This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 71 focal events and 14 molecular subtypes across 579 patients, 255 significant findings detected with P value < 0.05 and Q value < 0.25.
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amp_1p34.3 cnv correlated to 'CN_CNMF'.
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amp_1q21.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_1q42.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_2p23.2 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_2q31.2 cnv correlated to 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CNMF'.
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amp_3q26.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_4p16.3 cnv correlated to 'MIR_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_4q13.3 cnv correlated to 'CN_CNMF'.
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amp_5p15.33 cnv correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.
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amp_6p22.3 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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amp_7q36.3 cnv correlated to 'CN_CNMF' and 'RPPA_CNMF'.
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amp_8p11.21 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CNMF'.
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amp_8q24.21 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_10p15.3 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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amp_11q14.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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amp_12p13.33 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_12p12.1 cnv correlated to 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_12q15 cnv correlated to 'MRNA_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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amp_14q11.2 cnv correlated to 'MRNA_CNMF' and 'MIR_CHIERARCHICAL'.
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amp_14q32.33 cnv correlated to 'MIR_CHIERARCHICAL' and 'CN_CNMF'.
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amp_15q26.3 cnv correlated to 'CN_CNMF'.
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amp_17q25.3 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_18q11.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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amp_19p13.12 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.
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amp_19q12 cnv correlated to 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CNMF'.
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amp_19q13.2 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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amp_20p13 cnv correlated to 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_20q11.21 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_20q13.33 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_22q12.2 cnv correlated to 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_xp11.23 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_xq28 cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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del_1p36.11 cnv correlated to 'MIR_CNMF' and 'CN_CNMF'.
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del_1q41 cnv correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.
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del_2q22.1 cnv correlated to 'MIR_CHIERARCHICAL'.
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del_2q37.3 cnv correlated to 'MRNA_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_3p26.2 cnv correlated to 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_4q22.1 cnv correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.
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del_4q34.3 cnv correlated to 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
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del_5q12.1 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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del_5q13.2 cnv correlated to 'CN_CNMF'.
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del_6q27 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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del_7p22.1 cnv correlated to 'CN_CNMF'.
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del_8p23.3 cnv correlated to 'MRNA_CNMF', 'MIR_CHIERARCHICAL', and 'CN_CNMF'.
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del_8p21.2 cnv correlated to 'MRNA_CNMF', 'MIR_CHIERARCHICAL', and 'CN_CNMF'.
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del_9p24.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', and 'METHLYATION_CNMF'.
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del_9q34.13 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
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del_10p15.3 cnv correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.
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del_10q24.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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del_11p15.5 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_12q24.33 cnv correlated to 'MRNA_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_13q14.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CNMF'.
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del_14q23.3 cnv correlated to 'CN_CNMF'.
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del_15q11.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_15q15.1 cnv correlated to 'MRNA_CNMF', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_16p13.3 cnv correlated to 'MIR_CHIERARCHICAL'.
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del_16q22.1 cnv correlated to 'MIR_CNMF', 'CN_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_16q23.1 cnv correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
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del_17q11.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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del_18q23 cnv correlated to 'CN_CNMF'.
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del_19p13.3 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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del_19q13.33 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', and 'MRNASEQ_CNMF'.
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del_19q13.43 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_21q22.3 cnv correlated to 'MRNA_CHIERARCHICAL'.
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del_22q13.32 cnv correlated to 'MIR_CNMF', 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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del_xp21.1 cnv correlated to 'METHLYATION_CNMF'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
MIR CNMF |
MIR CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
amp 20q11 21 | 348 (60%) | 231 |
0.00231 (0.0223) |
0.00302 (0.0255) |
0.112 (0.311) |
0.00298 (0.0255) |
1e-05 (0.000221) |
1e-05 (0.000221) |
0.131 (0.34) |
0.0198 (0.102) |
0.00025 (0.00331) |
0.0486 (0.191) |
0.29 (0.525) |
0.00057 (0.00659) |
1 (1.00) |
0.333 (0.571) |
del 15q11 2 | 299 (52%) | 280 |
0.00567 (0.0417) |
0.0366 (0.156) |
0.0103 (0.0661) |
0.00626 (0.0444) |
1e-05 (0.000221) |
4e-05 (0.000723) |
0.468 (0.692) |
0.767 (0.901) |
0.0051 (0.039) |
0.158 (0.385) |
0.0253 (0.122) |
0.01 (0.0648) |
1 (1.00) |
0.373 (0.615) |
amp 20q13 33 | 402 (69%) | 177 |
0.0106 (0.0671) |
0.00088 (0.00961) |
0.684 (0.837) |
0.00136 (0.0144) |
1e-05 (0.000221) |
1e-05 (0.000221) |
0.853 (0.957) |
0.281 (0.517) |
0.00816 (0.0541) |
0.00521 (0.0392) |
0.475 (0.7) |
0.0506 (0.195) |
0.624 (0.806) |
0.0143 (0.0839) |
del 10q24 2 | 251 (43%) | 328 |
0.00293 (0.0255) |
0.00245 (0.0227) |
0.00721 (0.0498) |
0.236 (0.486) |
5e-05 (0.000887) |
0.00229 (0.0223) |
0.0158 (0.0877) |
0.00251 (0.0227) |
0.529 (0.74) |
0.364 (0.609) |
0.0016 (0.0164) |
0.366 (0.611) |
1 (1.00) |
0.779 (0.907) |
del 19q13 33 | 299 (52%) | 280 |
0.00016 (0.00224) |
0.00252 (0.0227) |
0.046 (0.183) |
0.0205 (0.104) |
0.0144 (0.0839) |
0.00247 (0.0227) |
0.029 (0.133) |
0.298 (0.536) |
0.00668 (0.0468) |
0.123 (0.332) |
0.323 (0.56) |
0.128 (0.336) |
0.391 (0.624) |
0.114 (0.312) |
amp 8q24 21 | 461 (80%) | 118 |
1e-05 (0.000221) |
1e-05 (0.000221) |
0.247 (0.492) |
0.00241 (0.0227) |
1e-05 (0.000221) |
0.0044 (0.035) |
0.986 (1.00) |
0.323 (0.56) |
1e-05 (0.000221) |
0.00031 (0.004) |
0.162 (0.387) |
0.099 (0.293) |
0.571 (0.777) |
0.573 (0.777) |
amp 11q14 1 | 257 (44%) | 322 |
0.00536 (0.04) |
0.00402 (0.0325) |
0.773 (0.902) |
0.306 (0.544) |
1e-05 (0.000221) |
0.0022 (0.0217) |
0.381 (0.617) |
