name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme	callscheme_name	N_tot	nsil_tot	nnon_tot	rate_sil	rate_non
TCGA-05-4244-01A-01D-1105-08	263	247	16	199	6.083650e-02	1	exome+100bp flanks	34834024	43	190	1.234425e-06	5.454437e-06
TCGA-05-4249-01A-01D-1105-08	390	367	23	299	5.897436e-02	1	exome+100bp flanks	34834024	64	278	1.837284e-06	7.980703e-06
TCGA-05-4250-01A-01D-1105-08	422	401	21	310	4.976303e-02	1	exome+100bp flanks	34834024	86	293	2.468851e-06	8.411316e-06
TCGA-05-4382-01A-01D-1931-08	2240	2159	81	1712	3.616071e-02	1	exome+100bp flanks	34834024	423	1629	1.214330e-05	4.676462e-05
TCGA-05-4384-01A-01D-1753-08	178	164	14	127	7.865169e-02	1	exome+100bp flanks	34834024	36	122	1.033472e-06	3.502323e-06
TCGA-05-4389-01A-01D-1265-08	328	318	10	238	3.048780e-02	1	exome+100bp flanks	34834024	77	229	2.210482e-06	6.574032e-06
TCGA-05-4390-01A-02D-1753-08	678	655	23	517	3.392330e-02	1	exome+100bp flanks	34834024	137	487	3.932936e-06	1.398058e-05
TCGA-05-4395-01A-01D-1265-08	319	308	11	226	3.448276e-02	1	exome+100bp flanks	34834024	79	214	2.267898e-06	6.143419e-06
TCGA-05-4396-01A-21D-1855-08	581	568	13	425	2.237522e-02	0	coding only	34834024	136	402	3.904229e-06	1.154044e-05
TCGA-05-4397-01A-01D-1265-08	974	943	31	745	3.182752e-02	1	exome+100bp flanks	34834024	187	714	5.368315e-06	2.049720e-05
TCGA-05-4398-01A-01D-1265-08	962	926	36	704	3.742204e-02	1	exome+100bp flanks	34834024	214	678	6.143419e-06	1.946373e-05
TCGA-05-4402-01A-01D-1265-08	202	200	2	157	9.900990e-03	0	coding only	34834024	42	152	1.205718e-06	4.363550e-06
TCGA-05-4403-01A-01D-1265-08	169	162	7	124	4.142012e-02	1	exome+100bp flanks	34834024	37	119	1.062180e-06	3.416200e-06
TCGA-05-4405-01A-21D-1855-08	521	502	19	381	3.646833e-02	1	exome+100bp flanks	34834024	114	363	3.272662e-06	1.042085e-05
TCGA-05-4410-01A-21D-1855-08	1366	1326	40	1022	2.928258e-02	0	coding only	34834024	294	962	8.440024e-06	2.761668e-05
TCGA-05-4415-01A-22D-1855-08	242	235	7	181	2.892562e-02	0	coding only	34834024	50	171	1.435378e-06	4.908994e-06
TCGA-05-4417-01A-22D-1855-08	353	342	11	268	3.116147e-02	1	exome+100bp flanks	34834024	71	251	2.038237e-06	7.205599e-06
TCGA-05-4418-01A-01D-1265-08	332	317	15	254	4.518072e-02	1	exome+100bp flanks	34834024	61	249	1.751161e-06	7.148184e-06
TCGA-05-4420-01A-01D-1265-08	374	357	17	274	4.545455e-02	1	exome+100bp flanks	34834024	81	260	2.325313e-06	7.463967e-06
TCGA-05-4422-01A-01D-1265-08	63	60	3	46	4.761905e-02	1	exome+100bp flanks	34834024	13	46	3.731983e-07	1.320548e-06
TCGA-05-4424-01A-22D-1855-08	920	889	31	700	3.369565e-02	1	exome+100bp flanks	34834024	179	672	5.138654e-06	1.929148e-05
TCGA-05-4425-01A-01D-1753-08	48	48	0	34	0	1	exome+100bp flanks	34834024	14	34	4.019059e-07	9.760572e-07
TCGA-05-4426-01A-01D-1265-08	62	57	5	46	8.064516e-02	1	exome+100bp flanks	34834024	10	44	2.870756e-07	1.263133e-06
TCGA-05-4427-01A-21D-1855-08	1244	1206	38	966	3.054662e-02	1	exome+100bp flanks	34834024	230	912	6.602740e-06	2.618130e-05
TCGA-05-4430-01A-02D-1265-08	364	351	13	278	3.571429e-02	1	exome+100bp flanks	34834024	71	253	2.038237e-06	7.263014e-06
TCGA-05-4432-01A-01D-1265-08	827	804	23	614	2.781137e-02	0	coding only	34834024	184	584	5.282192e-06	1.676522e-05
TCGA-05-4433-01A-22D-1855-08	57	51	6	39	1.052632e-01	1	exome+100bp flanks	34834024	12	36	3.444908e-07	1.033472e-06
TCGA-05-4434-01A-01D-1265-08	65	65	0	50	0	0	coding only	34834024	15	47	4.306135e-07	1.349256e-06
TCGA-05-5420-01A-01D-1625-08	129	124	5	94	3.875969e-02	1	exome+100bp flanks	34834024	28	84	8.038118e-07	2.411435e-06
TCGA-05-5423-01A-01D-1625-08	181	174	7	137	3.867403e-02	1	exome+100bp flanks	34834024	37	134	1.062180e-06	3.846814e-06
TCGA-05-5425-01A-02D-1625-08	744	728	16	566	2.150538e-02	0	coding only	34834024	155	540	4.449673e-06	1.550208e-05
TCGA-05-5428-01A-01D-1625-08	464	447	17	341	3.663793e-02	1	exome+100bp flanks	34834024	101	329	2.899464e-06	9.444789e-06
TCGA-05-5429-01A-01D-1625-08	48	45	3	35	6.250000e-02	1	exome+100bp flanks	34834024	8	32	2.296605e-07	9.186421e-07
TCGA-05-5715-01A-01D-1625-08	144	140	4	107	2.777778e-02	0	coding only	34834024	33	102	9.473496e-07	2.928172e-06
TCGA-17-Z000-01A-01W-0746-08	378	165	213	133	5.634921e-01	2	all capture (no interval list)	65505363	32	125	4.885096e-07	1.908241e-06
TCGA-17-Z001-01A-01W-0746-08	435	239	196	184	4.505747e-01	2	all capture (no interval list)	65505363	52	171	7.938281e-07	2.610473e-06
TCGA-17-Z002-01A-01W-0746-08	288	42	246	38	8.541667e-01	2	all capture (no interval list)	65505363	3	34	4.579778e-08	5.190415e-07
TCGA-17-Z003-01A-01W-0746-08	547	347	200	265	3.656307e-01	2	all capture (no interval list)	65505363	81	254	1.236540e-06	3.877545e-06
TCGA-17-Z004-01A-01W-0746-08	147	40	107	28	7.278912e-01	2	all capture (no interval list)	65505363	11	26	1.679252e-07	3.969141e-07
TCGA-17-Z005-01A-01W-0746-08	301	123	178	87	5.913621e-01	2	all capture (no interval list)	65505363	34	85	5.190415e-07	1.297604e-06
TCGA-17-Z007-01A-01W-0746-08	296	95	201	70	6.790541e-01	2	all capture (no interval list)	65505363	23	63	3.511163e-07	9.617533e-07
TCGA-17-Z009-01A-01W-0746-08	311	95	216	78	6.945338e-01	2	all capture (no interval list)	65505363	16	74	2.442548e-07	1.129678e-06
TCGA-17-Z010-01A-01W-0746-08	494	348	146	256	2.955466e-01	1	exome+100bp flanks	34834024	88	237	2.526266e-06	6.803693e-06
TCGA-17-Z011-01A-01W-0746-08	314	150	164	117	5.222930e-01	2	all capture (no interval list)	65505363	31	102	4.732437e-07	1.557124e-06
TCGA-17-Z013-01A-01W-0746-08	280	76	204	61	7.285714e-01	2	all capture (no interval list)	65505363	15	60	2.289889e-07	9.159555e-07
TCGA-17-Z014-01A-01W-0746-08	640	436	204	329	3.187500e-01	2	all capture (no interval list)	65505363	102	309	1.557124e-06	4.717171e-06
TCGA-17-Z015-01A-01W-0746-08	866	613	253	500	2.921478e-01	1	exome+100bp flanks	34834024	103	463	2.956879e-06	1.329160e-05
TCGA-17-Z016-01A-01W-0746-08	557	346	211	274	3.788151e-01	2	all capture (no interval list)	65505363	70	260	1.068615e-06	3.969141e-06
TCGA-17-Z017-01A-01W-0746-08	505	249	256	202	5.069307e-01	2	all capture (no interval list)	65505363	46	188	7.022326e-07	2.869994e-06
TCGA-17-Z018-01A-01W-0746-08	493	287	206	225	4.178499e-01	2	all capture (no interval list)	65505363	59	209	9.006896e-07	3.190578e-06
TCGA-17-Z019-01A-01W-0746-08	264	8	256	6	9.696970e-01	2	all capture (no interval list)	65505363	2	5	3.053185e-08	7.632963e-08
TCGA-17-Z020-01A-01W-0746-08	422	163	259	125	6.137441e-01	2	all capture (no interval list)	65505363	34	116	5.190415e-07	1.770847e-06
TCGA-17-Z021-01A-01W-0746-08	493	233	260	172	5.273834e-01	2	all capture (no interval list)	65505363	59	164	9.006896e-07	2.503612e-06
TCGA-17-Z022-01A-01W-0746-08	1679	1406	273	1076	1.625968e-01	1	exome+100bp flanks	34834024	307	1016	8.813222e-06	2.916689e-05
TCGA-17-Z023-01A-01W-0746-08	664	481	183	386	2.756024e-01	1	exome+100bp flanks	34834024	93	362	2.669804e-06	1.039214e-05
TCGA-17-Z025-01A-01W-0746-08	470	296	174	231	3.702128e-01	2	all capture (no interval list)	65505363	62	219	9.464874e-07	3.343238e-06
TCGA-17-Z026-01A-01W-0746-08	1463	1245	218	941	1.490089e-01	1	exome+100bp flanks	34834024	286	893	8.210364e-06	2.563586e-05
TCGA-17-Z027-01A-01W-0746-08	276	124	152	97	5.507246e-01	2	all capture (no interval list)	65505363	26	90	3.969141e-07	1.373933e-06
TCGA-17-Z028-01A-01W-0746-08	766	582	184	459	2.402089e-01	1	exome+100bp flanks	34834024	115	429	3.301370e-06	1.231555e-05
TCGA-17-Z030-01A-01W-0746-08	955	696	259	542	2.712042e-01	1	exome+100bp flanks	34834024	146	516	4.191304e-06	1.481310e-05
TCGA-17-Z031-01A-01W-0746-08	3191	2626	565	2074	1.770605e-01	1	exome+100bp flanks	34834024	527	1964	1.512889e-05	5.638166e-05
TCGA-17-Z032-01A-01W-0746-08	629	174	455	125	7.233704e-01	2	all capture (no interval list)	65505363	47	119	7.174985e-07	1.816645e-06
TCGA-17-Z033-01A-01W-0746-08	434	237	197	179	4.539171e-01	2	all capture (no interval list)	65505363	55	163	8.396259e-07	2.488346e-06
TCGA-17-Z036-01A-01W-0746-08	322	93	229	74	7.111801e-01	2	all capture (no interval list)	65505363	19	72	2.900526e-07	1.099147e-06
TCGA-17-Z037-01A-01W-0746-08	298	177	121	135	4.060403e-01	2	all capture (no interval list)	65505363	40	129	6.106370e-07	1.969304e-06
TCGA-17-Z041-01A-01W-0746-08	593	100	493	78	8.313659e-01	2	all capture (no interval list)	65505363	18	70	2.747867e-07	1.068615e-06
TCGA-17-Z042-01A-01W-0746-08	675	540	135	420	2.000000e-01	1	exome+100bp flanks	34834024	110	393	3.157832e-06	1.128207e-05
