Correlation between gene mutation status and molecular subtypes
Pancreatic Adenocarcinoma (Primary solid tumor)
02 April 2015  |  analyses__2015_04_02
Maintainer Information
Citation Information
doi:10.7908/C1GB234N
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2015): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C1GB234N
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 190 genes and 10 molecular subtypes across 146 patients, 2 significant findings detected with P value < 0.05 and Q value < 0.25.

  • TP53 mutation correlated to 'CN_CNMF'.

  • P2RY1 mutation correlated to 'RPPA_CHIERARCHICAL'.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 190 genes and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 2 significant findings detected.

Clinical
Features 		CN
CNMF 		METHLYATION
CNMF 		RPPA
CNMF 		RPPA
CHIERARCHICAL 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
TP53 100 (68%) 46 7e-05
(0.076) 		0.777
(1.00) 		0.603
(1.00) 		0.393
(1.00) 		0.946
(1.00) 		0.966
(1.00) 		0.767
(1.00) 		0.417
(1.00) 		0.627
(1.00) 		0.716
(1.00)
P2RY1 5 (3%) 141 0.227
(1.00) 		0.294
(1.00) 		0.787
(1.00) 		8e-05
(0.076) 		0.505
(1.00) 		1
(1.00) 		1
(1.00) 		0.333
(1.00) 		0.189
(1.00) 		0.573
(1.00)
KRAS 123 (84%) 23 0.0008
(0.507) 		0.0156
(1.00) 		0.461
(1.00) 		0.197
(1.00) 		0.114
(1.00) 		0.0411
(1.00) 		0.153
(1.00) 		0.0103
(1.00) 		0.198
(1.00) 		0.0944
(1.00)
JMY 55 (38%) 91 0.2
(1.00) 		0.63
(1.00) 		0.432
(1.00) 		0.629
(1.00) 		0.535
(1.00) 		0.91
(1.00) 		0.33
(1.00) 		0.318
(1.00) 		0.419
(1.00) 		0.155
(1.00)
RIOK1 55 (38%) 91 0.158
(1.00) 		0.0749
(1.00) 		0.235
(1.00) 		0.32
(1.00) 		0.115
(1.00) 		0.379
(1.00) 		0.401
(1.00) 		0.234
(1.00) 		0.219
(1.00) 		0.262
(1.00)
LCE2A 46 (32%) 100 0.778
(1.00) 		0.777
(1.00) 		0.293
(1.00) 		0.3
(1.00) 		0.715
(1.00) 		0.531
(1.00) 		0.736
(1.00) 		0.104
(1.00) 		0.871
(1.00) 		0.242
(1.00)
C1QB 35 (24%) 111 0.46
(1.00) 		0.592
(1.00) 		0.288
(1.00) 		0.246
(1.00) 		0.533
(1.00) 		0.79
(1.00) 		0.62
(1.00) 		0.961
(1.00) 		0.877
(1.00) 		0.384
(1.00)
CDKN2A 30 (21%) 116 0.187
(1.00) 		0.0433
(1.00) 		0.537
(1.00) 		0.119
(1.00) 		0.0588
(1.00) 		0.411
(1.00) 		0.578
(1.00) 		0.216
(1.00) 		0.616
(1.00) 		0.108
(1.00)
AEBP1 26 (18%) 120 0.461
(1.00) 		0.804
(1.00) 		0.132
(1.00) 		0.367
(1.00) 		0.261
(1.00) 		0.526
(1.00) 		0.0365
(1.00) 		0.319
(1.00) 		0.336
(1.00) 		0.512
(1.00)
RBM47 25 (17%) 121 0.149
(1.00) 		0.801
(1.00) 		0.376
(1.00) 		0.939
(1.00) 		0.684
(1.00) 		0.905
(1.00) 		0.601
(1.00) 		1
(1.00) 		0.658
(1.00) 		0.913
(1.00)
ANKRD36 24 (16%) 122 0.543
(1.00) 		0.933
(1.00) 		0.202
(1.00) 		0.214
(1.00) 		0.195
(1.00) 		0.209
(1.00) 		0.58
(1.00) 		0.281
(1.00) 		0.671
(1.00) 		0.613
(1.00)
RFX1 24 (16%) 122 0.511
(1.00) 		0.145
(1.00) 		0.251
(1.00) 		0.604
(1.00) 		0.203
(1.00) 		0.48
(1.00) 		0.584
(1.00) 		0.19
(1.00) 		0.0798
(1.00) 		0.229
(1.00)
TYRO3 14 (10%) 132 0.482
(1.00) 		0.507
(1.00) 		0.87
(1.00) 		0.843
(1.00) 		0.0632
(1.00) 		0.78
(1.00) 		0.52
(1.00) 		0.169
(1.00) 		0.667
(1.00) 		0.215
(1.00)
SMAD4 32 (22%) 114 0.0892
(1.00) 		0.486
(1.00) 		0.0868
(1.00) 		0.19
(1.00) 		0.121
(1.00) 		0.0617
(1.00) 		0.435
(1.00) 		0.283
(1.00) 		0.391
(1.00) 		0.185
(1.00)
GPR6 12 (8%) 134 0.356
(1.00) 		0.649
(1.00) 		0.359
(1.00) 		0.00967
(1.00) 		0.296
(1.00) 		0.824
(1.00) 		0.622
(1.00) 		0.689
(1.00) 		0.861
(1.00) 		0.718
(1.00)
LZTS1 10 (7%) 136 0.796
(1.00) 		0.742
(1.00) 		0.456
(1.00) 		0.0031
(1.00) 		0.835
(1.00) 		0.402
(1.00) 		0.38
(1.00) 		0.805
(1.00) 		0.0428
(1.00) 		0.669
(1.00)
NCOA3 14 (10%) 132 0.837
(1.00) 		0.389
(1.00) 		0.541
(1.00) 		0.0301
(1.00) 		0.167
(1.00) 		0.48
(1.00) 		0.781
(1.00) 		0.169
(1.00) 		0.721
(1.00) 		0.201
(1.00)
SIK3 13 (9%) 133 0.287
(1.00) 		0.326
(1.00) 		0.615
(1.00) 		0.956
(1.00) 		0.0715
(1.00) 		0.208
(1.00) 		0.0113
(1.00) 		0.163
(1.00) 		0.23
(1.00) 		0.153
(1.00)
ZMIZ2 12 (8%) 134 0.686
(1.00) 		0.555
(1.00) 		0.498
(1.00) 		0.523
(1.00) 		0.581
(1.00) 		0.822
(1.00) 		0.707
(1.00) 		0.755
(1.00) 		0.364
(1.00) 		0.846
(1.00)
IRS4 16 (11%) 130 0.737
(1.00) 		0.189
(1.00) 		0.263
(1.00) 		0.123
(1.00) 		0.778
(1.00) 		1
(1.00) 		0.614
(1.00) 		0.35
(1.00) 		1
(1.00) 		0.596
(1.00)
ESPN 6 (4%) 140 0.83
(1.00) 		0.851
(1.00) 		0.652
(1.00) 		0.48
(1.00) 		0.937
(1.00) 		0.842
(1.00) 		0.224
(1.00) 		1
(1.00)
ATP2C1 8 (5%) 138 0.335
(1.00) 		0.773
(1.00) 		0.0482
(1.00) 		0.0724
(1.00) 		0.359
(1.00) 		0.883
(1.00) 		0.953
(1.00) 		0.682
(1.00) 		0.371
(1.00) 		0.327
(1.00)
FNDC1 14 (10%) 132 0.773
(1.00) 		0.666
(1.00) 		0.487
(1.00) 		0.622
(1.00) 		0.357
(1.00) 		1
(1.00) 		0.0674
(1.00) 		0.85
(1.00) 		0.216
(1.00) 		0.863
(1.00)
TMEM91 6 (4%) 140 0.497
(1.00) 		0.945
(1.00) 		0.151
(1.00) 		0.296
(1.00) 		0.562
(1.00) 		0.37
(1.00) 		0.0814
(1.00) 		0.846
(1.00) 		0.498
(1.00) 		0.118
(1.00)
SHROOM4 11 (8%) 135 0.474
(1.00) 		0.605
(1.00) 		0.0329
(1.00) 		0.368
(1.00) 		0.189
(1.00) 		0.0248
(1.00) 		0.217
(1.00) 		0.144
(1.00) 		0.13
(1.00) 		0.0134
(1.00)
PABPC1 9 (6%) 137 0.151
(1.00) 		0.695
(1.00) 		0.922
(1.00) 		0.903
(1.00) 		0.263
(1.00) 		0.887
(1.00) 		0.96
(1.00) 		0.881
(1.00) 		0.3
(1.00) 		0.168
(1.00)
OGFOD1 5 (3%) 141 1
(1.00) 		0.573
(1.00) 		0.202
(1.00) 		0.636
(1.00) 		0.0813
(1.00) 		0.134
(1.00) 		0.295
(1.00) 		0.25
(1.00) 		0.446
(1.00) 		0.375
(1.00)
DCP1B 9 (6%) 137 0.887
(1.00) 		0.204
(1.00) 		0.0708
(1.00) 		0.166
(1.00) 		0.212
(1.00) 		0.317
(1.00) 		0.0285
(1.00) 		0.0824
(1.00) 		0.611
(1.00) 		0.0575
(1.00)
RBMX 5 (3%) 141 0.0773
(1.00) 		0.54
(1.00) 		0.849
(1.00) 		1
(1.00) 		0.51
(1.00) 		0.328
(1.00) 		0.844
(1.00) 		0.109
(1.00)
ZNF880 4 (3%) 142 1
(1.00) 		0.717
(1.00) 		1
(1.00) 		0.45
(1.00) 		0.386
(1.00) 		0.78
(1.00) 		1
(1.00) 		0.486
(1.00)
UBAC1 5 (3%) 141 0.227
(1.00) 		0.427
(1.00) 		1
(1.00) 		0.97
(1.00) 		0.106
(1.00) 		1
(1.00) 		0.736
(1.00) 		0.332
(1.00) 		0.542
(1.00) 		0.649
(1.00)
CASQ2 8 (5%) 138 0.876
(1.00) 		0.677
(1.00) 		0.0885
(1.00) 		0.0731
(1.00) 		1
(1.00) 		0.224
(1.00) 		0.954
(1.00) 		0.597
(1.00) 		1
(1.00) 		0.695
(1.00)
ZNF678 5 (3%) 141 0.0949
(1.00) 		0.277
(1.00) 		0.121
(1.00) 		0.229
(1.00) 		0.844
(1.00) 		1
(1.00) 		0.0287
(1.00) 		0.663
(1.00) 		0.345
(1.00) 		0.488
(1.00)
RBM12 5 (3%) 141 0.81
(1.00) 		0.106
(1.00) 		1
(1.00) 		0.783
(1.00) 		0.103
(1.00) 		0.819
(1.00) 		0.436
(1.00) 		0.83
(1.00) 		0.284
(1.00) 		1
(1.00)
VWA3A 5 (3%) 141 0.809
(1.00) 		0.682
(1.00) 		0.201
(1.00) 		0.383
(1.00) 		1
(1.00) 		0.817
(1.00) 		1
(1.00) 		0.832
(1.00) 		0.287
(1.00) 		0.709
(1.00)
NBPF16 7 (5%) 139 1
(1.00) 		0.372
(1.00) 		0.687
(1.00) 		0.0928
(1.00) 		0.493
(1.00) 		0.551
(1.00) 		0.497
(1.00) 		0.0379
(1.00)
PARP10 5 (3%) 141 0.811
(1.00) 		0.607
(1.00) 		0.795
(1.00) 		0.596
(1.00) 		1
(1.00) 		0.817
(1.00) 		0.594
(1.00) 		0.534
(1.00) 		0.283
(1.00) 		0.244
(1.00)
TGFBR2 8 (5%) 138 0.656
(1.00) 		0.159
(1.00) 		0.634
(1.00) 		0.724
(1.00) 		0.805
(1.00) 		0.886
(1.00) 		0.619
(1.00) 		0.277
(1.00) 		0.225
(1.00) 		0.494
(1.00)
HACL1 5 (3%) 141 0.808
(1.00) 		0.479
(1.00) 		0.763
(1.00) 		0.0828
(1.00) 		0.708
(1.00) 		0.514
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00)
PRKRA 4 (3%) 142 0.117
(1.00) 		0.778
(1.00) 		0.677
(1.00) 		1
(1.00) 		0.678
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00)
SORBS2 6 (4%) 140 0.828
(1.00) 		0.34
(1.00) 		0.64
(1.00) 		0.025
(1.00) 		0.351
(1.00) 		0.48
(1.00) 		0.338
(1.00) 		0.268
(1.00) 		0.152
(1.00) 		0.737
(1.00)
CD86 6 (4%) 140 0.189
(1.00) 		0.556
(1.00) 		0.468
(1.00) 		0.042
(1.00) 		0.409
(1.00) 		1
(1.00) 		0.525
(1.00) 		0.723
(1.00) 		0.576
(1.00) 		0.739
(1.00)
RNF32 5 (3%) 141 0.312
(1.00) 		0.275
(1.00) 		0.186
(1.00) 		0.239
(1.00) 		0.848
(1.00) 		1
(1.00) 		0.0284
(1.00) 		0.662
(1.00) 		0.823
(1.00) 		0.49
(1.00)
SDCBP 6 (4%) 140 0.0576
(1.00) 		0.189
(1.00) 		0.505
(1.00) 		0.757
(1.00) 		1
(1.00) 		0.843
(1.00) 		0.0407
(1.00) 		0.845
(1.00) 		0.153
(1.00) 		0.246
(1.00)
CDC27 7 (5%) 139 0.428
(1.00) 		0.0529
(1.00) 		0.777
(1.00) 		0.446
(1.00) 		0.347
(1.00) 		1
(1.00) 		0.174
(1.00) 		0.37
(1.00)
NLRP2 6 (4%) 140 0.461
(1.00) 		0.531
(1.00) 		0.943
(1.00) 		0.108
(1.00) 		0.349
(1.00) 		1
(1.00) 		0.336
(1.00) 		0.269
(1.00) 		0.0181
(1.00) 		0.739
(1.00)
PLIN4 7 (5%) 139 0.13
(1.00) 		0.682
(1.00) 		0.533
(1.00) 		0.618
(1.00) 		0.884
(1.00) 		0.302
(1.00) 		0.646
(1.00) 		0.22
(1.00) 		0.476
(1.00) 		0.677
(1.00)
CBX3 4 (3%) 142 0.578
(1.00) 		0.201
(1.00) 		0.677
(1.00) 		1
(1.00) 		0.678
(1.00) 		0.346
(1.00) 		1
(1.00) 		0.65
(1.00)
SUZ12 4 (3%) 142 0.749
(1.00) 		0.662
(1.00) 		0.364
(1.00) 		0.0238
(1.00) 		0.81
(1.00) 		0.597
(1.00) 		0.434
(1.00) 		0.476
(1.00) 		0.54
(1.00) 		1
(1.00)
MTBP 3 (2%) 143 1
(1.00) 		0.153
(1.00) 		0.084
(1.00) 		0.443
(1.00) 		1
(1.00) 		1
(1.00) 		0.864
(1.00) 		1
(1.00) 		0.6
(1.00) 		0.147
(1.00)
SYT14 4 (3%) 142 0.31
(1.00) 		0.779
(1.00) 		0.216
(1.00) 		0.0119
(1.00) 		0.81
(1.00) 		0.598
(1.00) 		1
(1.00) 		0.479
(1.00) 		0.237
(1.00) 		0.576
(1.00)
RNF43 8 (5%) 138 0.765
(1.00) 		0.0188
(1.00) 		0.468
(1.00) 		0.261
(1.00) 		0.0969
(1.00) 		0.186
(1.00) 		0.573
(1.00) 		0.0931
(1.00) 		0.225
(1.00) 		0.378
(1.00)
AAK1 4 (3%) 142 0.0246
(1.00) 		0.665
(1.00) 		0.764
(1.00) 		0.329
(1.00) 		0.0404
(1.00) 		0.0602
(1.00) 		0.00297
(1.00) 		0.152
(1.00) 		0.151
(1.00) 		0.104
(1.00)
HSPE1 4 (3%) 142 0.306
(1.00) 		0.338
(1.00) 		1
(1.00) 		0.327
(1.00) 		0.0748
(1.00) 		0.617
(1.00) 		0.825
(1.00) 		0.385
(1.00)
TMCC1 7 (5%) 139 0.0794
(1.00) 		0.737
(1.00) 		0.36
(1.00) 		0.146
(1.00) 		0.778
(1.00) 		1
(1.00) 		0.299
(1.00) 		0.736
(1.00) 		0.218
(1.00) 		0.74
(1.00)
CFTR 7 (5%) 139 0.129
(1.00) 		0.802
(1.00) 		0.323
(1.00) 		0.104
(1.00) 		0.315
(1.00) 		0.258
(1.00) 		0.00531
(1.00) 		0.551
(1.00) 		0.148
(1.00) 		0.681
(1.00)
NAA20 3 (2%) 143 0.326
(1.00) 		0.153
(1.00) 		0.0119
(1.00) 		0.114
(1.00) 		1
(1.00) 		0.727
(1.00) 		0.134
(1.00) 		1
(1.00) 		0.601
(1.00) 		1
(1.00)
TRPC4 6 (4%) 140 0.344
(1.00) 		0.807
(1.00) 		0.436
(1.00) 		0.113
(1.00) 		0.304
(1.00) 		0.845
(1.00) 		0.938
(1.00) 		0.482
(1.00) 		0.865
(1.00) 		0.544
(1.00)
CHRNA9 4 (3%) 142 0.0812
(1.00) 		0.156
(1.00) 		0.603
(1.00) 		0.377
(1.00) 		0.677
(1.00) 		0.763
(1.00) 		0.744
(1.00) 		0.617
(1.00) 		0.2
(1.00) 		0.824
(1.00)
SP140 5 (3%) 141 1
(1.00) 		0.642
(1.00) 		0.203
(1.00) 		0.381
(1.00) 		1
(1.00) 		0.816
(1.00) 		1
(1.00) 		0.33
(1.00) 		0.285
(1.00) 		0.85
(1.00)
KCNA7 5 (3%) 141 0.582
(1.00) 		0.0554
(1.00) 		0.249
(1.00) 		0.439
(1.00) 		0.055
(1.00) 		0.0823
(1.00) 		0.0676
(1.00) 		0.139
(1.00) 		1
(1.00) 		0.0753
(1.00)
AQP7 7 (5%) 139 0.347
(1.00) 		0.0738
(1.00) 		0.152
(1.00) 		0.36
(1.00) 		0.683
(1.00) 		0.749
(1.00) 		0.329
(1.00) 		0.269
(1.00) 		0.375
(1.00) 		0.766
(1.00)
SKA3 6 (4%) 140 0.0798
(1.00) 		0.486
(1.00) 		0.295
(1.00) 		0.203
(1.00) 		0.123
(1.00) 		0.841
(1.00) 		0.421
(1.00) 		0.723
(1.00) 		0.576
(1.00) 		0.207
(1.00)
DAAM1 6 (4%) 140 0.46
(1.00) 		0.664
(1.00) 		0.219
(1.00) 		0.141
(1.00) 		0.479
(1.00) 		1
(1.00) 		0.654
(1.00) 		0.723
(1.00) 		0.719
(1.00) 		0.00535
(1.00)
MSH2 4 (3%) 142 0.747
(1.00) 		0.37
(1.00) 		0.0569
(1.00) 		0.239
(1.00) 		0.341
(1.00) 		0.45
(1.00) 		0.436
(1.00) 		0.781
(1.00) 		0.683
(1.00) 		0.0394
(1.00)
NUP210L 5 (3%) 141 0.0973
(1.00) 		0.867
(1.00) 		0.0138
(1.00) 		0.0937
(1.00) 		0.606
(1.00) 		0.816
(1.00) 		0.404
(1.00) 		0.833
(1.00) 		0.719
(1.00) 		0.849
(1.00)
GPR98 8 (5%) 138 0.0797
(1.00) 		0.578
(1.00) 		0.322
(1.00) 		0.00645
(1.00) 		0.897
(1.00) 		0.497
(1.00) 		0.0443
(1.00) 		1
(1.00) 		0.719
(1.00) 		0.134
(1.00)
CD2AP 3 (2%) 143 0.445
(1.00) 		0.486
(1.00) 		0.146
(1.00) 		0.498
(1.00) 		1
(1.00) 		0.728
(1.00) 		0.867
(1.00) 		0.729
(1.00)
RREB1 9 (6%) 137 0.511
(1.00) 		0.802
(1.00) 		0.587
(1.00) 		0.156
(1.00) 		0.548
(1.00) 		0.887
(1.00) 		0.138
(1.00) 		1
(1.00) 		0.404
(1.00) 		0.815
(1.00)
KIAA0586 6 (4%) 140 0.572
(1.00) 		0.192
(1.00) 		1
(1.00) 		0.695
(1.00) 		0.561
(1.00) 		0.256
(1.00) 		0.937
(1.00) 		0.723
(1.00) 		0.423
(1.00) 		0.0073
(1.00)
GNAS 9 (6%) 137 0.00943
(1.00) 		0.543
(1.00) 		0.149
(1.00) 		0.772
(1.00) 		0.818
(1.00) 		0.888
(1.00) 		0.959
(1.00) 		0.546
(1.00) 		0.753
(1.00) 		0.569
(1.00)
FAR1 4 (3%) 142 0.748
(1.00) 		0.176
(1.00) 		0.113
(1.00) 		0.164
(1.00) 		0.812
(1.00) 		0.594
(1.00) 		0.434
(1.00) 		0.479
(1.00) 		0.542
(1.00) 		1
(1.00)
OR2T4 6 (4%) 140 0.573
(1.00) 		0.412
(1.00) 		0.00821
(1.00) 		0.0665
(1.00) 		0.752
(1.00) 		1
(1.00) 		0.42
(1.00) 		0.721
(1.00) 		0.574
(1.00) 		0.632
(1.00)
GPR50 5 (3%) 141 0.62
(1.00) 		0.767
(1.00) 		0.277
(1.00) 		0.382
(1.00) 		0.707
(1.00) 		0.648
(1.00) 		0.0287
(1.00) 		0.429
(1.00) 		0.112
(1.00) 		0.491
(1.00)
TAX1BP1 5 (3%) 141 0.0583
(1.00) 		0.376
(1.00) 		0.536
(1.00) 		0.24
(1.00) 		0.708
(1.00) 		0.514
(1.00) 		0.0366
(1.00) 		0.831
(1.00) 		0.443
(1.00) 		0.709
(1.00)
CCDC33 3 (2%) 143 0.444
(1.00) 		0.487
(1.00) 		0.315
(1.00) 		0.726
(1.00) 		0.256
(1.00) 		0.729
(1.00)
JAK2 4 (3%) 142 0.195
(1.00) 		0.37
(1.00) 		0.105
(1.00) 		0.312
(1.00) 		1
(1.00) 		1
(1.00) 		0.0271
(1.00) 		1
(1.00) 		0.684
(1.00) 		0.822
(1.00)
COL28A1 5 (3%) 141 0.494
(1.00) 		0.609
(1.00) 		0.0306
(1.00) 		0.0772
(1.00) 		0.507
(1.00) 		0.819
(1.00) 		0.15
(1.00) 		0.328
(1.00) 		0.722
(1.00) 		0.849
(1.00)
KLHL20 3 (2%) 143 1
(1.00) 		0.271
(1.00) 		0.248
(1.00) 		0.384
(1.00) 		1
(1.00) 		0.724
(1.00) 		0.864
(1.00) 		0.731
(1.00) 		0.798
(1.00) 		0.581
(1.00)
WRN 4 (3%) 142 0.117
(1.00) 		0.374
(1.00) 		0.338
(1.00) 		1
(1.00) 		0.027
(1.00) 		0.781
(1.00) 		0.151
(1.00) 		0.103
(1.00)
RBL2 4 (3%) 142 1
(1.00) 		0.908
(1.00) 		0.718
(1.00) 		0.493
(1.00) 		0.555
(1.00) 		0.454
(1.00) 		1
(1.00) 		0.616
(1.00) 		1
(1.00) 		0.824
(1.00)
BCLAF1 7 (5%) 139 0.518
(1.00) 		0.343
(1.00) 		0.436
(1.00) 		0.334
(1.00) 		0.601
(1.00) 		0.532
(1.00) 		0.898
(1.00) 		0.272
(1.00) 		0.375
(1.00) 		0.763
(1.00)
MORF4L1 3 (2%) 143 0.719
(1.00) 		1
(1.00) 		0.0117
(1.00) 		0.114
(1.00) 		0.316
(1.00) 		0.244
(1.00) 		0.742
(1.00) 		0.732
(1.00) 		0.238
(1.00) 		0.425
(1.00)
SEPHS2 5 (3%) 141 1
(1.00) 		0.544
(1.00) 		0.436
(1.00) 		0.809
(1.00) 		1
(1.00) 		0.328
(1.00) 		1
(1.00) 		1
(1.00) 		0.843
(1.00) 		1
(1.00)
HELZ 5 (3%) 141 1
(1.00) 		1
(1.00) 		0.03
(1.00) 		0.0788
(1.00) 		0.606
(1.00) 		0.816
(1.00) 		0.852
(1.00) 		0.831
(1.00) 		0.72
(1.00) 		0.849
(1.00)
DOCK8 5 (3%) 141 0.146
(1.00) 		0.402
(1.00) 		0.359
(1.00) 		0.147
(1.00) 		0.305
(1.00) 		0.0816
(1.00) 		0.852
(1.00) 		0.83
(1.00) 		1
(1.00) 		0.459
(1.00)
KLK13 5 (3%) 141 0.81
(1.00) 		0.814
(1.00) 		0.0245
(1.00) 		0.145
(1.00) 		0.608
(1.00) 		0.818
(1.00) 		0.409
(1.00) 		0.831
(1.00) 		0.191
(1.00) 		0.848
(1.00)
OXR1 4 (3%) 142 0.751
(1.00) 		1
(1.00) 		0.128
(1.00) 		0.555
(1.00) 		0.811
(1.00) 		0.76
(1.00) 		0.432
(1.00) 		1
(1.00) 		0.345
(1.00) 		0.652
(1.00)
OR52D1 4 (3%) 142 1
(1.00) 		0.48
(1.00) 		0.0249
(1.00) 		0.09
(1.00) 		0.0617
(1.00) 		0.212
(1.00) 		0.386
(1.00) 		0.782
(1.00) 		0.825
(1.00) 		0.0588
(1.00)
CSTF2T 3 (2%) 143 1
(1.00) 		0.274
