		Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	10 (11%)	77	0.01428	0.195	0.78203	0.937	0.76849	0.937	0.68337	0.906	0.44042	0.804	0.8193	0.955	0.23348	0.643	0.3418	0.742
1q gain	21 (24%)	66	0.0094099	0.154	0.03169	0.303	0.10377	0.484	0.15705	0.544	0.2315	0.64	0.20606	0.606	0.57443	0.879	0.50952	0.846
2p gain	4 (5%)	83	0.10348	0.484	0.37421	0.76	0.60725	0.896	0.78494	0.937	0.12188	0.506	0.14263	0.524	0.35673	0.747	0.18186	0.576
2q gain	7 (8%)	80	0.5163	0.847	0.45996	0.814	0.355	0.747	0.42501	0.789	0.24696	0.665	0.91256	0.978	0.13322	0.52	0.063799	0.445
3p gain	17 (20%)	70	0.00063999	0.0253	0.93044	0.984	0.61939	0.905	0.6238	0.906	0.88873	0.973	0.88414	0.973	0.44066	0.804	0.60573	0.896
3q gain	19 (22%)	68	0.00012	0.0101	0.76696	0.937	0.6698	0.906	0.3892	0.763	0.45456	0.813	0.46611	0.814	0.32968	0.742	0.53758	0.855
5p gain	24 (28%)	63	0.19698	0.606	0.33182	0.742	0.51443	0.846	0.5802	0.88	0.03689	0.331	0.43382	0.8	0.49918	0.844	0.44769	0.806
5q gain	15 (17%)	72	0.062159	0.444	0.35666	0.747	0.30237	0.726	0.69034	0.906	0.15089	0.538	0.37025	0.758	0.34019	0.742	0.34488	0.742
6p gain	7 (8%)	80	0.076129	0.455	0.094379	0.482	0.068189	0.445	0.38361	0.763	0.071069	0.445	0.96466	1	0.88406	0.973	0.71479	0.92
6q gain	4 (5%)	83	0.1031	0.484	0.63414	0.906	0.40023	0.769	0.6935	0.906	0.67141	0.906	0.93615	0.984	0.67593	0.906	0.75582	0.932
7p gain	25 (29%)	62	0.0145	0.195	0.39447	0.764	0.095449	0.483	0.071249	0.445	0.097389	0.484	0.04267	0.366	0.32104	0.74	0.02361	0.257
7q gain	22 (25%)	65	0.02424	0.257	0.44654	0.806	0.14259	0.524	0.02997	0.291	0.22399	0.631	0.18102	0.576	0.52625	0.854	0.11618	0.498
8p gain	12 (14%)	75	0.04478	0.37	0.52464	0.854	0.66614	0.906	0.75857	0.933	0.13939	0.524	0.03892	0.339	0.59895	0.893	0.24908	0.666
8q gain	14 (16%)	73	0.04865	0.389	0.93548	0.984	0.69924	0.91	0.74772	0.932	0.26264	0.673	0.58628	0.883	0.74354	0.932	0.54289	0.859
9p gain	3 (3%)	84	0.70196	0.911	0.5359	0.855	0.31784	0.74	1	1	0.11367	0.498	0.80935	0.954	0.10089	0.484	0.02488	0.257
9q gain	4 (5%)	83	0.50077	0.844	0.071479	0.445	0.47578	0.821	0.63543	0.906	0.057649	0.423	0.46855	0.814	0.81321	0.955	0.69099	0.906
10p gain	3 (3%)	84	0.080159	0.456	0.7754	0.937	0.8812	0.973	0.9179	0.978	1	1	0.26353	0.673	1	1	0.88826	0.973
10q gain	3 (3%)	84	0.079859	0.456	0.7738	0.937	0.88286	0.973	0.91965	0.978	1	1	0.26495	0.673	1	1	0.8874	0.973
