name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme	callscheme_name	N_tot	nsil_tot	nnon_tot	rate_sil	rate_non
TCGA-04-1331-01A-01W-0486-08	66	66	0	56	0	0	coding only	34834024	10	55	2.870756e-07	1.578916e-06
TCGA-04-1332-01A-01W-0488-09	35	32	3	24	8.571429e-02	1	exome+100bp flanks	34834024	8	23	2.296605e-07	6.602740e-07
TCGA-04-1336-01A-01W-0488-09	68	66	2	54	2.941176e-02	0	coding only	34834024	11	53	3.157832e-07	1.521501e-06
TCGA-04-1337-01A-01W-0484-10	64	64	0	59	0	0	coding only	34834024	5	57	1.435378e-07	1.636331e-06
TCGA-04-1338-01A-01W-0484-10	144	144	0	118	0	0	coding only	34834024	25	114	7.176891e-07	3.272662e-06
TCGA-04-1342-01A-01W-0486-08	31	31	0	23	0	1	exome+100bp flanks	34834024	8	23	2.296605e-07	6.602740e-07
TCGA-04-1343-01A-01W-0488-09	71	66	5	49	7.042254e-02	1	exome+100bp flanks	34834024	17	45	4.880286e-07	1.291840e-06
TCGA-04-1346-01A-01W-0488-09	53	51	2	36	3.773585e-02	1	exome+100bp flanks	34834024	13	32	3.731983e-07	9.186421e-07
TCGA-04-1347-01A-01W-0488-09	130	123	7	95	5.384615e-02	1	exome+100bp flanks	34834024	26	93	7.463967e-07	2.669804e-06
TCGA-04-1348-01A-01W-0494-09	46	44	2	39	4.347826e-02	1	exome+100bp flanks	34834024	4	35	1.148303e-07	1.004765e-06
TCGA-04-1349-01A-01W-0494-09	38	38	0	32	0	1	exome+100bp flanks	34834024	6	32	1.722454e-07	9.186421e-07
TCGA-04-1350-01A-01W-0490-10	36	36	0	33	0	1	exome+100bp flanks	34834024	3	33	8.612269e-08	9.473496e-07
TCGA-04-1351-01A-01W-0490-10	1	1	0	1	0	1	exome+100bp flanks	34834024	0	1	0	2.870756e-08
TCGA-04-1353-01A-01D-1526-09	31	30	1	20	3.225806e-02	1	exome+100bp flanks	34834024	10	15	2.870756e-07	4.306135e-07
TCGA-04-1356-01A-01W-0492-08	51	51	0	38	0	0	coding only	34834024	13	38	3.731983e-07	1.090887e-06
TCGA-04-1357-01A-01W-0492-08	41	41	0	32	0	1	exome+100bp flanks	34834024	9	32	2.583681e-07	9.186421e-07
TCGA-04-1361-01A-01W-0494-09	69	66	3	53	4.347826e-02	1	exome+100bp flanks	34834024	13	50	3.731983e-07	1.435378e-06
TCGA-04-1362-01A-01W-0494-09	76	73	3	58	3.947368e-02	1	exome+100bp flanks	34834024	13	56	3.731983e-07	1.607624e-06
TCGA-04-1364-01A-01W-0490-10	40	40	0	35	0	1	exome+100bp flanks	34834024	5	34	1.435378e-07	9.760572e-07
TCGA-04-1365-01A-01W-0490-10	38	38	0	36	0	1	exome+100bp flanks	34834024	2	33	5.741513e-08	9.473496e-07
TCGA-04-1367-01A-01W-0492-08	81	81	0	64	0	0	coding only	34834024	17	62	4.880286e-07	1.779869e-06
TCGA-04-1369-01A-02D-1526-09	86	84	2	64	2.325581e-02	0	coding only	34834024	20	60	5.741513e-07	1.722454e-06
TCGA-04-1514-01A-01W-0552-10	31	31	0	25	0	1	exome+100bp flanks	34834024	6	25	1.722454e-07	7.176891e-07
TCGA-04-1516-01A-01D-1526-09	74	69	5	58	6.756757e-02	1	exome+100bp flanks	34834024	10	55	2.870756e-07	1.578916e-06
TCGA-04-1517-01A-01W-0615-10	20	20	0	17	0	1	exome+100bp flanks	34834024	3	17	8.612269e-08	4.880286e-07
TCGA-04-1519-01A-01W-0615-10	3	3	0	2	0	1	exome+100bp flanks	34834024	1	2	2.870756e-08	5.741513e-08
TCGA-04-1525-01A-01W-0615-10	21	21	0	17	0	1	exome+100bp flanks	34834024	4	15	1.148303e-07	4.306135e-07
TCGA-04-1530-01A-02W-0552-10	70	70	0	55	0	0	coding only	34834024	14	54	4.019059e-07	1.550208e-06
TCGA-04-1542-01A-01W-0553-09	73	67	6	55	8.219178e-02	1	exome+100bp flanks	34834024	12	54	3.444908e-07	1.550208e-06
TCGA-04-1638-01A-01W-0639-09	62	57	5	46	8.064516e-02	1	exome+100bp flanks	34834024	11	42	3.157832e-07	1.205718e-06
TCGA-04-1644-01B-01D-1526-09	46	42	4	37	8.695652e-02	1	exome+100bp flanks	34834024	5	37	1.435378e-07	1.062180e-06
TCGA-04-1646-01A-01W-0639-09	35	34	1	25	2.857143e-02	1	exome+100bp flanks	34834024	6	25	1.722454e-07	7.176891e-07
TCGA-04-1648-01A-01W-0639-09	49	41	8	27	1.632653e-01	1	exome+100bp flanks	34834024	14	25	4.019059e-07	7.176891e-07
TCGA-04-1649-01A-01W-0639-09	71	68	3	52	4.225352e-02	1	exome+100bp flanks	34834024	14	46	4.019059e-07	1.320548e-06
TCGA-04-1651-01A-01W-0639-09	73	67	6	45	8.219178e-02	1	exome+100bp flanks	34834024	16	41	4.593210e-07	1.177010e-06
TCGA-04-1652-01A-01W-0639-09	83	76	7	49	8.433735e-02	1	exome+100bp flanks	34834024	26	46	7.463967e-07	1.320548e-06
TCGA-04-1655-01A-01W-0633-09	60	56	4	44	6.666667e-02	1	exome+100bp flanks	34834024	12	42	3.444908e-07	1.205718e-06
TCGA-09-0364-01A-02W-0370-10	13	13	0	13	0	1	exome+100bp flanks	34834024	0	13	0	3.731983e-07
TCGA-09-0366-01A-01W-0372-09	45	44	1	35	2.222222e-02	1	exome+100bp flanks	34834024	8	34	2.296605e-07	9.760572e-07
TCGA-09-0369-01A-01W-0372-09	69	62	7	54	1.014493e-01	1	exome+100bp flanks	34834024	8	53	2.296605e-07	1.521501e-06
TCGA-09-1659-01B-01W-0615-10	18	18	0	14	0	1	exome+100bp flanks	34834024	4	14	1.148303e-07	4.019059e-07
TCGA-09-1661-01B-01W-0615-10	40	40	0	35	0	1	exome+100bp flanks	34834024	5	35	1.435378e-07	1.004765e-06
TCGA-09-1662-01A-01W-0615-10	34	34	0	27	0	1	exome+100bp flanks	34834024	7	27	2.009530e-07	7.751042e-07
TCGA-09-1664-01A-01W-0639-09	19	18	1	13	5.263158e-02	1	exome+100bp flanks	34834024	4	12	1.148303e-07	3.444908e-07
TCGA-09-1665-01B-01W-0615-10	97	97	0	69	0	0	coding only	34834024	28	68	8.038118e-07	1.952114e-06
TCGA-09-1666-01A-01W-0615-10	18	18	0	16	0	1	exome+100bp flanks	34834024	2	16	5.741513e-08	4.593210e-07
TCGA-09-1669-01A-01W-0615-10	50	50	0	40	0	0	coding only	34834024	10	39	2.870756e-07	1.119595e-06
TCGA-09-1670-01A-01W-0633-09	35	33	2	28	5.714286e-02	1	exome+100bp flanks	34834024	4	25	1.148303e-07	7.176891e-07
TCGA-09-1672-01A-01W-0633-09	24	23	1	18	4.166667e-02	1	exome+100bp flanks	34834024	4	16	1.148303e-07	4.593210e-07
TCGA-09-1673-01A-01W-0633-09	49	48	1	40	2.040816e-02	1	exome+100bp flanks	34834024	8	37	2.296605e-07	1.062180e-06
TCGA-09-1674-01A-01W-0633-09	136	130	6	104	4.411765e-02	1	exome+100bp flanks	34834024	23	99	6.602740e-07	2.842049e-06
TCGA-09-1675-01B-01W-0633-09	70	65	5	50	7.142857e-02	1	exome+100bp flanks	34834024	14	48	4.019059e-07	1.377963e-06
TCGA-09-2044-01B-01W-0799-08	89	89	0	71	0	0	coding only	34834024	18	68	5.167362e-07	1.952114e-06
TCGA-09-2045-01A-01W-0799-08	34	34	0	28	0	1	exome+100bp flanks	34834024	6	28	1.722454e-07	8.038118e-07
TCGA-09-2049-01D-01W-0799-08	119	119	0	93	0	0	coding only	34834024	26	92	7.463967e-07	2.641096e-06
TCGA-09-2050-01A-01W-0799-08	111	111	0	85	0	0	coding only	34834024	25	85	7.176891e-07	2.440143e-06
TCGA-09-2051-01A-01W-0799-08	4	4	0	4	0	1	exome+100bp flanks	34834024	0	4	0	1.148303e-07
TCGA-09-2053-01C-01W-0722-08	36	36	0	24	0	1	exome+100bp flanks	34834024	12	24	3.444908e-07	6.889816e-07
