED 0 1 3
KLF5 WILD-TYPE 131 137 158
'KLF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.73

Table S2024.  Gene #212: 'KLF5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
KLF5 MUTATED 2 0 1
KLF5 WILD-TYPE 40 71 62
'KLF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.73

Table S2025.  Gene #212: 'KLF5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
KLF5 MUTATED 0 0 0 1 2
KLF5 WILD-TYPE 39 32 43 29 30
'KLF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2026.  Gene #212: 'KLF5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
KLF5 MUTATED 1 2 1
KLF5 WILD-TYPE 149 183 142
'KLF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S2027.  Gene #212: 'KLF5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
KLF5 MUTATED 2 1 1 0 0 0 0
KLF5 WILD-TYPE 70 108 89 44 49 46 68
'KLF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S2028.  Gene #212: 'KLF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
KLF5 MUTATED 2 2 0
KLF5 WILD-TYPE 173 209 90
'KLF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S2029.  Gene #212: 'KLF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
KLF5 MUTATED 1 2 0 1
KLF5 WILD-TYPE 69 184 131 88
'KLF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.73

Table S2030.  Gene #212: 'KLF5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
KLF5 MUTATED 3 0 1
KLF5 WILD-TYPE 138 182 88
'KLF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.78

Table S2031.  Gene #212: 'KLF5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
KLF5 MUTATED 1 1 2
KLF5 WILD-TYPE 93 232 83
'RFTN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S2032.  Gene #213: 'RFTN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
RFTN2 MUTATED 2 3 3 3
RFTN2 WILD-TYPE 63 207 69 128
'RFTN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S2033.  Gene #213: 'RFTN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
RFTN2 MUTATED 2 5 3
RFTN2 WILD-TYPE 129 133 158
'RFTN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.9

Table S2034.  Gene #213: 'RFTN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
RFTN2 MUTATED 2 1 0
RFTN2 WILD-TYPE 40 70 63
'RFTN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.88

Table S2035.  Gene #213: 'RFTN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
RFTN2 MUTATED 1 0 0 0 2
RFTN2 WILD-TYPE 38 32 43 30 30
'RFTN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S2036.  Gene #213: 'RFTN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
RFTN2 MUTATED 2 4 5
RFTN2 WILD-TYPE 148 181 138
'RFTN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.82

Table S2037.  Gene #213: 'RFTN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
RFTN2 MUTATED 1 3 4 0 0 3 0
RFTN2 WILD-TYPE 71 106 86 44 49 43 68
'RFTN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.83

Table S2038.  Gene #213: 'RFTN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
RFTN2 MUTATED 2 8 1
RFTN2 WILD-TYPE 173 203 89
'RFTN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0374 (Fisher's exact test), Q value = 0.57

Table S2039.  Gene #213: 'RFTN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
RFTN2 MUTATED 1 3 1 6
RFTN2 WILD-TYPE 69 183 130 83

Figure S223.  Get High-res Image Gene #213: 'RFTN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RFTN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S2040.  Gene #213: 'RFTN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
RFTN2 MUTATED 2 5 3
RFTN2 WILD-TYPE 139 177 86
'RFTN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0795 (Fisher's exact test), Q value = 0.68

Table S2041.  Gene #213: 'RFTN2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
RFTN2 MUTATED 0 9 1
RFTN2 WILD-TYPE 94 224 84
'ZNF81 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.94

Table S2042.  Gene #214: 'ZNF81 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ZNF81 MUTATED 1 2 3 2
ZNF81 WILD-TYPE 64 208 69 129
'ZNF81 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S2043.  Gene #214: 'ZNF81 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ZNF81 MUTATED 1 3 3
ZNF81 WILD-TYPE 130 135 158
'ZNF81 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2044.  Gene #214: 'ZNF81 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ZNF81 MUTATED 1 1 1
ZNF81 WILD-TYPE 41 70 62
'ZNF81 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S2045.  Gene #214: 'ZNF81 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ZNF81 MUTATED 1 1 0 1 0
ZNF81 WILD-TYPE 38 31 43 29 32
'ZNF81 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S2046.  Gene #214: 'ZNF81 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ZNF81 MUTATED 2 5 1
ZNF81 WILD-TYPE 148 180 142
'ZNF81 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S2047.  Gene #214: 'ZNF81 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ZNF81 MUTATED 0 1 3 1 1 0 2
ZNF81 WILD-TYPE 72 108 87 43 48 46 66
'ZNF81 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.88

Table S2048.  Gene #214: 'ZNF81 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ZNF81 MUTATED 1 6 1
ZNF81 WILD-TYPE 174 205 89
'ZNF81 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.83

Table S2049.  Gene #214: 'ZNF81 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ZNF81 MUTATED 1 4 0 3
ZNF81 WILD-TYPE 69 182 131 86
'ZNF81 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2050.  Gene #214: 'ZNF81 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ZNF81 MUTATED 3 3 1
ZNF81 WILD-TYPE 138 179 88
'ZNF81 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S2051.  Gene #214: 'ZNF81 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ZNF81 MUTATED 1 5 1
ZNF81 WILD-TYPE 93 228 84
'FER MUTATION STATUS' versus 'CN_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S2052.  Gene #215: 'FER MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
FER MUTATED 1 5 1 6
FER WILD-TYPE 64 205 71 125
'FER MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00068 (Fisher's exact test), Q value = 0.075

Table S2053.  Gene #215: 'FER MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
FER MUTATED 0 2 11
FER WILD-TYPE 131 136 150

Figure S224.  Get High-res Image Gene #215: 'FER MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FER MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.83

Table S2054.  Gene #215: 'FER MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
FER MUTATED 0 1 4
FER WILD-TYPE 42 70 59
'FER MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00291 (Fisher's exact test), Q value = 0.19

Table S2055.  Gene #215: 'FER MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
FER MUTATED 0 0 5 0 0
FER WILD-TYPE 39 32 38 30 32

Figure S225.  Get High-res Image Gene #215: 'FER MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'FER MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.93

Table S2056.  Gene #215: 'FER MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
FER MUTATED 2 8 3
FER WILD-TYPE 148 177 140
'FER MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.73

Table S2057.  Gene #215: 'FER MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
FER MUTATED 0 5 5 0 0 0 3
FER WILD-TYPE 72 104 85 44 49 46 65
'FER MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.97

Table S2058.  Gene #215: 'FER MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
FER MUTATED 3 6 4
FER WILD-TYPE 172 205 86
'FER MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S2059.  Gene #215: 'FER MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
FER MUTATED 1 4 3 5
FER WILD-TYPE 69 182 128 84
'FER MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.34

Table S2060.  Gene #215: 'FER MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
FER MUTATED 0 6 5
FER WILD-TYPE 141 176 84

Figure S226.  Get High-res Image Gene #215: 'FER MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FER MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S2061.  Gene #215: 'FER MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
FER MUTATED 2 8 1
FER WILD-TYPE 92 225 84
'NPHS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0688 (Fisher's exact test), Q value = 0.65

Table S2062.  Gene #216: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
NPHS1 MUTATED 5 5 6 8
NPHS1 WILD-TYPE 60 205 66 123
'NPHS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.83

Table S2063.  Gene #216: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
NPHS1 MUTATED 3 8 11
NPHS1 WILD-TYPE 128 130 150
'NPHS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0501 (Fisher's exact test), Q value = 0.62

Table S2064.  Gene #216: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
NPHS1 MUTATED 2 1 7
NPHS1 WILD-TYPE 40 70 56
'NPHS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.89

Table S2065.  Gene #216: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
NPHS1 MUTATED 0 1 3 3 3
NPHS1 WILD-TYPE 39 31 40 27 29
'NPHS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.94

Table S2066.  Gene #216: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
NPHS1 MUTATED 5 13 6
NPHS1 WILD-TYPE 145 172 137
'NPHS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S2067.  Gene #216: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
NPHS1 MUTATED 3 8 5 1 4 1 2
NPHS1 WILD-TYPE 69 101 85 43 45 45 66
'NPHS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S2068.  Gene #216: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
NPHS1 MUTATED 7 13 3
NPHS1 WILD-TYPE 168 198 87
'NPHS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.83

Table S2069.  Gene #216: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
NPHS1 MUTATED 1 9 5 8
NPHS1 WILD-TYPE 69 177 126 81
'NPHS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2070.  Gene #216: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
NPHS1 MUTATED 7 10 4
NPHS1 WILD-TYPE 134 172 85
'NPHS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.94

Table S2071.  Gene #216: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
NPHS1 MUTATED 2 15 4
NPHS1 WILD-TYPE 92 218 81
'KDR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S2072.  Gene #217: 'KDR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
KDR MUTATED 5 16 6 15
KDR WILD-TYPE 60 194 66 116
'KDR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S2073.  Gene #217: 'KDR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
KDR MUTATED 8 14 15
KDR WILD-TYPE 123 124 146
'KDR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S2074.  Gene #217: 'KDR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
KDR MUTATED 3 6 2
KDR WILD-TYPE 39 65 61
'KDR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S2075.  Gene #217: 'KDR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
KDR MUTATED 2 2 4 2 1
KDR WILD-TYPE 37 30 39 28 31
'KDR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.73

Table S2076.  Gene #217: 'KDR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
KDR MUTATED 9 23 11
KDR WILD-TYPE 141 162 132
'KDR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S2077.  Gene #217: 'KDR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
KDR MUTATED 4 12 11 3 4 5 4
KDR WILD-TYPE 68 97 79 41 45 41 64
'KDR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.95

Table S2078.  Gene #217: 'KDR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
KDR MUTATED 12 23 6
KDR WILD-TYPE 163 188 84
'KDR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00113 (Fisher's exact test), Q value = 0.11

Table S2079.  Gene #217: 'KDR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
KDR MUTATED 9 18 2 12
KDR WILD-TYPE 61 168 129 77

Figure S227.  Get High-res Image Gene #217: 'KDR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KDR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.04 (Fisher's exact test), Q value = 0.58

Table S2080.  Gene #217: 'KDR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
KDR MUTATED 6 17 12
KDR WILD-TYPE 135 165 77

Figure S228.  Get High-res Image Gene #217: 'KDR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'KDR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0413 (Fisher's exact test), Q value = 0.58

Table S2081.  Gene #217: 'KDR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
KDR MUTATED 4 27 4
KDR WILD-TYPE 90 206 81

Figure S229.  Get High-res Image Gene #217: 'KDR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'LDB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.41

Table S2082.  Gene #218: 'LDB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
LDB2 MUTATED 5 3 2 9
LDB2 WILD-TYPE 60 207 70 122

Figure S230.  Get High-res Image Gene #218: 'LDB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LDB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.73

Table S2083.  Gene #218: 'LDB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
LDB2 MUTATED 2 9 6
LDB2 WILD-TYPE 129 129 155
'LDB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.83

Table S2084.  Gene #218: 'LDB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
LDB2 MUTATED 0 3 0
LDB2 WILD-TYPE 42 68 63
'LDB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S2085.  Gene #218: 'LDB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
LDB2 MUTATED 0 1 2 0 0
LDB2 WILD-TYPE 39 31 41 30 32
'LDB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S2086.  Gene #218: 'LDB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
LDB2 MUTATED 4 9 6
LDB2 WILD-TYPE 146 176 137
'LDB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S2087.  Gene #218: 'LDB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
LDB2 MUTATED 3 7 3 2 3 0 1
LDB2 WILD-TYPE 69 102 87 42 46 46 67
'LDB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0323 (Fisher's exact test), Q value = 0.54

Table S2088.  Gene #218: 'LDB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
LDB2 MUTATED 2 12 5
LDB2 WILD-TYPE 173 199 85

Figure S231.  Get High-res Image Gene #218: 'LDB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LDB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00198 (Fisher's exact test), Q value = 0.15

Table S2089.  Gene #218: 'LDB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
LDB2 MUTATED 1 11 0 7
LDB2 WILD-TYPE 69 175 131 82

Figure S232.  Get High-res Image Gene #218: 'LDB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LDB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.84

Table S2090.  Gene #218: 'LDB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
LDB2 MUTATED 3 8 6
LDB2 WILD-TYPE 138 174 83
'LDB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S2091.  Gene #218: 'LDB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
LDB2 MUTATED 2 12 3
LDB2 WILD-TYPE 92 221 82
'FIBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.53

Table S2092.  Gene #219: 'FIBP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
FIBP MUTATED 1 0 0 4
FIBP WILD-TYPE 64 210 72 127

Figure S233.  Get High-res Image Gene #219: 'FIBP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FIBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.84

Table S2093.  Gene #219: 'FIBP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
FIBP MUTATED 0 1 4
FIBP WILD-TYPE 131 137 157
'FIBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.37

Table S2094.  Gene #219: 'FIBP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
FIBP MUTATED 3 0 0
FIBP WILD-TYPE 39 71 63

Figure S234.  Get High-res Image Gene #219: 'FIBP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'FIBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.4

Table S2095.  Gene #219: 'FIBP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
FIBP MUTATED 0 0 0 0 3
FIBP WILD-TYPE 39 32 43 30 29

Figure S235.  Get High-res Image Gene #219: 'FIBP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'FIBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.97

Table S2096.  Gene #219: 'FIBP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
FIBP MUTATED 0 3 2
FIBP WILD-TYPE 150 182 141
'FIBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S2097.  Gene #219: 'FIBP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
FIBP MUTATED 1 3 0 1 0 0 0
FIBP WILD-TYPE 71 106 90 43 49 46 68
'FIBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S2098.  Gene #219: 'FIBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
FIBP MUTATED 2 3 0
FIBP WILD-TYPE 173 208 90
'FIBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S2099.  Gene #219: 'FIBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
FIBP MUTATED 0 2 2 1
FIBP WILD-TYPE 70 184 129 88
'FIBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S2100.  Gene #219: 'FIBP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
FIBP MUTATED 2 2 0
FIBP WILD-TYPE 139 180 89
'FIBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S2101.  Gene #219: 'FIBP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
FIBP MUTATED 1 3 0
FIBP WILD-TYPE 93 230 85
'MSH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S2102.  Gene #220: 'MSH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MSH2 MUTATED 1 4 3 3
MSH2 WILD-TYPE 64 206 69 128
'MSH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2103.  Gene #220: 'MSH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MSH2 MUTATED 3 3 4
MSH2 WILD-TYPE 128 135 157
'MSH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.96

Table S2104.  Gene #220: 'MSH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MSH2 MUTATED 2 7 2
MSH2 WILD-TYPE 148 178 141
'MSH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S2105.  Gene #220: 'MSH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MSH2 MUTATED 1 4 4 0 1 1 0
MSH2 WILD-TYPE 71 105 86 44 48 45 68
'MSH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S2106.  Gene #220: 'MSH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MSH2 MUTATED 2 6 2
MSH2 WILD-TYPE 173 205 88
'MSH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S2107.  Gene #220: 'MSH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MSH2 MUTATED 1 3 2 4
MSH2 WILD-TYPE 69 183 129 85
'MSH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S2108.  Gene #220: 'MSH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MSH2 MUTATED 2 6 2
MSH2 WILD-TYPE 139 176 87
'MSH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2109.  Gene #220: 'MSH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MSH2 MUTATED 2 6 2
MSH2 WILD-TYPE 92 227 83
'PARD3B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S2110.  Gene #221: 'PARD3B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PARD3B MUTATED 4 10 5 8
PARD3B WILD-TYPE 61 200 67 123
'PARD3B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.98

Table S2111.  Gene #221: 'PARD3B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PARD3B MUTATED 4 8 11
PARD3B WILD-TYPE 127 130 150
'PARD3B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S2112.  Gene #221: 'PARD3B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
PARD3B MUTATED 3 4 4
PARD3B WILD-TYPE 39 67 59
'PARD3B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S2113.  Gene #221: 'PARD3B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
PARD3B MUTATED 1 3 3 1 3
PARD3B WILD-TYPE 38 29 40 29 29
'PARD3B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.95

Table S2114.  Gene #221: 'PARD3B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PARD3B MUTATED 5 13 9
PARD3B WILD-TYPE 145 172 134
'PARD3B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.96

Table S2115.  Gene #221: 'PARD3B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PARD3B MUTATED 3 6 2 3 3 6 4
PARD3B WILD-TYPE 69 103 88 41 46 40 64
'PARD3B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S2116.  Gene #221: 'PARD3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PARD3B MUTATED 7 12 6
PARD3B WILD-TYPE 168 199 84
'PARD3B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S2117.  Gene #221: 'PARD3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PARD3B MUTATED 3 11 6 5
PARD3B WILD-TYPE 67 175 125 84
'PARD3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.958 (Fisher's exact test), Q value = 1

Table S2118.  Gene #221: 'PARD3B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PARD3B MUTATED 7 9 5
PARD3B WILD-TYPE 134 173 84
'PARD3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.37

Table S2119.  Gene #221: 'PARD3B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PARD3B MUTATED 0 16 5
PARD3B WILD-TYPE 94 217 80

Figure S236.  Get High-res Image Gene #221: 'PARD3B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'LARS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00463 (Fisher's exact test), Q value = 0.24

Table S2120.  Gene #222: 'LARS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
LARS MUTATED 2 0 4 2
LARS WILD-TYPE 63 210 68 129

Figure S237.  Get High-res Image Gene #222: 'LARS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LARS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.002 (Fisher's exact test), Q value = 0.15

Table S2121.  Gene #222: 'LARS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
LARS MUTATED 0 6 0
LARS WILD-TYPE 131 132 161

Figure S238.  Get High-res Image Gene #222: 'LARS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'LARS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.42

Table S2122.  Gene #222: 'LARS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
LARS MUTATED 0 0 4
LARS WILD-TYPE 42 71 59

Figure S239.  Get High-res Image Gene #222: 'LARS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'LARS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S2123.  Gene #222: 'LARS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
LARS MUTATED 0 2 1 1 0
LARS WILD-TYPE 39 30 42 29 32
'LARS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0518 (Fisher's exact test), Q value = 0.62

Table S2124.  Gene #222: 'LARS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
LARS MUTATED 0 3 5
LARS WILD-TYPE 150 182 138
'LARS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0109 (Fisher's exact test), Q value = 0.35

Table S2125.  Gene #222: 'LARS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
LARS MUTATED 0 0 5 0 2 1 0
LARS WILD-TYPE 72 109 85 44 47 45 68

Figure S240.  Get High-res Image Gene #222: 'LARS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LARS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0056 (Fisher's exact test), Q value = 0.26

Table S2126.  Gene #222: 'LARS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
LARS MUTATED 0 8 0
LARS WILD-TYPE 175 203 90

Figure S241.  Get High-res Image Gene #222: 'LARS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LARS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0111 (Fisher's exact test), Q value = 0.35

Table S2127.  Gene #222: 'LARS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
LARS MUTATED 0 3 0 5
LARS WILD-TYPE 70 183 131 84

Figure S242.  Get High-res Image Gene #222: 'LARS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'LARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S2128.  Gene #222: 'LARS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
LARS MUTATED 2 4 0
LARS WILD-TYPE 139 178 89
'LARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.78

Table S2129.  Gene #222: 'LARS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
LARS MUTATED 0 6 0
LARS WILD-TYPE 94 227 85
'LCE2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.37

Table S2130.  Gene #223: 'LCE2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
LCE2B MUTATED 1 0 3 4
LCE2B WILD-TYPE 64 210 69 127

Figure S243.  Get High-res Image Gene #223: 'LCE2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LCE2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.83

Table S2131.  Gene #223: 'LCE2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
LCE2B MUTATED 0 4 3
LCE2B WILD-TYPE 131 134 158
'LCE2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.73

Table S2132.  Gene #223: 'LCE2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
LCE2B MUTATED 0 5 3
LCE2B WILD-TYPE 150 180 140
'LCE2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 0.97

Table S2133.  Gene #223: 'LCE2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
LCE2B MUTATED 0 2 4 0 1 1 0
LCE2B WILD-TYPE 72 107 86 44 48 45 68
'LCE2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.88

Table S2134.  Gene #223: 'LCE2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
LCE2B MUTATED 1 6 1
LCE2B WILD-TYPE 174 205 89
'LCE2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.83

Table S2135.  Gene #223: 'LCE2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
LCE2B MUTATED 1 4 0 3
LCE2B WILD-TYPE 69 182 131 86
'LCE2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.97

Table S2136.  Gene #223: 'LCE2B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
LCE2B MUTATED 1 3 3
LCE2B WILD-TYPE 140 179 86
'LCE2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S2137.  Gene #223: 'LCE2B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
LCE2B MUTATED 0 5 2
LCE2B WILD-TYPE 94 228 83
'NTHL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0621 (Fisher's exact test), Q value = 0.63

Table S2138.  Gene #224: 'NTHL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
NTHL1 MUTATED 1 2 3 0
NTHL1 WILD-TYPE 64 208 69 131
'NTHL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S2139.  Gene #224: 'NTHL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
NTHL1 MUTATED 2 3 1
NTHL1 WILD-TYPE 129 135 160
'NTHL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S2140.  Gene #224: 'NTHL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
NTHL1 MUTATED 1 2 3
NTHL1 WILD-TYPE 149 183 140
'NTHL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S2141.  Gene #224: 'NTHL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
NTHL1 MUTATED 1 1 1 0 0 2 1
NTHL1 WILD-TYPE 71 108 89 44 49 44 67
'NTHL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S2142.  Gene #224: 'NTHL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
NTHL1 MUTATED 1 4 1
NTHL1 WILD-TYPE 174 207 89
'NTHL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.95

Table S2143.  Gene #224: 'NTHL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
NTHL1 MUTATED 0 2 1 3
NTHL1 WILD-TYPE 70 184 130 86
'NTHL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.5

Table S2144.  Gene #224: 'NTHL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
NTHL1 MUTATED 0 6 0
NTHL1 WILD-TYPE 141 176 89

Figure S244.  Get High-res Image Gene #224: 'NTHL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'NTHL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S2145.  Gene #224: 'NTHL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
NTHL1 MUTATED 1 5 0
NTHL1 WILD-TYPE 93 228 85
'UBAP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.95

Table S2146.  Gene #225: 'UBAP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
UBAP2 MUTATED 2 4 0 5
UBAP2 WILD-TYPE 63 206 72 126
'UBAP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S2147.  Gene #225: 'UBAP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
UBAP2 MUTATED 1 3 5
UBAP2 WILD-TYPE 130 135 156
'UBAP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2148.  Gene #225: 'UBAP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
UBAP2 MUTATED 1 2 2
UBAP2 WILD-TYPE 41 69 61
'UBAP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S2149.  Gene #225: 'UBAP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
UBAP2 MUTATED 0 1 2 1 1
UBAP2 WILD-TYPE 39 31 41 29 31
'UBAP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S2150.  Gene #225: 'UBAP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
UBAP2 MUTATED 3 5 3
UBAP2 WILD-TYPE 147 180 140
'UBAP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.985 (Fisher's exact test), Q value = 1

Table S2151.  Gene #225: 'UBAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
UBAP2 MUTATED 1 4 2 1 1 1 1
UBAP2 WILD-TYPE 71 105 88 43 48 45 67
'UBAP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S2152.  Gene #225: 'UBAP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
UBAP2 MUTATED 3 7 1
UBAP2 WILD-TYPE 172 204 89
'UBAP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.8

Table S2153.  Gene #225: 'UBAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
UBAP2 MUTATED 3 3 1 4
UBAP2 WILD-TYPE 67 183 130 85
'UBAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S2154.  Gene #225: 'UBAP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
UBAP2 MUTATED 3 3 2
UBAP2 WILD-TYPE 138 179 87
'UBAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S2155.  Gene #225: 'UBAP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
UBAP2 MUTATED 2 6 0
UBAP2 WILD-TYPE 92 227 85
'MATR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S2156.  Gene #226: 'MATR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MATR3 MUTATED 0 2 1 4
MATR3 WILD-TYPE 65 208 71 127
'MATR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.95

Table S2157.  Gene #226: 'MATR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MATR3 MUTATED 0 3 3
MATR3 WILD-TYPE 131 135 158
'MATR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.73

Table S2158.  Gene #226: 'MATR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MATR3 MUTATED 0 3 4
MATR3 WILD-TYPE 150 182 139
'MATR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.97

Table S2159.  Gene #226: 'MATR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MATR3 MUTATED 0 4 2 1 0 0 0
MATR3 WILD-TYPE 72 105 88 43 49 46 68
'MATR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S2160.  Gene #226: 'MATR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MATR3 MUTATED 4 3 0
MATR3 WILD-TYPE 171 208 90
'MATR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S2161.  Gene #226: 'MATR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MATR3 MUTATED 1 2 1 3
MATR3 WILD-TYPE 69 184 130 86
'MATR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.84

Table S2162.  Gene #226: 'MATR3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MATR3 MUTATED 1 5 0
MATR3 WILD-TYPE 140 177 89
'MATR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S2163.  Gene #226: 'MATR3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MATR3 MUTATED 0 5 1
MATR3 WILD-TYPE 94 228 84
'CD34 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S2164.  Gene #227: 'CD34 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CD34 MUTATED 1 4 2 3
CD34 WILD-TYPE 64 206 70 128
'CD34 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.93

Table S2165.  Gene #227: 'CD34 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CD34 MUTATED 1 5 3
CD34 WILD-TYPE 130 133 158
'CD34 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.82

Table S2166.  Gene #227: 'CD34 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CD34 MUTATED 2 7 1
CD34 WILD-TYPE 148 178 142
'CD34 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S2167.  Gene #227: 'CD34 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CD34 MUTATED 0 2 2 1 1 3 1
CD34 WILD-TYPE 72 107 88 43 48 43 67
'CD34 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.8

Table S2168.  Gene #227: 'CD34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CD34 MUTATED 1 6 3
CD34 WILD-TYPE 174 205 87
'CD34 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0458 (Fisher's exact test), Q value = 0.61

Table S2169.  Gene #227: 'CD34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CD34 MUTATED 1 8 0 1
CD34 WILD-TYPE 69 178 131 88

Figure S245.  Get High-res Image Gene #227: 'CD34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CD34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S2170.  Gene #227: 'CD34 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CD34 MUTATED 2 5 2
CD34 WILD-TYPE 139 177 87
'CD34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.73

Table S2171.  Gene #227: 'CD34 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CD34 MUTATED 0 8 1
CD34 WILD-TYPE 94 225 84
'BRD9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S2172.  Gene #228: 'BRD9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
BRD9 MUTATED 0 2 0 3
BRD9 WILD-TYPE 65 208 72 128
'BRD9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S2173.  Gene #228: 'BRD9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
BRD9 MUTATED 2 2 1
BRD9 WILD-TYPE 129 136 160
'BRD9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.88

Table S2174.  Gene #228: 'BRD9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
BRD9 MUTATED 0 2 3
BRD9 WILD-TYPE 150 183 140
'BRD9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S2175.  Gene #228: 'BRD9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
BRD9 MUTATED 0 2 1 1 0 1 0
BRD9 WILD-TYPE 72 107 89 43 49 45 68
'BRD9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S2176.  Gene #228: 'BRD9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
BRD9 MUTATED 2 3 0
BRD9 WILD-TYPE 173 208 90
'BRD9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.95

Table S2177.  Gene #228: 'BRD9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
BRD9 MUTATED 1 2 0 2
BRD9 WILD-TYPE 69 184 131 87
'BRD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S2178.  Gene #228: 'BRD9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
BRD9 MUTATED 2 3 0
BRD9 WILD-TYPE 139 179 89
'BRD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S2179.  Gene #228: 'BRD9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
BRD9 MUTATED 1 4 0
BRD9 WILD-TYPE 93 229 85
'BTAF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0587 (Fisher's exact test), Q value = 0.62

Table S2180.  Gene #229: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
BTAF1 MUTATED 3 5 7 8
BTAF1 WILD-TYPE 62 205 65 123
'BTAF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00326 (Fisher's exact test), Q value = 0.2

Table S2181.  Gene #229: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
BTAF1 MUTATED 0 10 8
BTAF1 WILD-TYPE 131 128 153

Figure S246.  Get High-res Image Gene #229: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'BTAF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2182.  Gene #229: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
BTAF1 MUTATED 2 3 3
BTAF1 WILD-TYPE 40 68 60
'BTAF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S2183.  Gene #229: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
BTAF1 MUTATED 1 3 1 1 2
BTAF1 WILD-TYPE 38 29 42 29 30
'BTAF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0713 (Fisher's exact test), Q value = 0.65

Table S2184.  Gene #229: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
BTAF1 MUTATED 3 9 11
BTAF1 WILD-TYPE 147 176 132
'BTAF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0357 (Fisher's exact test), Q value = 0.56

Table S2185.  Gene #229: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
BTAF1 MUTATED 0 5 5 3 6 3 1
BTAF1 WILD-TYPE 72 104 85 41 43 43 67

Figure S247.  Get High-res Image Gene #229: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BTAF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0803 (Fisher's exact test), Q value = 0.68

Table S2186.  Gene #229: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
BTAF1 MUTATED 5 15 2
BTAF1 WILD-TYPE 170 196 88
'BTAF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0192 (Fisher's exact test), Q value = 0.43

Table S2187.  Gene #229: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
BTAF1 MUTATED 4 9 1 8
BTAF1 WILD-TYPE 66 177 130 81

Figure S248.  Get High-res Image Gene #229: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'BTAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S2188.  Gene #229: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
BTAF1 MUTATED 6 7 5
BTAF1 WILD-TYPE 135 175 84
'BTAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S2189.  Gene #229: 'BTAF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
BTAF1 MUTATED 3 13 2
BTAF1 WILD-TYPE 91 220 83
'RGS20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.97

Table S2190.  Gene #230: 'RGS20 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
RGS20 MUTATED 2 2 0 3
RGS20 WILD-TYPE 63 208 72 128
'RGS20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.88

Table S2191.  Gene #230: 'RGS20 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
RGS20 MUTATED 0 2 4
RGS20 WILD-TYPE 131 136 157
'RGS20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.83

Table S2192.  Gene #230: 'RGS20 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
RGS20 MUTATED 0 4 3
RGS20 WILD-TYPE 150 181 140
'RGS20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S2193.  Gene #230: 'RGS20 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
RGS20 MUTATED 1 3 2 0 1 0 0
RGS20 WILD-TYPE 71 106 88 44 48 46 68
'RGS20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0682 (Fisher's exact test), Q value = 0.65

Table S2194.  Gene #230: 'RGS20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
RGS20 MUTATED 0 6 1
RGS20 WILD-TYPE 175 205 89
'RGS20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.74

Table S2195.  Gene #230: 'RGS20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
RGS20 MUTATED 0 4 0 3
RGS20 WILD-TYPE 70 182 131 86
'RGS20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S2196.  Gene #230: 'RGS20 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
RGS20 MUTATED 2 4 0
RGS20 WILD-TYPE 139 178 89
'RGS20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S2197.  Gene #230: 'RGS20 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
RGS20 MUTATED 2 4 0
RGS20 WILD-TYPE 92 229 85
'ITLN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0487 (Fisher's exact test), Q value = 0.62

Table S2198.  Gene #231: 'ITLN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ITLN1 MUTATED 0 6 3 0
ITLN1 WILD-TYPE 65 204 69 131

Figure S249.  Get High-res Image Gene #231: 'ITLN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ITLN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.78

Table S2199.  Gene #231: 'ITLN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ITLN1 MUTATED 1 5 1
ITLN1 WILD-TYPE 130 133 160
'ITLN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.84

Table S2200.  Gene #231: 'ITLN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ITLN1 MUTATED 1 3 5
ITLN1 WILD-TYPE 149 182 138
'ITLN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.73

Table S2201.  Gene #231: 'ITLN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ITLN1 MUTATED 1 0 3 2 2 1 0
ITLN1 WILD-TYPE 71 109 87 42 47 45 68
'ITLN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.88

Table S2202.  Gene #231: 'ITLN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ITLN1 MUTATED 1 6 2
ITLN1 WILD-TYPE 174 205 88
'ITLN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.93

Table S2203.  Gene #231: 'ITLN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ITLN1 MUTATED 1 3 1 4
ITLN1 WILD-TYPE 69 183 130 85
'ITLN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2204.  Gene #231: 'ITLN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ITLN1 MUTATED 3 3 1
ITLN1 WILD-TYPE 138 179 88
'ITLN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2205.  Gene #231: 'ITLN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ITLN1 MUTATED 2 4 1
ITLN1 WILD-TYPE 92 229 84
'FIGNL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S2206.  Gene #232: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
FIGNL1 MUTATED 1 3 2 4
FIGNL1 WILD-TYPE 64 207 70 127
'FIGNL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.8

Table S2207.  Gene #232: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
FIGNL1 MUTATED 1 3 7
FIGNL1 WILD-TYPE 130 135 154
'FIGNL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S2208.  Gene #232: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
FIGNL1 MUTATED 0 3 1
FIGNL1 WILD-TYPE 42 68 62
'FIGNL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.93

Table S2209.  Gene #232: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
FIGNL1 MUTATED 1 1 0 2 0
FIGNL1 WILD-TYPE 38 31 43 28 32
'FIGNL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S2210.  Gene #232: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
FIGNL1 MUTATED 3 4 4
FIGNL1 WILD-TYPE 147 181 139
'FIGNL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S2211.  Gene #232: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
FIGNL1 MUTATED 2 3 2 1 0 2 1
FIGNL1 WILD-TYPE 70 106 88 43 49 44 67
'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2212.  Gene #232: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
FIGNL1 MUTATED 4 5 2
FIGNL1 WILD-TYPE 171 206 88
'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.73

Table S2213.  Gene #232: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
FIGNL1 MUTATED 2 2 2 5
FIGNL1 WILD-TYPE 68 184 129 84
'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S2214.  Gene #232: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
FIGNL1 MUTATED 5 4 2
FIGNL1 WILD-TYPE 136 178 87
'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S2215.  Gene #232: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
FIGNL1 MUTATED 1 7 3
FIGNL1 WILD-TYPE 93 226 82
'ABCF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S2216.  Gene #233: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ABCF3 MUTATED 0 3 2 3
ABCF3 WILD-TYPE 65 207 70 128
'ABCF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.96

Table S2217.  Gene #233: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ABCF3 MUTATED 2 1 5
ABCF3 WILD-TYPE 129 137 156
'ABCF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S2218.  Gene #233: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ABCF3 MUTATED 1 4 3
ABCF3 WILD-TYPE 149 181 140
'ABCF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S2219.  Gene #233: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ABCF3 MUTATED 1 3 2 0 1 0 1
ABCF3 WILD-TYPE 71 106 88 44 48 46 67
'ABCF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S2220.  Gene #233: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ABCF3 MUTATED 2 4 2
ABCF3 WILD-TYPE 173 207 88
'ABCF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.81

Table S2221.  Gene #233: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ABCF3 MUTATED 0 2 2 4
ABCF3 WILD-TYPE 70 184 129 85
'ABCF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S2222.  Gene #233: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ABCF3 MUTATED 2 3 3
ABCF3 WILD-TYPE 139 179 86
'ABCF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.84

Table S2223.  Gene #233: 'ABCF3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ABCF3 MUTATED 0 5 3
ABCF3 WILD-TYPE 94 228 82
'KSR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S2224.  Gene #234: 'KSR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
KSR1 MUTATED 2 4 1 5
KSR1 WILD-TYPE 63 206 71 126
'KSR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S2225.  Gene #234: 'KSR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
KSR1 MUTATED 2 5 4
KSR1 WILD-TYPE 129 133 157
'KSR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0569 (Fisher's exact test), Q value = 0.62

Table S2226.  Gene #234: 'KSR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
KSR1 MUTATED 0 0 3
KSR1 WILD-TYPE 42 71 60
'KSR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S2227.  Gene #234: 'KSR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
KSR1 MUTATED 0 0 1 1 1
KSR1 WILD-TYPE 39 32 42 29 31
'KSR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.81

Table S2228.  Gene #234: 'KSR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
KSR1 MUTATED 1 7 4
KSR1 WILD-TYPE 149 178 139
'KSR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.93

Table S2229.  Gene #234: 'KSR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
KSR1 MUTATED 2 4 5 1 0 0 0
KSR1 WILD-TYPE 70 105 85 43 49 46 68
'KSR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S2230.  Gene #234: 'KSR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
KSR1 MUTATED 3 7 2
KSR1 WILD-TYPE 172 204 88
'KSR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S2231.  Gene #234: 'KSR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
KSR1 MUTATED 2 6 1 3
KSR1 WILD-TYPE 68 180 130 86
'KSR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S2232.  Gene #234: 'KSR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
KSR1 MUTATED 4 6 1
KSR1 WILD-TYPE 137 176 88
'KSR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S2233.  Gene #234: 'KSR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
KSR1 MUTATED 1 7 3
KSR1 WILD-TYPE 93 226 82
'ARAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S2234.  Gene #235: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ARAP3 MUTATED 4 6 2 5
ARAP3 WILD-TYPE 61 204 70 126
'ARAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S2235.  Gene #235: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ARAP3 MUTATED 3 6 5
ARAP3 WILD-TYPE 128 132 156
'ARAP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.73

Table S2236.  Gene #235: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ARAP3 MUTATED 2 0 1
ARAP3 WILD-TYPE 40 71 62
'ARAP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.78