11p gain	11 (13%)	76	0.0077799	0.132	0.66111	0.906	0.29303	0.72	0.091729	0.482	0.38765	0.763	0.66804	0.906	1	1	0.82439	0.955
11q gain	12 (14%)	75	0.0098599	0.154	0.37995	0.763	0.066429	0.445	0.03474	0.321	0.52814	0.854	0.55022	0.869	0.56926	0.873	0.4825	0.83
12p gain	18 (21%)	69	3e-04	0.0161	0.81359	0.955	0.89214	0.973	0.85424	0.963	0.75096	0.932	0.9214	0.978	1	1	0.86194	0.969
12q gain	18 (21%)	69	0.00019	0.0125	0.81601	0.955	0.89218	0.973	0.8538	0.963	0.75063	0.932	0.92072	0.978	1	1	0.86225	0.969
13q gain	5 (6%)	82	0.42388	0.789	0.097539	0.484	0.02653	0.262	0.04545	0.37	0.61008	0.896	0.42842	0.793	0.85124	0.963	0.38884	0.763
15q gain	11 (13%)	76	0.02418	0.257	0.00434	0.0894	0.01982	0.244	0.12805	0.514	0.00323	0.0824	0.077479	0.456	0.77377	0.937	0.22708	0.634
16p gain	17 (20%)	70	0.0069199	0.123	0.56552	0.872	0.01205	0.178	0.067069	0.445	0.17719	0.576	0.1862	0.586	0.63134	0.906	0.079969	0.456
16q gain	16 (18%)	71	0.00279	0.0798	0.80446	0.952	0.02261	0.257	0.10791	0.494	0.56173	0.871	0.65882	0.906	0.87595	0.973	0.37816	0.763
17p gain	7 (8%)	80	0.21835	0.624	1	1	0.4415	0.804	0.68363	0.906	0.69523	0.907	0.11329	0.498	0.46874	0.814	0.24449	0.665
17q gain	17 (20%)	70	0.093929	0.482	0.31822	0.74	0.02058	0.244	0.04558	0.37	0.14518	0.524	0.86862	0.971	0.74189	0.932	0.84478	0.963
18p gain	8 (9%)	79	0.067859	0.445	0.313	0.735	0.11555	0.498	0.17988	0.576	0.12155	0.506	0.13694	0.523	0.6043	0.896	0.13431	0.52
18q gain	4 (5%)	83	0.087139	0.478	1	1	0.2967	0.723	0.63429	0.906	0.03247	0.305	0.083779	0.468	0.60704	0.896	0.1944	0.603
19p gain	14 (16%)	73	0.27484	0.691	0.0352	0.321	0.16292	0.551	0.17423	0.572	0.46492	0.814	0.17477	0.572	0.69307	0.906	0.20537	0.606
19q gain	10 (11%)	77	0.80668	0.953	0.11963	0.506	0.32672	0.741	0.68242	0.906	0.53546	0.855	0.7076	0.915	0.53877	0.855	0.89506	0.974
20p gain	8 (9%)	79	0.69208	0.906	0.7293	0.928	0.38129	0.763	0.78263	0.937	0.58287	0.88	0.44078	0.804	0.64086	0.906	0.66863	0.906
20q gain	10 (11%)	77	0.2055	0.606	0.90656	0.978	0.6394	0.906	0.93744	0.984	0.32394	0.74	0.7486	0.932	0.52493	0.854	0.59383	0.89
21q gain	6 (7%)	81	0.2518	0.668	0.61009	0.896	0.22202	0.629	0.21833	0.624	0.074369	0.454	0.34444	0.742	0.03863	0.339	0.15964	0.546
xp gain	7 (8%)	80	0.13361	0.52	0.35845	0.747	0.24685	0.665	0.77843	0.937	0.78598	0.937	0.96678	1	0.78395	0.937	0.90528	0.978
xq gain	6 (7%)	81	0.23008	0.639	0.50065	0.844	0.15345	0.538	0.64579	0.906	0.48507	0.832	0.83704	0.96	1	1	0.87984	0.973