TCGA-17-Z043-01A-01W-0746-08	405	246	159	183	3.925926e-01	2	all capture (no interval list)	65505363	60	168	9.159555e-07	2.564676e-06
TCGA-17-Z044-01A-01W-0746-08	318	142	176	102	5.534591e-01	2	all capture (no interval list)	65505363	36	95	5.495733e-07	1.450263e-06
TCGA-17-Z045-01A-01W-0746-08	917	752	165	585	1.799346e-01	1	exome+100bp flanks	34834024	160	557	4.593210e-06	1.599011e-05
TCGA-17-Z047-01A-01W-0747-08	52	48	4	38	7.692308e-02	1	exome+100bp flanks	34834024	8	36	2.296605e-07	1.033472e-06
TCGA-17-Z048-01A-01W-0746-08	77	68	9	54	1.168831e-01	1	exome+100bp flanks	34834024	14	49	4.019059e-07	1.406671e-06
TCGA-17-Z049-01A-01W-0746-08	588	564	24	435	4.081633e-02	1	exome+100bp flanks	34834024	121	419	3.473615e-06	1.202847e-05
TCGA-17-Z050-01A-01W-0747-08	277	264	13	197	4.693141e-02	1	exome+100bp flanks	34834024	67	187	1.923407e-06	5.368315e-06
TCGA-17-Z051-01A-01W-0747-08	169	160	9	126	5.325444e-02	1	exome+100bp flanks	34834024	33	120	9.473496e-07	3.444908e-06
TCGA-17-Z052-01A-01W-0747-08	196	192	4	148	2.040816e-02	0	coding only	34834024	42	143	1.205718e-06	4.105182e-06
TCGA-17-Z053-01A-01W-0747-08	354	332	22	251	6.214689e-02	1	exome+100bp flanks	34834024	76	246	2.181775e-06	7.062061e-06
TCGA-17-Z054-01A-01W-0747-08	32	28	4	23	1.250000e-01	1	exome+100bp flanks	34834024	5	21	1.435378e-07	6.028589e-07
TCGA-17-Z055-01A-01W-0747-08	1117	1085	32	868	2.864816e-02	0	coding only	34834024	207	828	5.942466e-06	2.376986e-05
TCGA-17-Z056-01A-01W-0747-08	795	777	18	627	2.264151e-02	0	coding only	34834024	143	595	4.105182e-06	1.708100e-05
TCGA-17-Z057-01A-01W-0747-08	539	525	14	405	2.597403e-02	0	coding only	34834024	113	389	3.243955e-06	1.116724e-05
TCGA-17-Z058-01A-01W-0747-08	120	114	6	92	5.000000e-02	1	exome+100bp flanks	34834024	22	90	6.315664e-07	2.583681e-06
TCGA-17-Z059-01A-01W-0747-08	204	197	7	153	3.431373e-02	1	exome+100bp flanks	34834024	43	148	1.234425e-06	4.248720e-06
TCGA-17-Z060-01A-01W-0747-08	277	262	15	201	5.415162e-02	1	exome+100bp flanks	34834024	59	194	1.693746e-06	5.569268e-06
TCGA-17-Z061-01A-01W-0747-08	233	222	11	163	4.721030e-02	1	exome+100bp flanks	34834024	57	158	1.636331e-06	4.535795e-06
TCGA-17-Z062-01A-01W-0747-08	576	560	16	447	2.777778e-02	0	coding only	34834024	109	426	3.129125e-06	1.222942e-05
TCGA-35-3615-01A-01D-1040-01	152	141	11	111	7.236842e-02	1	exome+100bp flanks	34834024	29	105	8.325194e-07	3.014294e-06
TCGA-35-3615-01A-01W-0928-08	187	170	17	141	9.090909e-02	1	exome+100bp flanks	34834024	27	129	7.751042e-07	3.703276e-06
TCGA-35-4122-01A-01D-1105-08	411	399	12	308	2.919708e-02	0	coding only	34834024	90	290	2.583681e-06	8.325194e-06
TCGA-35-4123-01A-01D-1105-08	353	342	11	246	3.116147e-02	1	exome+100bp flanks	34834024	92	237	2.641096e-06	6.803693e-06
TCGA-35-5375-01A-01D-1625-08	507	487	20	386	3.944773e-02	1	exome+100bp flanks	34834024	98	365	2.813341e-06	1.047826e-05
TCGA-38-4625-01A-01D-1553-08	697	665	32	519	4.591105e-02	1	exome+100bp flanks	34834024	141	493	4.047767e-06	1.415283e-05
TCGA-38-4626-01A-01D-1553-08	374	361	13	272	3.475936e-02	1	exome+100bp flanks	34834024	87	258	2.497558e-06	7.406552e-06
TCGA-38-4627-01A-01D-1553-08	37	37	0	30	0	1	exome+100bp flanks	34834024	7	29	2.009530e-07	8.325194e-07
TCGA-38-4628-01A-01D-1265-08	166	162	4	130	2.409639e-02	0	coding only	34834024	31	119	8.899345e-07	3.416200e-06
TCGA-38-4629-01A-02D-1265-08	338	325	13	257	3.846154e-02	1	exome+100bp flanks	34834024	66	240	1.894699e-06	6.889816e-06
TCGA-38-4630-01A-01D-1265-08	163	154	9	115	5.521472e-02	1	exome+100bp flanks	34834024	36	111	1.033472e-06	3.186540e-06
TCGA-38-4631-01A-01D-1753-08	921	894	27	695	2.931596e-02	0	coding only	34834024	190	666	5.454437e-06	1.911924e-05
TCGA-38-4632-01A-01D-1753-08	638	616	22	504	3.448276e-02	1	exome+100bp flanks	34834024	110	474	3.157832e-06	1.360739e-05
TCGA-38-6178-01A-11D-1753-08	73	71	2	51	2.739726e-02	0	coding only	34834024	20	50	5.741513e-07	1.435378e-06
TCGA-38-7271-01A-11D-2036-08	126	123	3	101	2.380952e-02	0	coding only	34834024	21	100	6.028589e-07	2.870756e-06
TCGA-38-A44F-01A-11D-A24D-08	25	23	2	15	8.000000e-02	1	exome+100bp flanks	34834024	8	11	2.296605e-07	3.157832e-07
TCGA-44-2655-01A-01D-1553-08	245	232	13	177	5.306122e-02	1	exome+100bp flanks	34834024	55	169	1.578916e-06	4.851578e-06
TCGA-44-2655-01A-01W-0928-08	254	242	12	183	4.724409e-02	1	exome+100bp flanks	34834024	59	175	1.693746e-06	5.023824e-06
TCGA-44-2656-01A-02D-0969-08	1112	1061	51	826	4.586331e-02	1	exome+100bp flanks	34834024	220	797	6.315664e-06	2.287993e-05
TCGA-44-2656-01A-02W-0928-08	1022	971	51	771	4.990215e-02	1	exome+100bp flanks	34834024	186	744	5.339607e-06	2.135843e-05
TCGA-44-2657-01A-01D-1105-08	500	491	9	371	1.800000e-02	0	coding only	34834024	115	354	3.301370e-06	1.016248e-05
TCGA-44-2659-01A-01D-0969-08	519	499	20	401	3.853565e-02	1	exome+100bp flanks	34834024	93	384	2.669804e-06	1.102370e-05
TCGA-44-2659-01A-01W-0928-08	539	515	24	424	4.452690e-02	1	exome+100bp flanks	34834024	87	405	2.497558e-06	1.162656e-05
TCGA-44-2661-01A-01D-1105-08	71	68	3	47	4.225352e-02	1	exome+100bp flanks	34834024	19	46	5.454437e-07	1.320548e-06
TCGA-44-2662-01A-01D-0969-08	271	260	11	194	4.059041e-02	1	exome+100bp flanks	34834024	61	187	1.751161e-06	5.368315e-06
TCGA-44-2662-01A-01W-0928-08	285	264	21	200	7.368421e-02	1	exome+100bp flanks	34834024	59	191	1.693746e-06	5.483145e-06
TCGA-44-2665-01A-01D-1040-01	62	59	3	42	4.838710e-02	1	exome+100bp flanks	34834024	16	38	4.593210e-07	1.090887e-06
TCGA-44-2665-01A-01W-0928-08	142	126	16	106	1.126761e-01	1	exome+100bp flanks	34834024	18	101	5.167362e-07	2.899464e-06
TCGA-44-2666-01A-01D-1489-08	71	54	17	47	2.394366e-01	1	exome+100bp flanks	34834024	7	45	2.009530e-07	1.291840e-06
TCGA-44-2666-01A-01W-0928-08	93	72	21	63	2.258065e-01	1	exome+100bp flanks	34834024	8	59	2.296605e-07	1.693746e-06
TCGA-44-2668-01A-01D-0969-08	487	468	19	349	3.901437e-02	1	exome+100bp flanks	34834024	110	329	3.157832e-06	9.444789e-06
TCGA-44-2668-01A-01W-0928-08	483	463	20	353	4.140787e-02	1	exome+100bp flanks	34834024	104	334	2.985587e-06	9.588327e-06
TCGA-44-3396-01A-01D-1553-08	268	261	7	208	2.611940e-02	0	coding only	34834024	48	191	1.377963e-06	5.483145e-06
TCGA-44-3398-01A-01D-1105-08	286	277	9	213	3.146853e-02	1	exome+100bp flanks	34834024	62	202	1.779869e-06	5.798928e-06
TCGA-44-3918-01A-01D-1105-08	1162	1124	38	895	3.270224e-02	1	exome+100bp flanks	34834024	223	851	6.401787e-06	2.443014e-05
TCGA-44-3919-01A-02D-1105-08	117	107	10	76	8.547009e-02	1	exome+100bp flanks	34834024	31	73	8.899345e-07	2.095652e-06
TCGA-44-3919-01A-02D-1458-08	113	104	9	80	7.964602e-02	1	exome+100bp flanks	34834024	22	76	6.315664e-07	2.181775e-06
TCGA-44-4112-01A-01D-1105-08	527	502	25	392	4.743833e-02	1	exome+100bp flanks	34834024	102	369	2.928172e-06	1.059309e-05
TCGA-44-4112-01A-01D-1458-08	532	505	27	395	5.075188e-02	1	exome+100bp flanks	34834024	102	369	2.928172e-06	1.059309e-05
TCGA-44-5643-01A-01D-1625-08	168	158	10	117	5.952381e-02	1	exome+100bp flanks	34834024	38	110	1.090887e-06	3.157832e-06
TCGA-44-5644-01A-21D-2036-08	1146	1118	28	885	2.443281e-02	0	coding only	34834024	221	837	6.344372e-06	2.402823e-05
TCGA-44-5645-01A-01D-1625-08	50	48	2	40	4.000000e-02	1	exome+100bp flanks	34834024	8	38	2.296605e-07	1.090887e-06
TCGA-44-6144-01A-11D-1753-08	261	255	6	192	2.298851e-02	0	coding only	34834024	61	183	1.751161e-06	5.253484e-06
TCGA-44-6145-01A-11D-1753-08	388	368	20	292	5.154639e-02	1	exome+100bp flanks	34834024	69	273	1.980822e-06	7.837165e-06
TCGA-44-6146-01A-11D-1753-08	51	50	1	38	1.960784e-02	0	coding only	34834024	12	36	3.444908e-07	1.033472e-06
TCGA-44-6147-01A-11D-1753-08	257	244	13	173	5.058366e-02	1	exome+100bp flanks	34834024	67	162	1.923407e-06	4.650625e-06
TCGA-44-6148-01A-11D-1753-08	15	12	3	8	2.000000e-01	1	exome+100bp flanks	34834024	3	7	8.612269e-08	2.009530e-07
TCGA-44-6774-01A-21D-1855-08	377	366	11	281	2.917772e-02	0	coding only	34834024	79	262	2.267898e-06	7.521382e-06
TCGA-44-6775-01A-11D-1855-08	100	92	8	72	8.000000e-02	1	exome+100bp flanks	34834024	19	69	5.454437e-07	1.980822e-06
TCGA-44-6776-01A-11D-1855-08	256	238	18	188	7.031250e-02	1	exome+100bp flanks	34834024	46	175	1.320548e-06	5.023824e-06
TCGA-44-6777-01A-11D-1855-08	481	461	20	360	4.158004e-02	1	exome+100bp flanks	34834024	99	334	2.842049e-06	9.588327e-06