TCGA-09-2056-01B-01W-0722-08	71	71	0	62	0	0	coding only	34834024	9	62	2.583681e-07	1.779869e-06
TCGA-10-0926-01A-01W-0420-08	39	39	0	29	0	1	exome+100bp flanks	34834024	10	29	2.870756e-07	8.325194e-07
TCGA-10-0927-01A-02W-0419-10	27	27	0	21	0	1	exome+100bp flanks	34834024	6	21	1.722454e-07	6.028589e-07
TCGA-10-0928-01A-02W-0419-10	44	44	0	35	0	1	exome+100bp flanks	34834024	9	33	2.583681e-07	9.473496e-07
TCGA-10-0930-01A-02W-0421-09	173	166	7	133	4.046243e-02	1	exome+100bp flanks	34834024	30	125	8.612269e-07	3.588446e-06
TCGA-10-0931-01A-01W-0420-08	26	26	0	21	0	1	exome+100bp flanks	34834024	5	21	1.435378e-07	6.028589e-07
TCGA-10-0933-01A-01W-0421-09	45	42	3	33	6.666667e-02	1	exome+100bp flanks	34834024	8	32	2.296605e-07	9.186421e-07
TCGA-10-0934-01A-02W-0420-08	18	18	0	14	0	1	exome+100bp flanks	34834024	4	14	1.148303e-07	4.019059e-07
TCGA-10-0935-01A-03W-0421-09	50	48	2	39	4.000000e-02	1	exome+100bp flanks	34834024	9	38	2.583681e-07	1.090887e-06
TCGA-10-0937-01A-02W-0419-10	41	41	0	33	0	1	exome+100bp flanks	34834024	8	33	2.296605e-07	9.473496e-07
TCGA-10-0938-01A-02W-0419-10	58	58	0	45	0	0	coding only	34834024	13	44	3.731983e-07	1.263133e-06
TCGA-13-0714-01A-01W-0370-10	70	70	0	61	0	0	coding only	34834024	7	61	2.009530e-07	1.751161e-06
TCGA-13-0717-01A-01W-0370-10	40	40	0	36	0	1	exome+100bp flanks	34834024	3	35	8.612269e-08	1.004765e-06
TCGA-13-0720-01A-01W-0370-10	55	55	0	43	0	0	coding only	34834024	12	43	3.444908e-07	1.234425e-06
TCGA-13-0723-01A-02W-0372-09	50	45	5	36	1.000000e-01	1	exome+100bp flanks	34834024	9	34	2.583681e-07	9.760572e-07
TCGA-13-0724-01A-01W-0372-09	49	47	2	38	4.081633e-02	1	exome+100bp flanks	34834024	8	37	2.296605e-07	1.062180e-06
TCGA-13-0726-01A-01W-0372-09	74	72	2	59	2.702703e-02	0	coding only	34834024	13	58	3.731983e-07	1.665039e-06
TCGA-13-0727-01A-01W-0370-10	31	31	0	22	0	1	exome+100bp flanks	34834024	9	22	2.583681e-07	6.315664e-07
TCGA-13-0730-01A-01W-0370-10	40	40	0	28	0	1	exome+100bp flanks	34834024	11	28	3.157832e-07	8.038118e-07
TCGA-13-0751-01A-01D-0446-08	31	31	0	20	0	1	exome+100bp flanks	34834024	11	20	3.157832e-07	5.741513e-07
TCGA-13-0755-01A-01W-0372-09	101	98	3	75	2.970297e-02	0	coding only	34834024	22	73	6.315664e-07	2.095652e-06
TCGA-13-0760-01A-01W-0372-09	201	192	9	153	4.477612e-02	1	exome+100bp flanks	34834024	38	146	1.090887e-06	4.191304e-06
TCGA-13-0761-01A-01W-0370-10	57	57	0	48	0	0	coding only	34834024	9	47	2.583681e-07	1.349256e-06
TCGA-13-0762-01A-01W-0370-10	68	68	0	59	0	0	coding only	34834024	9	59	2.583681e-07	1.693746e-06
TCGA-13-0765-01A-01W-0372-09	30	28	2	22	6.666667e-02	1	exome+100bp flanks	34834024	6	20	1.722454e-07	5.741513e-07
TCGA-13-0791-01A-01W-0372-09	82	77	5	61	6.097561e-02	1	exome+100bp flanks	34834024	15	57	4.306135e-07	1.636331e-06
TCGA-13-0792-01A-01W-0370-10	67	67	0	59	0	0	coding only	34834024	8	57	2.296605e-07	1.636331e-06
TCGA-13-0793-01A-01W-0370-10	64	64	0	47	0	0	coding only	34834024	15	43	4.306135e-07	1.234425e-06
TCGA-13-0795-01A-01W-0372-09	74	72	2	55	2.702703e-02	0	coding only	34834024	17	53	4.880286e-07	1.521501e-06
TCGA-13-0800-01A-01W-0372-09	56	54	2	41	3.571429e-02	1	exome+100bp flanks	34834024	12	38	3.444908e-07	1.090887e-06
TCGA-13-0801-01A-01W-0370-10	19	19	0	19	0	1	exome+100bp flanks	34834024	0	18	0	5.167362e-07
TCGA-13-0802-01A-01W-0370-10	8	8	0	8	0	1	exome+100bp flanks	34834024	0	8	0	2.296605e-07
TCGA-13-0804-01A-01W-0372-09	44	41	3	31	6.818182e-02	1	exome+100bp flanks	34834024	9	29	2.583681e-07	8.325194e-07
TCGA-13-0807-01B-02W-0421-09	64	62	2	49	3.125000e-02	1	exome+100bp flanks	34834024	10	48	2.870756e-07	1.377963e-06
TCGA-13-0883-01A-02W-0420-08	56	56	0	47	0	0	coding only	34834024	9	47	2.583681e-07	1.349256e-06
TCGA-13-0884-01B-01W-0494-09	99	96	3	78	3.030303e-02	1	exome+100bp flanks	34834024	17	75	4.880286e-07	2.153067e-06
TCGA-13-0885-01A-02W-0421-09	178	172	6	129	3.370787e-02	1	exome+100bp flanks	34834024	41	123	1.177010e-06	3.531030e-06
TCGA-13-0886-01A-01W-0420-08	49	49	0	37	0	1	exome+100bp flanks	34834024	12	37	3.444908e-07	1.062180e-06
TCGA-13-0887-01A-01W-0421-09	119	112	7	85	5.882353e-02	1	exome+100bp flanks	34834024	27	79	7.751042e-07	2.267898e-06
TCGA-13-0889-01A-01W-0419-10	30	30	0	28	0	1	exome+100bp flanks	34834024	2	27	5.741513e-08	7.751042e-07
TCGA-13-0890-01A-01W-0421-09	70	64	6	52	8.571429e-02	1	exome+100bp flanks	34834024	11	49	3.157832e-07	1.406671e-06
TCGA-13-0891-01A-01W-0420-08	24	24	0	19	0	1	exome+100bp flanks	34834024	5	18	1.435378e-07	5.167362e-07
TCGA-13-0893-01B-01W-0494-09	84	79	5	60	5.952381e-02	1	exome+100bp flanks	34834024	19	58	5.454437e-07	1.665039e-06
TCGA-13-0894-01B-01W-0494-09	62	58	4	47	6.451613e-02	1	exome+100bp flanks	34834024	10	47	2.870756e-07	1.349256e-06
TCGA-13-0897-01A-01W-0421-09	55	54	1	41	1.818182e-02	0	coding only	34834024	13	39	3.731983e-07	1.119595e-06
TCGA-13-0899-01A-01W-0420-08	28	28	0	20	0	1	exome+100bp flanks	34834024	8	20	2.296605e-07	5.741513e-07
TCGA-13-0900-01B-01W-0490-10	101	101	0	90	0	0	coding only	34834024	11	88	3.157832e-07	2.526266e-06
TCGA-13-0901-01B-01W-0490-10	3	3	0	3	0	1	exome+100bp flanks	34834024	0	2	0	5.741513e-08
TCGA-13-0903-01A-01W-0421-09	67	66	1	54	1.492537e-02	0	coding only	34834024	9	52	2.583681e-07	1.492793e-06
TCGA-13-0904-01A-02W-0420-08	100	100	0	72	0	0	coding only	34834024	27	71	7.751042e-07	2.038237e-06
TCGA-13-0905-01B-01W-0492-08	61	61	0	43	0	0	coding only	34834024	18	43	5.167362e-07	1.234425e-06
TCGA-13-0906-01A-01W-0419-10	99	99	0	85	0	0	coding only	34834024	14	82	4.019059e-07	2.354020e-06
TCGA-13-0910-01A-01W-0421-09	31	28	3	22	9.677419e-02	1	exome+100bp flanks	34834024	6	21	1.722454e-07	6.028589e-07
TCGA-13-0911-01A-01W-0420-08	21	21	0	17	0	1	exome+100bp flanks	34834024	4	17	1.148303e-07	4.880286e-07
TCGA-13-0912-01A-01W-0421-09	38	36	2	26	5.263158e-02	1	exome+100bp flanks	34834024	10	25	2.870756e-07	7.176891e-07
TCGA-13-0913-01A-01W-0420-08	81	81	0	62	0	0	coding only	34834024	19	62	5.454437e-07	1.779869e-06
TCGA-13-0916-01A-01W-0420-08	67	67	0	54	0	0	coding only	34834024	13	53	3.731983e-07	1.521501e-06
TCGA-13-0919-01A-01W-0419-10	61	61	0	50	0	0	coding only	34834024	11	49	3.157832e-07	1.406671e-06
TCGA-13-0920-01A-01W-0421-09	129	121	8	89	6.201550e-02	1	exome+100bp flanks	34834024	31	84	8.899345e-07	2.411435e-06
TCGA-13-0923-01A-01W-0420-08	118	118	0	102	0	0	coding only	34834024	16	102	4.593210e-07	2.928172e-06