(1.00) 		0.792
(1.00) 		0.468
(1.00) 		0.211
(1.00) 		0.506
(1.00) 		0.6
(1.00) 		0.744
(1.00)
AP3B1 4 (3%) 142 1
(1.00) 		0.175
(1.00) 		0.214
(1.00) 		0.493
(1.00) 		1
(1.00) 		0.326
(1.00) 		1
(1.00) 		0.616
(1.00) 		1
(1.00) 		0.489
(1.00)
OMA1 3 (2%) 143 0.448
(1.00) 		0.32
(1.00) 		0.0555
(1.00) 		0.0751
(1.00) 		1
(1.00) 		0.726
(1.00) 		0.867
(1.00) 		0.731
(1.00)
IYD 6 (4%) 140 0.458
(1.00) 		0.894
(1.00) 		0.48
(1.00) 		1
(1.00) 		0.828
(1.00) 		0.723
(1.00) 		0.122
(1.00) 		0.384
(1.00)
NBPF9 3 (2%) 143 1
(1.00) 		0.152
(1.00) 		0.788
(1.00) 		0.467
(1.00) 		0.866
(1.00) 		0.337
(1.00) 		0.318
(1.00) 		0.743
(1.00)
PRSS3 3 (2%) 143 1
(1.00) 		0.886
(1.00) 		0.638
(1.00) 		0.639
(1.00) 		0.791
(1.00) 		0.164
(1.00) 		0.866
(1.00) 		0.337
(1.00) 		1
(1.00) 		0.149
(1.00)
COBL 6 (4%) 140 0.829
(1.00) 		0.807
(1.00) 		0.169
(1.00) 		0.645
(1.00) 		0.865
(1.00) 		0.844
(1.00) 		0.781
(1.00) 		0.409
(1.00) 		0.495
(1.00) 		0.46
(1.00)
SORT1 5 (3%) 141 0.495
(1.00) 		0.256
(1.00) 		0.216
(1.00) 		0.0627
(1.00) 		0.189
(1.00) 		0.515
(1.00) 		0.272
(1.00) 		0.432
(1.00) 		0.616
(1.00) 		0.0167
(1.00)
SSBP3 3 (2%) 143 0.721
(1.00) 		0.319
(1.00) 		0.203
(1.00) 		0.0946
(1.00) 		0.0851
(1.00) 		0.508
(1.00) 		1
(1.00) 		0.424
(1.00)
GPSM2 3 (2%) 143 0.72
(1.00) 		1
(1.00) 		0.835
(1.00) 		1
(1.00) 		0.313
(1.00) 		1
(1.00) 		0.473
(1.00) 		0.73
(1.00) 		0.236
(1.00) 		0.424
(1.00)
EEF2 5 (3%) 141 1
(1.00) 		0.606
(1.00) 		0.536
(1.00) 		0.617
(1.00) 		0.305
(1.00) 		0.0806
(1.00) 		0.686
(1.00) 		0.43
(1.00) 		0.227
(1.00) 		0.245
(1.00)
ZACN 3 (2%) 143 0.143
(1.00) 		0.369
(1.00) 		0.358
(1.00) 		0.536
(1.00) 		0.788
(1.00) 		0.468
(1.00) 		0.641
(1.00) 		0.336
(1.00) 		1
(1.00) 		0.743
(1.00)
ZMYM2 3 (2%) 143 0.445
(1.00) 		0.485
(1.00) 		0.454
(1.00) 		0.0133
(1.00) 		1
(1.00) 		0.726
(1.00) 		0.865
(1.00) 		0.731
(1.00)
GSN 4 (3%) 142 1
(1.00) 		1
(1.00) 		0.25
(1.00) 		0.387
(1.00) 		1
(1.00) 		1
(1.00) 		0.677
(1.00) 		1
(1.00) 		0.268
(1.00) 		0.648
(1.00)
TGFBR1 8 (5%) 138 0.659
(1.00) 		0.962
(1.00) 		0.769
(1.00) 		0.708
(1.00) 		0.32
(1.00) 		0.499
(1.00) 		0.876
(1.00) 		1
(1.00) 		1
(1.00) 		0.779
(1.00)
MLPH 3 (2%) 143 0.627
(1.00) 		0.133
(1.00) 		0.334
(1.00) 		0.172
(1.00) 		0.204
(1.00) 		0.601
(1.00) 		0.15
(1.00)
UBXN4 3 (2%) 143 1
(1.00) 		0.271
(1.00) 		0.246
(1.00) 		0.385
(1.00) 		1
(1.00) 		0.727
(1.00) 		0.866
(1.00) 		0.731
(1.00) 		0.798
(1.00) 		0.576
(1.00)
KCNE1 4 (3%) 142 0.747
(1.00) 		0.662
(1.00) 		0.363
(1.00) 		0.0234
(1.00) 		0.81
(1.00) 		0.595
(1.00) 		0.435
(1.00) 		0.479
(1.00) 		0.544
(1.00) 		1
(1.00)
RTTN 5 (3%) 141 0.494
(1.00) 		0.607
(1.00) 		0.359
(1.00) 		0.78
(1.00) 		0.608
(1.00) 		0.819
(1.00) 		0.735
(1.00) 		0.33
(1.00) 		0.62
(1.00) 		0.574
(1.00)
FAM8A1 4 (3%) 142 1
(1.00) 		0.405
(1.00) 		0.114
(1.00) 		0.77
(1.00) 		0.674
(1.00) 		1
(1.00) 		0.896
(1.00) 		0.344
(1.00) 		1
(1.00) 		0.648
(1.00)
ACTRT2 3 (2%) 143 1
(1.00) 		0.626
(1.00) 		0.641
(1.00) 		0.834
(1.00) 		0.599
(1.00) 		0.467
(1.00) 		0.324
(1.00) 		0.504
(1.00) 		0.603
(1.00) 		0.285
(1.00)
DNAH7 7 (5%) 139 0.198
(1.00) 		0.708
(1.00) 		0.0368
(1.00) 		0.277
(1.00) 		0.601
(1.00) 		0.534
(1.00) 		0.432
(1.00) 		0.271
(1.00) 		0.786
(1.00) 		0.763
(1.00)
OR1N2 5 (3%) 141 0.498
(1.00) 		0.608
(1.00) 		0.27
(1.00) 		0.669
(1.00) 		0.707
(1.00) 		0.135
(1.00) 		0.47
(1.00) 		0.189
(1.00) 		0.442
(1.00) 		0.378
(1.00)
BRD8 3 (2%) 143 0.322
(1.00) 		0.317
(1.00) 		1
(1.00) 		1
(1.00) 		0.139
(1.00) 		0.73
(1.00) 		0.603
(1.00) 		0.579
(1.00)
MIPEP 3 (2%) 143 0.0833
(1.00) 		1
(1.00) 		0.276
(1.00) 		0.0768
(1.00) 		0.313
(1.00) 		0.242
(1.00) 		0.742
(1.00) 		0.728
(1.00)
SIGLEC14 3 (2%) 143 1
(1.00) 		0.887
(1.00) 		0.791
(1.00) 		1
(1.00) 		0.742
(1.00) 		1
(1.00) 		0.799
(1.00) 		1
(1.00)
ARID1A 7 (5%) 139 0.0796
(1.00) 		0.25
(1.00) 		0.454
(1.00) 		0.302
(1.00) 		0.884
(1.00) 		0.534
(1.00) 		0.349
(1.00) 		0.55
(1.00) 		0.687
(1.00) 		0.678
(1.00)
POM121 5 (3%) 141 1
(1.00) 		1
(1.00) 		0.943
(1.00) 		0.617
(1.00) 		0.846
(1.00) 		0.516
(1.00) 		0.185
(1.00) 		1
(1.00) 		0.844
(1.00) 		0.241
(1.00)
LCP2 3 (2%) 143 0.322
(1.00) 		0.627
(1.00) 		0.442
(1.00) 		1
(1.00) 		0.172
(1.00) 		1
(1.00) 		0.6
(1.00) 		0.741
(1.00)
L1CAM 6 (4%) 140 0.829
(1.00) 		0.943
(1.00) 		0.0373
(1.00) 		0.626
(1.00) 		0.478
(1.00) 		0.479
(1.00) 		0.937
(1.00) 		0.722
(1.00) 		1
(1.00) 		0.739
(1.00)
ABCG5 3 (2%) 143 0.444
(1.00) 		0.486
(1.00) 		0.249
(1.00) 		0.38
(1.00) 		1
(1.00) 		0.726
(1.00) 		0.867
(1.00) 		0.731
(1.00)
KRT2 5 (3%) 141 1
(1.00) 		1
(1.00) 		0.846
(1.00) 		0.514
(1.00) 		0.681
(1.00) 		0.665
(1.00) 		0.285
(1.00) 		0.458
(1.00)
ZNF780A 5 (3%) 141 0.624
(1.00) 		0.814
(1.00) 		0.361
(1.00) 		0.83
(1.00) 		1
(1.00) 		0.818
(1.00) 		0.51
(1.00) 		0.833
(1.00) 		0.62
(1.00) 		0.574
(1.00)
DDX4 5 (3%) 141 0.0566
(1.00) 		0.0707
(1.00) 		0.111
(1.00) 		0.161
(1.00) 		0.505
(1.00) 		0.82
(1.00) 		0.00763
(1.00) 		0.332
(1.00) 		1
(1.00) 		0.847
(1.00)
BTN2A1 3 (2%) 143 0.719
(1.00) 		0.487
(1.00) 		0.182
(1.00) 		0.109
(1.00) 		0.134
(1.00) 		1
(1.00) 		0.64
(1.00) 		0.506
(1.00) 		1
(1.00) 		0.15
(1.00)
TDRD5 4 (3%) 142 1
(1.00) 		0.523
(1.00) 		0.202
(1.00) 		0.639
(1.00) 		0.812
(1.00) 		1
(1.00) 		1
(1.00) 		0.478
(1.00) 		0.544
(1.00) 		0.645
(1.00)
OR2A14 4 (3%) 142 1
(1.00) 		0.778
(1.00) 		0.19
(1.00) 		0.599
(1.00) 		0.301
(1.00) 		0.48
(1.00) 		0.543
(1.00) 		1
(1.00)
PBRM1 5 (3%) 141 0.311
(1.00) 		0.607
(1.00) 		1
(1.00) 		0.328
(1.00) 		0.735
(1.00) 		0.533
(1.00) 		0.844
(1.00) 		1
(1.00)
SEPT2 3 (2%) 143 0.323
(1.00) 		0.229
(1.00) 		0.442
(1.00) 		0.335
(1.00) 		0.172
(1.00) 		1
(1.00) 		0.601
(1.00) 		0.0584
(1.00)
WDHD1 3 (2%) 143 0.442
(1.00) 		0.485
(1.00) 		1
(1.00) 		0.727
(1.00) 		0.865
(1.00) 		0.73
(1.00)
ANKRD49 3 (2%) 143 0.443
(1.00) 		0.317
(1.00) 		0.0571
(1.00) 		0.0782
(1.00) 		1
(1.00) 		0.726
(1.00) 		0.865
(1.00) 		0.727
(1.00)
PAPSS2 4 (3%) 142 1
(1.00) 		0.663
(1.00) 		0.0165
(1.00) 		0.089
(1.00) 		0.675
(1.00) 		1
(1.00) 		1
(1.00) 		0.479
(1.00) 		0.272
(1.00) 		0.218
(1.00)
GPRC6A 5 (3%) 141 0.0577
(1.00) 		0.379
(1.00) 		0.504
(1.00) 		0.276
(1.00) 		0.849
(1.00) 		0.649
(1.00) 		0.0277
(1.00) 		1
(1.00) 		0.439
(1.00) 		0.71
(1.00)
PDXDC1 3 (2%) 143 0.444
(1.00) 		0.701
(1.00) 		1
(1.00) 		0.335
(1.00) 		1
(1.00) 		1
(1.00) 		0.237
(1.00) 		0.575
(1.00)
TGM5 4 (3%) 142 0.747
(1.00) 		0.372
(1.00) 		0.128
(1.00) 		0.163
(1.00) 		1
(1.00) 		1
(1.00) 		0.436
(1.00) 		0.343
(1.00) 		0.682
(1.00) 		0.645
(1.00)
NUP54 3 (2%) 143 0.717
(1.00) 		0.488
(1.00) 		0.638
(1.00) 		0.0252
(1.00) 		1
(1.00) 		0.727
(1.00) 		1
(1.00) 		0.73
(1.00) 		0.237
(1.00) 		1
(1.00)
NLRP6 3 (2%) 143 0.443
(1.00) 		0.317
(1.00) 		0.44
(1.00) 		1
(1.00) 		0.549
(1.00) 		1
(1.00) 		0.161
(1.00) 		1
(1.00)
DHX35 4 (3%) 142 0.747
(1.00) 		0.177
(1.00) 		0.836
(1.00) 		1
(1.00) 		0.443
(1.00) 		0.326
(1.00) 		0.301
(1.00) 		0.615
(1.00) 		0.542
(1.00) 		0.82
(1.00)
CEACAM4 4 (3%) 142 0.58
(1.00) 		0.154
(1.00) 		0.338
(1.00) 		0.597
(1.00) 		0.895
(1.00) 		0.614
(1.00) 		0.272
(1.00) 		1
(1.00)
MMP13 3 (2%) 143 0.0239
(1.00) 		0.486
(1.00) 		0.44
(1.00) 		0.335
(1.00) 		0.17
(1.00) 		0.73
(1.00) 		0.16
(1.00) 		1
(1.00)
SYCP2 5 (3%) 141 0.0949
(1.00) 		0.869
(1.00) 		0.114
(1.00) 		0.163
(1.00) 		0.304
(1.00) 		1
(1.00) 		0.0527
(1.00) 		0.668
(1.00) 		0.619
(1.00) 		0.457
(1.00)
LACTB 3 (2%) 143 0.326
(1.00) 		0.625
(1.00) 		0.112
(1.00) 		0.164
(1.00) 		0.441
(1.00) 		1
(1.00) 		0.171
(1.00) 		1
(1.00) 		0.798
(1.00) 		0.577
(1.00)
TEKT4 6 (4%) 140 0.235
(1.00) 		0.229
(1.00) 		0.151
(1.00) 		0.444
(1.00) 		0.561
(1.00) 		0.844
(1.00) 		0.0594
(1.00) 		0.846
(1.00) 		0.866
(1.00) 		0.544
(1.00)
MC3R 4 (3%) 142 0.305
(1.00) 		0.156
(1.00) 		0.245
(1.00) 		0.567
(1.00) 		0.553
(1.00) 		1
(1.00) 		0.387
(1.00) 		1
(1.00) 		1
(1.00) 		0.646
(1.00)
CSRNP3 4 (3%) 142 0.324
(1.00) 		0.369
(1.00) 		0.0863
(1.00) 		0.0301
(1.00) 		0.14
(1.00) 		0.101
(1.00) 		0.348
(1.00) 		0.0401
(1.00)
PHF15 4 (3%) 142 1
(1.00) 		0.775
(1.00) 		0.248
(1.00) 		0.285
(1.00) 		0.135
(1.00) 		0.762
(1.00) 		0.611
(1.00) 		0.479
(1.00) 		1
(1.00) 		0.651
(1.00)
ZBTB4 4 (3%) 142 1
(1.00) 		0.524
(1.00) 		0.113
(1.00) 		0.639
(1.00) 		0.811
(1.00) 		0.597
(1.00) 		0.895
(1.00) 		0.477
(1.00) 		0.078
(1.00) 		0.647
(1.00)
RSPO1 3 (2%) 143 1
(1.00) 		1
(1.00) 		0.79
(1.00) 		1
(1.00) 		0.865
(1.00) 		1
(1.00) 		0.798
(1.00) 		0.742
(1.00)
WWP2 5 (3%) 141 0.493
(1.00) 		0.867
(1.00) 		0.847
(1.00) 		0.327
(1.00) 		1
(1.00) 		1
(1.00) 		0.444
(1.00) 		1
(1.00)
CPNE2 3 (2%) 143 0.323
(1.00) 		0.0362
(1.00) 		0.358
(1.00) 		0.327
(1.00) 		0.789
(1.00) 		0.468
(1.00) 		0.214
(1.00) 		0.506
(1.00) 		0.602
(1.00) 		0.744
(1.00)
WDR36 3 (2%) 143 0.326
(1.00) 		0.0626
(1.00) 		0.443
(1.00) 		1
(1.00) 		0.172
(1.00) 		0.203
(1.00) 		0.0523
(1.00) 		0.577
(1.00)
CYTH4 3 (2%) 143 0.72
(1.00) 		0.319
(1.00) 		1
(1.00) 		1
(1.00) 		0.866
(1.00) 		1
(1.00) 		1
(1.00) 		0.0586
(1.00)
BOC 4 (3%) 142 0.305
(1.00) 		0.777
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		0.614
(1.00) 		1
(1.00) 		0.82
(1.00)
C5ORF51 3 (2%) 143 0.143
(1.00) 		0.317
(1.00) 		0.249
(1.00) 		0.384
(1.00) 		1
(1.00) 		0.725
(1.00) 		0.137
(1.00) 		0.733
(1.00)
LILRB2 4 (3%) 142 0.197
(1.00) 		0.37
(1.00) 		0.356
(1.00) 		0.498
(1.00) 		0.0882
(1.00) 		0.0312
(1.00) 		0.0519
(1.00) 		0.101
(1.00) 		0.345
(1.00) 		0.0384
(1.00)
FLVCR1 3 (2%) 143 1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		0.866
(1.00) 		0.729
(1.00) 		0.44
(1.00) 		0.576
(1.00)
ZNF483 4 (3%) 142 0.579
(1.00) 		1
(1.00) 		0.146
(1.00) 		0.714
(1.00) 		0.679
(1.00) 		0.763
(1.00) 		0.679
(1.00) 		1
(1.00) 		0.541
(1.00) 		0.222
(1.00)
NDUFV2 3 (2%) 143 0.231
(1.00) 		0.487
(1.00) 		0.638
(1.00) 		0.047
(1.00) 		0.315
(1.00) 		0.241
(1.00) 		0.474
(1.00) 		0.73
(1.00) 		0.44
(1.00) 		0.424
(1.00)
PSMB4 4 (3%) 142 0.412
(1.00) 		0.177
(1.00) 		0.64
(1.00) 		0.869
(1.00) 		0.441
(1.00) 		0.328
(1.00) 		0.551
(1.00) 		0.477
(1.00) 		0.681
(1.00) 		1
(1.00)
KIAA1045 5 (3%) 141 0.494
(1.00) 		0.177
(1.00) 		0.186
(1.00) 		0.208
(1.00) 		0.134
(1.00) 		0.515
(1.00) 		0.0283
(1.00) 		0.428
(1.00) 		0.442
(1.00) 		0.192
(1.00)
KLK15 5 (3%) 141 0.314
(1.00) 		0.027
(1.00) 		0.188
(1.00) 		0.515
(1.00) 		0.183
(1.00) 		0.43
(1.00) 		1
(1.00) 		0.245
(1.00)
ZNF660 3 (2%) 143 0.323
(1.00) 		0.321
(1.00) 		0.642
(1.00) 		0.384
(1.00) 		0.44
(1.00) 		1
(1.00) 		0.171
(1.00) 		1
(1.00) 		0.798
(1.00) 		0.577
(1.00)
CCDC87 3 (2%) 143 0.445
(1.00) 		0.552
(1.00) 		0.835
(1.00) 		0.302
(1.00) 		0.6
(1.00) 		0.727
(1.00) 		0.745
(1.00) 		0.505
(1.00) 		1
(1.00) 		0.287
(1.00)
KIF4B 5 (3%) 141 0.31
(1.00) 		0.928
(1.00) 		0.104
(1.00) 		0.494
(1.00) 		0.849
(1.00) 		0.651
(1.00) 		0.592
(1.00) 		1
(1.00) 		0.844
(1.00) 		0.709
(1.00)
ENPP7 5 (3%) 141 0.493
(1.00) 		0.0471
(1.00) 		0.537
(1.00) 		0.184
(1.00) 		0.506
(1.00) 		0.819
(1.00) 		1
(1.00) 		0.329
(1.00) 		0.285
(1.00) 		0.574
(1.00)
TNRC6C 6 (4%) 140 0.826
(1.00) 		0.181
(1.00) 		0.0238
(1.00) 		0.265
(1.00) 		0.0749
(1.00) 		0.373
(1.00) 		0.354
(1.00) 		0.177
(1.00) 		0.493
(1.00) 		0.116
(1.00)
NAA40 3 (2%) 143 0.322
(1.00) 		0.887
(1.00) 		0.788
(1.00) 		1
(1.00) 		0.551
(1.00) 		1
(1.00) 		0.438
(1.00) 		0.577
(1.00)
AKAP13 6 (4%) 140 0.234
(1.00) 		0.763
(1.00) 		0.201
(1.00) 		0.383
(1.00) 		1
(1.00) 		0.842
(1.00) 		0.154
(1.00) 		0.725
(1.00) 		0.866
(1.00) 		0.116
(1.00)
ASH1L 6 (4%) 140 0.239
(1.00) 		0.323
(1.00) 		0.631
(1.00) 		0.652
(1.00) 		0.757
(1.00) 		0.163
(1.00) 		0.017
(1.00) 		0.406
(1.00) 		0.755
(1.00) 		0.857
(1.00)
ATP2C2 4 (3%) 142 1
(1.00) 		0.135
(1.00) 		0.183
(1.00) 		0.107
(1.00) 		0.0864
(1.00) 		0.764
(1.00) 		0.141
(1.00) 		0.212
(1.00) 		0.824
(1.00) 		0.0394
(1.00)
ANKRD30A 8 (5%) 138 0.765
(1.00) 		1
(1.00) 		0.735
(1.00) 		0.566
(1.00) 		0.317
(1.00) 		0.365
(1.00) 		0.952
(1.00) 		0.599
(1.00) 		0.458
(1.00) 		0.781
(1.00)
MKI67 6 (4%) 140 0.576
(1.00) 		0.764
(1.00) 		0.151
(1.00) 		0.595
(1.00) 		0.654
(1.00) 		0.123
(1.00) 		0.316
(1.00) 		0.482
(1.00) 		1
(1.00) 		0.317
(1.00)
FCGBP 12 (8%) 134 1
(1.00) 		0.933
(1.00) 		0.305
(1.00) 		0.625
(1.00) 		0.0419
(1.00) 		0.155
(1.00) 		0.00345
(1.00) 		0.561
(1.00) 		0.547
(1.00) 		0.555
(1.00)
SRFBP1 3 (2%) 143 0.719
(1.00) 		0.318
(1.00) 		0.455
(1.00) 		0.218
(1.00) 		1
(1.00) 		0.727
(1.00) 		1
(1.00) 		0.73
(1.00) 		0.236
(1.00) 		0.576
(1.00)
NFKBIZ 4 (3%) 142 1
(1.00) 		0.776
(1.00) 		0.356
(1.00) 		0.433
(1.00) 		0.678
(1.00) 		0.596
(1.00) 		1
(1.00) 		0.478
(1.00) 		0.544
(1.00) 		1
(1.00)
NBPF10 5 (3%) 141 0.0767
(1.00) 		0.241
(1.00) 		0.0389
(1.00) 		0.382
(1.00) 		0.105
(1.00) 		0.245
(1.00) 		0.436
(1.00) 		0.329
(1.00) 		0.0375
(1.00) 		0.572
(1.00)
ZNF358 4 (3%) 142 0.747
(1.00) 		0.133
(1.00) 		0.814
(1.00) 		1
(1.00) 		0.435
(1.00) 		0.479
(1.00) 		1
(1.00) 		0.649
(1.00)
HIST1H2BK 3 (2%) 143 0.722
(1.00) 		0.32
(1.00) 		0.79
(1.00) 		0.467
(1.00) 		0.639
(1.00) 		0.338
(1.00) 		0.0996
(1.00) 		0.744
(1.00)
DDB1 5 (3%) 141 0.495
(1.00) 		0.0706
(1.00) 		0.459
(1.00) 		0.0553
(1.00) 		1
(1.00) 		0.327
(1.00) 		0.152
(1.00) 		0.535
(1.00) 		0.845
(1.00) 		1
(1.00)
BVES 4 (3%) 142 0.415
(1.00) 		0.612
(1.00) 		0.0553
(1.00) 		0.0952
(1.00) 		0.677
(1.00) 		0.762
(1.00) 		0.612
(1.00) 		1
(1.00) 		0.546
(1.00) 		0.651
(1.00)
SLC26A3 3 (2%) 143 1
(1.00) 		0.886
(1.00) 		0.249
(1.00) 		0.386
(1.00) 		0.441
(1.00) 		0.333
(1.00) 		0.552
(1.00) 		1
(1.00) 		0.801
(1.00) 		0.578
(1.00)
CMYA5 8 (5%) 138 0.335
(1.00) 		0.576
(1.00) 		0.535
(1.00) 		0.242
(1.00) 		0.316
(1.00) 		0.668
(1.00) 		0.666
(1.00) 		0.444
(1.00) 		0.118
(1.00) 		1
(1.00)
CHSY3 5 (3%) 141 0.493
(1.00) 		0.378
(1.00) 		0.0246
(1.00) 		0.144
(1.00) 		0.0393
(1.00) 		0.105
(1.00) 		0.0749
(1.00) 		0.0892
(1.00) 		0.527
(1.00) 		0.025
(1.00)
AGAP6 7 (5%) 139 0.518
(1.00) 		0.399
(1.00) 		0.0316
(1.00) 		0.194
(1.00) 		0.0589
(1.00) 		0.144
(1.00) 		0.187
(1.00) 		0.738
(1.00) 		0.375
(1.00) 		0.00819
(1.00)
NGF 4 (3%) 142 0.748
(1.00) 		0.908
(1.00) 		0.364
(1.00) 		0.493
(1.00) 		1
(1.00) 		0.596
(1.00) 		0.748
(1.00) 		0.476
(1.00) 		0.274
(1.00) 		1
(1.00)
SARS2 3 (2%) 143 1
(1.00) 		0.489
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		0.237
(1.00) 		1
(1.00)
ADORA3 5 (3%) 141 0.619
(1.00) 		0.814
(1.00) 		0.251
(1.00) 		0.22
(1.00) 		0.305
(1.00) 		0.515
(1.00) 		0.687
(1.00) 		0.832
(1.00) 		0.844
(1.00) 		0.459
(1.00)
LUZP1 4 (3%) 142 0.158
(1.00) 		0.155
(1.00) 		0.64
(1.00) 		0.188
(1.00) 		0.811
(1.00) 		0.596
(1.00) 		0.896
(1.00) 		0.476
(1.00) 		0.0777
(1.00) 		1
(1.00)
ATP11B 4 (3%) 142 0.416
(1.00) 		0.307
(1.00) 		0.0366
(1.00) 		0.165
(1.00) 		0.812
(1.00) 		0.599
(1.00) 		0.896
(1.00) 		0.479
(1.00) 		0.0795
(1.00) 		1
(1.00)
RAG1 4 (3%) 142 0.58
(1.00) 		0.155
(1.00) 		1
(1.00) 		1
(1.00) 		0.893
(1.00) 		0.477
(1.00) 		0.543
(1.00) 		1
(1.00)
HK2 4 (3%) 142 1
(1.00) 		0.662
(1.00) 		0.718
(1.00) 		0.78
(1.00) 		0.672
(1.00) 		1
(1.00) 		1
(1.00) 		0.476
(1.00) 		0.267
(1.00) 		0.648
(1.00)
'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-04 (Fisher's exact test), Q value = 0.51