Table S2237.  Gene #235: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ARAP3 MUTATED 0 2 0 0 1
ARAP3 WILD-TYPE 39 30 43 30 31
'ARAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.76

Table S2238.  Gene #235: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ARAP3 MUTATED 2 6 8
ARAP3 WILD-TYPE 148 179 135
'ARAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S2239.  Gene #235: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ARAP3 MUTATED 2 4 4 3 2 1 0
ARAP3 WILD-TYPE 70 105 86 41 47 45 68
'ARAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S2240.  Gene #235: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ARAP3 MUTATED 6 8 2
ARAP3 WILD-TYPE 169 203 88
'ARAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.85

Table S2241.  Gene #235: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ARAP3 MUTATED 4 5 2 5
ARAP3 WILD-TYPE 66 181 129 84
'ARAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S2242.  Gene #235: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ARAP3 MUTATED 4 8 2
ARAP3 WILD-TYPE 137 174 87
'ARAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.82

Table S2243.  Gene #235: 'ARAP3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ARAP3 MUTATED 6 7 1
ARAP3 WILD-TYPE 88 226 84
'IPO9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.73

Table S2244.  Gene #236: 'IPO9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
IPO9 MUTATED 1 1 2 5
IPO9 WILD-TYPE 64 209 70 126
'IPO9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S2245.  Gene #236: 'IPO9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
IPO9 MUTATED 1 3 4
IPO9 WILD-TYPE 130 135 157
'IPO9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S2246.  Gene #236: 'IPO9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
IPO9 MUTATED 1 2 0
IPO9 WILD-TYPE 41 69 63
'IPO9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S2247.  Gene #236: 'IPO9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
IPO9 MUTATED 1 0 2 0 0
IPO9 WILD-TYPE 38 32 41 30 32
'IPO9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.73

Table S2248.  Gene #236: 'IPO9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
IPO9 MUTATED 3 6 0
IPO9 WILD-TYPE 147 179 143
'IPO9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0835 (Fisher's exact test), Q value = 0.68

Table S2249.  Gene #236: 'IPO9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
IPO9 MUTATED 1 1 6 0 0 0 1
IPO9 WILD-TYPE 71 108 84 44 49 46 67
'IPO9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S2250.  Gene #236: 'IPO9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
IPO9 MUTATED 2 6 1
IPO9 WILD-TYPE 173 205 89
'IPO9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.83

Table S2251.  Gene #236: 'IPO9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
IPO9 MUTATED 0 2 3 4
IPO9 WILD-TYPE 70 184 128 85
'IPO9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S2252.  Gene #236: 'IPO9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
IPO9 MUTATED 3 4 0
IPO9 WILD-TYPE 138 178 89
'IPO9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S2253.  Gene #236: 'IPO9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
IPO9 MUTATED 0 5 2
IPO9 WILD-TYPE 94 228 83
'SLC26A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.84

Table S2254.  Gene #237: 'SLC26A4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SLC26A4 MUTATED 3 2 2 4
SLC26A4 WILD-TYPE 62 208 70 127
'SLC26A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0483 (Fisher's exact test), Q value = 0.62

Table S2255.  Gene #237: 'SLC26A4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SLC26A4 MUTATED 0 6 4
SLC26A4 WILD-TYPE 131 132 157

Figure S250.  Get High-res Image Gene #237: 'SLC26A4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SLC26A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S2256.  Gene #237: 'SLC26A4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SLC26A4 MUTATED 0 2 3
SLC26A4 WILD-TYPE 42 69 60
'SLC26A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S2257.  Gene #237: 'SLC26A4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SLC26A4 MUTATED 0 1 3 0 1
SLC26A4 WILD-TYPE 39 31 40 30 31
'SLC26A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.91

Table S2258.  Gene #237: 'SLC26A4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SLC26A4 MUTATED 1 6 4
SLC26A4 WILD-TYPE 149 179 139
'SLC26A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S2259.  Gene #237: 'SLC26A4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SLC26A4 MUTATED 1 3 4 1 1 1 0
SLC26A4 WILD-TYPE 71 106 86 43 48 45 68
'SLC26A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0676 (Fisher's exact test), Q value = 0.65

Table S2260.  Gene #237: 'SLC26A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SLC26A4 MUTATED 1 6 4
SLC26A4 WILD-TYPE 174 205 86
'SLC26A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.78

Table S2261.  Gene #237: 'SLC26A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SLC26A4 MUTATED 0 6 1 4
SLC26A4 WILD-TYPE 70 180 130 85
'SLC26A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S2262.  Gene #237: 'SLC26A4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SLC26A4 MUTATED 3 4 3
SLC26A4 WILD-TYPE 138 178 86
'SLC26A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S2263.  Gene #237: 'SLC26A4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SLC26A4 MUTATED 1 8 1
SLC26A4 WILD-TYPE 93 225 84
'MOCOS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S2264.  Gene #238: 'MOCOS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MOCOS MUTATED 1 3 2 3
MOCOS WILD-TYPE 64 207 70 128
'MOCOS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S2265.  Gene #238: 'MOCOS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MOCOS MUTATED 4 2 2
MOCOS WILD-TYPE 127 136 159
'MOCOS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.95

Table S2266.  Gene #238: 'MOCOS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
MOCOS MUTATED 0 4 1
MOCOS WILD-TYPE 42 67 62
'MOCOS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S2267.  Gene #238: 'MOCOS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
MOCOS MUTATED 2 0 2 0 1
MOCOS WILD-TYPE 37 32 41 30 31
'MOCOS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.9

Table S2268.  Gene #238: 'MOCOS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MOCOS MUTATED 2 6 1
MOCOS WILD-TYPE 148 179 142
'MOCOS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.97

Table S2269.  Gene #238: 'MOCOS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MOCOS MUTATED 0 3 4 0 0 0 2
MOCOS WILD-TYPE 72 106 86 44 49 46 66
'MOCOS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2270.  Gene #238: 'MOCOS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MOCOS MUTATED 3 4 2
MOCOS WILD-TYPE 172 207 88
'MOCOS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S2271.  Gene #238: 'MOCOS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MOCOS MUTATED 1 2 3 3
MOCOS WILD-TYPE 69 184 128 86
'MOCOS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S2272.  Gene #238: 'MOCOS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MOCOS MUTATED 2 3 3
MOCOS WILD-TYPE 139 179 86
'MOCOS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0707 (Fisher's exact test), Q value = 0.65

Table S2273.  Gene #238: 'MOCOS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MOCOS MUTATED 0 4 4
MOCOS WILD-TYPE 94 229 81
'MOGAT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S2274.  Gene #239: 'MOGAT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MOGAT2 MUTATED 1 2 2 3
MOGAT2 WILD-TYPE 64 208 70 128
'MOGAT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S2275.  Gene #239: 'MOGAT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MOGAT2 MUTATED 2 3 2
MOGAT2 WILD-TYPE 129 135 159
'MOGAT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.83

Table S2276.  Gene #239: 'MOGAT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
MOGAT2 MUTATED 0 1 4
MOGAT2 WILD-TYPE 42 70 59
'MOGAT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S2277.  Gene #239: 'MOGAT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
MOGAT2 MUTATED 1 1 1 2 0
MOGAT2 WILD-TYPE 38 31 42 28 32
'MOGAT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S2278.  Gene #239: 'MOGAT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MOGAT2 MUTATED 1 4 3
MOGAT2 WILD-TYPE 149 181 140
'MOGAT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.98

Table S2279.  Gene #239: 'MOGAT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MOGAT2 MUTATED 0 1 2 0 2 2 1
MOGAT2 WILD-TYPE 72 108 88 44 47 44 67
'MOGAT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.97

Table S2280.  Gene #239: 'MOGAT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MOGAT2 MUTATED 1 5 2
MOGAT2 WILD-TYPE 174 206 88
'MOGAT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.95

Table S2281.  Gene #239: 'MOGAT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MOGAT2 MUTATED 0 6 1 1
MOGAT2 WILD-TYPE 70 180 130 88
'MOGAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S2282.  Gene #239: 'MOGAT2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MOGAT2 MUTATED 2 3 2
MOGAT2 WILD-TYPE 139 179 87
'MOGAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0939 (Fisher's exact test), Q value = 0.72

Table S2283.  Gene #239: 'MOGAT2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MOGAT2 MUTATED 0 7 0
MOGAT2 WILD-TYPE 94 226 85
'ZKSCAN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0991 (Fisher's exact test), Q value = 0.73

Table S2284.  Gene #240: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ZKSCAN5 MUTATED 0 1 2 4
ZKSCAN5 WILD-TYPE 65 209 70 127
'ZKSCAN5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2285.  Gene #240: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ZKSCAN5 MUTATED 2 2 2
ZKSCAN5 WILD-TYPE 129 136 159
'ZKSCAN5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.83

Table S2286.  Gene #240: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ZKSCAN5 MUTATED 0 3 0
ZKSCAN5 WILD-TYPE 42 68 63
'ZKSCAN5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S2287.  Gene #240: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ZKSCAN5 MUTATED 0 0 2 1 0
ZKSCAN5 WILD-TYPE 39 32 41 29 32
'ZKSCAN5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.5

Table S2288.  Gene #240: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ZKSCAN5 MUTATED 0 6 1
ZKSCAN5 WILD-TYPE 150 179 142

Figure S251.  Get High-res Image Gene #240: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZKSCAN5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.99

Table S2289.  Gene #240: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ZKSCAN5 MUTATED 0 4 2 0 0 1 0
ZKSCAN5 WILD-TYPE 72 105 88 44 49 45 68
'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0677 (Fisher's exact test), Q value = 0.65

Table S2290.  Gene #240: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ZKSCAN5 MUTATED 0 6 1
ZKSCAN5 WILD-TYPE 175 205 89
'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0844 (Fisher's exact test), Q value = 0.68

Table S2291.  Gene #240: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ZKSCAN5 MUTATED 0 6 0 1
ZKSCAN5 WILD-TYPE 70 180 131 88
'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.083 (Fisher's exact test), Q value = 0.68

Table S2292.  Gene #240: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ZKSCAN5 MUTATED 0 3 3
ZKSCAN5 WILD-TYPE 141 179 86
'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.78

Table S2293.  Gene #240: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ZKSCAN5 MUTATED 0 6 0
ZKSCAN5 WILD-TYPE 94 227 85
'GPR150 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S2294.  Gene #241: 'GPR150 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
GPR150 MUTATED 0 1 0 2
GPR150 WILD-TYPE 65 209 72 129
'GPR150 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.73

Table S2295.  Gene #241: 'GPR150 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
GPR150 MUTATED 0 0 3
GPR150 WILD-TYPE 131 138 158
'GPR150 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.73

Table S2296.  Gene #241: 'GPR150 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
GPR150 MUTATED 0 3 0
GPR150 WILD-TYPE 150 182 143
'GPR150 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.94

Table S2297.  Gene #241: 'GPR150 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
GPR150 MUTATED 0 3 0 0 0 0 0
GPR150 WILD-TYPE 72 106 90 44 49 46 68
'GPR150 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 0.72

Table S2298.  Gene #241: 'GPR150 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
GPR150 MUTATED 0 1 2
GPR150 WILD-TYPE 175 210 88
'GPR150 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S2299.  Gene #241: 'GPR150 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
GPR150 MUTATED 1 2 0 0
GPR150 WILD-TYPE 69 184 131 89
'GPR150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0097 (Fisher's exact test), Q value = 0.33

Table S2300.  Gene #241: 'GPR150 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
GPR150 MUTATED 0 0 3
GPR150 WILD-TYPE 141 182 86

Figure S252.  Get High-res Image Gene #241: 'GPR150 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GPR150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S2301.  Gene #241: 'GPR150 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
GPR150 MUTATED 0 3 0
GPR150 WILD-TYPE 94 230 85
'MGAT5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S2302.  Gene #242: 'MGAT5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MGAT5B MUTATED 2 6 4 7
MGAT5B WILD-TYPE 63 204 68 124
'MGAT5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.73

Table S2303.  Gene #242: 'MGAT5B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MGAT5B MUTATED 2 9 7
MGAT5B WILD-TYPE 129 129 154
'MGAT5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.99

Table S2304.  Gene #242: 'MGAT5B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
MGAT5B MUTATED 0 1 3
MGAT5B WILD-TYPE 42 70 60
'MGAT5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.97

Table S2305.  Gene #242: 'MGAT5B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
MGAT5B MUTATED 0 1 1 2 0
MGAT5B WILD-TYPE 39 31 42 28 32
'MGAT5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0229 (Fisher's exact test), Q value = 0.48

Table S2306.  Gene #242: 'MGAT5B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MGAT5B MUTATED 1 11 7
MGAT5B WILD-TYPE 149 174 136

Figure S253.  Get High-res Image Gene #242: 'MGAT5B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MGAT5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.97

Table S2307.  Gene #242: 'MGAT5B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MGAT5B MUTATED 0 7 5 2 1 2 2
MGAT5B WILD-TYPE 72 102 85 42 48 44 66
'MGAT5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S2308.  Gene #242: 'MGAT5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MGAT5B MUTATED 5 11 3
MGAT5B WILD-TYPE 170 200 87
'MGAT5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0781 (Fisher's exact test), Q value = 0.67

Table S2309.  Gene #242: 'MGAT5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MGAT5B MUTATED 3 9 1 6
MGAT5B WILD-TYPE 67 177 130 83
'MGAT5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.83

Table S2310.  Gene #242: 'MGAT5B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MGAT5B MUTATED 5 11 1
MGAT5B WILD-TYPE 136 171 88
'MGAT5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S2311.  Gene #242: 'MGAT5B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MGAT5B MUTATED 3 12 2
MGAT5B WILD-TYPE 91 221 83
'AGXT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0488 (Fisher's exact test), Q value = 0.62

Table S2312.  Gene #243: 'AGXT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
AGXT MUTATED 0 1 3 4
AGXT WILD-TYPE 65 209 69 127

Figure S254.  Get High-res Image Gene #243: 'AGXT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AGXT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S2313.  Gene #243: 'AGXT MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
AGXT MUTATED 1 3 4
AGXT WILD-TYPE 130 135 157
'AGXT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.99

Table S2314.  Gene #243: 'AGXT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
AGXT MUTATED 1 5 2
AGXT WILD-TYPE 149 180 141
'AGXT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0406 (Fisher's exact test), Q value = 0.58

Table S2315.  Gene #243: 'AGXT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
AGXT MUTATED 0 5 0 0 1 2 0
AGXT WILD-TYPE 72 104 90 44 48 44 68

Figure S255.  Get High-res Image Gene #243: 'AGXT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'AGXT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S2316.  Gene #243: 'AGXT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
AGXT MUTATED 2 4 2
AGXT WILD-TYPE 173 207 88
'AGXT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S2317.  Gene #243: 'AGXT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
AGXT MUTATED 0 3 2 3
AGXT WILD-TYPE 70 183 129 86
'AGXT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0443 (Fisher's exact test), Q value = 0.6

Table S2318.  Gene #243: 'AGXT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
AGXT MUTATED 6 1 1
AGXT WILD-TYPE 135 181 88

Figure S256.  Get High-res Image Gene #243: 'AGXT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'AGXT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.84

Table S2319.  Gene #243: 'AGXT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
AGXT MUTATED 0 5 3
AGXT WILD-TYPE 94 228 82
'PBRM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S2320.  Gene #244: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PBRM1 MUTATED 0 4 2 2
PBRM1 WILD-TYPE 65 206 70 129
'PBRM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.88

Table S2321.  Gene #244: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PBRM1 MUTATED 0 2 4
PBRM1 WILD-TYPE 131 136 157
'PBRM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S2322.  Gene #244: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
PBRM1 MUTATED 1 2 0
PBRM1 WILD-TYPE 41 69 63
'PBRM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2323.  Gene #244: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
PBRM1 MUTATED 1 0 1 0 1
PBRM1 WILD-TYPE 38 32 42 30 31
'PBRM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.99

Table S2324.  Gene #244: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PBRM1 MUTATED 1 5 2
PBRM1 WILD-TYPE 149 180 141
'PBRM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S2325.  Gene #244: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PBRM1 MUTATED 0 1 3 1 0 1 2
PBRM1 WILD-TYPE 72 108 87 43 49 45 66
'PBRM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S2326.  Gene #244: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PBRM1 MUTATED 2 4 2
PBRM1 WILD-TYPE 173 207 88
'PBRM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.73

Table S2327.  Gene #244: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PBRM1 MUTATED 2 3 0 3
PBRM1 WILD-TYPE 68 183 131 86
'PBRM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S2328.  Gene #244: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PBRM1 MUTATED 3 2 1
PBRM1 WILD-TYPE 138 180 88
'PBRM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S2329.  Gene #244: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PBRM1 MUTATED 1 3 2
PBRM1 WILD-TYPE 93 230 83
'CREB5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S2330.  Gene #245: 'CREB5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CREB5 MUTATED 1 4 2 6
CREB5 WILD-TYPE 64 206 70 125
'CREB5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S2331.  Gene #245: 'CREB5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CREB5 MUTATED 4 2 5
CREB5 WILD-TYPE 127 136 156
'CREB5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.99

Table S2332.  Gene #245: 'CREB5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
CREB5 MUTATED 0 1 3
CREB5 WILD-TYPE 42 70 60
'CREB5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S2333.  Gene #245: 'CREB5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
CREB5 MUTATED 0 1 2 1 0
CREB5 WILD-TYPE 39 31 41 29 32
'CREB5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.94

Table S2334.  Gene #245: 'CREB5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CREB5 MUTATED 3 8 2
CREB5 WILD-TYPE 147 177 141
'CREB5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S2335.  Gene #245: 'CREB5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CREB5 MUTATED 2 2 3 1 0 1 4
CREB5 WILD-TYPE 70 107 87 43 49 45 64
'CREB5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S2336.  Gene #245: 'CREB5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CREB5 MUTATED 4 8 1
CREB5 WILD-TYPE 171 203 89
'CREB5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S2337.  Gene #245: 'CREB5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CREB5 MUTATED 1 5 4 3
CREB5 WILD-TYPE 69 181 127 86
'CREB5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S2338.  Gene #245: 'CREB5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CREB5 MUTATED 3 5 3
CREB5 WILD-TYPE 138 177 86
'CREB5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S2339.  Gene #245: 'CREB5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CREB5 MUTATED 1 7 3
CREB5 WILD-TYPE 93 226 82
'CD300E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.84

Table S2340.  Gene #246: 'CD300E MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CD300E MUTATED 0 2 3 2
CD300E WILD-TYPE 65 208 69 129
'CD300E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.76

Table S2341.  Gene #246: 'CD300E MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CD300E MUTATED 0 2 5
CD300E WILD-TYPE 131 136 156
'CD300E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S2342.  Gene #246: 'CD300E MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CD300E MUTATED 1 4 2
CD300E WILD-TYPE 149 181 141
'CD300E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S2343.  Gene #246: 'CD300E MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CD300E MUTATED 1 2 2 0 0 0 2
CD300E WILD-TYPE 71 107 88 44 49 46 66
'CD300E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0813 (Fisher's exact test), Q value = 0.68

Table S2344.  Gene #246: 'CD300E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CD300E MUTATED 0 5 2
CD300E WILD-TYPE 175 206 88
'CD300E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S2345.  Gene #246: 'CD300E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CD300E MUTATED 0 5 1 1
CD300E WILD-TYPE 70 181 130 88
'CD300E MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2346.  Gene #246: 'CD300E MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CD300E MUTATED 3 3 1
CD300E WILD-TYPE 138 179 88
'CD300E MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S2347.  Gene #246: 'CD300E MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CD300E MUTATED 1 5 1
CD300E WILD-TYPE 93 228 84
'ZNF623 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S2348.  Gene #247: 'ZNF623 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ZNF623 MUTATED 2 3 1 3
ZNF623 WILD-TYPE 63 207 71 128
'ZNF623 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S2349.  Gene #247: 'ZNF623 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ZNF623 MUTATED 1 3 2
ZNF623 WILD-TYPE 130 135 159
'ZNF623 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.95

Table S2350.  Gene #247: 'ZNF623 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ZNF623 MUTATED 0 4 1
ZNF623 WILD-TYPE 42 67 62
'ZNF623 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S2351.  Gene #247: 'ZNF623 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ZNF623 MUTATED 1 2 2 0 0
ZNF623 WILD-TYPE 38 30 41 30 32
'ZNF623 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.73

Table S2352.  Gene #247: 'ZNF623 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ZNF623 MUTATED 0 5 4
ZNF623 WILD-TYPE 150 180 139
'ZNF623 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S2353.  Gene #247: 'ZNF623 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ZNF623 MUTATED 0 2 3 1 2 1 0
ZNF623 WILD-TYPE 72 107 87 43 47 45 68
'ZNF623 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.77

Table S2354.  Gene #247: 'ZNF623 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ZNF623 MUTATED 1 7 1
ZNF623 WILD-TYPE 174 204 89
'ZNF623 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S2355.  Gene #247: 'ZNF623 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ZNF623 MUTATED 0 5 2 2
ZNF623 WILD-TYPE 70 181 129 87
'ZNF623 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.93

Table S2356.  Gene #247: 'ZNF623 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ZNF623 MUTATED 4 2 0
ZNF623 WILD-TYPE 137 180 89
'ZNF623 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2357.  Gene #247: 'ZNF623 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ZNF623 MUTATED 1 4 1
ZNF623 WILD-TYPE 93 229 84
'CYSLTR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S2358.  Gene #248: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CYSLTR2 MUTATED 0 4 1 4
CYSLTR2 WILD-TYPE 65 206 71 127
'CYSLTR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S2359.  Gene #248: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CYSLTR2 MUTATED 2 4 2
CYSLTR2 WILD-TYPE 129 134 159
'CYSLTR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S2360.  Gene #248: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CYSLTR2 MUTATED 2 4 2
CYSLTR2 WILD-TYPE 148 181 141
'CYSLTR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.99

Table S2361.  Gene #248: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CYSLTR2 MUTATED 0 1 4 1 0 1 1
CYSLTR2 WILD-TYPE 72 108 86 43 49 45 67
'CYSLTR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.97

Table S2362.  Gene #248: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CYSLTR2 MUTATED 1 5 2
CYSLTR2 WILD-TYPE 174 206 88
'CYSLTR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0133 (Fisher's exact test), Q value = 0.37

Table S2363.  Gene #248: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CYSLTR2 MUTATED 1 2 0 5
CYSLTR2 WILD-TYPE 69 184 131 84

Figure S257.  Get High-res Image Gene #248: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CYSLTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0357 (Fisher's exact test), Q value = 0.56

Table S2364.  Gene #248: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CYSLTR2 MUTATED 0 4 4
CYSLTR2 WILD-TYPE 141 178 85

Figure S258.  Get High-res Image Gene #248: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CYSLTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.97

Table S2365.  Gene #248: 'CYSLTR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CYSLTR2 MUTATED 0 6 2
CYSLTR2 WILD-TYPE 94 227 83
'BCL9L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S2366.  Gene #249: 'BCL9L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
BCL9L MUTATED 2 7 2 6
BCL9L WILD-TYPE 63 203 70 125
'BCL9L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0954 (Fisher's exact test), Q value = 0.72

Table S2367.  Gene #249: 'BCL9L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
BCL9L MUTATED 5 8 2
BCL9L WILD-TYPE 126 130 159
'BCL9L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.95

Table S2368.  Gene #249: 'BCL9L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
BCL9L MUTATED 0 4 4
BCL9L WILD-TYPE 42 67 59
'BCL9L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.99

Table S2369.  Gene #249: 'BCL9L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
BCL9L MUTATED 1 1 3 3 0
BCL9L WILD-TYPE 38 31 40 27 32
'BCL9L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.84

Table S2370.  Gene #249: 'BCL9L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
BCL9L MUTATED 2 9 6
BCL9L WILD-TYPE 148 176 137
'BCL9L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.88

Table S2371.  Gene #249: 'BCL9L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
BCL9L MUTATED 0 4 6 1 3 2 1
BCL9L WILD-TYPE 72 105 84 43 46 44 67
'BCL9L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S2372.  Gene #249: 'BCL9L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
BCL9L MUTATED 6 6 5
BCL9L WILD-TYPE 169 205 85
'BCL9L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S2373.  Gene #249: 'BCL9L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
BCL9L MUTATED 3 6 3 5
BCL9L WILD-TYPE 67 180 128 84
'BCL9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S2374.  Gene #249: 'BCL9L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
BCL9L MUTATED 5 5 5
BCL9L WILD-TYPE 136 177 84
'BCL9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S2375.  Gene #249: 'BCL9L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
BCL9L MUTATED 2 8 5
BCL9L WILD-TYPE 92 225 80
'ZFP36L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S2376.  Gene #250: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ZFP36L1 MUTATED 3 5 1 2
ZFP36L1 WILD-TYPE 62 205 71 129
'ZFP36L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.94

Table S2377.  Gene #250: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ZFP36L1 MUTATED 4 1 5
ZFP36L1 WILD-TYPE 127 137 156
'ZFP36L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.9

Table S2378.  Gene #250: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ZFP36L1 MUTATED 3 1 1
ZFP36L1 WILD-TYPE 39 70 62
'ZFP36L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S2379.  Gene #250: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ZFP36L1 MUTATED 1 2 1 1 0
ZFP36L1 WILD-TYPE 38 30 42 29 32
'ZFP36L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S2380.  Gene #250: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ZFP36L1 MUTATED 4 5 2
ZFP36L1 WILD-TYPE 146 180 141
'ZFP36L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S2381.  Gene #250: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ZFP36L1 MUTATED 3 2 1 2 1 1 1
ZFP36L1 WILD-TYPE 69 107 89 42 48 45 67
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S2382.  Gene #250: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ZFP36L1 MUTATED 5 4 2
ZFP36L1 WILD-TYPE 170 207 88
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S2383.  Gene #250: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ZFP36L1 MUTATED 1 5 4 1
ZFP36L1 WILD-TYPE 69 181 127 88
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.96

Table S2384.  Gene #250: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ZFP36L1 MUTATED 6 3 1
ZFP36L1 WILD-TYPE 135 179 88
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S2385.  Gene #250: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ZFP36L1 MUTATED 3 4 3
ZFP36L1 WILD-TYPE 91 229 82
'PALM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.97

Table S2386.  Gene #251: 'PALM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PALM MUTATED 1 1 1 3
PALM WILD-TYPE 64 209 71 128
'PALM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S2387.  Gene #251: 'PALM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PALM MUTATED 0 2 3
PALM WILD-TYPE 131 136 158
'PALM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.84

Table S2388.  Gene #251: 'PALM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PALM MUTATED 0 4 2
PALM WILD-TYPE 150 181 141
'PALM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.79

Table S2389.  Gene #251: 'PALM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PALM MUTATED 0 4 0 0 1 1 0
PALM WILD-TYPE 72 105 90 44 48 45 68
'PALM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.84

Table S2390.  Gene #251: 'PALM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PALM MUTATED 1 5 0
PALM WILD-TYPE 174 206 90
'PALM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.8

Table S2391.  Gene #251: 'PALM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PALM MUTATED 0 5 0 1
PALM WILD-TYPE 70 181 131 88
'PALM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.88

Table S2392.  Gene #251: 'PALM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PALM MUTATED 0 4 1
PALM WILD-TYPE 141 178 88
'PALM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.88

Table S2393.  Gene #251: 'PALM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PALM MUTATED 0 5 0
PALM WILD-TYPE 94 228 85
'CSNK1A1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.97

Table S2394.  Gene #252: 'CSNK1A1L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CSNK1A1L MUTATED 2 3 2 6
CSNK1A1L WILD-TYPE 63 207 70 125
'CSNK1A1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S2395.  Gene #252: 'CSNK1A1L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CSNK1A1L MUTATED 2 6 4
CSNK1A1L WILD-TYPE 129 132 157
'CSNK1A1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2396.  Gene #252: 'CSNK1A1L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
CSNK1A1L MUTATED 1 1 1
CSNK1A1L WILD-TYPE 41 70 62
'CSNK1A1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S2397.  Gene #252: 'CSNK1A1L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
CSNK1A1L MUTATED 0 1 2 0 0
CSNK1A1L WILD-TYPE 39 31 41 30 32
'CSNK1A1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S2398.  Gene #252: 'CSNK1A1L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CSNK1A1L MUTATED 3 5 5
CSNK1A1L WILD-TYPE 147 180 138
'CSNK1A1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S2399.  Gene #252: 'CSNK1A1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CSNK1A1L MUTATED 1 4 2 1 1 2 2
CSNK1A1L WILD-TYPE 71 105 88 43 48 44 66
'CSNK1A1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S2400.  Gene #252: 'CSNK1A1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CSNK1A1L MUTATED 3 8 1
CSNK1A1L WILD-TYPE 172 203 89
'CSNK1A1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S2401.  Gene #252: 'CSNK1A1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CSNK1A1L MUTATED 1 7 2 2
CSNK1A1L WILD-TYPE 69 179 129 87
'CSNK1A1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S2402.  Gene #252: 'CSNK1A1L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CSNK1A1L MUTATED 4 5 3
CSNK1A1L WILD-TYPE 137 177 86
'CSNK1A1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.91

Table S2403.  Gene #252: 'CSNK1A1L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CSNK1A1L MUTATED 1 10 1
CSNK1A1L WILD-TYPE 93 223 84
'SCML4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.8

Table S2404.  Gene #253: 'SCML4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SCML4 MUTATED 1 2 2 6
SCML4 WILD-TYPE 64 208 70 125
'SCML4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S2405.  Gene #253: 'SCML4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SCML4 MUTATED 2 4 4
SCML4 WILD-TYPE 129 134 157
'SCML4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2406.  Gene #253: 'SCML4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SCML4 MUTATED 1 2 1
SCML4 WILD-TYPE 41 69 62
'SCML4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S2407.  Gene #253: 'SCML4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SCML4 MUTATED 1 0 2 0 1
SCML4 WILD-TYPE 38 32 41 30 31
'SCML4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S2408.  Gene #253: 'SCML4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SCML4 MUTATED 3 5 3
SCML4 WILD-TYPE 147 180 140
'SCML4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S2409.  Gene #253: 'SCML4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SCML4 MUTATED 1 5 3 1 0 0 1
SCML4 WILD-TYPE 71 104 87 43 49 46 67
'SCML4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2410.  Gene #253: 'SCML4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SCML4 MUTATED 4 5 2
SCML4 WILD-TYPE 171 206 88
'SCML4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S2411.  Gene #253: 'SCML4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SCML4 MUTATED 0 5 3 3
SCML4 WILD-TYPE 70 181 128 86
'SCML4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S2412.  Gene #253: 'SCML4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SCML4 MUTATED 4 3 3
SCML4 WILD-TYPE 137 179 86
'SCML4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S2413.  Gene #253: 'SCML4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SCML4 MUTATED 1 7 2
SCML4 WILD-TYPE 93 226 83
'SLC11A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S2414.  Gene #254: 'SLC11A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SLC11A1 MUTATED 0 2 2 3
SLC11A1 WILD-TYPE 65 208 70 128
'SLC11A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.95

Table S2415.  Gene #254: 'SLC11A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SLC11A1 MUTATED 2 4 1
SLC11A1 WILD-TYPE 129 134 160
'SLC11A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S2416.  Gene #254: 'SLC11A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SLC11A1 MUTATED 1 1 3
SLC11A1 WILD-TYPE 41 70 60
'SLC11A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2417.  Gene #254: 'SLC11A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SLC11A1 MUTATED 1 1 1 1 1
SLC11A1 WILD-TYPE 38 31 42 29 31
'SLC11A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S2418.  Gene #254: 'SLC11A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SLC11A1 MUTATED 1 3 3
SLC11A1 WILD-TYPE 149 182 140
'SLC11A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S2419.  Gene #254: 'SLC11A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SLC11A1 MUTATED 0 1 3 1 0 1 1
SLC11A1 WILD-TYPE 72 108 87 43 49 45 67
'SLC11A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.96

Table S2420.  Gene #254: 'SLC11A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SLC11A1 MUTATED 2 5 0
SLC11A1 WILD-TYPE 173 206 90
'SLC11A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S2421.  Gene #254: 'SLC11A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SLC11A1 MUTATED 1 2 2 2
SLC11A1 WILD-TYPE 69 184 129 87
'SLC11A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.73

Table S2422.  Gene #254: 'SLC11A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SLC11A1 MUTATED 1 6 0
SLC11A1 WILD-TYPE 140 176 89
'SLC11A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S2423.  Gene #254: 'SLC11A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SLC11A1 MUTATED 1 5 1
SLC11A1 WILD-TYPE 93 228 84
'MOGAT3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.93

Table S2424.  Gene #255: 'MOGAT3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MOGAT3 MUTATED 0 3 2 5
MOGAT3 WILD-TYPE 65 207 70 126
'MOGAT3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S2425.  Gene #255: 'MOGAT3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MOGAT3 MUTATED 3 1 5
MOGAT3 WILD-TYPE 128 137 156
'MOGAT3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.084 (Fisher's exact test), Q value = 0.68

Table S2426.  Gene #255: 'MOGAT3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
MOGAT3 MUTATED 0 4 0
MOGAT3 WILD-TYPE 42 67 63
'MOGAT3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.9

Table S2427.  Gene #255: 'MOGAT3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
MOGAT3 MUTATED 1 0 3 0 0
MOGAT3 WILD-TYPE 38 32 40 30 32
'MOGAT3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.82

Table S2428.  Gene #255: 'MOGAT3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MOGAT3 MUTATED 2 7 1
MOGAT3 WILD-TYPE 148 178 142
'MOGAT3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.83

Table S2429.  Gene #255: 'MOGAT3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MOGAT3 MUTATED 0 6 1 0 1 0 2
MOGAT3 WILD-TYPE 72 103 89 44 48 46 66
'MOGAT3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0664 (Fisher's exact test), Q value = 0.65

Table S2430.  Gene #255: 'MOGAT3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MOGAT3 MUTATED 2 8 0
MOGAT3 WILD-TYPE 173 203 90
'MOGAT3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.93

Table S2431.  Gene #255: 'MOGAT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MOGAT3 MUTATED 0 4 2 4
MOGAT3 WILD-TYPE 70 182 129 85
'MOGAT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S2432.  Gene #255: 'MOGAT3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MOGAT3 MUTATED 2 5 2
MOGAT3 WILD-TYPE 139 177 87
'MOGAT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S2433.  Gene #255: 'MOGAT3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MOGAT3 MUTATED 1 7 1
MOGAT3 WILD-TYPE 93 226 84
'TULP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S2434.  Gene #256: 'TULP4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
TULP4 MUTATED 2 5 3 3
TULP4 WILD-TYPE 63 205 69 128
'TULP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S2435.  Gene #256: 'TULP4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
TULP4 MUTATED 3 3 6
TULP4 WILD-TYPE 128 135 155
'TULP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S2436.  Gene #256: 'TULP4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
TULP4 MUTATED 2 1 2
TULP4 WILD-TYPE 40 70 61
'TULP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.78

Table S2437.  Gene #256: 'TULP4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
TULP4 MUTATED 0 0 1 1 3
TULP4 WILD-TYPE 39 32 42 29 29
'TULP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S2438.  Gene #256: 'TULP4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
TULP4 MUTATED 3 5 5
TULP4 WILD-TYPE 147 180 138
'TULP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S2439.  Gene #256: 'TULP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
TULP4 MUTATED 3 2 2 0 3 2 1
TULP4 WILD-TYPE 69 107 88 44 46 44 67
'TULP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S2440.  Gene #256: 'TULP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
TULP4 MUTATED 3 8 1
TULP4 WILD-TYPE 172 203 89
'TULP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0709 (Fisher's exact test), Q value = 0.65

Table S2441.  Gene #256: 'TULP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
TULP4 MUTATED 0 9 1 2
TULP4 WILD-TYPE 70 177 130 87
'TULP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2442.  Gene #256: 'TULP4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
TULP4 MUTATED 4 6 2
TULP4 WILD-TYPE 137 176 87
'TULP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S2443.  Gene #256: 'TULP4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
TULP4 MUTATED 1 9 2
TULP4 WILD-TYPE 93 224 83
'ASB5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.86

Table S2444.  Gene #257: 'ASB5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ASB5 MUTATED 2 3 4 5
ASB5 WILD-TYPE 63 207 68 126
'ASB5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S2445.  Gene #257: 'ASB5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ASB5 MUTATED 2 6 5
ASB5 WILD-TYPE 129 132 156
'ASB5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S2446.  Gene #257: 'ASB5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ASB5 MUTATED 2 1 2
ASB5 WILD-TYPE 40 70 61
'ASB5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S2447.  Gene #257: 'ASB5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ASB5 MUTATED 0 1 1 2 1
ASB5 WILD-TYPE 39 31 42 28 31
'ASB5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.94

Table S2448.  Gene #257: 'ASB5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ASB5 MUTATED 2 8 4
ASB5 WILD-TYPE 148 177 139
'ASB5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S2449.  Gene #257: 'ASB5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ASB5 MUTATED 3 2 5 1 2 1 0
ASB5 WILD-TYPE 69 107 85 43 47 45 68
'ASB5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.84