0.229 (0.476) |
0.0048 (0.0373) |
0.0265 (0.126) |
0.133 (0.345) |
0.922 (0.999) |
0.0427 (0.173) |
0.434 (0.661) |
amp 12p13 33 | 330 (57%) | 249 |
0.0237 (0.116) |
0.00312 (0.0261) |
0.264 (0.508) |
0.0527 (0.199) |
1e-05 (0.000221) |
0.00015 (0.00216) |
0.195 (0.434) |
0.154 (0.38) |
0.0153 (0.0865) |
0.0321 (0.142) |
0.535 (0.744) |
0.00796 (0.0531) |
0.378 (0.615) |
0.524 (0.735) |
amp 19p13 12 | 315 (54%) | 264 |
0.00035 (0.0044) |
0.00016 (0.00224) |
0.0383 (0.161) |
0.252 (0.496) |
1e-05 (0.000221) |
2e-05 (0.000406) |
0.00029 (0.00379) |
0.00013 (0.00193) |
0.238 (0.488) |
0.464 (0.688) |
0.587 (0.787) |
0.098 (0.292) |
1 (1.00) |
0.478 (0.702) |
del 2q37 3 | 175 (30%) | 404 |
0.0165 (0.0887) |
0.464 (0.688) |
0.635 (0.811) |
0.0273 (0.127) |
3e-05 (0.000552) |
0.0894 (0.274) |
0.746 (0.88) |
0.591 (0.789) |
0.0151 (0.0863) |
0.0026 (0.0231) |
0.0216 (0.108) |
0.0198 (0.102) |
0.323 (0.56) |
0.965 (1.00) |
del 3p26 2 | 209 (36%) | 370 |
0.155 (0.382) |
0.00049 (0.00594) |
0.00589 (0.0427) |
0.0049 (0.0378) |
0.00012 (0.00184) |
0.00054 (0.00639) |
0.97 (1.00) |
0.24 (0.489) |
0.00331 (0.0274) |
0.00928 (0.0607) |
0.631 (0.807) |
0.123 (0.332) |
0.415 (0.646) |
0.941 (1.00) |
del 12q24 33 | 220 (38%) | 359 |
0.00097 (0.0104) |
0.0998 (0.293) |
0.162 (0.387) |
0.0144 (0.0839) |
1e-05 (0.000221) |
0.0196 (0.102) |
0.296 (0.535) |
0.222 (0.47) |
0.0504 (0.195) |
0.0335 (0.146) |
0.015 (0.0861) |
0.00447 (0.035) |
0.646 (0.818) |
1 (1.00) |
del 15q15 1 | 363 (63%) | 216 |
0.026 (0.124) |
0.06 (0.215) |
0.0217 (0.108) |
0.00298 (0.0255) |
1e-05 (0.000221) |
1e-05 (0.000221) |
0.159 (0.385) |
0.153 (0.38) |
0.0109 (0.068) |
0.498 (0.72) |
0.395 (0.625) |
0.00193 (0.0192) |
0.204 (0.445) |
0.143 (0.365) |
amp 1q42 2 | 322 (56%) | 257 |
0.0236 (0.116) |
0.0273 (0.127) |
0.883 (0.976) |
0.00755 (0.0514) |
1e-05 (0.000221) |
7e-05 (0.00118) |
0.255 (0.497) |
0.123 (0.332) |
0.507 (0.728) |
0.32 (0.56) |
0.266 (0.51) |
0.00254 (0.0227) |
1 (1.00) |
0.511 (0.728) |
amp 3q26 2 | 485 (84%) | 94 |
0.00897 (0.059) |
0.0266 (0.126) |
0.818 (0.935) |
0.279 (0.514) |
1e-05 (0.000221) |
0.0341 (0.147) |
0.407 (0.64) |
0.277 (0.514) |
0.00706 (0.0491) |
0.0113 (0.0704) |
0.124 (0.332) |
0.0677 (0.234) |
1 (1.00) |
0.578 (0.779) |
amp 12p12 1 | 313 (54%) | 266 |
0.128 (0.336) |
0.306 (0.544) |
0.902 (0.986) |
0.0399 (0.167) |
1e-05 (0.000221) |
3e-05 (0.000552) |
0.615 (0.804) |
0.0912 (0.276) |
0.0116 (0.0715) |
0.3 (0.536) |
0.447 (0.674) |
0.00519 (0.0392) |
0.391 (0.624) |
0.0421 (0.173) |
amp 20p13 | 317 (55%) | 262 |
0.189 (0.425) |
0.00539 (0.04) |
0.208 (0.45) |
0.0328 (0.144) |
1e-05 (0.000221) |
1e-05 (0.000221) |
0.322 (0.56) |
0.573 (0.777) |
0.0162 (0.0887) |
0.351 (0.592) |
0.251 (0.496) |
0.00063 (0.00712) |
1 (1.00) |
0.936 (1.00) |
del 13q14 2 | 364 (63%) | 215 |
0.0107 (0.0675) |
0.0157 (0.0877) |
0.613 (0.804) |
0.0426 (0.173) |
0.00019 (0.00262) |
3e-05 (0.000552) |
0.00173 (0.0175) |
0.0512 (0.196) |
0.1 (0.293) |
0.681 (0.834) |
0.377 (0.615) |
0.37 (0.612) |
0.675 (0.828) |
0.248 (0.492) |
amp 2p23 2 | 252 (44%) | 327 |
0.331 (0.569) |
0.0136 (0.0812) |
0.755 (0.888) |
0.168 (0.393) |
1e-05 (0.000221) |
0.00445 (0.035) |
0.142 (0.364) |
0.212 (0.457) |
0.0321 (0.142) |
0.0199 (0.102) |
0.918 (0.997) |
0.204 (0.445) |
1 (1.00) |
0.673 (0.828) |
amp 2q31 2 | 262 (45%) | 317 |
0.114 (0.312) |
0.173 (0.4) |
0.0338 (0.147) |
0.0296 (0.134) |
1e-05 (0.000221) |
0.00769 (0.052) |
0.048 (0.189) |
0.32 (0.56) |
0.152 (0.38) |
0.271 (0.51) |
0.29 (0.525) |
0.0855 (0.271) |
0.67 (0.828) |
0.886 (0.978) |
amp 12q15 | 222 (38%) | 357 |
0.00303 (0.0255) |
0.247 (0.492) |
0.579 (0.779) |
0.0025 (0.0227) |
1e-05 (0.000221) |
2e-05 (0.000406) |
0.0727 (0.243) |
0.248 (0.492) |
0.00141 (0.0148) |
0.0707 (0.24) |
0.969 (1.00) |
0.102 (0.297) |
0.231 (0.476) |
0.27 (0.51) |
amp 19q12 | 322 (56%) | 257 |
0.124 (0.332) |
0.00621 (0.0444) |
0.029 (0.133) |
0.516 (0.729) |
1e-05 (0.000221) |
1e-05 (0.000221) |
0.0468 (0.186) |
0.213 (0.457) |
0.548 (0.756) |
0.376 (0.615) |
0.347 (0.586) |
0.0591 (0.215) |
1 (1.00) |
0.782 (0.908) |
del 6q27 | 380 (66%) | 199 |
0.321 (0.56) |
0.0619 (0.22) |
0.273 (0.511) |
0.103 (0.297) |
1e-05 (0.000221) |
3e-05 (0.000552) |
0.619 (0.806) |
0.558 (0.764) |
2e-05 (0.000406) |
0.00157 (0.0163) |
0.56 (0.765) |
0.025 (0.121) |
0.691 (0.839) |
0.432 (0.658) |
del 9q34 13 | 342 (59%) | 237 |
0.0164 (0.0887) |
0.0009 (0.00972) |
0.698 (0.843) |
0.408 (0.64) |
1e-05 (0.000221) |
0.0185 (0.097) |
0.676 (0.828) |
0.164 (0.389) |
0.0775 (0.254) |
0.0813 (0.263) |
0.0497 (0.194) |
0.102 (0.297) |
1 (1.00) |
0.79 (0.913) |
del 19q13 43 | 285 (49%) | 294 |
0.0165 (0.0887) |
0.0828 (0.266) |
0.079 (0.257) |
0.387 (0.623) |
0.00011 (0.00176) |
6e-05 (0.00103) |
0.161 (0.387) |
0.49 (0.71) |
0.563 (0.769) |
0.985 (1.00) |
0.514 (0.728) |
0.121 (0.33) |
0.0427 (0.173) |
0.0225 (0.112) |
del 22q13 32 | 503 (87%) | 76 |
0.206 (0.447) |
0.125 (0.332) |
0.0341 (0.147) |
0.286 (0.523) |
0.0166 (0.0887) |
0.157 (0.383) |
0.124 (0.332) |
0.0459 (0.183) |
0.171 (0.396) |
0.0133 (0.0796) |
0.0377 (0.159) |
0.577 (0.779) |
||
amp 4p16 3 | 160 (28%) | 419 |
1 (1.00) |
0.317 (0.56) |
0.0293 (0.133) |
0.481 (0.703) |
0.00033 (0.00421) |
0.0276 (0.128) |
0.271 (0.51) |
0.689 (0.839) |
0.687 (0.838) |
0.982 (1.00) |
0.629 (0.807) |
0.0179 (0.0948) |
0.652 (0.819) |
0.575 (0.778) |
amp 22q12 2 | 91 (16%) | 488 |
0.622 (0.806) |
0.154 (0.38) |
0.0706 (0.24) |
0.0343 (0.147) |
0.00747 (0.0512) |
0.00077 (0.0086) |
0.984 (1.00) |
0.0908 (0.276) |
0.06 (0.215) |
0.0595 (0.215) |
0.11 (0.306) |
0.0145 (0.0839) |
1 (1.00) |
0.0876 (0.271) |
del 9p24 3 | 261 (45%) | 318 |
0.00025 (0.00331) |
3e-05 (0.000552) |
0.618 (0.806) |
0.0131 (0.079) |
0.0621 (0.221) |
0.00011 (0.00176) |
0.324 (0.56) |
0.954 (1.00) |
0.0729 (0.243) |
0.0512 (0.196) |
0.0878 (0.271) |
0.126 (0.335) |
1 (1.00) |
0.512 (0.728) |
amp 1q21 3 | 367 (63%) | 212 |
0.269 (0.51) |
0.164 (0.389) |
0.641 (0.816) |
0.394 (0.625) |
1e-05 (0.000221) |
0.00013 (0.00193) |
0.0757 (0.249) |
0.0691 (0.238) |
0.662 (0.828) |
0.37 (0.612) |
0.845 (0.953) |
0.00598 (0.0431) |
0.652 (0.819) |
0.697 (0.843) |
amp 6p22 3 | 306 (53%) | 273 |
0.176 (0.406) |
0.0306 (0.138) |
0.276 (0.514) |
0.0732 (0.243) |
1e-05 (0.000221) |
0.0123 (0.0751) |
0.073 (0.243) |
0.0553 (0.205) |
0.867 (0.968) |
0.214 (0.457) |
0.375 (0.615) |
0.611 (0.803) |
1 (1.00) |
0.252 (0.496) |
amp 8p11 21 | 211 (36%) | 368 |
0.109 (0.306) |
0.353 (0.593) |
0.0994 (0.293) |
0.532 (0.743) |
1e-05 (0.000221) |
0.0154 (0.0865) |
0.0116 (0.0714) |
0.42 (0.649) |
0.278 (0.514) |
0.173 (0.4) |
0.769 (0.902) |
0.324 (0.56) |
0.231 (0.476) |
0.857 (0.96) |
amp 17q25 3 | 215 (37%) | 364 |
0.469 (0.692) |
0.0563 (0.207) |
0.981 (1.00) |
0.664 (0.828) |
0.00416 (0.0333) |
0.775 (0.903) |
0.0721 (0.243) |
0.13 (0.338) |
0.0127 (0.077) |
0.026 (0.124) |
0.325 (0.56) |
0.128 (0.336) |
1 (1.00) |
0.713 (0.853) |
amp 18q11 2 | 143 (25%) | 436 |
0.822 (0.935) |
0.783 (0.908) |
0.951 (1.00) |
0.22 (0.468) |
1e-05 (0.000221) |
0.00389 (0.0317) |
0.156 (0.383) |
0.419 (0.649) |
0.042 (0.173) |
0.0775 (0.254) |
0.15 (0.377) |
0.514 (0.728) |
0.381 (0.617) |
0.0946 (0.285) |
amp xp11 23 | 159 (27%) | 420 |
0.666 (0.828) |
0.867 (0.968) |
0.419 (0.649) |
0.63 (0.807) |
1e-05 (0.000221) |
0.00189 (0.019) |
0.717 (0.854) |
0.902 (0.986) |
0.447 (0.674) |
0.931 (1.00) |
0.277 (0.514) |
0.0313 (0.14) |
0.675 (0.828) |
0.631 (0.807) |
del 4q34 3 | 421 (73%) | 158 |
0.0522 (0.199) |
0.0006 (0.00686) |
0.0628 (0.222) |
0.0272 (0.127) |
0.183 (0.416) |
0.581 (0.779) |
0.667 (0.828) |
0.199 (0.441) |
0.0844 (0.269) |
0.0183 (0.0965) |
0.418 (0.649) |
0.529 (0.74) |
1 (1.00) |
0.556 (0.763) |
del 8p23 3 | 388 (67%) | 191 |
0.0442 (0.178) |
0.151 (0.378) |
0.576 (0.778) |
0.0104 (0.0663) |
1e-05 (0.000221) |
0.0502 (0.195) |
0.892 (0.983) |
0.451 (0.678) |
0.893 (0.983) |
0.912 (0.993) |
0.246 (0.492) |
0.246 (0.492) |
1 (1.00) |
|
del 8p21 2 | 406 (70%) | 173 |
0.0431 (0.174) |
0.0909 (0.276) |
0.181 (0.414) |
0.00581 (0.0425) |
1e-05 (0.000221) |
0.148 (0.376) |
0.876 (0.975) |
0.994 (1.00) |
0.457 (0.681) |
0.704 (0.847) |
0.581 (0.779) |
0.512 (0.728) |
1 (1.00) |
|
del 11p15 5 | 346 (60%) | 233 |
0.11 (0.306) |
0.97 (1.00) |
0.615 (0.804) |
0.0858 (0.271) |
1e-05 (0.000221) |
0.00776 (0.0521) |
0.946 (1.00) |
0.714 (0.853) |
0.7 (0.843) |
0.501 (0.722) |
0.106 (0.304) |
0.0096 (0.0624) |
0.204 (0.445) |
0.928 (1.00) |
del 16q22 1 | 461 (80%) | 118 |
0.497 (0.719) |
0.705 (0.847) |
0.0329 (0.144) |
0.448 (0.674) |
0.00081 (0.00895) |
0.644 (0.818) |
0.698 (0.843) |
0.144 (0.366) |
0.223 (0.47) |
0.287 (0.524) |
0.314 (0.557) |
0.0477 (0.189) |
1 (1.00) |
0.383 (0.618) |
del 17q11 2 | 472 (82%) | 107 |
0.921 (0.998) |
0.193 (0.433) |
0.735 (0.87) |
0.217 (0.462) |
0.00056 (0.00655) |
0.00249 (0.0227) |