TCGA-44-6778-01A-11D-1855-08	477	459	18	354	3.773585e-02	1	exome+100bp flanks	34834024	103	338	2.956879e-06	9.703157e-06
TCGA-44-6779-01A-11D-1855-08	137	120	17	93	1.240876e-01	1	exome+100bp flanks	34834024	25	91	7.176891e-07	2.612388e-06
TCGA-44-7659-01A-11D-2063-08	191	177	14	138	7.329843e-02	1	exome+100bp flanks	34834024	35	133	1.004765e-06	3.818106e-06
TCGA-44-7660-01A-11D-2063-08	467	450	17	348	3.640257e-02	1	exome+100bp flanks	34834024	97	329	2.784634e-06	9.444789e-06
TCGA-44-7661-01A-11D-2063-08	344	334	10	260	2.906977e-02	0	coding only	34834024	71	250	2.038237e-06	7.176891e-06
TCGA-44-7662-01A-11D-2063-08	682	668	14	535	2.052786e-02	0	coding only	34834024	126	515	3.617153e-06	1.478440e-05
TCGA-44-7667-01A-31D-2063-08	560	546	14	429	2.500000e-02	0	coding only	34834024	110	403	3.157832e-06	1.156915e-05
TCGA-44-7669-01A-21D-2063-08	556	533	23	424	4.136691e-02	1	exome+100bp flanks	34834024	105	410	3.014294e-06	1.177010e-05
TCGA-44-7670-01A-11D-2063-08	1297	1256	41	982	3.161141e-02	1	exome+100bp flanks	34834024	265	931	7.607505e-06	2.672674e-05
TCGA-44-7671-01A-11D-2063-08	283	267	16	204	5.653710e-02	1	exome+100bp flanks	34834024	61	193	1.751161e-06	5.540560e-06
TCGA-44-7672-01A-11D-2063-08	212	201	11	154	5.188679e-02	1	exome+100bp flanks	34834024	42	150	1.205718e-06	4.306135e-06
TCGA-44-8117-01A-11D-2238-08	913	876	37	676	4.052574e-02	1	exome+100bp flanks	34834024	189	643	5.425730e-06	1.845896e-05
TCGA-44-8119-01A-11D-2238-08	765	729	36	572	4.705882e-02	1	exome+100bp flanks	34834024	151	544	4.334842e-06	1.561692e-05
TCGA-44-8120-01A-11D-2238-08	745	720	25	550	3.355705e-02	1	exome+100bp flanks	34834024	165	516	4.736748e-06	1.481310e-05
TCGA-44-A479-01A-31D-A24D-08	369	356	13	281	3.523035e-02	1	exome+100bp flanks	34834024	71	263	2.038237e-06	7.550090e-06
TCGA-44-A47A-01A-21D-A24D-08	271	261	10	215	3.690037e-02	1	exome+100bp flanks	34834024	46	206	1.320548e-06	5.913758e-06
TCGA-44-A47B-01A-11D-A24D-08	60	58	2	44	3.333333e-02	1	exome+100bp flanks	34834024	14	42	4.019059e-07	1.205718e-06
TCGA-44-A47F-01A-11D-A24D-08	116	112	4	80	3.448276e-02	1	exome+100bp flanks	34834024	31	77	8.899345e-07	2.210482e-06
TCGA-44-A47G-01A-21D-A24D-08	101	97	4	79	3.960396e-02	1	exome+100bp flanks	34834024	18	76	5.167362e-07	2.181775e-06
TCGA-44-A4SS-01A-11D-A24P-08	570	556	14	450	2.456140e-02	0	coding only	34834024	102	431	2.928172e-06	1.237296e-05
TCGA-44-A4SU-01A-11D-A24P-08	191	181	10	135	5.235602e-02	1	exome+100bp flanks	34834024	45	130	1.291840e-06	3.731983e-06
TCGA-49-4486-01A-01D-1265-08	328	316	12	235	3.658537e-02	1	exome+100bp flanks	34834024	80	226	2.296605e-06	6.487910e-06
TCGA-49-4487-01A-21D-1855-08	471	461	10	356	2.123142e-02	0	coding only	34834024	99	342	2.842049e-06	9.817987e-06
TCGA-49-4488-01A-01D-1753-08	348	337	11	265	3.160920e-02	1	exome+100bp flanks	34834024	69	259	1.980822e-06	7.435259e-06
TCGA-49-4490-01A-21D-1855-08	85	84	1	61	1.176471e-02	0	coding only	34834024	23	59	6.602740e-07	1.693746e-06
TCGA-49-4494-01A-01D-1265-08	232	226	6	174	2.586207e-02	0	coding only	34834024	49	168	1.406671e-06	4.822871e-06
TCGA-49-4501-01A-01D-1265-08	102	93	9	66	8.823529e-02	1	exome+100bp flanks	34834024	26	64	7.463967e-07	1.837284e-06
TCGA-49-4505-01A-01D-1931-08	275	260	15	196	5.454545e-02	1	exome+100bp flanks	34834024	61	189	1.751161e-06	5.425730e-06
TCGA-49-4506-01A-01D-1265-08	167	164	3	133	1.796407e-02	0	coding only	34834024	31	126	8.899345e-07	3.617153e-06
TCGA-49-4507-01A-01D-1265-08	261	249	12	193	4.597701e-02	1	exome+100bp flanks	34834024	54	183	1.550208e-06	5.253484e-06
TCGA-49-4510-01A-01D-1265-08	62	59	3	45	4.838710e-02	1	exome+100bp flanks	34834024	13	45	3.731983e-07	1.291840e-06
TCGA-49-4512-01A-21D-1855-08	70	64	6	49	8.571429e-02	1	exome+100bp flanks	34834024	15	47	4.306135e-07	1.349256e-06
TCGA-49-4514-01A-21D-1855-08	392	385	7	290	1.785714e-02	0	coding only	34834024	95	276	2.727219e-06	7.923288e-06
TCGA-49-6742-01A-11D-1855-08	351	339	12	251	3.418803e-02	1	exome+100bp flanks	34834024	81	244	2.325313e-06	7.004646e-06
TCGA-49-6743-01A-11D-1855-08	924	901	23	674	2.489177e-02	0	coding only	34834024	222	643	6.373079e-06	1.845896e-05
TCGA-49-6744-01A-11D-1855-08	316	308	8	245	2.531646e-02	0	coding only	34834024	61	232	1.751161e-06	6.660155e-06
TCGA-49-6745-01A-11D-1855-08	178	175	3	137	1.685393e-02	0	coding only	34834024	35	127	1.004765e-06	3.645861e-06
TCGA-49-6761-01A-31D-1945-08	228	217	11	162	4.824561e-02	1	exome+100bp flanks	34834024	54	154	1.550208e-06	4.420965e-06
TCGA-49-6767-01A-11D-1855-08	589	566	23	421	3.904924e-02	1	exome+100bp flanks	34834024	140	406	4.019059e-06	1.165527e-05
TCGA-50-5044-01A-21D-1855-08	188	176	12	125	6.382979e-02	1	exome+100bp flanks	34834024	48	118	1.377963e-06	3.387493e-06
TCGA-50-5045-01A-01D-1625-08	387	378	9	308	2.325581e-02	0	coding only	34834024	68	292	1.952114e-06	8.382609e-06
TCGA-50-5049-01A-01D-1625-08	1065	1043	22	815	2.065728e-02	0	coding only	34834024	216	784	6.200834e-06	2.250673e-05
TCGA-50-5051-01A-21D-1855-08	150	147	3	105	2.000000e-02	0	coding only	34834024	39	101	1.119595e-06	2.899464e-06
TCGA-50-5055-01A-01D-1625-08	29	28	1	26	3.448276e-02	1	exome+100bp flanks	34834024	2	23	5.741513e-08	6.602740e-07
TCGA-50-5066-01A-01D-1625-08	356	335	21	272	5.898876e-02	1	exome+100bp flanks	34834024	60	268	1.722454e-06	7.693627e-06
TCGA-50-5068-01A-01D-1625-08	123	121	2	94	1.626016e-02	0	coding only	34834024	27	89	7.751042e-07	2.554973e-06
TCGA-50-5072-01A-21D-1855-08	211	204	7	164	3.317536e-02	1	exome+100bp flanks	34834024	37	154	1.062180e-06	4.420965e-06
TCGA-50-5930-01A-11D-1753-08	1316	1260	56	980	4.255319e-02	1	exome+100bp flanks	34834024	266	921	7.636212e-06	2.643967e-05
TCGA-50-5931-01A-11D-1753-08	375	361	14	287	3.733333e-02	1	exome+100bp flanks	34834024	70	273	2.009530e-06	7.837165e-06
TCGA-50-5932-01A-11D-1753-08	97	86	11	71	1.134021e-01	1	exome+100bp flanks	34834024	14	69	4.019059e-07	1.980822e-06
TCGA-50-5933-01A-11D-1753-08	640	622	18	483	2.812500e-02	0	coding only	34834024	135	457	3.875521e-06	1.311936e-05
TCGA-50-5935-01A-11D-1753-08	133	131	2	106	1.503759e-02	0	coding only	34834024	25	103	7.176891e-07	2.956879e-06
TCGA-50-5936-01A-11D-1625-08	158	153	5	117	3.164557e-02	1	exome+100bp flanks	34834024	35	110	1.004765e-06	3.157832e-06
TCGA-50-5939-01A-11D-1625-08	110	102	8	81	7.272727e-02	1	exome+100bp flanks	34834024	21	79	6.028589e-07	2.267898e-06
TCGA-50-5941-01A-11D-1753-08	482	472	10	362	2.074689e-02	0	coding only	34834024	107	346	3.071709e-06	9.932817e-06
TCGA-50-5942-01A-21D-1753-08	91	86	5	68	5.494505e-02	1	exome+100bp flanks	34834024	16	66	4.593210e-07	1.894699e-06
TCGA-50-5944-01A-11D-1753-08	82	78	4	57	4.878049e-02	1	exome+100bp flanks	34834024	18	52	5.167362e-07	1.492793e-06
TCGA-50-5946-01A-11D-1753-08	793	773	20	588	2.522068e-02	0	coding only	34834024	179	562	5.138654e-06	1.613365e-05
TCGA-50-6590-01A-12D-1855-08	1122	1084	38	850	3.386809e-02	1	exome+100bp flanks	34834024	220	805	6.315664e-06	2.310959e-05
TCGA-50-6591-01A-11D-1753-08	74	70	4	56	5.405405e-02	1	exome+100bp flanks	34834024	14	54	4.019059e-07	1.550208e-06
TCGA-50-6592-01A-11D-1753-08	345	336	9	267	2.608696e-02	0	coding only	34834024	64	256	1.837284e-06	7.349137e-06
TCGA-50-6593-01A-11D-1753-08	379	369	10	275	2.638522e-02	0	coding only	34834024	89	262	2.554973e-06	7.521382e-06
TCGA-50-6594-01A-11D-1753-08	607	587	20	475	3.294893e-02	1	exome+100bp flanks	34834024	107	451	3.071709e-06	1.294711e-05
TCGA-50-6595-01A-12D-1855-08	127	126	1	102	7.874016e-03	0	coding only	34834024	20	94	5.741513e-07	2.698511e-06
TCGA-50-6597-01A-11D-1855-08	81	76	5	57	6.172840e-02	1	exome+100bp flanks	34834024	18	52	5.167362e-07	1.492793e-06
TCGA-50-6673-01A-11D-1945-08	70	68	2	58	2.857143e-02	0	coding only	34834024	10	58	2.870756e-07	1.665039e-06
TCGA-50-7109-01A-11D-2036-08	300	288	12	228	4.000000e-02	1	exome+100bp flanks	34834024	57	220	1.636331e-06	6.315664e-06
TCGA-50-8457-01A-11D-2323-08	69	67	2	52	2.898551e-02	0	coding only	34834024	14	47	4.019059e-07	1.349256e-06
TCGA-50-8459-01A-11D-2323-08	114	107	7	79	6.140351e-02	1	exome+100bp flanks	34834024	28	75	8.038118e-07	2.153067e-06
TCGA-50-8460-01A-11D-2323-08	37	33	4	29	1.081081e-01	1	exome+100bp flanks	34834024	4	28	1.148303e-07	8.038118e-07
TCGA-53-7624-01A-11D-2063-08	946	916	30	703	3.171247e-02	1	exome+100bp flanks	34834024	201	659	5.770221e-06	1.891829e-05