TCGA-13-0924-01A-01W-0421-09	68	67	1	56	1.470588e-02	0	coding only	34834024	11	56	3.157832e-07	1.607624e-06
TCGA-13-1403-01A-01W-0494-09	54	54	0	46	0	0	coding only	34834024	7	45	2.009530e-07	1.291840e-06
TCGA-13-1404-01A-01W-0494-09	62	56	6	47	9.677419e-02	1	exome+100bp flanks	34834024	9	45	2.583681e-07	1.291840e-06
TCGA-13-1405-01A-01W-0494-09	38	34	4	26	1.052632e-01	1	exome+100bp flanks	34834024	8	25	2.296605e-07	7.176891e-07
TCGA-13-1407-01A-01W-0490-10	35	35	0	26	0	1	exome+100bp flanks	34834024	9	25	2.583681e-07	7.176891e-07
TCGA-13-1408-01A-01W-0490-10	85	85	0	80	0	0	coding only	34834024	5	78	1.435378e-07	2.239190e-06
TCGA-13-1409-01A-01W-0492-08	49	49	0	37	0	1	exome+100bp flanks	34834024	12	37	3.444908e-07	1.062180e-06
TCGA-13-1410-01A-01W-0492-08	59	59	0	49	0	0	coding only	34834024	10	49	2.870756e-07	1.406671e-06
TCGA-13-1411-01A-01W-0494-09	54	53	1	38	1.851852e-02	0	coding only	34834024	15	36	4.306135e-07	1.033472e-06
TCGA-13-1412-01A-01W-0494-09	39	39	0	28	0	1	exome+100bp flanks	34834024	10	28	2.870756e-07	8.038118e-07
TCGA-13-1477-01A-01D-0472-08	5	5	0	4	0	1	exome+100bp flanks	34834024	1	4	2.870756e-08	1.148303e-07
TCGA-13-1481-01A-01W-0549-09	116	112	4	89	3.448276e-02	1	exome+100bp flanks	34834024	23	85	6.602740e-07	2.440143e-06
TCGA-13-1482-01A-01W-0549-09	71	67	4	52	5.633803e-02	1	exome+100bp flanks	34834024	12	46	3.444908e-07	1.320548e-06
TCGA-13-1483-01A-01W-0549-09	67	61	6	50	8.955224e-02	1	exome+100bp flanks	34834024	11	46	3.157832e-07	1.320548e-06
TCGA-13-1484-01A-01W-0545-08	37	37	0	28	0	1	exome+100bp flanks	34834024	9	27	2.583681e-07	7.751042e-07
TCGA-13-1487-01A-01D-0472-08	37	37	0	25	0	1	exome+100bp flanks	34834024	12	25	3.444908e-07	7.176891e-07
TCGA-13-1488-01A-01W-0549-09	131	126	5	96	3.816794e-02	1	exome+100bp flanks	34834024	27	89	7.751042e-07	2.554973e-06
TCGA-13-1489-01A-01W-0549-09	62	61	1	47	1.612903e-02	0	coding only	34834024	14	45	4.019059e-07	1.291840e-06
TCGA-13-1491-01A-01W-0549-09	47	44	3	33	6.382979e-02	1	exome+100bp flanks	34834024	11	31	3.157832e-07	8.899345e-07
TCGA-13-1492-01A-01D-0472-08	39	39	0	28	0	1	exome+100bp flanks	34834024	11	28	3.157832e-07	8.038118e-07
TCGA-13-1494-01A-01W-0545-08	11	11	0	8	0	1	exome+100bp flanks	34834024	3	8	8.612269e-08	2.296605e-07
TCGA-13-1495-01A-01W-0545-08	35	35	0	25	0	1	exome+100bp flanks	34834024	9	23	2.583681e-07	6.602740e-07
TCGA-13-1496-01A-01W-0545-08	59	59	0	44	0	0	coding only	34834024	15	44	4.306135e-07	1.263133e-06
TCGA-13-1497-01A-01W-0549-09	147	143	4	115	2.721088e-02	0	coding only	34834024	28	110	8.038118e-07	3.157832e-06
TCGA-13-1498-01A-01W-0549-09	123	123	0	88	0	0	coding only	34834024	35	84	1.004765e-06	2.411435e-06
TCGA-13-1499-01A-01W-0549-09	75	69	6	51	8.000000e-02	1	exome+100bp flanks	34834024	17	50	4.880286e-07	1.435378e-06
TCGA-13-1501-01A-01W-0545-08	68	68	0	57	0	0	coding only	34834024	11	57	3.157832e-07	1.636331e-06
TCGA-13-1504-01A-01W-0545-08	34	34	0	27	0	1	exome+100bp flanks	34834024	7	27	2.009530e-07	7.751042e-07
TCGA-13-1505-01A-01D-0472-08	50	50	0	35	0	0	coding only	34834024	15	35	4.306135e-07	1.004765e-06
TCGA-13-1506-01A-01W-0549-09	28	26	2	21	7.142857e-02	1	exome+100bp flanks	34834024	4	20	1.148303e-07	5.741513e-07
TCGA-13-1507-01A-01W-0549-09	95	94	1	76	1.052632e-02	0	coding only	34834024	18	73	5.167362e-07	2.095652e-06
TCGA-13-1509-01A-01W-0549-09	99	93	6	74	6.060606e-02	1	exome+100bp flanks	34834024	18	69	5.167362e-07	1.980822e-06
TCGA-13-1510-01A-02D-0472-08	22	22	0	17	0	1	exome+100bp flanks	34834024	5	16	1.435378e-07	4.593210e-07
TCGA-13-1512-01A-01W-0545-08	55	55	0	41	0	0	coding only	34834024	14	40	4.019059e-07	1.148303e-06
TCGA-13-2057-01A-02D-1526-09	164	156	8	118	4.878049e-02	1	exome+100bp flanks	34834024	35	107	1.004765e-06	3.071709e-06
TCGA-13-2059-01A-01D-1526-09	86	83	3	62	3.488372e-02	1	exome+100bp flanks	34834024	20	60	5.741513e-07	1.722454e-06
TCGA-13-2060-01A-01W-0799-08	42	42	0	34	0	1	exome+100bp flanks	34834024	8	34	2.296605e-07	9.760572e-07
TCGA-13-2061-01A-01D-1526-09	98	94	4	69	4.081633e-02	1	exome+100bp flanks	34834024	23	65	6.602740e-07	1.865992e-06
TCGA-13-2065-01A-01D-1526-09	62	61	1	45	1.612903e-02	0	coding only	34834024	13	39	3.731983e-07	1.119595e-06
TCGA-13-2066-01A-01D-1526-09	61	54	7	45	1.147541e-01	1	exome+100bp flanks	34834024	9	41	2.583681e-07	1.177010e-06
TCGA-13-2071-01A-02D-1526-09	62	60	2	43	3.225806e-02	1	exome+100bp flanks	34834024	15	42	4.306135e-07	1.205718e-06
TCGA-20-0987-01A-02W-0486-08	22	22	0	15	0	1	exome+100bp flanks	34834024	7	14	2.009530e-07	4.019059e-07
TCGA-20-0990-01A-01W-0486-08	70	70	0	58	0	0	coding only	34834024	12	57	3.444908e-07	1.636331e-06
TCGA-20-0991-01A-03D-0428-08	67	67	0	46	0	0	coding only	34834024	21	46	6.028589e-07	1.320548e-06
TCGA-20-1682-01A-01W-0633-09	89	84	5	69	5.617978e-02	1	exome+100bp flanks	34834024	15	65	4.306135e-07	1.865992e-06
TCGA-20-1683-01A-01W-0633-09	94	88	6	66	6.382979e-02	1	exome+100bp flanks	34834024	22	60	6.315664e-07	1.722454e-06
TCGA-20-1684-01A-01W-0633-09	44	41	3	30	6.818182e-02	1	exome+100bp flanks	34834024	10	27	2.870756e-07	7.751042e-07
TCGA-20-1685-01A-01W-0633-09	70	66	4	49	5.714286e-02	1	exome+100bp flanks	34834024	16	42	4.593210e-07	1.205718e-06
TCGA-20-1686-01A-01W-0633-09	88	84	4	66	4.545455e-02	1	exome+100bp flanks	34834024	17	61	4.880286e-07	1.751161e-06
TCGA-20-1687-01A-01W-0633-09	85	81	4	59	4.705882e-02	1	exome+100bp flanks	34834024	19	51	5.454437e-07	1.464086e-06
TCGA-23-1021-01B-01W-0488-09	95	89	6	69	6.315789e-02	1	exome+100bp flanks	34834024	20	65	5.741513e-07	1.865992e-06
TCGA-23-1022-01A-02W-0488-09	210	200	10	166	4.761905e-02	1	exome+100bp flanks	34834024	31	157	8.899345e-07	4.507088e-06
TCGA-23-1023-01A-03W-0484-10	42	42	0	32	0	1	exome+100bp flanks	34834024	10	32	2.870756e-07	9.186421e-07
TCGA-23-1024-01A-02W-0484-10	41	41	0	32	0	1	exome+100bp flanks	34834024	9	32	2.583681e-07	9.186421e-07
TCGA-23-1026-01B-01W-0484-10	30	30	0	26	0	1	exome+100bp flanks	34834024	4	26	1.148303e-07	7.463967e-07
TCGA-23-1027-01A-02W-0486-08	37	37	0	33	0	1	exome+100bp flanks	34834024	4	33	1.148303e-07	9.473496e-07
TCGA-23-1028-01A-01W-0484-10	51	51	0	41	0	0	coding only	34834024	10	39	2.870756e-07	1.119595e-06
TCGA-23-1029-01B-01W-0639-09	89	86	3	64	3.370787e-02	1	exome+100bp flanks	34834024	22	57	6.315664e-07	1.636331e-06
TCGA-23-1030-01A-02W-0486-08	34	34	0	31	0	1	exome+100bp flanks	34834024	3	31	8.612269e-08	8.899345e-07