0.768 (0.901) |
0.0357 (0.152) |
0.373 (0.615) |
0.441 (0.67) |
0.149 (0.377) |
0.165 (0.39) |
1 (1.00) |
0.337 (0.575) |
amp 5p15 33 | 309 (53%) | 270 |
1 (1.00) |
0.055 (0.205) |
0.628 (0.807) |
0.25 (0.494) |
1e-05 (0.000221) |
0.0994 (0.293) |
0.982 (1.00) |
0.238 (0.488) |
0.243 (0.492) |
0.39 (0.624) |
0.0244 (0.119) |
0.148 (0.376) |
0.231 (0.476) |
0.268 (0.51) |
amp 7q36 3 | 320 (55%) | 259 |
0.106 (0.305) |
0.18 (0.413) |
0.358 (0.601) |
0.989 (1.00) |
2e-05 (0.000406) |
0.453 (0.679) |
0.0315 (0.14) |
0.204 (0.445) |
0.843 (0.951) |
0.97 (1.00) |
0.214 (0.457) |
0.499 (0.721) |
0.198 (0.439) |
0.262 (0.508) |
amp 10p15 3 | 252 (44%) | 327 |
0.826 (0.938) |
0.0998 (0.293) |
0.0533 (0.2) |
0.166 (0.391) |
1e-05 (0.000221) |
0.00052 (0.00623) |
0.483 (0.705) |
0.502 (0.722) |
0.242 (0.491) |
0.123 (0.332) |
0.377 (0.615) |
0.0674 (0.233) |
1 (1.00) |
0.611 (0.803) |
amp 14q11 2 | 148 (26%) | 431 |
0.0164 (0.0887) |
0.0589 (0.215) |
0.29 (0.525) |
0.00663 (0.0467) |
0.0694 (0.238) |
0.195 (0.434) |
0.534 (0.744) |
0.468 (0.692) |
0.341 (0.581) |
0.408 (0.64) |
0.299 (0.536) |
0.821 (0.935) |
0.323 (0.56) |
0.277 (0.514) |
amp 14q32 33 | 156 (27%) | 423 |
0.438 (0.665) |
0.652 (0.819) |
0.197 (0.436) |
0.0165 (0.0887) |
0.00015 (0.00216) |
0.287 (0.524) |
1 (1.00) |
0.204 (0.445) |
0.167 (0.392) |
0.241 (0.491) |
0.376 (0.615) |
0.422 (0.65) |
0.0964 (0.289) |
0.138 (0.355) |
amp 19q13 2 | 245 (42%) | 334 |
0.944 (1.00) |
0.537 (0.745) |
0.663 (0.828) |
0.388 (0.623) |
1e-05 (0.000221) |
8e-05 (0.00133) |
0.446 (0.674) |
0.15 (0.377) |
0.381 (0.617) |
0.0876 (0.271) |
0.978 (1.00) |
0.552 (0.76) |
0.675 (0.828) |
0.61 (0.803) |
amp xq28 | 220 (38%) | 359 |
0.246 (0.492) |
0.847 (0.954) |
0.555 (0.763) |
0.124 (0.332) |
0.00039 (0.00485) |
0.176 (0.405) |
0.455 (0.68) |
0.444 (0.672) |
0.624 (0.806) |
0.938 (1.00) |
0.881 (0.976) |
0.805 (0.925) |
0.0427 (0.173) |
0.622 (0.806) |
del 1p36 11 | 269 (46%) | 310 |
0.738 (0.871) |
0.0673 (0.233) |
0.0299 (0.135) |
0.113 (0.312) |
6e-05 (0.00103) |
0.0876 (0.271) |
0.124 (0.332) |
0.392 (0.624) |
0.852 (0.957) |
0.416 (0.648) |
0.22 (0.468) |
0.17 (0.396) |
0.675 (0.828) |
0.977 (1.00) |
del 1q41 | 97 (17%) | 482 |
0.0878 (0.271) |
0.621 (0.806) |
0.299 (0.536) |
0.839 (0.95) |
1e-05 (0.000221) |
0.134 (0.348) |
0.486 (0.707) |
0.0193 (0.1) |
0.278 (0.514) |
0.246 (0.492) |
0.919 (0.997) |
0.97 (1.00) |
0.455 (0.68) |
|
del 4q22 1 | 394 (68%) | 185 |
0.0526 (0.199) |
0.0236 (0.116) |
1 (1.00) |
0.166 (0.391) |
0.0152 (0.0864) |
0.226 (0.473) |
0.193 (0.433) |
0.0598 (0.215) |
0.0706 (0.24) |
0.39 (0.624) |
0.302 (0.539) |
0.253 (0.497) |
0.675 (0.828) |
0.41 (0.642) |
del 5q12 1 | 355 (61%) | 224 |
0.883 (0.976) |
0.873 (0.973) |
0.58 (0.779) |
0.0555 (0.205) |
1e-05 (0.000221) |
0.00012 (0.00184) |
0.686 (0.838) |
0.865 (0.967) |
0.297 (0.536) |
0.0536 (0.2) |
0.162 (0.387) |
0.252 (0.496) |
1 (1.00) |
0.264 (0.508) |
del 10p15 3 | 120 (21%) | 459 |
0.18 (0.412) |
0.71 (0.851) |
0.0879 (0.271) |
0.319 (0.56) |
0.0966 (0.289) |
0.347 (0.586) |
0.289 (0.525) |
0.0402 (0.168) |
0.0142 (0.0839) |
0.0888 (0.273) |
0.254 (0.497) |
0.264 (0.508) |
0.594 (0.789) |
0.108 (0.305) |
del 16q23 1 | 452 (78%) | 127 |
0.109 (0.306) |
0.244 (0.492) |
0.103 (0.297) |
0.0614 (0.22) |
0.00012 (0.00184) |
0.535 (0.744) |
0.813 (0.932) |
0.221 (0.468) |
0.273 (0.512) |
0.169 (0.394) |
0.0575 (0.211) |
0.0488 (0.191) |
1 (1.00) |
0.9 (0.986) |
del 19p13 3 | 512 (88%) | 67 |
0.158 (0.385) |
0.0905 (0.276) |
0.84 (0.95) |
0.547 (0.755) |
0.0004 (0.00491) |
0.0169 (0.0898) |
0.624 (0.806) |
0.407 (0.64) |
0.336 (0.574) |
0.516 (0.729) |
0.48 (0.703) |
0.733 (0.868) |
1 (1.00) |
|
amp 1p34 3 | 292 (50%) | 287 |
0.43 (0.656) |
0.0819 (0.264) |
0.127 (0.336) |
0.0856 (0.271) |
1e-05 (0.000221) |
0.194 (0.433) |
0.112 (0.31) |
0.386 (0.621) |
0.557 (0.763) |
0.186 (0.419) |
0.0878 (0.271) |
0.164 (0.389) |
0.0743 (0.246) |
0.926 (1.00) |
amp 4q13 3 | 113 (20%) | 466 |
0.905 (0.988) |
0.465 (0.689) |
0.383 (0.618) |
0.987 (1.00) |
0.00021 (0.00286) |
0.524 (0.735) |
0.616 (0.804) |
0.545 (0.753) |
0.181 (0.413) |
0.487 (0.708) |
0.966 (1.00) |
0.691 (0.839) |
0.323 (0.56) |
0.695 (0.841) |
amp 15q26 3 | 163 (28%) | 416 |
0.0841 (0.269) |
0.426 (0.652) |
0.508 (0.728) |
0.426 (0.652) |
1e-05 (0.000221) |
0.806 (0.925) |
0.979 (1.00) |
0.182 (0.414) |
0.203 (0.445) |
0.543 (0.752) |
0.157 (0.383) |
0.0656 (0.229) |
0.675 (0.828) |
0.787 (0.911) |
del 2q22 1 | 137 (24%) | 442 |
0.107 (0.305) |
0.27 (0.51) |
0.569 (0.775) |
0.00357 (0.0293) |
0.0746 (0.246) |
0.663 (0.828) |
0.604 (0.798) |
0.721 (0.858) |
0.918 (0.997) |
0.3 (0.536) |
0.479 (0.703) |
0.6 (0.796) |
1 (1.00) |
0.263 (0.508) |
del 5q13 2 | 419 (72%) | 160 |
0.747 (0.88) |
0.621 (0.806) |
0.898 (0.986) |
0.26 (0.506) |
1e-05 (0.000221) |
0.105 (0.302) |
0.791 (0.913) |
0.831 (0.943) |
0.519 (0.731) |
0.0917 (0.277) |
0.155 (0.382) |
0.107 (0.305) |
1 (1.00) |
0.724 (0.86) |
del 7p22 1 | 253 (44%) | 326 |
0.394 (0.625) |
0.513 (0.728) |
0.772 (0.902) |
0.0651 (0.228) |
1e-05 (0.000221) |
0.627 (0.807) |
0.816 (0.935) |
0.602 (0.798) |
0.345 (0.586) |
0.128 (0.336) |
0.346 (0.586) |
0.905 (0.988) |
0.231 (0.476) |
0.782 (0.908) |
del 14q23 3 | 305 (53%) | 274 |
0.0651 (0.228) |
0.507 (0.728) |
0.652 (0.819) |
0.609 (0.803) |
1e-05 (0.000221) |
0.736 (0.87) |
0.226 (0.473) |
0.509 (0.728) |
0.858 (0.96) |
0.282 (0.518) |
0.901 (0.986) |
0.593 (0.789) |
0.666 (0.828) |
0.141 (0.364) |
del 16p13 3 | 313 (54%) | 266 |
0.604 (0.798) |
0.0717 (0.242) |
0.276 (0.514) |
0.0289 (0.133) |
0.108 (0.305) |
0.421 (0.649) |
0.839 (0.95) |
0.82 (0.935) |
0.369 (0.612) |
0.429 (0.656) |
0.225 (0.473) |
0.485 (0.706) |
0.675 (0.828) |
0.785 (0.91) |
del 18q23 | 381 (66%) | 198 |
0.884 (0.976) |
0.851 (0.957) |
0.37 (0.612) |
0.956 (1.00) |
0.00264 (0.0232) |
0.591 (0.789) |
0.478 (0.702) |
0.184 (0.417) |
0.152 (0.38) |
0.362 (0.607) |
0.661 (0.828) |
0.495 (0.717) |
0.646 (0.818) |
0.795 (0.916) |
del 21q22 3 | 227 (39%) | 352 |
0.367 (0.612) |
0.0403 (0.168) |
0.692 (0.839) |
0.205 (0.445) |
0.795 (0.916) |
0.263 (0.508) |
0.656 (0.823) |
0.715 (0.853) |
0.246 (0.492) |
0.126 (0.335) |
0.822 (0.935) |
0.729 (0.865) |
0.162 (0.387) |
0.928 (1.00) |
del xp21 1 | 355 (61%) | 224 |
0.402 (0.636) |
0.644 (0.818) |
0.0985 (0.293) |
0.8 (0.92) |
0.167 (0.392) |
0.0208 (0.105) |
0.462 (0.687) |
0.107 (0.305) |
0.884 (0.976) |
0.239 (0.489) |
0.976 (1.00) |
0.718 (0.854) |
0.594 (0.789) |
0.282 (0.518) |
amp 10q22 3 | 184 (32%) | 395 |
0.37 (0.612) |
0.268 (0.51) |
0.606 (0.8) |
0.948 (1.00) |
0.0782 (0.255) |
0.843 (0.951) |
0.773 (0.902) |
0.818 (0.935) |
0.342 (0.581) |
0.898 (0.986) |
0.228 (0.476) |
0.647 (0.818) |
0.67 (0.828) |
0.3 (0.536) |
del 2p25 3 | 120 (21%) | 459 |
0.88 (0.976) |
0.27 (0.51) |
0.423 (0.65) |
0.159 (0.385) |
0.405 (0.639) |
0.638 (0.813) |
0.26 (0.506) |
0.542 (0.751) |
0.0643 (0.227) |
0.236 (0.486) |
0.877 (0.975) |
0.95 (1.00) |
0.381 (0.617) |
0.426 (0.652) |
del 3q13 31 | 84 (15%) | 495 |
0.326 (0.56) |
0.226 (0.473) |
0.569 (0.775) |
0.629 (0.807) |
0.109 (0.306) |
0.0845 (0.269) |
0.247 (0.492) |
0.452 (0.679) |
0.411 (0.642) |
0.399 (0.632) |
0.521 (0.733) |
0.521 (0.733) |
1 (1.00) |
|
del 11q25 | 201 (35%) | 378 |
0.626 (0.807) |
0.652 (0.819) |
0.206 (0.447) |
0.0532 (0.2) |
0.271 (0.51) |
0.414 (0.646) |
0.324 (0.56) |
0.269 (0.51) |
0.931 (1.00) |
0.457 (0.681) |
0.707 (0.849) |
0.271 (0.51) |
1 (1.00) |
0.771 (0.902) |
del 17p12 | 491 (85%) | 88 |
0.142 (0.364) |
0.335 (0.573) |
0.593 (0.789) |
0.689 (0.839) |
0.711 (0.852) |
0.325 (0.56) |
0.907 (0.988) |
0.371 (0.613) |
0.153 (0.38) |
0.194 (0.433) |
0.51 (0.728) |
0.209 (0.45) |
1 (1.00) |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 1(1P34.3) MUTATED | 58 | 114 | 120 |
AMP PEAK 1(1P34.3) WILD-TYPE | 113 | 92 | 82 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 2(1Q21.3) MUTATED | 86 | 114 | 167 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 85 | 92 | 35 |
P value = 0.00013 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
AMP PEAK 2(1Q21.3) MUTATED | 128 | 92 | 141 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 44 | 83 | 80 |
P value = 0.00598 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
AMP PEAK 2(1Q21.3) MUTATED | 54 | 42 | 119 | 68 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 51 | 29 | 46 | 38 |
P value = 0.0236 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
AMP PEAK 3(1Q42.2) MUTATED | 133 | 106 | 66 |
AMP PEAK 3(1Q42.2) WILD-TYPE | 82 | 110 | 60 |
P value = 0.0273 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
AMP PEAK 3(1Q42.2) MUTATED | 174 | 74 | 57 |
AMP PEAK 3(1Q42.2) WILD-TYPE | 136 | 84 | 32 |
P value = 0.00755 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
AMP PEAK 3(1Q42.2) MUTATED | 45 | 30 | 36 | 43 | 13 | 44 | 21 | 22 | 37 | 13 |