Table S1.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
KRAS MUTATED 48 62 13
KRAS WILD-TYPE 18 3 1

Figure S1.  Get High-res Image Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 1

Table S2.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
KRAS MUTATED 33 23 43 24
KRAS WILD-TYPE 5 6 2 10

Figure S2.  Get High-res Image Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S3.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
KRAS MUTATED 29 14 7 9 12
KRAS WILD-TYPE 5 2 4 2 1
'KRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S4.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
KRAS MUTATED 11 16 16 5 5 13 5
KRAS WILD-TYPE 1 1 5 4 1 1 1
'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S5.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
KRAS MUTATED 64 35 24
KRAS WILD-TYPE 7 8 8
'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0411 (Fisher's exact test), Q value = 1

Table S6.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
KRAS MUTATED 57 56 10
KRAS WILD-TYPE 10 7 6

Figure S3.  Get High-res Image Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S7.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
KRAS MUTATED 56 29 24 14
KRAS WILD-TYPE 6 7 4 6
'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 1

Table S8.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
KRAS MUTATED 81 27 15
KRAS WILD-TYPE 8 8 7

Figure S4.  Get High-res Image Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S9.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
KRAS MUTATED 54 39 28
KRAS WILD-TYPE 8 12 3
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0944 (Fisher's exact test), Q value = 1

Table S10.  Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
KRAS MUTATED 67 37 17
KRAS WILD-TYPE 8 8 7
'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.076

Table S11.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
TP53 MUTATED 35 56 9
TP53 WILD-TYPE 31 9 5

Figure S5.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S12.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
TP53 MUTATED 26 18 33 23
TP53 WILD-TYPE 12 11 12 11
'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S13.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
TP53 MUTATED 23 11 5 7 10
TP53 WILD-TYPE 11 5 6 4 3
'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S14.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
TP53 MUTATED 7 13 12 4 4 12 4
TP53 WILD-TYPE 5 4 9 5 2 2 2
'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.946 (Fisher's exact test), Q value = 1

Table S15.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
TP53 MUTATED 49 30 21
TP53 WILD-TYPE 22 13 11
'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S16.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
TP53 MUTATED 45 44 11
TP53 WILD-TYPE 22 19 5
'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S17.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
TP53 MUTATED 44 23 18 15
TP53 WILD-TYPE 18 13 10 5
'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S18.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
TP53 MUTATED 64 21 15
TP53 WILD-TYPE 25 14 7
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S19.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
TP53 MUTATED 44 35 19
TP53 WILD-TYPE 18 16 12
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S20.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
TP53 MUTATED 53 30 15
TP53 WILD-TYPE 22 15 9
'JMY MUTATION STATUS' versus 'CN_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S21.  Gene #3: 'JMY MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
JMY MUTATED 20 28 7
JMY WILD-TYPE 46 37 7
'JMY MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S22.  Gene #3: 'JMY MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
JMY MUTATED 16 8 17 14
JMY WILD-TYPE 22 21 28 20
'JMY MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S23.  Gene #3: 'JMY MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
JMY MUTATED 11 7 4 2 7
JMY WILD-TYPE 23 9 7 9 6
'JMY MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S24.  Gene #3: 'JMY MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
JMY MUTATED 4 8 5 2 3 6 3
JMY WILD-TYPE 8 9 16 7 3 8 3
'JMY MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S25.  Gene #3: 'JMY MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
JMY MUTATED 30 15 10
JMY WILD-TYPE 41 28 22
'JMY MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S26.  Gene #3: 'JMY MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
JMY MUTATED 26 24 5
JMY WILD-TYPE 41 39 11
'JMY MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S27.  Gene #3: 'JMY MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
JMY MUTATED 26 15 10 4
JMY WILD-TYPE 36 21 18 16
'JMY MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S28.  Gene #3: 'JMY MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
JMY MUTATED 38 10 7
JMY WILD-TYPE 51 25 15
'JMY MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S29.  Gene #3: 'JMY MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
JMY MUTATED 27 16 12
JMY WILD-TYPE 35 35 19
'JMY MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S30.  Gene #3: 'JMY MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
JMY MUTATED 32 18 5
JMY WILD-TYPE 43 27 19
'RIOK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S31.  Gene #4: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
RIOK1 MUTATED 27 20 8
RIOK1 WILD-TYPE 39 45 6
'RIOK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0749 (Fisher's exact test), Q value = 1