TCGA-53-7626-01A-12D-2063-08	424	412	12	322	2.830189e-02	0	coding only	34834024	88	300	2.526266e-06	8.612269e-06
TCGA-53-7813-01A-11D-2167-08	193	183	10	150	5.181347e-02	1	exome+100bp flanks	34834024	31	137	8.899345e-07	3.932936e-06
TCGA-53-A4EZ-01A-12D-A24P-08	623	593	30	446	4.815409e-02	1	exome+100bp flanks	34834024	138	428	3.961644e-06	1.228684e-05
TCGA-55-1592-01A-01D-0969-08	700	675	25	529	3.571429e-02	1	exome+100bp flanks	34834024	139	500	3.990352e-06	1.435378e-05
TCGA-55-1592-01A-01W-0928-08	658	631	27	506	4.103343e-02	1	exome+100bp flanks	34834024	118	479	3.387493e-06	1.375092e-05
TCGA-55-1594-01A-01D-1040-01	267	247	20	183	7.490637e-02	1	exome+100bp flanks	34834024	61	168	1.751161e-06	4.822871e-06
TCGA-55-1594-01A-01W-0928-08	272	255	17	195	6.250000e-02	1	exome+100bp flanks	34834024	58	182	1.665039e-06	5.224777e-06
TCGA-55-1595-01A-01D-0969-08	401	378	23	290	5.735661e-02	1	exome+100bp flanks	34834024	86	271	2.468851e-06	7.779750e-06
TCGA-55-1596-01A-01D-1040-01	237	216	21	180	8.860759e-02	1	exome+100bp flanks	34834024	35	169	1.004765e-06	4.851578e-06
TCGA-55-1596-01A-01W-0928-08	270	248	22	204	8.148148e-02	1	exome+100bp flanks	34834024	41	192	1.177010e-06	5.511852e-06
TCGA-55-5899-01A-11D-1625-08	528	511	17	385	3.219697e-02	1	exome+100bp flanks	34834024	120	369	3.444908e-06	1.059309e-05
TCGA-55-6543-01A-11D-1753-08	26	25	1	20	3.846154e-02	1	exome+100bp flanks	34834024	5	18	1.435378e-07	5.167362e-07
TCGA-55-6642-01A-11D-1855-08	155	148	7	115	4.516129e-02	1	exome+100bp flanks	34834024	31	107	8.899345e-07	3.071709e-06
TCGA-55-6712-01A-11D-1855-08	208	199	9	138	4.326923e-02	1	exome+100bp flanks	34834024	57	131	1.636331e-06	3.760691e-06
TCGA-55-6968-01A-11D-1945-08	666	646	20	487	3.003003e-02	1	exome+100bp flanks	34834024	148	461	4.248720e-06	1.323419e-05
TCGA-55-6969-01A-11D-1945-08	547	532	15	400	2.742230e-02	0	coding only	34834024	127	373	3.645861e-06	1.070792e-05
TCGA-55-6970-01A-11D-1945-08	207	200	7	165	3.381643e-02	1	exome+100bp flanks	34834024	32	162	9.186421e-07	4.650625e-06
TCGA-55-6971-01A-11D-1945-08	109	104	5	81	4.587156e-02	1	exome+100bp flanks	34834024	22	78	6.315664e-07	2.239190e-06
TCGA-55-6972-01A-11D-1945-08	334	320	14	239	4.191617e-02	1	exome+100bp flanks	34834024	77	218	2.210482e-06	6.258249e-06
TCGA-55-6975-01A-11D-1945-08	101	95	6	77	5.940594e-02	1	exome+100bp flanks	34834024	18	73	5.167362e-07	2.095652e-06
TCGA-55-6978-01A-11D-1945-08	49	43	6	35	1.224490e-01	1	exome+100bp flanks	34834024	6	34	1.722454e-07	9.760572e-07
TCGA-55-6979-01A-11D-1945-08	187	180	7	148	3.743316e-02	1	exome+100bp flanks	34834024	30	134	8.612269e-07	3.846814e-06
TCGA-55-6980-01A-11D-1945-08	23	21	2	18	8.695652e-02	1	exome+100bp flanks	34834024	3	16	8.612269e-08	4.593210e-07
TCGA-55-6981-01A-11D-1945-08	75	70	5	59	6.666667e-02	1	exome+100bp flanks	34834024	11	58	3.157832e-07	1.665039e-06
TCGA-55-6982-01A-11D-1945-08	292	286	6	213	2.054795e-02	0	coding only	34834024	67	208	1.923407e-06	5.971173e-06
TCGA-55-6983-01A-11D-1945-08	140	136	4	110	2.857143e-02	0	coding only	34834024	23	105	6.602740e-07	3.014294e-06
TCGA-55-6984-01A-11D-1945-08	29	25	4	19	1.379310e-01	1	exome+100bp flanks	34834024	6	19	1.722454e-07	5.454437e-07
TCGA-55-6985-01A-11D-1945-08	546	523	23	405	4.212454e-02	1	exome+100bp flanks	34834024	113	383	3.243955e-06	1.099500e-05
TCGA-55-6986-01A-11D-1945-08	28	27	1	20	3.571429e-02	1	exome+100bp flanks	34834024	6	19	1.722454e-07	5.454437e-07
TCGA-55-6987-01A-11D-1945-08	261	255	6	196	2.298851e-02	0	coding only	34834024	54	189	1.550208e-06	5.425730e-06
TCGA-55-7227-01A-11D-2036-08	199	190	9	146	4.522613e-02	1	exome+100bp flanks	34834024	42	143	1.205718e-06	4.105182e-06
TCGA-55-7281-01A-11D-2036-08	542	529	13	421	2.398524e-02	0	coding only	34834024	103	401	2.956879e-06	1.151173e-05
TCGA-55-7283-01A-11D-2036-08	285	272	13	212	4.561404e-02	1	exome+100bp flanks	34834024	58	201	1.665039e-06	5.770221e-06
TCGA-55-7284-01B-11D-2238-08	73	71	2	52	2.739726e-02	0	coding only	34834024	19	48	5.454437e-07	1.377963e-06
TCGA-55-7570-01A-11D-2036-08	456	436	20	346	4.385965e-02	1	exome+100bp flanks	34834024	86	326	2.468851e-06	9.358666e-06
TCGA-55-7573-01A-11D-2036-08	63	62	1	51	1.587302e-02	0	coding only	34834024	10	51	2.870756e-07	1.464086e-06
TCGA-55-7574-01A-11D-2036-08	322	315	7	252	2.173913e-02	0	coding only	34834024	61	244	1.751161e-06	7.004646e-06
TCGA-55-7576-01A-11D-2063-08	492	471	21	363	4.268293e-02	1	exome+100bp flanks	34834024	103	346	2.956879e-06	9.932817e-06
TCGA-55-7724-01A-11D-2167-08	310	298	12	237	3.870968e-02	1	exome+100bp flanks	34834024	56	224	1.607624e-06	6.430495e-06
TCGA-55-7725-01A-11D-2167-08	164	160	4	121	2.439024e-02	0	coding only	34834024	38	117	1.090887e-06	3.358785e-06
TCGA-55-7726-01A-11D-2167-08	139	135	4	108	2.877698e-02	0	coding only	34834024	27	104	7.751042e-07	2.985587e-06
TCGA-55-7727-01A-11D-2167-08	320	304	16	222	5.000000e-02	1	exome+100bp flanks	34834024	80	212	2.296605e-06	6.086004e-06
TCGA-55-7728-01A-11D-2184-08	127	124	3	99	2.362205e-02	0	coding only	34834024	23	94	6.602740e-07	2.698511e-06
TCGA-55-7815-01A-11D-2167-08	178	171	7	129	3.932584e-02	1	exome+100bp flanks	34834024	41	125	1.177010e-06	3.588446e-06
TCGA-55-7816-01A-11D-2167-08	15	12	3	11	2.000000e-01	1	exome+100bp flanks	34834024	1	10	2.870756e-08	2.870756e-07
TCGA-55-7903-01A-11D-2167-08	197	191	6	148	3.045685e-02	1	exome+100bp flanks	34834024	41	136	1.177010e-06	3.904229e-06
TCGA-55-7907-01A-11D-2167-08	1381	1328	53	1038	3.837799e-02	1	exome+100bp flanks	34834024	275	985	7.894580e-06	2.827695e-05
TCGA-55-7910-01A-11D-2167-08	370	358	12	292	3.243243e-02	1	exome+100bp flanks	34834024	63	281	1.808577e-06	8.066826e-06
TCGA-55-7911-01A-11D-2167-08	287	275	12	211	4.181185e-02	1	exome+100bp flanks	34834024	61	203	1.751161e-06	5.827636e-06
TCGA-55-7913-01B-11D-2238-08	426	407	19	319	4.460094e-02	1	exome+100bp flanks	34834024	86	303	2.468851e-06	8.698392e-06
TCGA-55-7914-01A-11D-2167-08	221	207	14	159	6.334842e-02	1	exome+100bp flanks	34834024	43	150	1.234425e-06	4.306135e-06
TCGA-55-7994-01A-11D-2184-08	1841	1777	64	1384	3.476372e-02	1	exome+100bp flanks	34834024	374	1325	1.073663e-05	3.803752e-05
TCGA-55-7995-01A-11D-2184-08	803	775	28	608	3.486924e-02	1	exome+100bp flanks	34834024	161	573	4.621918e-06	1.644943e-05
TCGA-55-8085-01A-11D-2238-08	318	310	8	229	2.515723e-02	0	coding only	34834024	75	215	2.153067e-06	6.172126e-06
TCGA-55-8087-01A-11D-2238-08	52	44	8	33	1.538462e-01	1	exome+100bp flanks	34834024	11	30	3.157832e-07	8.612269e-07
TCGA-55-8089-01A-11D-2238-08	1534	1487	47	1135	3.063885e-02	1	exome+100bp flanks	34834024	338	1081	9.703157e-06	3.103288e-05
TCGA-55-8090-01A-11D-2238-08	115	106	9	79	7.826087e-02	1	exome+100bp flanks	34834024	25	74	7.176891e-07	2.124360e-06
TCGA-55-8091-01A-11D-2238-08	41	41	0	36	0	1	exome+100bp flanks	34834024	4	35	1.148303e-07	1.004765e-06
TCGA-55-8092-01A-11D-2238-08	693	662	31	488	4.473304e-02	1	exome+100bp flanks	34834024	161	467	4.621918e-06	1.340643e-05
TCGA-55-8094-01A-11D-2238-08	562	538	24	410	4.270463e-02	1	exome+100bp flanks	34834024	124	399	3.559738e-06	1.145432e-05
TCGA-55-8096-01A-11D-2238-08	187	178	9	138	4.812834e-02	1	exome+100bp flanks	34834024	38	124	1.090887e-06	3.559738e-06
TCGA-55-8097-01A-11D-2238-08	161	151	10	118	6.211180e-02	1	exome+100bp flanks	34834024	31	111	8.899345e-07	3.186540e-06
TCGA-55-8203-01A-11D-2238-08	511	491	20	378	3.913894e-02	1	exome+100bp flanks	34834024	110	360	3.157832e-06	1.033472e-05
TCGA-55-8204-01A-11D-2238-08	283	262	21	200	7.420495e-02	1	exome+100bp flanks	34834024	59	188	1.693746e-06	5.397022e-06
TCGA-55-8205-01A-11D-2238-08	632	615	17	472	2.689873e-02	0	coding only	34834024	135	451	3.875521e-06	1.294711e-05
TCGA-55-8206-01A-11D-2238-08	44	41	3	30	6.818182e-02	1	exome+100bp flanks	34834024	11	25	3.157832e-07	7.176891e-07
TCGA-55-8207-01A-11D-2238-08	386	373	13	288	3.367876e-02	1	exome+100bp flanks	34834024	81	276	2.325313e-06	7.923288e-06
TCGA-55-8208-01A-11D-2238-08	554	543	11	408	1.985560e-02	0	coding only	34834024	129	383	3.703276e-06	1.099500e-05
TCGA-55-8299-01A-11D-2284-08	393	374	19	295	4.834606e-02	1	exome+100bp flanks	34834024	75	287	2.153067e-06	8.239071e-06
TCGA-55-8301-01A-11D-2284-08	414	404	10	305	2.415459e-02	0	coding only	34834024	91	290	2.612388e-06	8.325194e-06
TCGA-55-8302-01A-11D-2323-08	823	792	31	624	3.766707e-02	1	exome+100bp flanks	34834024	162	599	4.650625e-06	1.719583e-05