AMP PEAK 3(1Q42.2) WILD-TYPE | 40 | 27 | 22 | 39 | 21 | 31 | 13 | 14 | 15 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 3(1Q42.2) MUTATED | 88 | 87 | 147 |
AMP PEAK 3(1Q42.2) WILD-TYPE | 83 | 119 | 55 |
P value = 7e-05 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
AMP PEAK 3(1Q42.2) MUTATED | 119 | 87 | 108 |
AMP PEAK 3(1Q42.2) WILD-TYPE | 53 | 88 | 113 |
P value = 0.00254 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
AMP PEAK 3(1Q42.2) MUTATED | 41 | 43 | 101 | 59 |
AMP PEAK 3(1Q42.2) WILD-TYPE | 64 | 28 | 64 | 47 |
P value = 0.0136 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
AMP PEAK 4(2P23.2) MUTATED | 123 | 67 | 51 |
AMP PEAK 4(2P23.2) WILD-TYPE | 187 | 91 | 38 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 4(2P23.2) MUTATED | 47 | 87 | 118 |
AMP PEAK 4(2P23.2) WILD-TYPE | 124 | 119 | 84 |
P value = 0.00445 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
AMP PEAK 4(2P23.2) MUTATED | 90 | 61 | 93 |
AMP PEAK 4(2P23.2) WILD-TYPE | 82 | 114 | 128 |
P value = 0.0321 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 67 | 91 |
AMP PEAK 4(2P23.2) MUTATED | 45 | 22 | 49 |
AMP PEAK 4(2P23.2) WILD-TYPE | 55 | 45 | 42 |
P value = 0.0199 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 116 | 36 |
AMP PEAK 4(2P23.2) MUTATED | 44 | 48 | 24 |
AMP PEAK 4(2P23.2) WILD-TYPE | 62 | 68 | 12 |
P value = 0.0338 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 164 | 232 |
AMP PEAK 5(2Q31.2) MUTATED | 73 | 61 | 117 |
AMP PEAK 5(2Q31.2) WILD-TYPE | 86 | 103 | 115 |
P value = 0.0296 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
AMP PEAK 5(2Q31.2) MUTATED | 30 | 20 | 32 | 42 | 14 | 36 | 18 | 15 | 31 | 13 |
AMP PEAK 5(2Q31.2) WILD-TYPE | 55 | 37 | 26 | 40 | 20 | 39 | 16 | 21 | 21 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 5(2Q31.2) MUTATED | 46 | 102 | 114 |
AMP PEAK 5(2Q31.2) WILD-TYPE | 125 | 104 | 88 |
P value = 0.00769 (Fisher's exact test), Q value = 0.052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
AMP PEAK 5(2Q31.2) MUTATED | 95 | 70 | 93 |
AMP PEAK 5(2Q31.2) WILD-TYPE | 77 | 105 | 128 |
P value = 0.048 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 196 | 82 |
AMP PEAK 5(2Q31.2) MUTATED | 52 | 100 | 29 |
AMP PEAK 5(2Q31.2) WILD-TYPE | 68 | 96 | 53 |
P value = 0.00897 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
AMP PEAK 6(3Q26.2) MUTATED | 167 | 191 | 108 |
AMP PEAK 6(3Q26.2) WILD-TYPE | 48 | 25 | 18 |
P value = 0.0266 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
AMP PEAK 6(3Q26.2) MUTATED | 257 | 141 | 68 |
AMP PEAK 6(3Q26.2) WILD-TYPE | 53 | 17 | 21 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 6(3Q26.2) MUTATED | 113 | 181 | 191 |
AMP PEAK 6(3Q26.2) WILD-TYPE | 58 | 25 | 11 |
P value = 0.0341 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
AMP PEAK 6(3Q26.2) MUTATED | 151 | 136 | 188 |
AMP PEAK 6(3Q26.2) WILD-TYPE | 21 | 39 | 33 |
P value = 0.00706 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 67 | 91 |
AMP PEAK 6(3Q26.2) MUTATED | 92 | 58 | 69 |
AMP PEAK 6(3Q26.2) WILD-TYPE | 8 | 9 | 22 |
P value = 0.0113 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 116 | 36 |
AMP PEAK 6(3Q26.2) MUTATED | 98 | 91 | 30 |
AMP PEAK 6(3Q26.2) WILD-TYPE | 8 | 25 | 6 |
P value = 0.0293 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 164 | 232 |
AMP PEAK 7(4P16.3) MUTATED | 41 | 35 | 77 |
AMP PEAK 7(4P16.3) WILD-TYPE | 118 | 129 | 155 |
P value = 0.00033 (Fisher's exact test), Q value = 0.0042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 7(4P16.3) MUTATED | 32 | 76 | 52 |
AMP PEAK 7(4P16.3) WILD-TYPE | 139 | 130 | 150 |
P value = 0.0276 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
AMP PEAK 7(4P16.3) MUTATED | 55 | 54 | 47 |
AMP PEAK 7(4P16.3) WILD-TYPE | 117 | 121 | 174 |
P value = 0.0179 (Fisher's exact test), Q value = 0.095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
AMP PEAK 7(4P16.3) MUTATED | 22 | 24 | 57 | 22 |
AMP PEAK 7(4P16.3) WILD-TYPE | 83 | 47 | 108 | 84 |
P value = 0.00021 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 8(4Q13.3) MUTATED | 17 | 54 | 42 |
AMP PEAK 8(4Q13.3) WILD-TYPE | 154 | 152 | 160 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 9(5P15.33) MUTATED | 60 | 123 | 126 |
AMP PEAK 9(5P15.33) WILD-TYPE | 111 | 83 | 76 |
P value = 0.0244 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 182 | 144 |
AMP PEAK 9(5P15.33) MUTATED | 61 | 115 | 72 |
AMP PEAK 9(5P15.33) WILD-TYPE | 60 | 67 | 72 |
P value = 0.0306 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
AMP PEAK 10(6P22.3) MUTATED | 167 | 71 | 55 |
AMP PEAK 10(6P22.3) WILD-TYPE | 143 | 87 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 10(6P22.3) MUTATED | 59 | 124 | 123 |
AMP PEAK 10(6P22.3) WILD-TYPE | 112 | 82 | 79 |
P value = 0.0123 (Fisher's exact test), Q value = 0.075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
AMP PEAK 10(6P22.3) MUTATED | 104 | 78 | 117 |
AMP PEAK 10(6P22.3) WILD-TYPE | 68 | 97 | 104 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 11(7Q36.3) MUTATED | 69 | 124 | 127 |
AMP PEAK 11(7Q36.3) WILD-TYPE | 102 | 82 | 75 |
P value = 0.0315 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 196 | 82 |
AMP PEAK 11(7Q36.3) MUTATED | 56 | 117 | 38 |
AMP PEAK 11(7Q36.3) WILD-TYPE | 64 | 79 | 44 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 12(8P11.21) MUTATED | 42 | 70 | 99 |
AMP PEAK 12(8P11.21) WILD-TYPE | 129 | 136 | 103 |
P value = 0.0154 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
AMP PEAK 12(8P11.21) MUTATED | 78 | 57 | 72 |
AMP PEAK 12(8P11.21) WILD-TYPE | 94 | 118 | 149 |
P value = 0.0116 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 196 | 82 |
AMP PEAK 12(8P11.21) MUTATED | 30 | 81 | 31 |
AMP PEAK 12(8P11.21) WILD-TYPE | 90 | 115 | 51 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
AMP PEAK 13(8Q24.21) MUTATED | 144 | 188 | 110 |
AMP PEAK 13(8Q24.21) WILD-TYPE | 71 | 28 | 16 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
AMP PEAK 13(8Q24.21) MUTATED | 245 | 144 | 53 |
AMP PEAK 13(8Q24.21) WILD-TYPE | 65 | 14 | 36 |
P value = 0.00241 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
AMP PEAK 13(8Q24.21) MUTATED | 71 | 46 | 43 | 67 | 31 | 64 | 24 | 27 | 30 | 38 |
AMP PEAK 13(8Q24.21) WILD-TYPE | 14 | 11 | 15 | 15 | 3 | 11 | 10 | 9 | 22 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 13(8Q24.21) MUTATED | 113 | 200 | 148 |
AMP PEAK 13(8Q24.21) WILD-TYPE | 58 | 6 | 54 |
P value = 0.0044 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
AMP PEAK 13(8Q24.21) MUTATED | 124 | 137 | 189 |
AMP PEAK 13(8Q24.21) WILD-TYPE | 48 | 38 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 67 | 91 |
AMP PEAK 13(8Q24.21) MUTATED | 90 | 61 | 56 |
AMP PEAK 13(8Q24.21) WILD-TYPE | 10 | 6 | 35 |
P value = 0.00031 (Fisher's exact test), Q value = 0.004
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 116 | 36 |
AMP PEAK 13(8Q24.21) MUTATED | 95 | 91 | 21 |
AMP PEAK 13(8Q24.21) WILD-TYPE | 11 | 25 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 14(10P15.3) MUTATED | 45 | 81 | 126 |
AMP PEAK 14(10P15.3) WILD-TYPE | 126 | 125 | 76 |
P value = 0.00052 (Fisher's exact test), Q value = 0.0062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
AMP PEAK 14(10P15.3) MUTATED | 95 | 63 | 87 |
AMP PEAK 14(10P15.3) WILD-TYPE | 77 | 112 | 134 |
P value = 0.00536 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
AMP PEAK 16(11Q14.1) MUTATED | 81 | 114 | 52 |
AMP PEAK 16(11Q14.1) WILD-TYPE | 134 | 102 | 74 |
P value = 0.00402 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
AMP PEAK 16(11Q14.1) MUTATED | 154 | 66 | 27 |
AMP PEAK 16(11Q14.1) WILD-TYPE | 156 | 92 | 62 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 16(11Q14.1) MUTATED | 54 | 117 | 86 |
AMP PEAK 16(11Q14.1) WILD-TYPE | 117 | 89 | 116 |
P value = 0.0022 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
AMP PEAK 16(11Q14.1) MUTATED | 82 | 59 | 111 |
AMP PEAK 16(11Q14.1) WILD-TYPE | 90 | 116 | 110 |
P value = 0.0048 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 67 | 91 |
AMP PEAK 16(11Q14.1) MUTATED | 59 | 33 | 32 |
AMP PEAK 16(11Q14.1) WILD-TYPE | 41 | 34 | 59 |
P value = 0.0265 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 116 | 36 |
AMP PEAK 16(11Q14.1) MUTATED | 56 | 58 | 10 |
AMP PEAK 16(11Q14.1) WILD-TYPE | 50 | 58 | 26 |
P value = 0.0427 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 12 | 10 |
AMP PEAK 16(11Q14.1) MUTATED | 8 | 2 |
AMP PEAK 16(11Q14.1) WILD-TYPE | 4 | 8 |
P value = 0.0237 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
AMP PEAK 17(12P13.33) MUTATED | 137 | 114 | 64 |
AMP PEAK 17(12P13.33) WILD-TYPE | 78 | 102 | 62 |
P value = 0.00312 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
AMP PEAK 17(12P13.33) MUTATED | 175 | 77 | 63 |
AMP PEAK 17(12P13.33) WILD-TYPE | 135 | 81 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 17(12P13.33) MUTATED | 71 | 111 | 148 |