TCGA-23-1031-01A-01W-0486-08	84	84	0	64	0	0	coding only	34834024	20	63	5.741513e-07	1.808577e-06
TCGA-23-1032-01A-02W-0486-08	69	69	0	53	0	0	coding only	34834024	16	53	4.593210e-07	1.521501e-06
TCGA-23-1107-01A-01W-0484-10	7	7	0	7	0	1	exome+100bp flanks	34834024	0	7	0	2.009530e-07
TCGA-23-1109-01A-01W-0484-10	7	7	0	7	0	1	exome+100bp flanks	34834024	0	7	0	2.009530e-07
TCGA-23-1110-01A-01D-0428-08	102	102	0	83	0	0	coding only	34834024	19	81	5.454437e-07	2.325313e-06
TCGA-23-1111-01A-01W-0639-09	63	60	3	44	4.761905e-02	1	exome+100bp flanks	34834024	14	42	4.019059e-07	1.205718e-06
TCGA-23-1114-01B-01W-0633-09	115	114	1	87	8.695652e-03	0	coding only	34834024	26	80	7.463967e-07	2.296605e-06
TCGA-23-1116-01A-01W-0486-08	12	12	0	10	0	1	exome+100bp flanks	34834024	2	10	5.741513e-08	2.870756e-07
TCGA-23-1117-01A-02W-0488-09	115	109	6	79	5.217391e-02	1	exome+100bp flanks	34834024	30	75	8.612269e-07	2.153067e-06
TCGA-23-1118-01A-01W-0488-09	74	70	4	62	5.405405e-02	1	exome+100bp flanks	34834024	7	62	2.009530e-07	1.779869e-06
TCGA-23-1119-01A-02W-0484-10	15	15	0	15	0	1	exome+100bp flanks	34834024	0	14	0	4.019059e-07
TCGA-23-1120-01A-02W-0484-10	117	117	0	106	0	0	coding only	34834024	11	102	3.157832e-07	2.928172e-06
TCGA-23-1122-01A-01W-0486-08	89	89	0	68	0	0	coding only	34834024	21	68	6.028589e-07	1.952114e-06
TCGA-23-1123-01A-01W-0488-09	95	89	6	76	6.315789e-02	1	exome+100bp flanks	34834024	13	73	3.731983e-07	2.095652e-06
TCGA-23-1124-01A-01W-0488-09	163	155	8	127	4.907975e-02	1	exome+100bp flanks	34834024	24	124	6.889816e-07	3.559738e-06
TCGA-23-1809-01A-01W-0633-09	69	62	7	50	1.014493e-01	1	exome+100bp flanks	34834024	11	48	3.157832e-07	1.377963e-06
TCGA-23-2072-01A-01W-0722-08	51	51	0	41	0	0	coding only	34834024	10	40	2.870756e-07	1.148303e-06
TCGA-23-2077-01A-01W-0722-08	55	55	0	43	0	0	coding only	34834024	12	42	3.444908e-07	1.205718e-06
TCGA-23-2078-01A-01W-0722-08	60	60	0	50	0	0	coding only	34834024	10	50	2.870756e-07	1.435378e-06
TCGA-23-2079-01A-01W-0722-08	48	48	0	40	0	1	exome+100bp flanks	34834024	8	39	2.296605e-07	1.119595e-06
TCGA-23-2081-01A-01W-0722-08	44	44	0	32	0	1	exome+100bp flanks	34834024	12	32	3.444908e-07	9.186421e-07
TCGA-23-2641-01A-01D-1526-09	101	96	5	68	4.950495e-02	1	exome+100bp flanks	34834024	26	61	7.463967e-07	1.751161e-06
TCGA-23-2643-01A-01D-1526-09	49	45	4	32	8.163265e-02	1	exome+100bp flanks	34834024	9	29	2.583681e-07	8.325194e-07
TCGA-23-2645-01A-01W-1091-09	139	132	7	96	5.035971e-02	1	exome+100bp flanks	34834024	35	89	1.004765e-06	2.554973e-06
TCGA-23-2647-01A-01D-1526-09	59	57	2	44	3.389831e-02	1	exome+100bp flanks	34834024	13	42	3.731983e-07	1.205718e-06
TCGA-23-2649-01A-01D-1526-09	133	129	4	102	3.007519e-02	1	exome+100bp flanks	34834024	25	97	7.176891e-07	2.784634e-06
TCGA-24-0966-01A-01W-0977-09	40	38	2	30	5.000000e-02	1	exome+100bp flanks	34834024	6	29	1.722454e-07	8.325194e-07
TCGA-24-0968-01A-01W-0484-10	22	22	0	19	0	1	exome+100bp flanks	34834024	3	19	8.612269e-08	5.454437e-07
TCGA-24-0970-01B-01W-0486-08	25	25	0	19	0	1	exome+100bp flanks	34834024	6	19	1.722454e-07	5.454437e-07
TCGA-24-0975-01B-02W-0486-08	18	18	0	14	0	1	exome+100bp flanks	34834024	4	14	1.148303e-07	4.019059e-07
TCGA-24-0979-01A-01W-0486-08	86	86	0	69	0	0	coding only	34834024	16	68	4.593210e-07	1.952114e-06
TCGA-24-0980-01A-01W-0421-09	42	39	3	33	7.142857e-02	1	exome+100bp flanks	34834024	6	29	1.722454e-07	8.325194e-07
TCGA-24-0982-01A-01W-0488-09	56	55	1	37	1.785714e-02	0	coding only	34834024	16	33	4.593210e-07	9.473496e-07
TCGA-24-1103-01A-01W-0488-09	84	80	4	56	4.761905e-02	1	exome+100bp flanks	34834024	21	54	6.028589e-07	1.550208e-06
TCGA-24-1104-01A-01W-0488-09	68	63	5	46	7.352941e-02	1	exome+100bp flanks	34834024	16	45	4.593210e-07	1.291840e-06
TCGA-24-1105-01A-01W-0484-10	21	21	0	18	0	1	exome+100bp flanks	34834024	3	18	8.612269e-08	5.167362e-07
TCGA-24-1413-01A-01W-0494-09	43	41	2	35	4.651163e-02	1	exome+100bp flanks	34834024	6	31	1.722454e-07	8.899345e-07
TCGA-24-1416-01A-01W-0549-09	17	16	1	12	5.882353e-02	1	exome+100bp flanks	34834024	4	12	1.148303e-07	3.444908e-07
TCGA-24-1417-01A-01W-0549-09	60	60	0	42	0	0	coding only	34834024	18	41	5.167362e-07	1.177010e-06
TCGA-24-1418-01A-01W-0549-09	47	46	1	38	2.127660e-02	1	exome+100bp flanks	34834024	8	36	2.296605e-07	1.033472e-06
TCGA-24-1419-01A-01W-0545-08	30	30	0	27	0	1	exome+100bp flanks	34834024	3	27	8.612269e-08	7.751042e-07
TCGA-24-1422-01A-01W-0545-08	85	85	0	65	0	0	coding only	34834024	20	62	5.741513e-07	1.779869e-06
TCGA-24-1423-01A-01W-0545-08	56	56	0	49	0	0	coding only	34834024	6	48	1.722454e-07	1.377963e-06
TCGA-24-1424-01A-01W-0549-09	54	52	2	41	3.703704e-02	1	exome+100bp flanks	34834024	11	37	3.157832e-07	1.062180e-06
TCGA-24-1425-01A-02W-0553-09	33	31	2	25	6.060606e-02	1	exome+100bp flanks	34834024	6	25	1.722454e-07	7.176891e-07
TCGA-24-1426-01A-01W-0549-09	33	32	1	20	3.030303e-02	1	exome+100bp flanks	34834024	12	19	3.444908e-07	5.454437e-07
TCGA-24-1427-01A-01W-0549-09	61	59	2	46	3.278689e-02	1	exome+100bp flanks	34834024	12	46	3.444908e-07	1.320548e-06
TCGA-24-1428-01A-01W-0549-09	16	16	0	13	0	1	exome+100bp flanks	34834024	3	12	8.612269e-08	3.444908e-07
TCGA-24-1431-01A-01D-0472-08	32	32	0	25	0	1	exome+100bp flanks	34834024	7	24	2.009530e-07	6.889816e-07
TCGA-24-1434-01A-01W-0545-08	40	40	0	30	0	1	exome+100bp flanks	34834024	10	30	2.870756e-07	8.612269e-07
TCGA-24-1435-01A-01W-0549-09	86	82	4	67	4.651163e-02	1	exome+100bp flanks	34834024	15	66	4.306135e-07	1.894699e-06
TCGA-24-1436-01A-01W-0549-09	50	48	2	34	4.000000e-02	1	exome+100bp flanks	34834024	14	34	4.019059e-07	9.760572e-07
TCGA-24-1463-01A-01W-0549-09	69	67	2	57	2.898551e-02	0	coding only	34834024	10	54	2.870756e-07	1.550208e-06
TCGA-24-1464-01A-01W-0549-09	64	61	3	42	4.687500e-02	1	exome+100bp flanks	34834024	16	41	4.593210e-07	1.177010e-06
TCGA-24-1466-01A-01W-0545-08	47	47	0	39	0	1	exome+100bp flanks	34834024	8	38	2.296605e-07	1.090887e-06
TCGA-24-1469-01A-01W-0553-09	166	161	5	121	3.012048e-02	1	exome+100bp flanks	34834024	38	113	1.090887e-06	3.243955e-06
TCGA-24-1470-01A-01W-0553-09	89	82	7	60	7.865169e-02	1	exome+100bp flanks	34834024	22	59	6.315664e-07	1.693746e-06
TCGA-24-1471-01A-01W-0551-08	23	23	0	19	0	1	exome+100bp flanks	34834024	4	19	1.148303e-07	5.454437e-07
TCGA-24-1474-01A-01W-0551-08	38	38	0	33	0	1	exome+100bp flanks	34834024	5	33	1.435378e-07	9.473496e-07