Table S32.  Gene #4: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
RIOK1 MUTATED 11 17 16 11
RIOK1 WILD-TYPE 27 12 29 23
'RIOK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S33.  Gene #4: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
RIOK1 MUTATED 9 9 6 5 5
RIOK1 WILD-TYPE 25 7 5 6 8
'RIOK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S34.  Gene #4: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
RIOK1 MUTATED 3 10 7 4 4 5 1
RIOK1 WILD-TYPE 9 7 14 5 2 9 5
'RIOK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S35.  Gene #4: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
RIOK1 MUTATED 21 21 13
RIOK1 WILD-TYPE 50 22 19
'RIOK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S36.  Gene #4: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
RIOK1 MUTATED 29 20 6
RIOK1 WILD-TYPE 38 43 10
'RIOK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S37.  Gene #4: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
RIOK1 MUTATED 20 17 9 9
RIOK1 WILD-TYPE 42 19 19 11
'RIOK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S38.  Gene #4: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
RIOK1 MUTATED 29 17 9
RIOK1 WILD-TYPE 60 18 13
'RIOK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S39.  Gene #4: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
RIOK1 MUTATED 23 23 8
RIOK1 WILD-TYPE 39 28 23
'RIOK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S40.  Gene #4: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
RIOK1 MUTATED 24 21 9
RIOK1 WILD-TYPE 51 24 15
'LCE2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S41.  Gene #5: 'LCE2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
LCE2A MUTATED 21 21 3
LCE2A WILD-TYPE 45 44 11
'LCE2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S42.  Gene #5: 'LCE2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
LCE2A MUTATED 11 11 15 9
LCE2A WILD-TYPE 27 18 30 25
'LCE2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S43.  Gene #5: 'LCE2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
LCE2A MUTATED 13 5 2 3 1
LCE2A WILD-TYPE 21 11 9 8 12
'LCE2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S44.  Gene #5: 'LCE2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
LCE2A MUTATED 3 5 9 2 0 2 3
LCE2A WILD-TYPE 9 12 12 7 6 12 3
'LCE2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S45.  Gene #5: 'LCE2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
LCE2A MUTATED 24 14 8
LCE2A WILD-TYPE 47 29 24
'LCE2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S46.  Gene #5: 'LCE2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
LCE2A MUTATED 23 20 3
LCE2A WILD-TYPE 44 43 13
'LCE2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S47.  Gene #5: 'LCE2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
LCE2A MUTATED 22 12 7 5
LCE2A WILD-TYPE 40 24 21 15
'LCE2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S48.  Gene #5: 'LCE2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
LCE2A MUTATED 29 14 3
LCE2A WILD-TYPE 60 21 19
'LCE2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S49.  Gene #5: 'LCE2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
LCE2A MUTATED 21 15 9
LCE2A WILD-TYPE 41 36 22
'LCE2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S50.  Gene #5: 'LCE2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
LCE2A MUTATED 26 15 4
LCE2A WILD-TYPE 49 30 20
'C1QB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S51.  Gene #6: 'C1QB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
C1QB MUTATED 16 13 5
C1QB WILD-TYPE 50 52 9
'C1QB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S52.  Gene #6: 'C1QB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
C1QB MUTATED 12 7 10 6
C1QB WILD-TYPE 26 22 35 28
'C1QB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S53.  Gene #6: 'C1QB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
C1QB MUTATED 4 2 2 4 4
C1QB WILD-TYPE 30 14 9 7 9
'C1QB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S54.  Gene #6: 'C1QB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
C1QB MUTATED 1 3 3 0 2 5 2
C1QB WILD-TYPE 11 14 18 9 4 9 4
'C1QB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S55.  Gene #6: 'C1QB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
C1QB MUTATED 15 13 7
C1QB WILD-TYPE 56 30 25
'C1QB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S56.  Gene #6: 'C1QB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
C1QB MUTATED 18 14 3
C1QB WILD-TYPE 49 49 13
'C1QB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S57.  Gene #6: 'C1QB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
C1QB MUTATED 13 9 6 7
C1QB WILD-TYPE 49 27 22 13
'C1QB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S58.  Gene #6: 'C1QB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
C1QB MUTATED 21 9 5
C1QB WILD-TYPE 68 26 17
'C1QB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S59.  Gene #6: 'C1QB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
C1QB MUTATED 16 11 7
C1QB WILD-TYPE 46 40 24
'C1QB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S60.  Gene #6: 'C1QB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
C1QB MUTATED 20 11 3
C1QB WILD-TYPE 55 34 21
'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S61.  Gene #7: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
CDKN2A MUTATED 10 15 5
CDKN2A WILD-TYPE 56 50 9
'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0433 (Fisher's exact test), Q value = 1

Table S62.  Gene #7: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
CDKN2A MUTATED 12 7 9 2
CDKN2A WILD-TYPE 26 22 36 32

Figure S6.  Get High-res Image Gene #7: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CDKN2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S63.  Gene #7: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
CDKN2A MUTATED 5 2 2 4 3
CDKN2A WILD-TYPE 29 14 9 7 10
'CDKN2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S64.  Gene #7: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
CDKN2A MUTATED 0 2 3 2 3 4 2
CDKN2A WILD-TYPE 12 15 18 7 3 10 4
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0588 (Fisher's exact test), Q value = 1

Table S65.  Gene #7: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
CDKN2A MUTATED 17 11 2
CDKN2A WILD-TYPE 54 32 30
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S66.  Gene #7: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
CDKN2A MUTATED 17 11 2
CDKN2A WILD-TYPE 50 52 14
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S67.  Gene #7: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
CDKN2A MUTATED 14 9 5 2
CDKN2A WILD-TYPE 48 27 23 18
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S68.  Gene #7: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
CDKN2A MUTATED 18 10 2
CDKN2A WILD-TYPE 71 25 20
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S69.  Gene #7: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
CDKN2A MUTATED 15 9 5
CDKN2A WILD-TYPE 47 42 26
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S70.  Gene #7: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
CDKN2A MUTATED 12 14 3
CDKN2A WILD-TYPE 63 31 21
'AEBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S71.  Gene #8: 'AEBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
AEBP1 MUTATED 12 10 4
AEBP1 WILD-TYPE 54 55 10
'AEBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S72.  Gene #8: 'AEBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
AEBP1 MUTATED 6 7 7 6
AEBP1 WILD-TYPE 32 22 38 28
'AEBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S73.  Gene #8: 'AEBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
AEBP1 MUTATED 6 2 6 2 3
AEBP1 WILD-TYPE 28 14 5 9 10
'AEBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 1

Table S74.  Gene #8: 'AEBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
AEBP1 MUTATED 4 3 2 4 2 3 1
AEBP1 WILD-TYPE 8 14 19 5 4 11 5
'AEBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S75.  Gene #8: 'AEBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
AEBP1 MUTATED 9 10 7
AEBP1 WILD-TYPE 62 33 25
'AEBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S76.  Gene #8: 'AEBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
AEBP1 MUTATED 13 9 4
AEBP1 WILD-TYPE 54 54 12
'AEBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0365 (Fisher's exact test), Q value = 1

Table S77.  Gene #8: 'AEBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
AEBP1 MUTATED 5 9 8 4
AEBP1 WILD-TYPE 57 27 20 16

Figure S7.  Get High-res Image Gene #8: 'AEBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AEBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S78.  Gene #8: 'AEBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
AEBP1 MUTATED 13 7 6
AEBP1 WILD-TYPE 76 28 16
'AEBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S79.  Gene #8: 'AEBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
AEBP1 MUTATED 8 12 6
AEBP1 WILD-TYPE 54 39 25
'AEBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S80.  Gene #8: 'AEBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
AEBP1 MUTATED 11 10 5
AEBP1 WILD-TYPE 64 35 19
'RBM47 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S81.  Gene #9: 'RBM47 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
RBM47 MUTATED 14 10 0
RBM47 WILD-TYPE 52 55 14
'RBM47 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S82.  Gene #9: 'RBM47 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
RBM47 MUTATED 5 6 7 7
RBM47 WILD-TYPE 33 23 38 27
'RBM47 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S83.  Gene #9: 'RBM47 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
RBM47 MUTATED 5 3 2 3 0
RBM47 WILD-TYPE 29 13 9 8 13
'RBM47 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S84.  Gene #9: 'RBM47 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
RBM47 MUTATED 3 3 3 1 1 1 1
RBM47 WILD-TYPE 9 14 18 8 5 13 5
'RBM47 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S85.  Gene #9: 'RBM47 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
RBM47 MUTATED 11 7 7
RBM47 WILD-TYPE 60 36 25
'RBM47 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S86.  Gene #9: 'RBM47 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
RBM47 MUTATED 12 10 3
RBM47 WILD-TYPE 55 53 13
'RBM47 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S87.  Gene #9: 'RBM47 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
RBM47 MUTATED 10 7 3 5
RBM47 WILD-TYPE 52 29 25 15
'RBM47 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S88.  Gene #9: 'RBM47 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
RBM47 MUTATED 15 6 4
RBM47 WILD-TYPE 74 29 18
'RBM47 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S89.  Gene #9: 'RBM47 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
RBM47 MUTATED 13 8 4
RBM47 WILD-TYPE 49 43 27
'RBM47 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S90.  Gene #9: 'RBM47 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
RBM47 MUTATED 12 9 4
RBM47 WILD-TYPE 63 36 20
'ANKRD36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S91.  Gene #10: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
ANKRD36 MUTATED 13 10 1
ANKRD36 WILD-TYPE 53 55 13
'ANKRD36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S92.  Gene #10: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
ANKRD36 MUTATED 6 6 7 5
ANKRD36 WILD-TYPE 32 23 38 29
'ANKRD36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S93.  Gene #10: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
ANKRD36 MUTATED 10 4 2 0 1
ANKRD36 WILD-TYPE 24 12 9 11 12
'ANKRD36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S94.  Gene #10: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
ANKRD36 MUTATED 4 4 6 2 0 0 1
ANKRD36 WILD-TYPE 8 13 15 7 6 14 5
'ANKRD36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S95.  Gene #10: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
ANKRD36 MUTATED 8 8 8
ANKRD36 WILD-TYPE 63 35 24
'ANKRD36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S96.  Gene #10: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
ANKRD36 MUTATED 11 8 5
ANKRD36 WILD-TYPE 56 55 11
'ANKRD36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S97.  Gene #10: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
ANKRD36 MUTATED 11 4 4 5
ANKRD36 WILD-TYPE 51 32 24 15
'ANKRD36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S98.  Gene #10: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
ANKRD36 MUTATED 12 6 6
ANKRD36 WILD-TYPE 77 29 16
'ANKRD36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S99.  Gene #10: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
ANKRD36 MUTATED 8 9 6
ANKRD36 WILD-TYPE 54 42 25
'ANKRD36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S100.  Gene #10: 'ANKRD36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
ANKRD36 MUTATED 10 8 5
ANKRD36 WILD-TYPE 65 37 19
'RFX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S101.  Gene #11: 'RFX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
RFX1 MUTATED 10 13 1
RFX1 WILD-TYPE 56 52 13
'RFX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S102.  Gene #11: 'RFX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
RFX1 MUTATED 7 7 3 7
RFX1 WILD-TYPE 31 22 42 27
'RFX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S103.  Gene #11: 'RFX1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
RFX1 MUTATED 2 4 2 2 3
RFX1 WILD-TYPE 32 12 9 9 10
'RFX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S104.  Gene #11: 'RFX1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
RFX1 MUTATED 1 5 2 1 0 3 1
RFX1 WILD-TYPE 11 12 19 8 6 11 5
'RFX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S105.  Gene #11: 'RFX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
RFX1 MUTATED 13 9 2
RFX1 WILD-TYPE 58 34 30
'RFX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S106.  Gene #11: 'RFX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
RFX1 MUTATED 13 10 1
RFX1 WILD-TYPE 54 53 15
'RFX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S107.  Gene #11: 'RFX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
RFX1 MUTATED 11 8 3 2
RFX1 WILD-TYPE 51 28 25 18
'RFX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S108.  Gene #11: 'RFX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
RFX1 MUTATED 15 8 1
RFX1 WILD-TYPE 74 27 21
'RFX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0798 (Fisher's exact test), Q value = 1

Table S109.  Gene #11: 'RFX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
RFX1 MUTATED 15 7 2
RFX1 WILD-TYPE 47 44 29
'RFX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S110.  Gene #11: 'RFX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
RFX1 MUTATED 11 11 2
RFX1 WILD-TYPE 64 34 22
'TYRO3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S111.  Gene #12: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
TYRO3 MUTATED 4 8 1
TYRO3 WILD-TYPE 62 57 13
'TYRO3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S112.  Gene #12: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
TYRO3 MUTATED 3 5 4 2
TYRO3 WILD-TYPE 35 24 41 32
'TYRO3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S113.  Gene #12: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
TYRO3 MUTATED 4 2 1 1 0
TYRO3 WILD-TYPE 30 14 10 10 13
'TYRO3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S114.  Gene #12: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
TYRO3 MUTATED 0 2 2 1 0 2 1
TYRO3 WILD-TYPE 12 15 19 8 6 12 5
'TYRO3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0632 (Fisher's exact test), Q value = 1

Table S115.  Gene #12: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
TYRO3 MUTATED 5 8 1
TYRO3 WILD-TYPE 66 35 31
'TYRO3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S116.  Gene #12: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
TYRO3 MUTATED 8 5 1
TYRO3 WILD-TYPE 59 58 15
'TYRO3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S117.  Gene #12: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
TYRO3 MUTATED 5 6 2 1
TYRO3 WILD-TYPE 57 30 26 19
'TYRO3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S118.  Gene #12: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
TYRO3 MUTATED 9 5 0
TYRO3 WILD-TYPE 80 30 22
'TYRO3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S119.  Gene #12: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
TYRO3 MUTATED 5 5 4
TYRO3 WILD-TYPE 57 46 27
'TYRO3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S120.  Gene #12: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
TYRO3 MUTATED 9 5 0
TYRO3 WILD-TYPE 66 40 24
'SMAD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0892 (Fisher's exact test), Q value = 1

Table S121.  Gene #13: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
SMAD4 MUTATED 17 15 0
SMAD4 WILD-TYPE 49 50 14
'SMAD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S122.  Gene #13: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
SMAD4 MUTATED 10 4 12 6
SMAD4 WILD-TYPE 28 25 33 28
'SMAD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0868 (Fisher's exact test), Q value = 1

Table S123.  Gene #13: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
SMAD4 MUTATED 9 3 5 2 0
SMAD4 WILD-TYPE 25 13 6 9 13
'SMAD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S124.  Gene #13: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
SMAD4 MUTATED 5 3 5 4 0 1 1
SMAD4 WILD-TYPE 7 14 16 5 6 13 5
'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S125.  Gene #13: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
SMAD4 MUTATED 17 12 3
SMAD4 WILD-TYPE 54 31 29
'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0617 (Fisher's exact test), Q value = 1

Table S126.  Gene #13: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
SMAD4 MUTATED 17 15 0
SMAD4 WILD-TYPE 50 48 16
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S127.  Gene #13: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
SMAD4 MUTATED 15 10 5 2
SMAD4 WILD-TYPE 47 26 23 18
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S128.  Gene #13: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
SMAD4 MUTATED 21 9 2
SMAD4 WILD-TYPE 68 26 20
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S129.  Gene #13: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
SMAD4 MUTATED 16 8 8
SMAD4 WILD-TYPE 46 43 23
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S130.  Gene #13: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
SMAD4 MUTATED 18 12 2
SMAD4 WILD-TYPE 57 33 22
'GPR6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S131.  Gene #14: 'GPR6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
GPR6 MUTATED 8 4 0
GPR6 WILD-TYPE 58 61 14
'GPR6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S132.  Gene #14: 'GPR6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
GPR6 MUTATED 3 3 2 4
GPR6 WILD-TYPE 35 26 43 30
'GPR6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S133.  Gene #14: 'GPR6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
GPR6 MUTATED 5 0 1 1 0
GPR6 WILD-TYPE 29 16 10 10 13
'GPR6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00967 (Fisher's exact test), Q value = 1

Table S134.  Gene #14: 'GPR6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
GPR6 MUTATED 2 0 2 0 0 0 3
GPR6 WILD-TYPE 10 17 19 9 6 14 3

Figure S8.  Get High-res Image Gene #14: 'GPR6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPR6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S135.  Gene #14: 'GPR6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
GPR6 MUTATED 5 6 1
GPR6 WILD-TYPE 66 37 31
'GPR6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S136.  Gene #14: 'GPR6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
GPR6 MUTATED 7 4 1
GPR6 WILD-TYPE 60 59 15
'GPR6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S137.  Gene #14: 'GPR6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
GPR6 MUTATED 4 5 2 1
GPR6 WILD-TYPE 58 31 26 19
'GPR6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S138.  Gene #14: 'GPR6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
GPR6 MUTATED 7 4 1
GPR6 WILD-TYPE 82 31 21
'GPR6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S139.  Gene #14: 'GPR6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
GPR6 MUTATED 5 5 2
GPR6 WILD-TYPE 57 46 29
'GPR6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S140.  Gene #14: 'GPR6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
GPR6 MUTATED 5 5 2
GPR6 WILD-TYPE 70 40 22
'LZTS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S141.  Gene #15: 'LZTS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
LZTS1 MUTATED 5 5 0
LZTS1 WILD-TYPE 61 60 14
'LZTS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S142.  Gene #15: 'LZTS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
LZTS1 MUTATED 4 2 2 2
LZTS1 WILD-TYPE 34 27 43 32
'LZTS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S143.  Gene #15: 'LZTS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
LZTS1 MUTATED 1 0 1 0 1
LZTS1 WILD-TYPE 33 16 10 11 12
'LZTS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0031 (Fisher's exact test), Q value = 1

Table S144.  Gene #15: 'LZTS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
LZTS1 MUTATED 0 0 0 0 1 0 2
LZTS1 WILD-TYPE 12 17 21 9 5 14 4

Figure S9.  Get High-res Image Gene #15: 'LZTS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LZTS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S145.  Gene #15: 'LZTS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
LZTS1 MUTATED 4 3 3
LZTS1 WILD-TYPE 67 40 29
'LZTS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S146.  Gene #15: 'LZTS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
LZTS1 MUTATED 5 3 2
LZTS1 WILD-TYPE 62 60 14
'LZTS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S147.  Gene #15: 'LZTS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
LZTS1 MUTATED 2 3 3 2
LZTS1 WILD-TYPE 60 33 25 18
'LZTS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S148.  Gene #15: 'LZTS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
LZTS1 MUTATED 6 2 2
LZTS1 WILD-TYPE 83 33 20
'LZTS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0428 (Fisher's exact test), Q value = 1

Table S149.  Gene #15: 'LZTS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
LZTS1 MUTATED 3 7 0
LZTS1 WILD-TYPE 59 44 31

Figure S10.  Get High-res Image Gene #15: 'LZTS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'LZTS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S150.  Gene #15: 'LZTS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
LZTS1 MUTATED 4 4 2
LZTS1 WILD-TYPE 71 41 22
'NCOA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S151.  Gene #16: 'NCOA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
NCOA3 MUTATED 6 6 2
NCOA3 WILD-TYPE 60 59 12
'NCOA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S152.  Gene #16: 'NCOA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
NCOA3 MUTATED 5 4 4 1
NCOA3 WILD-TYPE 33 25 41 33
'NCOA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S153.  Gene #16: 'NCOA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
NCOA3 MUTATED 5 2 1 0 0
NCOA3 WILD-TYPE 29 14 10 11 13
'NCOA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0301 (Fisher's exact test), Q value = 1