AMP PEAK 17(12P13.33) WILD-TYPE | 100 | 95 | 54 |
P value = 0.00015 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
AMP PEAK 17(12P13.33) MUTATED | 119 | 96 | 108 |
AMP PEAK 17(12P13.33) WILD-TYPE | 53 | 79 | 113 |
P value = 0.0153 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 67 | 91 |
AMP PEAK 17(12P13.33) MUTATED | 50 | 31 | 61 |
AMP PEAK 17(12P13.33) WILD-TYPE | 50 | 36 | 30 |
P value = 0.0321 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 116 | 36 |
AMP PEAK 17(12P13.33) MUTATED | 48 | 71 | 23 |
AMP PEAK 17(12P13.33) WILD-TYPE | 58 | 45 | 13 |
P value = 0.00796 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
AMP PEAK 17(12P13.33) MUTATED | 45 | 45 | 103 | 57 |
AMP PEAK 17(12P13.33) WILD-TYPE | 60 | 26 | 62 | 49 |
P value = 0.0399 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
AMP PEAK 18(12P12.1) MUTATED | 41 | 27 | 31 | 47 | 20 | 37 | 21 | 17 | 39 | 17 |
AMP PEAK 18(12P12.1) WILD-TYPE | 44 | 30 | 27 | 35 | 14 | 38 | 13 | 19 | 13 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 18(12P12.1) MUTATED | 66 | 98 | 149 |
AMP PEAK 18(12P12.1) WILD-TYPE | 105 | 108 | 53 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
AMP PEAK 18(12P12.1) MUTATED | 117 | 87 | 102 |
AMP PEAK 18(12P12.1) WILD-TYPE | 55 | 88 | 119 |
P value = 0.0116 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 67 | 91 |
AMP PEAK 18(12P12.1) MUTATED | 50 | 28 | 59 |
AMP PEAK 18(12P12.1) WILD-TYPE | 50 | 39 | 32 |
P value = 0.00519 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
AMP PEAK 18(12P12.1) MUTATED | 43 | 44 | 100 | 52 |
AMP PEAK 18(12P12.1) WILD-TYPE | 62 | 27 | 65 | 54 |
P value = 0.0421 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 2 | 2 | 6 | 4 | 2 |
AMP PEAK 18(12P12.1) MUTATED | 4 | 0 | 0 | 2 | 4 | 2 |
AMP PEAK 18(12P12.1) WILD-TYPE | 2 | 2 | 2 | 4 | 0 | 0 |
P value = 0.00303 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
AMP PEAK 19(12Q15) MUTATED | 99 | 65 | 47 |
AMP PEAK 19(12Q15) WILD-TYPE | 116 | 151 | 79 |
P value = 0.0025 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
AMP PEAK 19(12Q15) MUTATED | 31 | 13 | 23 | 29 | 15 | 24 | 15 | 16 | 33 | 11 |
AMP PEAK 19(12Q15) WILD-TYPE | 54 | 44 | 35 | 53 | 19 | 51 | 19 | 20 | 19 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 19(12Q15) MUTATED | 52 | 58 | 112 |
AMP PEAK 19(12Q15) WILD-TYPE | 119 | 148 | 90 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
AMP PEAK 19(12Q15) MUTATED | 90 | 62 | 65 |
AMP PEAK 19(12Q15) WILD-TYPE | 82 | 113 | 156 |
P value = 0.00141 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 67 | 91 |
AMP PEAK 19(12Q15) MUTATED | 35 | 20 | 51 |
AMP PEAK 19(12Q15) WILD-TYPE | 65 | 47 | 40 |
P value = 0.0164 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
AMP PEAK 20(14Q11.2) MUTATED | 70 | 48 | 26 |
AMP PEAK 20(14Q11.2) WILD-TYPE | 145 | 168 | 100 |
P value = 0.00663 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
AMP PEAK 20(14Q11.2) MUTATED | 26 | 16 | 15 | 21 | 10 | 8 | 10 | 11 | 21 | 5 |
AMP PEAK 20(14Q11.2) WILD-TYPE | 59 | 41 | 43 | 61 | 24 | 67 | 24 | 25 | 31 | 37 |
P value = 0.0165 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
AMP PEAK 21(14Q32.33) MUTATED | 25 | 12 | 12 | 26 | 11 | 11 | 5 | 15 | 17 | 16 |
AMP PEAK 21(14Q32.33) WILD-TYPE | 60 | 45 | 46 | 56 | 23 | 64 | 29 | 21 | 35 | 26 |
P value = 0.00015 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 21(14Q32.33) MUTATED | 41 | 77 | 38 |
AMP PEAK 21(14Q32.33) WILD-TYPE | 130 | 129 | 164 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 22(15Q26.3) MUTATED | 34 | 90 | 39 |
AMP PEAK 22(15Q26.3) WILD-TYPE | 137 | 116 | 163 |
P value = 0.00416 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 23(17Q25.3) MUTATED | 53 | 95 | 67 |
AMP PEAK 23(17Q25.3) WILD-TYPE | 118 | 111 | 135 |
P value = 0.0127 (Fisher's exact test), Q value = 0.077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 67 | 91 |
AMP PEAK 23(17Q25.3) MUTATED | 48 | 28 | 25 |
AMP PEAK 23(17Q25.3) WILD-TYPE | 52 | 39 | 66 |
P value = 0.026 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 116 | 36 |
AMP PEAK 23(17Q25.3) MUTATED | 52 | 37 | 12 |
AMP PEAK 23(17Q25.3) WILD-TYPE | 54 | 79 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 24(18Q11.2) MUTATED | 25 | 44 | 74 |
AMP PEAK 24(18Q11.2) WILD-TYPE | 146 | 162 | 128 |
P value = 0.00389 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
AMP PEAK 24(18Q11.2) MUTATED | 56 | 30 | 56 |
AMP PEAK 24(18Q11.2) WILD-TYPE | 116 | 145 | 165 |
P value = 0.042 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 67 | 91 |
AMP PEAK 24(18Q11.2) MUTATED | 32 | 10 | 22 |
AMP PEAK 24(18Q11.2) WILD-TYPE | 68 | 57 | 69 |
P value = 0.00035 (Fisher's exact test), Q value = 0.0044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
AMP PEAK 25(19P13.12) MUTATED | 136 | 115 | 51 |
AMP PEAK 25(19P13.12) WILD-TYPE | 79 | 101 | 75 |
P value = 0.00016 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
AMP PEAK 25(19P13.12) MUTATED | 186 | 64 | 52 |
AMP PEAK 25(19P13.12) WILD-TYPE | 124 | 94 | 37 |
P value = 0.0383 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 164 | 232 |
AMP PEAK 25(19P13.12) MUTATED | 85 | 77 | 139 |
AMP PEAK 25(19P13.12) WILD-TYPE | 74 | 87 | 93 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 25(19P13.12) MUTATED | 72 | 92 | 151 |
AMP PEAK 25(19P13.12) WILD-TYPE | 99 | 114 | 51 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
AMP PEAK 25(19P13.12) MUTATED | 118 | 73 | 116 |
AMP PEAK 25(19P13.12) WILD-TYPE | 54 | 102 | 105 |
P value = 0.00029 (Fisher's exact test), Q value = 0.0038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 196 | 82 |
AMP PEAK 25(19P13.12) MUTATED | 59 | 125 | 32 |
AMP PEAK 25(19P13.12) WILD-TYPE | 61 | 71 | 50 |
P value = 0.00013 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 96 | 128 | 58 |
AMP PEAK 25(19P13.12) MUTATED | 44 | 55 | 86 | 31 |
AMP PEAK 25(19P13.12) WILD-TYPE | 72 | 41 | 42 | 27 |
P value = 0.00621 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
AMP PEAK 26(19Q12) MUTATED | 186 | 72 | 55 |
AMP PEAK 26(19Q12) WILD-TYPE | 124 | 86 | 34 |
P value = 0.029 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 164 | 232 |
AMP PEAK 26(19Q12) MUTATED | 92 | 78 | 141 |
AMP PEAK 26(19Q12) WILD-TYPE | 67 | 86 | 91 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 26(19Q12) MUTATED | 67 | 83 | 172 |
AMP PEAK 26(19Q12) WILD-TYPE | 104 | 123 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
AMP PEAK 26(19Q12) MUTATED | 128 | 70 | 121 |
AMP PEAK 26(19Q12) WILD-TYPE | 44 | 105 | 100 |
P value = 0.0468 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 196 | 82 |
AMP PEAK 26(19Q12) MUTATED | 57 | 119 | 41 |
AMP PEAK 26(19Q12) WILD-TYPE | 63 | 77 | 41 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 27(19Q13.2) MUTATED | 51 | 71 | 123 |
AMP PEAK 27(19Q13.2) WILD-TYPE | 120 | 135 | 79 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
AMP PEAK 27(19Q13.2) MUTATED | 94 | 56 | 91 |
AMP PEAK 27(19Q13.2) WILD-TYPE | 78 | 119 | 130 |
P value = 0.00539 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
AMP PEAK 28(20P13) MUTATED | 161 | 79 | 62 |
AMP PEAK 28(20P13) WILD-TYPE | 149 | 79 | 27 |
P value = 0.0328 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
AMP PEAK 28(20P13) MUTATED | 41 | 28 | 36 | 44 | 19 | 44 | 23 | 19 | 34 | 13 |
AMP PEAK 28(20P13) WILD-TYPE | 44 | 29 | 22 | 38 | 15 | 31 | 11 | 17 | 18 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 28(20P13) MUTATED | 69 | 97 | 151 |
AMP PEAK 28(20P13) WILD-TYPE | 102 | 109 | 51 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
AMP PEAK 28(20P13) MUTATED | 123 | 81 | 103 |
AMP PEAK 28(20P13) WILD-TYPE | 49 | 94 | 118 |
P value = 0.0162 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 67 | 91 |
AMP PEAK 28(20P13) MUTATED | 50 | 30 | 60 |
AMP PEAK 28(20P13) WILD-TYPE | 50 | 37 | 31 |
P value = 0.00063 (Fisher's exact test), Q value = 0.0071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
AMP PEAK 28(20P13) MUTATED | 44 | 44 | 106 | 50 |
AMP PEAK 28(20P13) WILD-TYPE | 61 | 27 | 59 | 56 |
P value = 0.00231 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
AMP PEAK 29(20Q11.21) MUTATED | 144 | 110 | 78 |
AMP PEAK 29(20Q11.21) WILD-TYPE | 71 | 106 | 48 |
P value = 0.00302 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
AMP PEAK 29(20Q11.21) MUTATED | 178 | 87 | 67 |
AMP PEAK 29(20Q11.21) WILD-TYPE | 132 | 71 | 22 |
P value = 0.00298 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
AMP PEAK 29(20Q11.21) MUTATED | 45 | 33 | 36 | 44 | 20 | 45 | 29 | 22 | 40 | 18 |
AMP PEAK 29(20Q11.21) WILD-TYPE | 40 | 24 | 22 | 38 | 14 | 30 | 5 | 14 | 12 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 29(20Q11.21) MUTATED | 79 | 95 | 174 |
AMP PEAK 29(20Q11.21) WILD-TYPE | 92 | 111 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
AMP PEAK 29(20Q11.21) MUTATED | 140 | 91 | 109 |