1p loss	8 (9%)	79	0.02432	0.257	0.22573	0.633	0.41978	0.786	0.9129	0.978	0.28439	0.707	0.20571	0.606	0.053829	0.409	0.64713	0.906
2p loss	6 (7%)	81	0.68713	0.906	0.38415	0.763	0.25633	0.673	0.069449	0.445	0.075289	0.455	0.58234	0.88	0.84951	0.963	0.15937	0.546
2q loss	4 (5%)	83	0.63532	0.906	0.34348	0.742	0.29664	0.723	0.50648	0.845	0.55869	0.871	0.39188	0.764	1	1	1	1
3p loss	8 (9%)	79	0.3663	0.756	0.091039	0.482	0.16765	0.561	0.11858	0.505	0.46249	0.814	0.71236	0.919	0.19909	0.606	0.062199	0.444
3q loss	6 (7%)	81	0.72094	0.924	0.090359	0.482	0.18013	0.576	0.41591	0.784	1	1	0.50604	0.845	0.656	0.906	0.62152	0.906
4p loss	32 (37%)	55	2e-05	0.00395	0.32291	0.74	0.27171	0.687	0.0041	0.0894	0.12856	0.514	0.33369	0.742	0.38736	0.763	0.5135	0.846
4q loss	33 (38%)	54	2e-05	0.00395	0.10032	0.484	0.00384	0.0894	0.00042	0.0191	0.057909	0.423	0.14438	0.524	0.7753	0.937	0.092129	0.482
5p loss	4 (5%)	83	0.50049	0.844	0.69257	0.906	0.36834	0.757	0.63649	0.906	0.35728	0.747	0.9364	0.984	1	1	0.44473	0.805
5q loss	9 (10%)	78	0.02563	0.257	0.83796	0.96	0.49482	0.844	0.10468	0.484	0.36595	0.756	0.668	0.906	0.41026	0.78	0.91602	0.978
6p loss	9 (10%)	78	0.83601	0.96	0.32076	0.74	0.24982	0.666	0.50303	0.844	0.90316	0.978	0.17129	0.566	0.20663	0.606	0.11046	0.495
6q loss	29 (33%)	58	0.00334	0.0824	0.21486	0.624	0.39443	0.764	0.65132	0.906	0.65187	0.906	0.52164	0.853	0.11231	0.498	0.081359	0.459
8p loss	13 (15%)	74	0.87121	0.971	0.69016	0.906	0.66488	0.906	0.74956	0.932	0.32761	0.741	0.74953	0.932	0.74631	0.932	0.28241	0.705
8q loss	4 (5%)	83	0.10263	0.484	0.3751	0.76	0.51142	0.846	0.55754	0.871	0.16426	0.553	0.12226	0.506	1	1	0.1038	0.484
9p loss	28 (32%)	59	5e-05	0.00592	0.01518	0.2	0.04322	0.366	0.01111	0.169	0.95716	1	0.49274	0.843	0.91527	0.978	0.15349	0.538
9q loss	21 (24%)	66	0.00164	0.0571	0.20532	0.606	0.14285	0.524	0.16105	0.548	0.95019	0.996	0.53633	0.855	0.57651	0.879	0.26335	0.673
10p loss	24 (28%)	63	0.00453	0.0894	0.00072999	0.027	0.13208	0.52	0.13568	0.522	0.86996	0.971	0.30498	0.726	0.70728	0.915	0.73104	0.929
10q loss	19 (22%)	68	0.02315	0.257	0.01648	0.212	0.50184	0.844	0.32184	0.74	0.25714	0.673	0.72025	0.924	1	1	0.83713	0.96
11p loss	4 (5%)	83	0.68155	0.906	0.82611	0.955	0.29922	0.725	0.265	0.673	0.82021	0.955	0.39468	0.764	0.56444	0.872	0.91076	0.978
11q loss	5 (6%)	82	0.57772	0.879	0.61791	0.905	0.00424	0.0894	0.00283	0.0798	0.84585	0.963	0.3557	0.747	0.56155	0.871	0.91382	0.978