Table S154.  Gene #16: 'NCOA3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
NCOA3 MUTATED 2 2 1 0 0 0 3
NCOA3 WILD-TYPE 10 15 20 9 6 14 3

Figure S11.  Get High-res Image Gene #16: 'NCOA3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NCOA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S155.  Gene #16: 'NCOA3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
NCOA3 MUTATED 6 7 1
NCOA3 WILD-TYPE 65 36 31
'NCOA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S156.  Gene #16: 'NCOA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
NCOA3 MUTATED 8 6 0
NCOA3 WILD-TYPE 59 57 16
'NCOA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S157.  Gene #16: 'NCOA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
NCOA3 MUTATED 6 5 2 1
NCOA3 WILD-TYPE 56 31 26 19
'NCOA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S158.  Gene #16: 'NCOA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
NCOA3 MUTATED 9 5 0
NCOA3 WILD-TYPE 80 30 22
'NCOA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S159.  Gene #16: 'NCOA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
NCOA3 MUTATED 6 4 4
NCOA3 WILD-TYPE 56 47 27
'NCOA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S160.  Gene #16: 'NCOA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
NCOA3 MUTATED 8 6 0
NCOA3 WILD-TYPE 67 39 24
'SIK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S161.  Gene #17: 'SIK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
SIK3 MUTATED 8 3 1
SIK3 WILD-TYPE 58 62 13
'SIK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S162.  Gene #17: 'SIK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
SIK3 MUTATED 3 5 2 3
SIK3 WILD-TYPE 35 24 43 31
'SIK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S163.  Gene #17: 'SIK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
SIK3 MUTATED 4 1 1 3 1
SIK3 WILD-TYPE 30 15 10 8 12
'SIK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S164.  Gene #17: 'SIK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
SIK3 MUTATED 1 1 3 1 1 2 1
SIK3 WILD-TYPE 11 16 18 8 5 12 5
'SIK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0715 (Fisher's exact test), Q value = 1

Table S165.  Gene #17: 'SIK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
SIK3 MUTATED 3 7 3
SIK3 WILD-TYPE 68 36 29
'SIK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S166.  Gene #17: 'SIK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
SIK3 MUTATED 9 3 1
SIK3 WILD-TYPE 58 60 15
'SIK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 1

Table S167.  Gene #17: 'SIK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
SIK3 MUTATED 1 7 3 2
SIK3 WILD-TYPE 61 29 25 18

Figure S12.  Get High-res Image Gene #17: 'SIK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SIK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S168.  Gene #17: 'SIK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
SIK3 MUTATED 6 6 1
SIK3 WILD-TYPE 83 29 21
'SIK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S169.  Gene #17: 'SIK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
SIK3 MUTATED 3 7 3
SIK3 WILD-TYPE 59 44 28
'SIK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S170.  Gene #17: 'SIK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
SIK3 MUTATED 4 7 2
SIK3 WILD-TYPE 71 38 22
'ZMIZ2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S171.  Gene #18: 'ZMIZ2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
ZMIZ2 MUTATED 4 7 1
ZMIZ2 WILD-TYPE 62 58 13
'ZMIZ2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S172.  Gene #18: 'ZMIZ2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
ZMIZ2 MUTATED 5 1 4 2
ZMIZ2 WILD-TYPE 33 28 41 32
'ZMIZ2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S173.  Gene #18: 'ZMIZ2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
ZMIZ2 MUTATED 3 3 3 1 1
ZMIZ2 WILD-TYPE 31 13 8 10 12
'ZMIZ2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S174.  Gene #18: 'ZMIZ2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
ZMIZ2 MUTATED 0 3 2 2 0 3 1
ZMIZ2 WILD-TYPE 12 14 19 7 6 11 5
'ZMIZ2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S175.  Gene #18: 'ZMIZ2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
ZMIZ2 MUTATED 7 4 1
ZMIZ2 WILD-TYPE 64 39 31
'ZMIZ2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S176.  Gene #18: 'ZMIZ2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
ZMIZ2 MUTATED 7 4 1
ZMIZ2 WILD-TYPE 60 59 15
'ZMIZ2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S177.  Gene #18: 'ZMIZ2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
ZMIZ2 MUTATED 7 3 1 1
ZMIZ2 WILD-TYPE 55 33 27 19
'ZMIZ2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S178.  Gene #18: 'ZMIZ2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
ZMIZ2 MUTATED 9 2 1
ZMIZ2 WILD-TYPE 80 33 21
'ZMIZ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S179.  Gene #18: 'ZMIZ2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
ZMIZ2 MUTATED 7 2 3
ZMIZ2 WILD-TYPE 55 49 28
'ZMIZ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S180.  Gene #18: 'ZMIZ2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
ZMIZ2 MUTATED 7 4 1
ZMIZ2 WILD-TYPE 68 41 23
'IRS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S181.  Gene #19: 'IRS4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
IRS4 MUTATED 9 6 1
IRS4 WILD-TYPE 57 59 13
'IRS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S182.  Gene #19: 'IRS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
IRS4 MUTATED 4 6 2 4
IRS4 WILD-TYPE 34 23 43 30
'IRS4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S183.  Gene #19: 'IRS4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
IRS4 MUTATED 3 0 2 0 2
IRS4 WILD-TYPE 31 16 9 11 11
'IRS4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S184.  Gene #19: 'IRS4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
IRS4 MUTATED 2 1 0 1 0 1 2
IRS4 WILD-TYPE 10 16 21 8 6 13 4
'IRS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S185.  Gene #19: 'IRS4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
IRS4 MUTATED 7 6 3
IRS4 WILD-TYPE 64 37 29
'IRS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S186.  Gene #19: 'IRS4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
IRS4 MUTATED 8 7 1
IRS4 WILD-TYPE 59 56 15
'IRS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S187.  Gene #19: 'IRS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
IRS4 MUTATED 6 6 3 1
IRS4 WILD-TYPE 56 30 25 19
'IRS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S188.  Gene #19: 'IRS4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
IRS4 MUTATED 9 6 1
IRS4 WILD-TYPE 80 29 21
'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S189.  Gene #19: 'IRS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
IRS4 MUTATED 7 6 3
IRS4 WILD-TYPE 55 45 28
'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S190.  Gene #19: 'IRS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
IRS4 MUTATED 7 7 2
IRS4 WILD-TYPE 68 38 22
'ESPN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S191.  Gene #20: 'ESPN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
ESPN MUTATED 4 2 0
ESPN WILD-TYPE 62 63 14
'ESPN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S192.  Gene #20: 'ESPN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
ESPN MUTATED 1 2 2 1
ESPN WILD-TYPE 37 27 43 33
'ESPN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S193.  Gene #20: 'ESPN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
ESPN MUTATED 2 2 2
ESPN WILD-TYPE 69 41 30
'ESPN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S194.  Gene #20: 'ESPN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
ESPN MUTATED 2 4 0
ESPN WILD-TYPE 65 59 16
'ESPN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S195.  Gene #20: 'ESPN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
ESPN MUTATED 2 2 1 1
ESPN WILD-TYPE 60 34 27 19
'ESPN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S196.  Gene #20: 'ESPN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
ESPN MUTATED 3 2 1
ESPN WILD-TYPE 86 33 21
'ESPN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S197.  Gene #20: 'ESPN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
ESPN MUTATED 2 1 3
ESPN WILD-TYPE 60 50 28
'ESPN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S198.  Gene #20: 'ESPN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
ESPN MUTATED 3 2 1
ESPN WILD-TYPE 72 43 23
'ATP2C1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S199.  Gene #21: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
ATP2C1 MUTATED 6 2 0
ATP2C1 WILD-TYPE 60 63 14
'ATP2C1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S200.  Gene #21: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
ATP2C1 MUTATED 3 2 2 1
ATP2C1 WILD-TYPE 35 27 43 33
'ATP2C1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0482 (Fisher's exact test), Q value = 1

Table S201.  Gene #21: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
ATP2C1 MUTATED 1 4 1 0 0
ATP2C1 WILD-TYPE 33 12 10 11 13

Figure S13.  Get High-res Image Gene #21: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ATP2C1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0724 (Fisher's exact test), Q value = 1

Table S202.  Gene #21: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
ATP2C1 MUTATED 0 3 1 0 0 0 2
ATP2C1 WILD-TYPE 12 14 20 9 6 14 4
'ATP2C1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S203.  Gene #21: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
ATP2C1 MUTATED 5 3 0
ATP2C1 WILD-TYPE 66 40 32
'ATP2C1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S204.  Gene #21: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
ATP2C1 MUTATED 4 4 0
ATP2C1 WILD-TYPE 63 59 16
'ATP2C1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S205.  Gene #21: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
ATP2C1 MUTATED 3 2 2 1
ATP2C1 WILD-TYPE 59 34 26 19
'ATP2C1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S206.  Gene #21: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
ATP2C1 MUTATED 6 2 0
ATP2C1 WILD-TYPE 83 33 22
'ATP2C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S207.  Gene #21: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
ATP2C1 MUTATED 4 4 0
ATP2C1 WILD-TYPE 58 47 31
'ATP2C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S208.  Gene #21: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
ATP2C1 MUTATED 4 4 0
ATP2C1 WILD-TYPE 71 41 24
'FNDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S209.  Gene #22: 'FNDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
FNDC1 MUTATED 8 5 1
FNDC1 WILD-TYPE 58 60 13
'FNDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S210.  Gene #22: 'FNDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
FNDC1 MUTATED 2 4 5 3
FNDC1 WILD-TYPE 36 25 40 31
'FNDC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S211.  Gene #22: 'FNDC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
FNDC1 MUTATED 4 1 2 2 0
FNDC1 WILD-TYPE 30 15 9 9 13
'FNDC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S212.  Gene #22: 'FNDC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
FNDC1 MUTATED 1 1 2 1 1 1 2
FNDC1 WILD-TYPE 11 16 19 8 5 13 4
'FNDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S213.  Gene #22: 'FNDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
FNDC1 MUTATED 5 4 5
FNDC1 WILD-TYPE 66 39 27
'FNDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S214.  Gene #22: 'FNDC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
FNDC1 MUTATED 7 6 1
FNDC1 WILD-TYPE 60 57 15
'FNDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0674 (Fisher's exact test), Q value = 1

Table S215.  Gene #22: 'FNDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
FNDC1 MUTATED 2 4 5 3
FNDC1 WILD-TYPE 60 32 23 17
'FNDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S216.  Gene #22: 'FNDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
FNDC1 MUTATED 9 4 1
FNDC1 WILD-TYPE 80 31 21
'FNDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S217.  Gene #22: 'FNDC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
FNDC1 MUTATED 3 7 4
FNDC1 WILD-TYPE 59 44 27
'FNDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S218.  Gene #22: 'FNDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
FNDC1 MUTATED 7 4 3
FNDC1 WILD-TYPE 68 41 21
'TMEM91 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S219.  Gene #23: 'TMEM91 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
TMEM91 MUTATED 4 1 0
TMEM91 WILD-TYPE 62 64 14
'TMEM91 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S220.  Gene #23: 'TMEM91 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
TMEM91 MUTATED 1 1 2 2
TMEM91 WILD-TYPE 37 28 43 32
'TMEM91 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S221.  Gene #23: 'TMEM91 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
TMEM91 MUTATED 1 0 2 1 0
TMEM91 WILD-TYPE 33 16 9 10 13
'TMEM91 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S222.  Gene #23: 'TMEM91 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
TMEM91 MUTATED 0 0 2 1 0 0 1
TMEM91 WILD-TYPE 12 17 19 8 6 14 5
'TMEM91 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S223.  Gene #23: 'TMEM91 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
TMEM91 MUTATED 2 3 1
TMEM91 WILD-TYPE 69 40 31
'TMEM91 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S224.  Gene #23: 'TMEM91 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
TMEM91 MUTATED 4 1 1
TMEM91 WILD-TYPE 63 62 15
'TMEM91 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0814 (Fisher's exact test), Q value = 1

Table S225.  Gene #23: 'TMEM91 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
TMEM91 MUTATED 1 4 0 1
TMEM91 WILD-TYPE 61 32 28 19
'TMEM91 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S226.  Gene #23: 'TMEM91 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
TMEM91 MUTATED 3 2 1
TMEM91 WILD-TYPE 86 33 21
'TMEM91 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S227.  Gene #23: 'TMEM91 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
TMEM91 MUTATED 3 3 0
TMEM91 WILD-TYPE 59 48 31
'TMEM91 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S228.  Gene #23: 'TMEM91 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
TMEM91 MUTATED 1 4 1
TMEM91 WILD-TYPE 74 41 23
'SHROOM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S229.  Gene #24: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
SHROOM4 MUTATED 7 4 0
SHROOM4 WILD-TYPE 59 61 14
'SHROOM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S230.  Gene #24: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
SHROOM4 MUTATED 2 1 4 4
SHROOM4 WILD-TYPE 36 28 41 30
'SHROOM4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0329 (Fisher's exact test), Q value = 1

Table S231.  Gene #24: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
SHROOM4 MUTATED 1 0 2 3 1
SHROOM4 WILD-TYPE 33 16 9 8 12

Figure S14.  Get High-res Image Gene #24: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SHROOM4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S232.  Gene #24: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
SHROOM4 MUTATED 0 0 3 1 1 1 1
SHROOM4 WILD-TYPE 12 17 18 8 5 13 5
'SHROOM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S233.  Gene #24: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
SHROOM4 MUTATED 4 2 5
SHROOM4 WILD-TYPE 67 41 27
'SHROOM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0248 (Fisher's exact test), Q value = 1

Table S234.  Gene #24: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
SHROOM4 MUTATED 5 2 4
SHROOM4 WILD-TYPE 62 61 12

Figure S15.  Get High-res Image Gene #24: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SHROOM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S235.  Gene #24: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
SHROOM4 MUTATED 2 4 2 3
SHROOM4 WILD-TYPE 60 32 26 17
'SHROOM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S236.  Gene #24: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
SHROOM4 MUTATED 5 2 4
SHROOM4 WILD-TYPE 84 33 18
'SHROOM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S237.  Gene #24: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
SHROOM4 MUTATED 5 6 0
SHROOM4 WILD-TYPE 57 45 31
'SHROOM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0134 (Fisher's exact test), Q value = 1

Table S238.  Gene #24: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
SHROOM4 MUTATED 2 4 5
SHROOM4 WILD-TYPE 73 41 19

Figure S16.  Get High-res Image Gene #24: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PABPC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S239.  Gene #25: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
PABPC1 MUTATED 2 5 2
PABPC1 WILD-TYPE 64 60 12
'PABPC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S240.  Gene #25: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
PABPC1 MUTATED 2 3 3 1
PABPC1 WILD-TYPE 36 26 42 33
'PABPC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S241.  Gene #25: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
PABPC1 MUTATED 3 1 0 0 1
PABPC1 WILD-TYPE 31 15 11 11 12
'PABPC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S242.  Gene #25: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
PABPC1 MUTATED 1 1 1 0 0 1 1
PABPC1 WILD-TYPE 11 16 20 9 6 13 5
'PABPC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S243.  Gene #25: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
PABPC1 MUTATED 3 5 1
PABPC1 WILD-TYPE 68 38 31
'PABPC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S244.  Gene #25: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
PABPC1 MUTATED 5 3 1
PABPC1 WILD-TYPE 62 60 15
'PABPC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S245.  Gene #25: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
PABPC1 MUTATED 5 2 1 1
PABPC1 WILD-TYPE 57 34 27 19
'PABPC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S246.  Gene #25: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
PABPC1 MUTATED 5 3 1
PABPC1 WILD-TYPE 84 32 21
'PABPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S247.  Gene #25: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
PABPC1 MUTATED 3 2 4
PABPC1 WILD-TYPE 59 49 27
'PABPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S248.  Gene #25: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
PABPC1 MUTATED 4 5 0
PABPC1 WILD-TYPE 71 40 24
'OGFOD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S249.  Gene #26: 'OGFOD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
OGFOD1 MUTATED 3 2 0
OGFOD1 WILD-TYPE 63 63 14
'OGFOD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S250.  Gene #26: 'OGFOD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
OGFOD1 MUTATED 0 1 2 2
OGFOD1 WILD-TYPE 38 28 43 32
'OGFOD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S251.  Gene #26: 'OGFOD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
OGFOD1 MUTATED 0 1 1 1 0
OGFOD1 WILD-TYPE 34 15 10 10 13
'OGFOD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S252.  Gene #26: 'OGFOD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
OGFOD1 MUTATED 0 1 0 1 0 1 0
OGFOD1 WILD-TYPE 12 16 21 8 6 13 6
'OGFOD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0813 (Fisher's exact test), Q value = 1

Table S253.  Gene #26: 'OGFOD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
OGFOD1 MUTATED 2 0 3
OGFOD1 WILD-TYPE 69 43 29
'OGFOD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S254.  Gene #26: 'OGFOD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
OGFOD1 MUTATED 1 2 2
OGFOD1 WILD-TYPE 66 61 14
'OGFOD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S255.  Gene #26: 'OGFOD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
OGFOD1 MUTATED 2 1 0 2
OGFOD1 WILD-TYPE 60 35 28 18
'OGFOD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S256.  Gene #26: 'OGFOD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
OGFOD1 MUTATED 2 1 2
OGFOD1 WILD-TYPE 87 34 20
'OGFOD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S257.  Gene #26: 'OGFOD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
OGFOD1 MUTATED 2 3 0
OGFOD1 WILD-TYPE 60 48 31
'OGFOD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S258.  Gene #26: 'OGFOD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
OGFOD1 MUTATED 2 1 2
OGFOD1 WILD-TYPE 73 44 22
'DCP1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S259.  Gene #27: 'DCP1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
DCP1B MUTATED 5 4 0
DCP1B WILD-TYPE 61 61 14
'DCP1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S260.  Gene #27: 'DCP1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
DCP1B MUTATED 3 4 1 1
DCP1B WILD-TYPE 35 25 44 33
'DCP1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0708 (Fisher's exact test), Q value = 1

Table S261.  Gene #27: 'DCP1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
DCP1B MUTATED 2 0 3 0 0
DCP1B WILD-TYPE 32 16 8 11 13
'DCP1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S262.  Gene #27: 'DCP1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
DCP1B MUTATED 1 0 1 2 0 0 1
DCP1B WILD-TYPE 11 17 20 7 6 14 5
'DCP1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S263.  Gene #27: 'DCP1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
DCP1B MUTATED 2 4 3
DCP1B WILD-TYPE 69 39 29
'DCP1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S264.  Gene #27: 'DCP1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
DCP1B MUTATED 6 2 1
DCP1B WILD-TYPE 61 61 15
'DCP1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0285 (Fisher's exact test), Q value = 1

Table S265.  Gene #27: 'DCP1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
DCP1B MUTATED 2 6 0 1
DCP1B WILD-TYPE 60 30 28 19

Figure S17.  Get High-res Image Gene #27: 'DCP1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DCP1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0824 (Fisher's exact test), Q value = 1

Table S266.  Gene #27: 'DCP1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
DCP1B MUTATED 3 5 1
DCP1B WILD-TYPE 86 30 21
'DCP1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S267.  Gene #27: 'DCP1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
DCP1B MUTATED 3 3 3
DCP1B WILD-TYPE 59 48 28
'DCP1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0575 (Fisher's exact test), Q value = 1