TCGA-24-1544-01A-01W-0615-10	27	27	0	18	0	1	exome+100bp flanks	34834024	9	18	2.583681e-07	5.167362e-07
TCGA-24-1545-01A-01W-0615-10	20	20	0	18	0	1	exome+100bp flanks	34834024	2	18	5.741513e-08	5.167362e-07
TCGA-24-1546-01A-01W-0615-10	12	12	0	10	0	1	exome+100bp flanks	34834024	2	10	5.741513e-08	2.870756e-07
TCGA-24-1548-01A-01W-0615-10	31	31	0	26	0	1	exome+100bp flanks	34834024	5	26	1.435378e-07	7.463967e-07
TCGA-24-1549-01A-01W-0553-09	43	41	2	35	4.651163e-02	1	exome+100bp flanks	34834024	5	30	1.435378e-07	8.612269e-07
TCGA-24-1551-01A-01W-0551-08	34	34	0	24	0	1	exome+100bp flanks	34834024	10	24	2.870756e-07	6.889816e-07
TCGA-24-1552-01A-01W-0551-08	36	36	0	28	0	1	exome+100bp flanks	34834024	8	28	2.296605e-07	8.038118e-07
TCGA-24-1553-01A-01W-0552-10	33	33	0	29	0	1	exome+100bp flanks	34834024	4	29	1.148303e-07	8.325194e-07
TCGA-24-1555-01A-01W-0552-10	50	50	0	42	0	0	coding only	34834024	8	40	2.296605e-07	1.148303e-06
TCGA-24-1556-01A-01W-0615-10	55	55	0	45	0	0	coding only	34834024	8	43	2.296605e-07	1.234425e-06
TCGA-24-1557-01A-01W-0615-10	48	48	0	41	0	1	exome+100bp flanks	34834024	7	41	2.009530e-07	1.177010e-06
TCGA-24-1558-01A-01W-0615-10	26	26	0	20	0	1	exome+100bp flanks	34834024	6	20	1.722454e-07	5.741513e-07
TCGA-24-1560-01A-01W-0615-10	29	29	0	22	0	1	exome+100bp flanks	34834024	6	22	1.722454e-07	6.315664e-07
TCGA-24-1562-01A-01W-0553-09	32	31	1	25	3.125000e-02	1	exome+100bp flanks	34834024	5	23	1.435378e-07	6.602740e-07
TCGA-24-1563-01A-01W-0553-09	75	72	3	53	4.000000e-02	1	exome+100bp flanks	34834024	19	52	5.454437e-07	1.492793e-06
TCGA-24-1564-01A-01W-0551-08	34	34	0	26	0	1	exome+100bp flanks	34834024	8	25	2.296605e-07	7.176891e-07
TCGA-24-1565-01A-01W-0551-08	31	31	0	23	0	1	exome+100bp flanks	34834024	8	23	2.296605e-07	6.602740e-07
TCGA-24-1567-01A-01W-0615-10	51	51	0	41	0	0	coding only	34834024	10	39	2.870756e-07	1.119595e-06
TCGA-24-1603-01A-01W-0551-08	25	25	0	22	0	1	exome+100bp flanks	34834024	3	22	8.612269e-08	6.315664e-07
TCGA-24-1604-01A-01W-0552-10	65	65	0	50	0	0	coding only	34834024	15	48	4.306135e-07	1.377963e-06
TCGA-24-1614-01A-01W-0552-10	39	39	0	31	0	1	exome+100bp flanks	34834024	8	31	2.296605e-07	8.899345e-07
TCGA-24-1616-01A-01W-0553-09	64	62	2	52	3.125000e-02	1	exome+100bp flanks	34834024	9	49	2.583681e-07	1.406671e-06
TCGA-24-1842-01A-01W-0639-09	42	40	2	30	4.761905e-02	1	exome+100bp flanks	34834024	9	28	2.583681e-07	8.038118e-07
TCGA-24-1843-01A-01W-0639-09	93	89	4	69	4.301075e-02	1	exome+100bp flanks	34834024	18	63	5.167362e-07	1.808577e-06
TCGA-24-1844-01A-01W-0639-09	161	150	11	125	6.832298e-02	1	exome+100bp flanks	34834024	23	117	6.602740e-07	3.358785e-06
TCGA-24-1845-01A-01W-0639-09	154	150	4	119	2.597403e-02	0	coding only	34834024	27	108	7.751042e-07	3.100417e-06
TCGA-24-1846-01A-01W-0639-09	118	112	6	89	5.084746e-02	1	exome+100bp flanks	34834024	21	78	6.028589e-07	2.239190e-06
TCGA-24-1847-01A-01W-0633-09	89	84	5	67	5.617978e-02	1	exome+100bp flanks	34834024	16	63	4.593210e-07	1.808577e-06
TCGA-24-1849-01A-01W-0639-09	106	99	7	81	6.603774e-02	1	exome+100bp flanks	34834024	18	72	5.167362e-07	2.066945e-06
TCGA-24-1850-01A-01W-0639-09	85	80	5	60	5.882353e-02	1	exome+100bp flanks	34834024	18	56	5.167362e-07	1.607624e-06
TCGA-24-2019-01A-02W-0722-08	32	32	0	23	0	1	exome+100bp flanks	34834024	9	23	2.583681e-07	6.602740e-07
TCGA-24-2024-01A-02W-0722-08	79	79	0	64	0	0	coding only	34834024	15	64	4.306135e-07	1.837284e-06
TCGA-24-2030-01A-01W-0722-08	49	49	0	38	0	1	exome+100bp flanks	34834024	11	38	3.157832e-07	1.090887e-06
TCGA-24-2035-01A-01W-0722-08	65	65	0	53	0	0	coding only	34834024	12	53	3.444908e-07	1.521501e-06
TCGA-24-2038-01A-01W-0722-08	10	10	0	9	0	1	exome+100bp flanks	34834024	1	9	2.870756e-08	2.583681e-07
TCGA-24-2254-01A-01W-0722-08	45	45	0	32	0	1	exome+100bp flanks	34834024	13	32	3.731983e-07	9.186421e-07
TCGA-24-2260-01A-01W-0722-08	43	43	0	33	0	1	exome+100bp flanks	34834024	9	32	2.583681e-07	9.186421e-07
TCGA-24-2261-01A-01W-0722-08	38	38	0	25	0	1	exome+100bp flanks	34834024	13	25	3.731983e-07	7.176891e-07
TCGA-24-2262-01A-01W-0799-08	48	48	0	31	0	1	exome+100bp flanks	34834024	17	31	4.880286e-07	8.899345e-07
TCGA-24-2267-01A-01W-0799-08	96	96	0	73	0	0	coding only	34834024	23	73	6.602740e-07	2.095652e-06
TCGA-24-2271-01A-01W-0799-08	20	20	0	15	0	1	exome+100bp flanks	34834024	5	15	1.435378e-07	4.306135e-07
TCGA-24-2280-01A-01W-0799-08	5	5	0	3	0	1	exome+100bp flanks	34834024	2	3	5.741513e-08	8.612269e-08
TCGA-24-2281-01A-01W-0799-08	35	35	0	28	0	1	exome+100bp flanks	34834024	7	28	2.009530e-07	8.038118e-07
TCGA-24-2288-01A-01W-0799-08	4	4	0	3	0	1	exome+100bp flanks	34834024	1	3	2.870756e-08	8.612269e-08
TCGA-24-2289-01A-01W-0799-08	4	4	0	4	0	1	exome+100bp flanks	34834024	0	4	0	1.148303e-07
TCGA-24-2290-01A-01W-0799-08	58	58	0	39	0	0	coding only	34834024	19	39	5.454437e-07	1.119595e-06
TCGA-24-2293-01A-01W-0799-08	37	37	0	30	0	1	exome+100bp flanks	34834024	7	29	2.009530e-07	8.325194e-07
TCGA-24-2298-01A-01W-0799-08	51	51	0	44	0	0	coding only	34834024	7	44	2.009530e-07	1.263133e-06
TCGA-25-1313-01A-01W-0492-08	104	104	0	80	0	0	coding only	34834024	23	79	6.602740e-07	2.267898e-06
TCGA-25-1315-01A-01W-0494-09	59	56	3	47	5.084746e-02	1	exome+100bp flanks	34834024	8	42	2.296605e-07	1.205718e-06
TCGA-25-1316-01A-01W-0494-09	21	21	0	14	0	1	exome+100bp flanks	34834024	7	13	2.009530e-07	3.731983e-07
TCGA-25-1317-01A-01W-0490-10	44	44	0	39	0	1	exome+100bp flanks	34834024	5	39	1.435378e-07	1.119595e-06
TCGA-25-1318-01A-01W-0490-10	58	58	0	45	0	0	coding only	34834024	13	45	3.731983e-07	1.291840e-06
TCGA-25-1319-01A-01W-0492-08	53	53	0	44	0	0	coding only	34834024	9	44	2.583681e-07	1.263133e-06
TCGA-25-1320-01A-01W-0492-08	32	32	0	22	0	1	exome+100bp flanks	34834024	10	22	2.870756e-07	6.315664e-07
TCGA-25-1321-01A-01W-0492-08	35	35	0	27	0	1	exome+100bp flanks	34834024	8	26	2.296605e-07	7.463967e-07
TCGA-25-1322-01A-01W-0494-09	48	44	4	31	8.333333e-02	1	exome+100bp flanks	34834024	13	30	3.731983e-07	8.612269e-07
TCGA-25-1324-01A-01W-0490-10	42	42	0	38	0	1	exome+100bp flanks	34834024	4	37	1.148303e-07	1.062180e-06
TCGA-25-1325-01A-01W-0490-10	30	30	0	30	0	1	exome+100bp flanks	34834024	0	30	0	8.612269e-07
TCGA-25-1326-01A-01W-0492-08	110	110	0	90	0	0	coding only	34834024	20	89	5.741513e-07	2.554973e-06