TCGA-55-8505-01A-11D-2393-08	53	47	6	33	1.132075e-01	1	exome+100bp flanks	34834024	13	32	3.731983e-07	9.186421e-07
TCGA-55-8506-01A-11D-2393-08	2169	2116	53	1627	2.443522e-02	0	coding only	34834024	465	1548	1.334902e-05	4.443931e-05
TCGA-55-8507-01A-11D-2393-08	1157	1107	50	867	4.321521e-02	1	exome+100bp flanks	34834024	231	827	6.631447e-06	2.374116e-05
TCGA-55-8508-01A-11D-2393-08	221	210	11	162	4.977376e-02	1	exome+100bp flanks	34834024	46	156	1.320548e-06	4.478380e-06
TCGA-55-8510-01A-11D-2393-08	388	369	19	277	4.896907e-02	1	exome+100bp flanks	34834024	85	261	2.440143e-06	7.492674e-06
TCGA-55-8511-01A-11D-2393-08	702	681	21	522	2.991453e-02	0	coding only	34834024	151	493	4.334842e-06	1.415283e-05
TCGA-55-8512-01A-11D-2393-08	52	47	5	35	9.615385e-02	1	exome+100bp flanks	34834024	11	35	3.157832e-07	1.004765e-06
TCGA-55-8513-01A-11D-2393-08	14	12	2	11	1.428571e-01	1	exome+100bp flanks	34834024	1	10	2.870756e-08	2.870756e-07
TCGA-55-8514-01A-11D-2393-08	348	331	17	257	4.885057e-02	1	exome+100bp flanks	34834024	71	240	2.038237e-06	6.889816e-06
TCGA-55-8614-01A-11D-2393-08	292	279	13	206	4.452055e-02	1	exome+100bp flanks	34834024	72	196	2.066945e-06	5.626683e-06
TCGA-55-8615-01A-11D-2393-08	154	152	2	103	1.298701e-02	0	coding only	34834024	48	97	1.377963e-06	2.784634e-06
TCGA-55-8616-01A-11D-2393-08	585	569	16	444	2.735043e-02	0	coding only	34834024	122	421	3.502323e-06	1.208588e-05
TCGA-55-8619-01A-11D-2393-08	32	29	3	24	9.375000e-02	1	exome+100bp flanks	34834024	5	23	1.435378e-07	6.602740e-07
TCGA-55-8620-01A-11D-2393-08	607	575	32	443	5.271829e-02	1	exome+100bp flanks	34834024	126	425	3.617153e-06	1.220072e-05
TCGA-55-8621-01A-11D-2393-08	143	138	5	108	3.496503e-02	1	exome+100bp flanks	34834024	28	105	8.038118e-07	3.014294e-06
TCGA-55-A48X-01A-11D-A24D-08	481	463	18	374	3.742204e-02	1	exome+100bp flanks	34834024	81	357	2.325313e-06	1.024860e-05
TCGA-55-A48Y-01A-11D-A24D-08	401	398	3	301	7.481297e-03	0	coding only	34834024	97	285	2.784634e-06	8.181656e-06
TCGA-55-A48Z-01A-12D-A24P-08	64	62	2	46	3.125000e-02	1	exome+100bp flanks	34834024	16	43	4.593210e-07	1.234425e-06
TCGA-55-A490-01A-11D-A24D-08	1580	1519	61	1185	3.860759e-02	1	exome+100bp flanks	34834024	316	1112	9.071590e-06	3.192281e-05
TCGA-55-A491-01A-11D-A24D-08	450	434	16	334	3.555556e-02	1	exome+100bp flanks	34834024	97	312	2.784634e-06	8.956760e-06
TCGA-55-A492-01A-11D-A24D-08	367	355	12	269	3.269755e-02	1	exome+100bp flanks	34834024	78	254	2.239190e-06	7.291721e-06
TCGA-55-A493-01A-11D-A24D-08	334	323	11	239	3.293413e-02	1	exome+100bp flanks	34834024	81	225	2.325313e-06	6.459202e-06
TCGA-55-A494-01A-11D-A24P-08	286	269	17	211	5.944056e-02	1	exome+100bp flanks	34834024	57	202	1.636331e-06	5.798928e-06
TCGA-55-A4DF-01A-11D-A24D-08	907	878	29	657	3.197354e-02	1	exome+100bp flanks	34834024	216	628	6.200834e-06	1.802835e-05
TCGA-55-A4DG-01A-11D-A24D-08	817	785	32	628	3.916769e-02	1	exome+100bp flanks	34834024	154	599	4.420965e-06	1.719583e-05
TCGA-62-8394-01A-11D-2323-08	181	175	6	130	3.314917e-02	1	exome+100bp flanks	34834024	42	123	1.205718e-06	3.531030e-06
TCGA-62-8395-01A-11D-2323-08	99	91	8	75	8.080808e-02	1	exome+100bp flanks	34834024	15	71	4.306135e-07	2.038237e-06
TCGA-62-8397-01A-11D-2323-08	40	39	1	30	2.500000e-02	1	exome+100bp flanks	34834024	8	27	2.296605e-07	7.751042e-07
TCGA-62-8398-01A-11D-2323-08	108	104	4	81	3.703704e-02	1	exome+100bp flanks	34834024	21	77	6.028589e-07	2.210482e-06
TCGA-62-8399-01A-21D-2323-08	630	607	23	467	3.650794e-02	1	exome+100bp flanks	34834024	135	441	3.875521e-06	1.266004e-05
TCGA-62-8402-01A-11D-2323-08	85	74	11	45	1.294118e-01	1	exome+100bp flanks	34834024	27	43	7.751042e-07	1.234425e-06
TCGA-62-A46O-01A-11D-A24D-08	1076	1038	38	812	3.531599e-02	1	exome+100bp flanks	34834024	213	770	6.114711e-06	2.210482e-05
TCGA-62-A46P-01A-11D-A24D-08	344	325	19	260	5.523256e-02	1	exome+100bp flanks	34834024	64	247	1.837284e-06	7.090768e-06
TCGA-62-A46R-01A-11D-A24D-08	216	203	13	167	6.018519e-02	1	exome+100bp flanks	34834024	36	163	1.033472e-06	4.679333e-06
TCGA-62-A46S-01A-11D-A24D-08	162	149	13	115	8.024691e-02	1	exome+100bp flanks	34834024	33	108	9.473496e-07	3.100417e-06
TCGA-62-A46U-01A-11D-A24D-08	55	53	2	43	3.636364e-02	1	exome+100bp flanks	34834024	10	42	2.870756e-07	1.205718e-06
TCGA-62-A46V-01A-11D-A24D-08	70	66	4	53	5.714286e-02	1	exome+100bp flanks	34834024	13	50	3.731983e-07	1.435378e-06
TCGA-62-A46Y-01A-11D-A24D-08	50	46	4	38	8.000000e-02	1	exome+100bp flanks	34834024	8	36	2.296605e-07	1.033472e-06
TCGA-62-A470-01A-11D-A24D-08	148	134	14	102	9.459459e-02	1	exome+100bp flanks	34834024	29	100	8.325194e-07	2.870756e-06
TCGA-62-A471-01A-12D-A24D-08	139	130	9	94	6.474820e-02	1	exome+100bp flanks	34834024	35	89	1.004765e-06	2.554973e-06
TCGA-62-A472-01A-11D-A24D-08	78	73	5	54	6.410256e-02	1	exome+100bp flanks	34834024	18	51	5.167362e-07	1.464086e-06
TCGA-64-1676-01A-01D-0969-08	717	684	33	528	4.602510e-02	1	exome+100bp flanks	34834024	147	498	4.220012e-06	1.429637e-05
TCGA-64-1676-01A-01W-0928-08	706	675	31	525	4.390935e-02	1	exome+100bp flanks	34834024	142	494	4.076474e-06	1.418154e-05
TCGA-64-1677-01A-01W-0928-08	299	283	16	213	5.351171e-02	1	exome+100bp flanks	34834024	68	199	1.952114e-06	5.712805e-06
TCGA-64-1678-01A-01W-0928-08	524	497	27	391	5.152672e-02	1	exome+100bp flanks	34834024	103	365	2.956879e-06	1.047826e-05
TCGA-64-1679-01A-21D-2063-08	617	594	23	467	3.727715e-02	1	exome+100bp flanks	34834024	119	428	3.416200e-06	1.228684e-05
TCGA-64-1680-01A-02D-0969-08	94	89	5	66	5.319149e-02	1	exome+100bp flanks	34834024	22	64	6.315664e-07	1.837284e-06
TCGA-64-1680-01A-02W-0928-08	77	69	8	54	1.038961e-01	1	exome+100bp flanks	34834024	15	53	4.306135e-07	1.521501e-06
TCGA-64-1681-01A-11D-2063-08	103	100	3	78	2.912621e-02	0	coding only	34834024	20	75	5.741513e-07	2.153067e-06
TCGA-64-5774-01A-01D-1625-08	177	169	8	130	4.519774e-02	1	exome+100bp flanks	34834024	35	124	1.004765e-06	3.559738e-06
TCGA-64-5775-01A-01D-1625-08	587	555	32	423	5.451448e-02	1	exome+100bp flanks	34834024	122	404	3.502323e-06	1.159786e-05
TCGA-64-5778-01A-01D-1625-08	576	549	27	437	4.687500e-02	1	exome+100bp flanks	34834024	108	413	3.100417e-06	1.185622e-05
TCGA-64-5779-01A-01D-1625-08	430	418	12	330	2.790698e-02	0	coding only	34834024	84	313	2.411435e-06	8.985468e-06
TCGA-64-5781-01A-01D-1625-08	1354	1317	37	1018	2.732644e-02	0	coding only	34834024	284	962	8.152948e-06	2.761668e-05
TCGA-64-5815-01A-01D-1625-08	219	206	13	153	5.936073e-02	1	exome+100bp flanks	34834024	53	145	1.521501e-06	4.162597e-06
TCGA-67-3770-01A-01D-0969-08	270	257	13	199	4.814815e-02	1	exome+100bp flanks	34834024	55	192	1.578916e-06	5.511852e-06
TCGA-67-3770-01A-01W-0928-08	281	269	12	211	4.270463e-02	1	exome+100bp flanks	34834024	55	204	1.578916e-06	5.856343e-06
TCGA-67-3771-01A-01D-1040-01	1291	1255	36	962	2.788536e-02	0	coding only	34834024	280	925	8.038118e-06	2.655450e-05
TCGA-67-3771-01A-01W-0928-08	1379	1336	43	1038	3.118202e-02	1	exome+100bp flanks	34834024	283	989	8.124241e-06	2.839178e-05
TCGA-67-3772-01A-01W-0928-08	95	88	7	67	7.368421e-02	1	exome+100bp flanks	34834024	20	59	5.741513e-07	1.693746e-06
TCGA-67-3773-01A-01D-1040-01	133	119	14	97	1.052632e-01	1	exome+100bp flanks	34834024	22	96	6.315664e-07	2.755926e-06
TCGA-67-3774-01A-01D-1040-01	156	141	15	104	9.615385e-02	1	exome+100bp flanks	34834024	33	97	9.473496e-07	2.784634e-06
TCGA-67-3774-01A-01W-0928-08	186	171	15	134	8.064516e-02	1	exome+100bp flanks	34834024	34	128	9.760572e-07	3.674568e-06
TCGA-67-4679-01B-01D-1753-08	342	329	13	254	3.801170e-02	1	exome+100bp flanks	34834024	73	240	2.095652e-06	6.889816e-06
TCGA-67-6215-01A-11D-1753-08	143	136	7	108	4.895105e-02	1	exome+100bp flanks	34834024	27	101	7.751042e-07	2.899464e-06
TCGA-67-6216-01A-11D-1753-08	60	55	5	45	8.333333e-02	1	exome+100bp flanks	34834024	10	42	2.870756e-07	1.205718e-06
TCGA-67-6217-01A-11D-1753-08	225	220	5	174	2.222222e-02	0	coding only	34834024	43	164	1.234425e-06	4.708041e-06
TCGA-69-7760-01A-11D-2167-08	99	93	6	69	6.060606e-02	1	exome+100bp flanks	34834024	22	64	6.315664e-07	1.837284e-06
TCGA-69-7761-01A-11D-2167-08	52	44	8	35	1.538462e-01	1	exome+100bp flanks	34834024	9	33	2.583681e-07	9.473496e-07
TCGA-69-7763-01A-11D-2167-08	111	101	10	74	9.009009e-02	1	exome+100bp flanks	34834024	27	73	7.751042e-07	2.095652e-06
TCGA-69-7764-01A-11D-2167-08	129	120	9	87	6.976744e-02	1	exome+100bp flanks	34834024	32	83	9.186421e-07	2.382728e-06