Table S268.  Gene #27: 'DCP1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
DCP1B MUTATED 2 6 1
DCP1B WILD-TYPE 73 39 23
'RBMX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0773 (Fisher's exact test), Q value = 1

Table S269.  Gene #28: 'RBMX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
RBMX MUTATED 0 4 1
RBMX WILD-TYPE 66 61 13
'RBMX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S270.  Gene #28: 'RBMX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
RBMX MUTATED 1 1 3 0
RBMX WILD-TYPE 37 28 42 34
'RBMX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S271.  Gene #28: 'RBMX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
RBMX MUTATED 2 2 1
RBMX WILD-TYPE 69 41 31
'RBMX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S272.  Gene #28: 'RBMX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
RBMX MUTATED 3 2 0
RBMX WILD-TYPE 64 61 16
'RBMX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S273.  Gene #28: 'RBMX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
RBMX MUTATED 4 1 0 0
RBMX WILD-TYPE 58 35 28 20
'RBMX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S274.  Gene #28: 'RBMX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
RBMX MUTATED 5 0 0
RBMX WILD-TYPE 84 35 22
'RBMX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S275.  Gene #28: 'RBMX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
RBMX MUTATED 3 1 1
RBMX WILD-TYPE 59 50 30
'RBMX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S276.  Gene #28: 'RBMX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
RBMX MUTATED 5 0 0
RBMX WILD-TYPE 70 45 24
'ZNF880 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S277.  Gene #29: 'ZNF880 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
ZNF880 MUTATED 2 2 0
ZNF880 WILD-TYPE 64 63 14
'ZNF880 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S278.  Gene #29: 'ZNF880 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
ZNF880 MUTATED 0 1 2 1
ZNF880 WILD-TYPE 38 28 43 33
'ZNF880 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S279.  Gene #29: 'ZNF880 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
ZNF880 MUTATED 2 1 1
ZNF880 WILD-TYPE 69 42 31
'ZNF880 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S280.  Gene #29: 'ZNF880 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
ZNF880 MUTATED 2 1 1
ZNF880 WILD-TYPE 65 62 15
'ZNF880 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S281.  Gene #29: 'ZNF880 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
ZNF880 MUTATED 1 2 0 1
ZNF880 WILD-TYPE 61 34 28 19
'ZNF880 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S282.  Gene #29: 'ZNF880 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
ZNF880 MUTATED 2 1 1
ZNF880 WILD-TYPE 87 34 21
'ZNF880 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S283.  Gene #29: 'ZNF880 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
ZNF880 MUTATED 2 1 1
ZNF880 WILD-TYPE 60 50 30
'ZNF880 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S284.  Gene #29: 'ZNF880 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
ZNF880 MUTATED 1 2 1
ZNF880 WILD-TYPE 74 43 23
'UBAC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S285.  Gene #30: 'UBAC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
UBAC1 MUTATED 1 3 1
UBAC1 WILD-TYPE 65 62 13
'UBAC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S286.  Gene #30: 'UBAC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
UBAC1 MUTATED 3 0 1 1
UBAC1 WILD-TYPE 35 29 44 33
'UBAC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S287.  Gene #30: 'UBAC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
UBAC1 MUTATED 2 1 0 0 1
UBAC1 WILD-TYPE 32 15 11 11 12
'UBAC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.97 (Fisher's exact test), Q value = 1

Table S288.  Gene #30: 'UBAC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
UBAC1 MUTATED 0 1 2 0 0 1 0
UBAC1 WILD-TYPE 12 16 19 9 6 13 6
'UBAC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S289.  Gene #30: 'UBAC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
UBAC1 MUTATED 5 0 0
UBAC1 WILD-TYPE 66 43 32
'UBAC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S290.  Gene #30: 'UBAC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
UBAC1 MUTATED 3 2 0
UBAC1 WILD-TYPE 64 61 16
'UBAC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S291.  Gene #30: 'UBAC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
UBAC1 MUTATED 2 1 2 0
UBAC1 WILD-TYPE 60 35 26 20
'UBAC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S292.  Gene #30: 'UBAC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
UBAC1 MUTATED 5 0 0
UBAC1 WILD-TYPE 84 35 22
'UBAC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S293.  Gene #30: 'UBAC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
UBAC1 MUTATED 3 1 0
UBAC1 WILD-TYPE 59 50 31
'UBAC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S294.  Gene #30: 'UBAC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
UBAC1 MUTATED 2 2 0
UBAC1 WILD-TYPE 73 43 24
'CASQ2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S295.  Gene #31: 'CASQ2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
CASQ2 MUTATED 4 3 1
CASQ2 WILD-TYPE 62 62 13
'CASQ2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S296.  Gene #31: 'CASQ2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
CASQ2 MUTATED 1 2 2 3
CASQ2 WILD-TYPE 37 27 43 31
'CASQ2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0885 (Fisher's exact test), Q value = 1

Table S297.  Gene #31: 'CASQ2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
CASQ2 MUTATED 1 0 1 0 3
CASQ2 WILD-TYPE 33 16 10 11 10
'CASQ2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0731 (Fisher's exact test), Q value = 1

Table S298.  Gene #31: 'CASQ2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
CASQ2 MUTATED 0 0 0 1 1 2 1
CASQ2 WILD-TYPE 12 17 21 8 5 12 5
'CASQ2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S299.  Gene #31: 'CASQ2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
CASQ2 MUTATED 4 2 2
CASQ2 WILD-TYPE 67 41 30
'CASQ2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S300.  Gene #31: 'CASQ2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
CASQ2 MUTATED 2 4 2
CASQ2 WILD-TYPE 65 59 14
'CASQ2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S301.  Gene #31: 'CASQ2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
CASQ2 MUTATED 3 2 2 1
CASQ2 WILD-TYPE 59 34 26 19
'CASQ2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S302.  Gene #31: 'CASQ2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
CASQ2 MUTATED 4 2 2
CASQ2 WILD-TYPE 85 33 20
'CASQ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S303.  Gene #31: 'CASQ2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
CASQ2 MUTATED 3 3 2
CASQ2 WILD-TYPE 59 48 29
'CASQ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S304.  Gene #31: 'CASQ2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
CASQ2 MUTATED 3 3 2
CASQ2 WILD-TYPE 72 42 22
'ZNF678 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0949 (Fisher's exact test), Q value = 1

Table S305.  Gene #32: 'ZNF678 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
ZNF678 MUTATED 4 0 1
ZNF678 WILD-TYPE 62 65 13
'ZNF678 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S306.  Gene #32: 'ZNF678 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
ZNF678 MUTATED 2 2 0 1
ZNF678 WILD-TYPE 36 27 45 33
'ZNF678 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S307.  Gene #32: 'ZNF678 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
ZNF678 MUTATED 0 2 1 1 1
ZNF678 WILD-TYPE 34 14 10 10 12
'ZNF678 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S308.  Gene #32: 'ZNF678 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
ZNF678 MUTATED 0 2 0 0 0 2 1
ZNF678 WILD-TYPE 12 15 21 9 6 12 5
'ZNF678 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S309.  Gene #32: 'ZNF678 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
ZNF678 MUTATED 2 2 1
ZNF678 WILD-TYPE 69 41 31
'ZNF678 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S310.  Gene #32: 'ZNF678 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
ZNF678 MUTATED 3 2 0
ZNF678 WILD-TYPE 64 61 16
'ZNF678 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 1

Table S311.  Gene #32: 'ZNF678 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
ZNF678 MUTATED 0 2 3 0
ZNF678 WILD-TYPE 62 34 25 20

Figure S18.  Get High-res Image Gene #32: 'ZNF678 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF678 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S312.  Gene #32: 'ZNF678 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
ZNF678 MUTATED 3 2 0
ZNF678 WILD-TYPE 86 33 22
'ZNF678 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S313.  Gene #32: 'ZNF678 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
ZNF678 MUTATED 1 3 0
ZNF678 WILD-TYPE 61 48 31
'ZNF678 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S314.  Gene #32: 'ZNF678 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
ZNF678 MUTATED 1 2 1
ZNF678 WILD-TYPE 74 43 23
'RBM12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S315.  Gene #33: 'RBM12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
RBM12 MUTATED 2 3 0
RBM12 WILD-TYPE 64 62 14
'RBM12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S316.  Gene #33: 'RBM12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
RBM12 MUTATED 0 0 4 1
RBM12 WILD-TYPE 38 29 41 33
'RBM12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S317.  Gene #33: 'RBM12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
RBM12 MUTATED 2 1 0 0 1
RBM12 WILD-TYPE 32 15 11 11 12
'RBM12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S318.  Gene #33: 'RBM12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
RBM12 MUTATED 0 1 1 0 0 1 1
RBM12 WILD-TYPE 12 16 20 9 6 13 5
'RBM12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S319.  Gene #33: 'RBM12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
RBM12 MUTATED 5 0 0
RBM12 WILD-TYPE 66 43 32
'RBM12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S320.  Gene #33: 'RBM12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
RBM12 MUTATED 2 3 0
RBM12 WILD-TYPE 65 60 16
'RBM12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S321.  Gene #33: 'RBM12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
RBM12 MUTATED 4 0 1 0
RBM12 WILD-TYPE 58 36 27 20
'RBM12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S322.  Gene #33: 'RBM12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
RBM12 MUTATED 4 1 0
RBM12 WILD-TYPE 85 34 22
'RBM12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S323.  Gene #33: 'RBM12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
RBM12 MUTATED 4 1 0
RBM12 WILD-TYPE 58 50 31
'RBM12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S324.  Gene #33: 'RBM12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
RBM12 MUTATED 3 1 1
RBM12 WILD-TYPE 72 44 23
'VWA3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S325.  Gene #34: 'VWA3A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
VWA3A MUTATED 2 3 0
VWA3A WILD-TYPE 64 62 14
'VWA3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S326.  Gene #34: 'VWA3A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
VWA3A MUTATED 2 1 2 0
VWA3A WILD-TYPE 36 28 43 34
'VWA3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S327.  Gene #34: 'VWA3A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
VWA3A MUTATED 0 1 1 1 0
VWA3A WILD-TYPE 34 15 10 10 13
'VWA3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S328.  Gene #34: 'VWA3A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
VWA3A MUTATED 0 1 0 0 0 1 1
VWA3A WILD-TYPE 12 16 21 9 6 13 5
'VWA3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S329.  Gene #34: 'VWA3A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
VWA3A MUTATED 3 1 1
VWA3A WILD-TYPE 68 42 31
'VWA3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S330.  Gene #34: 'VWA3A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
VWA3A MUTATED 2 3 0
VWA3A WILD-TYPE 65 60 16
'VWA3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S331.  Gene #34: 'VWA3A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
VWA3A MUTATED 3 1 1 0
VWA3A WILD-TYPE 59 35 27 20
'VWA3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S332.  Gene #34: 'VWA3A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
VWA3A MUTATED 4 1 0
VWA3A WILD-TYPE 85 34 22
'VWA3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S333.  Gene #34: 'VWA3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
VWA3A MUTATED 4 1 0
VWA3A WILD-TYPE 58 50 31
'VWA3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S334.  Gene #34: 'VWA3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
VWA3A MUTATED 2 2 1
VWA3A WILD-TYPE 73 43 23
'NBPF16 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S335.  Gene #35: 'NBPF16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
NBPF16 MUTATED 4 3 0
NBPF16 WILD-TYPE 62 62 14
'NBPF16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S336.  Gene #35: 'NBPF16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
NBPF16 MUTATED 0 2 3 2
NBPF16 WILD-TYPE 38 27 42 32
'NBPF16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S337.  Gene #35: 'NBPF16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
NBPF16 MUTATED 4 1 2
NBPF16 WILD-TYPE 67 42 30
'NBPF16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0928 (Fisher's exact test), Q value = 1

Table S338.  Gene #35: 'NBPF16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
NBPF16 MUTATED 1 4 2
NBPF16 WILD-TYPE 66 59 14
'NBPF16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S339.  Gene #35: 'NBPF16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
NBPF16 MUTATED 2 1 2 2
NBPF16 WILD-TYPE 60 35 26 18
'NBPF16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S340.  Gene #35: 'NBPF16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
NBPF16 MUTATED 4 1 2
NBPF16 WILD-TYPE 85 34 20
'NBPF16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S341.  Gene #35: 'NBPF16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
NBPF16 MUTATED 3 3 0
NBPF16 WILD-TYPE 59 48 31
'NBPF16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0379 (Fisher's exact test), Q value = 1

Table S342.  Gene #35: 'NBPF16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
NBPF16 MUTATED 3 0 3
NBPF16 WILD-TYPE 72 45 21

Figure S19.  Get High-res Image Gene #35: 'NBPF16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PARP10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S343.  Gene #36: 'PARP10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
PARP10 MUTATED 2 3 0
PARP10 WILD-TYPE 64 62 14
'PARP10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 1

Table S344.  Gene #36: 'PARP10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
PARP10 MUTATED 2 0 1 2
PARP10 WILD-TYPE 36 29 44 32
'PARP10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S345.  Gene #36: 'PARP10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
PARP10 MUTATED 2 0 1 0 1
PARP10 WILD-TYPE 32 16 10 11 12
'PARP10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S346.  Gene #36: 'PARP10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
PARP10 MUTATED 1 0 1 0 0 1 1
PARP10 WILD-TYPE 11 17 20 9 6 13 5
'PARP10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S347.  Gene #36: 'PARP10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
PARP10 MUTATED 3 1 1
PARP10 WILD-TYPE 68 42 31
'PARP10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S348.  Gene #36: 'PARP10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
PARP10 MUTATED 2 3 0
PARP10 WILD-TYPE 65 60 16
'PARP10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S349.  Gene #36: 'PARP10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
PARP10 MUTATED 1 2 1 1
PARP10 WILD-TYPE 61 34 27 19
'PARP10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S350.  Gene #36: 'PARP10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
PARP10 MUTATED 4 0 1
PARP10 WILD-TYPE 85 35 21
'PARP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S351.  Gene #36: 'PARP10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
PARP10 MUTATED 4 1 0
PARP10 WILD-TYPE 58 50 31
'PARP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S352.  Gene #36: 'PARP10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
PARP10 MUTATED 1 3 1
PARP10 WILD-TYPE 74 42 23
'TGFBR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S353.  Gene #37: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
TGFBR2 MUTATED 5 3 0
TGFBR2 WILD-TYPE 61 62 14
'TGFBR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S354.  Gene #37: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
TGFBR2 MUTATED 4 0 1 3
TGFBR2 WILD-TYPE 34 29 44 31
'TGFBR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S355.  Gene #37: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
TGFBR2 MUTATED 2 2 1 0 0
TGFBR2 WILD-TYPE 32 14 10 11 13
'TGFBR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S356.  Gene #37: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
TGFBR2 MUTATED 0 2 1 0 0 1 1
TGFBR2 WILD-TYPE 12 15 20 9 6 13 5
'TGFBR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S357.  Gene #37: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
TGFBR2 MUTATED 5 2 1
TGFBR2 WILD-TYPE 66 41 31
'TGFBR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S358.  Gene #37: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
TGFBR2 MUTATED 3 4 1
TGFBR2 WILD-TYPE 64 59 15
'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S359.  Gene #37: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
TGFBR2 MUTATED 3 1 2 2
TGFBR2 WILD-TYPE 59 35 26 18
'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S360.  Gene #37: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
TGFBR2 MUTATED 7 0 1
TGFBR2 WILD-TYPE 82 35 21
'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S361.  Gene #37: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
TGFBR2 MUTATED 6 1 1
TGFBR2 WILD-TYPE 56 50 30
'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S362.  Gene #37: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
TGFBR2 MUTATED 6 1 1
TGFBR2 WILD-TYPE 69 44 23
'HACL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S363.  Gene #38: 'HACL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
HACL1 MUTATED 2 3 0
HACL1 WILD-TYPE 64 62 14
'HACL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S364.  Gene #38: 'HACL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
HACL1 MUTATED 0 1 3 1
HACL1 WILD-TYPE 38 28 42 33
'HACL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S365.  Gene #38: 'HACL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
HACL1 MUTATED 2 0 1 0 0
HACL1 WILD-TYPE 32 16 10 11 13
'HACL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0828 (Fisher's exact test), Q value = 1

Table S366.  Gene #38: 'HACL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
HACL1 MUTATED 2 0 0 1 0 0 0
HACL1 WILD-TYPE 10 17 21 8 6 14 6
'HACL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S367.  Gene #38: 'HACL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
HACL1 MUTATED 2 1 2
HACL1 WILD-TYPE 69 42 30
'HACL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S368.  Gene #38: 'HACL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
HACL1 MUTATED 3 1 1
HACL1 WILD-TYPE 64 62 15
'HACL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S369.  Gene #38: 'HACL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
HACL1 MUTATED 3 1 1 0
HACL1 WILD-TYPE 59 35 27 20
'HACL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S370.  Gene #38: 'HACL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
HACL1 MUTATED 3 1 1
HACL1 WILD-TYPE 86 34 21
'HACL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S371.  Gene #38: 'HACL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
HACL1 MUTATED 2 2 1
HACL1 WILD-TYPE 60 49 30
'HACL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S372.  Gene #38: 'HACL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
HACL1 MUTATED 3 1 1
HACL1 WILD-TYPE 72 44 23
'PRKRA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S373.  Gene #39: 'PRKRA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
PRKRA MUTATED 3 0 1
PRKRA WILD-TYPE 63 65 13
'PRKRA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S374.  Gene #39: 'PRKRA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
PRKRA MUTATED 2 0 1 1
PRKRA WILD-TYPE 36 29 44 33
'PRKRA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S375.  Gene #39: 'PRKRA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
PRKRA MUTATED 2 2 0
PRKRA WILD-TYPE 69 41 32
'PRKRA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S376.  Gene #39: 'PRKRA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
PRKRA MUTATED 2 2 0
PRKRA WILD-TYPE 65 61 16
'PRKRA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S377.  Gene #39: 'PRKRA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
PRKRA MUTATED 2 2 0 0
PRKRA WILD-TYPE 60 34 28 20
'PRKRA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S378.  Gene #39: 'PRKRA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
PRKRA MUTATED 3 1 0
PRKRA WILD-TYPE 86 34 22
'PRKRA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S379.  Gene #39: 'PRKRA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
PRKRA MUTATED 2 1 1
PRKRA WILD-TYPE 60 50 30
'PRKRA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S380.  Gene #39: 'PRKRA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
PRKRA MUTATED 3 1 0
PRKRA WILD-TYPE 72 44 24
'SORBS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S381.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
SORBS2 MUTATED 4 2 0
SORBS2 WILD-TYPE 62 63 14
'SORBS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S382.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
SORBS2 MUTATED 1 0 4 1
SORBS2 WILD-TYPE 37 29 41 33
'SORBS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S383.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
SORBS2 MUTATED 1 1 1 0 0
SORBS2 WILD-TYPE 33 15 10 11 13
'SORBS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.025 (Fisher's exact test), Q value = 1

Table S384.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
SORBS2 MUTATED 0 1 0 0 0 0 2
SORBS2 WILD-TYPE 12 16 21 9 6 14 4