Table S2450.  Gene #257: 'ASB5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ASB5 MUTATED 2 9 3
ASB5 WILD-TYPE 173 202 87
'ASB5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S2451.  Gene #257: 'ASB5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ASB5 MUTATED 1 6 3 4
ASB5 WILD-TYPE 69 180 128 85
'ASB5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S2452.  Gene #257: 'ASB5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ASB5 MUTATED 4 4 4
ASB5 WILD-TYPE 137 178 85
'ASB5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S2453.  Gene #257: 'ASB5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ASB5 MUTATED 3 8 1
ASB5 WILD-TYPE 91 225 84
'TDRD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S2454.  Gene #258: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
TDRD6 MUTATED 1 9 3 4
TDRD6 WILD-TYPE 64 201 69 127
'TDRD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S2455.  Gene #258: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
TDRD6 MUTATED 3 4 8
TDRD6 WILD-TYPE 128 134 153
'TDRD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S2456.  Gene #258: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
TDRD6 MUTATED 2 1 1
TDRD6 WILD-TYPE 40 70 62
'TDRD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.76

Table S2457.  Gene #258: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
TDRD6 MUTATED 2 0 0 0 2
TDRD6 WILD-TYPE 37 32 43 30 30
'TDRD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S2458.  Gene #258: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
TDRD6 MUTATED 7 7 3
TDRD6 WILD-TYPE 143 178 140
'TDRD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S2459.  Gene #258: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
TDRD6 MUTATED 2 5 4 1 3 0 2
TDRD6 WILD-TYPE 70 104 86 43 46 46 66
'TDRD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S2460.  Gene #258: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
TDRD6 MUTATED 6 9 2
TDRD6 WILD-TYPE 169 202 88
'TDRD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.96

Table S2461.  Gene #258: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
TDRD6 MUTATED 1 5 5 6
TDRD6 WILD-TYPE 69 181 126 83
'TDRD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S2462.  Gene #258: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
TDRD6 MUTATED 4 8 2
TDRD6 WILD-TYPE 137 174 87
'TDRD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2463.  Gene #258: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
TDRD6 MUTATED 3 8 3
TDRD6 WILD-TYPE 91 225 82
'COL12A1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S2464.  Gene #259: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
COL12A1 MUTATED 0 2 1 0
COL12A1 WILD-TYPE 5 5 4 3
'COL12A1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2465.  Gene #259: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
COL12A1 MUTATED 1 2 0
COL12A1 WILD-TYPE 6 7 4
'COL12A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00676 (Fisher's exact test), Q value = 0.29

Table S2466.  Gene #259: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
COL12A1 MUTATED 7 13 12 22
COL12A1 WILD-TYPE 58 197 60 109

Figure S259.  Get High-res Image Gene #259: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'COL12A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00513 (Fisher's exact test), Q value = 0.25

Table S2467.  Gene #259: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
COL12A1 MUTATED 6 23 19
COL12A1 WILD-TYPE 125 115 142

Figure S260.  Get High-res Image Gene #259: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'COL12A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.9

Table S2468.  Gene #259: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
COL12A1 MUTATED 4 4 9
COL12A1 WILD-TYPE 38 67 54
'COL12A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.76

Table S2469.  Gene #259: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
COL12A1 MUTATED 3 0 6 5 3
COL12A1 WILD-TYPE 36 32 37 25 29
'COL12A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.73

Table S2470.  Gene #259: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
COL12A1 MUTATED 10 25 18
COL12A1 WILD-TYPE 140 160 125
'COL12A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0485 (Fisher's exact test), Q value = 0.62

Table S2471.  Gene #259: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
COL12A1 MUTATED 6 13 17 3 5 7 2
COL12A1 WILD-TYPE 66 96 73 41 44 39 66

Figure S261.  Get High-res Image Gene #259: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'COL12A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00914 (Fisher's exact test), Q value = 0.33

Table S2472.  Gene #259: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
COL12A1 MUTATED 10 32 11
COL12A1 WILD-TYPE 165 179 79

Figure S262.  Get High-res Image Gene #259: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'COL12A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.025

Table S2473.  Gene #259: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
COL12A1 MUTATED 4 25 5 19
COL12A1 WILD-TYPE 66 161 126 70

Figure S263.  Get High-res Image Gene #259: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'COL12A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S2474.  Gene #259: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
COL12A1 MUTATED 15 19 13
COL12A1 WILD-TYPE 126 163 76
'COL12A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0138 (Fisher's exact test), Q value = 0.37

Table S2475.  Gene #259: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
COL12A1 MUTATED 4 35 8
COL12A1 WILD-TYPE 90 198 77

Figure S264.  Get High-res Image Gene #259: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SMOC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.83

Table S2476.  Gene #260: 'SMOC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SMOC1 MUTATED 0 7 0 5
SMOC1 WILD-TYPE 65 203 72 126
'SMOC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S2477.  Gene #260: 'SMOC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SMOC1 MUTATED 4 2 6
SMOC1 WILD-TYPE 127 136 155
'SMOC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.85

Table S2478.  Gene #260: 'SMOC1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SMOC1 MUTATED 2 3 0
SMOC1 WILD-TYPE 40 68 63
'SMOC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S2479.  Gene #260: 'SMOC1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SMOC1 MUTATED 2 1 1 0 1
SMOC1 WILD-TYPE 37 31 42 30 31
'SMOC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.83

Table S2480.  Gene #260: 'SMOC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SMOC1 MUTATED 2 8 2
SMOC1 WILD-TYPE 148 177 141
'SMOC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S2481.  Gene #260: 'SMOC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SMOC1 MUTATED 2 6 1 1 0 1 1
SMOC1 WILD-TYPE 70 103 89 43 49 45 67
'SMOC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S2482.  Gene #260: 'SMOC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SMOC1 MUTATED 5 6 1
SMOC1 WILD-TYPE 170 205 89
'SMOC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0552 (Fisher's exact test), Q value = 0.62

Table S2483.  Gene #260: 'SMOC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SMOC1 MUTATED 5 5 1 1
SMOC1 WILD-TYPE 65 181 130 88
'SMOC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2484.  Gene #260: 'SMOC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SMOC1 MUTATED 4 5 2
SMOC1 WILD-TYPE 137 177 87
'SMOC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2485.  Gene #260: 'SMOC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SMOC1 MUTATED 2 7 2
SMOC1 WILD-TYPE 92 226 83
'HSD11B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.99

Table S2486.  Gene #261: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
HSD11B1 MUTATED 0 3 0 4
HSD11B1 WILD-TYPE 65 207 72 127
'HSD11B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.88

Table S2487.  Gene #261: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
HSD11B1 MUTATED 0 2 4
HSD11B1 WILD-TYPE 131 136 157
'HSD11B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S2488.  Gene #261: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
HSD11B1 MUTATED 2 4 1
HSD11B1 WILD-TYPE 148 181 142
'HSD11B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S2489.  Gene #261: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
HSD11B1 MUTATED 2 2 3 0 0 0 0
HSD11B1 WILD-TYPE 70 107 87 44 49 46 68
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.73

Table S2490.  Gene #261: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
HSD11B1 MUTATED 1 6 0
HSD11B1 WILD-TYPE 174 205 90
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.87

Table S2491.  Gene #261: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
HSD11B1 MUTATED 1 5 0 1
HSD11B1 WILD-TYPE 69 181 131 88
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.79

Table S2492.  Gene #261: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
HSD11B1 MUTATED 0 4 0
HSD11B1 WILD-TYPE 141 178 89
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S2493.  Gene #261: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
HSD11B1 MUTATED 0 4 0
HSD11B1 WILD-TYPE 94 229 85
'COL7A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S2494.  Gene #262: 'COL7A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
COL7A1 MUTATED 4 12 4 13
COL7A1 WILD-TYPE 61 198 68 118
'COL7A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S2495.  Gene #262: 'COL7A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
COL7A1 MUTATED 7 9 13
COL7A1 WILD-TYPE 124 129 148
'COL7A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.9

Table S2496.  Gene #262: 'COL7A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
COL7A1 MUTATED 4 7 2
COL7A1 WILD-TYPE 38 64 61
'COL7A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S2497.  Gene #262: 'COL7A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
COL7A1 MUTATED 3 1 4 1 4
COL7A1 WILD-TYPE 36 31 39 29 28
'COL7A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S2498.  Gene #262: 'COL7A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
COL7A1 MUTATED 8 15 10
COL7A1 WILD-TYPE 142 170 133
'COL7A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S2499.  Gene #262: 'COL7A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
COL7A1 MUTATED 6 10 3 2 3 4 5
COL7A1 WILD-TYPE 66 99 87 42 46 42 63
'COL7A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0042 (Fisher's exact test), Q value = 0.24

Table S2500.  Gene #262: 'COL7A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
COL7A1 MUTATED 13 19 0
COL7A1 WILD-TYPE 162 192 90

Figure S265.  Get High-res Image Gene #262: 'COL7A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'COL7A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S2501.  Gene #262: 'COL7A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
COL7A1 MUTATED 6 12 7 7
COL7A1 WILD-TYPE 64 174 124 82
'COL7A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.052 (Fisher's exact test), Q value = 0.62

Table S2502.  Gene #262: 'COL7A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
COL7A1 MUTATED 8 18 2
COL7A1 WILD-TYPE 133 164 87
'COL7A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S2503.  Gene #262: 'COL7A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
COL7A1 MUTATED 4 19 5
COL7A1 WILD-TYPE 90 214 80
'C1ORF105 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S2504.  Gene #263: 'C1ORF105 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
C1ORF105 MUTATED 1 1 0 2
C1ORF105 WILD-TYPE 64 209 72 129
'C1ORF105 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S2505.  Gene #263: 'C1ORF105 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
C1ORF105 MUTATED 0 1 3
C1ORF105 WILD-TYPE 131 137 158
'C1ORF105 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.04 (Fisher's exact test), Q value = 0.58

Table S2506.  Gene #263: 'C1ORF105 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
C1ORF105 MUTATED 0 4 0
C1ORF105 WILD-TYPE 150 181 143

Figure S266.  Get High-res Image Gene #263: 'C1ORF105 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C1ORF105 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S2507.  Gene #263: 'C1ORF105 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
C1ORF105 MUTATED 0 2 2 0 0 0 0
C1ORF105 WILD-TYPE 72 107 88 44 49 46 68
'C1ORF105 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2508.  Gene #263: 'C1ORF105 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
C1ORF105 MUTATED 1 2 1
C1ORF105 WILD-TYPE 174 209 89
'C1ORF105 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S2509.  Gene #263: 'C1ORF105 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
C1ORF105 MUTATED 1 2 0 1
C1ORF105 WILD-TYPE 69 184 131 88
'C1ORF105 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.98

Table S2510.  Gene #263: 'C1ORF105 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
C1ORF105 MUTATED 0 3 1
C1ORF105 WILD-TYPE 141 179 88
'C1ORF105 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S2511.  Gene #263: 'C1ORF105 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
C1ORF105 MUTATED 0 4 0
C1ORF105 WILD-TYPE 94 229 85
'NDUFB11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S2512.  Gene #264: 'NDUFB11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
NDUFB11 MUTATED 0 3 0 3
NDUFB11 WILD-TYPE 65 207 72 128
'NDUFB11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S2513.  Gene #264: 'NDUFB11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
NDUFB11 MUTATED 1 1 4
NDUFB11 WILD-TYPE 130 137 157
'NDUFB11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0827 (Fisher's exact test), Q value = 0.68

Table S2514.  Gene #264: 'NDUFB11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
NDUFB11 MUTATED 1 5 0
NDUFB11 WILD-TYPE 149 180 143
'NDUFB11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S2515.  Gene #264: 'NDUFB11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
NDUFB11 MUTATED 0 3 2 0 0 0 1
NDUFB11 WILD-TYPE 72 106 88 44 49 46 67
'NDUFB11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.82

Table S2516.  Gene #264: 'NDUFB11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
NDUFB11 MUTATED 1 2 3
NDUFB11 WILD-TYPE 174 209 87
'NDUFB11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S2517.  Gene #264: 'NDUFB11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
NDUFB11 MUTATED 0 3 2 1
NDUFB11 WILD-TYPE 70 183 129 88
'NDUFB11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.96

Table S2518.  Gene #264: 'NDUFB11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
NDUFB11 MUTATED 1 2 3
NDUFB11 WILD-TYPE 140 180 86
'NDUFB11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2519.  Gene #264: 'NDUFB11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
NDUFB11 MUTATED 1 4 1
NDUFB11 WILD-TYPE 93 229 84
'CHM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.85

Table S2520.  Gene #265: 'CHM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CHM MUTATED 2 4 5 5
CHM WILD-TYPE 63 206 67 126
'CHM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 0.39

Table S2521.  Gene #265: 'CHM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CHM MUTATED 4 9 1
CHM WILD-TYPE 127 129 160

Figure S267.  Get High-res Image Gene #265: 'CHM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CHM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.99

Table S2522.  Gene #265: 'CHM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
CHM MUTATED 0 1 3
CHM WILD-TYPE 42 70 60
'CHM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S2523.  Gene #265: 'CHM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
CHM MUTATED 1 0 1 2 0
CHM WILD-TYPE 38 32 42 28 32
'CHM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0544 (Fisher's exact test), Q value = 0.62

Table S2524.  Gene #265: 'CHM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CHM MUTATED 3 11 2
CHM WILD-TYPE 147 174 141
'CHM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0675 (Fisher's exact test), Q value = 0.65

Table S2525.  Gene #265: 'CHM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CHM MUTATED 2 5 7 0 0 2 0
CHM WILD-TYPE 70 104 83 44 49 44 68
'CHM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 0.65

Table S2526.  Gene #265: 'CHM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CHM MUTATED 2 11 2
CHM WILD-TYPE 173 200 88
'CHM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0332 (Fisher's exact test), Q value = 0.54

Table S2527.  Gene #265: 'CHM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CHM MUTATED 0 10 1 4
CHM WILD-TYPE 70 176 130 85

Figure S268.  Get High-res Image Gene #265: 'CHM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CHM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.95

Table S2528.  Gene #265: 'CHM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CHM MUTATED 2 8 3
CHM WILD-TYPE 139 174 86
'CHM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.022 (Fisher's exact test), Q value = 0.47

Table S2529.  Gene #265: 'CHM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CHM MUTATED 0 12 1
CHM WILD-TYPE 94 221 84

Figure S269.  Get High-res Image Gene #265: 'CHM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TFDP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S2530.  Gene #266: 'TFDP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
TFDP1 MUTATED 1 3 2 2
TFDP1 WILD-TYPE 64 207 70 129
'TFDP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.83

Table S2531.  Gene #266: 'TFDP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
TFDP1 MUTATED 0 4 3
TFDP1 WILD-TYPE 131 134 158
'TFDP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.37

Table S2532.  Gene #266: 'TFDP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
TFDP1 MUTATED 3 0 0
TFDP1 WILD-TYPE 39 71 63

Figure S270.  Get High-res Image Gene #266: 'TFDP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'TFDP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.78

Table S2533.  Gene #266: 'TFDP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
TFDP1 MUTATED 0 1 0 0 2
TFDP1 WILD-TYPE 39 31 43 30 30
'TFDP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S2534.  Gene #266: 'TFDP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
TFDP1 MUTATED 3 2 3
TFDP1 WILD-TYPE 147 183 140
'TFDP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S2535.  Gene #266: 'TFDP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
TFDP1 MUTATED 2 1 1 2 1 0 1
TFDP1 WILD-TYPE 70 108 89 42 48 46 67
'TFDP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2536.  Gene #266: 'TFDP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
TFDP1 MUTATED 3 4 1
TFDP1 WILD-TYPE 172 207 89
'TFDP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S2537.  Gene #266: 'TFDP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
TFDP1 MUTATED 2 2 3 1
TFDP1 WILD-TYPE 68 184 128 88
'TFDP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S2538.  Gene #266: 'TFDP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
TFDP1 MUTATED 3 4 0
TFDP1 WILD-TYPE 138 178 89
'TFDP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S2539.  Gene #266: 'TFDP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
TFDP1 MUTATED 3 3 1
TFDP1 WILD-TYPE 91 230 84
'NLGN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.96

Table S2540.  Gene #267: 'NLGN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
NLGN2 MUTATED 0 3 1 5
NLGN2 WILD-TYPE 65 207 71 126
'NLGN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.81

Table S2541.  Gene #267: 'NLGN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
NLGN2 MUTATED 3 0 4
NLGN2 WILD-TYPE 128 138 157
'NLGN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2542.  Gene #267: 'NLGN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
NLGN2 MUTATED 1 2 1
NLGN2 WILD-TYPE 41 69 62
'NLGN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.73

Table S2543.  Gene #267: 'NLGN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
NLGN2 MUTATED 2 0 0 2 0
NLGN2 WILD-TYPE 37 32 43 28 32
'NLGN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0324 (Fisher's exact test), Q value = 0.54

Table S2544.  Gene #267: 'NLGN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
NLGN2 MUTATED 2 7 0
NLGN2 WILD-TYPE 148 178 143

Figure S271.  Get High-res Image Gene #267: 'NLGN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NLGN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S2545.  Gene #267: 'NLGN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
NLGN2 MUTATED 2 3 2 0 0 1 1
NLGN2 WILD-TYPE 70 106 88 44 49 45 67
'NLGN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S2546.  Gene #267: 'NLGN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
NLGN2 MUTATED 2 5 2
NLGN2 WILD-TYPE 173 206 88
'NLGN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S2547.  Gene #267: 'NLGN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
NLGN2 MUTATED 1 2 3 3
NLGN2 WILD-TYPE 69 184 128 86
'NLGN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S2548.  Gene #267: 'NLGN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
NLGN2 MUTATED 2 4 1
NLGN2 WILD-TYPE 139 178 88
'NLGN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.95

Table S2549.  Gene #267: 'NLGN2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
NLGN2 MUTATED 0 6 1
NLGN2 WILD-TYPE 94 227 84
'PLEKHG5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S2550.  Gene #268: 'PLEKHG5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PLEKHG5 MUTATED 0 4 0 3
PLEKHG5 WILD-TYPE 65 206 72 128
'PLEKHG5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S2551.  Gene #268: 'PLEKHG5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PLEKHG5 MUTATED 2 1 4
PLEKHG5 WILD-TYPE 129 137 157
'PLEKHG5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.85

Table S2552.  Gene #268: 'PLEKHG5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PLEKHG5 MUTATED 3 4 0
PLEKHG5 WILD-TYPE 147 181 143
'PLEKHG5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S2553.  Gene #268: 'PLEKHG5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PLEKHG5 MUTATED 1 3 1 0 0 1 1
PLEKHG5 WILD-TYPE 71 106 89 44 49 45 67
'PLEKHG5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.84

Table S2554.  Gene #268: 'PLEKHG5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PLEKHG5 MUTATED 1 3 3
PLEKHG5 WILD-TYPE 174 208 87
'PLEKHG5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S2555.  Gene #268: 'PLEKHG5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PLEKHG5 MUTATED 0 4 2 1
PLEKHG5 WILD-TYPE 70 182 129 88
'PLEKHG5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S2556.  Gene #268: 'PLEKHG5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PLEKHG5 MUTATED 2 3 2
PLEKHG5 WILD-TYPE 139 179 87
'PLEKHG5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S2557.  Gene #268: 'PLEKHG5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PLEKHG5 MUTATED 0 5 2
PLEKHG5 WILD-TYPE 94 228 83
'OR5P3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2558.  Gene #269: 'OR5P3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
OR5P3 MUTATED 0 2 0 1
OR5P3 WILD-TYPE 65 208 72 130
'OR5P3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S2559.  Gene #269: 'OR5P3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
OR5P3 MUTATED 1 0 2
OR5P3 WILD-TYPE 130 138 159
'OR5P3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2560.  Gene #269: 'OR5P3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
OR5P3 MUTATED 1 1 1
OR5P3 WILD-TYPE 149 184 142
'OR5P3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.95

Table S2561.  Gene #269: 'OR5P3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
OR5P3 MUTATED 0 1 0 1 0 1 0
OR5P3 WILD-TYPE 72 108 90 43 49 45 68
'OR5P3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S2562.  Gene #269: 'OR5P3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
OR5P3 MUTATED 0 2 1
OR5P3 WILD-TYPE 175 209 89
'OR5P3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S2563.  Gene #269: 'OR5P3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
OR5P3 MUTATED 0 2 0 1
OR5P3 WILD-TYPE 70 184 131 88
'OR5P3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S2564.  Gene #269: 'OR5P3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
OR5P3 MUTATED 1 1 1
OR5P3 WILD-TYPE 140 181 88
'OR5P3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2565.  Gene #269: 'OR5P3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
OR5P3 MUTATED 1 2 0
OR5P3 WILD-TYPE 93 231 85
'CHD5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.8

Table S2566.  Gene #270: 'CHD5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CHD5 MUTATED 6 10 2 12
CHD5 WILD-TYPE 59 200 70 119
'CHD5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.95

Table S2567.  Gene #270: 'CHD5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CHD5 MUTATED 6 13 11
CHD5 WILD-TYPE 125 125 150
'CHD5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S2568.  Gene #270: 'CHD5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
CHD5 MUTATED 1 2 4
CHD5 WILD-TYPE 41 69 59
'CHD5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2569.  Gene #270: 'CHD5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
CHD5 MUTATED 2 1 2 1 1
CHD5 WILD-TYPE 37 31 41 29 31
'CHD5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S2570.  Gene #270: 'CHD5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CHD5 MUTATED 8 14 8
CHD5 WILD-TYPE 142 171 135
'CHD5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S2571.  Gene #270: 'CHD5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CHD5 MUTATED 3 9 5 1 5 3 4
CHD5 WILD-TYPE 69 100 85 43 44 43 64
'CHD5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.73

Table S2572.  Gene #270: 'CHD5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CHD5 MUTATED 6 18 6
CHD5 WILD-TYPE 169 193 84
'CHD5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0191 (Fisher's exact test), Q value = 0.43

Table S2573.  Gene #270: 'CHD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CHD5 MUTATED 5 19 3 3
CHD5 WILD-TYPE 65 167 128 86

Figure S272.  Get High-res Image Gene #270: 'CHD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CHD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.83

Table S2574.  Gene #270: 'CHD5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CHD5 MUTATED 7 12 10
CHD5 WILD-TYPE 134 170 79
'CHD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00465 (Fisher's exact test), Q value = 0.24

Table S2575.  Gene #270: 'CHD5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CHD5 MUTATED 1 24 4
CHD5 WILD-TYPE 93 209 81

Figure S273.  Get High-res Image Gene #270: 'CHD5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FBXO34 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0395 (Fisher's exact test), Q value = 0.58

Table S2576.  Gene #271: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
FBXO34 MUTATED 1 0 2 3
FBXO34 WILD-TYPE 64 210 70 128

Figure S274.  Get High-res Image Gene #271: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FBXO34 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.95

Table S2577.  Gene #271: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
FBXO34 MUTATED 0 3 3
FBXO34 WILD-TYPE 131 135 158
'FBXO34 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 0.65

Table S2578.  Gene #271: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
FBXO34 MUTATED 0 5 1
FBXO34 WILD-TYPE 150 180 142
'FBXO34 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.99

Table S2579.  Gene #271: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
FBXO34 MUTATED 0 3 3 0 0 0 0
FBXO34 WILD-TYPE 72 106 87 44 49 46 68
'FBXO34 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.85

Table S2580.  Gene #271: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
FBXO34 MUTATED 1 5 0
FBXO34 WILD-TYPE 174 206 90
'FBXO34 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0424 (Fisher's exact test), Q value = 0.59

Table S2581.  Gene #271: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
FBXO34 MUTATED 0 6 0 0
FBXO34 WILD-TYPE 70 180 131 89

Figure S275.  Get High-res Image Gene #271: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FBXO34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.95

Table S2582.  Gene #271: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
FBXO34 MUTATED 1 4 0
FBXO34 WILD-TYPE 140 178 89
'FBXO34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S2583.  Gene #271: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
FBXO34 MUTATED 0 4 1
FBXO34 WILD-TYPE 94 229 84
'TXLNB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S2584.  Gene #272: 'TXLNB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
TXLNB MUTATED 1 7 4 5
TXLNB WILD-TYPE 64 203 68 126
'TXLNB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.97

Table S2585.  Gene #272: 'TXLNB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
TXLNB MUTATED 2 6 7
TXLNB WILD-TYPE 129 132 154
'TXLNB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S2586.  Gene #272: 'TXLNB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
TXLNB MUTATED 3 2 2
TXLNB WILD-TYPE 39 69 61
'TXLNB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S2587.  Gene #272: 'TXLNB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
TXLNB MUTATED 1 1 2 1 2
TXLNB WILD-TYPE 38 31 41 29 30
'TXLNB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S2588.  Gene #272: 'TXLNB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
TXLNB MUTATED 5 8 4
TXLNB WILD-TYPE 145 177 139
'TXLNB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S2589.  Gene #272: 'TXLNB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
TXLNB MUTATED 1 4 3 0 4 1 4
TXLNB WILD-TYPE 71 105 87 44 45 45 64
'TXLNB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.88

Table S2590.  Gene #272: 'TXLNB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
TXLNB MUTATED 3 10 4
TXLNB WILD-TYPE 172 201 86
'TXLNB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S2591.  Gene #272: 'TXLNB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
TXLNB MUTATED 1 6 5 5
TXLNB WILD-TYPE 69 180 126 84
'TXLNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S2592.  Gene #272: 'TXLNB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
TXLNB MUTATED 4 8 3
TXLNB WILD-TYPE 137 174 86
'TXLNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S2593.  Gene #272: 'TXLNB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
TXLNB MUTATED 2 10 3
TXLNB WILD-TYPE 92 223 82
'HSPA1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.84

Table S2594.  Gene #273: 'HSPA1L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
HSPA1L MUTATED 0 6 3 1
HSPA1L WILD-TYPE 65 204 69 130
'HSPA1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2595.  Gene #273: 'HSPA1L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
HSPA1L MUTATED 2 2 3
HSPA1L WILD-TYPE 129 136 158
'HSPA1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S2596.  Gene #273: 'HSPA1L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
HSPA1L MUTATED 1 1 2
HSPA1L WILD-TYPE 41 70 61
'HSPA1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S2597.  Gene #273: 'HSPA1L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
HSPA1L MUTATED 1 0 1 1 1
HSPA1L WILD-TYPE 38 32 42 29 31
'HSPA1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S2598.  Gene #273: 'HSPA1L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
HSPA1L MUTATED 2 6 2
HSPA1L WILD-TYPE 148 179 141
'HSPA1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S2599.  Gene #273: 'HSPA1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
HSPA1L MUTATED 1 2 2 0 2 2 1
HSPA1L WILD-TYPE 71 107 88 44 47 44 67
'HSPA1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S2600.  Gene #273: 'HSPA1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
HSPA1L MUTATED 2 7 1
HSPA1L WILD-TYPE 173 204 89
'HSPA1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00493 (Fisher's exact test), Q value = 0.25

Table S2601.  Gene #273: 'HSPA1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
HSPA1L MUTATED 0 4 0 6
HSPA1L WILD-TYPE 70 182 131 83

Figure S276.  Get High-res Image Gene #273: 'HSPA1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HSPA1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S2602.  Gene #273: 'HSPA1L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
HSPA1L MUTATED 1 4 2
HSPA1L WILD-TYPE 140 178 87
'HSPA1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.95

Table S2603.  Gene #273: 'HSPA1L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
HSPA1L MUTATED 0 6 1
HSPA1L WILD-TYPE 94 227 84
'NUMA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.83

Table S2604.  Gene #274: 'NUMA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
NUMA1 MUTATED 1 9 5 2
NUMA1 WILD-TYPE 64 201 67 129
'NUMA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S2605.  Gene #274: 'NUMA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
NUMA1 MUTATED 4 6 6
NUMA1 WILD-TYPE 127 132 155
'NUMA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2606.  Gene #274: 'NUMA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
NUMA1 MUTATED 1 2 2
NUMA1 WILD-TYPE 41 69 61
'NUMA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S2607.  Gene #274: 'NUMA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
NUMA1 MUTATED 0 1 3 0 1
NUMA1 WILD-TYPE 39 31 40 30 31
'NUMA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S2608.  Gene #274: 'NUMA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
NUMA1 MUTATED 4 7 6
NUMA1 WILD-TYPE 146 178 137
'NUMA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S2609.  Gene #274: 'NUMA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
NUMA1 MUTATED 2 6 5 2 1 1 0
NUMA1 WILD-TYPE 70 103 85 42 48 45 68
'NUMA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S2610.  Gene #274: 'NUMA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
NUMA1 MUTATED 4 10 3
NUMA1 WILD-TYPE 171 201 87
'NUMA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.91

Table S2611.  Gene #274: 'NUMA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
NUMA1 MUTATED 1 11 3 2
NUMA1 WILD-TYPE 69 175 128 87
'NUMA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S2612.  Gene #274: 'NUMA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
NUMA1 MUTATED 3 8 4
NUMA1 WILD-TYPE 138 174 85
'NUMA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S2613.  Gene #274: 'NUMA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
NUMA1 MUTATED 5 8 2
NUMA1 WILD-TYPE 89 225 83
'MEFV MUTATION STATUS' versus 'CN_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.95

Table S2614.  Gene #275: 'MEFV MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MEFV MUTATED 3 5 5 4
MEFV WILD-TYPE 62 205 67 127
'MEFV MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.94

Table S2615.  Gene #275: 'MEFV MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MEFV MUTATED 2 7 6
MEFV WILD-TYPE 129 131 155
'MEFV MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.97

Table S2616.  Gene #275: 'MEFV MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
MEFV MUTATED 1 0 2
MEFV WILD-TYPE 41 71 61
'MEFV MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.78

Table S2617.  Gene #275: 'MEFV MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
MEFV MUTATED 0 1 0 0 2
MEFV WILD-TYPE 39 31 43 30 30
'MEFV MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0721 (Fisher's exact test), Q value = 0.65

Table S2618.  Gene #275: 'MEFV MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MEFV MUTATED 1 7 7
MEFV WILD-TYPE 149 178 136
'MEFV MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S2619.  Gene #275: 'MEFV MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MEFV MUTATED 1 6 3 1 1 2 1
MEFV WILD-TYPE 71 103 87 43 48 44 67
'MEFV MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.73

Table S2620.  Gene #275: 'MEFV MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MEFV MUTATED 3 12 2
MEFV WILD-TYPE 172 199 88
'MEFV MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0177 (Fisher's exact test), Q value = 0.41

Table S2621.  Gene #275: 'MEFV MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MEFV MUTATED 2 6 1 8
MEFV WILD-TYPE 68 180 130 81

Figure S277.  Get High-res Image Gene #275: 'MEFV MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MEFV MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S2622.  Gene #275: 'MEFV MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MEFV MUTATED 5 8 2
MEFV WILD-TYPE 136 174 87
'MEFV MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.94

Table S2623.  Gene #275: 'MEFV MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MEFV MUTATED 1 11 3
MEFV WILD-TYPE 93 222 82
'GAN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S2624.  Gene #276: 'GAN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
GAN MUTATED 0 7 1 2
GAN WILD-TYPE 65 203 71 129
'GAN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S2625.  Gene #276: 'GAN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
GAN MUTATED 3 2 3
GAN WILD-TYPE 128 136 158
'GAN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S2626.  Gene #276: 'GAN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
GAN MUTATED 2 1 3
GAN WILD-TYPE 40 70 60
'GAN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S2627.  Gene #276: 'GAN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
GAN MUTATED 1 2 0 1 2
GAN WILD-TYPE 38 30 43 29 30
'GAN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S2628.  Gene #276: 'GAN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
GAN MUTATED 3 3 4
GAN WILD-TYPE 147 182 139
'GAN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S2629.  Gene #276: 'GAN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
GAN MUTATED 3 3 1 1 0 2 0
GAN WILD-TYPE 69 106 89 43 49 44 68
'GAN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S2630.  Gene #276: 'GAN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
GAN MUTATED 2 6 2
GAN WILD-TYPE 173 205 88
'GAN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S2631.  Gene #276: 'GAN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
GAN MUTATED 1 4 2 3
GAN WILD-TYPE 69 182 129 86
'GAN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2632.  Gene #276: 'GAN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
GAN MUTATED 3 3 1
GAN WILD-TYPE 138 179 88
'GAN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S2633.  Gene #276: 'GAN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
GAN MUTATED 1 4 2
GAN WILD-TYPE 93 229 83
'SQSTM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0633 (Fisher's exact test), Q value = 0.64

Table S2634.  Gene #277: 'SQSTM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SQSTM1 MUTATED 1 2 3 0
SQSTM1 WILD-TYPE 64 208 69 131
'SQSTM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2635.  Gene #277: 'SQSTM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SQSTM1 MUTATED 2 2 2
SQSTM1 WILD-TYPE 129 136 159
'SQSTM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S2636.  Gene #277: 'SQSTM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SQSTM1 MUTATED 1 1 2
SQSTM1 WILD-TYPE 41 70 61
'SQSTM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.93

Table S2637.  Gene #277: 'SQSTM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SQSTM1 MUTATED 1 1 0 2 0
SQSTM1 WILD-TYPE 38 31 43 28 32
'SQSTM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.73

Table S2638.  Gene #277: 'SQSTM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SQSTM1 MUTATED 0 2 4
SQSTM1 WILD-TYPE 150 183 139
'SQSTM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.95

Table S2639.  Gene #277: 'SQSTM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SQSTM1 MUTATED 0 1 1 1 1 2 0
SQSTM1 WILD-TYPE 72 108 89 43 48 44 68
'SQSTM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S2640.  Gene #277: 'SQSTM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SQSTM1 MUTATED 1 4 1
SQSTM1 WILD-TYPE 174 207 89
'SQSTM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.82

Table S2641.  Gene #277: 'SQSTM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SQSTM1 MUTATED 2 2 0 2
SQSTM1 WILD-TYPE 68 184 131 87
'SQSTM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S2642.  Gene #277: 'SQSTM1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SQSTM1 MUTATED 2 1 2
SQSTM1 WILD-TYPE 139 181 87
'SQSTM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S2643.  Gene #277: 'SQSTM1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SQSTM1 MUTATED 1 4 0
SQSTM1 WILD-TYPE 93 229 85
'DSN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S2644.  Gene #278: 'DSN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
DSN1 MUTATED 1 2 2 1
DSN1 WILD-TYPE 64 208 70 130
'DSN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0786 (Fisher's exact test), Q value = 0.67

Table S2645.  Gene #278: 'DSN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
DSN1 MUTATED 0 4 1
DSN1 WILD-TYPE 131 134 160
'DSN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.97

Table S2646.  Gene #278: 'DSN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
DSN1 MUTATED 1 0 2
DSN1 WILD-TYPE 41 71 61
'DSN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S2647.  Gene #278: 'DSN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
DSN1 MUTATED 0 0 2 0 1
DSN1 WILD-TYPE 39 32 41 30 31
'DSN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.88

Table S2648.  Gene #278: 'DSN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
DSN1 MUTATED 0 3 3
DSN1 WILD-TYPE 150 182 140
'DSN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0161 (Fisher's exact test), Q value = 0.4

Table S2649.  Gene #278: 'DSN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
DSN1 MUTATED 0 0 2 0 1 3 0
DSN1 WILD-TYPE 72 109 88 44 48 43 68

Figure S278.  Get High-res Image Gene #278: 'DSN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DSN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0928 (Fisher's exact test), Q value = 0.72

Table S2650.  Gene #278: 'DSN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
DSN1 MUTATED 0 5 1
DSN1 WILD-TYPE 175 206 89
'DSN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.8

Table S2651.  Gene #278: 'DSN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
DSN1 MUTATED 0 5 0 1
DSN1 WILD-TYPE 70 181 131 88
'DSN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2652.  Gene #278: 'DSN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
DSN1 MUTATED 1 2 1
DSN1 WILD-TYPE 140 180 88
'DSN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S2653.  Gene #278: 'DSN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
DSN1 MUTATED 0 4 0
DSN1 WILD-TYPE 94 229 85
'NAAA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2654.  Gene #279: 'NAAA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
NAAA MUTATED 1 1 1
NAAA WILD-TYPE 130 137 160
'NAAA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S2655.  Gene #279: 'NAAA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
NAAA MUTATED 0 2 1
NAAA WILD-TYPE 150 183 142
'NAAA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S2656.  Gene #279: 'NAAA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
NAAA MUTATED 0 2 0 1 0 0 0
NAAA WILD-TYPE 72 107 90 43 49 46 68
'NAAA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S2657.  Gene #279: 'NAAA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
NAAA MUTATED 1 1 1
NAAA WILD-TYPE 174 210 89
'NAAA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S2658.  Gene #279: 'NAAA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
NAAA MUTATED 0 1 2 0
NAAA WILD-TYPE 70 185 129 89
'NAAA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.88

Table S2659.  Gene #279: 'NAAA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
NAAA MUTATED 2 0 1
NAAA WILD-TYPE 139 182 88
'NAAA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S2660.  Gene #279: 'NAAA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
NAAA MUTATED 1 1 1
NAAA WILD-TYPE 93 232 84
'GART MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2661.  Gene #280: 'GART MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
GART MUTATED 0 3 1 2
GART WILD-TYPE 65 207 71 129
'GART MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S2662.  Gene #280: 'GART MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
GART MUTATED 1 2 3
GART WILD-TYPE 130 136 158
'GART MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.84