AMP PEAK 29(20Q11.21) WILD-TYPE | 32 | 84 | 112 |
P value = 0.0198 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 96 | 128 | 58 |
AMP PEAK 29(20Q11.21) MUTATED | 74 | 53 | 84 | 25 |
AMP PEAK 29(20Q11.21) WILD-TYPE | 42 | 43 | 44 | 33 |
P value = 0.00025 (Fisher's exact test), Q value = 0.0033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 67 | 91 |
AMP PEAK 29(20Q11.21) MUTATED | 63 | 28 | 67 |
AMP PEAK 29(20Q11.21) WILD-TYPE | 37 | 39 | 24 |
P value = 0.0486 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 116 | 36 |
AMP PEAK 29(20Q11.21) MUTATED | 66 | 64 | 28 |
AMP PEAK 29(20Q11.21) WILD-TYPE | 40 | 52 | 8 |
P value = 0.00057 (Fisher's exact test), Q value = 0.0066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
AMP PEAK 29(20Q11.21) MUTATED | 52 | 46 | 119 | 57 |
AMP PEAK 29(20Q11.21) WILD-TYPE | 53 | 25 | 46 | 49 |
P value = 0.0106 (Fisher's exact test), Q value = 0.067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
AMP PEAK 30(20Q13.33) MUTATED | 164 | 136 | 86 |
AMP PEAK 30(20Q13.33) WILD-TYPE | 51 | 80 | 40 |
P value = 0.00088 (Fisher's exact test), Q value = 0.0096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
AMP PEAK 30(20Q13.33) MUTATED | 207 | 103 | 76 |
AMP PEAK 30(20Q13.33) WILD-TYPE | 103 | 55 | 13 |
P value = 0.00136 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
AMP PEAK 30(20Q13.33) MUTATED | 49 | 35 | 41 | 52 | 29 | 54 | 29 | 26 | 45 | 25 |
AMP PEAK 30(20Q13.33) WILD-TYPE | 36 | 22 | 17 | 30 | 5 | 21 | 5 | 10 | 7 | 17 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 30(20Q13.33) MUTATED | 87 | 132 | 183 |
AMP PEAK 30(20Q13.33) WILD-TYPE | 84 | 74 | 19 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
AMP PEAK 30(20Q13.33) MUTATED | 144 | 109 | 140 |
AMP PEAK 30(20Q13.33) WILD-TYPE | 28 | 66 | 81 |
P value = 0.00816 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 67 | 91 |
AMP PEAK 30(20Q13.33) MUTATED | 67 | 40 | 74 |
AMP PEAK 30(20Q13.33) WILD-TYPE | 33 | 27 | 17 |
P value = 0.00521 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 116 | 36 |
AMP PEAK 30(20Q13.33) MUTATED | 72 | 76 | 33 |
AMP PEAK 30(20Q13.33) WILD-TYPE | 34 | 40 | 3 |
P value = 0.0143 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 2 | 2 | 6 | 4 | 2 |
AMP PEAK 30(20Q13.33) MUTATED | 6 | 2 | 0 | 3 | 4 | 2 |
AMP PEAK 30(20Q13.33) WILD-TYPE | 0 | 0 | 2 | 3 | 0 | 0 |
P value = 0.0343 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
AMP PEAK 31(22Q12.2) MUTATED | 11 | 7 | 15 | 16 | 4 | 16 | 5 | 8 | 3 | 2 |
AMP PEAK 31(22Q12.2) WILD-TYPE | 74 | 50 | 43 | 66 | 30 | 59 | 29 | 28 | 49 | 40 |
P value = 0.00747 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 31(22Q12.2) MUTATED | 15 | 40 | 36 |
AMP PEAK 31(22Q12.2) WILD-TYPE | 156 | 166 | 166 |
P value = 0.00077 (Fisher's exact test), Q value = 0.0086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
AMP PEAK 31(22Q12.2) MUTATED | 27 | 14 | 48 |
AMP PEAK 31(22Q12.2) WILD-TYPE | 145 | 161 | 173 |
P value = 0.0145 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
AMP PEAK 31(22Q12.2) MUTATED | 15 | 8 | 38 | 10 |
AMP PEAK 31(22Q12.2) WILD-TYPE | 90 | 63 | 127 | 96 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 32(XP11.23) MUTATED | 25 | 55 | 79 |
AMP PEAK 32(XP11.23) WILD-TYPE | 146 | 151 | 123 |
P value = 0.00189 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
AMP PEAK 32(XP11.23) MUTATED | 64 | 37 | 53 |
AMP PEAK 32(XP11.23) WILD-TYPE | 108 | 138 | 168 |
P value = 0.0313 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
AMP PEAK 32(XP11.23) MUTATED | 23 | 27 | 53 | 23 |
AMP PEAK 32(XP11.23) WILD-TYPE | 82 | 44 | 112 | 83 |
P value = 0.00039 (Fisher's exact test), Q value = 0.0048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
AMP PEAK 33(XQ28) MUTATED | 46 | 96 | 78 |
AMP PEAK 33(XQ28) WILD-TYPE | 125 | 110 | 124 |
P value = 0.0427 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 12 | 10 |
AMP PEAK 33(XQ28) MUTATED | 8 | 2 |
AMP PEAK 33(XQ28) WILD-TYPE | 4 | 8 |
P value = 0.0299 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 164 | 232 |
DEL PEAK 1(1P36.11) MUTATED | 74 | 92 | 99 |
DEL PEAK 1(1P36.11) WILD-TYPE | 85 | 72 | 133 |
P value = 6e-05 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 1(1P36.11) MUTATED | 87 | 113 | 69 |
DEL PEAK 1(1P36.11) WILD-TYPE | 84 | 93 | 133 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 2(1Q41) MUTATED | 14 | 60 | 23 |
DEL PEAK 2(1Q41) WILD-TYPE | 157 | 146 | 179 |
P value = 0.0193 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 96 | 128 | 58 |
DEL PEAK 2(1Q41) MUTATED | 14 | 11 | 17 | 17 |
DEL PEAK 2(1Q41) WILD-TYPE | 102 | 85 | 111 | 41 |
P value = 0.00357 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
DEL PEAK 4(2Q22.1) MUTATED | 22 | 8 | 8 | 20 | 14 | 18 | 4 | 17 | 12 | 10 |
DEL PEAK 4(2Q22.1) WILD-TYPE | 63 | 49 | 50 | 62 | 20 | 57 | 30 | 19 | 40 | 32 |
P value = 0.0165 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
DEL PEAK 5(2Q37.3) MUTATED | 51 | 78 | 41 |
DEL PEAK 5(2Q37.3) WILD-TYPE | 164 | 138 | 85 |
P value = 0.0273 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
DEL PEAK 5(2Q37.3) MUTATED | 23 | 12 | 16 | 31 | 9 | 24 | 6 | 20 | 14 | 15 |
DEL PEAK 5(2Q37.3) WILD-TYPE | 62 | 45 | 42 | 51 | 25 | 51 | 28 | 16 | 38 | 27 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 5(2Q37.3) MUTATED | 35 | 86 | 54 |
DEL PEAK 5(2Q37.3) WILD-TYPE | 136 | 120 | 148 |
P value = 0.0151 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 67 | 91 |
DEL PEAK 5(2Q37.3) MUTATED | 46 | 21 | 24 |
DEL PEAK 5(2Q37.3) WILD-TYPE | 54 | 46 | 67 |
P value = 0.0026 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 116 | 36 |
DEL PEAK 5(2Q37.3) MUTATED | 50 | 29 | 12 |
DEL PEAK 5(2Q37.3) WILD-TYPE | 56 | 87 | 24 |
P value = 0.0216 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 182 | 144 |
DEL PEAK 5(2Q37.3) MUTATED | 42 | 66 | 33 |
DEL PEAK 5(2Q37.3) WILD-TYPE | 79 | 116 | 111 |
P value = 0.0198 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
DEL PEAK 5(2Q37.3) MUTATED | 45 | 19 | 52 | 25 |
DEL PEAK 5(2Q37.3) WILD-TYPE | 60 | 52 | 113 | 81 |
P value = 0.00049 (Fisher's exact test), Q value = 0.0059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
DEL PEAK 6(3P26.2) MUTATED | 101 | 54 | 49 |
DEL PEAK 6(3P26.2) WILD-TYPE | 209 | 104 | 40 |
P value = 0.00589 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 164 | 232 |
DEL PEAK 6(3P26.2) MUTATED | 54 | 47 | 102 |
DEL PEAK 6(3P26.2) WILD-TYPE | 105 | 117 | 130 |
P value = 0.0049 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
DEL PEAK 6(3P26.2) MUTATED | 29 | 20 | 12 | 34 | 13 | 26 | 17 | 16 | 28 | 8 |
DEL PEAK 6(3P26.2) WILD-TYPE | 56 | 37 | 46 | 48 | 21 | 49 | 17 | 20 | 24 | 34 |
P value = 0.00012 (Fisher's exact test), Q value = 0.0018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 6(3P26.2) MUTATED | 47 | 66 | 96 |
DEL PEAK 6(3P26.2) WILD-TYPE | 124 | 140 | 106 |
P value = 0.00054 (Fisher's exact test), Q value = 0.0064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
DEL PEAK 6(3P26.2) MUTATED | 83 | 51 | 74 |
DEL PEAK 6(3P26.2) WILD-TYPE | 89 | 124 | 147 |
P value = 0.00331 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 67 | 91 |
DEL PEAK 6(3P26.2) MUTATED | 40 | 15 | 44 |
DEL PEAK 6(3P26.2) WILD-TYPE | 60 | 52 | 47 |
P value = 0.00928 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 116 | 36 |
DEL PEAK 6(3P26.2) MUTATED | 45 | 34 | 20 |
DEL PEAK 6(3P26.2) WILD-TYPE | 61 | 82 | 16 |
P value = 0.0236 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
DEL PEAK 8(4Q22.1) MUTATED | 212 | 96 | 69 |
DEL PEAK 8(4Q22.1) WILD-TYPE | 98 | 62 | 20 |
P value = 0.0152 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 8(4Q22.1) MUTATED | 114 | 128 | 152 |
DEL PEAK 8(4Q22.1) WILD-TYPE | 57 | 78 | 50 |
P value = 6e-04 (Fisher's exact test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
DEL PEAK 9(4Q34.3) MUTATED | 226 | 102 | 77 |
DEL PEAK 9(4Q34.3) WILD-TYPE | 84 | 56 | 12 |
P value = 0.0272 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
DEL PEAK 9(4Q34.3) MUTATED | 66 | 42 | 41 | 65 | 22 | 49 | 29 | 24 | 43 | 23 |
DEL PEAK 9(4Q34.3) WILD-TYPE | 19 | 15 | 17 | 17 | 12 | 26 | 5 | 12 | 9 | 19 |
P value = 0.0183 (Fisher's exact test), Q value = 0.097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 116 | 36 |
DEL PEAK 9(4Q34.3) MUTATED | 69 | 84 | 32 |
DEL PEAK 9(4Q34.3) WILD-TYPE | 37 | 32 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 10(5Q12.1) MUTATED | 73 | 145 | 137 |
DEL PEAK 10(5Q12.1) WILD-TYPE | 98 | 61 | 65 |
P value = 0.00012 (Fisher's exact test), Q value = 0.0018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
DEL PEAK 10(5Q12.1) MUTATED | 117 | 85 | 146 |
DEL PEAK 10(5Q12.1) WILD-TYPE | 55 | 90 | 75 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 11(5Q13.2) MUTATED | 92 | 180 | 147 |