Figure S20.  Get High-res Image Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S385.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
SORBS2 MUTATED 5 1 0
SORBS2 WILD-TYPE 66 42 32
'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S386.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
SORBS2 MUTATED 2 4 0
SORBS2 WILD-TYPE 65 59 16
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S387.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
SORBS2 MUTATED 5 1 0 0
SORBS2 WILD-TYPE 57 35 28 20
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S388.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
SORBS2 MUTATED 6 0 0
SORBS2 WILD-TYPE 83 35 22
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S389.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
SORBS2 MUTATED 5 1 0
SORBS2 WILD-TYPE 57 50 31
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S390.  Gene #40: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
SORBS2 MUTATED 4 2 0
SORBS2 WILD-TYPE 71 43 24
'CD86 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S391.  Gene #41: 'CD86 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
CD86 MUTATED 1 5 0
CD86 WILD-TYPE 65 60 14
'CD86 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S392.  Gene #41: 'CD86 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
CD86 MUTATED 2 1 3 0
CD86 WILD-TYPE 36 28 42 34
'CD86 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S393.  Gene #41: 'CD86 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
CD86 MUTATED 4 0 1 0 0
CD86 WILD-TYPE 30 16 10 11 13
'CD86 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.042 (Fisher's exact test), Q value = 1

Table S394.  Gene #41: 'CD86 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
CD86 MUTATED 2 0 1 0 0 0 2
CD86 WILD-TYPE 10 17 20 9 6 14 4

Figure S21.  Get High-res Image Gene #41: 'CD86 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CD86 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S395.  Gene #41: 'CD86 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
CD86 MUTATED 3 3 0
CD86 WILD-TYPE 68 40 32
'CD86 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S396.  Gene #41: 'CD86 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
CD86 MUTATED 3 3 0
CD86 WILD-TYPE 64 60 16
'CD86 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S397.  Gene #41: 'CD86 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
CD86 MUTATED 4 2 0 0
CD86 WILD-TYPE 58 34 28 20
'CD86 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S398.  Gene #41: 'CD86 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
CD86 MUTATED 5 1 0
CD86 WILD-TYPE 84 34 22
'CD86 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S399.  Gene #41: 'CD86 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
CD86 MUTATED 4 1 1
CD86 WILD-TYPE 58 50 30
'CD86 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S400.  Gene #41: 'CD86 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
CD86 MUTATED 4 2 0
CD86 WILD-TYPE 71 43 24
'RNF32 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S401.  Gene #42: 'RNF32 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
RNF32 MUTATED 3 1 1
RNF32 WILD-TYPE 63 64 13
'RNF32 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S402.  Gene #42: 'RNF32 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
RNF32 MUTATED 2 2 0 1
RNF32 WILD-TYPE 36 27 45 33
'RNF32 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S403.  Gene #42: 'RNF32 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
RNF32 MUTATED 0 1 1 1 1
RNF32 WILD-TYPE 34 15 10 10 12
'RNF32 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S404.  Gene #42: 'RNF32 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
RNF32 MUTATED 0 1 0 0 0 2 1
RNF32 WILD-TYPE 12 16 21 9 6 12 5
'RNF32 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S405.  Gene #42: 'RNF32 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
RNF32 MUTATED 2 2 1
RNF32 WILD-TYPE 69 41 31
'RNF32 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S406.  Gene #42: 'RNF32 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
RNF32 MUTATED 3 2 0
RNF32 WILD-TYPE 64 61 16
'RNF32 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0284 (Fisher's exact test), Q value = 1

Table S407.  Gene #42: 'RNF32 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
RNF32 MUTATED 0 2 3 0
RNF32 WILD-TYPE 62 34 25 20

Figure S22.  Get High-res Image Gene #42: 'RNF32 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RNF32 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S408.  Gene #42: 'RNF32 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
RNF32 MUTATED 3 2 0
RNF32 WILD-TYPE 86 33 22
'RNF32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S409.  Gene #42: 'RNF32 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
RNF32 MUTATED 1 2 1
RNF32 WILD-TYPE 61 49 30
'RNF32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S410.  Gene #42: 'RNF32 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
RNF32 MUTATED 1 2 1
RNF32 WILD-TYPE 74 43 23
'SDCBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0576 (Fisher's exact test), Q value = 1

Table S411.  Gene #43: 'SDCBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
SDCBP MUTATED 5 0 1
SDCBP WILD-TYPE 61 65 13
'SDCBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S412.  Gene #43: 'SDCBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
SDCBP MUTATED 3 2 0 1
SDCBP WILD-TYPE 35 27 45 33
'SDCBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S413.  Gene #43: 'SDCBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
SDCBP MUTATED 1 2 0 1 1
SDCBP WILD-TYPE 33 14 11 10 12
'SDCBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S414.  Gene #43: 'SDCBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
SDCBP MUTATED 0 2 1 0 0 2 0
SDCBP WILD-TYPE 12 15 20 9 6 12 6
'SDCBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S415.  Gene #43: 'SDCBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
SDCBP MUTATED 3 2 1
SDCBP WILD-TYPE 68 41 31
'SDCBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S416.  Gene #43: 'SDCBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
SDCBP MUTATED 3 2 1
SDCBP WILD-TYPE 64 61 15
'SDCBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0407 (Fisher's exact test), Q value = 1

Table S417.  Gene #43: 'SDCBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
SDCBP MUTATED 0 2 3 1
SDCBP WILD-TYPE 62 34 25 19

Figure S23.  Get High-res Image Gene #43: 'SDCBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SDCBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S418.  Gene #43: 'SDCBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
SDCBP MUTATED 3 2 1
SDCBP WILD-TYPE 86 33 21
'SDCBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S419.  Gene #43: 'SDCBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
SDCBP MUTATED 1 4 0
SDCBP WILD-TYPE 61 47 31
'SDCBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S420.  Gene #43: 'SDCBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
SDCBP MUTATED 1 3 1
SDCBP WILD-TYPE 74 42 23
'CDC27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S421.  Gene #44: 'CDC27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
CDC27 MUTATED 5 2 0
CDC27 WILD-TYPE 61 63 14
'CDC27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0529 (Fisher's exact test), Q value = 1

Table S422.  Gene #44: 'CDC27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
CDC27 MUTATED 1 2 0 4
CDC27 WILD-TYPE 37 27 45 30
'CDC27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S423.  Gene #44: 'CDC27 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
CDC27 MUTATED 3 3 1
CDC27 WILD-TYPE 68 40 31
'CDC27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S424.  Gene #44: 'CDC27 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
CDC27 MUTATED 5 2 0
CDC27 WILD-TYPE 62 61 16
'CDC27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S425.  Gene #44: 'CDC27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
CDC27 MUTATED 2 2 3 0
CDC27 WILD-TYPE 60 34 25 20
'CDC27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S426.  Gene #44: 'CDC27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
CDC27 MUTATED 4 2 1
CDC27 WILD-TYPE 85 33 21
'CDC27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S427.  Gene #44: 'CDC27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
CDC27 MUTATED 1 3 3
CDC27 WILD-TYPE 61 48 28
'CDC27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S428.  Gene #44: 'CDC27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
CDC27 MUTATED 2 3 2
CDC27 WILD-TYPE 73 42 22
'NLRP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S429.  Gene #45: 'NLRP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
NLRP2 MUTATED 2 3 1
NLRP2 WILD-TYPE 64 62 13
'NLRP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S430.  Gene #45: 'NLRP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
NLRP2 MUTATED 3 0 2 1
NLRP2 WILD-TYPE 35 29 43 33
'NLRP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S431.  Gene #45: 'NLRP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
NLRP2 MUTATED 2 1 1 0 0
NLRP2 WILD-TYPE 32 15 10 11 13
'NLRP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S432.  Gene #45: 'NLRP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
NLRP2 MUTATED 0 1 1 0 0 0 2
NLRP2 WILD-TYPE 12 16 20 9 6 14 4
'NLRP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S433.  Gene #45: 'NLRP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
NLRP2 MUTATED 5 1 0
NLRP2 WILD-TYPE 66 42 32
'NLRP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S434.  Gene #45: 'NLRP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
NLRP2 MUTATED 3 3 0
NLRP2 WILD-TYPE 64 60 16
'NLRP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S435.  Gene #45: 'NLRP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
NLRP2 MUTATED 5 1 0 0
NLRP2 WILD-TYPE 57 35 28 20
'NLRP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S436.  Gene #45: 'NLRP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
NLRP2 MUTATED 6 0 0
NLRP2 WILD-TYPE 83 35 22
'NLRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0181 (Fisher's exact test), Q value = 1

Table S437.  Gene #45: 'NLRP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
NLRP2 MUTATED 6 0 0
NLRP2 WILD-TYPE 56 51 31

Figure S24.  Get High-res Image Gene #45: 'NLRP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NLRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S438.  Gene #45: 'NLRP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
NLRP2 MUTATED 4 2 0
NLRP2 WILD-TYPE 71 43 24
'PLIN4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S439.  Gene #46: 'PLIN4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
PLIN4 MUTATED 6 1 0
PLIN4 WILD-TYPE 60 64 14
'PLIN4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S440.  Gene #46: 'PLIN4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
PLIN4 MUTATED 3 1 1 2
PLIN4 WILD-TYPE 35 28 44 32
'PLIN4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S441.  Gene #46: 'PLIN4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
PLIN4 MUTATED 1 1 1 1 0
PLIN4 WILD-TYPE 33 15 10 10 13
'PLIN4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S442.  Gene #46: 'PLIN4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
PLIN4 MUTATED 0 1 2 0 0 0 1
PLIN4 WILD-TYPE 12 16 19 9 6 14 5
'PLIN4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S443.  Gene #46: 'PLIN4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
PLIN4 MUTATED 3 2 2
PLIN4 WILD-TYPE 68 41 30
'PLIN4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S444.  Gene #46: 'PLIN4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
PLIN4 MUTATED 3 2 2
PLIN4 WILD-TYPE 64 61 14
'PLIN4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S445.  Gene #46: 'PLIN4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
PLIN4 MUTATED 3 1 1 2
PLIN4 WILD-TYPE 59 35 27 18
'PLIN4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S446.  Gene #46: 'PLIN4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
PLIN4 MUTATED 5 0 2
PLIN4 WILD-TYPE 84 35 20
'PLIN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S447.  Gene #46: 'PLIN4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
PLIN4 MUTATED 4 3 0
PLIN4 WILD-TYPE 58 48 31
'PLIN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S448.  Gene #46: 'PLIN4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
PLIN4 MUTATED 3 2 2
PLIN4 WILD-TYPE 72 43 22
'CBX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S449.  Gene #47: 'CBX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
CBX3 MUTATED 1 3 0
CBX3 WILD-TYPE 65 62 14
'CBX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S450.  Gene #47: 'CBX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
CBX3 MUTATED 0 2 2 0
CBX3 WILD-TYPE 38 27 43 34
'CBX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S451.  Gene #47: 'CBX3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
CBX3 MUTATED 2 2 0
CBX3 WILD-TYPE 69 41 32
'CBX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S452.  Gene #47: 'CBX3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
CBX3 MUTATED 2 2 0
CBX3 WILD-TYPE 65 61 16
'CBX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S453.  Gene #47: 'CBX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
CBX3 MUTATED 2 2 0 0
CBX3 WILD-TYPE 60 34 28 20
'CBX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S454.  Gene #47: 'CBX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
CBX3 MUTATED 2 2 0
CBX3 WILD-TYPE 87 33 22
'CBX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S455.  Gene #47: 'CBX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
CBX3 MUTATED 2 1 1
CBX3 WILD-TYPE 60 50 30
'CBX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S456.  Gene #47: 'CBX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
CBX3 MUTATED 2 2 0
CBX3 WILD-TYPE 73 43 24
'SUZ12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S457.  Gene #48: 'SUZ12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
SUZ12 MUTATED 3 1 0
SUZ12 WILD-TYPE 63 64 14
'SUZ12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S458.  Gene #48: 'SUZ12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
SUZ12 MUTATED 1 0 1 2
SUZ12 WILD-TYPE 37 29 44 32
'SUZ12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S459.  Gene #48: 'SUZ12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
SUZ12 MUTATED 1 2 1 0 0
SUZ12 WILD-TYPE 33 14 10 11 13
'SUZ12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 1

Table S460.  Gene #48: 'SUZ12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
SUZ12 MUTATED 0 2 0 0 0 0 2
SUZ12 WILD-TYPE 12 15 21 9 6 14 4

Figure S25.  Get High-res Image Gene #48: 'SUZ12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SUZ12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S461.  Gene #48: 'SUZ12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
SUZ12 MUTATED 3 1 0
SUZ12 WILD-TYPE 68 42 32
'SUZ12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S462.  Gene #48: 'SUZ12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
SUZ12 MUTATED 1 3 0
SUZ12 WILD-TYPE 66 60 16
'SUZ12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S463.  Gene #48: 'SUZ12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
SUZ12 MUTATED 1 1 2 0
SUZ12 WILD-TYPE 61 35 26 20
'SUZ12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S464.  Gene #48: 'SUZ12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
SUZ12 MUTATED 4 0 0
SUZ12 WILD-TYPE 85 35 22
'SUZ12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S465.  Gene #48: 'SUZ12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
SUZ12 MUTATED 3 1 0
SUZ12 WILD-TYPE 59 50 31
'SUZ12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S466.  Gene #48: 'SUZ12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
SUZ12 MUTATED 3 1 0
SUZ12 WILD-TYPE 72 44 24
'MTBP MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S467.  Gene #49: 'MTBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
MTBP MUTATED 2 1 0
MTBP WILD-TYPE 64 64 14
'MTBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S468.  Gene #49: 'MTBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
MTBP MUTATED 0 1 0 2
MTBP WILD-TYPE 38 28 45 32
'MTBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.084 (Fisher's exact test), Q value = 1

Table S469.  Gene #49: 'MTBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
MTBP MUTATED 0 1 0 0 2
MTBP WILD-TYPE 34 15 11 11 11
'MTBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S470.  Gene #49: 'MTBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
MTBP MUTATED 0 1 0 0 0 2 0
MTBP WILD-TYPE 12 16 21 9 6 12 6
'MTBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S471.  Gene #49: 'MTBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
MTBP MUTATED 2 1 0
MTBP WILD-TYPE 69 42 32
'MTBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S472.  Gene #49: 'MTBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
MTBP MUTATED 2 1 0
MTBP WILD-TYPE 65 62 16
'MTBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S473.  Gene #49: 'MTBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
MTBP MUTATED 1 1 1 0
MTBP WILD-TYPE 61 35 27 20
'MTBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S474.  Gene #49: 'MTBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
MTBP MUTATED 2 1 0
MTBP WILD-TYPE 87 34 22
'MTBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S475.  Gene #49: 'MTBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
MTBP MUTATED 1 2 0
MTBP WILD-TYPE 61 49 31
'MTBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S476.  Gene #49: 'MTBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
MTBP MUTATED 0 2 1
MTBP WILD-TYPE 75 43 23
'SYT14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S477.  Gene #50: 'SYT14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
SYT14 MUTATED 1 2 1
SYT14 WILD-TYPE 65 63 13
'SYT14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S478.  Gene #50: 'SYT14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
SYT14 MUTATED 2 0 1 1
SYT14 WILD-TYPE 36 29 44 33
'SYT14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S479.  Gene #50: 'SYT14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
SYT14 MUTATED 1 0 1 0 2
SYT14 WILD-TYPE 33 16 10 11 11
'SYT14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0119 (Fisher's exact test), Q value = 1

Table S480.  Gene #50: 'SYT14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
SYT14 MUTATED 0 0 0 0 0 2 2
SYT14 WILD-TYPE 12 17 21 9 6 12 4

Figure S26.  Get High-res Image Gene #50: 'SYT14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SYT14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S481.  Gene #50: 'SYT14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
SYT14 MUTATED 3 1 0
SYT14 WILD-TYPE 68 42 32
'SYT14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S482.  Gene #50: 'SYT14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
SYT14 MUTATED 1 3 0
SYT14 WILD-TYPE 66 60 16
'SYT14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S483.  Gene #50: 'SYT14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
SYT14 MUTATED 2 1 1 0
SYT14 WILD-TYPE 60 35 27 20
'SYT14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S484.  Gene #50: 'SYT14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
SYT14 MUTATED 4 0 0
SYT14 WILD-TYPE 85 35 22
'SYT14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S485.  Gene #50: 'SYT14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
SYT14 MUTATED 3 0 0
SYT14 WILD-TYPE 59 51 31
'SYT14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S486.  Gene #50: 'SYT14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
SYT14 MUTATED 1 2 0
SYT14 WILD-TYPE 74 43 24
'RNF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S487.  Gene #51: 'RNF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
RNF43 MUTATED 3 4 1
RNF43 WILD-TYPE 63 61 13
'RNF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0188 (Fisher's exact test), Q value = 1

Table S488.  Gene #51: 'RNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
RNF43 MUTATED 6 0 1 1
RNF43 WILD-TYPE 32 29 44 33

Figure S27.  Get High-res Image Gene #51: 'RNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RNF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S489.  Gene #51: 'RNF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
RNF43 MUTATED 4 0 1 0 0
RNF43 WILD-TYPE 30 16 10 11 13
'RNF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S490.  Gene #51: 'RNF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
RNF43 MUTATED 2 0 2 0 0 0 1
RNF43 WILD-TYPE 10 17 19 9 6 14 5
'RNF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0969 (Fisher's exact test), Q value = 1

Table S491.  Gene #51: 'RNF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
RNF43 MUTATED 7 1 0
RNF43 WILD-TYPE 64 42 32
'RNF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S492.  Gene #51: 'RNF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
RNF43 MUTATED 2 6 0
RNF43 WILD-TYPE 65 57 16
'RNF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S493.  Gene #51: 'RNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
RNF43 MUTATED 5 1 2 0
RNF43 WILD-TYPE 57 35 26 20
'RNF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0931 (Fisher's exact test), Q value = 1

Table S494.  Gene #51: 'RNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
RNF43 MUTATED 8 0 0
RNF43 WILD-TYPE 81 35 22
'RNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S495.  Gene #51: 'RNF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
RNF43 MUTATED 6 1 1
RNF43 WILD-TYPE 56 50 30
'RNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S496.  Gene #51: 'RNF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
RNF43 MUTATED 6 2 0
RNF43 WILD-TYPE 69 43 24
'AAK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0246 (Fisher's exact test), Q value = 1

Table S497.  Gene #52: 'AAK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
AAK1 MUTATED 2 0 2
AAK1 WILD-TYPE 64 65 12

Figure S28.  Get High-res Image Gene #52: 'AAK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AAK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S498.  Gene #52: 'AAK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
AAK1 MUTATED 1 0 1 2
AAK1 WILD-TYPE 37 29 44 32
'AAK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S499.  Gene #52: 'AAK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
AAK1 MUTATED 2 0 0 1 0
AAK1 WILD-TYPE 32 16 11 10 13
'AAK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S500.  Gene #52: 'AAK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
AAK1 MUTATED 0 0 2 0 1 0 0
AAK1 WILD-TYPE 12 17 19 9 5 14 6
'AAK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0404 (Fisher's exact test), Q value = 1

Table S501.  Gene #52: 'AAK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
AAK1 MUTATED 1 0 3
AAK1 WILD-TYPE 70 43 29

Figure S29.  Get High-res Image Gene #52: 'AAK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'AAK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0602 (Fisher's exact test), Q value = 1

Table S502.  Gene #52: 'AAK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
AAK1 MUTATED 1 1 2
AAK1 WILD-TYPE 66 62 14
'AAK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00297 (Fisher's exact test), Q value = 1

Table S503.  Gene #52: 'AAK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
AAK1 MUTATED 0 0 1 3
AAK1 WILD-TYPE 62 36 27 17