Table S2663.  Gene #280: 'GART MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
GART MUTATED 0 4 2
GART WILD-TYPE 150 181 141
'GART MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S2664.  Gene #280: 'GART MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
GART MUTATED 0 1 3 1 0 1 0
GART WILD-TYPE 72 108 87 43 49 45 68
'GART MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S2665.  Gene #280: 'GART MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
GART MUTATED 1 4 1
GART WILD-TYPE 174 207 89
'GART MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.97

Table S2666.  Gene #280: 'GART MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
GART MUTATED 1 3 0 2
GART WILD-TYPE 69 183 131 87
'GART MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S2667.  Gene #280: 'GART MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
GART MUTATED 1 3 1
GART WILD-TYPE 140 179 88
'GART MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S2668.  Gene #280: 'GART MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
GART MUTATED 1 4 0
GART WILD-TYPE 93 229 85
'TARBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S2669.  Gene #281: 'TARBP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
TARBP1 MUTATED 1 4 4 4
TARBP1 WILD-TYPE 64 206 68 127
'TARBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2670.  Gene #281: 'TARBP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
TARBP1 MUTATED 4 4 5
TARBP1 WILD-TYPE 127 134 156
'TARBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S2671.  Gene #281: 'TARBP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
TARBP1 MUTATED 2 1 2
TARBP1 WILD-TYPE 40 70 61
'TARBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S2672.  Gene #281: 'TARBP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
TARBP1 MUTATED 0 1 2 1 1
TARBP1 WILD-TYPE 39 31 41 29 31
'TARBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S2673.  Gene #281: 'TARBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
TARBP1 MUTATED 6 5 3
TARBP1 WILD-TYPE 144 180 140
'TARBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S2674.  Gene #281: 'TARBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
TARBP1 MUTATED 2 5 4 1 0 1 1
TARBP1 WILD-TYPE 70 104 86 43 49 45 67
'TARBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.77

Table S2675.  Gene #281: 'TARBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
TARBP1 MUTATED 9 4 1
TARBP1 WILD-TYPE 166 207 89
'TARBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S2676.  Gene #281: 'TARBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
TARBP1 MUTATED 2 5 6 1
TARBP1 WILD-TYPE 68 181 125 88
'TARBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S2677.  Gene #281: 'TARBP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
TARBP1 MUTATED 6 5 1
TARBP1 WILD-TYPE 135 177 88
'TARBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 0.97

Table S2678.  Gene #281: 'TARBP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
TARBP1 MUTATED 1 7 4
TARBP1 WILD-TYPE 93 226 81
'HLA-DQA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S2679.  Gene #282: 'HLA-DQA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
HLA-DQA2 MUTATED 0 3 0 0
HLA-DQA2 WILD-TYPE 65 207 72 131
'HLA-DQA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2680.  Gene #282: 'HLA-DQA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
HLA-DQA2 MUTATED 1 1 1
HLA-DQA2 WILD-TYPE 130 137 160
'HLA-DQA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2681.  Gene #282: 'HLA-DQA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
HLA-DQA2 MUTATED 1 1 1
HLA-DQA2 WILD-TYPE 149 184 142
'HLA-DQA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S2682.  Gene #282: 'HLA-DQA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
HLA-DQA2 MUTATED 1 1 0 0 1 0 0
HLA-DQA2 WILD-TYPE 71 108 90 44 48 46 68
'HLA-DQA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2683.  Gene #282: 'HLA-DQA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
HLA-DQA2 MUTATED 1 2 0
HLA-DQA2 WILD-TYPE 174 209 90
'HLA-DQA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S2684.  Gene #282: 'HLA-DQA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
HLA-DQA2 MUTATED 0 1 1 1
HLA-DQA2 WILD-TYPE 70 185 130 88
'HLA-DQA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2685.  Gene #282: 'HLA-DQA2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
HLA-DQA2 MUTATED 1 2 0
HLA-DQA2 WILD-TYPE 140 180 89
'HLA-DQA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S2686.  Gene #282: 'HLA-DQA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
HLA-DQA2 MUTATED 0 2 1
HLA-DQA2 WILD-TYPE 94 231 84
'AHDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00562 (Fisher's exact test), Q value = 0.26

Table S2687.  Gene #283: 'AHDC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
AHDC1 MUTATED 3 0 2 5
AHDC1 WILD-TYPE 62 210 70 126

Figure S279.  Get High-res Image Gene #283: 'AHDC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'AHDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.73

Table S2688.  Gene #283: 'AHDC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
AHDC1 MUTATED 0 3 5
AHDC1 WILD-TYPE 131 135 156
'AHDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S2689.  Gene #283: 'AHDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
AHDC1 MUTATED 2 5 3
AHDC1 WILD-TYPE 148 180 140
'AHDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S2690.  Gene #283: 'AHDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
AHDC1 MUTATED 1 4 3 0 0 1 1
AHDC1 WILD-TYPE 71 105 87 44 49 45 67
'AHDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S2691.  Gene #283: 'AHDC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
AHDC1 MUTATED 3 6 1
AHDC1 WILD-TYPE 172 205 89
'AHDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S2692.  Gene #283: 'AHDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
AHDC1 MUTATED 1 5 2 2
AHDC1 WILD-TYPE 69 181 129 87
'AHDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S2693.  Gene #283: 'AHDC1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
AHDC1 MUTATED 1 5 1
AHDC1 WILD-TYPE 140 177 88
'AHDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S2694.  Gene #283: 'AHDC1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
AHDC1 MUTATED 1 6 0
AHDC1 WILD-TYPE 93 227 85
'ARHGEF12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S2695.  Gene #284: 'ARHGEF12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ARHGEF12 MUTATED 2 9 4 6
ARHGEF12 WILD-TYPE 63 201 68 125
'ARHGEF12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0718 (Fisher's exact test), Q value = 0.65

Table S2696.  Gene #284: 'ARHGEF12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ARHGEF12 MUTATED 3 2 10
ARHGEF12 WILD-TYPE 128 136 151
'ARHGEF12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2697.  Gene #284: 'ARHGEF12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ARHGEF12 MUTATED 1 3 2
ARHGEF12 WILD-TYPE 41 68 61
'ARHGEF12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S2698.  Gene #284: 'ARHGEF12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ARHGEF12 MUTATED 1 1 3 0 1
ARHGEF12 WILD-TYPE 38 31 40 30 31
'ARHGEF12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.99

Table S2699.  Gene #284: 'ARHGEF12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ARHGEF12 MUTATED 4 11 6
ARHGEF12 WILD-TYPE 146 174 137
'ARHGEF12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.83

Table S2700.  Gene #284: 'ARHGEF12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ARHGEF12 MUTATED 2 6 5 0 5 0 3
ARHGEF12 WILD-TYPE 70 103 85 44 44 46 65
'ARHGEF12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0622 (Fisher's exact test), Q value = 0.63

Table S2701.  Gene #284: 'ARHGEF12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ARHGEF12 MUTATED 5 14 1
ARHGEF12 WILD-TYPE 170 197 89
'ARHGEF12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.89

Table S2702.  Gene #284: 'ARHGEF12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ARHGEF12 MUTATED 1 8 4 7
ARHGEF12 WILD-TYPE 69 178 127 82
'ARHGEF12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.82

Table S2703.  Gene #284: 'ARHGEF12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ARHGEF12 MUTATED 3 5 6
ARHGEF12 WILD-TYPE 138 177 83
'ARHGEF12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.73

Table S2704.  Gene #284: 'ARHGEF12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ARHGEF12 MUTATED 3 11 0
ARHGEF12 WILD-TYPE 91 222 85
'UHRF1BP1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00393 (Fisher's exact test), Q value = 0.23

Table S2705.  Gene #285: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
UHRF1BP1L MUTATED 3 1 5 7
UHRF1BP1L WILD-TYPE 62 209 67 124

Figure S280.  Get High-res Image Gene #285: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'UHRF1BP1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S2706.  Gene #285: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
UHRF1BP1L MUTATED 2 6 5
UHRF1BP1L WILD-TYPE 129 132 156
'UHRF1BP1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.97

Table S2707.  Gene #285: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
UHRF1BP1L MUTATED 1 0 2
UHRF1BP1L WILD-TYPE 41 71 61
'UHRF1BP1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S2708.  Gene #285: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
UHRF1BP1L MUTATED 1 0 1 1 0
UHRF1BP1L WILD-TYPE 38 32 42 29 32
'UHRF1BP1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.83

Table S2709.  Gene #285: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
UHRF1BP1L MUTATED 2 7 7
UHRF1BP1L WILD-TYPE 148 178 136
'UHRF1BP1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.83

Table S2710.  Gene #285: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
UHRF1BP1L MUTATED 0 4 7 1 2 1 1
UHRF1BP1L WILD-TYPE 72 105 83 43 47 45 67
'UHRF1BP1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 0.65

Table S2711.  Gene #285: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
UHRF1BP1L MUTATED 2 11 2
UHRF1BP1L WILD-TYPE 173 200 88
'UHRF1BP1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.93

Table S2712.  Gene #285: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
UHRF1BP1L MUTATED 0 8 3 4
UHRF1BP1L WILD-TYPE 70 178 128 85
'UHRF1BP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S2713.  Gene #285: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
UHRF1BP1L MUTATED 4 7 1
UHRF1BP1L WILD-TYPE 137 175 88
'UHRF1BP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S2714.  Gene #285: 'UHRF1BP1L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
UHRF1BP1L MUTATED 2 8 2
UHRF1BP1L WILD-TYPE 92 225 83
'HERC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.96

Table S2715.  Gene #286: 'HERC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
HERC3 MUTATED 0 3 3 2
HERC3 WILD-TYPE 65 207 69 129
'HERC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2716.  Gene #286: 'HERC3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
HERC3 MUTATED 2 2 3
HERC3 WILD-TYPE 129 136 158
'HERC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S2717.  Gene #286: 'HERC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
HERC3 MUTATED 1 4 3
HERC3 WILD-TYPE 149 181 140
'HERC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.77

Table S2718.  Gene #286: 'HERC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
HERC3 MUTATED 0 1 1 1 0 3 2
HERC3 WILD-TYPE 72 108 89 43 49 43 66
'HERC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.88

Table S2719.  Gene #286: 'HERC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
HERC3 MUTATED 1 6 1
HERC3 WILD-TYPE 174 205 89
'HERC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S2720.  Gene #286: 'HERC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
HERC3 MUTATED 1 4 1 2
HERC3 WILD-TYPE 69 182 130 87
'HERC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S2721.  Gene #286: 'HERC3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
HERC3 MUTATED 2 4 1
HERC3 WILD-TYPE 139 178 88
'HERC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S2722.  Gene #286: 'HERC3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
HERC3 MUTATED 1 6 0
HERC3 WILD-TYPE 93 227 85
'GALNT14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.78

Table S2723.  Gene #287: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
GALNT14 MUTATED 1 6 3 10
GALNT14 WILD-TYPE 64 204 69 121
'GALNT14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S2724.  Gene #287: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
GALNT14 MUTATED 4 3 8
GALNT14 WILD-TYPE 127 135 153
'GALNT14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S2725.  Gene #287: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
GALNT14 MUTATED 1 3 3
GALNT14 WILD-TYPE 41 68 60
'GALNT14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S2726.  Gene #287: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
GALNT14 MUTATED 0 1 3 2 1
GALNT14 WILD-TYPE 39 31 40 28 31
'GALNT14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.062 (Fisher's exact test), Q value = 0.63

Table S2727.  Gene #287: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
GALNT14 MUTATED 4 13 3
GALNT14 WILD-TYPE 146 172 140
'GALNT14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.986 (Fisher's exact test), Q value = 1

Table S2728.  Gene #287: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
GALNT14 MUTATED 2 5 5 1 2 2 3
GALNT14 WILD-TYPE 70 104 85 43 47 44 65
'GALNT14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0837 (Fisher's exact test), Q value = 0.68

Table S2729.  Gene #287: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
GALNT14 MUTATED 3 13 3
GALNT14 WILD-TYPE 172 198 87
'GALNT14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.92

Table S2730.  Gene #287: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
GALNT14 MUTATED 1 9 3 6
GALNT14 WILD-TYPE 69 177 128 83
'GALNT14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S2731.  Gene #287: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
GALNT14 MUTATED 3 9 3
GALNT14 WILD-TYPE 138 173 86
'GALNT14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.84

Table S2732.  Gene #287: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
GALNT14 MUTATED 1 12 2
GALNT14 WILD-TYPE 93 221 83
'FLT4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0694 (Fisher's exact test), Q value = 0.65

Table S2733.  Gene #288: 'FLT4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
FLT4 MUTATED 1 4 4 9
FLT4 WILD-TYPE 64 206 68 122
'FLT4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S2734.  Gene #288: 'FLT4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
FLT4 MUTATED 3 4 7
FLT4 WILD-TYPE 128 134 154
'FLT4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2735.  Gene #288: 'FLT4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
FLT4 MUTATED 1 3 2
FLT4 WILD-TYPE 41 68 61
'FLT4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.84

Table S2736.  Gene #288: 'FLT4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
FLT4 MUTATED 1 0 4 0 1
FLT4 WILD-TYPE 38 32 39 30 31
'FLT4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S2737.  Gene #288: 'FLT4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
FLT4 MUTATED 4 10 4
FLT4 WILD-TYPE 146 175 139
'FLT4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S2738.  Gene #288: 'FLT4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
FLT4 MUTATED 1 6 5 1 0 1 4
FLT4 WILD-TYPE 71 103 85 43 49 45 64
'FLT4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S2739.  Gene #288: 'FLT4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
FLT4 MUTATED 4 10 4
FLT4 WILD-TYPE 171 201 86
'FLT4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S2740.  Gene #288: 'FLT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
FLT4 MUTATED 2 6 4 6
FLT4 WILD-TYPE 68 180 127 83
'FLT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S2741.  Gene #288: 'FLT4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
FLT4 MUTATED 4 5 5
FLT4 WILD-TYPE 137 177 84
'FLT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.9

Table S2742.  Gene #288: 'FLT4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
FLT4 MUTATED 1 11 2
FLT4 WILD-TYPE 93 222 83
'ACBD5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S2743.  Gene #289: 'ACBD5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ACBD5 MUTATED 3 4 1 3
ACBD5 WILD-TYPE 62 206 71 128
'ACBD5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2744.  Gene #289: 'ACBD5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ACBD5 MUTATED 3 3 4
ACBD5 WILD-TYPE 128 135 157
'ACBD5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S2745.  Gene #289: 'ACBD5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ACBD5 MUTATED 3 6 2
ACBD5 WILD-TYPE 147 179 141
'ACBD5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S2746.  Gene #289: 'ACBD5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ACBD5 MUTATED 2 4 3 0 0 1 1
ACBD5 WILD-TYPE 70 105 87 44 49 45 67
'ACBD5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S2747.  Gene #289: 'ACBD5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ACBD5 MUTATED 3 7 1
ACBD5 WILD-TYPE 172 204 89
'ACBD5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S2748.  Gene #289: 'ACBD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ACBD5 MUTATED 1 5 2 3
ACBD5 WILD-TYPE 69 181 129 86
'ACBD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S2749.  Gene #289: 'ACBD5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ACBD5 MUTATED 3 6 1
ACBD5 WILD-TYPE 138 176 88
'ACBD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S2750.  Gene #289: 'ACBD5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ACBD5 MUTATED 2 7 1
ACBD5 WILD-TYPE 92 226 84
'CARD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0556 (Fisher's exact test), Q value = 0.62

Table S2751.  Gene #290: 'CARD6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CARD6 MUTATED 5 3 3 3
CARD6 WILD-TYPE 60 207 69 128
'CARD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00851 (Fisher's exact test), Q value = 0.33

Table S2752.  Gene #290: 'CARD6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CARD6 MUTATED 1 10 3
CARD6 WILD-TYPE 130 128 158

Figure S281.  Get High-res Image Gene #290: 'CARD6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CARD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.37

Table S2753.  Gene #290: 'CARD6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CARD6 MUTATED 0 7 7
CARD6 WILD-TYPE 150 178 136

Figure S282.  Get High-res Image Gene #290: 'CARD6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CARD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00097 (Fisher's exact test), Q value = 0.096

Table S2754.  Gene #290: 'CARD6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CARD6 MUTATED 1 0 8 0 3 2 0
CARD6 WILD-TYPE 71 109 82 44 46 44 68

Figure S283.  Get High-res Image Gene #290: 'CARD6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CARD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.4

Table S2755.  Gene #290: 'CARD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CARD6 MUTATED 1 11 2
CARD6 WILD-TYPE 174 200 88

Figure S284.  Get High-res Image Gene #290: 'CARD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CARD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.025

Table S2756.  Gene #290: 'CARD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CARD6 MUTATED 0 5 0 9
CARD6 WILD-TYPE 70 181 131 80

Figure S285.  Get High-res Image Gene #290: 'CARD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CARD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.85

Table S2757.  Gene #290: 'CARD6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CARD6 MUTATED 2 7 5
CARD6 WILD-TYPE 139 175 84
'CARD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00262 (Fisher's exact test), Q value = 0.19

Table S2758.  Gene #290: 'CARD6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CARD6 MUTATED 0 14 0
CARD6 WILD-TYPE 94 219 85

Figure S286.  Get High-res Image Gene #290: 'CARD6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ANKRD44 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S2759.  Gene #291: 'ANKRD44 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ANKRD44 MUTATED 1 7 4 5
ANKRD44 WILD-TYPE 64 203 68 126
'ANKRD44 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S2760.  Gene #291: 'ANKRD44 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ANKRD44 MUTATED 5 4 8
ANKRD44 WILD-TYPE 126 134 153
'ANKRD44 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S2761.  Gene #291: 'ANKRD44 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ANKRD44 MUTATED 1 3 1
ANKRD44 WILD-TYPE 41 68 62
'ANKRD44 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S2762.  Gene #291: 'ANKRD44 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ANKRD44 MUTATED 1 1 2 1 0
ANKRD44 WILD-TYPE 38 31 41 29 32
'ANKRD44 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S2763.  Gene #291: 'ANKRD44 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ANKRD44 MUTATED 5 9 3
ANKRD44 WILD-TYPE 145 176 140
'ANKRD44 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S2764.  Gene #291: 'ANKRD44 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ANKRD44 MUTATED 1 7 4 2 0 1 2
ANKRD44 WILD-TYPE 71 102 86 42 49 45 66
'ANKRD44 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.97

Table S2765.  Gene #291: 'ANKRD44 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ANKRD44 MUTATED 7 10 1
ANKRD44 WILD-TYPE 168 201 89
'ANKRD44 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.946 (Fisher's exact test), Q value = 1

Table S2766.  Gene #291: 'ANKRD44 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ANKRD44 MUTATED 3 8 4 3
ANKRD44 WILD-TYPE 67 178 127 86
'ANKRD44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0793 (Fisher's exact test), Q value = 0.68

Table S2767.  Gene #291: 'ANKRD44 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ANKRD44 MUTATED 9 3 4
ANKRD44 WILD-TYPE 132 179 85
'ANKRD44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S2768.  Gene #291: 'ANKRD44 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ANKRD44 MUTATED 3 11 2
ANKRD44 WILD-TYPE 91 222 83
'DPEP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S2769.  Gene #292: 'DPEP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
DPEP2 MUTATED 1 2 2 2
DPEP2 WILD-TYPE 64 208 70 129
'DPEP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2770.  Gene #292: 'DPEP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
DPEP2 MUTATED 2 2 2
DPEP2 WILD-TYPE 129 136 159
'DPEP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S2771.  Gene #292: 'DPEP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
DPEP2 MUTATED 2 2 3
DPEP2 WILD-TYPE 148 183 140
'DPEP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.95

Table S2772.  Gene #292: 'DPEP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
DPEP2 MUTATED 0 1 4 0 0 1 1
DPEP2 WILD-TYPE 72 108 86 44 49 45 67
'DPEP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S2773.  Gene #292: 'DPEP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
DPEP2 MUTATED 2 4 1
DPEP2 WILD-TYPE 173 207 89
'DPEP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S2774.  Gene #292: 'DPEP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
DPEP2 MUTATED 0 2 2 3
DPEP2 WILD-TYPE 70 184 129 86
'DPEP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S2775.  Gene #292: 'DPEP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
DPEP2 MUTATED 1 4 1
DPEP2 WILD-TYPE 140 178 88
'DPEP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2776.  Gene #292: 'DPEP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
DPEP2 MUTATED 1 4 1
DPEP2 WILD-TYPE 93 229 84
'TCEAL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S2777.  Gene #293: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
TCEAL5 MUTATED 1 4 3 5
TCEAL5 WILD-TYPE 64 206 69 126
'TCEAL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S2778.  Gene #293: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
TCEAL5 MUTATED 4 5 3
TCEAL5 WILD-TYPE 127 133 158
'TCEAL5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S2779.  Gene #293: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
TCEAL5 MUTATED 0 2 2
TCEAL5 WILD-TYPE 42 69 61
'TCEAL5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S2780.  Gene #293: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
TCEAL5 MUTATED 1 0 1 1 1
TCEAL5 WILD-TYPE 38 32 42 29 31
'TCEAL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S2781.  Gene #293: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
TCEAL5 MUTATED 4 4 4
TCEAL5 WILD-TYPE 146 181 139
'TCEAL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S2782.  Gene #293: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
TCEAL5 MUTATED 3 3 2 1 2 0 1
TCEAL5 WILD-TYPE 69 106 88 43 47 46 67
'TCEAL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S2783.  Gene #293: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
TCEAL5 MUTATED 4 6 3
TCEAL5 WILD-TYPE 171 205 87
'TCEAL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S2784.  Gene #293: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
TCEAL5 MUTATED 1 4 4 4
TCEAL5 WILD-TYPE 69 182 127 85
'TCEAL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S2785.  Gene #293: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
TCEAL5 MUTATED 5 4 3
TCEAL5 WILD-TYPE 136 178 86
'TCEAL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S2786.  Gene #293: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
TCEAL5 MUTATED 2 9 1
TCEAL5 WILD-TYPE 92 224 84
'PTPRH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.48

Table S2787.  Gene #294: 'PTPRH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PTPRH MUTATED 4 5 8 5
PTPRH WILD-TYPE 61 205 64 126

Figure S287.  Get High-res Image Gene #294: 'PTPRH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTPRH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.82

Table S2788.  Gene #294: 'PTPRH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PTPRH MUTATED 3 10 8
PTPRH WILD-TYPE 128 128 153
'PTPRH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0543 (Fisher's exact test), Q value = 0.62

Table S2789.  Gene #294: 'PTPRH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
PTPRH MUTATED 0 1 5
PTPRH WILD-TYPE 42 70 58
'PTPRH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.97

Table S2790.  Gene #294: 'PTPRH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
PTPRH MUTATED 1 1 1 3 0
PTPRH WILD-TYPE 38 31 42 27 32
'PTPRH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.96

Table S2791.  Gene #294: 'PTPRH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PTPRH MUTATED 4 9 9
PTPRH WILD-TYPE 146 176 134
'PTPRH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.05 (Fisher's exact test), Q value = 0.62

Table S2792.  Gene #294: 'PTPRH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PTPRH MUTATED 0 7 3 1 2 6 3
PTPRH WILD-TYPE 72 102 87 43 47 40 65

Figure S288.  Get High-res Image Gene #294: 'PTPRH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTPRH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.85

Table S2793.  Gene #294: 'PTPRH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PTPRH MUTATED 5 14 3
PTPRH WILD-TYPE 170 197 87
'PTPRH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.83

Table S2794.  Gene #294: 'PTPRH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PTPRH MUTATED 4 12 2 4
PTPRH WILD-TYPE 66 174 129 85
'PTPRH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S2795.  Gene #294: 'PTPRH MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PTPRH MUTATED 6 11 2
PTPRH WILD-TYPE 135 171 87
'PTPRH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S2796.  Gene #294: 'PTPRH MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PTPRH MUTATED 4 13 2
PTPRH WILD-TYPE 90 220 83
'LMTK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S2797.  Gene #295: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
LMTK3 MUTATED 0 5 2 1
LMTK3 WILD-TYPE 65 205 70 130
'LMTK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S2798.  Gene #295: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
LMTK3 MUTATED 3 3 1
LMTK3 WILD-TYPE 128 135 160
'LMTK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S2799.  Gene #295: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
LMTK3 MUTATED 1 4 3
LMTK3 WILD-TYPE 149 181 140
'LMTK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0354 (Fisher's exact test), Q value = 0.56

Table S2800.  Gene #295: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
LMTK3 MUTATED 0 1 1 0 1 4 1
LMTK3 WILD-TYPE 72 108 89 44 48 42 67

Figure S289.  Get High-res Image Gene #295: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LMTK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S2801.  Gene #295: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
LMTK3 MUTATED 2 5 1
LMTK3 WILD-TYPE 173 206 89
'LMTK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S2802.  Gene #295: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
LMTK3 MUTATED 1 5 1 1
LMTK3 WILD-TYPE 69 181 130 88
'LMTK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S2803.  Gene #295: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
LMTK3 MUTATED 2 4 1
LMTK3 WILD-TYPE 139 178 88
'LMTK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.95

Table S2804.  Gene #295: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
LMTK3 MUTATED 0 6 1
LMTK3 WILD-TYPE 94 227 84
'ADAR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.85

Table S2805.  Gene #296: 'ADAR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ADAR MUTATED 2 3 3 1
ADAR WILD-TYPE 63 207 69 130
'ADAR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2806.  Gene #296: 'ADAR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ADAR MUTATED 2 2 3
ADAR WILD-TYPE 129 136 158
'ADAR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S2807.  Gene #296: 'ADAR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ADAR MUTATED 0 1 2
ADAR WILD-TYPE 42 70 61
'ADAR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S2808.  Gene #296: 'ADAR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ADAR MUTATED 0 0 2 1 0
ADAR WILD-TYPE 39 32 41 29 32
'ADAR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.88

Table S2809.  Gene #296: 'ADAR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ADAR MUTATED 1 6 2
ADAR WILD-TYPE 149 179 141
'ADAR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S2810.  Gene #296: 'ADAR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ADAR MUTATED 2 3 3 0 1 0 0
ADAR WILD-TYPE 70 106 87 44 48 46 68
'ADAR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.77

Table S2811.  Gene #296: 'ADAR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ADAR MUTATED 1 7 1
ADAR WILD-TYPE 174 204 89
'ADAR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.83

Table S2812.  Gene #296: 'ADAR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ADAR MUTATED 0 4 1 4
ADAR WILD-TYPE 70 182 130 85
'ADAR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S2813.  Gene #296: 'ADAR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ADAR MUTATED 2 3 2
ADAR WILD-TYPE 139 179 87
'ADAR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0935 (Fisher's exact test), Q value = 0.72

Table S2814.  Gene #296: 'ADAR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ADAR MUTATED 0 7 0
ADAR WILD-TYPE 94 226 85
'CLCN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S2815.  Gene #297: 'CLCN5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CLCN5 MUTATED 1 5 1 2
CLCN5 WILD-TYPE 64 205 71 129
'CLCN5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0407 (Fisher's exact test), Q value = 0.58

Table S2816.  Gene #297: 'CLCN5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CLCN5 MUTATED 4 4 0
CLCN5 WILD-TYPE 127 134 161

Figure S290.  Get High-res Image Gene #297: 'CLCN5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CLCN5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.74

Table S2817.  Gene #297: 'CLCN5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
CLCN5 MUTATED 2 0 1
CLCN5 WILD-TYPE 40 71 62
'CLCN5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.78

Table S2818.  Gene #297: 'CLCN5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
CLCN5 MUTATED 0 1 0 0 2
CLCN5 WILD-TYPE 39 31 43 30 30
'CLCN5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.83

Table S2819.  Gene #297: 'CLCN5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CLCN5 MUTATED 4 1 4
CLCN5 WILD-TYPE 146 184 139
'CLCN5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.89

Table S2820.  Gene #297: 'CLCN5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CLCN5 MUTATED 2 0 3 2 0 1 1
CLCN5 WILD-TYPE 70 109 87 42 49 45 67
'CLCN5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.79

Table S2821.  Gene #297: 'CLCN5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CLCN5 MUTATED 6 3 0
CLCN5 WILD-TYPE 169 208 90
'CLCN5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S2822.  Gene #297: 'CLCN5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CLCN5 MUTATED 1 3 4 1
CLCN5 WILD-TYPE 69 183 127 88
'CLCN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S2823.  Gene #297: 'CLCN5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CLCN5 MUTATED 1 4 1
CLCN5 WILD-TYPE 140 178 88
'CLCN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S2824.  Gene #297: 'CLCN5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CLCN5 MUTATED 2 4 0
CLCN5 WILD-TYPE 92 229 85
'MECP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.73

Table S2825.  Gene #298: 'MECP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MECP2 MUTATED 0 4 4 1
MECP2 WILD-TYPE 65 206 68 130
'MECP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S2826.  Gene #298: 'MECP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MECP2 MUTATED 2 3 2
MECP2 WILD-TYPE 129 135 159
'MECP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2827.  Gene #298: 'MECP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MECP2 MUTATED 3 3 3
MECP2 WILD-TYPE 147 182 140
'MECP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S2828.  Gene #298: 'MECP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MECP2 MUTATED 1 1 4 0 0 1 2
MECP2 WILD-TYPE 71 108 86 44 49 45 66
'MECP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2829.  Gene #298: 'MECP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MECP2 MUTATED 3 4 1
MECP2 WILD-TYPE 172 207 89
'MECP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.73

Table S2830.  Gene #298: 'MECP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MECP2 MUTATED 1 1 2 4
MECP2 WILD-TYPE 69 185 129 85
'MECP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S2831.  Gene #298: 'MECP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MECP2 MUTATED 2 4 1
MECP2 WILD-TYPE 139 178 88
'MECP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S2832.  Gene #298: 'MECP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MECP2 MUTATED 2 3 2
MECP2 WILD-TYPE 92 230 83
'IL22RA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.95

Table S2833.  Gene #299: 'IL22RA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
IL22RA2 MUTATED 1 1 2 2
IL22RA2 WILD-TYPE 64 209 70 129
'IL22RA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S2834.  Gene #299: 'IL22RA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
IL22RA2 MUTATED 1 2 3
IL22RA2 WILD-TYPE 130 136 158
'IL22RA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0662 (Fisher's exact test), Q value = 0.65

Table S2835.  Gene #299: 'IL22RA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
IL22RA2 MUTATED 0 5 1
IL22RA2 WILD-TYPE 150 180 142
'IL22RA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S2836.  Gene #299: 'IL22RA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
IL22RA2 MUTATED 0 3 2 0 1 0 0
IL22RA2 WILD-TYPE 72 106 88 44 48 46 68
'IL22RA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0294 (Fisher's exact test), Q value = 0.53

Table S2837.  Gene #299: 'IL22RA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
IL22RA2 MUTATED 0 6 0
IL22RA2 WILD-TYPE 175 205 90

Figure S291.  Get High-res Image Gene #299: 'IL22RA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'IL22RA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.84

Table S2838.  Gene #299: 'IL22RA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
IL22RA2 MUTATED 0 4 0 2
IL22RA2 WILD-TYPE 70 182 131 87
'IL22RA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.96

Table S2839.  Gene #299: 'IL22RA2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
IL22RA2 MUTATED 1 2 3
IL22RA2 WILD-TYPE 140 180 86
'IL22RA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.78

Table S2840.  Gene #299: 'IL22RA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
IL22RA2 MUTATED 0 6 0
IL22RA2 WILD-TYPE 94 227 85
'MYO1H MUTATION STATUS' versus 'CN_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.73

Table S2841.  Gene #300: 'MYO1H MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MYO1H MUTATED 1 4 5 2
MYO1H WILD-TYPE 64 206 67 129
'MYO1H MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S2842.  Gene #300: 'MYO1H MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MYO1H MUTATED 2 4 3
MYO1H WILD-TYPE 129 134 158
'MYO1H MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.85

Table S2843.  Gene #300: 'MYO1H MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
MYO1H MUTATED 2 3 0
MYO1H WILD-TYPE 40 68 63
'MYO1H MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S2844.  Gene #300: 'MYO1H MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
MYO1H MUTATED 2 1 2 0 0
MYO1H WILD-TYPE 37 31 41 30 32
'MYO1H MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.84

Table S2845.  Gene #300: 'MYO1H MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MYO1H MUTATED 1 6 5
MYO1H WILD-TYPE 149 179 138
'MYO1H MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.77

Table S2846.  Gene #300: 'MYO1H MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MYO1H MUTATED 1 4 1 1 1 4 0
MYO1H WILD-TYPE 71 105 89 43 48 42 68
'MYO1H MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S2847.  Gene #300: 'MYO1H MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MYO1H MUTATED 3 7 1
MYO1H WILD-TYPE 172 204 89
'MYO1H MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S2848.  Gene #300: 'MYO1H MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MYO1H MUTATED 2 6 1 2
MYO1H WILD-TYPE 68 180 130 87
'MYO1H MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S2849.  Gene #300: 'MYO1H MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MYO1H MUTATED 3 5 1
MYO1H WILD-TYPE 138 177 88
'MYO1H MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S2850.  Gene #300: 'MYO1H MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MYO1H MUTATED 1 7 1
MYO1H WILD-TYPE 93 226 84
'SERGEF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0969 (Fisher's exact test), Q value = 0.73

Table S2851.  Gene #301: 'SERGEF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SERGEF MUTATED 0 2 1 6
SERGEF WILD-TYPE 65 208 71 125
'SERGEF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.85

Table S2852.  Gene #301: 'SERGEF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SERGEF MUTATED 1 2 6
SERGEF WILD-TYPE 130 136 155
'SERGEF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S2853.  Gene #301: 'SERGEF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SERGEF MUTATED 3 4 2
SERGEF WILD-TYPE 147 181 141
'SERGEF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S2854.  Gene #301: 'SERGEF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SERGEF MUTATED 1 4 1 0 1 1 1
SERGEF WILD-TYPE 71 105 89 44 48 45 67
'SERGEF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S2855.  Gene #301: 'SERGEF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SERGEF MUTATED 2 5 2
SERGEF WILD-TYPE 173 206 88
'SERGEF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S2856.  Gene #301: 'SERGEF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SERGEF MUTATED 0 4 3 2
SERGEF WILD-TYPE 70 182 128 87
'SERGEF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.88

Table S2857.  Gene #301: 'SERGEF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SERGEF MUTATED 3 6 0
SERGEF WILD-TYPE 138 176 89
'SERGEF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.97

Table S2858.  Gene #301: 'SERGEF MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SERGEF MUTATED 3 6 0
SERGEF WILD-TYPE 91 227 85
'TRIP13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S2859.  Gene #302: 'TRIP13 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
TRIP13 MUTATED 1 5 1 4
TRIP13 WILD-TYPE 64 205 71 127
'TRIP13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S2860.  Gene #302: 'TRIP13 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
TRIP13 MUTATED 3 2 5
TRIP13 WILD-TYPE 128 136 156
'TRIP13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S2861.  Gene #302: 'TRIP13 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
TRIP13 MUTATED 1 2 4
TRIP13 WILD-TYPE 41 69 59
'TRIP13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S2862.  Gene #302: 'TRIP13 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
TRIP13 MUTATED 1 1 1 2 2
TRIP13 WILD-TYPE 38 31 42 28 30
'TRIP13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S2863.  Gene #302: 'TRIP13 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
TRIP13 MUTATED 2 6 3
TRIP13 WILD-TYPE 148 179 140
'TRIP13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S2864.  Gene #302: 'TRIP13 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
TRIP13 MUTATED 1 5 1 1 0 2 1
TRIP13 WILD-TYPE 71 104 89 43 49 44 67
'TRIP13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.97

Table S2865.  Gene #302: 'TRIP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
TRIP13 MUTATED 3 4 4
TRIP13 WILD-TYPE 172 207 86
'TRIP13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S2866.  Gene #302: 'TRIP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
TRIP13 MUTATED 1 6 3 1
TRIP13 WILD-TYPE 69 180 128 88
'TRIP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S2867.  Gene #302: 'TRIP13 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
TRIP13 MUTATED 4 3 3
TRIP13 WILD-TYPE 137 179 86
'TRIP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.84

Table S2868.  Gene #302: 'TRIP13 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
TRIP13 MUTATED 0 7 3
TRIP13 WILD-TYPE 94 226 82
'GPR174 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.83

Table S2869.  Gene #303: 'GPR174 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
GPR174 MUTATED 1 4 4 7
GPR174 WILD-TYPE 64 206 68 124
'GPR174 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.97

Table S2870.  Gene #303: 'GPR174 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
GPR174 MUTATED 2 6 7
GPR174 WILD-TYPE 129 132 154
'GPR174 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2871.  Gene #303: 'GPR174 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
GPR174 MUTATED 2 3 2
GPR174 WILD-TYPE 40 68 61
'GPR174 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S2872.  Gene #303: 'GPR174 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
GPR174 MUTATED 2 0 3 0 2
GPR174 WILD-TYPE 37 32 40 30 30
'GPR174 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S2873.  Gene #303: 'GPR174 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
GPR174 MUTATED 4 9 3
GPR174 WILD-TYPE 146 176 140
'GPR174 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.98