DEL PEAK 11(5Q13.2) WILD-TYPE | 79 | 26 | 55 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 12(6Q27) MUTATED | 121 | 162 | 97 |
DEL PEAK 12(6Q27) WILD-TYPE | 50 | 44 | 105 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
DEL PEAK 12(6Q27) MUTATED | 91 | 132 | 152 |
DEL PEAK 12(6Q27) WILD-TYPE | 81 | 43 | 69 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 67 | 91 |
DEL PEAK 12(6Q27) MUTATED | 66 | 52 | 38 |
DEL PEAK 12(6Q27) WILD-TYPE | 34 | 15 | 53 |
P value = 0.00157 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 116 | 36 |
DEL PEAK 12(6Q27) MUTATED | 71 | 73 | 12 |
DEL PEAK 12(6Q27) WILD-TYPE | 35 | 43 | 24 |
P value = 0.025 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
DEL PEAK 12(6Q27) MUTATED | 79 | 43 | 96 | 72 |
DEL PEAK 12(6Q27) WILD-TYPE | 26 | 28 | 69 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 13(7P22.1) MUTATED | 48 | 135 | 70 |
DEL PEAK 13(7P22.1) WILD-TYPE | 123 | 71 | 132 |
P value = 0.0442 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
DEL PEAK 14(8P23.3) MUTATED | 132 | 157 | 85 |
DEL PEAK 14(8P23.3) WILD-TYPE | 83 | 59 | 41 |
P value = 0.0104 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
DEL PEAK 14(8P23.3) MUTATED | 57 | 36 | 34 | 61 | 30 | 53 | 15 | 27 | 33 | 29 |
DEL PEAK 14(8P23.3) WILD-TYPE | 28 | 21 | 24 | 21 | 4 | 22 | 19 | 9 | 19 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 14(8P23.3) MUTATED | 78 | 162 | 148 |
DEL PEAK 14(8P23.3) WILD-TYPE | 93 | 44 | 54 |
P value = 0.0431 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
DEL PEAK 15(8P21.2) MUTATED | 138 | 160 | 94 |
DEL PEAK 15(8P21.2) WILD-TYPE | 77 | 56 | 32 |
P value = 0.00581 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
DEL PEAK 15(8P21.2) MUTATED | 66 | 35 | 39 | 56 | 30 | 51 | 16 | 30 | 36 | 33 |
DEL PEAK 15(8P21.2) WILD-TYPE | 19 | 22 | 19 | 26 | 4 | 24 | 18 | 6 | 16 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 15(8P21.2) MUTATED | 88 | 166 | 152 |
DEL PEAK 15(8P21.2) WILD-TYPE | 83 | 40 | 50 |
P value = 0.00025 (Fisher's exact test), Q value = 0.0033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
DEL PEAK 16(9P24.3) MUTATED | 109 | 73 | 66 |
DEL PEAK 16(9P24.3) WILD-TYPE | 106 | 143 | 60 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
DEL PEAK 16(9P24.3) MUTATED | 120 | 69 | 59 |
DEL PEAK 16(9P24.3) WILD-TYPE | 190 | 89 | 30 |
P value = 0.0131 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
DEL PEAK 16(9P24.3) MUTATED | 34 | 21 | 28 | 30 | 18 | 27 | 16 | 16 | 36 | 20 |
DEL PEAK 16(9P24.3) WILD-TYPE | 51 | 36 | 30 | 52 | 16 | 48 | 18 | 20 | 16 | 22 |
P value = 0.00011 (Fisher's exact test), Q value = 0.0018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
DEL PEAK 16(9P24.3) MUTATED | 92 | 90 | 75 |
DEL PEAK 16(9P24.3) WILD-TYPE | 80 | 85 | 146 |
P value = 0.0164 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
DEL PEAK 17(9Q34.13) MUTATED | 143 | 121 | 66 |
DEL PEAK 17(9Q34.13) WILD-TYPE | 72 | 95 | 60 |
P value = 9e-04 (Fisher's exact test), Q value = 0.0097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
DEL PEAK 17(9Q34.13) MUTATED | 185 | 79 | 66 |
DEL PEAK 17(9Q34.13) WILD-TYPE | 125 | 79 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 17(9Q34.13) MUTATED | 93 | 98 | 151 |
DEL PEAK 17(9Q34.13) WILD-TYPE | 78 | 108 | 51 |
P value = 0.0185 (Fisher's exact test), Q value = 0.097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
DEL PEAK 17(9Q34.13) MUTATED | 115 | 91 | 132 |
DEL PEAK 17(9Q34.13) WILD-TYPE | 57 | 84 | 89 |
P value = 0.0497 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 182 | 144 |
DEL PEAK 17(9Q34.13) MUTATED | 65 | 107 | 98 |
DEL PEAK 17(9Q34.13) WILD-TYPE | 56 | 75 | 46 |
P value = 0.0402 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 96 | 128 | 58 |
DEL PEAK 18(10P15.3) MUTATED | 23 | 21 | 20 | 20 |
DEL PEAK 18(10P15.3) WILD-TYPE | 93 | 75 | 108 | 38 |
P value = 0.0142 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 67 | 91 |
DEL PEAK 18(10P15.3) MUTATED | 12 | 20 | 20 |
DEL PEAK 18(10P15.3) WILD-TYPE | 88 | 47 | 71 |
P value = 0.00293 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
DEL PEAK 19(10Q24.2) MUTATED | 87 | 112 | 43 |
DEL PEAK 19(10Q24.2) WILD-TYPE | 128 | 104 | 83 |
P value = 0.00245 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
DEL PEAK 19(10Q24.2) MUTATED | 152 | 64 | 26 |
DEL PEAK 19(10Q24.2) WILD-TYPE | 158 | 94 | 63 |
P value = 0.00721 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 164 | 232 |
DEL PEAK 19(10Q24.2) MUTATED | 70 | 56 | 116 |
DEL PEAK 19(10Q24.2) WILD-TYPE | 89 | 108 | 116 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 19(10Q24.2) MUTATED | 53 | 111 | 87 |
DEL PEAK 19(10Q24.2) WILD-TYPE | 118 | 95 | 115 |
P value = 0.00229 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
DEL PEAK 19(10Q24.2) MUTATED | 79 | 58 | 111 |
DEL PEAK 19(10Q24.2) WILD-TYPE | 93 | 117 | 110 |
P value = 0.0158 (Fisher's exact test), Q value = 0.088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 196 | 82 |
DEL PEAK 19(10Q24.2) MUTATED | 41 | 94 | 43 |
DEL PEAK 19(10Q24.2) WILD-TYPE | 79 | 102 | 39 |
P value = 0.00251 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 96 | 128 | 58 |
DEL PEAK 19(10Q24.2) MUTATED | 42 | 45 | 53 | 38 |
DEL PEAK 19(10Q24.2) WILD-TYPE | 74 | 51 | 75 | 20 |
P value = 0.0016 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 182 | 144 |
DEL PEAK 19(10Q24.2) MUTATED | 48 | 102 | 55 |
DEL PEAK 19(10Q24.2) WILD-TYPE | 73 | 80 | 89 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 20(11P15.5) MUTATED | 77 | 163 | 106 |
DEL PEAK 20(11P15.5) WILD-TYPE | 94 | 43 | 96 |
P value = 0.00776 (Fisher's exact test), Q value = 0.052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
DEL PEAK 20(11P15.5) MUTATED | 89 | 100 | 148 |
DEL PEAK 20(11P15.5) WILD-TYPE | 83 | 75 | 73 |
P value = 0.0096 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
DEL PEAK 20(11P15.5) MUTATED | 76 | 38 | 91 | 56 |
DEL PEAK 20(11P15.5) WILD-TYPE | 29 | 33 | 74 | 50 |
P value = 0.00097 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
DEL PEAK 22(12Q24.33) MUTATED | 62 | 99 | 51 |
DEL PEAK 22(12Q24.33) WILD-TYPE | 153 | 117 | 75 |
P value = 0.0144 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
DEL PEAK 22(12Q24.33) MUTATED | 34 | 21 | 19 | 35 | 11 | 34 | 7 | 19 | 11 | 21 |
DEL PEAK 22(12Q24.33) WILD-TYPE | 51 | 36 | 39 | 47 | 23 | 41 | 27 | 17 | 41 | 21 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 22(12Q24.33) MUTATED | 56 | 113 | 51 |
DEL PEAK 22(12Q24.33) WILD-TYPE | 115 | 93 | 151 |
P value = 0.0196 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
DEL PEAK 22(12Q24.33) MUTATED | 51 | 75 | 91 |
DEL PEAK 22(12Q24.33) WILD-TYPE | 121 | 100 | 130 |
P value = 0.0335 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 116 | 36 |
DEL PEAK 22(12Q24.33) MUTATED | 47 | 37 | 8 |
DEL PEAK 22(12Q24.33) WILD-TYPE | 59 | 79 | 28 |
P value = 0.015 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 182 | 144 |
DEL PEAK 22(12Q24.33) MUTATED | 42 | 82 | 43 |
DEL PEAK 22(12Q24.33) WILD-TYPE | 79 | 100 | 101 |
P value = 0.00447 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
DEL PEAK 22(12Q24.33) MUTATED | 54 | 20 | 60 | 33 |
DEL PEAK 22(12Q24.33) WILD-TYPE | 51 | 51 | 105 | 73 |
P value = 0.0107 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
DEL PEAK 23(13Q14.2) MUTATED | 133 | 150 | 67 |
DEL PEAK 23(13Q14.2) WILD-TYPE | 82 | 66 | 59 |
P value = 0.0157 (Fisher's exact test), Q value = 0.088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
DEL PEAK 23(13Q14.2) MUTATED | 211 | 88 | 51 |
DEL PEAK 23(13Q14.2) WILD-TYPE | 99 | 70 | 38 |
P value = 0.0426 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
DEL PEAK 23(13Q14.2) MUTATED | 52 | 37 | 42 | 52 | 26 | 37 | 16 | 27 | 32 | 29 |
DEL PEAK 23(13Q14.2) WILD-TYPE | 33 | 20 | 16 | 30 | 8 | 38 | 18 | 9 | 20 | 13 |
P value = 0.00019 (Fisher's exact test), Q value = 0.0026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 23(13Q14.2) MUTATED | 90 | 150 | 124 |
DEL PEAK 23(13Q14.2) WILD-TYPE | 81 | 56 | 78 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
DEL PEAK 23(13Q14.2) MUTATED | 109 | 88 | 161 |
DEL PEAK 23(13Q14.2) WILD-TYPE | 63 | 87 | 60 |
P value = 0.00173 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 196 | 82 |
DEL PEAK 23(13Q14.2) MUTATED | 63 | 139 | 46 |
DEL PEAK 23(13Q14.2) WILD-TYPE | 57 | 57 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 24(14Q23.3) MUTATED | 70 | 104 | 131 |
DEL PEAK 24(14Q23.3) WILD-TYPE | 101 | 102 | 71 |
P value = 0.00567 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
DEL PEAK 25(15Q11.2) MUTATED | 130 | 98 | 62 |
DEL PEAK 25(15Q11.2) WILD-TYPE | 85 | 118 | 64 |
P value = 0.0366 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
DEL PEAK 25(15Q11.2) MUTATED | 164 | 71 | 55 |
DEL PEAK 25(15Q11.2) WILD-TYPE | 146 | 87 | 34 |
P value = 0.0103 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 164 | 232 |