TCGA-25-1328-01A-01W-0492-08	9	9	0	8	0	1	exome+100bp flanks	34834024	1	8	2.870756e-08	2.296605e-07
TCGA-25-1329-01A-01W-0492-08	35	35	0	28	0	1	exome+100bp flanks	34834024	7	28	2.009530e-07	8.038118e-07
TCGA-25-1623-01A-01W-0615-10	11	11	0	10	0	1	exome+100bp flanks	34834024	1	10	2.870756e-08	2.870756e-07
TCGA-25-1625-01A-01W-0615-10	35	35	0	30	0	1	exome+100bp flanks	34834024	5	30	1.435378e-07	8.612269e-07
TCGA-25-1626-01A-01W-0615-10	9	9	0	6	0	1	exome+100bp flanks	34834024	3	6	8.612269e-08	1.722454e-07
TCGA-25-1627-01A-01W-0615-10	31	31	0	25	0	1	exome+100bp flanks	34834024	6	23	1.722454e-07	6.602740e-07
TCGA-25-1628-01A-01W-0615-10	24	24	0	16	0	1	exome+100bp flanks	34834024	8	16	2.296605e-07	4.593210e-07
TCGA-25-1630-01A-01W-0615-10	46	46	0	36	0	1	exome+100bp flanks	34834024	10	35	2.870756e-07	1.004765e-06
TCGA-25-1631-01A-01W-0615-10	27	27	0	21	0	1	exome+100bp flanks	34834024	6	21	1.722454e-07	6.028589e-07
TCGA-25-1632-01A-01W-0615-10	47	47	0	37	0	1	exome+100bp flanks	34834024	10	34	2.870756e-07	9.760572e-07
TCGA-25-1633-01A-01W-0615-10	14	14	0	10	0	1	exome+100bp flanks	34834024	4	10	1.148303e-07	2.870756e-07
TCGA-25-1634-01A-01W-0615-10	26	26	0	21	0	1	exome+100bp flanks	34834024	5	21	1.435378e-07	6.028589e-07
TCGA-25-1635-01A-01W-0615-10	18	18	0	17	0	1	exome+100bp flanks	34834024	1	17	2.870756e-08	4.880286e-07
TCGA-25-2042-01A-01W-0799-08	43	43	0	32	0	1	exome+100bp flanks	34834024	11	32	3.157832e-07	9.186421e-07
TCGA-25-2391-01A-01W-0799-08	1	1	0	1	0	1	exome+100bp flanks	34834024	0	1	0	2.870756e-08
TCGA-25-2392-01A-01W-0799-08	85	85	0	65	0	0	coding only	34834024	20	63	5.741513e-07	1.808577e-06
TCGA-25-2393-01A-01W-0799-08	49	49	0	41	0	1	exome+100bp flanks	34834024	8	41	2.296605e-07	1.177010e-06
TCGA-25-2396-01A-01W-0799-08	23	23	0	16	0	1	exome+100bp flanks	34834024	7	16	2.009530e-07	4.593210e-07
TCGA-25-2398-01A-01W-0799-08	37	37	0	23	0	1	exome+100bp flanks	34834024	14	23	4.019059e-07	6.602740e-07
TCGA-25-2399-01A-01W-0799-08	37	37	0	28	0	1	exome+100bp flanks	34834024	9	28	2.583681e-07	8.038118e-07
TCGA-25-2400-01A-01W-0799-08	48	48	0	38	0	1	exome+100bp flanks	34834024	10	38	2.870756e-07	1.090887e-06
TCGA-25-2401-01A-01W-0799-08	56	56	0	46	0	0	coding only	34834024	10	46	2.870756e-07	1.320548e-06
TCGA-25-2404-01A-01W-0799-08	37	37	0	30	0	1	exome+100bp flanks	34834024	7	29	2.009530e-07	8.325194e-07
TCGA-25-2408-01A-01W-0799-08	10	10	0	7	0	1	exome+100bp flanks	34834024	3	7	8.612269e-08	2.009530e-07
TCGA-25-2409-01A-01W-0799-08	22	22	0	17	0	1	exome+100bp flanks	34834024	5	17	1.435378e-07	4.880286e-07
TCGA-29-1688-01A-01W-0633-09	56	49	7	40	1.250000e-01	1	exome+100bp flanks	34834024	9	36	2.583681e-07	1.033472e-06
TCGA-29-1690-01A-01W-0633-09	68	58	10	40	1.470588e-01	1	exome+100bp flanks	34834024	15	35	4.306135e-07	1.004765e-06
TCGA-29-1691-01A-01W-0633-09	192	187	5	147	2.604167e-02	0	coding only	34834024	35	138	1.004765e-06	3.961644e-06
TCGA-29-1693-01A-01W-0633-09	108	105	3	79	2.777778e-02	0	coding only	34834024	24	71	6.889816e-07	2.038237e-06
TCGA-29-1694-01A-01W-0633-09	39	36	3	28	7.692308e-02	1	exome+100bp flanks	34834024	8	25	2.296605e-07	7.176891e-07
TCGA-29-1695-01A-01W-0633-09	81	78	3	57	3.703704e-02	1	exome+100bp flanks	34834024	18	46	5.167362e-07	1.320548e-06
TCGA-29-1696-01A-01W-0633-09	61	57	4	44	6.557377e-02	1	exome+100bp flanks	34834024	11	39	3.157832e-07	1.119595e-06
TCGA-29-1697-01A-01W-0633-09	52	46	6	32	1.153846e-01	1	exome+100bp flanks	34834024	11	31	3.157832e-07	8.899345e-07
TCGA-29-1698-01A-01W-0633-09	73	68	5	50	6.849315e-02	1	exome+100bp flanks	34834024	15	46	4.306135e-07	1.320548e-06
TCGA-29-1699-01A-01W-0633-09	88	77	11	61	1.250000e-01	1	exome+100bp flanks	34834024	15	59	4.306135e-07	1.693746e-06
TCGA-29-1701-01A-01W-0633-09	59	56	3	42	5.084746e-02	1	exome+100bp flanks	34834024	11	33	3.157832e-07	9.473496e-07
TCGA-29-1702-01A-01W-0633-09	79	71	8	52	1.012658e-01	1	exome+100bp flanks	34834024	18	42	5.167362e-07	1.205718e-06
TCGA-29-1703-01A-01W-0633-09	94	87	7	68	7.446809e-02	1	exome+100bp flanks	34834024	19	56	5.454437e-07	1.607624e-06
TCGA-29-1705-01A-01W-0633-09	54	54	0	36	0	0	coding only	34834024	18	32	5.167362e-07	9.186421e-07
TCGA-29-1707-01A-01W-0633-09	51	47	4	35	7.843137e-02	1	exome+100bp flanks	34834024	12	33	3.444908e-07	9.473496e-07
TCGA-29-1710-01A-02W-0633-09	44	40	4	28	9.090909e-02	1	exome+100bp flanks	34834024	12	27	3.444908e-07	7.751042e-07
TCGA-29-1711-01A-01W-0633-09	72	66	6	53	8.333333e-02	1	exome+100bp flanks	34834024	10	46	2.870756e-07	1.320548e-06
TCGA-29-1761-01A-01W-0633-09	192	180	12	138	6.250000e-02	1	exome+100bp flanks	34834024	38	127	1.090887e-06	3.645861e-06
TCGA-29-1762-01A-01W-0633-09	80	72	8	58	1.000000e-01	1	exome+100bp flanks	34834024	11	55	3.157832e-07	1.578916e-06
TCGA-29-1763-01A-02W-0633-09	126	119	7	83	5.555556e-02	1	exome+100bp flanks	34834024	34	78	9.760572e-07	2.239190e-06
TCGA-29-1764-01A-01W-0633-09	86	80	6	61	6.976744e-02	1	exome+100bp flanks	34834024	19	59	5.454437e-07	1.693746e-06
TCGA-29-1766-01A-01W-0633-09	68	64	4	48	5.882353e-02	1	exome+100bp flanks	34834024	16	46	4.593210e-07	1.320548e-06
TCGA-29-1768-01A-01W-0633-09	68	60	8	45	1.176471e-01	1	exome+100bp flanks	34834024	13	41	3.731983e-07	1.177010e-06
TCGA-29-1769-01A-01W-0639-09	80	77	3	61	3.750000e-02	1	exome+100bp flanks	34834024	14	60	4.019059e-07	1.722454e-06
TCGA-29-1770-01A-01W-0633-09	100	90	10	71	1.000000e-01	1	exome+100bp flanks	34834024	19	68	5.454437e-07	1.952114e-06
TCGA-29-1771-01A-01W-0633-09	22	19	3	16	1.363636e-01	1	exome+100bp flanks	34834024	2	14	5.741513e-08	4.019059e-07
TCGA-29-1774-01A-01W-0639-09	48	48	0	36	0	1	exome+100bp flanks	34834024	11	30	3.157832e-07	8.612269e-07
TCGA-29-1775-01A-01W-0639-09	133	125	8	94	6.015038e-02	1	exome+100bp flanks	34834024	30	79	8.612269e-07	2.267898e-06
TCGA-29-1776-01A-01W-0639-09	58	56	2	48	3.448276e-02	1	exome+100bp flanks	34834024	7	45	2.009530e-07	1.291840e-06
TCGA-29-1777-01A-01W-0639-09	141	133	8	103	5.673759e-02	1	exome+100bp flanks	34834024	28	95	8.038118e-07	2.727219e-06
TCGA-29-1778-01A-01W-0639-09	47	43	4	26	8.510638e-02	1	exome+100bp flanks	34834024	17	25	4.880286e-07	7.176891e-07
TCGA-29-1781-01A-01W-0633-09	113	103	10	85	8.849558e-02	1	exome+100bp flanks	34834024	17	79	4.880286e-07	2.267898e-06
TCGA-29-1783-01A-01W-0633-09	67	64	3	53	4.477612e-02	1	exome+100bp flanks	34834024	11	51	3.157832e-07	1.464086e-06