Table S2874.  Gene #303: 'GPR174 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
GPR174 MUTATED 2 4 7 1 1 0 1
GPR174 WILD-TYPE 70 105 83 43 48 46 67
'GPR174 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.8

Table S2875.  Gene #303: 'GPR174 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
GPR174 MUTATED 3 11 2
GPR174 WILD-TYPE 172 200 88
'GPR174 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0475 (Fisher's exact test), Q value = 0.62

Table S2876.  Gene #303: 'GPR174 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
GPR174 MUTATED 0 5 4 7
GPR174 WILD-TYPE 70 181 127 82

Figure S292.  Get High-res Image Gene #303: 'GPR174 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GPR174 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0537 (Fisher's exact test), Q value = 0.62

Table S2877.  Gene #303: 'GPR174 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
GPR174 MUTATED 5 10 0
GPR174 WILD-TYPE 136 172 89
'GPR174 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S2878.  Gene #303: 'GPR174 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
GPR174 MUTATED 2 11 2
GPR174 WILD-TYPE 92 222 83
'VARS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.96

Table S2879.  Gene #304: 'VARS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
VARS MUTATED 0 3 1 5
VARS WILD-TYPE 65 207 71 126
'VARS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S2880.  Gene #304: 'VARS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
VARS MUTATED 1 4 2
VARS WILD-TYPE 130 134 159
'VARS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S2881.  Gene #304: 'VARS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
VARS MUTATED 1 4 2
VARS WILD-TYPE 41 67 61
'VARS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S2882.  Gene #304: 'VARS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
VARS MUTATED 2 1 3 1 0
VARS WILD-TYPE 37 31 40 29 32
'VARS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.73

Table S2883.  Gene #304: 'VARS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
VARS MUTATED 0 5 4
VARS WILD-TYPE 150 180 139
'VARS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S2884.  Gene #304: 'VARS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
VARS MUTATED 0 3 2 1 1 2 0
VARS WILD-TYPE 72 106 88 43 48 44 68
'VARS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S2885.  Gene #304: 'VARS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
VARS MUTATED 3 5 1
VARS WILD-TYPE 172 206 89
'VARS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.93

Table S2886.  Gene #304: 'VARS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
VARS MUTATED 1 3 1 4
VARS WILD-TYPE 69 183 130 85
'VARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S2887.  Gene #304: 'VARS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
VARS MUTATED 2 4 1
VARS WILD-TYPE 139 178 88
'VARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S2888.  Gene #304: 'VARS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
VARS MUTATED 1 6 0
VARS WILD-TYPE 93 227 85
'CSNK1E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S2889.  Gene #305: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CSNK1E MUTATED 1 2 0 3
CSNK1E WILD-TYPE 64 208 72 128
'CSNK1E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00441 (Fisher's exact test), Q value = 0.24

Table S2890.  Gene #305: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CSNK1E MUTATED 0 0 6
CSNK1E WILD-TYPE 131 138 155

Figure S293.  Get High-res Image Gene #305: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CSNK1E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S2891.  Gene #305: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
CSNK1E MUTATED 0 2 1
CSNK1E WILD-TYPE 42 69 62
'CSNK1E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2892.  Gene #305: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
CSNK1E MUTATED 1 0 1 0 1
CSNK1E WILD-TYPE 38 32 42 30 31
'CSNK1E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0046 (Fisher's exact test), Q value = 0.24

Table S2893.  Gene #305: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CSNK1E MUTATED 0 6 0
CSNK1E WILD-TYPE 150 179 143

Figure S294.  Get High-res Image Gene #305: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CSNK1E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.96

Table S2894.  Gene #305: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CSNK1E MUTATED 0 4 2 0 0 0 0
CSNK1E WILD-TYPE 72 105 88 44 49 46 68
'CSNK1E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S2895.  Gene #305: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CSNK1E MUTATED 1 4 1
CSNK1E WILD-TYPE 174 207 89
'CSNK1E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S2896.  Gene #305: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CSNK1E MUTATED 0 4 1 1
CSNK1E WILD-TYPE 70 182 130 88
'CSNK1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.88

Table S2897.  Gene #305: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CSNK1E MUTATED 0 4 1
CSNK1E WILD-TYPE 141 178 88
'CSNK1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S2898.  Gene #305: 'CSNK1E MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CSNK1E MUTATED 0 4 1
CSNK1E WILD-TYPE 94 229 84
'ANKRD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S2899.  Gene #306: 'ANKRD7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ANKRD7 MUTATED 2 3 2 3
ANKRD7 WILD-TYPE 63 207 70 128
'ANKRD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0211 (Fisher's exact test), Q value = 0.46

Table S2900.  Gene #306: 'ANKRD7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ANKRD7 MUTATED 0 6 2
ANKRD7 WILD-TYPE 131 132 159

Figure S295.  Get High-res Image Gene #306: 'ANKRD7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ANKRD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S2901.  Gene #306: 'ANKRD7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ANKRD7 MUTATED 0 2 3
ANKRD7 WILD-TYPE 42 69 60
'ANKRD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S2902.  Gene #306: 'ANKRD7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ANKRD7 MUTATED 1 0 2 1 1
ANKRD7 WILD-TYPE 38 32 41 29 31
'ANKRD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.78

Table S2903.  Gene #306: 'ANKRD7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ANKRD7 MUTATED 1 7 2
ANKRD7 WILD-TYPE 149 178 141
'ANKRD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.85

Table S2904.  Gene #306: 'ANKRD7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ANKRD7 MUTATED 0 3 4 1 0 2 0
ANKRD7 WILD-TYPE 72 106 86 43 49 44 68
'ANKRD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 0.5

Table S2905.  Gene #306: 'ANKRD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ANKRD7 MUTATED 0 7 2
ANKRD7 WILD-TYPE 175 204 88

Figure S296.  Get High-res Image Gene #306: 'ANKRD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ANKRD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0379 (Fisher's exact test), Q value = 0.58

Table S2906.  Gene #306: 'ANKRD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ANKRD7 MUTATED 0 5 0 4
ANKRD7 WILD-TYPE 70 181 131 85

Figure S297.  Get High-res Image Gene #306: 'ANKRD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ANKRD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S2907.  Gene #306: 'ANKRD7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ANKRD7 MUTATED 2 4 2
ANKRD7 WILD-TYPE 139 178 87
'ANKRD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S2908.  Gene #306: 'ANKRD7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ANKRD7 MUTATED 1 6 1
ANKRD7 WILD-TYPE 93 227 84
'SLC34A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 0.67

Table S2909.  Gene #307: 'SLC34A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SLC34A1 MUTATED 0 2 2 6
SLC34A1 WILD-TYPE 65 208 70 125
'SLC34A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.92

Table S2910.  Gene #307: 'SLC34A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SLC34A1 MUTATED 1 3 6
SLC34A1 WILD-TYPE 130 135 155
'SLC34A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S2911.  Gene #307: 'SLC34A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SLC34A1 MUTATED 1 1 3
SLC34A1 WILD-TYPE 41 70 60
'SLC34A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S2912.  Gene #307: 'SLC34A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SLC34A1 MUTATED 0 2 2 0 1
SLC34A1 WILD-TYPE 39 30 41 30 31
'SLC34A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S2913.  Gene #307: 'SLC34A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SLC34A1 MUTATED 2 4 4
SLC34A1 WILD-TYPE 148 181 139
'SLC34A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S2914.  Gene #307: 'SLC34A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SLC34A1 MUTATED 0 4 2 1 2 0 1
SLC34A1 WILD-TYPE 72 105 88 43 47 46 67
'SLC34A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S2915.  Gene #307: 'SLC34A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SLC34A1 MUTATED 3 5 2
SLC34A1 WILD-TYPE 172 206 88
'SLC34A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0677 (Fisher's exact test), Q value = 0.65

Table S2916.  Gene #307: 'SLC34A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SLC34A1 MUTATED 1 8 1 0
SLC34A1 WILD-TYPE 69 178 130 89
'SLC34A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S2917.  Gene #307: 'SLC34A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SLC34A1 MUTATED 2 5 3
SLC34A1 WILD-TYPE 139 177 86
'SLC34A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.95

Table S2918.  Gene #307: 'SLC34A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SLC34A1 MUTATED 1 5 4
SLC34A1 WILD-TYPE 93 228 81
'MSN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S2919.  Gene #308: 'MSN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MSN MUTATED 1 3 1 3
MSN WILD-TYPE 64 207 71 128
'MSN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 1

Table S2920.  Gene #308: 'MSN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MSN MUTATED 1 3 4
MSN WILD-TYPE 130 135 157
'MSN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S2921.  Gene #308: 'MSN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
MSN MUTATED 0 1 2
MSN WILD-TYPE 42 70 61
'MSN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S2922.  Gene #308: 'MSN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
MSN MUTATED 0 0 1 1 1
MSN WILD-TYPE 39 32 42 29 31
'MSN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.73

Table S2923.  Gene #308: 'MSN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MSN MUTATED 0 5 3
MSN WILD-TYPE 150 180 140
'MSN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S2924.  Gene #308: 'MSN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MSN MUTATED 0 4 2 0 1 1 0
MSN WILD-TYPE 72 105 88 44 48 45 68
'MSN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.84

Table S2925.  Gene #308: 'MSN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MSN MUTATED 2 6 0
MSN WILD-TYPE 173 205 90
'MSN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.73

Table S2926.  Gene #308: 'MSN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MSN MUTATED 2 3 0 3
MSN WILD-TYPE 68 183 131 86
'MSN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S2927.  Gene #308: 'MSN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MSN MUTATED 2 4 2
MSN WILD-TYPE 139 178 87
'MSN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.97

Table S2928.  Gene #308: 'MSN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MSN MUTATED 0 6 2
MSN WILD-TYPE 94 227 83
'FXYD5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S2929.  Gene #309: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
FXYD5 MUTATED 0 4 1 1
FXYD5 WILD-TYPE 65 206 71 130
'FXYD5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S2930.  Gene #309: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
FXYD5 MUTATED 0 2 3
FXYD5 WILD-TYPE 131 136 158
'FXYD5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S2931.  Gene #309: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
FXYD5 MUTATED 1 4 1
FXYD5 WILD-TYPE 149 181 142
'FXYD5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.95

Table S2932.  Gene #309: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
FXYD5 MUTATED 0 4 1 1 0 0 0
FXYD5 WILD-TYPE 72 105 89 43 49 46 68
'FXYD5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.9

Table S2933.  Gene #309: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
FXYD5 MUTATED 4 1 1
FXYD5 WILD-TYPE 171 210 89
'FXYD5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S2934.  Gene #309: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
FXYD5 MUTATED 2 2 1 1
FXYD5 WILD-TYPE 68 184 130 88
'FXYD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2935.  Gene #309: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
FXYD5 MUTATED 2 2 1
FXYD5 WILD-TYPE 139 180 88
'FXYD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2936.  Gene #309: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
FXYD5 MUTATED 1 3 1
FXYD5 WILD-TYPE 93 230 84
'NXF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S2937.  Gene #310: 'NXF5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
NXF5 MUTATED 2 6 1 4
NXF5 WILD-TYPE 63 204 71 127
'NXF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S2938.  Gene #310: 'NXF5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
NXF5 MUTATED 3 2 5
NXF5 WILD-TYPE 128 136 156
'NXF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2939.  Gene #310: 'NXF5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
NXF5 MUTATED 2 3 2
NXF5 WILD-TYPE 40 68 61
'NXF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S2940.  Gene #310: 'NXF5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
NXF5 MUTATED 2 0 2 1 2
NXF5 WILD-TYPE 37 32 41 29 30
'NXF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S2941.  Gene #310: 'NXF5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
NXF5 MUTATED 5 5 3
NXF5 WILD-TYPE 145 180 140
'NXF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S2942.  Gene #310: 'NXF5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
NXF5 MUTATED 3 3 3 0 2 0 2
NXF5 WILD-TYPE 69 106 87 44 47 46 66
'NXF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.76

Table S2943.  Gene #310: 'NXF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
NXF5 MUTATED 7 6 0
NXF5 WILD-TYPE 168 205 90
'NXF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S2944.  Gene #310: 'NXF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
NXF5 MUTATED 1 4 5 3
NXF5 WILD-TYPE 69 182 126 86
'NXF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S2945.  Gene #310: 'NXF5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
NXF5 MUTATED 4 5 1
NXF5 WILD-TYPE 137 177 88
'NXF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S2946.  Gene #310: 'NXF5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
NXF5 MUTATED 1 7 2
NXF5 WILD-TYPE 93 226 83
'CDK16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S2947.  Gene #311: 'CDK16 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CDK16 MUTATED 0 4 0 1
CDK16 WILD-TYPE 65 206 72 130
'CDK16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S2948.  Gene #311: 'CDK16 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CDK16 MUTATED 2 2 1
CDK16 WILD-TYPE 129 136 160
'CDK16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2949.  Gene #311: 'CDK16 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CDK16 MUTATED 2 2 1
CDK16 WILD-TYPE 148 183 142
'CDK16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S2950.  Gene #311: 'CDK16 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CDK16 MUTATED 1 1 2 0 1 0 0
CDK16 WILD-TYPE 71 108 88 44 48 46 68
'CDK16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.93

Table S2951.  Gene #311: 'CDK16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CDK16 MUTATED 2 1 2
CDK16 WILD-TYPE 173 210 88
'CDK16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S2952.  Gene #311: 'CDK16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CDK16 MUTATED 0 1 2 2
CDK16 WILD-TYPE 70 185 129 87
'CDK16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S2953.  Gene #311: 'CDK16 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CDK16 MUTATED 1 3 1
CDK16 WILD-TYPE 140 179 88
'CDK16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2954.  Gene #311: 'CDK16 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CDK16 MUTATED 1 3 1
CDK16 WILD-TYPE 93 230 84
'COL19A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.97

Table S2955.  Gene #312: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
COL19A1 MUTATED 6 12 7 14
COL19A1 WILD-TYPE 59 198 65 117
'COL19A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00276 (Fisher's exact test), Q value = 0.19

Table S2956.  Gene #312: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
COL19A1 MUTATED 3 18 16
COL19A1 WILD-TYPE 128 120 145

Figure S298.  Get High-res Image Gene #312: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'COL19A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.62

Table S2957.  Gene #312: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
COL19A1 MUTATED 0 5 7
COL19A1 WILD-TYPE 42 66 56
'COL19A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.88

Table S2958.  Gene #312: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
COL19A1 MUTATED 1 1 5 4 1
COL19A1 WILD-TYPE 38 31 38 26 31
'COL19A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0458 (Fisher's exact test), Q value = 0.61

Table S2959.  Gene #312: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
COL19A1 MUTATED 6 21 12
COL19A1 WILD-TYPE 144 164 131

Figure S299.  Get High-res Image Gene #312: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'COL19A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0586 (Fisher's exact test), Q value = 0.62

Table S2960.  Gene #312: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
COL19A1 MUTATED 2 10 13 1 6 4 3
COL19A1 WILD-TYPE 70 99 77 43 43 42 65
'COL19A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00279 (Fisher's exact test), Q value = 0.19

Table S2961.  Gene #312: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
COL19A1 MUTATED 6 27 6
COL19A1 WILD-TYPE 169 184 84

Figure S300.  Get High-res Image Gene #312: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'COL19A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00162 (Fisher's exact test), Q value = 0.13

Table S2962.  Gene #312: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
COL19A1 MUTATED 5 16 3 15
COL19A1 WILD-TYPE 65 170 128 74

Figure S301.  Get High-res Image Gene #312: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'COL19A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S2963.  Gene #312: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
COL19A1 MUTATED 10 20 7
COL19A1 WILD-TYPE 131 162 82
'COL19A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00668 (Fisher's exact test), Q value = 0.29

Table S2964.  Gene #312: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
COL19A1 MUTATED 2 29 6
COL19A1 WILD-TYPE 92 204 79

Figure S302.  Get High-res Image Gene #312: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PTPRN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.73

Table S2965.  Gene #313: 'PTPRN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PTPRN MUTATED 4 4 5 5
PTPRN WILD-TYPE 61 206 67 126
'PTPRN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.88

Table S2966.  Gene #313: 'PTPRN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PTPRN MUTATED 3 9 6
PTPRN WILD-TYPE 128 129 155
'PTPRN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S2967.  Gene #313: 'PTPRN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
PTPRN MUTATED 2 2 3
PTPRN WILD-TYPE 40 69 60
'PTPRN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.82

Table S2968.  Gene #313: 'PTPRN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
PTPRN MUTATED 0 1 4 0 2
PTPRN WILD-TYPE 39 31 39 30 30
'PTPRN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.78

Table S2969.  Gene #313: 'PTPRN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PTPRN MUTATED 2 9 7
PTPRN WILD-TYPE 148 176 136
'PTPRN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.96

Table S2970.  Gene #313: 'PTPRN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PTPRN MUTATED 0 4 6 1 3 1 3
PTPRN WILD-TYPE 72 105 84 43 46 45 65
'PTPRN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.83

Table S2971.  Gene #313: 'PTPRN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PTPRN MUTATED 4 12 2
PTPRN WILD-TYPE 171 199 88
'PTPRN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S2972.  Gene #313: 'PTPRN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PTPRN MUTATED 3 8 3 4
PTPRN WILD-TYPE 67 178 128 85
'PTPRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S2973.  Gene #313: 'PTPRN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PTPRN MUTATED 7 9 2
PTPRN WILD-TYPE 134 173 87
'PTPRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S2974.  Gene #313: 'PTPRN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PTPRN MUTATED 3 10 5
PTPRN WILD-TYPE 91 223 80
'FBXW7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S2975.  Gene #314: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
FBXW7 MUTATED 1 5 3 3
FBXW7 WILD-TYPE 64 205 69 128
'FBXW7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S2976.  Gene #314: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
FBXW7 MUTATED 2 3 6
FBXW7 WILD-TYPE 129 135 155
'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S2977.  Gene #314: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
FBXW7 MUTATED 3 6 3
FBXW7 WILD-TYPE 147 179 140
'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S2978.  Gene #314: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
FBXW7 MUTATED 2 5 2 1 0 1 1
FBXW7 WILD-TYPE 70 104 88 43 49 45 67
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S2979.  Gene #314: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
FBXW7 MUTATED 3 7 2
FBXW7 WILD-TYPE 172 204 88
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.96

Table S2980.  Gene #314: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
FBXW7 MUTATED 0 7 2 3
FBXW7 WILD-TYPE 70 179 129 86
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S2981.  Gene #314: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
FBXW7 MUTATED 4 3 3
FBXW7 WILD-TYPE 137 179 86
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.73

Table S2982.  Gene #314: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
FBXW7 MUTATED 0 6 4
FBXW7 WILD-TYPE 94 227 81
'SYTL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0779 (Fisher's exact test), Q value = 0.67

Table S2983.  Gene #315: 'SYTL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SYTL1 MUTATED 1 0 2 2
SYTL1 WILD-TYPE 64 210 70 129
'SYTL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.57

Table S2984.  Gene #315: 'SYTL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SYTL1 MUTATED 0 0 4
SYTL1 WILD-TYPE 131 138 157

Figure S303.  Get High-res Image Gene #315: 'SYTL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SYTL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.81

Table S2985.  Gene #315: 'SYTL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SYTL1 MUTATED 0 4 1
SYTL1 WILD-TYPE 150 181 142
'SYTL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.97

Table S2986.  Gene #315: 'SYTL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SYTL1 MUTATED 0 2 1 0 0 2 0
SYTL1 WILD-TYPE 72 107 89 44 49 44 68
'SYTL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0485 (Fisher's exact test), Q value = 0.62

Table S2987.  Gene #315: 'SYTL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SYTL1 MUTATED 0 5 0
SYTL1 WILD-TYPE 175 206 90

Figure S304.  Get High-res Image Gene #315: 'SYTL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SYTL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.93

Table S2988.  Gene #315: 'SYTL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SYTL1 MUTATED 0 4 0 1
SYTL1 WILD-TYPE 70 182 131 88
'SYTL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.81

Table S2989.  Gene #315: 'SYTL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SYTL1 MUTATED 0 1 2
SYTL1 WILD-TYPE 141 181 87
'SYTL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S2990.  Gene #315: 'SYTL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SYTL1 MUTATED 0 3 0
SYTL1 WILD-TYPE 94 230 85
'PIK3C2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0395 (Fisher's exact test), Q value = 0.58

Table S2991.  Gene #316: 'PIK3C2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PIK3C2B MUTATED 4 3 5 7
PIK3C2B WILD-TYPE 61 207 67 124

Figure S305.  Get High-res Image Gene #316: 'PIK3C2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PIK3C2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0951 (Fisher's exact test), Q value = 0.72

Table S2992.  Gene #316: 'PIK3C2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PIK3C2B MUTATED 5 2 10
PIK3C2B WILD-TYPE 126 136 151
'PIK3C2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S2993.  Gene #316: 'PIK3C2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
PIK3C2B MUTATED 0 3 3
PIK3C2B WILD-TYPE 42 68 60
'PIK3C2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S2994.  Gene #316: 'PIK3C2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
PIK3C2B MUTATED 2 1 3 0 0
PIK3C2B WILD-TYPE 37 31 40 30 32
'PIK3C2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0994 (Fisher's exact test), Q value = 0.73

Table S2995.  Gene #316: 'PIK3C2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PIK3C2B MUTATED 4 12 3
PIK3C2B WILD-TYPE 146 173 140
'PIK3C2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S2996.  Gene #316: 'PIK3C2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PIK3C2B MUTATED 3 8 4 0 2 1 1
PIK3C2B WILD-TYPE 69 101 86 44 47 45 67
'PIK3C2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.97

Table S2997.  Gene #316: 'PIK3C2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PIK3C2B MUTATED 4 11 4
PIK3C2B WILD-TYPE 171 200 86
'PIK3C2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S2998.  Gene #316: 'PIK3C2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PIK3C2B MUTATED 1 11 4 3
PIK3C2B WILD-TYPE 69 175 127 86
'PIK3C2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S2999.  Gene #316: 'PIK3C2B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PIK3C2B MUTATED 4 10 3
PIK3C2B WILD-TYPE 137 172 86
'PIK3C2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0234 (Fisher's exact test), Q value = 0.48

Table S3000.  Gene #316: 'PIK3C2B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PIK3C2B MUTATED 0 14 3
PIK3C2B WILD-TYPE 94 219 82

Figure S306.  Get High-res Image Gene #316: 'PIK3C2B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FTSJ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S3001.  Gene #317: 'FTSJ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
FTSJ1 MUTATED 1 2 2 2
FTSJ1 WILD-TYPE 64 208 70 129
'FTSJ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.78

Table S3002.  Gene #317: 'FTSJ1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
FTSJ1 MUTATED 0 4 2
FTSJ1 WILD-TYPE 131 134 159
'FTSJ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.9

Table S3003.  Gene #317: 'FTSJ1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
FTSJ1 MUTATED 2 1 0
FTSJ1 WILD-TYPE 40 70 63
'FTSJ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S3004.  Gene #317: 'FTSJ1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
FTSJ1 MUTATED 0 1 1 0 1
FTSJ1 WILD-TYPE 39 31 42 30 31
'FTSJ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.83

Table S3005.  Gene #317: 'FTSJ1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
FTSJ1 MUTATED 0 4 3
FTSJ1 WILD-TYPE 150 181 140
'FTSJ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S3006.  Gene #317: 'FTSJ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
FTSJ1 MUTATED 0 3 2 1 1 0 0
FTSJ1 WILD-TYPE 72 106 88 43 48 46 68
'FTSJ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.93

Table S3007.  Gene #317: 'FTSJ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
FTSJ1 MUTATED 2 2 3
FTSJ1 WILD-TYPE 173 209 87
'FTSJ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.84

Table S3008.  Gene #317: 'FTSJ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
FTSJ1 MUTATED 2 3 0 2
FTSJ1 WILD-TYPE 68 183 131 87
'FTSJ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S3009.  Gene #317: 'FTSJ1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
FTSJ1 MUTATED 3 3 0
FTSJ1 WILD-TYPE 138 179 89
'FTSJ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S3010.  Gene #317: 'FTSJ1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
FTSJ1 MUTATED 2 3 1
FTSJ1 WILD-TYPE 92 230 84
'IFNA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0939 (Fisher's exact test), Q value = 0.72

Table S3011.  Gene #318: 'IFNA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
IFNA6 MUTATED 0 6 0 0
IFNA6 WILD-TYPE 65 204 72 131
'IFNA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3012.  Gene #318: 'IFNA6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
IFNA6 MUTATED 2 2 2
IFNA6 WILD-TYPE 129 136 159
'IFNA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S3013.  Gene #318: 'IFNA6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
IFNA6 MUTATED 0 2 1
IFNA6 WILD-TYPE 42 69 62
'IFNA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3014.  Gene #318: 'IFNA6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
IFNA6 MUTATED 1 0 1 0 1
IFNA6 WILD-TYPE 38 32 42 30 31
'IFNA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S3015.  Gene #318: 'IFNA6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
IFNA6 MUTATED 1 3 2
IFNA6 WILD-TYPE 149 182 141
'IFNA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S3016.  Gene #318: 'IFNA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
IFNA6 MUTATED 0 2 0 1 1 0 2
IFNA6 WILD-TYPE 72 107 90 43 48 46 66
'IFNA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3017.  Gene #318: 'IFNA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
IFNA6 MUTATED 2 3 1
IFNA6 WILD-TYPE 173 208 89
'IFNA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.82

Table S3018.  Gene #318: 'IFNA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
IFNA6 MUTATED 2 2 0 2
IFNA6 WILD-TYPE 68 184 131 87
'IFNA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S3019.  Gene #318: 'IFNA6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
IFNA6 MUTATED 2 2 2
IFNA6 WILD-TYPE 139 180 87
'IFNA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3020.  Gene #318: 'IFNA6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
IFNA6 MUTATED 1 4 1
IFNA6 WILD-TYPE 93 229 84
'MME MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 0.35

Table S3021.  Gene #319: 'MME MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MME MUTATED 1 4 7 2
MME WILD-TYPE 64 206 65 129

Figure S307.  Get High-res Image Gene #319: 'MME MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MME MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S3022.  Gene #319: 'MME MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MME MUTATED 3 5 3
MME WILD-TYPE 128 133 158
'MME MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S3023.  Gene #319: 'MME MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
MME MUTATED 0 1 2
MME WILD-TYPE 42 70 61
'MME MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S3024.  Gene #319: 'MME MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
MME MUTATED 0 0 2 1 0
MME WILD-TYPE 39 32 41 29 32
'MME MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.35

Table S3025.  Gene #319: 'MME MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MME MUTATED 0 9 5
MME WILD-TYPE 150 176 138

Figure S308.  Get High-res Image Gene #319: 'MME MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MME MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S3026.  Gene #319: 'MME MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MME MUTATED 1 5 4 1 1 2 0
MME WILD-TYPE 71 104 86 43 48 44 68
'MME MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.93

Table S3027.  Gene #319: 'MME MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MME MUTATED 2 8 2
MME WILD-TYPE 173 203 88
'MME MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0287 (Fisher's exact test), Q value = 0.53

Table S3028.  Gene #319: 'MME MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MME MUTATED 1 6 0 5
MME WILD-TYPE 69 180 131 84

Figure S309.  Get High-res Image Gene #319: 'MME MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MME MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S3029.  Gene #319: 'MME MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MME MUTATED 2 5 3
MME WILD-TYPE 139 177 86
'MME MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0188 (Fisher's exact test), Q value = 0.43

Table S3030.  Gene #319: 'MME MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MME MUTATED 0 10 0
MME WILD-TYPE 94 223 85

Figure S310.  Get High-res Image Gene #319: 'MME MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HYDIN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S3031.  Gene #320: 'HYDIN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
HYDIN MUTATED 1 2 0 0
HYDIN WILD-TYPE 4 5 5 3
'HYDIN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3032.  Gene #320: 'HYDIN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
HYDIN MUTATED 1 1 1
HYDIN WILD-TYPE 6 8 3
'HYDIN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.88

Table S3033.  Gene #320: 'HYDIN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
HYDIN MUTATED 6 16 11 16
HYDIN WILD-TYPE 59 194 61 115
'HYDIN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.87

Table S3034.  Gene #320: 'HYDIN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
HYDIN MUTATED 8 15 19
HYDIN WILD-TYPE 123 123 142
'HYDIN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S3035.  Gene #320: 'HYDIN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
HYDIN MUTATED 2 8 4
HYDIN WILD-TYPE 40 63 59
'HYDIN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S3036.  Gene #320: 'HYDIN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
HYDIN MUTATED 3 4 2 4 1
HYDIN WILD-TYPE 36 28 41 26 31
'HYDIN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0626 (Fisher's exact test), Q value = 0.63

Table S3037.  Gene #320: 'HYDIN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
HYDIN MUTATED 10 26 12
HYDIN WILD-TYPE 140 159 131
'HYDIN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S3038.  Gene #320: 'HYDIN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
HYDIN MUTATED 4 16 9 2 6 5 6
HYDIN WILD-TYPE 68 93 81 42 43 41 62
'HYDIN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.65

Table S3039.  Gene #320: 'HYDIN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
HYDIN MUTATED 12 29 7
HYDIN WILD-TYPE 163 182 83
'HYDIN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00474 (Fisher's exact test), Q value = 0.25

Table S3040.  Gene #320: 'HYDIN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
HYDIN MUTATED 8 22 4 14
HYDIN WILD-TYPE 62 164 127 75

Figure S311.  Get High-res Image Gene #320: 'HYDIN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HYDIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S3041.  Gene #320: 'HYDIN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
HYDIN MUTATED 10 20 10
HYDIN WILD-TYPE 131 162 79
'HYDIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 0.34

Table S3042.  Gene #320: 'HYDIN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
HYDIN MUTATED 3 31 6
HYDIN WILD-TYPE 91 202 79

Figure S312.  Get High-res Image Gene #320: 'HYDIN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ILF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.99

Table S3043.  Gene #321: 'ILF3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ILF3 MUTATED 0 1 1 3
ILF3 WILD-TYPE 65 209 71 128
'ILF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3044.  Gene #321: 'ILF3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ILF3 MUTATED 1 1 2
ILF3 WILD-TYPE 130 137 159
'ILF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S3045.  Gene #321: 'ILF3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ILF3 MUTATED 1 3 1
ILF3 WILD-TYPE 149 182 142
'ILF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S3046.  Gene #321: 'ILF3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ILF3 MUTATED 0 3 2 0 0 0 0
ILF3 WILD-TYPE 72 106 88 44 49 46 68
'ILF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.78

Table S3047.  Gene #321: 'ILF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ILF3 MUTATED 0 4 0
ILF3 WILD-TYPE 175 207 90
'ILF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.85

Table S3048.  Gene #321: 'ILF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ILF3 MUTATED 1 1 0 2
ILF3 WILD-TYPE 69 185 131 87
'ILF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.96

Table S3049.  Gene #321: 'ILF3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ILF3 MUTATED 0 3 0
ILF3 WILD-TYPE 141 179 89
'ILF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S3050.  Gene #321: 'ILF3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ILF3 MUTATED 0 3 0
ILF3 WILD-TYPE 94 230 85
'METTL2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S3051.  Gene #322: 'METTL2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
METTL2B MUTATED 1 2 0 1
METTL2B WILD-TYPE 64 208 72 130
'METTL2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S3052.  Gene #322: 'METTL2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
METTL2B MUTATED 2 1 1
METTL2B WILD-TYPE 129 137 160
'METTL2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.96

Table S3053.  Gene #322: 'METTL2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
METTL2B MUTATED 0 3 1
METTL2B WILD-TYPE 150 182 142
'METTL2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S3054.  Gene #322: 'METTL2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
METTL2B MUTATED 1 1 1 0 0 1 0
METTL2B WILD-TYPE 71 108 89 44 49 45 68
'METTL2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.48

Table S3055.  Gene #322: 'METTL2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
METTL2B MUTATED 0 1 3
METTL2B WILD-TYPE 175 210 87

Figure S313.  Get High-res Image Gene #322: 'METTL2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'METTL2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 0.95

Table S3056.  Gene #322: 'METTL2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
METTL2B MUTATED 0 2 0 2
METTL2B WILD-TYPE 70 184 131 87
'METTL2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S3057.  Gene #322: 'METTL2B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
METTL2B MUTATED 1 1 2
METTL2B WILD-TYPE 140 181 87
'METTL2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S3058.  Gene #322: 'METTL2B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
METTL2B MUTATED 0 4 0
METTL2B WILD-TYPE 94 229 85
'ZNF511 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S3059.  Gene #323: 'ZNF511 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ZNF511 MUTATED 2 2 1 4
ZNF511 WILD-TYPE 63 208 71 127
'ZNF511 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S3060.  Gene #323: 'ZNF511 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ZNF511 MUTATED 2 2 4
ZNF511 WILD-TYPE 129 136 157
'ZNF511 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S3061.  Gene #323: 'ZNF511 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ZNF511 MUTATED 0 2 3
ZNF511 WILD-TYPE 42 69 60
'ZNF511 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S3062.  Gene #323: 'ZNF511 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ZNF511 MUTATED 1 0 1 2 1
ZNF511 WILD-TYPE 38 32 42 28 31
'ZNF511 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S3063.  Gene #323: 'ZNF511 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ZNF511 MUTATED 2 5 2
ZNF511 WILD-TYPE 148 180 141
'ZNF511 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S3064.  Gene #323: 'ZNF511 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ZNF511 MUTATED 1 3 1 0 2 1 1
ZNF511 WILD-TYPE 71 106 89 44 47 45 67
'ZNF511 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3065.  Gene #323: 'ZNF511 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ZNF511 MUTATED 3 4 2
ZNF511 WILD-TYPE 172 207 88
'ZNF511 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.78

Table S3066.  Gene #323: 'ZNF511 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ZNF511 MUTATED 3 5 1 0
ZNF511 WILD-TYPE 67 181 130 89
'ZNF511 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S3067.  Gene #323: 'ZNF511 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ZNF511 MUTATED 3 3 2
ZNF511 WILD-TYPE 138 179 87
'ZNF511 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0153 (Fisher's exact test), Q value = 0.4

Table S3068.  Gene #323: 'ZNF511 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ZNF511 MUTATED 0 3 5
ZNF511 WILD-TYPE 94 230 80

Figure S314.  Get High-res Image Gene #323: 'ZNF511 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'U2AF1L4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S3069.  Gene #324: 'U2AF1L4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
U2AF1L4 MUTATED 0 2 2 1
U2AF1L4 WILD-TYPE 65 208 70 130
'U2AF1L4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S3070.  Gene #324: 'U2AF1L4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
U2AF1L4 MUTATED 2 1 2
U2AF1L4 WILD-TYPE 129 137 159
'U2AF1L4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S3071.  Gene #324: 'U2AF1L4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
U2AF1L4 MUTATED 1 3 1
U2AF1L4 WILD-TYPE 149 182 142
'U2AF1L4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S3072.  Gene #324: 'U2AF1L4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
U2AF1L4 MUTATED 0 2 2 0 0 1 0
U2AF1L4 WILD-TYPE 72 107 88 44 49 45 68
'U2AF1L4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S3073.  Gene #324: 'U2AF1L4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
U2AF1L4 MUTATED 1 3 1
U2AF1L4 WILD-TYPE 174 208 89
'U2AF1L4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.9

Table S3074.  Gene #324: 'U2AF1L4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
U2AF1L4 MUTATED 0 3 0 2
U2AF1L4 WILD-TYPE 70 183 131 87
'U2AF1L4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S3075.  Gene #324: 'U2AF1L4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
U2AF1L4 MUTATED 1 3 1
U2AF1L4 WILD-TYPE 140 179 88
'U2AF1L4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.88

Table S3076.  Gene #324: 'U2AF1L4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
U2AF1L4 MUTATED 0 5 0
U2AF1L4 WILD-TYPE 94 228 85
'HTR3D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S3077.  Gene #325: 'HTR3D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
HTR3D MUTATED 1 1 0 2
HTR3D WILD-TYPE 64 209 72 129
'HTR3D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.73

Table S3078.  Gene #325: 'HTR3D MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
HTR3D MUTATED 1 3 0
HTR3D WILD-TYPE 130 135 161
'HTR3D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.79

Table S3079.  Gene #325: 'HTR3D MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
HTR3D MUTATED 0 1 3
HTR3D WILD-TYPE 150 184 140
'HTR3D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0951 (Fisher's exact test), Q value = 0.72

Table S3080.  Gene #325: 'HTR3D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
HTR3D MUTATED 0 0 3 1 0 0 0
HTR3D WILD-TYPE 72 109 87 43 49 46 68
'HTR3D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3081.  Gene #325: 'HTR3D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
HTR3D MUTATED 1 2 1
HTR3D WILD-TYPE 174 209 89
'HTR3D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S3082.  Gene #325: 'HTR3D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
HTR3D MUTATED 1 2 0 1
HTR3D WILD-TYPE 69 184 131 88
'HTR3D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S3083.  Gene #325: 'HTR3D MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
HTR3D MUTATED 1 3 0
HTR3D WILD-TYPE 140 179 89
'HTR3D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S3084.  Gene #325: 'HTR3D MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
HTR3D MUTATED 1 3 0
HTR3D WILD-TYPE 93 230 85
'EIF4E2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.78