TCGA-69-7765-01A-11D-2167-08	791	766	25	587	3.160556e-02	1	exome+100bp flanks	34834024	176	552	5.052531e-06	1.584658e-05
TCGA-69-7973-01A-11D-2184-08	304	291	13	228	4.276316e-02	1	exome+100bp flanks	34834024	60	217	1.722454e-06	6.229542e-06
TCGA-69-7974-01A-11D-2184-08	625	603	22	480	3.520000e-02	1	exome+100bp flanks	34834024	123	458	3.531030e-06	1.314806e-05
TCGA-69-7978-01A-11D-2184-08	777	764	13	575	1.673102e-02	0	coding only	34834024	183	543	5.253484e-06	1.558821e-05
TCGA-69-7979-01A-11D-2184-08	1737	1665	72	1321	4.145078e-02	1	exome+100bp flanks	34834024	328	1258	9.416081e-06	3.611412e-05
TCGA-69-7980-01A-11D-2184-08	972	951	21	745	2.160494e-02	0	coding only	34834024	196	710	5.626683e-06	2.038237e-05
TCGA-69-8253-01A-11D-2284-08	209	184	25	134	1.196172e-01	1	exome+100bp flanks	34834024	49	131	1.406671e-06	3.760691e-06
TCGA-69-8254-01A-11D-2284-08	101	92	9	80	8.910891e-02	1	exome+100bp flanks	34834024	12	74	3.444908e-07	2.124360e-06
TCGA-69-8255-01A-11D-2284-08	350	335	15	265	4.285714e-02	1	exome+100bp flanks	34834024	69	251	1.980822e-06	7.205599e-06
TCGA-69-A59K-01A-11D-A25L-08	594	571	23	437	3.872054e-02	1	exome+100bp flanks	34834024	126	408	3.617153e-06	1.171269e-05
TCGA-71-6725-01A-11D-1855-08	79	74	5	51	6.329114e-02	1	exome+100bp flanks	34834024	23	51	6.602740e-07	1.464086e-06
TCGA-71-8520-01A-11D-2393-08	117	109	8	86	6.837607e-02	1	exome+100bp flanks	34834024	23	83	6.602740e-07	2.382728e-06
TCGA-73-4658-01A-01D-1753-08	362	362	0	281	0	0	coding only	34834024	81	277	2.325313e-06	7.951995e-06
TCGA-73-4659-01A-01D-1265-08	256	244	12	185	4.687500e-02	1	exome+100bp flanks	34834024	58	175	1.665039e-06	5.023824e-06
TCGA-73-4662-01A-01D-1265-08	279	269	10	211	3.584229e-02	1	exome+100bp flanks	34834024	57	199	1.636331e-06	5.712805e-06
TCGA-73-4666-01A-01D-1265-08	434	420	14	319	3.225806e-02	1	exome+100bp flanks	34834024	94	302	2.698511e-06	8.669685e-06
TCGA-73-4668-01A-01D-1265-08	526	506	20	421	3.802281e-02	1	exome+100bp flanks	34834024	79	397	2.267898e-06	1.139690e-05
TCGA-73-4670-01A-01D-1265-08	418	402	16	314	3.827751e-02	1	exome+100bp flanks	34834024	80	296	2.296605e-06	8.497439e-06
TCGA-73-4675-01A-01D-1265-08	92	84	8	65	8.695652e-02	1	exome+100bp flanks	34834024	19	56	5.454437e-07	1.607624e-06
TCGA-73-4676-01A-01D-1753-08	118	113	5	84	4.237288e-02	1	exome+100bp flanks	34834024	26	83	7.463967e-07	2.382728e-06
TCGA-73-4677-01A-01D-1265-08	296	286	10	225	3.378378e-02	1	exome+100bp flanks	34834024	58	212	1.665039e-06	6.086004e-06
TCGA-73-7498-01A-12D-2184-08	148	140	8	102	5.405405e-02	1	exome+100bp flanks	34834024	37	100	1.062180e-06	2.870756e-06
TCGA-73-7499-01A-11D-2184-08	95	93	2	74	2.105263e-02	0	coding only	34834024	19	72	5.454437e-07	2.066945e-06
TCGA-75-5122-01A-01D-1753-08	194	183	11	133	5.670103e-02	1	exome+100bp flanks	34834024	50	120	1.435378e-06	3.444908e-06
TCGA-75-5125-01A-01D-1753-08	213	208	5	161	2.347418e-02	0	coding only	34834024	43	151	1.234425e-06	4.334842e-06
TCGA-75-5126-01A-01D-1753-08	784	761	23	579	2.933673e-02	0	coding only	34834024	170	551	4.880286e-06	1.581787e-05
TCGA-75-5146-01A-01D-1625-08	234	226	8	175	3.418803e-02	1	exome+100bp flanks	34834024	50	165	1.435378e-06	4.736748e-06
TCGA-75-5147-01A-01D-1625-08	60	58	2	48	3.333333e-02	1	exome+100bp flanks	34834024	9	48	2.583681e-07	1.377963e-06
TCGA-75-6203-01A-11D-1753-08	23	23	0	15	0	1	exome+100bp flanks	34834024	7	14	2.009530e-07	4.019059e-07
TCGA-75-6205-01A-11D-1753-08	60	57	3	48	5.000000e-02	1	exome+100bp flanks	34834024	9	45	2.583681e-07	1.291840e-06
TCGA-75-6206-01A-11D-1753-08	108	106	2	87	1.851852e-02	0	coding only	34834024	17	80	4.880286e-07	2.296605e-06
TCGA-75-6207-01A-11D-1753-08	95	88	7	63	7.368421e-02	1	exome+100bp flanks	34834024	25	62	7.176891e-07	1.779869e-06
TCGA-75-6211-01A-11D-1753-08	424	405	19	324	4.481132e-02	1	exome+100bp flanks	34834024	79	310	2.267898e-06	8.899345e-06
TCGA-75-6212-01A-11D-1753-08	32	28	4	21	1.250000e-01	1	exome+100bp flanks	34834024	6	21	1.722454e-07	6.028589e-07
TCGA-75-6214-01A-41D-1945-08	894	862	32	667	3.579418e-02	1	exome+100bp flanks	34834024	182	635	5.224777e-06	1.822930e-05
TCGA-75-7025-01A-12D-1945-08	51	49	2	34	3.921569e-02	1	exome+100bp flanks	34834024	14	32	4.019059e-07	9.186421e-07
TCGA-75-7027-01A-11D-1945-08	284	267	17	200	5.985915e-02	1	exome+100bp flanks	34834024	63	189	1.808577e-06	5.425730e-06
TCGA-75-7030-01A-11D-1945-08	27	24	3	21	1.111111e-01	1	exome+100bp flanks	34834024	3	20	8.612269e-08	5.741513e-07
TCGA-75-7031-01A-11D-1945-08	257	248	9	189	3.501946e-02	1	exome+100bp flanks	34834024	55	180	1.578916e-06	5.167362e-06
TCGA-78-7143-01A-11D-2036-08	49	49	0	42	0	1	exome+100bp flanks	34834024	7	41	2.009530e-07	1.177010e-06
TCGA-78-7145-01A-11D-2036-08	239	222	17	175	7.112971e-02	1	exome+100bp flanks	34834024	43	163	1.234425e-06	4.679333e-06
TCGA-78-7146-01A-11D-2036-08	432	417	15	313	3.472222e-02	1	exome+100bp flanks	34834024	97	292	2.784634e-06	8.382609e-06
TCGA-78-7147-01A-11D-2036-08	411	399	12	296	2.919708e-02	0	coding only	34834024	102	284	2.928172e-06	8.152948e-06
TCGA-78-7148-01A-11D-2036-08	278	268	10	209	3.597122e-02	1	exome+100bp flanks	34834024	52	202	1.492793e-06	5.798928e-06
TCGA-78-7149-01A-11D-2036-08	194	190	4	141	2.061856e-02	0	coding only	34834024	47	128	1.349256e-06	3.674568e-06
TCGA-78-7150-01A-21D-2036-08	492	482	10	360	2.032520e-02	0	coding only	34834024	114	346	3.272662e-06	9.932817e-06
TCGA-78-7152-01A-11D-2036-08	248	237	11	177	4.435484e-02	1	exome+100bp flanks	34834024	53	171	1.521501e-06	4.908994e-06
TCGA-78-7153-01A-11D-2036-08	156	148	8	109	5.128205e-02	1	exome+100bp flanks	34834024	35	101	1.004765e-06	2.899464e-06
TCGA-78-7154-01A-11D-2036-08	309	298	11	204	3.559871e-02	1	exome+100bp flanks	34834024	89	194	2.554973e-06	5.569268e-06
TCGA-78-7155-01A-11D-2036-08	1789	1724	65	1391	3.633315e-02	1	exome+100bp flanks	34834024	320	1300	9.186421e-06	3.731983e-05
TCGA-78-7156-01A-11D-2036-08	397	384	13	304	3.274559e-02	1	exome+100bp flanks	34834024	74	296	2.124360e-06	8.497439e-06
TCGA-78-7158-01A-11D-2036-08	285	276	9	224	3.157895e-02	1	exome+100bp flanks	34834024	51	213	1.464086e-06	6.114711e-06
TCGA-78-7159-01A-11D-2036-08	363	350	13	264	3.581267e-02	1	exome+100bp flanks	34834024	84	253	2.411435e-06	7.263014e-06
TCGA-78-7160-01A-11D-2036-08	57	54	3	34	5.263158e-02	1	exome+100bp flanks	34834024	19	33	5.454437e-07	9.473496e-07
TCGA-78-7161-01A-11D-2036-08	227	220	7	161	3.083700e-02	1	exome+100bp flanks	34834024	56	154	1.607624e-06	4.420965e-06
TCGA-78-7162-01A-21D-2063-08	110	107	3	79	2.727273e-02	0	coding only	34834024	27	73	7.751042e-07	2.095652e-06
TCGA-78-7163-01A-12D-2063-08	30	28	2	22	6.666667e-02	1	exome+100bp flanks	34834024	6	22	1.722454e-07	6.315664e-07
TCGA-78-7166-01A-12D-2063-08	261	256	5	193	1.915709e-02	0	coding only	34834024	62	186	1.779869e-06	5.339607e-06
TCGA-78-7167-01A-11D-2063-08	122	118	4	91	3.278689e-02	1	exome+100bp flanks	34834024	27	89	7.751042e-07	2.554973e-06
TCGA-78-7220-01A-11D-2036-08	975	950	25	733	2.564103e-02	0	coding only	34834024	210	701	6.028589e-06	2.012400e-05
TCGA-78-7535-01A-11D-2063-08	211	202	9	145	4.265403e-02	1	exome+100bp flanks	34834024	50	138	1.435378e-06	3.961644e-06
TCGA-78-7536-01A-11D-2063-08	708	685	23	526	3.248588e-02	1	exome+100bp flanks	34834024	152	501	4.363550e-06	1.438249e-05
TCGA-78-7537-01A-11D-2063-08	169	162	7	136	4.142012e-02	1	exome+100bp flanks	34834024	26	132	7.463967e-07	3.789399e-06
TCGA-78-7539-01A-11D-2063-08	584	564	20	424	3.424658e-02	1	exome+100bp flanks	34834024	132	405	3.789399e-06	1.162656e-05
TCGA-78-7540-01A-11D-2063-08	37	37	0	26	0	1	exome+100bp flanks	34834024	10	26	2.870756e-07	7.463967e-07
TCGA-78-7542-01A-21D-2063-08	450	434	16	329	3.555556e-02	1	exome+100bp flanks	34834024	101	308	2.899464e-06	8.841930e-06
TCGA-78-7633-01A-11D-2063-08	128	122	6	96	4.687500e-02	1	exome+100bp flanks	34834024	25	94	7.176891e-07	2.698511e-06
TCGA-78-8640-01A-11D-2393-08	871	842	29	660	3.329506e-02	1	exome+100bp flanks	34834024	173	633	4.966409e-06	1.817189e-05
TCGA-78-8648-01A-11D-2393-08	18	17	1	16	5.555556e-02	1	exome+100bp flanks	34834024	1	15	2.870756e-08	4.306135e-07
TCGA-78-8655-01A-11D-2393-08	134	127	7	100	5.223881e-02	1	exome+100bp flanks	34834024	27	91	7.751042e-07	2.612388e-06
TCGA-78-8660-01A-11D-2393-08	311	298	13	225	4.180064e-02	1	exome+100bp flanks	34834024	70	213	2.009530e-06	6.114711e-06