TCGA-29-1784-01A-02W-0633-09	112	106	6	88	5.357143e-02	1	exome+100bp flanks	34834024	17	82	4.880286e-07	2.354020e-06
TCGA-29-1785-01A-01W-0633-09	82	77	5	58	6.097561e-02	1	exome+100bp flanks	34834024	19	55	5.454437e-07	1.578916e-06
TCGA-29-2427-01A-01W-0799-08	56	56	0	40	0	0	coding only	34834024	16	40	4.593210e-07	1.148303e-06
TCGA-29-2429-01A-01D-1526-09	86	83	3	60	3.488372e-02	1	exome+100bp flanks	34834024	22	58	6.315664e-07	1.665039e-06
TCGA-29-2431-01A-01D-1526-09	34	34	0	26	0	1	exome+100bp flanks	34834024	7	26	2.009530e-07	7.463967e-07
TCGA-29-2432-01A-01D-1526-09	95	90	5	64	5.263158e-02	1	exome+100bp flanks	34834024	24	63	6.889816e-07	1.808577e-06
TCGA-29-2434-01A-01D-1526-09	117	109	8	85	6.837607e-02	1	exome+100bp flanks	34834024	24	84	6.889816e-07	2.411435e-06
TCGA-29-2436-01A-01D-1526-09	11	10	1	6	9.090909e-02	1	exome+100bp flanks	34834024	4	4	1.148303e-07	1.148303e-07
TCGA-30-1714-01A-02W-0633-09	83	76	7	65	8.433735e-02	1	exome+100bp flanks	34834024	11	60	3.157832e-07	1.722454e-06
TCGA-30-1718-01A-01W-0633-09	126	122	4	93	3.174603e-02	1	exome+100bp flanks	34834024	28	87	8.038118e-07	2.497558e-06
TCGA-30-1853-01A-02W-0699-08	35	35	0	25	0	1	exome+100bp flanks	34834024	10	25	2.870756e-07	7.176891e-07
TCGA-30-1855-01A-01W-0639-09	123	111	12	80	9.756098e-02	1	exome+100bp flanks	34834024	30	76	8.612269e-07	2.181775e-06
TCGA-30-1856-01A-01W-0639-09	70	66	4	54	5.714286e-02	1	exome+100bp flanks	34834024	12	48	3.444908e-07	1.377963e-06
TCGA-30-1857-01A-02W-0639-09	94	86	8	68	8.510638e-02	1	exome+100bp flanks	34834024	16	62	4.593210e-07	1.779869e-06
TCGA-30-1862-01	38	38	0	32	0	1	exome+100bp flanks	34834024	6	32	1.722454e-07	9.186421e-07
TCGA-30-1862-01A-02W-0699-08	38	38	0	32	0	1	exome+100bp flanks	34834024	6	32	1.722454e-07	9.186421e-07
TCGA-30-1891-01	69	69	0	52	0	0	coding only	34834024	17	52	4.880286e-07	1.492793e-06
TCGA-30-1891-01A-01W-0699-08	69	69	0	52	0	0	coding only	34834024	17	52	4.880286e-07	1.492793e-06
TCGA-31-1950-01A-01W-0699-08	21	21	0	18	0	1	exome+100bp flanks	34834024	3	18	8.612269e-08	5.167362e-07
TCGA-31-1953-01	38	38	0	34	0	1	exome+100bp flanks	34834024	4	34	1.148303e-07	9.760572e-07
TCGA-31-1953-01A-01W-0699-08	38	38	0	34	0	1	exome+100bp flanks	34834024	4	34	1.148303e-07	9.760572e-07
TCGA-31-1959-01	54	54	0	39	0	0	coding only	34834024	15	39	4.306135e-07	1.119595e-06
TCGA-31-1959-01A-01W-0699-08	54	54	0	39	0	0	coding only	34834024	15	39	4.306135e-07	1.119595e-06
TCGA-36-1568-01A-01W-0615-10	44	44	0	35	0	1	exome+100bp flanks	34834024	9	35	2.583681e-07	1.004765e-06
TCGA-36-1569-01A-01W-0615-10	10	10	0	8	0	1	exome+100bp flanks	34834024	2	8	5.741513e-08	2.296605e-07
TCGA-36-1570-01A-01W-0615-10	30	30	0	22	0	1	exome+100bp flanks	34834024	8	22	2.296605e-07	6.315664e-07
TCGA-36-1571-01A-01W-0615-10	13	13	0	8	0	1	exome+100bp flanks	34834024	5	8	1.435378e-07	2.296605e-07
TCGA-36-1574-01A-01W-0615-10	19	19	0	17	0	1	exome+100bp flanks	34834024	2	17	5.741513e-08	4.880286e-07
TCGA-36-1575-01A-01W-0615-10	34	34	0	30	0	1	exome+100bp flanks	34834024	4	30	1.148303e-07	8.612269e-07
TCGA-36-1576-01A-01W-0615-10	17	17	0	13	0	1	exome+100bp flanks	34834024	4	13	1.148303e-07	3.731983e-07
TCGA-36-1577-01A-01W-0615-10	62	62	0	58	0	0	coding only	34834024	4	58	1.148303e-07	1.665039e-06
TCGA-36-1578-01A-01W-0615-10	57	57	0	47	0	0	coding only	34834024	10	47	2.870756e-07	1.349256e-06
TCGA-36-1580-01A-01W-0615-10	14	14	0	14	0	1	exome+100bp flanks	34834024	0	14	0	4.019059e-07
TCGA-36-2530-01A-01D-1526-09	83	78	5	62	6.024096e-02	1	exome+100bp flanks	34834024	15	57	4.306135e-07	1.636331e-06
TCGA-36-2532-01A-01D-1526-09	47	44	3	34	6.382979e-02	1	exome+100bp flanks	34834024	10	32	2.870756e-07	9.186421e-07
TCGA-36-2533-01A-01D-1526-09	82	80	2	64	2.439024e-02	0	coding only	34834024	15	61	4.306135e-07	1.751161e-06
TCGA-36-2534-01A-01D-1526-09	132	126	6	98	4.545455e-02	1	exome+100bp flanks	34834024	26	96	7.463967e-07	2.755926e-06
TCGA-36-2537-01A-01D-1526-09	49	49	0	31	0	1	exome+100bp flanks	34834024	17	25	4.880286e-07	7.176891e-07
TCGA-36-2538-01A-01D-1526-09	50	47	3	37	6.000000e-02	1	exome+100bp flanks	34834024	9	37	2.583681e-07	1.062180e-06
TCGA-36-2539-01A-01D-1526-09	71	68	3	49	4.225352e-02	1	exome+100bp flanks	34834024	16	45	4.593210e-07	1.291840e-06
TCGA-36-2540-01A-01D-1526-09	8	7	1	5	1.250000e-01	1	exome+100bp flanks	34834024	2	5	5.741513e-08	1.435378e-07
TCGA-36-2542-01A-01D-1526-09	74	74	0	58	0	0	coding only	34834024	15	55	4.306135e-07	1.578916e-06
TCGA-36-2543-01A-01D-1526-09	74	69	5	53	6.756757e-02	1	exome+100bp flanks	34834024	14	51	4.019059e-07	1.464086e-06
TCGA-36-2544-01A-01D-1526-09	73	68	5	55	6.849315e-02	1	exome+100bp flanks	34834024	12	51	3.444908e-07	1.464086e-06
TCGA-36-2545-01A-01D-1526-09	72	67	5	51	6.944444e-02	1	exome+100bp flanks	34834024	14	45	4.019059e-07	1.291840e-06
TCGA-36-2547-01A-01D-1526-09	147	144	3	115	2.040816e-02	0	coding only	34834024	27	111	7.751042e-07	3.186540e-06
TCGA-36-2548-01A-01D-1526-09	52	50	2	39	3.846154e-02	1	exome+100bp flanks	34834024	9	37	2.583681e-07	1.062180e-06
TCGA-36-2551-01A-01D-1526-09	38	33	5	20	1.315789e-01	1	exome+100bp flanks	34834024	13	18	3.731983e-07	5.167362e-07
TCGA-36-2552-01A-01D-1526-09	72	69	3	47	4.166667e-02	1	exome+100bp flanks	34834024	20	46	5.741513e-07	1.320548e-06
TCGA-42-2582-01A-01D-1526-09	88	85	3	74	3.409091e-02	1	exome+100bp flanks	34834024	9	70	2.583681e-07	2.009530e-06
TCGA-42-2587-01A-01D-1526-09	143	135	8	108	5.594406e-02	1	exome+100bp flanks	34834024	24	103	6.889816e-07	2.956879e-06
TCGA-42-2588-01A-01D-1526-09	38	34	4	26	1.052632e-01	1	exome+100bp flanks	34834024	8	24	2.296605e-07	6.889816e-07
TCGA-42-2589-01A-01D-1526-09	88	81	7	67	7.954545e-02	1	exome+100bp flanks	34834024	14	65	4.019059e-07	1.865992e-06
TCGA-42-2590-01A-01D-1526-09	59	55	4	45	6.779661e-02	1	exome+100bp flanks	34834024	9	41	2.583681e-07	1.177010e-06
TCGA-42-2591-01A-01D-1526-09	77	72	5	52	6.493506e-02	1	exome+100bp flanks	34834024	18	49	5.167362e-07	1.406671e-06
TCGA-57-1582-01A-01W-0615-10	69	69	0	46	0	0	coding only	34834024	23	43	6.602740e-07	1.234425e-06
TCGA-57-1583-01A-01W-0615-10	9	9	0	8	0	1	exome+100bp flanks	34834024	1	8	2.870756e-08	2.296605e-07
TCGA-57-1584-01A-01W-0615-10	31	31	0	26	0	1	exome+100bp flanks	34834024	5	26	1.435378e-07	7.463967e-07
TCGA-57-1586-01A-02W-0633-09	28	22	6	17	2.142857e-01	1	exome+100bp flanks	34834024	2	14	5.741513e-08	4.019059e-07