Table S3085.  Gene #326: 'EIF4E2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
EIF4E2 MUTATED 1 0 1 2
EIF4E2 WILD-TYPE 64 210 71 129
'EIF4E2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S3086.  Gene #326: 'EIF4E2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
EIF4E2 MUTATED 0 2 2
EIF4E2 WILD-TYPE 131 136 159
'EIF4E2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S3087.  Gene #326: 'EIF4E2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
EIF4E2 MUTATED 1 3 0
EIF4E2 WILD-TYPE 149 182 143
'EIF4E2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S3088.  Gene #326: 'EIF4E2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
EIF4E2 MUTATED 0 2 1 0 0 1 0
EIF4E2 WILD-TYPE 72 107 89 44 49 45 68
'EIF4E2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S3089.  Gene #326: 'EIF4E2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
EIF4E2 MUTATED 1 3 0
EIF4E2 WILD-TYPE 174 208 90
'EIF4E2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S3090.  Gene #326: 'EIF4E2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
EIF4E2 MUTATED 0 3 1 0
EIF4E2 WILD-TYPE 70 183 130 89
'EIF4E2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.98

Table S3091.  Gene #326: 'EIF4E2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
EIF4E2 MUTATED 0 3 1
EIF4E2 WILD-TYPE 141 179 88
'EIF4E2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S3092.  Gene #326: 'EIF4E2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
EIF4E2 MUTATED 0 4 0
EIF4E2 WILD-TYPE 94 229 85
'GAL3ST4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S3093.  Gene #327: 'GAL3ST4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
GAL3ST4 MUTATED 1 5 1 4
GAL3ST4 WILD-TYPE 64 205 71 127
'GAL3ST4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0737 (Fisher's exact test), Q value = 0.66

Table S3094.  Gene #327: 'GAL3ST4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
GAL3ST4 MUTATED 0 5 5
GAL3ST4 WILD-TYPE 131 133 156
'GAL3ST4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3095.  Gene #327: 'GAL3ST4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
GAL3ST4 MUTATED 4 4 3
GAL3ST4 WILD-TYPE 146 181 140
'GAL3ST4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S3096.  Gene #327: 'GAL3ST4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
GAL3ST4 MUTATED 0 4 3 0 2 0 2
GAL3ST4 WILD-TYPE 72 105 87 44 47 46 66
'GAL3ST4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.37

Table S3097.  Gene #327: 'GAL3ST4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
GAL3ST4 MUTATED 1 4 6
GAL3ST4 WILD-TYPE 174 207 84

Figure S315.  Get High-res Image Gene #327: 'GAL3ST4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GAL3ST4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S3098.  Gene #327: 'GAL3ST4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
GAL3ST4 MUTATED 0 6 2 3
GAL3ST4 WILD-TYPE 70 180 129 86
'GAL3ST4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.81

Table S3099.  Gene #327: 'GAL3ST4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
GAL3ST4 MUTATED 1 4 4
GAL3ST4 WILD-TYPE 140 178 85
'GAL3ST4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S3100.  Gene #327: 'GAL3ST4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
GAL3ST4 MUTATED 2 6 1
GAL3ST4 WILD-TYPE 92 227 84
'MBD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0595 (Fisher's exact test), Q value = 0.62

Table S3101.  Gene #328: 'MBD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MBD1 MUTATED 2 2 0 6
MBD1 WILD-TYPE 63 208 72 125
'MBD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S3102.  Gene #328: 'MBD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MBD1 MUTATED 1 3 4
MBD1 WILD-TYPE 130 135 157
'MBD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S3103.  Gene #328: 'MBD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
MBD1 MUTATED 0 2 2
MBD1 WILD-TYPE 42 69 61
'MBD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S3104.  Gene #328: 'MBD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
MBD1 MUTATED 1 0 1 2 0
MBD1 WILD-TYPE 38 32 42 28 32
'MBD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.98

Table S3105.  Gene #328: 'MBD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MBD1 MUTATED 3 2 5
MBD1 WILD-TYPE 147 183 138
'MBD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S3106.  Gene #328: 'MBD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MBD1 MUTATED 1 2 4 1 1 1 0
MBD1 WILD-TYPE 71 107 86 43 48 45 68
'MBD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S3107.  Gene #328: 'MBD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MBD1 MUTATED 4 5 1
MBD1 WILD-TYPE 171 206 89
'MBD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.95

Table S3108.  Gene #328: 'MBD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MBD1 MUTATED 1 4 1 4
MBD1 WILD-TYPE 69 182 130 85
'MBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.73

Table S3109.  Gene #328: 'MBD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MBD1 MUTATED 5 1 2
MBD1 WILD-TYPE 136 181 87
'MBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.93

Table S3110.  Gene #328: 'MBD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MBD1 MUTATED 1 7 0
MBD1 WILD-TYPE 93 226 85
'WAC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S3111.  Gene #329: 'WAC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
WAC MUTATED 2 5 0 4
WAC WILD-TYPE 63 205 72 127
'WAC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3112.  Gene #329: 'WAC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
WAC MUTATED 3 3 3
WAC WILD-TYPE 128 135 158
'WAC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3113.  Gene #329: 'WAC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
WAC MUTATED 4 4 3
WAC WILD-TYPE 146 181 140
'WAC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S3114.  Gene #329: 'WAC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
WAC MUTATED 2 3 4 0 0 0 2
WAC WILD-TYPE 70 106 86 44 49 46 66
'WAC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0845 (Fisher's exact test), Q value = 0.68

Table S3115.  Gene #329: 'WAC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
WAC MUTATED 3 3 5
WAC WILD-TYPE 172 208 85
'WAC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S3116.  Gene #329: 'WAC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
WAC MUTATED 0 5 5 1
WAC WILD-TYPE 70 181 126 88
'WAC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 0.5

Table S3117.  Gene #329: 'WAC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
WAC MUTATED 3 1 5
WAC WILD-TYPE 138 181 84

Figure S316.  Get High-res Image Gene #329: 'WAC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'WAC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3118.  Gene #329: 'WAC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
WAC MUTATED 2 5 2
WAC WILD-TYPE 92 228 83
'PGBD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S3119.  Gene #330: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PGBD1 MUTATED 2 9 1 5
PGBD1 WILD-TYPE 63 201 71 126
'PGBD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00898 (Fisher's exact test), Q value = 0.33

Table S3120.  Gene #330: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PGBD1 MUTATED 0 7 9
PGBD1 WILD-TYPE 131 131 152

Figure S317.  Get High-res Image Gene #330: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PGBD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S3121.  Gene #330: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
PGBD1 MUTATED 2 5 2
PGBD1 WILD-TYPE 40 66 61
'PGBD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S3122.  Gene #330: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
PGBD1 MUTATED 3 1 3 0 2
PGBD1 WILD-TYPE 36 31 40 30 30
'PGBD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0414 (Fisher's exact test), Q value = 0.58

Table S3123.  Gene #330: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PGBD1 MUTATED 1 10 6
PGBD1 WILD-TYPE 149 175 137

Figure S318.  Get High-res Image Gene #330: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PGBD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.86

Table S3124.  Gene #330: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PGBD1 MUTATED 1 7 4 1 1 3 0
PGBD1 WILD-TYPE 71 102 86 43 48 43 68
'PGBD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S3125.  Gene #330: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PGBD1 MUTATED 7 7 3
PGBD1 WILD-TYPE 168 204 87
'PGBD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S3126.  Gene #330: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PGBD1 MUTATED 4 7 3 3
PGBD1 WILD-TYPE 66 179 128 86
'PGBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S3127.  Gene #330: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PGBD1 MUTATED 4 10 2
PGBD1 WILD-TYPE 137 172 87
'PGBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0784 (Fisher's exact test), Q value = 0.67

Table S3128.  Gene #330: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PGBD1 MUTATED 4 12 0
PGBD1 WILD-TYPE 90 221 85
'GRHL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S3129.  Gene #331: 'GRHL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
GRHL2 MUTATED 1 2 2 4
GRHL2 WILD-TYPE 64 208 70 127
'GRHL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.76

Table S3130.  Gene #331: 'GRHL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
GRHL2 MUTATED 1 6 2
GRHL2 WILD-TYPE 130 132 159
'GRHL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0758 (Fisher's exact test), Q value = 0.67

Table S3131.  Gene #331: 'GRHL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
GRHL2 MUTATED 1 2 6
GRHL2 WILD-TYPE 149 183 137
'GRHL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.071 (Fisher's exact test), Q value = 0.65

Table S3132.  Gene #331: 'GRHL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
GRHL2 MUTATED 0 2 1 0 1 4 1
GRHL2 WILD-TYPE 72 107 89 44 48 42 67
'GRHL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.73

Table S3133.  Gene #331: 'GRHL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
GRHL2 MUTATED 2 7 0
GRHL2 WILD-TYPE 173 204 90
'GRHL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S3134.  Gene #331: 'GRHL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
GRHL2 MUTATED 0 6 2 1
GRHL2 WILD-TYPE 70 180 129 88
'GRHL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.73

Table S3135.  Gene #331: 'GRHL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
GRHL2 MUTATED 2 7 0
GRHL2 WILD-TYPE 139 175 89
'GRHL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.79

Table S3136.  Gene #331: 'GRHL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
GRHL2 MUTATED 1 8 0
GRHL2 WILD-TYPE 93 225 85
'TARS2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S3137.  Gene #332: 'TARS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
TARS2 MUTATED 0 1 1 1
TARS2 WILD-TYPE 5 6 4 2
'TARS2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3138.  Gene #332: 'TARS2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
TARS2 MUTATED 1 1 1
TARS2 WILD-TYPE 6 8 3
'TARS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S3139.  Gene #332: 'TARS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
TARS2 MUTATED 2 4 1 3
TARS2 WILD-TYPE 63 206 71 128
'TARS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0967 (Fisher's exact test), Q value = 0.73

Table S3140.  Gene #332: 'TARS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
TARS2 MUTATED 2 0 5
TARS2 WILD-TYPE 129 138 156
'TARS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S3141.  Gene #332: 'TARS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
TARS2 MUTATED 1 1 3
TARS2 WILD-TYPE 41 70 60
'TARS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S3142.  Gene #332: 'TARS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
TARS2 MUTATED 1 1 1 0 2
TARS2 WILD-TYPE 38 31 42 30 30
'TARS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S3143.  Gene #332: 'TARS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
TARS2 MUTATED 3 5 2
TARS2 WILD-TYPE 147 180 141
'TARS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S3144.  Gene #332: 'TARS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
TARS2 MUTATED 2 4 3 0 0 0 1
TARS2 WILD-TYPE 70 105 87 44 49 46 67
'TARS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S3145.  Gene #332: 'TARS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
TARS2 MUTATED 5 3 2
TARS2 WILD-TYPE 170 208 88
'TARS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S3146.  Gene #332: 'TARS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
TARS2 MUTATED 2 3 3 2
TARS2 WILD-TYPE 68 183 128 87
'TARS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S3147.  Gene #332: 'TARS2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
TARS2 MUTATED 3 1 2
TARS2 WILD-TYPE 138 181 87
'TARS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.73

Table S3148.  Gene #332: 'TARS2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
TARS2 MUTATED 0 3 3
TARS2 WILD-TYPE 94 230 82
'ARHGEF10L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S3149.  Gene #333: 'ARHGEF10L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ARHGEF10L MUTATED 1 5 0 2
ARHGEF10L WILD-TYPE 64 205 72 129
'ARHGEF10L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S3150.  Gene #333: 'ARHGEF10L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ARHGEF10L MUTATED 1 2 3
ARHGEF10L WILD-TYPE 130 136 158
'ARHGEF10L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.83

Table S3151.  Gene #333: 'ARHGEF10L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ARHGEF10L MUTATED 0 3 0
ARHGEF10L WILD-TYPE 42 68 63
'ARHGEF10L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0393 (Fisher's exact test), Q value = 0.58

Table S3152.  Gene #333: 'ARHGEF10L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ARHGEF10L MUTATED 0 0 3 0 0
ARHGEF10L WILD-TYPE 39 32 40 30 32

Figure S319.  Get High-res Image Gene #333: 'ARHGEF10L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ARHGEF10L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S3153.  Gene #333: 'ARHGEF10L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ARHGEF10L MUTATED 4 3 1
ARHGEF10L WILD-TYPE 146 182 142
'ARHGEF10L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S3154.  Gene #333: 'ARHGEF10L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ARHGEF10L MUTATED 1 3 2 0 0 1 1
ARHGEF10L WILD-TYPE 71 106 88 44 49 45 67
'ARHGEF10L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0493 (Fisher's exact test), Q value = 0.62

Table S3155.  Gene #333: 'ARHGEF10L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ARHGEF10L MUTATED 3 1 4
ARHGEF10L WILD-TYPE 172 210 86

Figure S320.  Get High-res Image Gene #333: 'ARHGEF10L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ARHGEF10L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S3156.  Gene #333: 'ARHGEF10L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ARHGEF10L MUTATED 2 2 3 1
ARHGEF10L WILD-TYPE 68 184 128 88
'ARHGEF10L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.81

Table S3157.  Gene #333: 'ARHGEF10L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ARHGEF10L MUTATED 2 1 3
ARHGEF10L WILD-TYPE 139 181 86
'ARHGEF10L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S3158.  Gene #333: 'ARHGEF10L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ARHGEF10L MUTATED 1 3 2
ARHGEF10L WILD-TYPE 93 230 83
'EIF4G3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0971 (Fisher's exact test), Q value = 0.73

Table S3159.  Gene #334: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
EIF4G3 MUTATED 1 3 5 4
EIF4G3 WILD-TYPE 64 207 67 127
'EIF4G3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S3160.  Gene #334: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
EIF4G3 MUTATED 2 5 4
EIF4G3 WILD-TYPE 129 133 157
'EIF4G3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.95

Table S3161.  Gene #334: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
EIF4G3 MUTATED 2 5 6
EIF4G3 WILD-TYPE 148 180 137
'EIF4G3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.93

Table S3162.  Gene #334: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
EIF4G3 MUTATED 0 1 3 2 2 2 3
EIF4G3 WILD-TYPE 72 108 87 42 47 44 65
'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.83

Table S3163.  Gene #334: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
EIF4G3 MUTATED 4 8 0
EIF4G3 WILD-TYPE 171 203 90
'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.85

Table S3164.  Gene #334: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
EIF4G3 MUTATED 2 3 2 5
EIF4G3 WILD-TYPE 68 183 129 84
'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.78

Table S3165.  Gene #334: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
EIF4G3 MUTATED 7 3 1
EIF4G3 WILD-TYPE 134 179 88
'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S3166.  Gene #334: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
EIF4G3 MUTATED 3 7 1
EIF4G3 WILD-TYPE 91 226 84
'CRTC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.81

Table S3167.  Gene #335: 'CRTC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CRTC3 MUTATED 1 0 0 2
CRTC3 WILD-TYPE 64 210 72 129
'CRTC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.84

Table S3168.  Gene #335: 'CRTC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CRTC3 MUTATED 1 0 2
CRTC3 WILD-TYPE 149 185 141
'CRTC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S3169.  Gene #335: 'CRTC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CRTC3 MUTATED 0 0 2 0 0 0 1
CRTC3 WILD-TYPE 72 109 88 44 49 46 67
'CRTC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3170.  Gene #335: 'CRTC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CRTC3 MUTATED 1 2 0
CRTC3 WILD-TYPE 174 209 90
'CRTC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S3171.  Gene #335: 'CRTC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CRTC3 MUTATED 0 1 1 1
CRTC3 WILD-TYPE 70 185 130 88
'COL5A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.98

Table S3172.  Gene #336: 'COL5A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
COL5A3 MUTATED 2 6 3 9
COL5A3 WILD-TYPE 63 204 69 122
'COL5A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S3173.  Gene #336: 'COL5A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
COL5A3 MUTATED 4 6 6
COL5A3 WILD-TYPE 127 132 155
'COL5A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.97

Table S3174.  Gene #336: 'COL5A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
COL5A3 MUTATED 3 2 1
COL5A3 WILD-TYPE 39 69 62
'COL5A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S3175.  Gene #336: 'COL5A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
COL5A3 MUTATED 2 1 1 0 2
COL5A3 WILD-TYPE 37 31 42 30 30
'COL5A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.77

Table S3176.  Gene #336: 'COL5A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
COL5A3 MUTATED 5 12 3
COL5A3 WILD-TYPE 145 173 140
'COL5A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.78

Table S3177.  Gene #336: 'COL5A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
COL5A3 MUTATED 5 6 6 0 1 2 0
COL5A3 WILD-TYPE 67 103 84 44 48 44 68
'COL5A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.81

Table S3178.  Gene #336: 'COL5A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
COL5A3 MUTATED 4 13 3
COL5A3 WILD-TYPE 171 198 87
'COL5A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S3179.  Gene #336: 'COL5A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
COL5A3 MUTATED 1 8 6 5
COL5A3 WILD-TYPE 69 178 125 84
'COL5A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0695 (Fisher's exact test), Q value = 0.65

Table S3180.  Gene #336: 'COL5A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
COL5A3 MUTATED 1 9 4
COL5A3 WILD-TYPE 140 173 85
'COL5A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.73

Table S3181.  Gene #336: 'COL5A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
COL5A3 MUTATED 1 12 1
COL5A3 WILD-TYPE 93 221 84
'SF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.83

Table S3182.  Gene #337: 'SF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SF1 MUTATED 2 3 4 2
SF1 WILD-TYPE 63 207 68 129
'SF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0468 (Fisher's exact test), Q value = 0.62

Table S3183.  Gene #337: 'SF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SF1 MUTATED 0 6 4
SF1 WILD-TYPE 131 132 157

Figure S321.  Get High-res Image Gene #337: 'SF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.95

Table S3184.  Gene #337: 'SF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SF1 MUTATED 2 4 6
SF1 WILD-TYPE 148 181 137
'SF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S3185.  Gene #337: 'SF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SF1 MUTATED 1 4 3 1 2 1 0
SF1 WILD-TYPE 71 105 87 43 47 45 68
'SF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.93

Table S3186.  Gene #337: 'SF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SF1 MUTATED 2 8 2
SF1 WILD-TYPE 173 203 88
'SF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.89

Table S3187.  Gene #337: 'SF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SF1 MUTATED 1 8 1 2
SF1 WILD-TYPE 69 178 130 87
'SF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0877 (Fisher's exact test), Q value = 0.7

Table S3188.  Gene #337: 'SF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SF1 MUTATED 5 1 3
SF1 WILD-TYPE 136 181 86
'SF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.73

Table S3189.  Gene #337: 'SF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SF1 MUTATED 0 8 1
SF1 WILD-TYPE 94 225 84
'ZCCHC11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.88

Table S3190.  Gene #338: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ZCCHC11 MUTATED 1 3 4 4
ZCCHC11 WILD-TYPE 64 207 68 127
'ZCCHC11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.97

Table S3191.  Gene #338: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ZCCHC11 MUTATED 2 6 3
ZCCHC11 WILD-TYPE 129 132 158
'ZCCHC11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3192.  Gene #338: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ZCCHC11 MUTATED 1 2 1
ZCCHC11 WILD-TYPE 41 69 62
'ZCCHC11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.83

Table S3193.  Gene #338: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ZCCHC11 MUTATED 0 1 3 0 0
ZCCHC11 WILD-TYPE 39 31 40 30 32
'ZCCHC11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.84

Table S3194.  Gene #338: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ZCCHC11 MUTATED 1 6 5
ZCCHC11 WILD-TYPE 149 179 138
'ZCCHC11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0157 (Fisher's exact test), Q value = 0.4

Table S3195.  Gene #338: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ZCCHC11 MUTATED 0 3 0 1 3 4 1
ZCCHC11 WILD-TYPE 72 106 90 43 46 42 67

Figure S322.  Get High-res Image Gene #338: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZCCHC11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3196.  Gene #338: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ZCCHC11 MUTATED 4 6 2
ZCCHC11 WILD-TYPE 171 205 88
'ZCCHC11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S3197.  Gene #338: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ZCCHC11 MUTATED 2 7 1 2
ZCCHC11 WILD-TYPE 68 179 130 87
'ZCCHC11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S3198.  Gene #338: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ZCCHC11 MUTATED 2 7 2
ZCCHC11 WILD-TYPE 139 175 87
'ZCCHC11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S3199.  Gene #338: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ZCCHC11 MUTATED 3 6 2
ZCCHC11 WILD-TYPE 91 227 83
'AIFM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S3200.  Gene #339: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
AIFM1 MUTATED 2 5 1 5
AIFM1 WILD-TYPE 63 205 71 126
'AIFM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S3201.  Gene #339: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
AIFM1 MUTATED 3 3 7
AIFM1 WILD-TYPE 128 135 154
'AIFM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.76

Table S3202.  Gene #339: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
AIFM1 MUTATED 1 0 3
AIFM1 WILD-TYPE 41 71 60
'AIFM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S3203.  Gene #339: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
AIFM1 MUTATED 0 1 1 1 1
AIFM1 WILD-TYPE 39 31 42 29 31
'AIFM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S3204.  Gene #339: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
AIFM1 MUTATED 5 4 4
AIFM1 WILD-TYPE 145 181 139
'AIFM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S3205.  Gene #339: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
AIFM1 MUTATED 3 2 1 1 3 1 2
AIFM1 WILD-TYPE 69 107 89 43 46 45 66
'AIFM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S3206.  Gene #339: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
AIFM1 MUTATED 3 7 3
AIFM1 WILD-TYPE 172 204 87
'AIFM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.83

Table S3207.  Gene #339: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
AIFM1 MUTATED 1 8 4 0
AIFM1 WILD-TYPE 69 178 127 89
'AIFM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0598 (Fisher's exact test), Q value = 0.62

Table S3208.  Gene #339: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
AIFM1 MUTATED 1 7 5
AIFM1 WILD-TYPE 140 175 84
'AIFM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S3209.  Gene #339: 'AIFM1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
AIFM1 MUTATED 3 7 3
AIFM1 WILD-TYPE 91 226 82
'DCAF8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S3210.  Gene #340: 'DCAF8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
DCAF8 MUTATED 2 4 1 5
DCAF8 WILD-TYPE 63 206 71 126
'DCAF8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3211.  Gene #340: 'DCAF8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
DCAF8 MUTATED 3 3 4
DCAF8 WILD-TYPE 128 135 157
'DCAF8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.99

Table S3212.  Gene #340: 'DCAF8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
DCAF8 MUTATED 0 1 3
DCAF8 WILD-TYPE 42 70 60
'DCAF8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S3213.  Gene #340: 'DCAF8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
DCAF8 MUTATED 0 2 1 1 0
DCAF8 WILD-TYPE 39 30 42 29 32
'DCAF8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0297 (Fisher's exact test), Q value = 0.53

Table S3214.  Gene #340: 'DCAF8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
DCAF8 MUTATED 0 7 5
DCAF8 WILD-TYPE 150 178 138

Figure S323.  Get High-res Image Gene #340: 'DCAF8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'DCAF8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S3215.  Gene #340: 'DCAF8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
DCAF8 MUTATED 2 3 5 1 0 1 0
DCAF8 WILD-TYPE 70 106 85 43 49 45 68
'DCAF8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 0.5

Table S3216.  Gene #340: 'DCAF8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
DCAF8 MUTATED 1 10 1
DCAF8 WILD-TYPE 174 201 89

Figure S324.  Get High-res Image Gene #340: 'DCAF8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'DCAF8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0258 (Fisher's exact test), Q value = 0.5

Table S3217.  Gene #340: 'DCAF8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
DCAF8 MUTATED 0 5 1 6
DCAF8 WILD-TYPE 70 181 130 83

Figure S325.  Get High-res Image Gene #340: 'DCAF8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DCAF8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S3218.  Gene #340: 'DCAF8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
DCAF8 MUTATED 5 4 1
DCAF8 WILD-TYPE 136 178 88
'DCAF8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S3219.  Gene #340: 'DCAF8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
DCAF8 MUTATED 1 7 2
DCAF8 WILD-TYPE 93 226 83
'PPP2R2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.83

Table S3220.  Gene #341: 'PPP2R2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PPP2R2A MUTATED 0 1 2 3
PPP2R2A WILD-TYPE 65 209 70 128
'PPP2R2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.37

Table S3221.  Gene #341: 'PPP2R2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PPP2R2A MUTATED 0 0 5
PPP2R2A WILD-TYPE 131 138 156

Figure S326.  Get High-res Image Gene #341: 'PPP2R2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PPP2R2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.92

Table S3222.  Gene #341: 'PPP2R2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PPP2R2A MUTATED 2 4 0
PPP2R2A WILD-TYPE 148 181 143
'PPP2R2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S3223.  Gene #341: 'PPP2R2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PPP2R2A MUTATED 1 3 1 0 0 0 1
PPP2R2A WILD-TYPE 71 106 89 44 49 46 67
'PPP2R2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0296 (Fisher's exact test), Q value = 0.53

Table S3224.  Gene #341: 'PPP2R2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PPP2R2A MUTATED 0 6 0
PPP2R2A WILD-TYPE 175 205 90

Figure S327.  Get High-res Image Gene #341: 'PPP2R2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PPP2R2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.84

Table S3225.  Gene #341: 'PPP2R2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PPP2R2A MUTATED 0 4 0 2
PPP2R2A WILD-TYPE 70 182 131 87
'PPP2R2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.98

Table S3226.  Gene #341: 'PPP2R2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PPP2R2A MUTATED 0 3 1
PPP2R2A WILD-TYPE 141 179 88
'PPP2R2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S3227.  Gene #341: 'PPP2R2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PPP2R2A MUTATED 0 4 0
PPP2R2A WILD-TYPE 94 229 85
'IRF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S3228.  Gene #342: 'IRF6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
IRF6 MUTATED 1 3 3 2
IRF6 WILD-TYPE 64 207 69 129
'IRF6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S3229.  Gene #342: 'IRF6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
IRF6 MUTATED 1 4 3
IRF6 WILD-TYPE 130 134 158
'IRF6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.73

Table S3230.  Gene #342: 'IRF6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
IRF6 MUTATED 0 5 4
IRF6 WILD-TYPE 150 180 139
'IRF6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 0.95

Table S3231.  Gene #342: 'IRF6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
IRF6 MUTATED 0 4 1 1 1 2 0
IRF6 WILD-TYPE 72 105 89 43 48 44 68
'IRF6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.73

Table S3232.  Gene #342: 'IRF6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
IRF6 MUTATED 2 7 0
IRF6 WILD-TYPE 173 204 90
'IRF6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.93

Table S3233.  Gene #342: 'IRF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
IRF6 MUTATED 1 3 1 4
IRF6 WILD-TYPE 69 183 130 85
'IRF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3234.  Gene #342: 'IRF6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
IRF6 MUTATED 3 3 1
IRF6 WILD-TYPE 138 179 88
'IRF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3235.  Gene #342: 'IRF6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
IRF6 MUTATED 2 4 1
IRF6 WILD-TYPE 92 229 84
'SIRPA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S3236.  Gene #343: 'SIRPA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SIRPA MUTATED 2 4 0 4
SIRPA WILD-TYPE 63 206 72 127
'SIRPA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S3237.  Gene #343: 'SIRPA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SIRPA MUTATED 2 2 5
SIRPA WILD-TYPE 129 136 156
'SIRPA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S3238.  Gene #343: 'SIRPA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SIRPA MUTATED 0 3 3
SIRPA WILD-TYPE 42 68 60
'SIRPA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S3239.  Gene #343: 'SIRPA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SIRPA MUTATED 3 0 1 1 1
SIRPA WILD-TYPE 36 32 42 29 31
'SIRPA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S3240.  Gene #343: 'SIRPA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SIRPA MUTATED 4 4 2
SIRPA WILD-TYPE 146 181 141
'SIRPA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S3241.  Gene #343: 'SIRPA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SIRPA MUTATED 0 2 2 1 2 0 3
SIRPA WILD-TYPE 72 107 88 43 47 46 65
'SIRPA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S3242.  Gene #343: 'SIRPA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SIRPA MUTATED 4 3 3
SIRPA WILD-TYPE 171 208 87
'SIRPA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S3243.  Gene #343: 'SIRPA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SIRPA MUTATED 2 3 4 1
SIRPA WILD-TYPE 68 183 127 88
'SIRPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S3244.  Gene #343: 'SIRPA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SIRPA MUTATED 3 3 3
SIRPA WILD-TYPE 138 179 86
'SIRPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.9

Table S3245.  Gene #343: 'SIRPA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SIRPA MUTATED 1 4 4
SIRPA WILD-TYPE 93 229 81
'ANGPT4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3246.  Gene #344: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ANGPT4 MUTATED 1 5 2 3
ANGPT4 WILD-TYPE 64 205 70 128
'ANGPT4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S3247.  Gene #344: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ANGPT4 MUTATED 2 5 3
ANGPT4 WILD-TYPE 129 133 158
'ANGPT4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3248.  Gene #344: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ANGPT4 MUTATED 4 4 3
ANGPT4 WILD-TYPE 146 181 140
'ANGPT4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S3249.  Gene #344: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ANGPT4 MUTATED 0 3 3 1 2 1 1
ANGPT4 WILD-TYPE 72 106 87 43 47 45 67
'ANGPT4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S3250.  Gene #344: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ANGPT4 MUTATED 3 7 1
ANGPT4 WILD-TYPE 172 204 89
'ANGPT4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S3251.  Gene #344: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ANGPT4 MUTATED 2 6 1 2
ANGPT4 WILD-TYPE 68 180 130 87
'ANGPT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3252.  Gene #344: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ANGPT4 MUTATED 3 5 2
ANGPT4 WILD-TYPE 138 177 87
'ANGPT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.93

Table S3253.  Gene #344: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ANGPT4 MUTATED 3 7 0
ANGPT4 WILD-TYPE 91 226 85
'C12ORF71 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.78

Table S3254.  Gene #345: 'C12ORF71 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
C12ORF71 MUTATED 2 1 1 4
C12ORF71 WILD-TYPE 63 209 71 127
'C12ORF71 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.83

Table S3255.  Gene #345: 'C12ORF71 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
C12ORF71 MUTATED 0 4 3
C12ORF71 WILD-TYPE 131 134 158
'C12ORF71 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S3256.  Gene #345: 'C12ORF71 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
C12ORF71 MUTATED 2 5 1
C12ORF71 WILD-TYPE 148 180 142
'C12ORF71 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.73

Table S3257.  Gene #345: 'C12ORF71 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
C12ORF71 MUTATED 0 2 5 0 1 0 0
C12ORF71 WILD-TYPE 72 107 85 44 48 46 68
'C12ORF71 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.88

Table S3258.  Gene #345: 'C12ORF71 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
C12ORF71 MUTATED 1 6 1
C12ORF71 WILD-TYPE 174 205 89
'C12ORF71 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0323 (Fisher's exact test), Q value = 0.54

Table S3259.  Gene #345: 'C12ORF71 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
C12ORF71 MUTATED 0 2 1 5
C12ORF71 WILD-TYPE 70 184 130 84

Figure S328.  Get High-res Image Gene #345: 'C12ORF71 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C12ORF71 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S3260.  Gene #345: 'C12ORF71 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
C12ORF71 MUTATED 2 4 0
C12ORF71 WILD-TYPE 139 178 89
'C12ORF71 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.78

Table S3261.  Gene #345: 'C12ORF71 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
C12ORF71 MUTATED 0 6 0
C12ORF71 WILD-TYPE 94 227 85
'CAPG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S3262.  Gene #346: 'CAPG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CAPG MUTATED 1 2 1 2
CAPG WILD-TYPE 64 208 71 129
'CAPG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S3263.  Gene #346: 'CAPG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CAPG MUTATED 2 3 1
CAPG WILD-TYPE 129 135 160
'CAPG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.84

Table S3264.  Gene #346: 'CAPG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CAPG MUTATED 0 4 2
CAPG WILD-TYPE 150 181 141
'CAPG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S3265.  Gene #346: 'CAPG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CAPG MUTATED 0 3 2 0 0 1 0
CAPG WILD-TYPE 72 106 88 44 49 45 68
'CAPG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S3266.  Gene #346: 'CAPG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CAPG MUTATED 1 3 2
CAPG WILD-TYPE 174 208 88
'CAPG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.95

Table S3267.  Gene #346: 'CAPG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CAPG MUTATED 0 2 1 3
CAPG WILD-TYPE 70 184 130 86
'CAPG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S3268.  Gene #346: 'CAPG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CAPG MUTATED 1 3 2
CAPG WILD-TYPE 140 179 87
'CAPG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.78

Table S3269.  Gene #346: 'CAPG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CAPG MUTATED 0 6 0
CAPG WILD-TYPE 94 227 85
'PCDHGA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.54

Table S3270.  Gene #347: 'PCDHGA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
PCDHGA6 MUTATED 5 5 7 9
PCDHGA6 WILD-TYPE 60 205 65 122

Figure S329.  Get High-res Image Gene #347: 'PCDHGA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PCDHGA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S3271.  Gene #347: 'PCDHGA6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
PCDHGA6 MUTATED 6 10 8
PCDHGA6 WILD-TYPE 125 128 153
'PCDHGA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S3272.  Gene #347: 'PCDHGA6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
PCDHGA6 MUTATED 2 1 3
PCDHGA6 WILD-TYPE 40 70 60
'PCDHGA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S3273.  Gene #347: 'PCDHGA6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
PCDHGA6 MUTATED 1 3 1 1 0
PCDHGA6 WILD-TYPE 38 29 42 29 32
'PCDHGA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S3274.  Gene #347: 'PCDHGA6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
PCDHGA6 MUTATED 5 12 9
PCDHGA6 WILD-TYPE 145 173 134
'PCDHGA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0571 (Fisher's exact test), Q value = 0.62

Table S3275.  Gene #347: 'PCDHGA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
PCDHGA6 MUTATED 2 5 8 2 4 5 0
PCDHGA6 WILD-TYPE 70 104 82 42 45 41 68
'PCDHGA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0752 (Fisher's exact test), Q value = 0.67

Table S3276.  Gene #347: 'PCDHGA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
PCDHGA6 MUTATED 5 17 4
PCDHGA6 WILD-TYPE 170 194 86
'PCDHGA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.83

Table S3277.  Gene #347: 'PCDHGA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
PCDHGA6 MUTATED 3 13 3 7
PCDHGA6 WILD-TYPE 67 173 128 82
'PCDHGA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S3278.  Gene #347: 'PCDHGA6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
PCDHGA6 MUTATED 9 11 4
PCDHGA6 WILD-TYPE 132 171 85
'PCDHGA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0199 (Fisher's exact test), Q value = 0.45

Table S3279.  Gene #347: 'PCDHGA6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
PCDHGA6 MUTATED 3 20 1
PCDHGA6 WILD-TYPE 91 213 84

Figure S330.  Get High-res Image Gene #347: 'PCDHGA6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ALPP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0493 (Fisher's exact test), Q value = 0.62

Table S3280.  Gene #348: 'ALPP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ALPP MUTATED 0 3 5 3
ALPP WILD-TYPE 65 207 67 128

Figure S331.  Get High-res Image Gene #348: 'ALPP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ALPP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.97

Table S3281.  Gene #348: 'ALPP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ALPP MUTATED 2 5 2
ALPP WILD-TYPE 129 133 159
'ALPP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S3282.  Gene #348: 'ALPP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ALPP MUTATED 0 1 2
ALPP WILD-TYPE 42 70 61
'ALPP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.83

Table S3283.  Gene #348: 'ALPP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ALPP MUTATED 0 0 1 2 0
ALPP WILD-TYPE 39 32 42 28 32
'ALPP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.78

Table S3284.  Gene #348: 'ALPP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ALPP MUTATED 1 7 3
ALPP WILD-TYPE 149 178 140
'ALPP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.95

Table S3285.  Gene #348: 'ALPP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ALPP MUTATED 1 2 4 0 0 3 1
ALPP WILD-TYPE 71 107 86 44 49 43 67
'ALPP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 0.37

Table S3286.  Gene #348: 'ALPP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ALPP MUTATED 0 8 3
ALPP WILD-TYPE 175 203 87

Figure S332.  Get High-res Image Gene #348: 'ALPP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ALPP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00843 (Fisher's exact test), Q value = 0.33

Table S3287.  Gene #348: 'ALPP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ALPP MUTATED 0 10 1 0
ALPP WILD-TYPE 70 176 130 89

Figure S333.  Get High-res Image Gene #348: 'ALPP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ALPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S3288.  Gene #348: 'ALPP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ALPP MUTATED 1 5 2
ALPP WILD-TYPE 140 177 87
'ALPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S3289.  Gene #348: 'ALPP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ALPP MUTATED 2 6 0
ALPP WILD-TYPE 92 227 85
'ADCY6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S3290.  Gene #349: 'ADCY6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ADCY6 MUTATED 1 2 1 1
ADCY6 WILD-TYPE 64 208 71 130
'ADCY6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S3291.  Gene #349: 'ADCY6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ADCY6 MUTATED 2 0 2
ADCY6 WILD-TYPE 129 138 159
'ADCY6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S3292.  Gene #349: 'ADCY6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ADCY6 MUTATED 0 3 1
ADCY6 WILD-TYPE 42 68 62
'ADCY6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.95

Table S3293.  Gene #349: 'ADCY6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ADCY6 MUTATED 1 2 0 1 0
ADCY6 WILD-TYPE 38 30 43 29 32
'ADCY6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.97