TCGA-78-8662-01A-11D-2393-08	1390	1330	60	1033	4.316547e-02	1	exome+100bp flanks	34834024	279	982	8.009411e-06	2.819083e-05
TCGA-80-5607-01A-31D-1945-08	156	150	6	117	3.846154e-02	1	exome+100bp flanks	34834024	30	113	8.612269e-07	3.243955e-06
TCGA-80-5608-01A-31D-1945-08	201	192	9	149	4.477612e-02	1	exome+100bp flanks	34834024	40	144	1.148303e-06	4.133889e-06
TCGA-80-5611-01A-01D-1625-08	254	243	11	193	4.330709e-02	1	exome+100bp flanks	34834024	48	183	1.377963e-06	5.253484e-06
TCGA-83-5908-01A-21D-2284-08	298	291	7	226	2.348993e-02	0	coding only	34834024	60	213	1.722454e-06	6.114711e-06
TCGA-86-6562-01A-11D-1753-08	71	68	3	54	4.225352e-02	1	exome+100bp flanks	34834024	14	52	4.019059e-07	1.492793e-06
TCGA-86-6851-01A-11D-1945-08	1110	1072	38	842	3.423423e-02	1	exome+100bp flanks	34834024	215	796	6.172126e-06	2.285122e-05
TCGA-86-7701-01A-11D-2167-08	250	239	11	182	4.400000e-02	1	exome+100bp flanks	34834024	53	178	1.521501e-06	5.109947e-06
TCGA-86-7711-01A-11D-2063-08	288	277	11	204	3.819444e-02	1	exome+100bp flanks	34834024	70	193	2.009530e-06	5.540560e-06
TCGA-86-7713-01A-11D-2063-08	190	183	7	147	3.684211e-02	1	exome+100bp flanks	34834024	34	140	9.760572e-07	4.019059e-06
TCGA-86-7714-01A-12D-2167-08	102	99	3	75	2.941176e-02	0	coding only	34834024	23	70	6.602740e-07	2.009530e-06
TCGA-86-7953-01A-11D-2184-08	70	67	3	54	4.285714e-02	1	exome+100bp flanks	34834024	11	53	3.157832e-07	1.521501e-06
TCGA-86-7954-01A-11D-2184-08	285	276	9	197	3.157895e-02	1	exome+100bp flanks	34834024	75	189	2.153067e-06	5.425730e-06
TCGA-86-7955-01A-11D-2184-08	376	359	17	275	4.521277e-02	1	exome+100bp flanks	34834024	76	254	2.181775e-06	7.291721e-06
TCGA-86-8054-01A-11D-2238-08	283	267	16	214	5.653710e-02	1	exome+100bp flanks	34834024	52	200	1.492793e-06	5.741513e-06
TCGA-86-8055-01A-11D-2238-08	79	71	8	51	1.012658e-01	1	exome+100bp flanks	34834024	20	47	5.741513e-07	1.349256e-06
TCGA-86-8056-01A-11D-2238-08	357	350	7	277	1.960784e-02	0	coding only	34834024	72	255	2.066945e-06	7.320429e-06
TCGA-86-8073-01A-11D-2238-08	1895	1844	51	1417	2.691293e-02	0	coding only	34834024	418	1357	1.199976e-05	3.895617e-05
TCGA-86-8074-01A-11D-2238-08	86	83	3	65	3.488372e-02	1	exome+100bp flanks	34834024	18	62	5.167362e-07	1.779869e-06
TCGA-86-8075-01A-11D-2238-08	66	64	2	51	3.030303e-02	1	exome+100bp flanks	34834024	12	48	3.444908e-07	1.377963e-06
TCGA-86-8076-01A-31D-2238-08	93	89	4	70	4.301075e-02	1	exome+100bp flanks	34834024	18	67	5.167362e-07	1.923407e-06
TCGA-86-8278-01A-11D-2284-08	134	130	4	98	2.985075e-02	0	coding only	34834024	31	93	8.899345e-07	2.669804e-06
TCGA-86-8279-01A-11D-2284-08	605	589	16	459	2.644628e-02	0	coding only	34834024	124	440	3.559738e-06	1.263133e-05
TCGA-86-8280-01A-11D-2284-08	68	66	2	53	2.941176e-02	0	coding only	34834024	12	52	3.444908e-07	1.492793e-06
TCGA-86-8281-01A-11D-2284-08	335	319	16	242	4.776119e-02	1	exome+100bp flanks	34834024	77	232	2.210482e-06	6.660155e-06
TCGA-86-8358-01A-11D-2323-08	1291	1245	46	961	3.563129e-02	1	exome+100bp flanks	34834024	275	915	7.894580e-06	2.626742e-05
TCGA-86-8359-01A-11D-2323-08	196	192	4	147	2.040816e-02	0	coding only	34834024	43	138	1.234425e-06	3.961644e-06
TCGA-86-8585-01A-11D-2393-08	679	655	24	529	3.534610e-02	1	exome+100bp flanks	34834024	122	506	3.502323e-06	1.452603e-05
TCGA-86-8668-01A-11D-2393-08	46	46	0	34	0	1	exome+100bp flanks	34834024	11	33	3.157832e-07	9.473496e-07
TCGA-86-8669-01A-11D-2393-08	163	158	5	117	3.067485e-02	1	exome+100bp flanks	34834024	38	111	1.090887e-06	3.186540e-06
TCGA-86-8671-01A-11D-2393-08	72	71	1	52	1.388889e-02	0	coding only	34834024	19	49	5.454437e-07	1.406671e-06
TCGA-86-8672-01A-21D-2393-08	387	366	21	269	5.426357e-02	1	exome+100bp flanks	34834024	91	256	2.612388e-06	7.349137e-06
TCGA-86-8673-01A-11D-2393-08	600	583	17	453	2.833333e-02	0	coding only	34834024	123	425	3.531030e-06	1.220072e-05
TCGA-86-8674-01A-21D-2393-08	372	360	12	273	3.225806e-02	1	exome+100bp flanks	34834024	85	259	2.440143e-06	7.435259e-06
TCGA-86-A456-01A-11D-A24D-08	450	437	13	340	2.888889e-02	0	coding only	34834024	89	325	2.554973e-06	9.329959e-06
TCGA-86-A4JF-01A-11D-A24P-08	1714	1666	48	1265	2.800467e-02	0	coding only	34834024	381	1194	1.093758e-05	3.427683e-05
TCGA-86-A4P7-01A-11D-A24P-08	100	93	7	76	7.000000e-02	1	exome+100bp flanks	34834024	16	73	4.593210e-07	2.095652e-06
TCGA-86-A4P8-01A-11D-A24P-08	5	4	1	2	2.000000e-01	1	exome+100bp flanks	34834024	1	2	2.870756e-08	5.741513e-08
TCGA-91-6828-01A-11D-1855-08	372	363	9	302	2.419355e-02	0	coding only	34834024	58	288	1.665039e-06	8.267779e-06
TCGA-91-6829-01A-21D-1855-08	771	750	21	590	2.723735e-02	0	coding only	34834024	154	562	4.420965e-06	1.613365e-05
TCGA-91-6830-01A-11D-1945-08	369	357	12	265	3.252033e-02	1	exome+100bp flanks	34834024	89	253	2.554973e-06	7.263014e-06
TCGA-91-6831-01A-11D-1855-08	356	342	14	266	3.932584e-02	1	exome+100bp flanks	34834024	72	255	2.066945e-06	7.320429e-06
TCGA-91-6835-01A-11D-1855-08	129	118	11	88	8.527132e-02	1	exome+100bp flanks	34834024	27	84	7.751042e-07	2.411435e-06
TCGA-91-6836-01A-21D-1855-08	535	509	26	393	4.859813e-02	1	exome+100bp flanks	34834024	109	369	3.129125e-06	1.059309e-05
TCGA-91-6840-01A-11D-1945-08	139	134	5	106	3.597122e-02	1	exome+100bp flanks	34834024	26	98	7.463967e-07	2.813341e-06
TCGA-91-6847-01A-11D-1945-08	111	107	4	70	3.603604e-02	1	exome+100bp flanks	34834024	35	64	1.004765e-06	1.837284e-06
TCGA-91-6848-01A-11D-1945-08	712	687	25	519	3.511236e-02	1	exome+100bp flanks	34834024	162	492	4.650625e-06	1.412412e-05
TCGA-91-6849-01A-11D-1945-08	145	136	9	106	6.206897e-02	1	exome+100bp flanks	34834024	28	97	8.038118e-07	2.784634e-06
TCGA-91-7771-01A-11D-2167-08	279	272	7	215	2.508961e-02	0	coding only	34834024	55	203	1.578916e-06	5.827636e-06
TCGA-91-8496-01A-11D-2393-08	56	50	6	38	1.071429e-01	1	exome+100bp flanks	34834024	11	34	3.157832e-07	9.760572e-07
TCGA-91-8497-01A-11D-2393-08	66	61	5	47	7.575758e-02	1	exome+100bp flanks	34834024	12	47	3.444908e-07	1.349256e-06
TCGA-91-8499-01A-11D-2393-08	380	360	20	283	5.263158e-02	1	exome+100bp flanks	34834024	69	269	1.980822e-06	7.722335e-06
TCGA-91-A4BC-01A-11D-A24D-08	564	541	23	416	4.078014e-02	1	exome+100bp flanks	34834024	120	393	3.444908e-06	1.128207e-05
TCGA-91-A4BD-01A-11D-A24D-08	29	24	5	17	1.724138e-01	1	exome+100bp flanks	34834024	7	17	2.009530e-07	4.880286e-07
TCGA-93-7347-01A-11D-2184-08	154	146	8	114	5.194805e-02	1	exome+100bp flanks	34834024	31	108	8.899345e-07	3.100417e-06
TCGA-93-7348-01A-21D-2036-08	135	127	8	105	5.925926e-02	1	exome+100bp flanks	34834024	22	99	6.315664e-07	2.842049e-06
TCGA-93-8067-01A-11D-2284-08	639	619	20	464	3.129890e-02	1	exome+100bp flanks	34834024	143	437	4.105182e-06	1.254521e-05
TCGA-93-A4JN-01A-11D-A24P-08	102	97	5	76	4.901961e-02	1	exome+100bp flanks	34834024	21	74	6.028589e-07	2.124360e-06
TCGA-93-A4JO-01A-21D-A24P-08	69	65	4	53	5.797101e-02	1	exome+100bp flanks	34834024	11	50	3.157832e-07	1.435378e-06
TCGA-93-A4JP-01A-11D-A24P-08	88	81	7	57	7.954545e-02	1	exome+100bp flanks	34834024	22	54	6.315664e-07	1.550208e-06
TCGA-93-A4JQ-01A-11D-A24P-08	145	141	4	107	2.758621e-02	0	coding only	34834024	32	100	9.186421e-07	2.870756e-06
TCGA-95-7039-01A-11D-1945-08	1521	1465	56	1144	3.681788e-02	1	exome+100bp flanks	34834024	309	1089	8.870638e-06	3.126254e-05
TCGA-95-7043-01A-11D-1945-08	1287	1251	36	988	2.797203e-02	0	coding only	34834024	251	937	7.205599e-06	2.689899e-05
TCGA-95-7562-01A-11D-2238-08	488	464	24	391	4.918033e-02	1	exome+100bp flanks	34834024	70	374	2.009530e-06	1.073663e-05
TCGA-95-7567-01A-11D-2063-08	1133	1102	31	839	2.736099e-02	0	coding only	34834024	249	799	7.148184e-06	2.293734e-05
TCGA-95-7944-01A-11D-2184-08	310	304	6	222	1.935484e-02	0	coding only	34834024	77	215	2.210482e-06	6.172126e-06
TCGA-95-7947-01A-11D-2184-08	629	610	19	462	3.020668e-02	1	exome+100bp flanks	34834024	137	437	3.932936e-06	1.254521e-05
TCGA-95-7948-01A-11D-2184-08	189	183	6	152	3.174603e-02	1	exome+100bp flanks	34834024	30	146	8.612269e-07	4.191304e-06
TCGA-95-8039-01A-11D-2238-08	130	130	0	101	0	0	coding only	34834024	29	93	8.325194e-07	2.669804e-06
TCGA-95-8494-01A-11D-2323-08	134	126	8	87	5.970149e-02	1	exome+100bp flanks	34834024	37	83	1.062180e-06	2.382728e-06
TCGA-95-A4VK-01A-11D-A25L-08	297	282	15	216	5.050505e-02	1	exome+100bp flanks	34834024	65	204	1.865992e-06	5.856343e-06