TCGA-57-1993-01A-01W-0699-08	45	45	0	33	0	1	exome+100bp flanks	34834024	11	33	3.157832e-07	9.473496e-07
TCGA-59-2348-01A-01W-0799-08	72	72	0	52	0	0	coding only	34834024	20	51	5.741513e-07	1.464086e-06
TCGA-59-2350-01A-01W-0799-08	8	8	0	6	0	1	exome+100bp flanks	34834024	2	6	5.741513e-08	1.722454e-07
TCGA-59-2351-01A-01W-0799-08	76	76	0	55	0	0	coding only	34834024	20	54	5.741513e-07	1.550208e-06
TCGA-59-2352-01A-01W-0799-08	74	74	0	56	0	0	coding only	34834024	18	55	5.167362e-07	1.578916e-06
TCGA-59-2354-01A-01W-0799-08	51	51	0	33	0	0	coding only	34834024	18	33	5.167362e-07	9.473496e-07
TCGA-59-2355-01A-01W-0799-08	20	20	0	17	0	1	exome+100bp flanks	34834024	3	17	8.612269e-08	4.880286e-07
TCGA-59-2363-01A-01W-0799-08	78	78	0	58	0	0	coding only	34834024	20	57	5.741513e-07	1.636331e-06
TCGA-59-2372-01A-01D-1526-09	93	88	5	70	5.376344e-02	1	exome+100bp flanks	34834024	17	67	4.880286e-07	1.923407e-06
TCGA-61-1722-01A-01D-1556-09	76	72	4	51	5.263158e-02	1	exome+100bp flanks	34834024	17	49	4.880286e-07	1.406671e-06
TCGA-61-1725-01A-01W-0639-09	61	57	4	49	6.557377e-02	1	exome+100bp flanks	34834024	7	45	2.009530e-07	1.291840e-06
TCGA-61-1727-01A-01W-0639-09	142	135	7	111	4.929577e-02	1	exome+100bp flanks	34834024	23	106	6.602740e-07	3.043002e-06
TCGA-61-1728-01A-01W-0699-08	13	13	0	7	0	1	exome+100bp flanks	34834024	6	7	1.722454e-07	2.009530e-07
TCGA-61-1730-01A-01W-0639-09	56	52	4	41	7.142857e-02	1	exome+100bp flanks	34834024	10	38	2.870756e-07	1.090887e-06
TCGA-61-1733-01A-01W-0639-09	57	57	0	40	0	0	coding only	34834024	16	38	4.593210e-07	1.090887e-06
TCGA-61-1736-01B-01W-0722-08	24	24	0	17	0	1	exome+100bp flanks	34834024	7	17	2.009530e-07	4.880286e-07
TCGA-61-1737-01A-01W-0639-09	90	82	8	66	8.888889e-02	1	exome+100bp flanks	34834024	15	65	4.306135e-07	1.865992e-06
TCGA-61-1738-01A-01W-0639-09	68	62	6	43	8.823529e-02	1	exome+100bp flanks	34834024	16	42	4.593210e-07	1.205718e-06
TCGA-61-1740-01A-01W-0639-09	200	190	10	139	5.000000e-02	1	exome+100bp flanks	34834024	50	127	1.435378e-06	3.645861e-06
TCGA-61-1741-01A-02W-0639-09	43	41	2	30	4.651163e-02	1	exome+100bp flanks	34834024	10	27	2.870756e-07	7.751042e-07
TCGA-61-1895-01A-01W-0639-09	66	62	4	54	6.060606e-02	1	exome+100bp flanks	34834024	7	49	2.009530e-07	1.406671e-06
TCGA-61-1899-01A-01W-0639-09	67	60	7	47	1.044776e-01	1	exome+100bp flanks	34834024	13	41	3.731983e-07	1.177010e-06
TCGA-61-1900-01A-01W-0639-09	113	101	12	79	1.061947e-01	1	exome+100bp flanks	34834024	20	69	5.741513e-07	1.980822e-06
TCGA-61-1901-01A-01W-0639-09	66	58	8	42	1.212121e-01	1	exome+100bp flanks	34834024	14	37	4.019059e-07	1.062180e-06
TCGA-61-1903-01A-01W-0639-09	58	55	3	46	5.172414e-02	1	exome+100bp flanks	34834024	6	43	1.722454e-07	1.234425e-06
TCGA-61-1904-01A-01W-0639-09	93	92	1	66	1.075269e-02	0	coding only	34834024	26	63	7.463967e-07	1.808577e-06
TCGA-61-1906-01A-01W-0639-09	59	56	3	43	5.084746e-02	1	exome+100bp flanks	34834024	12	40	3.444908e-07	1.148303e-06
TCGA-61-1907-01A-01W-0639-09	121	117	4	91	3.305785e-02	1	exome+100bp flanks	34834024	24	81	6.889816e-07	2.325313e-06
TCGA-61-1910-01A-01W-0639-09	140	133	7	91	5.000000e-02	1	exome+100bp flanks	34834024	41	83	1.177010e-06	2.382728e-06
TCGA-61-1911-01A-01W-0639-09	40	36	4	26	1.000000e-01	1	exome+100bp flanks	34834024	10	22	2.870756e-07	6.315664e-07
TCGA-61-1913-01A-01W-0639-09	61	58	3	46	4.918033e-02	1	exome+100bp flanks	34834024	12	41	3.444908e-07	1.177010e-06
TCGA-61-1914-01A-01W-0639-09	105	97	8	80	7.619048e-02	1	exome+100bp flanks	34834024	17	72	4.880286e-07	2.066945e-06
TCGA-61-1915-01A-01W-0639-09	102	101	1	72	9.803922e-03	0	coding only	34834024	27	66	7.751042e-07	1.894699e-06
TCGA-61-1919-01	39	39	0	30	0	1	exome+100bp flanks	34834024	9	30	2.583681e-07	8.612269e-07
TCGA-61-1919-01A-01W-0699-08	39	39	0	30	0	1	exome+100bp flanks	34834024	9	30	2.583681e-07	8.612269e-07
TCGA-61-1995-01A-01W-0722-08	19	19	0	16	0	1	exome+100bp flanks	34834024	3	16	8.612269e-08	4.593210e-07
TCGA-61-1998-01A-01W-0722-08	63	63	0	51	0	0	coding only	34834024	12	49	3.444908e-07	1.406671e-06
TCGA-61-2000-01A-01W-0722-08	5	5	0	4	0	1	exome+100bp flanks	34834024	1	4	2.870756e-08	1.148303e-07
TCGA-61-2002-01A-01W-0722-08	39	39	0	31	0	1	exome+100bp flanks	34834024	8	31	2.296605e-07	8.899345e-07
TCGA-61-2003-01A-01W-0722-08	24	24	0	18	0	1	exome+100bp flanks	34834024	6	18	1.722454e-07	5.167362e-07
TCGA-61-2008-01A-02W-0722-08	54	54	0	43	0	0	coding only	34834024	11	42	3.157832e-07	1.205718e-06
TCGA-61-2009-01A-01W-0722-08	61	61	0	52	0	0	coding only	34834024	9	50	2.583681e-07	1.435378e-06
TCGA-61-2012-01A-01W-0722-08	87	87	0	68	0	0	coding only	34834024	19	68	5.454437e-07	1.952114e-06
TCGA-61-2016-01A-01W-0722-08	18	18	0	14	0	1	exome+100bp flanks	34834024	4	14	1.148303e-07	4.019059e-07
TCGA-61-2088-01	19	19	0	15	0	1	exome+100bp flanks	34834024	4	14	1.148303e-07	4.019059e-07
TCGA-61-2088-01A-01W-0722-08	19	18	1	14	5.263158e-02	1	exome+100bp flanks	34834024	4	14	1.148303e-07	4.019059e-07
TCGA-61-2092-01A-01W-0722-08	28	28	0	19	0	1	exome+100bp flanks	34834024	9	19	2.583681e-07	5.454437e-07
TCGA-61-2094-01A-01W-0722-08	1	1	0	1	0	1	exome+100bp flanks	34834024	0	1	0	2.870756e-08
TCGA-61-2095-01A-01W-0722-08	12	12	0	8	0	1	exome+100bp flanks	34834024	4	8	1.148303e-07	2.296605e-07
TCGA-61-2097-01A-02W-0722-08	45	45	0	35	0	1	exome+100bp flanks	34834024	10	35	2.870756e-07	1.004765e-06
TCGA-61-2101-01A-01W-0722-08	34	34	0	21	0	1	exome+100bp flanks	34834024	13	21	3.731983e-07	6.028589e-07
TCGA-61-2102-01A-01W-0722-08	60	60	0	45	0	0	coding only	34834024	15	45	4.306135e-07	1.291840e-06
TCGA-61-2104-01A-01W-0722-08	3	3	0	3	0	1	exome+100bp flanks	34834024	0	3	0	8.612269e-08
TCGA-61-2109-01A-01W-0722-08	1	1	0	0	0	1	exome+100bp flanks	34834024	1	0	2.870756e-08	0
TCGA-61-2110-01A-01W-0722-08	25	25	0	20	0	1	exome+100bp flanks	34834024	5	20	1.435378e-07	5.741513e-07
TCGA-61-2111-01A-01W-0722-08	34	34	0	28	0	1	exome+100bp flanks	34834024	6	28	1.722454e-07	8.038118e-07
TCGA-61-2113-01A-01W-0722-08	38	38	0	25	0	1	exome+100bp flanks	34834024	13	25	3.731983e-07	7.176891e-07
TCGA-61-2612-01A-01W-1092-09	49	47	2	31	4.081633e-02	1	exome+100bp flanks	34834024	15	29	4.306135e-07	8.325194e-07
TCGA-61-2613-01A-01W-1092-09	81	77	4	56	4.938272e-02	1	exome+100bp flanks	34834024	20	55	5.741513e-07	1.578916e-06
TCGA-61-2614-01A-01W-1092-09	57	55	2	44	3.508772e-02	1	exome+100bp flanks	34834024	11	43	3.157832e-07	1.234425e-06