12p loss	4 (5%)	83	0.2584	0.673	0.071069	0.445	0.47464	0.821	0.46401	0.814	0.29052	0.72	0.81736	0.955	0.46525	0.814	0.59916	0.893
13q loss	33 (38%)	54	0.10457	0.484	0.73775	0.932	0.169	0.562	0.66228	0.906	0.75348	0.932	0.18775	0.588	0.02039	0.244	0.46874	0.814
14q loss	35 (40%)	52	4e-04	0.0191	0.35473	0.747	0.00023	0.0136	9.9999e-06	0.00395	0.04951	0.391	0.00059999	0.0253	0.014	0.195	0.00174	0.0572
15q loss	11 (13%)	76	0.11483	0.498	0.75937	0.933	0.27554	0.691	0.29991	0.725	0.3281	0.741	0.30431	0.726	0.74612	0.932	0.40489	0.776
16p loss	7 (8%)	80	0.0095999	0.154	0.19338	0.603	0.53091	0.854	0.34418	0.742	0.41714	0.784	0.3622	0.752	1	1	1	1
16q loss	10 (11%)	77	0.051219	0.396	0.90702	0.978	0.21807	0.624	0.45341	0.813	0.69205	0.906	0.12648	0.514	1	1	0.87833	0.973
17p loss	23 (26%)	64	0.34867	0.745	0.38135	0.763	0.76435	0.937	0.62791	0.906	0.15031	0.538	0.13961	0.524	0.5114	0.846	0.26084	0.673
17q loss	7 (8%)	80	0.55952	0.871	0.15523	0.541	0.66933	0.906	0.72862	0.928	0.24648	0.665	0.52951	0.854	0.42155	0.787	0.21363	0.623
18p loss	9 (10%)	78	0.14003	0.524	0.78106	0.937	0.67504	0.906	0.69143	0.906	0.33289	0.742	0.75455	0.932	0.39957	0.769	0.6859	0.906
18q loss	14 (16%)	73	0.41106	0.78	0.68655	0.906	0.84683	0.963	0.86459	0.969	0.1235	0.508	0.093589	0.482	0.33838	0.742	0.18088	0.576
19p loss	4 (5%)	83	0.6833	0.906	0.20055	0.606	0.55845	0.871	0.46284	0.814	1	1	0.34837	0.745	0.20322	0.606	0.37134	0.758
19q loss	7 (8%)	80	0.559	0.871	0.051459	0.396	1	1	0.93395	0.984	0.78667	0.937	0.79197	0.94	0.3127	0.735	0.82287	0.955
20p loss	14 (16%)	73	0.02566	0.257	0.10933	0.494	0.14415	0.524	0.5877	0.883	0.33994	0.742	0.72266	0.924	0.56769	0.873	0.12707	0.514
20q loss	3 (3%)	84	0.24008	0.658	0.3409	0.742	0.78927	0.938	0.20288	0.606	0.25803	0.673	0.01846	0.233	1	1	0.4427	0.804
21q loss	11 (13%)	76	0.10906	0.494	0.01296	0.187	0.22017	0.627	0.079779	0.456	0.65848	0.906	0.29315	0.72	0.84791	0.963	0.82556	0.955
22q loss	67 (77%)	20	0.0053399	0.102	4e-05	0.00592	0.056139	0.421	0.00446	0.0894	1	1	0.64515	0.906	0.13351	0.52	0.82998	0.958
xp loss	27 (31%)	60	0.0059899	0.111	9.9999e-05	0.00987	0.068369	0.445	0.0070899	0.123	0.091389	0.482	0.41704	0.784	0.073999	0.454	0.30525	0.726
xq loss	28 (32%)	59	0.00199	0.062	0.00016	0.0118	0.086619	0.478	0.00329	0.0824	0.1518	0.538	0.4084	0.78	0.067959	0.445	0.31148	0.735