Table S3294.  Gene #349: 'ADCY6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ADCY6 MUTATED 0 3 2
ADCY6 WILD-TYPE 150 182 141
'ADCY6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.82

Table S3295.  Gene #349: 'ADCY6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ADCY6 MUTATED 0 2 0 0 2 1 0
ADCY6 WILD-TYPE 72 107 90 44 47 45 68
'ADCY6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S3296.  Gene #349: 'ADCY6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ADCY6 MUTATED 1 3 1
ADCY6 WILD-TYPE 174 208 89
'ADCY6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.81

Table S3297.  Gene #349: 'ADCY6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ADCY6 MUTATED 2 3 0 0
ADCY6 WILD-TYPE 68 183 131 89
'ADCY6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00945 (Fisher's exact test), Q value = 0.33

Table S3298.  Gene #349: 'ADCY6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ADCY6 MUTATED 0 0 3
ADCY6 WILD-TYPE 141 182 86

Figure S334.  Get High-res Image Gene #349: 'ADCY6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ADCY6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S3299.  Gene #349: 'ADCY6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ADCY6 MUTATED 0 2 1
ADCY6 WILD-TYPE 94 231 84
'GOLGA6B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S3300.  Gene #350: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
GOLGA6B MUTATED 2 5 2 1
GOLGA6B WILD-TYPE 63 205 70 130
'GOLGA6B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S3301.  Gene #350: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
GOLGA6B MUTATED 4 2 4
GOLGA6B WILD-TYPE 127 136 157
'GOLGA6B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3302.  Gene #350: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
GOLGA6B MUTATED 1 2 2
GOLGA6B WILD-TYPE 41 69 61
'GOLGA6B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S3303.  Gene #350: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
GOLGA6B MUTATED 0 2 2 1 0
GOLGA6B WILD-TYPE 39 30 41 29 32
'GOLGA6B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3304.  Gene #350: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
GOLGA6B MUTATED 3 4 3
GOLGA6B WILD-TYPE 147 181 140
'GOLGA6B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S3305.  Gene #350: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
GOLGA6B MUTATED 0 4 1 1 2 1 1
GOLGA6B WILD-TYPE 72 105 89 43 47 45 67
'GOLGA6B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S3306.  Gene #350: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
GOLGA6B MUTATED 2 7 1
GOLGA6B WILD-TYPE 173 204 89
'GOLGA6B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S3307.  Gene #350: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
GOLGA6B MUTATED 1 5 1 3
GOLGA6B WILD-TYPE 69 181 130 86
'GOLGA6B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S3308.  Gene #350: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
GOLGA6B MUTATED 3 4 3
GOLGA6B WILD-TYPE 138 178 86
'GOLGA6B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.73

Table S3309.  Gene #350: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
GOLGA6B MUTATED 1 9 0
GOLGA6B WILD-TYPE 93 224 85
'TMEM135 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3310.  Gene #351: 'TMEM135 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
TMEM135 MUTATED 1 4 1 3
TMEM135 WILD-TYPE 64 206 71 128
'TMEM135 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3311.  Gene #351: 'TMEM135 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
TMEM135 MUTATED 2 3 3
TMEM135 WILD-TYPE 129 135 158
'TMEM135 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S3312.  Gene #351: 'TMEM135 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
TMEM135 MUTATED 1 5 3
TMEM135 WILD-TYPE 149 180 140
'TMEM135 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S3313.  Gene #351: 'TMEM135 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
TMEM135 MUTATED 0 3 2 0 2 1 1
TMEM135 WILD-TYPE 72 106 88 44 47 45 67
'TMEM135 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S3314.  Gene #351: 'TMEM135 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
TMEM135 MUTATED 2 5 2
TMEM135 WILD-TYPE 173 206 88
'TMEM135 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.94

Table S3315.  Gene #351: 'TMEM135 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
TMEM135 MUTATED 1 2 2 4
TMEM135 WILD-TYPE 69 184 129 85
'TMEM135 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S3316.  Gene #351: 'TMEM135 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
TMEM135 MUTATED 2 5 1
TMEM135 WILD-TYPE 139 177 88
'TMEM135 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.88

Table S3317.  Gene #351: 'TMEM135 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
TMEM135 MUTATED 0 7 1
TMEM135 WILD-TYPE 94 226 84
'MSR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S3318.  Gene #352: 'MSR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MSR1 MUTATED 0 5 1 2
MSR1 WILD-TYPE 65 205 71 129
'MSR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.83

Table S3319.  Gene #352: 'MSR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MSR1 MUTATED 0 4 3
MSR1 WILD-TYPE 131 134 158
'MSR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S3320.  Gene #352: 'MSR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MSR1 MUTATED 3 2 3
MSR1 WILD-TYPE 147 183 140
'MSR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S3321.  Gene #352: 'MSR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MSR1 MUTATED 0 2 2 1 2 0 1
MSR1 WILD-TYPE 72 107 88 43 47 46 67
'MSR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S3322.  Gene #352: 'MSR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MSR1 MUTATED 2 4 2
MSR1 WILD-TYPE 173 207 88
'MSR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S3323.  Gene #352: 'MSR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MSR1 MUTATED 1 4 1 2
MSR1 WILD-TYPE 69 182 130 87
'MSR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0461 (Fisher's exact test), Q value = 0.61

Table S3324.  Gene #352: 'MSR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MSR1 MUTATED 0 6 1
MSR1 WILD-TYPE 141 176 88

Figure S335.  Get High-res Image Gene #352: 'MSR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MSR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S3325.  Gene #352: 'MSR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MSR1 MUTATED 1 6 0
MSR1 WILD-TYPE 93 227 85
'ZNF768 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S3326.  Gene #353: 'ZNF768 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ZNF768 MUTATED 1 4 0 3
ZNF768 WILD-TYPE 64 206 72 128
'ZNF768 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S3327.  Gene #353: 'ZNF768 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ZNF768 MUTATED 3 2 3
ZNF768 WILD-TYPE 128 136 158
'ZNF768 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S3328.  Gene #353: 'ZNF768 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ZNF768 MUTATED 2 4 2
ZNF768 WILD-TYPE 148 181 141
'ZNF768 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S3329.  Gene #353: 'ZNF768 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ZNF768 MUTATED 0 3 2 1 1 0 1
ZNF768 WILD-TYPE 72 106 88 43 48 46 67
'ZNF768 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S3330.  Gene #353: 'ZNF768 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ZNF768 MUTATED 4 4 0
ZNF768 WILD-TYPE 171 207 90
'ZNF768 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S3331.  Gene #353: 'ZNF768 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ZNF768 MUTATED 2 4 1 1
ZNF768 WILD-TYPE 68 182 130 88
'ZNF768 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S3332.  Gene #353: 'ZNF768 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ZNF768 MUTATED 2 4 2
ZNF768 WILD-TYPE 139 178 87
'ZNF768 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.92

Table S3333.  Gene #353: 'ZNF768 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ZNF768 MUTATED 1 7 0
ZNF768 WILD-TYPE 93 226 85
'UNC93A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.77

Table S3334.  Gene #354: 'UNC93A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
UNC93A MUTATED 0 3 4 2
UNC93A WILD-TYPE 65 207 68 129
'UNC93A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S3335.  Gene #354: 'UNC93A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
UNC93A MUTATED 1 4 2
UNC93A WILD-TYPE 130 134 159
'UNC93A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.99

Table S3336.  Gene #354: 'UNC93A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
UNC93A MUTATED 0 1 3
UNC93A WILD-TYPE 42 70 60
'UNC93A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0717 (Fisher's exact test), Q value = 0.65

Table S3337.  Gene #354: 'UNC93A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
UNC93A MUTATED 0 2 0 2 0
UNC93A WILD-TYPE 39 30 43 28 32
'UNC93A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0578 (Fisher's exact test), Q value = 0.62

Table S3338.  Gene #354: 'UNC93A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
UNC93A MUTATED 0 6 3
UNC93A WILD-TYPE 150 179 140
'UNC93A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.88

Table S3339.  Gene #354: 'UNC93A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
UNC93A MUTATED 0 1 4 1 0 2 1
UNC93A WILD-TYPE 72 108 86 43 49 44 67
'UNC93A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S3340.  Gene #354: 'UNC93A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
UNC93A MUTATED 2 6 1
UNC93A WILD-TYPE 173 205 89
'UNC93A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S3341.  Gene #354: 'UNC93A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
UNC93A MUTATED 1 4 1 3
UNC93A WILD-TYPE 69 182 130 86
'UNC93A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S3342.  Gene #354: 'UNC93A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
UNC93A MUTATED 4 2 1
UNC93A WILD-TYPE 137 180 88
'UNC93A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S3343.  Gene #354: 'UNC93A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
UNC93A MUTATED 1 4 2
UNC93A WILD-TYPE 93 229 83
'CACNA2D4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S3344.  Gene #355: 'CACNA2D4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CACNA2D4 MUTATED 4 8 5 7
CACNA2D4 WILD-TYPE 61 202 67 124
'CACNA2D4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S3345.  Gene #355: 'CACNA2D4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CACNA2D4 MUTATED 6 10 7
CACNA2D4 WILD-TYPE 125 128 154
'CACNA2D4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S3346.  Gene #355: 'CACNA2D4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
CACNA2D4 MUTATED 1 2 0
CACNA2D4 WILD-TYPE 41 69 63
'CACNA2D4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S3347.  Gene #355: 'CACNA2D4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
CACNA2D4 MUTATED 0 0 2 0 1
CACNA2D4 WILD-TYPE 39 32 41 30 31
'CACNA2D4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S3348.  Gene #355: 'CACNA2D4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CACNA2D4 MUTATED 5 11 8
CACNA2D4 WILD-TYPE 145 174 135
'CACNA2D4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S3349.  Gene #355: 'CACNA2D4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CACNA2D4 MUTATED 1 5 8 3 2 2 3
CACNA2D4 WILD-TYPE 71 104 82 41 47 44 65
'CACNA2D4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0548 (Fisher's exact test), Q value = 0.62

Table S3350.  Gene #355: 'CACNA2D4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CACNA2D4 MUTATED 4 16 4
CACNA2D4 WILD-TYPE 171 195 86
'CACNA2D4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0108 (Fisher's exact test), Q value = 0.35

Table S3351.  Gene #355: 'CACNA2D4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CACNA2D4 MUTATED 1 12 2 9
CACNA2D4 WILD-TYPE 69 174 129 80

Figure S336.  Get High-res Image Gene #355: 'CACNA2D4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CACNA2D4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00209 (Fisher's exact test), Q value = 0.16

Table S3352.  Gene #355: 'CACNA2D4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CACNA2D4 MUTATED 1 15 7
CACNA2D4 WILD-TYPE 140 167 82

Figure S337.  Get High-res Image Gene #355: 'CACNA2D4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CACNA2D4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.029 (Fisher's exact test), Q value = 0.53

Table S3353.  Gene #355: 'CACNA2D4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CACNA2D4 MUTATED 3 19 1
CACNA2D4 WILD-TYPE 91 214 84

Figure S338.  Get High-res Image Gene #355: 'CACNA2D4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIRREL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00697 (Fisher's exact test), Q value = 0.3

Table S3354.  Gene #356: 'KIRREL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
KIRREL MUTATED 0 3 3 10
KIRREL WILD-TYPE 65 207 69 121

Figure S339.  Get High-res Image Gene #356: 'KIRREL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIRREL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.97

Table S3355.  Gene #356: 'KIRREL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
KIRREL MUTATED 2 6 7
KIRREL WILD-TYPE 129 132 154
'KIRREL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S3356.  Gene #356: 'KIRREL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
KIRREL MUTATED 0 2 3
KIRREL WILD-TYPE 42 69 60
'KIRREL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S3357.  Gene #356: 'KIRREL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
KIRREL MUTATED 1 0 2 2 0
KIRREL WILD-TYPE 38 32 41 28 32
'KIRREL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0481 (Fisher's exact test), Q value = 0.62

Table S3358.  Gene #356: 'KIRREL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
KIRREL MUTATED 2 11 3
KIRREL WILD-TYPE 148 174 140

Figure S340.  Get High-res Image Gene #356: 'KIRREL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'KIRREL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.91

Table S3359.  Gene #356: 'KIRREL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
KIRREL MUTATED 0 6 5 0 1 2 2
KIRREL WILD-TYPE 72 103 85 44 48 44 66
'KIRREL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 0.42

Table S3360.  Gene #356: 'KIRREL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
KIRREL MUTATED 1 11 4
KIRREL WILD-TYPE 174 200 86

Figure S341.  Get High-res Image Gene #356: 'KIRREL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'KIRREL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.37

Table S3361.  Gene #356: 'KIRREL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
KIRREL MUTATED 0 12 1 3
KIRREL WILD-TYPE 70 174 130 86

Figure S342.  Get High-res Image Gene #356: 'KIRREL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KIRREL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S3362.  Gene #356: 'KIRREL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
KIRREL MUTATED 4 8 3
KIRREL WILD-TYPE 137 174 86
'KIRREL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.84

Table S3363.  Gene #356: 'KIRREL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
KIRREL MUTATED 1 12 2
KIRREL WILD-TYPE 93 221 83
'ZBTB5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 0.58

Table S3364.  Gene #357: 'ZBTB5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ZBTB5 MUTATED 2 0 0 1
ZBTB5 WILD-TYPE 63 210 72 130

Figure S343.  Get High-res Image Gene #357: 'ZBTB5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZBTB5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S3365.  Gene #357: 'ZBTB5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ZBTB5 MUTATED 0 2 1
ZBTB5 WILD-TYPE 131 136 160
'ZBTB5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S3366.  Gene #357: 'ZBTB5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ZBTB5 MUTATED 0 1 2
ZBTB5 WILD-TYPE 150 184 141
'ZBTB5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.87

Table S3367.  Gene #357: 'ZBTB5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ZBTB5 MUTATED 0 0 1 1 0 1 0
ZBTB5 WILD-TYPE 72 109 89 43 49 45 68
'ZBTB5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.95

Table S3368.  Gene #357: 'ZBTB5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ZBTB5 MUTATED 0 3 0
ZBTB5 WILD-TYPE 175 208 90
'ZBTB5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.98

Table S3369.  Gene #357: 'ZBTB5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ZBTB5 MUTATED 0 3 0 0
ZBTB5 WILD-TYPE 70 183 131 89
'FANCM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.84

Table S3370.  Gene #358: 'FANCM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
FANCM MUTATED 5 9 8 9
FANCM WILD-TYPE 60 201 64 122
'FANCM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.95

Table S3371.  Gene #358: 'FANCM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
FANCM MUTATED 6 13 10
FANCM WILD-TYPE 125 125 151
'FANCM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S3372.  Gene #358: 'FANCM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
FANCM MUTATED 1 4 4
FANCM WILD-TYPE 41 67 59
'FANCM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.8

Table S3373.  Gene #358: 'FANCM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
FANCM MUTATED 0 1 5 2 1
FANCM WILD-TYPE 39 31 38 28 31
'FANCM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0482 (Fisher's exact test), Q value = 0.62

Table S3374.  Gene #358: 'FANCM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
FANCM MUTATED 4 16 11
FANCM WILD-TYPE 146 169 132

Figure S344.  Get High-res Image Gene #358: 'FANCM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'FANCM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.93

Table S3375.  Gene #358: 'FANCM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
FANCM MUTATED 1 7 9 3 3 5 3
FANCM WILD-TYPE 71 102 81 41 46 41 65
'FANCM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.88

Table S3376.  Gene #358: 'FANCM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
FANCM MUTATED 7 17 7
FANCM WILD-TYPE 168 194 83
'FANCM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.78

Table S3377.  Gene #358: 'FANCM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
FANCM MUTATED 3 10 7 11
FANCM WILD-TYPE 67 176 124 78
'FANCM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S3378.  Gene #358: 'FANCM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
FANCM MUTATED 9 11 8
FANCM WILD-TYPE 132 171 81
'FANCM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.78

Table S3379.  Gene #358: 'FANCM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
FANCM MUTATED 3 21 4
FANCM WILD-TYPE 91 212 81
'MYOF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.37

Table S3380.  Gene #359: 'MYOF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MYOF MUTATED 7 4 3 3
MYOF WILD-TYPE 58 206 69 128

Figure S345.  Get High-res Image Gene #359: 'MYOF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MYOF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S3381.  Gene #359: 'MYOF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MYOF MUTATED 3 6 7
MYOF WILD-TYPE 128 132 154
'MYOF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.94

Table S3382.  Gene #359: 'MYOF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
MYOF MUTATED 1 1 4
MYOF WILD-TYPE 41 70 59
'MYOF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0556 (Fisher's exact test), Q value = 0.62

Table S3383.  Gene #359: 'MYOF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
MYOF MUTATED 0 1 0 3 2
MYOF WILD-TYPE 39 31 43 27 30
'MYOF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00464 (Fisher's exact test), Q value = 0.24

Table S3384.  Gene #359: 'MYOF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MYOF MUTATED 1 5 11
MYOF WILD-TYPE 149 180 132

Figure S346.  Get High-res Image Gene #359: 'MYOF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MYOF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.022 (Fisher's exact test), Q value = 0.47

Table S3385.  Gene #359: 'MYOF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MYOF MUTATED 2 2 2 2 7 1 1
MYOF WILD-TYPE 70 107 88 42 42 45 67

Figure S347.  Get High-res Image Gene #359: 'MYOF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MYOF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00771 (Fisher's exact test), Q value = 0.31

Table S3386.  Gene #359: 'MYOF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MYOF MUTATED 1 10 6
MYOF WILD-TYPE 174 201 84

Figure S348.  Get High-res Image Gene #359: 'MYOF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MYOF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.8

Table S3387.  Gene #359: 'MYOF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MYOF MUTATED 0 10 3 4
MYOF WILD-TYPE 70 176 128 85
'MYOF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.84

Table S3388.  Gene #359: 'MYOF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MYOF MUTATED 3 7 6
MYOF WILD-TYPE 138 175 83
'MYOF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S3389.  Gene #359: 'MYOF MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MYOF MUTATED 2 10 4
MYOF WILD-TYPE 92 223 81
'HNRNPA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S3390.  Gene #360: 'HNRNPA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
HNRNPA3 MUTATED 1 2 1 3
HNRNPA3 WILD-TYPE 64 208 71 128
'HNRNPA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S3391.  Gene #360: 'HNRNPA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
HNRNPA3 MUTATED 3 2 2
HNRNPA3 WILD-TYPE 128 136 159
'HNRNPA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 0.5

Table S3392.  Gene #360: 'HNRNPA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
HNRNPA3 MUTATED 0 6 1
HNRNPA3 WILD-TYPE 150 179 142

Figure S349.  Get High-res Image Gene #360: 'HNRNPA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HNRNPA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.89

Table S3393.  Gene #360: 'HNRNPA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
HNRNPA3 MUTATED 0 2 4 0 0 1 0
HNRNPA3 WILD-TYPE 72 107 86 44 49 45 68
'HNRNPA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.73

Table S3394.  Gene #360: 'HNRNPA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
HNRNPA3 MUTATED 1 6 0
HNRNPA3 WILD-TYPE 174 205 90
'HNRNPA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.83

Table S3395.  Gene #360: 'HNRNPA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
HNRNPA3 MUTATED 1 3 0 3
HNRNPA3 WILD-TYPE 69 183 131 86
'HNRNPA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S3396.  Gene #360: 'HNRNPA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
HNRNPA3 MUTATED 2 3 2
HNRNPA3 WILD-TYPE 139 179 87
'HNRNPA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S3397.  Gene #360: 'HNRNPA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
HNRNPA3 MUTATED 1 6 0
HNRNPA3 WILD-TYPE 93 227 85
'LRRFIP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3398.  Gene #361: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
LRRFIP2 MUTATED 1 3 1 2
LRRFIP2 WILD-TYPE 64 207 71 129
'LRRFIP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.97

Table S3399.  Gene #361: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
LRRFIP2 MUTATED 1 4 1
LRRFIP2 WILD-TYPE 130 134 160
'LRRFIP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.76

Table S3400.  Gene #361: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
LRRFIP2 MUTATED 0 5 2
LRRFIP2 WILD-TYPE 150 180 141
'LRRFIP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.95

Table S3401.  Gene #361: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
LRRFIP2 MUTATED 0 1 3 0 0 2 1
LRRFIP2 WILD-TYPE 72 108 87 44 49 44 67
'LRRFIP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S3402.  Gene #361: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
LRRFIP2 MUTATED 1 4 2
LRRFIP2 WILD-TYPE 174 207 88
'LRRFIP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.93

Table S3403.  Gene #361: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
LRRFIP2 MUTATED 1 4 0 2
LRRFIP2 WILD-TYPE 69 182 131 87
'LRRFIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S3404.  Gene #361: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
LRRFIP2 MUTATED 1 4 1
LRRFIP2 WILD-TYPE 140 178 88
'LRRFIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.78

Table S3405.  Gene #361: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
LRRFIP2 MUTATED 0 6 0
LRRFIP2 WILD-TYPE 94 227 85
'MYLK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S3406.  Gene #362: 'MYLK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MYLK MUTATED 5 7 4 5
MYLK WILD-TYPE 60 203 68 126
'MYLK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.93

Table S3407.  Gene #362: 'MYLK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MYLK MUTATED 2 6 8
MYLK WILD-TYPE 129 132 153
'MYLK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S3408.  Gene #362: 'MYLK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
MYLK MUTATED 1 3 3
MYLK WILD-TYPE 41 68 60
'MYLK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S3409.  Gene #362: 'MYLK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
MYLK MUTATED 1 1 1 1 3
MYLK WILD-TYPE 38 31 42 29 29
'MYLK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S3410.  Gene #362: 'MYLK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MYLK MUTATED 4 10 7
MYLK WILD-TYPE 146 175 136
'MYLK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S3411.  Gene #362: 'MYLK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MYLK MUTATED 2 5 5 2 3 2 2
MYLK WILD-TYPE 70 104 85 42 46 44 66
'MYLK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0913 (Fisher's exact test), Q value = 0.72

Table S3412.  Gene #362: 'MYLK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MYLK MUTATED 3 12 5
MYLK WILD-TYPE 172 199 85
'MYLK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.37

Table S3413.  Gene #362: 'MYLK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MYLK MUTATED 1 11 1 7
MYLK WILD-TYPE 69 175 130 82

Figure S350.  Get High-res Image Gene #362: 'MYLK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MYLK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S3414.  Gene #362: 'MYLK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MYLK MUTATED 3 7 5
MYLK WILD-TYPE 138 175 84
'MYLK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S3415.  Gene #362: 'MYLK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MYLK MUTATED 2 11 2
MYLK WILD-TYPE 92 222 83
'AMELX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S3416.  Gene #363: 'AMELX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
AMELX MUTATED 1 5 0 4
AMELX WILD-TYPE 64 205 72 127
'AMELX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.88

Table S3417.  Gene #363: 'AMELX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
AMELX MUTATED 3 1 6
AMELX WILD-TYPE 128 137 155
'AMELX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0968 (Fisher's exact test), Q value = 0.73

Table S3418.  Gene #363: 'AMELX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
AMELX MUTATED 1 5 0
AMELX WILD-TYPE 41 66 63
'AMELX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S3419.  Gene #363: 'AMELX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
AMELX MUTATED 2 0 2 1 1
AMELX WILD-TYPE 37 32 41 29 31
'AMELX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S3420.  Gene #363: 'AMELX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
AMELX MUTATED 4 3 3
AMELX WILD-TYPE 146 182 140
'AMELX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S3421.  Gene #363: 'AMELX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
AMELX MUTATED 1 2 1 0 3 1 2
AMELX WILD-TYPE 71 107 89 44 46 45 66
'AMELX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.79

Table S3422.  Gene #363: 'AMELX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
AMELX MUTATED 1 6 3
AMELX WILD-TYPE 174 205 87
'AMELX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S3423.  Gene #363: 'AMELX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
AMELX MUTATED 0 4 3 3
AMELX WILD-TYPE 70 182 128 86
'AMELX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S3424.  Gene #363: 'AMELX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
AMELX MUTATED 3 3 3
AMELX WILD-TYPE 138 179 86
'AMELX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.93

Table S3425.  Gene #363: 'AMELX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
AMELX MUTATED 0 7 2
AMELX WILD-TYPE 94 226 83
'TMEM145 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S3426.  Gene #364: 'TMEM145 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
TMEM145 MUTATED 0 4 2 5
TMEM145 WILD-TYPE 65 206 70 126
'TMEM145 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S3427.  Gene #364: 'TMEM145 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
TMEM145 MUTATED 4 2 5
TMEM145 WILD-TYPE 127 136 156
'TMEM145 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0725 (Fisher's exact test), Q value = 0.65

Table S3428.  Gene #364: 'TMEM145 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
TMEM145 MUTATED 3 4 0
TMEM145 WILD-TYPE 39 67 63
'TMEM145 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S3429.  Gene #364: 'TMEM145 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
TMEM145 MUTATED 1 0 3 1 2
TMEM145 WILD-TYPE 38 32 40 29 30
'TMEM145 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S3430.  Gene #364: 'TMEM145 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
TMEM145 MUTATED 3 6 2
TMEM145 WILD-TYPE 147 179 141
'TMEM145 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S3431.  Gene #364: 'TMEM145 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
TMEM145 MUTATED 2 5 2 0 1 0 1
TMEM145 WILD-TYPE 70 104 88 44 48 46 67
'TMEM145 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.94

Table S3432.  Gene #364: 'TMEM145 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
TMEM145 MUTATED 5 6 0
TMEM145 WILD-TYPE 170 205 90
'TMEM145 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.81

Table S3433.  Gene #364: 'TMEM145 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
TMEM145 MUTATED 3 2 2 4
TMEM145 WILD-TYPE 67 184 129 85
'TMEM145 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S3434.  Gene #364: 'TMEM145 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
TMEM145 MUTATED 4 4 3
TMEM145 WILD-TYPE 137 178 86
'TMEM145 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.73

Table S3435.  Gene #364: 'TMEM145 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
TMEM145 MUTATED 0 7 4
TMEM145 WILD-TYPE 94 226 81
'GCDH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S3436.  Gene #365: 'GCDH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
GCDH MUTATED 0 2 0 2
GCDH WILD-TYPE 65 208 72 129
'GCDH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.84

Table S3437.  Gene #365: 'GCDH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
GCDH MUTATED 0 3 1
GCDH WILD-TYPE 131 135 160
'GCDH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3438.  Gene #365: 'GCDH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
GCDH MUTATED 1 2 1
GCDH WILD-TYPE 149 183 142
'GCDH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S3439.  Gene #365: 'GCDH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
GCDH MUTATED 0 0 2 0 1 0 1
GCDH WILD-TYPE 72 109 88 44 48 46 67
'GCDH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3440.  Gene #365: 'GCDH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
GCDH MUTATED 1 2 1
GCDH WILD-TYPE 174 209 89
'GCDH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S3441.  Gene #365: 'GCDH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
GCDH MUTATED 0 1 1 2
GCDH WILD-TYPE 70 185 130 87
'GCDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3442.  Gene #365: 'GCDH MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
GCDH MUTATED 1 2 1
GCDH WILD-TYPE 140 180 88
'GCDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S3443.  Gene #365: 'GCDH MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
GCDH MUTATED 0 3 1
GCDH WILD-TYPE 94 230 84
'CACNA2D1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S3444.  Gene #366: 'CACNA2D1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
CACNA2D1 MUTATED 0 3 1 1
CACNA2D1 WILD-TYPE 5 4 4 2
'CACNA2D1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S3445.  Gene #366: 'CACNA2D1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
CACNA2D1 MUTATED 1 3 1
CACNA2D1 WILD-TYPE 6 6 3
'CACNA2D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 0.47

Table S3446.  Gene #366: 'CACNA2D1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CACNA2D1 MUTATED 5 14 2 19
CACNA2D1 WILD-TYPE 60 196 70 112

Figure S351.  Get High-res Image Gene #366: 'CACNA2D1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CACNA2D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0291 (Fisher's exact test), Q value = 0.53

Table S3447.  Gene #366: 'CACNA2D1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CACNA2D1 MUTATED 5 11 20
CACNA2D1 WILD-TYPE 126 127 141

Figure S352.  Get High-res Image Gene #366: 'CACNA2D1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CACNA2D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.95

Table S3448.  Gene #366: 'CACNA2D1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
CACNA2D1 MUTATED 2 9 4
CACNA2D1 WILD-TYPE 40 62 59
'CACNA2D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0396 (Fisher's exact test), Q value = 0.58

Table S3449.  Gene #366: 'CACNA2D1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
CACNA2D1 MUTATED 3 1 8 3 0
CACNA2D1 WILD-TYPE 36 31 35 27 32

Figure S353.  Get High-res Image Gene #366: 'CACNA2D1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CACNA2D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.46

Table S3450.  Gene #366: 'CACNA2D1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CACNA2D1 MUTATED 8 24 8
CACNA2D1 WILD-TYPE 142 161 135

Figure S354.  Get High-res Image Gene #366: 'CACNA2D1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CACNA2D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0364 (Fisher's exact test), Q value = 0.56

Table S3451.  Gene #366: 'CACNA2D1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CACNA2D1 MUTATED 4 18 9 1 3 2 3
CACNA2D1 WILD-TYPE 68 91 81 43 46 44 65

Figure S355.  Get High-res Image Gene #366: 'CACNA2D1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CACNA2D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S3452.  Gene #366: 'CACNA2D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CACNA2D1 MUTATED 12 20 8
CACNA2D1 WILD-TYPE 163 191 82
'CACNA2D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.93

Table S3453.  Gene #366: 'CACNA2D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CACNA2D1 MUTATED 6 19 6 9
CACNA2D1 WILD-TYPE 64 167 125 80
'CACNA2D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S3454.  Gene #366: 'CACNA2D1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CACNA2D1 MUTATED 9 14 10
CACNA2D1 WILD-TYPE 132 168 79
'CACNA2D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S3455.  Gene #366: 'CACNA2D1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CACNA2D1 MUTATED 5 21 7
CACNA2D1 WILD-TYPE 89 212 78
'OR52E8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S3456.  Gene #367: 'OR52E8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
OR52E8 MUTATED 1 8 3 3
OR52E8 WILD-TYPE 64 202 69 128
'OR52E8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S3457.  Gene #367: 'OR52E8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
OR52E8 MUTATED 3 6 6
OR52E8 WILD-TYPE 128 132 155
'OR52E8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.73

Table S3458.  Gene #367: 'OR52E8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
OR52E8 MUTATED 2 0 1
OR52E8 WILD-TYPE 40 71 62
'OR52E8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.78

Table S3459.  Gene #367: 'OR52E8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
OR52E8 MUTATED 0 1 0 0 2
OR52E8 WILD-TYPE 39 31 43 30 30
'OR52E8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S3460.  Gene #367: 'OR52E8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
OR52E8 MUTATED 6 6 3
OR52E8 WILD-TYPE 144 179 140
'OR52E8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S3461.  Gene #367: 'OR52E8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
OR52E8 MUTATED 2 5 1 0 2 2 3
OR52E8 WILD-TYPE 70 104 89 44 47 44 65
'OR52E8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.98

Table S3462.  Gene #367: 'OR52E8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
OR52E8 MUTATED 3 9 2
OR52E8 WILD-TYPE 172 202 88
'OR52E8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S3463.  Gene #367: 'OR52E8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
OR52E8 MUTATED 0 7 4 3
OR52E8 WILD-TYPE 70 179 127 86
'OR52E8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.88

Table S3464.  Gene #367: 'OR52E8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
OR52E8 MUTATED 2 9 3
OR52E8 WILD-TYPE 139 173 86
'OR52E8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S3465.  Gene #367: 'OR52E8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
OR52E8 MUTATED 2 10 2
OR52E8 WILD-TYPE 92 223 83
'ITGA2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.95

Table S3466.  Gene #368: 'ITGA2B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ITGA2B MUTATED 1 3 2 6
ITGA2B WILD-TYPE 64 207 70 125
'ITGA2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S3467.  Gene #368: 'ITGA2B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ITGA2B MUTATED 2 4 4
ITGA2B WILD-TYPE 129 134 157
'ITGA2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0841 (Fisher's exact test), Q value = 0.68

Table S3468.  Gene #368: 'ITGA2B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ITGA2B MUTATED 0 4 0
ITGA2B WILD-TYPE 42 67 63
'ITGA2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.9

Table S3469.  Gene #368: 'ITGA2B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ITGA2B MUTATED 1 0 3 0 0
ITGA2B WILD-TYPE 38 32 40 30 32
'ITGA2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0957 (Fisher's exact test), Q value = 0.72

Table S3470.  Gene #368: 'ITGA2B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ITGA2B MUTATED 1 8 3
ITGA2B WILD-TYPE 149 177 140
'ITGA2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S3471.  Gene #368: 'ITGA2B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ITGA2B MUTATED 1 4 2 0 2 2 1
ITGA2B WILD-TYPE 71 105 88 44 47 44 67
'ITGA2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.83

Table S3472.  Gene #368: 'ITGA2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ITGA2B MUTATED 2 8 1
ITGA2B WILD-TYPE 173 203 89
'ITGA2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00892 (Fisher's exact test), Q value = 0.33

Table S3473.  Gene #368: 'ITGA2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ITGA2B MUTATED 2 3 0 6
ITGA2B WILD-TYPE 68 183 131 83

Figure S356.  Get High-res Image Gene #368: 'ITGA2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ITGA2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S3474.  Gene #368: 'ITGA2B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ITGA2B MUTATED 2 5 3
ITGA2B WILD-TYPE 139 177 86
'ITGA2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0803 (Fisher's exact test), Q value = 0.68

Table S3475.  Gene #368: 'ITGA2B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ITGA2B MUTATED 0 9 1
ITGA2B WILD-TYPE 94 224 84
'GKN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.82

Table S3476.  Gene #369: 'GKN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
GKN1 MUTATED 1 2 2 0
GKN1 WILD-TYPE 64 208 70 131
'GKN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.95

Table S3477.  Gene #369: 'GKN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
GKN1 MUTATED 1 2 0
GKN1 WILD-TYPE 130 136 161
'GKN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S3478.  Gene #369: 'GKN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
GKN1 MUTATED 1 3 1
GKN1 WILD-TYPE 149 182 142
'GKN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0231 (Fisher's exact test), Q value = 0.48

Table S3479.  Gene #369: 'GKN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
GKN1 MUTATED 0 0 1 0 0 3 1
GKN1 WILD-TYPE 72 109 89 44 49 43 67

Figure S357.  Get High-res Image Gene #369: 'GKN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GKN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S3480.  Gene #369: 'GKN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
GKN1 MUTATED 1 3 1
GKN1 WILD-TYPE 174 208 89
'GKN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.83

Table S3481.  Gene #369: 'GKN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
GKN1 MUTATED 0 1 1 3
GKN1 WILD-TYPE 70 185 130 86
'GKN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3482.  Gene #369: 'GKN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
GKN1 MUTATED 1 2 0
GKN1 WILD-TYPE 140 180 89
'GKN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S3483.  Gene #369: 'GKN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
GKN1 MUTATED 0 3 0
GKN1 WILD-TYPE 94 230 85
'ADAM11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.73

Table S3484.  Gene #370: 'ADAM11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ADAM11 MUTATED 2 2 4 4
ADAM11 WILD-TYPE 63 208 68 127
'ADAM11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.79

Table S3485.  Gene #370: 'ADAM11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ADAM11 MUTATED 1 3 7
ADAM11 WILD-TYPE 130 135 154
'ADAM11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S3486.  Gene #370: 'ADAM11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ADAM11 MUTATED 1 2 0
ADAM11 WILD-TYPE 41 69 63
'ADAM11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3487.  Gene #370: 'ADAM11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ADAM11 MUTATED 1 1 1 0 0
ADAM11 WILD-TYPE 38 31 42 30 32
'ADAM11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S3488.  Gene #370: 'ADAM11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ADAM11 MUTATED 3 6 3
ADAM11 WILD-TYPE 147 179 140
'ADAM11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S3489.  Gene #370: 'ADAM11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ADAM11 MUTATED 0 4 4 1 1 0 2
ADAM11 WILD-TYPE 72 105 86 43 48 46 66
'ADAM11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.78

Table S3490.  Gene #370: 'ADAM11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ADAM11 MUTATED 2 9 1
ADAM11 WILD-TYPE 173 202 89
'ADAM11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.8

Table S3491.  Gene #370: 'ADAM11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ADAM11 MUTATED 1 5 1 5
ADAM11 WILD-TYPE 69 181 130 84
'ADAM11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.95

Table S3492.  Gene #370: 'ADAM11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ADAM11 MUTATED 6 3 2
ADAM11 WILD-TYPE 135 179 87
'ADAM11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.97

Table S3493.  Gene #370: 'ADAM11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ADAM11 MUTATED 1 9 1
ADAM11 WILD-TYPE 93 224 84
'FZD10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0303 (Fisher's exact test), Q value = 0.53

Table S3494.  Gene #371: 'FZD10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
FZD10 MUTATED 1 8 8 11
FZD10 WILD-TYPE 64 202 64 120

Figure S358.  Get High-res Image Gene #371: 'FZD10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FZD10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.79