TCGA-95-A4VN-01A-11D-A25L-08	580	558	22	435	3.793103e-02	1	exome+100bp flanks	34834024	120	411	3.444908e-06	1.179881e-05
TCGA-95-A4VP-01A-21D-A25L-08	159	149	10	116	6.289308e-02	1	exome+100bp flanks	34834024	33	107	9.473496e-07	3.071709e-06
TCGA-97-7546-01A-11D-2036-08	338	328	10	254	2.958580e-02	0	coding only	34834024	73	245	2.095652e-06	7.033353e-06
TCGA-97-7547-01A-11D-2036-08	224	215	9	156	4.017857e-02	1	exome+100bp flanks	34834024	54	151	1.550208e-06	4.334842e-06
TCGA-97-7552-01A-11D-2036-08	49	45	4	29	8.163265e-02	1	exome+100bp flanks	34834024	16	25	4.593210e-07	7.176891e-07
TCGA-97-7553-01A-21D-2036-08	79	69	10	57	1.265823e-01	1	exome+100bp flanks	34834024	12	54	3.444908e-07	1.550208e-06
TCGA-97-7554-01A-11D-2036-08	545	528	17	406	3.119266e-02	1	exome+100bp flanks	34834024	118	389	3.387493e-06	1.116724e-05
TCGA-97-7937-01A-11D-2167-08	565	547	18	445	3.185841e-02	1	exome+100bp flanks	34834024	97	423	2.784634e-06	1.214330e-05
TCGA-97-7938-01A-11D-2167-08	485	470	15	365	3.092784e-02	1	exome+100bp flanks	34834024	101	346	2.899464e-06	9.932817e-06
TCGA-97-7941-01A-11D-2184-08	129	122	7	91	5.426357e-02	1	exome+100bp flanks	34834024	29	86	8.325194e-07	2.468851e-06
TCGA-97-8171-01A-11D-2284-08	86	79	7	62	8.139535e-02	1	exome+100bp flanks	34834024	17	54	4.880286e-07	1.550208e-06
TCGA-97-8172-01A-11D-2284-08	325	316	9	247	2.769231e-02	0	coding only	34834024	65	237	1.865992e-06	6.803693e-06
TCGA-97-8174-01A-11D-2284-08	217	208	9	161	4.147465e-02	1	exome+100bp flanks	34834024	44	148	1.263133e-06	4.248720e-06
TCGA-97-8175-01A-11D-2284-08	61	54	7	40	1.147541e-01	1	exome+100bp flanks	34834024	13	38	3.731983e-07	1.090887e-06
TCGA-97-8176-01A-11D-2393-08	203	187	16	140	7.881773e-02	1	exome+100bp flanks	34834024	45	132	1.291840e-06	3.789399e-06
TCGA-97-8177-01A-11D-2284-08	89	81	8	57	8.988764e-02	1	exome+100bp flanks	34834024	23	55	6.602740e-07	1.578916e-06
TCGA-97-8179-01A-11D-2284-08	215	202	13	162	6.046512e-02	1	exome+100bp flanks	34834024	38	151	1.090887e-06	4.334842e-06
TCGA-97-8547-01A-11D-2393-08	86	84	2	64	2.325581e-02	0	coding only	34834024	19	62	5.454437e-07	1.779869e-06
TCGA-97-8552-01A-11D-2393-08	39	33	6	28	1.538462e-01	1	exome+100bp flanks	34834024	5	28	1.435378e-07	8.038118e-07
TCGA-97-A4LX-01A-11D-A24P-08	222	209	13	158	5.855856e-02	1	exome+100bp flanks	34834024	51	151	1.464086e-06	4.334842e-06
TCGA-97-A4M0-01A-11D-A24P-08	470	452	18	347	3.829787e-02	1	exome+100bp flanks	34834024	100	329	2.870756e-06	9.444789e-06
TCGA-97-A4M1-01A-11D-A24P-08	57	56	1	44	1.754386e-02	0	coding only	34834024	11	43	3.157832e-07	1.234425e-06
TCGA-97-A4M2-01A-12D-A24P-08	43	39	4	33	9.302326e-02	1	exome+100bp flanks	34834024	6	31	1.722454e-07	8.899345e-07
TCGA-97-A4M3-01A-11D-A24P-08	245	233	12	193	4.897959e-02	1	exome+100bp flanks	34834024	38	181	1.090887e-06	5.196069e-06
TCGA-97-A4M5-01A-11D-A24P-08	190	182	8	145	4.210526e-02	1	exome+100bp flanks	34834024	34	138	9.760572e-07	3.961644e-06
TCGA-97-A4M6-01A-11D-A24P-08	48	44	4	32	8.333333e-02	1	exome+100bp flanks	34834024	12	31	3.444908e-07	8.899345e-07
TCGA-97-A4M7-01A-11D-A24P-08	382	372	10	283	2.617801e-02	0	coding only	34834024	85	267	2.440143e-06	7.664920e-06
TCGA-99-7458-01A-11D-2036-08	570	558	12	434	2.105263e-02	0	coding only	34834024	121	413	3.473615e-06	1.185622e-05
TCGA-99-8025-01A-11D-2238-08	601	578	23	447	3.826955e-02	1	exome+100bp flanks	34834024	126	422	3.617153e-06	1.211459e-05
TCGA-99-8028-01A-11D-2238-08	655	641	14	495	2.137405e-02	0	coding only	34834024	142	471	4.076474e-06	1.352126e-05
TCGA-99-8032-01A-11D-2238-08	531	514	17	401	3.201507e-02	1	exome+100bp flanks	34834024	111	381	3.186540e-06	1.093758e-05
TCGA-99-8033-01A-11D-2238-08	234	229	5	178	2.136752e-02	0	coding only	34834024	50	170	1.435378e-06	4.880286e-06
TCGA-J2-8192-01A-11D-2238-08	98	93	5	73	5.102041e-02	1	exome+100bp flanks	34834024	20	70	5.741513e-07	2.009530e-06
TCGA-J2-8194-01A-11D-2238-08	206	197	9	151	4.368932e-02	1	exome+100bp flanks	34834024	44	147	1.263133e-06	4.220012e-06
TCGA-J2-A4AD-01A-11D-A24D-08	398	391	7	299	1.758794e-02	0	coding only	34834024	88	283	2.526266e-06	8.124241e-06
TCGA-J2-A4AE-01A-21D-A24D-08	67	63	4	45	5.970149e-02	1	exome+100bp flanks	34834024	17	39	4.880286e-07	1.119595e-06
TCGA-J2-A4AG-01A-11D-A24D-08	124	112	12	83	9.677419e-02	1	exome+100bp flanks	34834024	28	79	8.038118e-07	2.267898e-06
TCGA-L4-A4E5-01A-11D-A24P-08	405	385	20	296	4.938272e-02	1	exome+100bp flanks	34834024	88	273	2.526266e-06	7.837165e-06
TCGA-L4-A4E6-01A-11D-A24D-08	25	22	3	12	1.200000e-01	1	exome+100bp flanks	34834024	9	11	2.583681e-07	3.157832e-07
TCGA-L9-A443-01A-12D-A24D-08	290	285	5	235	1.724138e-02	0	coding only	34834024	49	217	1.406671e-06	6.229542e-06
TCGA-L9-A444-01A-21D-A24D-08	681	657	24	500	3.524229e-02	1	exome+100bp flanks	34834024	153	471	4.392257e-06	1.352126e-05
TCGA-MN-A4N1-01A-11D-A24P-08	558	535	23	418	4.121864e-02	1	exome+100bp flanks	34834024	111	402	3.186540e-06	1.154044e-05
TCGA-MN-A4N4-01A-12D-A24P-08	1820	1747	73	1367	4.010989e-02	1	exome+100bp flanks	34834024	358	1305	1.027731e-05	3.746337e-05
TCGA-MN-A4N5-01A-11D-A24P-08	530	506	24	400	4.528302e-02	1	exome+100bp flanks	34834024	100	383	2.870756e-06	1.099500e-05
TCGA-MP-A4SV-01A-11D-A24P-08	424	408	16	314	3.773585e-02	1	exome+100bp flanks	34834024	94	293	2.698511e-06	8.411316e-06
TCGA-MP-A4SW-01A-21D-A24P-08	92	86	6	62	6.521739e-02	1	exome+100bp flanks	34834024	23	60	6.602740e-07	1.722454e-06
TCGA-MP-A4SY-01A-21D-A24P-08	205	191	14	158	6.829268e-02	1	exome+100bp flanks	34834024	30	152	8.612269e-07	4.363550e-06
TCGA-MP-A4T2-01A-11D-A24P-08	97	90	7	70	7.216495e-02	1	exome+100bp flanks	34834024	18	65	5.167362e-07	1.865992e-06
TCGA-MP-A4T4-01A-11D-A25L-08	477	464	13	364	2.725367e-02	0	coding only	34834024	94	344	2.698511e-06	9.875402e-06
TCGA-MP-A4T6-01A-32D-A25L-08	94	90	4	64	4.255319e-02	1	exome+100bp flanks	34834024	26	62	7.463967e-07	1.779869e-06
TCGA-MP-A4T7-01A-11D-A24P-08	161	153	8	127	4.968944e-02	1	exome+100bp flanks	34834024	25	121	7.176891e-07	3.473615e-06
TCGA-MP-A4T8-01A-11D-A24P-08	147	134	13	109	8.843537e-02	1	exome+100bp flanks	34834024	24	104	6.889816e-07	2.985587e-06
TCGA-MP-A4T9-01A-11D-A24P-08	52	46	6	33	1.153846e-01	1	exome+100bp flanks	34834024	13	31	3.731983e-07	8.899345e-07
TCGA-MP-A4TA-01A-21D-A24P-08	441	419	22	316	4.988662e-02	1	exome+100bp flanks	34834024	99	307	2.842049e-06	8.813222e-06
TCGA-MP-A4TC-01A-11D-A24P-08	310	294	16	225	5.161290e-02	1	exome+100bp flanks	34834024	65	213	1.865992e-06	6.114711e-06
TCGA-MP-A4TD-01A-32D-A25L-08	106	99	7	72	6.603774e-02	1	exome+100bp flanks	34834024	25	67	7.176891e-07	1.923407e-06
TCGA-MP-A4TE-01A-22D-A25L-08	168	161	7	127	4.166667e-02	1	exome+100bp flanks	34834024	32	120	9.186421e-07	3.444908e-06
TCGA-MP-A4TF-01A-11D-A25L-08	515	499	16	383	3.106796e-02	1	exome+100bp flanks	34834024	113	367	3.243955e-06	1.053568e-05
TCGA-MP-A4TH-01A-31D-A25L-08	140	133	7	109	5.000000e-02	1	exome+100bp flanks	34834024	24	103	6.889816e-07	2.956879e-06
TCGA-MP-A4TI-01A-21D-A24P-08	312	297	15	208	4.807692e-02	1	exome+100bp flanks	34834024	85	197	2.440143e-06	5.655390e-06
TCGA-MP-A4TK-01A-11D-A24P-08	426	412	14	320	3.286385e-02	1	exome+100bp flanks	34834024	89	303	2.554973e-06	8.698392e-06
TCGA-MP-A5C7-01A-11D-A25L-08	95	88	7	56	7.368421e-02	1	exome+100bp flanks	34834024	29	51	8.325194e-07	1.464086e-06
TCGA-NJ-A4YF-01A-12D-A25L-08	734	697	37	548	5.040872e-02	1	exome+100bp flanks	34834024	144	521	4.133889e-06	1.495664e-05
TCGA-NJ-A4YG-01A-22D-A25L-08	182	173	9	134	4.945055e-02	1	exome+100bp flanks	34834024	34	129	9.760572e-07	3.703276e-06
TCGA-NJ-A4YI-01A-11D-A25L-08	533	514	19	391	3.564728e-02	1	exome+100bp flanks	34834024	116	378	3.330078e-06	1.085146e-05
TCGA-NJ-A4YP-01A-11D-A25L-08	657	637	20	473	3.044140e-02	1	exome+100bp flanks	34834024	152	445	4.363550e-06	1.277487e-05
TCGA-NJ-A4YQ-01A-11D-A25L-08	1356	1303	53	1012	3.908555e-02	1	exome+100bp flanks	34834024	278	961	7.980703e-06	2.758797e-05
TCGA-NJ-A55A-01A-11D-A25L-08	148	142	6	107	4.054054e-02	1	exome+100bp flanks	34834024	35	105	1.004765e-06	3.014294e-06
TCGA-NJ-A55O-01A-11D-A25L-08	176	169	7	133	3.977273e-02	1	exome+100bp flanks	34834024	35	125	1.004765e-06	3.588446e-06
TCGA-NJ-A55R-01A-11D-A25L-08	320	311	9	232	2.812500e-02	0	coding only	34834024	75	219	2.153067e-06	6.286957e-06
TCGA-O1-A52J-01A-11D-A25L-08	217	208	9	159	4.147465e-02	1	exome+100bp flanks	34834024	45	149	1.291840e-06	4.277427e-06