DEL PEAK 25(15Q11.2) MUTATED | 77 | 74 | 138 |
DEL PEAK 25(15Q11.2) WILD-TYPE | 82 | 90 | 94 |
P value = 0.00626 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
DEL PEAK 25(15Q11.2) MUTATED | 35 | 28 | 36 | 40 | 19 | 43 | 23 | 21 | 32 | 12 |
DEL PEAK 25(15Q11.2) WILD-TYPE | 50 | 29 | 22 | 42 | 15 | 32 | 11 | 15 | 20 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 25(15Q11.2) MUTATED | 68 | 76 | 155 |
DEL PEAK 25(15Q11.2) WILD-TYPE | 103 | 130 | 47 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
DEL PEAK 25(15Q11.2) MUTATED | 114 | 82 | 100 |
DEL PEAK 25(15Q11.2) WILD-TYPE | 58 | 93 | 121 |
P value = 0.0051 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 67 | 91 |
DEL PEAK 25(15Q11.2) MUTATED | 47 | 30 | 61 |
DEL PEAK 25(15Q11.2) WILD-TYPE | 53 | 37 | 30 |
P value = 0.0253 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 182 | 144 |
DEL PEAK 25(15Q11.2) MUTATED | 54 | 110 | 79 |
DEL PEAK 25(15Q11.2) WILD-TYPE | 67 | 72 | 65 |
P value = 0.01 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
DEL PEAK 25(15Q11.2) MUTATED | 43 | 40 | 102 | 58 |
DEL PEAK 25(15Q11.2) WILD-TYPE | 62 | 31 | 63 | 48 |
P value = 0.026 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
DEL PEAK 26(15Q15.1) MUTATED | 150 | 124 | 78 |
DEL PEAK 26(15Q15.1) WILD-TYPE | 65 | 92 | 48 |
P value = 0.0217 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 164 | 232 |
DEL PEAK 26(15Q15.1) MUTATED | 95 | 94 | 162 |
DEL PEAK 26(15Q15.1) WILD-TYPE | 64 | 70 | 70 |
P value = 0.00298 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
DEL PEAK 26(15Q15.1) MUTATED | 43 | 32 | 42 | 51 | 23 | 52 | 23 | 26 | 41 | 18 |
DEL PEAK 26(15Q15.1) WILD-TYPE | 42 | 25 | 16 | 31 | 11 | 23 | 11 | 10 | 11 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 26(15Q15.1) MUTATED | 81 | 115 | 167 |
DEL PEAK 26(15Q15.1) WILD-TYPE | 90 | 91 | 35 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
DEL PEAK 26(15Q15.1) MUTATED | 134 | 97 | 129 |
DEL PEAK 26(15Q15.1) WILD-TYPE | 38 | 78 | 92 |
P value = 0.0109 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 67 | 91 |
DEL PEAK 26(15Q15.1) MUTATED | 61 | 39 | 71 |
DEL PEAK 26(15Q15.1) WILD-TYPE | 39 | 28 | 20 |
P value = 0.00193 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
DEL PEAK 26(15Q15.1) MUTATED | 58 | 48 | 124 | 61 |
DEL PEAK 26(15Q15.1) WILD-TYPE | 47 | 23 | 41 | 45 |
P value = 0.0289 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
DEL PEAK 27(16P13.3) MUTATED | 42 | 29 | 25 | 45 | 21 | 43 | 21 | 29 | 25 | 19 |
DEL PEAK 27(16P13.3) WILD-TYPE | 43 | 28 | 33 | 37 | 13 | 32 | 13 | 7 | 27 | 23 |
P value = 0.0329 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 164 | 232 |
DEL PEAK 28(16Q22.1) MUTATED | 127 | 120 | 195 |
DEL PEAK 28(16Q22.1) WILD-TYPE | 32 | 44 | 37 |
P value = 0.00081 (Fisher's exact test), Q value = 0.0089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 28(16Q22.1) MUTATED | 119 | 171 | 171 |
DEL PEAK 28(16Q22.1) WILD-TYPE | 52 | 35 | 31 |
P value = 0.0477 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
DEL PEAK 28(16Q22.1) MUTATED | 89 | 50 | 140 | 83 |
DEL PEAK 28(16Q22.1) WILD-TYPE | 16 | 21 | 25 | 23 |
P value = 0.00012 (Fisher's exact test), Q value = 0.0018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 29(16Q23.1) MUTATED | 114 | 168 | 170 |
DEL PEAK 29(16Q23.1) WILD-TYPE | 57 | 38 | 32 |
P value = 0.0488 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 105 | 71 | 165 | 106 |
DEL PEAK 29(16Q23.1) MUTATED | 87 | 51 | 140 | 79 |
DEL PEAK 29(16Q23.1) WILD-TYPE | 18 | 20 | 25 | 27 |
P value = 0.00056 (Fisher's exact test), Q value = 0.0065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 31(17Q11.2) MUTATED | 136 | 184 | 152 |
DEL PEAK 31(17Q11.2) WILD-TYPE | 35 | 22 | 50 |
P value = 0.00249 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
DEL PEAK 31(17Q11.2) MUTATED | 127 | 145 | 193 |
DEL PEAK 31(17Q11.2) WILD-TYPE | 45 | 30 | 28 |
P value = 0.0357 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 96 | 128 | 58 |
DEL PEAK 31(17Q11.2) MUTATED | 92 | 85 | 95 | 50 |
DEL PEAK 31(17Q11.2) WILD-TYPE | 24 | 11 | 33 | 8 |
P value = 0.00264 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 32(18Q23) MUTATED | 103 | 154 | 124 |
DEL PEAK 32(18Q23) WILD-TYPE | 68 | 52 | 78 |
P value = 4e-04 (Fisher's exact test), Q value = 0.0049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 33(19P13.3) MUTATED | 142 | 178 | 192 |
DEL PEAK 33(19P13.3) WILD-TYPE | 29 | 28 | 10 |
P value = 0.0169 (Fisher's exact test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
DEL PEAK 33(19P13.3) MUTATED | 161 | 153 | 187 |
DEL PEAK 33(19P13.3) WILD-TYPE | 11 | 22 | 34 |
P value = 0.00016 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
DEL PEAK 34(19Q13.33) MUTATED | 127 | 117 | 46 |
DEL PEAK 34(19Q13.33) WILD-TYPE | 88 | 99 | 80 |
P value = 0.00252 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
DEL PEAK 34(19Q13.33) MUTATED | 178 | 64 | 48 |
DEL PEAK 34(19Q13.33) WILD-TYPE | 132 | 94 | 41 |
P value = 0.046 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 164 | 232 |
DEL PEAK 34(19Q13.33) MUTATED | 78 | 76 | 135 |
DEL PEAK 34(19Q13.33) WILD-TYPE | 81 | 88 | 97 |
P value = 0.0205 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_10 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|---|
ALL | 85 | 57 | 58 | 82 | 34 | 75 | 34 | 36 | 52 | 42 |
DEL PEAK 34(19Q13.33) MUTATED | 44 | 35 | 36 | 50 | 10 | 32 | 18 | 16 | 23 | 25 |
DEL PEAK 34(19Q13.33) WILD-TYPE | 41 | 22 | 22 | 32 | 24 | 43 | 16 | 20 | 29 | 17 |
P value = 0.0144 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 34(19Q13.33) MUTATED | 86 | 93 | 120 |
DEL PEAK 34(19Q13.33) WILD-TYPE | 85 | 113 | 82 |
P value = 0.00247 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
DEL PEAK 34(19Q13.33) MUTATED | 103 | 73 | 118 |
DEL PEAK 34(19Q13.33) WILD-TYPE | 69 | 102 | 103 |
P value = 0.029 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 120 | 196 | 82 |
DEL PEAK 34(19Q13.33) MUTATED | 47 | 104 | 45 |
DEL PEAK 34(19Q13.33) WILD-TYPE | 73 | 92 | 37 |
P value = 0.00668 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 67 | 91 |
DEL PEAK 34(19Q13.33) MUTATED | 37 | 35 | 54 |
DEL PEAK 34(19Q13.33) WILD-TYPE | 63 | 32 | 37 |
P value = 0.0165 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 216 | 126 |
DEL PEAK 35(19Q13.43) MUTATED | 121 | 104 | 51 |
DEL PEAK 35(19Q13.43) WILD-TYPE | 94 | 112 | 75 |
P value = 0.00011 (Fisher's exact test), Q value = 0.0018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 35(19Q13.43) MUTATED | 84 | 80 | 121 |
DEL PEAK 35(19Q13.43) WILD-TYPE | 87 | 126 | 81 |
P value = 6e-05 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
DEL PEAK 35(19Q13.43) MUTATED | 105 | 64 | 111 |
DEL PEAK 35(19Q13.43) WILD-TYPE | 67 | 111 | 110 |
P value = 0.0427 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 12 | 10 |
DEL PEAK 35(19Q13.43) MUTATED | 8 | 2 |
DEL PEAK 35(19Q13.43) WILD-TYPE | 4 | 8 |
P value = 0.0225 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 6 | 2 | 2 | 6 | 4 | 2 |
DEL PEAK 35(19Q13.43) MUTATED | 3 | 2 | 2 | 1 | 0 | 2 |
DEL PEAK 35(19Q13.43) WILD-TYPE | 3 | 0 | 0 | 5 | 4 | 0 |
P value = 0.0403 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 310 | 158 | 89 |
DEL PEAK 36(21Q22.3) MUTATED | 117 | 58 | 46 |
DEL PEAK 36(21Q22.3) WILD-TYPE | 193 | 100 | 43 |
P value = 0.0341 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 164 | 232 |
DEL PEAK 37(22Q13.32) MUTATED | 136 | 135 | 211 |
DEL PEAK 37(22Q13.32) WILD-TYPE | 23 | 29 | 21 |
P value = 0.0166 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 206 | 202 |
DEL PEAK 37(22Q13.32) MUTATED | 138 | 182 | 183 |
DEL PEAK 37(22Q13.32) WILD-TYPE | 33 | 24 | 19 |
P value = 0.0459 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 96 | 128 | 58 |
DEL PEAK 37(22Q13.32) MUTATED | 94 | 90 | 111 | 49 |
DEL PEAK 37(22Q13.32) WILD-TYPE | 22 | 6 | 17 | 9 |
P value = 0.0133 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 116 | 36 |
DEL PEAK 37(22Q13.32) MUTATED | 88 | 100 | 36 |
DEL PEAK 37(22Q13.32) WILD-TYPE | 18 | 16 | 0 |
P value = 0.0377 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 182 | 144 |
DEL PEAK 37(22Q13.32) MUTATED | 97 | 164 | 128 |
DEL PEAK 37(22Q13.32) WILD-TYPE | 24 | 18 | 16 |
P value = 0.0208 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 172 | 175 | 221 |
DEL PEAK 38(XP21.1) MUTATED | 93 | 107 | 150 |
DEL PEAK 38(XP21.1) WILD-TYPE | 79 | 68 | 71 |
-
Copy number data file = all_lesions.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/OV-TP/15096461/transformed.cor.cli.txt
-
Molecular subtype file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/OV-TP/15120653/OV-TP.transferedmergedcluster.txt
-
Number of patients = 579
-
Number of significantly focal cnvs = 71
-
Number of molecular subtypes = 14
-
Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.