Table S3495.  Gene #371: 'FZD10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
FZD10 MUTATED 5 7 15
FZD10 WILD-TYPE 126 131 146
'FZD10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S3496.  Gene #371: 'FZD10 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
FZD10 MUTATED 2 3 5
FZD10 WILD-TYPE 40 68 58
'FZD10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S3497.  Gene #371: 'FZD10 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
FZD10 MUTATED 1 2 4 1 2
FZD10 WILD-TYPE 38 30 39 29 30
'FZD10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S3498.  Gene #371: 'FZD10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
FZD10 MUTATED 6 12 10
FZD10 WILD-TYPE 144 173 133
'FZD10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S3499.  Gene #371: 'FZD10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
FZD10 MUTATED 5 7 5 3 3 3 2
FZD10 WILD-TYPE 67 102 85 41 46 43 66
'FZD10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.37

Table S3500.  Gene #371: 'FZD10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
FZD10 MUTATED 6 20 2
FZD10 WILD-TYPE 169 191 88

Figure S359.  Get High-res Image Gene #371: 'FZD10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'FZD10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0381 (Fisher's exact test), Q value = 0.58

Table S3501.  Gene #371: 'FZD10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
FZD10 MUTATED 1 14 4 9
FZD10 WILD-TYPE 69 172 127 80

Figure S360.  Get High-res Image Gene #371: 'FZD10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FZD10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.83

Table S3502.  Gene #371: 'FZD10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
FZD10 MUTATED 10 14 2
FZD10 WILD-TYPE 131 168 87
'FZD10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.88

Table S3503.  Gene #371: 'FZD10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
FZD10 MUTATED 3 19 4
FZD10 WILD-TYPE 91 214 81
'TEC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.73

Table S3504.  Gene #372: 'TEC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
TEC MUTATED 2 2 4 3
TEC WILD-TYPE 63 208 68 128
'TEC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.81

Table S3505.  Gene #372: 'TEC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
TEC MUTATED 3 5 1
TEC WILD-TYPE 128 133 160
'TEC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.83

Table S3506.  Gene #372: 'TEC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
TEC MUTATED 0 3 0
TEC WILD-TYPE 42 68 63
'TEC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0401 (Fisher's exact test), Q value = 0.58

Table S3507.  Gene #372: 'TEC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
TEC MUTATED 0 0 3 0 0
TEC WILD-TYPE 39 32 40 30 32

Figure S361.  Get High-res Image Gene #372: 'TEC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'TEC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 0.54

Table S3508.  Gene #372: 'TEC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
TEC MUTATED 0 7 4
TEC WILD-TYPE 150 178 139

Figure S362.  Get High-res Image Gene #372: 'TEC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TEC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.88

Table S3509.  Gene #372: 'TEC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
TEC MUTATED 0 2 3 0 2 3 1
TEC WILD-TYPE 72 107 87 44 47 43 67
'TEC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0955 (Fisher's exact test), Q value = 0.72

Table S3510.  Gene #372: 'TEC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
TEC MUTATED 1 8 2
TEC WILD-TYPE 174 203 88
'TEC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.96

Table S3511.  Gene #372: 'TEC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
TEC MUTATED 1 5 1 4
TEC WILD-TYPE 69 181 130 85
'TEC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.85

Table S3512.  Gene #372: 'TEC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
TEC MUTATED 5 4 0
TEC WILD-TYPE 136 178 89
'TEC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.93

Table S3513.  Gene #372: 'TEC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
TEC MUTATED 0 7 2
TEC WILD-TYPE 94 226 83
'MARCH6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S3514.  Gene #373: 'MARCH6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MARCH6 MUTATED 1 4 4 4
MARCH6 WILD-TYPE 64 206 68 127
'MARCH6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S3515.  Gene #373: 'MARCH6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MARCH6 MUTATED 2 2 6
MARCH6 WILD-TYPE 129 136 155
'MARCH6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0583 (Fisher's exact test), Q value = 0.62

Table S3516.  Gene #373: 'MARCH6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
MARCH6 MUTATED 3 1 0
MARCH6 WILD-TYPE 39 70 63
'MARCH6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0603 (Fisher's exact test), Q value = 0.62

Table S3517.  Gene #373: 'MARCH6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
MARCH6 MUTATED 0 0 1 0 3
MARCH6 WILD-TYPE 39 32 42 30 29
'MARCH6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.94

Table S3518.  Gene #373: 'MARCH6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MARCH6 MUTATED 3 8 2
MARCH6 WILD-TYPE 147 177 141
'MARCH6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S3519.  Gene #373: 'MARCH6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MARCH6 MUTATED 3 5 3 1 1 0 0
MARCH6 WILD-TYPE 69 104 87 43 48 46 68
'MARCH6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S3520.  Gene #373: 'MARCH6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MARCH6 MUTATED 5 7 1
MARCH6 WILD-TYPE 170 204 89
'MARCH6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.83

Table S3521.  Gene #373: 'MARCH6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MARCH6 MUTATED 2 5 1 5
MARCH6 WILD-TYPE 68 181 130 84
'MARCH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.94

Table S3522.  Gene #373: 'MARCH6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MARCH6 MUTATED 4 5 0
MARCH6 WILD-TYPE 137 177 89
'MARCH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S3523.  Gene #373: 'MARCH6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MARCH6 MUTATED 1 5 3
MARCH6 WILD-TYPE 93 228 82
'AIFM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.95

Table S3524.  Gene #374: 'AIFM3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
AIFM3 MUTATED 1 1 2 2
AIFM3 WILD-TYPE 64 209 70 129
'AIFM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.95

Table S3525.  Gene #374: 'AIFM3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
AIFM3 MUTATED 0 3 3
AIFM3 WILD-TYPE 131 135 158
'AIFM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.84

Table S3526.  Gene #374: 'AIFM3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
AIFM3 MUTATED 0 4 2
AIFM3 WILD-TYPE 150 181 141
'AIFM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S3527.  Gene #374: 'AIFM3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
AIFM3 MUTATED 0 2 2 0 1 1 0
AIFM3 WILD-TYPE 72 107 88 44 48 45 68
'AIFM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0935 (Fisher's exact test), Q value = 0.72

Table S3528.  Gene #374: 'AIFM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
AIFM3 MUTATED 0 5 1
AIFM3 WILD-TYPE 175 206 89
'AIFM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.84

Table S3529.  Gene #374: 'AIFM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
AIFM3 MUTATED 0 4 0 2
AIFM3 WILD-TYPE 70 182 131 87
'AIFM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.84

Table S3530.  Gene #374: 'AIFM3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
AIFM3 MUTATED 1 5 0
AIFM3 WILD-TYPE 140 177 89
'AIFM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.78

Table S3531.  Gene #374: 'AIFM3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
AIFM3 MUTATED 0 6 0
AIFM3 WILD-TYPE 94 227 85
'MSRB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S3532.  Gene #375: 'MSRB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
MSRB2 MUTATED 0 4 1 1
MSRB2 WILD-TYPE 65 206 71 130
'MSRB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S3533.  Gene #375: 'MSRB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
MSRB2 MUTATED 0 2 3
MSRB2 WILD-TYPE 131 136 158
'MSRB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3534.  Gene #375: 'MSRB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
MSRB2 MUTATED 1 1 1
MSRB2 WILD-TYPE 41 70 62
'MSRB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.93

Table S3535.  Gene #375: 'MSRB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
MSRB2 MUTATED 0 0 1 0 2
MSRB2 WILD-TYPE 39 32 42 30 30
'MSRB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S3536.  Gene #375: 'MSRB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
MSRB2 MUTATED 1 4 1
MSRB2 WILD-TYPE 149 181 142
'MSRB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S3537.  Gene #375: 'MSRB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
MSRB2 MUTATED 1 2 2 0 0 1 0
MSRB2 WILD-TYPE 71 107 88 44 49 45 68
'MSRB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3538.  Gene #375: 'MSRB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
MSRB2 MUTATED 2 3 1
MSRB2 WILD-TYPE 173 208 89
'MSRB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S3539.  Gene #375: 'MSRB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
MSRB2 MUTATED 1 3 1 1
MSRB2 WILD-TYPE 69 183 130 88
'MSRB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S3540.  Gene #375: 'MSRB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
MSRB2 MUTATED 1 3 0
MSRB2 WILD-TYPE 140 179 89
'MSRB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3541.  Gene #375: 'MSRB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
MSRB2 MUTATED 1 2 1
MSRB2 WILD-TYPE 93 231 84
'KDM3B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S3542.  Gene #376: 'KDM3B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
KDM3B MUTATED 1 7 3 3
KDM3B WILD-TYPE 64 203 69 128
'KDM3B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S3543.  Gene #376: 'KDM3B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
KDM3B MUTATED 3 4 5
KDM3B WILD-TYPE 128 134 156
'KDM3B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0841 (Fisher's exact test), Q value = 0.68

Table S3544.  Gene #376: 'KDM3B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
KDM3B MUTATED 0 4 0
KDM3B WILD-TYPE 42 67 63
'KDM3B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00806 (Fisher's exact test), Q value = 0.32

Table S3545.  Gene #376: 'KDM3B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
KDM3B MUTATED 0 0 4 0 0
KDM3B WILD-TYPE 39 32 39 30 32

Figure S363.  Get High-res Image Gene #376: 'KDM3B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'KDM3B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S3546.  Gene #376: 'KDM3B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
KDM3B MUTATED 4 7 3
KDM3B WILD-TYPE 146 178 140
'KDM3B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S3547.  Gene #376: 'KDM3B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
KDM3B MUTATED 0 5 4 2 1 1 1
KDM3B WILD-TYPE 72 104 86 42 48 45 67
'KDM3B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3548.  Gene #376: 'KDM3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
KDM3B MUTATED 5 6 2
KDM3B WILD-TYPE 170 205 88
'KDM3B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S3549.  Gene #376: 'KDM3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
KDM3B MUTATED 1 4 5 3
KDM3B WILD-TYPE 69 182 126 86
'KDM3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.96

Table S3550.  Gene #376: 'KDM3B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
KDM3B MUTATED 2 5 4
KDM3B WILD-TYPE 139 177 85
'KDM3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.84

Table S3551.  Gene #376: 'KDM3B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
KDM3B MUTATED 2 9 0
KDM3B WILD-TYPE 92 224 85
'THPO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S3552.  Gene #377: 'THPO MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
THPO MUTATED 0 4 1 3
THPO WILD-TYPE 65 206 71 128
'THPO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S3553.  Gene #377: 'THPO MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
THPO MUTATED 1 3 4
THPO WILD-TYPE 130 135 157
'THPO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.99

Table S3554.  Gene #377: 'THPO MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
THPO MUTATED 1 5 2
THPO WILD-TYPE 149 180 141
'THPO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S3555.  Gene #377: 'THPO MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
THPO MUTATED 0 2 3 1 0 1 1
THPO WILD-TYPE 72 107 87 43 49 45 67
'THPO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3556.  Gene #377: 'THPO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
THPO MUTATED 3 4 1
THPO WILD-TYPE 172 207 89
'THPO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S3557.  Gene #377: 'THPO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
THPO MUTATED 1 2 2 3
THPO WILD-TYPE 69 184 129 86
'THPO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0695 (Fisher's exact test), Q value = 0.65

Table S3558.  Gene #377: 'THPO MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
THPO MUTATED 0 5 3
THPO WILD-TYPE 141 177 86
'THPO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S3559.  Gene #377: 'THPO MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
THPO MUTATED 2 6 0
THPO WILD-TYPE 92 227 85
'CACNA1F MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3560.  Gene #378: 'CACNA1F MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CACNA1F MUTATED 3 12 4 8
CACNA1F WILD-TYPE 62 198 68 123
'CACNA1F MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S3561.  Gene #378: 'CACNA1F MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CACNA1F MUTATED 7 9 10
CACNA1F WILD-TYPE 124 129 151
'CACNA1F MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S3562.  Gene #378: 'CACNA1F MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
CACNA1F MUTATED 3 2 3
CACNA1F WILD-TYPE 39 69 60
'CACNA1F MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S3563.  Gene #378: 'CACNA1F MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
CACNA1F MUTATED 2 0 1 3 2
CACNA1F WILD-TYPE 37 32 42 27 30
'CACNA1F MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S3564.  Gene #378: 'CACNA1F MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CACNA1F MUTATED 8 13 6
CACNA1F WILD-TYPE 142 172 137
'CACNA1F MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.73

Table S3565.  Gene #378: 'CACNA1F MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CACNA1F MUTATED 1 5 7 1 1 5 7
CACNA1F WILD-TYPE 71 104 83 43 48 41 61
'CACNA1F MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00768 (Fisher's exact test), Q value = 0.31

Table S3566.  Gene #378: 'CACNA1F MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CACNA1F MUTATED 10 17 0
CACNA1F WILD-TYPE 165 194 90

Figure S364.  Get High-res Image Gene #378: 'CACNA1F MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CACNA1F MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.992 (Fisher's exact test), Q value = 1

Table S3567.  Gene #378: 'CACNA1F MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CACNA1F MUTATED 4 10 8 5
CACNA1F WILD-TYPE 66 176 123 84
'CACNA1F MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S3568.  Gene #378: 'CACNA1F MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CACNA1F MUTATED 8 14 4
CACNA1F WILD-TYPE 133 168 85
'CACNA1F MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S3569.  Gene #378: 'CACNA1F MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CACNA1F MUTATED 4 16 6
CACNA1F WILD-TYPE 90 217 79
'SELE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.76

Table S3570.  Gene #379: 'SELE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
SELE MUTATED 0 8 3 1
SELE WILD-TYPE 65 202 69 130
'SELE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.93

Table S3571.  Gene #379: 'SELE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
SELE MUTATED 5 5 2
SELE WILD-TYPE 126 133 159
'SELE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S3572.  Gene #379: 'SELE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
SELE MUTATED 2 1 1
SELE WILD-TYPE 40 70 62
'SELE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.071 (Fisher's exact test), Q value = 0.65

Table S3573.  Gene #379: 'SELE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
SELE MUTATED 0 0 0 2 2
SELE WILD-TYPE 39 32 43 28 30
'SELE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S3574.  Gene #379: 'SELE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
SELE MUTATED 3 7 2
SELE WILD-TYPE 147 178 141
'SELE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.39

Table S3575.  Gene #379: 'SELE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
SELE MUTATED 0 1 3 1 0 5 2
SELE WILD-TYPE 72 108 87 43 49 41 66

Figure S365.  Get High-res Image Gene #379: 'SELE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SELE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0045 (Fisher's exact test), Q value = 0.24

Table S3576.  Gene #379: 'SELE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
SELE MUTATED 3 2 7
SELE WILD-TYPE 172 209 83

Figure S366.  Get High-res Image Gene #379: 'SELE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SELE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S3577.  Gene #379: 'SELE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
SELE MUTATED 1 6 3 2
SELE WILD-TYPE 69 180 128 87
'SELE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.91

Table S3578.  Gene #379: 'SELE MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
SELE MUTATED 3 4 5
SELE WILD-TYPE 138 178 84
'SELE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S3579.  Gene #379: 'SELE MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
SELE MUTATED 1 9 2
SELE WILD-TYPE 93 224 83
'THY1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.84

Table S3580.  Gene #380: 'THY1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
THY1 MUTATED 2 1 0 2
THY1 WILD-TYPE 63 209 72 129
'THY1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0785 (Fisher's exact test), Q value = 0.67

Table S3581.  Gene #380: 'THY1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
THY1 MUTATED 0 4 1
THY1 WILD-TYPE 131 134 160
'THY1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.97

Table S3582.  Gene #380: 'THY1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
THY1 MUTATED 0 3 2
THY1 WILD-TYPE 150 182 141
'THY1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S3583.  Gene #380: 'THY1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
THY1 MUTATED 0 1 3 0 1 0 0
THY1 WILD-TYPE 72 108 87 44 48 46 68
'THY1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S3584.  Gene #380: 'THY1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
THY1 MUTATED 1 3 1
THY1 WILD-TYPE 174 208 89
'THY1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.93

Table S3585.  Gene #380: 'THY1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
THY1 MUTATED 0 4 0 1
THY1 WILD-TYPE 70 182 131 88
'THY1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3586.  Gene #380: 'THY1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
THY1 MUTATED 2 2 1
THY1 WILD-TYPE 139 180 88
'THY1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S3587.  Gene #380: 'THY1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
THY1 MUTATED 0 4 1
THY1 WILD-TYPE 94 229 84
'TTK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S3588.  Gene #381: 'TTK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
TTK MUTATED 2 9 1 6
TTK WILD-TYPE 63 201 71 125
'TTK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S3589.  Gene #381: 'TTK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
TTK MUTATED 3 5 6
TTK WILD-TYPE 128 133 155
'TTK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0846 (Fisher's exact test), Q value = 0.68

Table S3590.  Gene #381: 'TTK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
TTK MUTATED 2 5 0
TTK WILD-TYPE 40 66 63
'TTK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.84

Table S3591.  Gene #381: 'TTK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
TTK MUTATED 1 0 3 0 3
TTK WILD-TYPE 38 32 40 30 29
'TTK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.95

Table S3592.  Gene #381: 'TTK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
TTK MUTATED 5 10 3
TTK WILD-TYPE 145 175 140
'TTK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0932 (Fisher's exact test), Q value = 0.72

Table S3593.  Gene #381: 'TTK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
TTK MUTATED 5 8 3 0 1 1 0
TTK WILD-TYPE 67 101 87 44 48 45 68
'TTK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S3594.  Gene #381: 'TTK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
TTK MUTATED 5 11 2
TTK WILD-TYPE 170 200 88
'TTK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.77

Table S3595.  Gene #381: 'TTK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
TTK MUTATED 2 12 2 2
TTK WILD-TYPE 68 174 129 87
'TTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.84

Table S3596.  Gene #381: 'TTK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
TTK MUTATED 7 3 4
TTK WILD-TYPE 134 179 85
'TTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S3597.  Gene #381: 'TTK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
TTK MUTATED 2 9 3
TTK WILD-TYPE 92 224 82
'GGNBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S3598.  Gene #382: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
GGNBP2 MUTATED 2 6 1 2
GGNBP2 WILD-TYPE 63 204 71 129
'GGNBP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S3599.  Gene #382: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
GGNBP2 MUTATED 4 4 2
GGNBP2 WILD-TYPE 127 134 159
'GGNBP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3600.  Gene #382: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
GGNBP2 MUTATED 1 2 1
GGNBP2 WILD-TYPE 41 69 62
'GGNBP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S3601.  Gene #382: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
GGNBP2 MUTATED 1 0 2 0 1
GGNBP2 WILD-TYPE 38 32 41 30 31
'GGNBP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S3602.  Gene #382: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
GGNBP2 MUTATED 3 5 3
GGNBP2 WILD-TYPE 147 180 140
'GGNBP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S3603.  Gene #382: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
GGNBP2 MUTATED 1 3 3 0 1 2 1
GGNBP2 WILD-TYPE 71 106 87 44 48 44 67
'GGNBP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S3604.  Gene #382: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
GGNBP2 MUTATED 2 6 3
GGNBP2 WILD-TYPE 173 205 87
'GGNBP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S3605.  Gene #382: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
GGNBP2 MUTATED 1 5 2 3
GGNBP2 WILD-TYPE 69 181 129 86
'GGNBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S3606.  Gene #382: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
GGNBP2 MUTATED 4 3 2
GGNBP2 WILD-TYPE 137 179 87
'GGNBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.73

Table S3607.  Gene #382: 'GGNBP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
GGNBP2 MUTATED 0 8 1
GGNBP2 WILD-TYPE 94 225 84
'ADAM23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.82

Table S3608.  Gene #383: 'ADAM23 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
ADAM23 MUTATED 2 8 6 11
ADAM23 WILD-TYPE 63 202 66 120
'ADAM23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S3609.  Gene #383: 'ADAM23 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
ADAM23 MUTATED 7 11 8
ADAM23 WILD-TYPE 124 127 153
'ADAM23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.94

Table S3610.  Gene #383: 'ADAM23 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
ADAM23 MUTATED 1 3 6
ADAM23 WILD-TYPE 41 68 57
'ADAM23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0218 (Fisher's exact test), Q value = 0.47

Table S3611.  Gene #383: 'ADAM23 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
ADAM23 MUTATED 1 0 5 4 0
ADAM23 WILD-TYPE 38 32 38 26 32

Figure S367.  Get High-res Image Gene #383: 'ADAM23 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'ADAM23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S3612.  Gene #383: 'ADAM23 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
ADAM23 MUTATED 9 13 5
ADAM23 WILD-TYPE 141 172 138
'ADAM23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.98

Table S3613.  Gene #383: 'ADAM23 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
ADAM23 MUTATED 4 6 9 0 3 1 4
ADAM23 WILD-TYPE 68 103 81 44 46 45 64
'ADAM23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.031

Table S3614.  Gene #383: 'ADAM23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
ADAM23 MUTATED 1 17 9
ADAM23 WILD-TYPE 174 194 81

Figure S368.  Get High-res Image Gene #383: 'ADAM23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ADAM23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0409 (Fisher's exact test), Q value = 0.58

Table S3615.  Gene #383: 'ADAM23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
ADAM23 MUTATED 0 13 6 8
ADAM23 WILD-TYPE 70 173 125 81

Figure S369.  Get High-res Image Gene #383: 'ADAM23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ADAM23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S3616.  Gene #383: 'ADAM23 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
ADAM23 MUTATED 8 11 7
ADAM23 WILD-TYPE 133 171 82
'ADAM23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.024 (Fisher's exact test), Q value = 0.49

Table S3617.  Gene #383: 'ADAM23 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
ADAM23 MUTATED 1 20 5
ADAM23 WILD-TYPE 93 213 80

Figure S370.  Get High-res Image Gene #383: 'ADAM23 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CHD8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S3618.  Gene #384: 'CHD8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 5 7 5 3
CHD8 MUTATED 1 0 1 1
CHD8 WILD-TYPE 4 7 4 2
'CHD8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0723 (Fisher's exact test), Q value = 0.65

Table S3619.  Gene #384: 'CHD8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 7 9 4
CHD8 MUTATED 1 0 2
CHD8 WILD-TYPE 6 9 2
'CHD8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.989 (Fisher's exact test), Q value = 1

Table S3620.  Gene #384: 'CHD8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
CHD8 MUTATED 3 11 4 6
CHD8 WILD-TYPE 62 199 68 125
'CHD8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S3621.  Gene #384: 'CHD8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
CHD8 MUTATED 7 8 5
CHD8 WILD-TYPE 124 130 156
'CHD8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S3622.  Gene #384: 'CHD8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
CHD8 MUTATED 3 2 3
CHD8 WILD-TYPE 39 69 60
'CHD8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S3623.  Gene #384: 'CHD8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
CHD8 MUTATED 0 2 3 1 2
CHD8 WILD-TYPE 39 30 40 29 30
'CHD8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.97

Table S3624.  Gene #384: 'CHD8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
CHD8 MUTATED 6 13 5
CHD8 WILD-TYPE 144 172 138
'CHD8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S3625.  Gene #384: 'CHD8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
CHD8 MUTATED 2 7 7 2 2 1 3
CHD8 WILD-TYPE 70 102 83 42 47 45 65
'CHD8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.98

Table S3626.  Gene #384: 'CHD8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
CHD8 MUTATED 11 11 2
CHD8 WILD-TYPE 164 200 88
'CHD8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S3627.  Gene #384: 'CHD8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
CHD8 MUTATED 4 7 9 4
CHD8 WILD-TYPE 66 179 122 85
'CHD8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S3628.  Gene #384: 'CHD8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
CHD8 MUTATED 6 10 4
CHD8 WILD-TYPE 135 172 85
'CHD8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S3629.  Gene #384: 'CHD8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
CHD8 MUTATED 3 14 3
CHD8 WILD-TYPE 91 219 82
'TBC1D14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S3630.  Gene #385: 'TBC1D14 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
TBC1D14 MUTATED 1 3 1 3
TBC1D14 WILD-TYPE 64 207 71 128
'TBC1D14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S3631.  Gene #385: 'TBC1D14 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
TBC1D14 MUTATED 1 3 4
TBC1D14 WILD-TYPE 130 135 157
'TBC1D14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S3632.  Gene #385: 'TBC1D14 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
TBC1D14 MUTATED 2 4 2
TBC1D14 WILD-TYPE 148 181 141
'TBC1D14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.76

Table S3633.  Gene #385: 'TBC1D14 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
TBC1D14 MUTATED 0 1 4 1 2 0 0
TBC1D14 WILD-TYPE 72 108 86 43 47 46 68
'TBC1D14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S3634.  Gene #385: 'TBC1D14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
TBC1D14 MUTATED 2 4 2
TBC1D14 WILD-TYPE 173 207 88
'TBC1D14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.73

Table S3635.  Gene #385: 'TBC1D14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
TBC1D14 MUTATED 1 6 0 1
TBC1D14 WILD-TYPE 69 180 131 88
'TBC1D14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.98

Table S3636.  Gene #385: 'TBC1D14 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
TBC1D14 MUTATED 1 4 3
TBC1D14 WILD-TYPE 140 178 86
'TBC1D14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S3637.  Gene #385: 'TBC1D14 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
TBC1D14 MUTATED 1 6 1
TBC1D14 WILD-TYPE 93 227 84
'GPR128 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S3638.  Gene #386: 'GPR128 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
GPR128 MUTATED 4 7 2 4
GPR128 WILD-TYPE 61 203 70 127
'GPR128 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0728 (Fisher's exact test), Q value = 0.65

Table S3639.  Gene #386: 'GPR128 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
GPR128 MUTATED 2 4 11
GPR128 WILD-TYPE 129 134 150
'GPR128 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S3640.  Gene #386: 'GPR128 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
GPR128 MUTATED 1 3 3
GPR128 WILD-TYPE 41 68 60
'GPR128 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.91

Table S3641.  Gene #386: 'GPR128 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
GPR128 MUTATED 0 2 3 0 2
GPR128 WILD-TYPE 39 30 40 30 30
'GPR128 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0461 (Fisher's exact test), Q value = 0.61

Table S3642.  Gene #386: 'GPR128 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
GPR128 MUTATED 1 9 7
GPR128 WILD-TYPE 149 176 136

Figure S371.  Get High-res Image Gene #386: 'GPR128 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GPR128 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S3643.  Gene #386: 'GPR128 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
GPR128 MUTATED 0 6 4 2 2 2 1
GPR128 WILD-TYPE 72 103 86 42 47 44 67
'GPR128 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S3644.  Gene #386: 'GPR128 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
GPR128 MUTATED 4 10 3
GPR128 WILD-TYPE 171 201 87
'GPR128 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0137 (Fisher's exact test), Q value = 0.37

Table S3645.  Gene #386: 'GPR128 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
GPR128 MUTATED 3 8 0 6
GPR128 WILD-TYPE 67 178 131 83

Figure S372.  Get High-res Image Gene #386: 'GPR128 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GPR128 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S3646.  Gene #386: 'GPR128 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
GPR128 MUTATED 3 7 5
GPR128 WILD-TYPE 138 175 84
'GPR128 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S3647.  Gene #386: 'GPR128 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
GPR128 MUTATED 2 10 3
GPR128 WILD-TYPE 92 223 82
'RPL6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.88

Table S3648.  Gene #387: 'RPL6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
RPL6 MUTATED 0 0 1 2
RPL6 WILD-TYPE 65 210 71 129
'RPL6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.84

Table S3649.  Gene #387: 'RPL6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
RPL6 MUTATED 2 1 0
RPL6 WILD-TYPE 129 137 161
'RPL6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3650.  Gene #387: 'RPL6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
RPL6 MUTATED 1 1 1
RPL6 WILD-TYPE 149 184 142
'RPL6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S3651.  Gene #387: 'RPL6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
RPL6 MUTATED 1 1 0 0 0 1 0
RPL6 WILD-TYPE 71 108 90 44 49 45 68
'RPL6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.78

Table S3652.  Gene #387: 'RPL6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
RPL6 MUTATED 3 0 0
RPL6 WILD-TYPE 172 211 90
'RPL6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.73

Table S3653.  Gene #387: 'RPL6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
RPL6 MUTATED 2 1 0 0
RPL6 WILD-TYPE 68 185 131 89
'RPL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S3654.  Gene #387: 'RPL6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
RPL6 MUTATED 2 1 0
RPL6 WILD-TYPE 139 181 89
'RPL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0479 (Fisher's exact test), Q value = 0.62

Table S3655.  Gene #387: 'RPL6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
RPL6 MUTATED 1 0 2
RPL6 WILD-TYPE 93 233 83

Figure S373.  Get High-res Image Gene #387: 'RPL6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FRZB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0578 (Fisher's exact test), Q value = 0.62

Table S3656.  Gene #388: 'FRZB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
FRZB MUTATED 3 1 1 4
FRZB WILD-TYPE 62 209 71 127
'FRZB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.73

Table S3657.  Gene #388: 'FRZB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
FRZB MUTATED 0 3 5
FRZB WILD-TYPE 131 135 156
'FRZB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S3658.  Gene #388: 'FRZB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
FRZB MUTATED 2 3 4
FRZB WILD-TYPE 148 182 139
'FRZB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S3659.  Gene #388: 'FRZB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
FRZB MUTATED 1 3 1 2 1 0 1
FRZB WILD-TYPE 71 106 89 42 48 46 67
'FRZB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S3660.  Gene #388: 'FRZB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
FRZB MUTATED 2 5 1
FRZB WILD-TYPE 173 206 89
'FRZB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.83

Table S3661.  Gene #388: 'FRZB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
FRZB MUTATED 2 5 0 1
FRZB WILD-TYPE 68 181 131 88
'FRZB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S3662.  Gene #388: 'FRZB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
FRZB MUTATED 1 5 1
FRZB WILD-TYPE 140 177 88
'FRZB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S3663.  Gene #388: 'FRZB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
FRZB MUTATED 3 3 1
FRZB WILD-TYPE 91 230 84
'USP34 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S3664.  Gene #389: 'USP34 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
USP34 MUTATED 2 9 2 10
USP34 WILD-TYPE 63 201 70 121
'USP34 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.89

Table S3665.  Gene #389: 'USP34 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
USP34 MUTATED 3 8 10
USP34 WILD-TYPE 128 130 151
'USP34 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S3666.  Gene #389: 'USP34 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
USP34 MUTATED 4 4 3
USP34 WILD-TYPE 38 67 60
'USP34 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S3667.  Gene #389: 'USP34 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
USP34 MUTATED 2 2 1 2 4
USP34 WILD-TYPE 37 30 42 28 28
'USP34 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S3668.  Gene #389: 'USP34 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
USP34 MUTATED 5 10 8
USP34 WILD-TYPE 145 175 135
'USP34 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S3669.  Gene #389: 'USP34 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
USP34 MUTATED 3 5 8 1 2 2 2
USP34 WILD-TYPE 69 104 82 43 47 44 66
'USP34 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.95

Table S3670.  Gene #389: 'USP34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
USP34 MUTATED 6 14 3
USP34 WILD-TYPE 169 197 87
'USP34 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.88

Table S3671.  Gene #389: 'USP34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
USP34 MUTATED 2 9 4 8
USP34 WILD-TYPE 68 177 127 81
'USP34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S3672.  Gene #389: 'USP34 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
USP34 MUTATED 6 10 5
USP34 WILD-TYPE 135 172 84
'USP34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S3673.  Gene #389: 'USP34 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
USP34 MUTATED 3 14 4
USP34 WILD-TYPE 91 219 81
'LCK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S3674.  Gene #390: 'LCK MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
LCK MUTATED 2 4 1 5
LCK WILD-TYPE 63 206 71 126
'LCK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0678 (Fisher's exact test), Q value = 0.65

Table S3675.  Gene #390: 'LCK MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
LCK MUTATED 0 4 6
LCK WILD-TYPE 131 134 155
'LCK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S3676.  Gene #390: 'LCK MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
LCK MUTATED 0 2 3
LCK WILD-TYPE 42 69 60
'LCK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00965 (Fisher's exact test), Q value = 0.33

Table S3677.  Gene #390: 'LCK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
LCK MUTATED 1 4 0 0 0
LCK WILD-TYPE 38 28 43 30 32

Figure S374.  Get High-res Image Gene #390: 'LCK MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'LCK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.76

Table S3678.  Gene #390: 'LCK MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
LCK MUTATED 2 3 7
LCK WILD-TYPE 148 182 136
'LCK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.76

Table S3679.  Gene #390: 'LCK MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
LCK MUTATED 0 1 5 2 2 0 2
LCK WILD-TYPE 72 108 85 42 47 46 66
'LCK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00575 (Fisher's exact test), Q value = 0.27

Table S3680.  Gene #390: 'LCK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
LCK MUTATED 0 10 2
LCK WILD-TYPE 175 201 88

Figure S375.  Get High-res Image Gene #390: 'LCK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'LCK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.73

Table S3681.  Gene #390: 'LCK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
LCK MUTATED 0 7 1 4
LCK WILD-TYPE 70 179 130 85
'LCK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S3682.  Gene #390: 'LCK MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
LCK MUTATED 3 4 3
LCK WILD-TYPE 138 178 86
'LCK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S3683.  Gene #390: 'LCK MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
LCK MUTATED 2 7 1
LCK WILD-TYPE 92 226 84
'FN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S3684.  Gene #391: 'FN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
FN1 MUTATED 2 6 4 8
FN1 WILD-TYPE 63 204 68 123
'FN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S3685.  Gene #391: 'FN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
FN1 MUTATED 5 8 7
FN1 WILD-TYPE 126 130 154
'FN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S3686.  Gene #391: 'FN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 42 71 63
FN1 MUTATED 1 1 2
FN1 WILD-TYPE 41 70 61
'FN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0392 (Fisher's exact test), Q value = 0.58

Table S3687.  Gene #391: 'FN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 32 43 30 32
FN1 MUTATED 0 0 1 3 0
FN1 WILD-TYPE 39 32 42 27 32

Figure S376.  Get High-res Image Gene #391: 'FN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'FN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S3688.  Gene #391: 'FN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
FN1 MUTATED 7 10 4
FN1 WILD-TYPE 143 175 139
'FN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.81

Table S3689.  Gene #391: 'FN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
FN1 MUTATED 3 5 8 0 0 3 2
FN1 WILD-TYPE 69 104 82 44 49 43 66
'FN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S3690.  Gene #391: 'FN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
FN1 MUTATED 7 10 4
FN1 WILD-TYPE 168 201 86
'FN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S3691.  Gene #391: 'FN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
FN1 MUTATED 3 7 4 7
FN1 WILD-TYPE 67 179 127 82
'FN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S3692.  Gene #391: 'FN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
FN1 MUTATED 5 9 6
FN1 WILD-TYPE 136 173 83
'FN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S3693.  Gene #391: 'FN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
FN1 MUTATED 3 14 3
FN1 WILD-TYPE 91 219 82
'RUFY2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.73

Table S3694.  Gene #392: 'RUFY2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
RUFY2 MUTATED 1 1 3 3
RUFY2 WILD-TYPE 64 209 69 128
'RUFY2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.95

Table S3695.  Gene #392: 'RUFY2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 131 138 161
RUFY2 MUTATED 2 4 1
RUFY2 WILD-TYPE 129 134 160
'RUFY2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.99

Table S3696.  Gene #392: 'RUFY2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
RUFY2 MUTATED 1 5 2
RUFY2 WILD-TYPE 149 180 141
'RUFY2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.78

Table S3697.  Gene #392: 'RUFY2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
RUFY2 MUTATED 0 2 2 1 0 3 0
RUFY2 WILD-TYPE 72 107 88 43 49 43 68
'RUFY2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S3698.  Gene #392: 'RUFY2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 175 211 90
RUFY2 MUTATED 2 3 2
RUFY2 WILD-TYPE 173 208 88
'RUFY2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S3699.  Gene #392: 'RUFY2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 70 186 131 89
RUFY2 MUTATED 1 3 1 2
RUFY2 WILD-TYPE 69 183 130 87
'RUFY2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S3700.  Gene #392: 'RUFY2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 141 182 89
RUFY2 MUTATED 2 2 3
RUFY2 WILD-TYPE 139 180 86
'RUFY2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S3701.  Gene #392: 'RUFY2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 94 233 85
RUFY2 MUTATED 1 5 1
RUFY2 WILD-TYPE 93 228 84
'YIPF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.88

Table S3702.  Gene #393: 'YIPF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 210 72 131
YIPF1 MUTATED 0 0 1 2
YIPF1 WILD-TYPE 65 210 71 129
'YIPF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.73

Table S3703.  Gene #393: 'YIPF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 150 185 143
YIPF1 MUTATED 0 3 0
YIPF1 WILD-TYPE 150 182 143
'YIPF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S3704.  Gene #393: 'YIPF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 72 109 90 44 49 46 68
YIPF1 MUTATED 0 2 0 0 0 1 0
YIPF1 WILD-TYPE 72 107 90 44 49 45 68
Methods & Data
Input

  • Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline

  • Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LUAD-TP/15246506/transformed.cor.cli.txt

  • Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LUAD-TP/15111023/LUAD-TP.transferedmergedcluster.txt

  • Number of patients = 481

  • Number of significantly mutated genes = 393

  • Number of Molecular subtypes = 12

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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