Figure S30.  Get High-res Image Gene #52: 'AAK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AAK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S504.  Gene #52: 'AAK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
AAK1 MUTATED 2 0 2
AAK1 WILD-TYPE 87 35 20
'AAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S505.  Gene #52: 'AAK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
AAK1 MUTATED 0 3 1
AAK1 WILD-TYPE 62 48 30
'AAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S506.  Gene #52: 'AAK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
AAK1 MUTATED 2 0 2
AAK1 WILD-TYPE 73 45 22
'HSPE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S507.  Gene #53: 'HSPE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
HSPE1 MUTATED 1 2 1
HSPE1 WILD-TYPE 65 63 13
'HSPE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S508.  Gene #53: 'HSPE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
HSPE1 MUTATED 0 0 2 2
HSPE1 WILD-TYPE 38 29 43 32
'HSPE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S509.  Gene #53: 'HSPE1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
HSPE1 MUTATED 2 1 1
HSPE1 WILD-TYPE 69 42 31
'HSPE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S510.  Gene #53: 'HSPE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
HSPE1 MUTATED 1 2 1
HSPE1 WILD-TYPE 66 61 15
'HSPE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0748 (Fisher's exact test), Q value = 1

Table S511.  Gene #53: 'HSPE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
HSPE1 MUTATED 1 0 3 0
HSPE1 WILD-TYPE 61 36 25 20
'HSPE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S512.  Gene #53: 'HSPE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
HSPE1 MUTATED 3 0 1
HSPE1 WILD-TYPE 86 35 21
'HSPE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S513.  Gene #53: 'HSPE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
HSPE1 MUTATED 1 2 1
HSPE1 WILD-TYPE 61 49 30
'HSPE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S514.  Gene #53: 'HSPE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
HSPE1 MUTATED 3 0 1
HSPE1 WILD-TYPE 72 45 23
'TMCC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0794 (Fisher's exact test), Q value = 1

Table S515.  Gene #54: 'TMCC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
TMCC1 MUTATED 4 1 2
TMCC1 WILD-TYPE 62 64 12
'TMCC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S516.  Gene #54: 'TMCC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
TMCC1 MUTATED 2 2 1 2
TMCC1 WILD-TYPE 36 27 44 32
'TMCC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S517.  Gene #54: 'TMCC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
TMCC1 MUTATED 1 0 1 1 0
TMCC1 WILD-TYPE 33 16 10 10 13
'TMCC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S518.  Gene #54: 'TMCC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
TMCC1 MUTATED 0 0 1 0 1 0 1
TMCC1 WILD-TYPE 12 17 20 9 5 14 5
'TMCC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S519.  Gene #54: 'TMCC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
TMCC1 MUTATED 3 3 1
TMCC1 WILD-TYPE 68 40 31
'TMCC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S520.  Gene #54: 'TMCC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
TMCC1 MUTATED 4 3 0
TMCC1 WILD-TYPE 63 60 16
'TMCC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S521.  Gene #54: 'TMCC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
TMCC1 MUTATED 1 3 2 1
TMCC1 WILD-TYPE 61 33 26 19
'TMCC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S522.  Gene #54: 'TMCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
TMCC1 MUTATED 5 2 0
TMCC1 WILD-TYPE 84 33 22
'TMCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S523.  Gene #54: 'TMCC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
TMCC1 MUTATED 2 1 3
TMCC1 WILD-TYPE 60 50 28
'TMCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S524.  Gene #54: 'TMCC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
TMCC1 MUTATED 4 2 0
TMCC1 WILD-TYPE 71 43 24
'CFTR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S525.  Gene #55: 'CFTR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
CFTR MUTATED 6 1 0
CFTR WILD-TYPE 60 64 14
'CFTR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S526.  Gene #55: 'CFTR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
CFTR MUTATED 3 1 2 1
CFTR WILD-TYPE 35 28 43 33
'CFTR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S527.  Gene #55: 'CFTR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
CFTR MUTATED 3 0 1 2 0
CFTR WILD-TYPE 31 16 10 9 13
'CFTR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S528.  Gene #55: 'CFTR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
CFTR MUTATED 0 0 3 0 0 1 2
CFTR WILD-TYPE 12 17 18 9 6 13 4
'CFTR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S529.  Gene #55: 'CFTR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
CFTR MUTATED 2 2 3
CFTR WILD-TYPE 69 41 29
'CFTR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S530.  Gene #55: 'CFTR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
CFTR MUTATED 2 3 2
CFTR WILD-TYPE 65 60 14
'CFTR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00531 (Fisher's exact test), Q value = 1

Table S531.  Gene #55: 'CFTR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
CFTR MUTATED 0 1 3 3
CFTR WILD-TYPE 62 35 25 17

Figure S31.  Get High-res Image Gene #55: 'CFTR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CFTR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S532.  Gene #55: 'CFTR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
CFTR MUTATED 4 1 2
CFTR WILD-TYPE 85 34 20
'CFTR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S533.  Gene #55: 'CFTR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
CFTR MUTATED 1 5 1
CFTR WILD-TYPE 61 46 30
'CFTR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S534.  Gene #55: 'CFTR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
CFTR MUTATED 3 2 2
CFTR WILD-TYPE 72 43 22
'NAA20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S535.  Gene #56: 'NAA20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
NAA20 MUTATED 3 0 0
NAA20 WILD-TYPE 63 65 14
'NAA20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S536.  Gene #56: 'NAA20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
NAA20 MUTATED 0 1 0 2
NAA20 WILD-TYPE 38 28 45 32
'NAA20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 1

Table S537.  Gene #56: 'NAA20 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
NAA20 MUTATED 0 3 0 0 0
NAA20 WILD-TYPE 34 13 11 11 13

Figure S32.  Get High-res Image Gene #56: 'NAA20 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NAA20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S538.  Gene #56: 'NAA20 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
NAA20 MUTATED 0 3 0 0 0 0 0
NAA20 WILD-TYPE 12 14 21 9 6 14 6
'NAA20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S539.  Gene #56: 'NAA20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
NAA20 MUTATED 2 1 0
NAA20 WILD-TYPE 69 42 32
'NAA20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S540.  Gene #56: 'NAA20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
NAA20 MUTATED 1 2 0
NAA20 WILD-TYPE 66 61 16
'NAA20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S541.  Gene #56: 'NAA20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
NAA20 MUTATED 0 1 2 0
NAA20 WILD-TYPE 62 35 26 20
'NAA20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S542.  Gene #56: 'NAA20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
NAA20 MUTATED 2 1 0
NAA20 WILD-TYPE 87 34 22
'NAA20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S543.  Gene #56: 'NAA20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
NAA20 MUTATED 1 2 0
NAA20 WILD-TYPE 61 49 31
'NAA20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S544.  Gene #56: 'NAA20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
NAA20 MUTATED 2 1 0
NAA20 WILD-TYPE 73 44 24
'TRPC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S545.  Gene #57: 'TRPC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
TRPC4 MUTATED 4 1 1
TRPC4 WILD-TYPE 62 64 13
'TRPC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S546.  Gene #57: 'TRPC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
TRPC4 MUTATED 2 1 1 2
TRPC4 WILD-TYPE 36 28 44 32
'TRPC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S547.  Gene #57: 'TRPC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
TRPC4 MUTATED 2 1 2 0 0
TRPC4 WILD-TYPE 32 15 9 11 13
'TRPC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S548.  Gene #57: 'TRPC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
TRPC4 MUTATED 1 1 0 0 0 1 2
TRPC4 WILD-TYPE 11 16 21 9 6 13 4
'TRPC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S549.  Gene #57: 'TRPC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
TRPC4 MUTATED 2 1 3
TRPC4 WILD-TYPE 69 42 29
'TRPC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S550.  Gene #57: 'TRPC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
TRPC4 MUTATED 4 2 0
TRPC4 WILD-TYPE 63 61 16
'TRPC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S551.  Gene #57: 'TRPC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
TRPC4 MUTATED 2 2 1 1
TRPC4 WILD-TYPE 60 34 27 19
'TRPC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S552.  Gene #57: 'TRPC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
TRPC4 MUTATED 3 1 2
TRPC4 WILD-TYPE 86 34 20
'TRPC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S553.  Gene #57: 'TRPC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
TRPC4 MUTATED 2 3 1
TRPC4 WILD-TYPE 60 48 30
'TRPC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S554.  Gene #57: 'TRPC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
TRPC4 MUTATED 2 3 1
TRPC4 WILD-TYPE 73 42 23
'CHRNA9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0812 (Fisher's exact test), Q value = 1

Table S555.  Gene #58: 'CHRNA9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
CHRNA9 MUTATED 0 3 1
CHRNA9 WILD-TYPE 66 62 13
'CHRNA9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S556.  Gene #58: 'CHRNA9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
CHRNA9 MUTATED 3 0 1 0
CHRNA9 WILD-TYPE 35 29 44 34
'CHRNA9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S557.  Gene #58: 'CHRNA9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
CHRNA9 MUTATED 2 0 1 1 0
CHRNA9 WILD-TYPE 32 16 10 10 13
'CHRNA9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S558.  Gene #58: 'CHRNA9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
CHRNA9 MUTATED 1 0 1 1 1 0 0
CHRNA9 WILD-TYPE 11 17 20 8 5 14 6
'CHRNA9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S559.  Gene #58: 'CHRNA9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
CHRNA9 MUTATED 2 2 0
CHRNA9 WILD-TYPE 69 41 32
'CHRNA9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S560.  Gene #58: 'CHRNA9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
CHRNA9 MUTATED 3 1 0
CHRNA9 WILD-TYPE 64 62 16
'CHRNA9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S561.  Gene #58: 'CHRNA9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
CHRNA9 MUTATED 1 1 1 1
CHRNA9 WILD-TYPE 61 35 27 19
'CHRNA9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S562.  Gene #58: 'CHRNA9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
CHRNA9 MUTATED 3 0 1
CHRNA9 WILD-TYPE 86 35 21
'CHRNA9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S563.  Gene #58: 'CHRNA9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
CHRNA9 MUTATED 2 0 2
CHRNA9 WILD-TYPE 60 51 29
'CHRNA9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S564.  Gene #58: 'CHRNA9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
CHRNA9 MUTATED 2 1 1
CHRNA9 WILD-TYPE 73 44 23
'SP140 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S565.  Gene #59: 'SP140 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
SP140 MUTATED 3 2 0
SP140 WILD-TYPE 63 63 14
'SP140 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S566.  Gene #59: 'SP140 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
SP140 MUTATED 1 0 3 1
SP140 WILD-TYPE 37 29 42 33
'SP140 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S567.  Gene #59: 'SP140 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
SP140 MUTATED 0 1 1 1 0
SP140 WILD-TYPE 34 15 10 10 13
'SP140 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S568.  Gene #59: 'SP140 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
SP140 MUTATED 0 1 0 0 0 1 1
SP140 WILD-TYPE 12 16 21 9 6 13 5
'SP140 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S569.  Gene #59: 'SP140 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
SP140 MUTATED 3 1 1
SP140 WILD-TYPE 68 42 31
'SP140 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S570.  Gene #59: 'SP140 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
SP140 MUTATED 2 3 0
SP140 WILD-TYPE 65 60 16
'SP140 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S571.  Gene #59: 'SP140 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
SP140 MUTATED 3 1 1 0
SP140 WILD-TYPE 59 35 27 20
'SP140 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S572.  Gene #59: 'SP140 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
SP140 MUTATED 5 0 0
SP140 WILD-TYPE 84 35 22
'SP140 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S573.  Gene #59: 'SP140 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
SP140 MUTATED 4 1 0
SP140 WILD-TYPE 58 50 31
'SP140 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S574.  Gene #59: 'SP140 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
SP140 MUTATED 3 2 0
SP140 WILD-TYPE 72 43 24
'KCNA7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S575.  Gene #60: 'KCNA7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
KCNA7 MUTATED 1 3 0
KCNA7 WILD-TYPE 65 62 14
'KCNA7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0554 (Fisher's exact test), Q value = 1

Table S576.  Gene #60: 'KCNA7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
KCNA7 MUTATED 3 2 0 0
KCNA7 WILD-TYPE 35 27 45 34
'KCNA7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S577.  Gene #60: 'KCNA7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
KCNA7 MUTATED 3 0 2 0 0
KCNA7 WILD-TYPE 31 16 9 11 13
'KCNA7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S578.  Gene #60: 'KCNA7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
KCNA7 MUTATED 1 0 2 1 0 0 1
KCNA7 WILD-TYPE 11 17 19 8 6 14 5
'KCNA7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.055 (Fisher's exact test), Q value = 1

Table S579.  Gene #60: 'KCNA7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
KCNA7 MUTATED 1 4 0
KCNA7 WILD-TYPE 70 39 32
'KCNA7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0823 (Fisher's exact test), Q value = 1

Table S580.  Gene #60: 'KCNA7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
KCNA7 MUTATED 5 0 0
KCNA7 WILD-TYPE 62 63 16
'KCNA7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0676 (Fisher's exact test), Q value = 1

Table S581.  Gene #60: 'KCNA7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
KCNA7 MUTATED 1 4 0 0
KCNA7 WILD-TYPE 61 32 28 20
'KCNA7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S582.  Gene #60: 'KCNA7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
KCNA7 MUTATED 2 3 0
KCNA7 WILD-TYPE 87 32 22
'KCNA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S583.  Gene #60: 'KCNA7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
KCNA7 MUTATED 2 2 1
KCNA7 WILD-TYPE 60 49 30
'KCNA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0753 (Fisher's exact test), Q value = 1

Table S584.  Gene #60: 'KCNA7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
KCNA7 MUTATED 1 4 0
KCNA7 WILD-TYPE 74 41 24
'AQP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S585.  Gene #61: 'AQP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
AQP7 MUTATED 2 5 0
AQP7 WILD-TYPE 64 60 14
'AQP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0738 (Fisher's exact test), Q value = 1

Table S586.  Gene #61: 'AQP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
AQP7 MUTATED 2 0 5 0
AQP7 WILD-TYPE 36 29 40 34
'AQP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S587.  Gene #61: 'AQP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
AQP7 MUTATED 2 0 1 0 3
AQP7 WILD-TYPE 32 16 10 11 10
'AQP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S588.  Gene #61: 'AQP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
AQP7 MUTATED 1 0 1 0 1 2 1
AQP7 WILD-TYPE 11 17 20 9 5 12 5
'AQP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S589.  Gene #61: 'AQP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
AQP7 MUTATED 4 1 2
AQP7 WILD-TYPE 67 42 30
'AQP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S590.  Gene #61: 'AQP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
AQP7 MUTATED 3 4 0
AQP7 WILD-TYPE 64 59 16
'AQP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S591.  Gene #61: 'AQP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
AQP7 MUTATED 4 1 0 2
AQP7 WILD-TYPE 58 35 28 18
'AQP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S592.  Gene #61: 'AQP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
AQP7 MUTATED 6 0 1
AQP7 WILD-TYPE 83 35 21
'AQP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S593.  Gene #61: 'AQP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
AQP7 MUTATED 5 1 1
AQP7 WILD-TYPE 57 50 30
'AQP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S594.  Gene #61: 'AQP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
AQP7 MUTATED 5 1 1
AQP7 WILD-TYPE 70 44 23
'SKA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0798 (Fisher's exact test), Q value = 1

Table S595.  Gene #62: 'SKA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
SKA3 MUTATED 1 3 2
SKA3 WILD-TYPE 65 62 12
'SKA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S596.  Gene #62: 'SKA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
SKA3 MUTATED 3 1 2 0
SKA3 WILD-TYPE 35 28 43 34
'SKA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S597.  Gene #62: 'SKA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
SKA3 MUTATED 1 1 2 0 1
SKA3 WILD-TYPE 33 15 9 11 12
'SKA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S598.  Gene #62: 'SKA3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
SKA3 MUTATED 1 1 0 1 1 0 1
SKA3 WILD-TYPE 11 16 21 8 5 14 5
'SKA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S599.  Gene #62: 'SKA3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
SKA3 MUTATED 2 4 0
SKA3 WILD-TYPE 69 39 32
'SKA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S600.  Gene #62: 'SKA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
SKA3 MUTATED 4 2 0
SKA3 WILD-TYPE 63 61 16
'SKA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S601.  Gene #62: 'SKA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
SKA3 MUTATED 3 3 0 0
SKA3 WILD-TYPE 59 33 28 20
'SKA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S602.  Gene #62: 'SKA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
SKA3 MUTATED 5 1 0
SKA3 WILD-TYPE 84 34 22
'SKA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S603.  Gene #62: 'SKA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
SKA3 MUTATED 4 1 1
SKA3 WILD-TYPE 58 50 30
'SKA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S604.  Gene #62: 'SKA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
SKA3 MUTATED 2 4 0
SKA3 WILD-TYPE 73 41 24
'DAAM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S605.  Gene #63: 'DAAM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
DAAM1 MUTATED 2 3 1
DAAM1 WILD-TYPE 64 62 13
'DAAM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S606.  Gene #63: 'DAAM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
DAAM1 MUTATED 3 1 1 1
DAAM1 WILD-TYPE 35 28 44 33
'DAAM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S607.  Gene #63: 'DAAM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
DAAM1 MUTATED 1 0 1 0 2
DAAM1 WILD-TYPE 33 16 10 11 11
'DAAM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S608.  Gene #63: 'DAAM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
DAAM1 MUTATED 1 0 0 0 0 2 1
DAAM1 WILD-TYPE 11 17 21 9 6 12 5
'DAAM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S609.  Gene #63: 'DAAM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
DAAM1 MUTATED 4 2 0
DAAM1 WILD-TYPE 67 41 32
'DAAM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S610.  Gene #63: 'DAAM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
DAAM1 MUTATED 3 3 0
DAAM1 WILD-TYPE 64 60 16
'DAAM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S611.  Gene #63: 'DAAM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
DAAM1 MUTATED 2 2 2 0
DAAM1 WILD-TYPE 60 34 26 20
'DAAM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S612.  Gene #63: 'DAAM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
DAAM1 MUTATED 5 1 0
DAAM1 WILD-TYPE 84 34 22
'DAAM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S613.  Gene #63: 'DAAM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
DAAM1 MUTATED 3 2 0
DAAM1 WILD-TYPE 59 49 31
'DAAM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00535 (Fisher's exact test), Q value = 1

Table S614.  Gene #63: 'DAAM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
DAAM1 MUTATED 0 5 0
DAAM1 WILD-TYPE 75 40 24

Figure S33.  Get High-res Image Gene #63: 'DAAM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MSH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S615.  Gene #64: 'MSH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
MSH2 MUTATED 3 1 0
MSH2 WILD-TYPE 63 64 14
'MSH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S616.  Gene #64: 'MSH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
MSH2 MUTATED 1 1 0 2
MSH2 WILD-TYPE 37 28 45 32
'MSH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0569 (Fisher's exact test), Q value = 1

Table S617.  Gene #64: 'MSH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
MSH2 MUTATED 0 0 1 1 2
MSH2 WILD-TYPE 34 16 10 10 11
'MSH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S618.  Gene #64: 'MSH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
MSH2 MUTATED 0 1 0 0 0 2 1
MSH2 WILD-TYPE 12 16 21 9 6 12 5
'MSH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S619.  Gene #64: 'MSH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
MSH2 MUTATED 1 1 2
MSH2 WILD-TYPE 70 42 30
'MSH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S620.  Gene #64: 'MSH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
MSH2 MUTATED 2 1 1
MSH2 WILD-TYPE 65 62 15
'MSH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S621.  Gene #64: 'MSH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
MSH2 MUTATED 1 1 2 0
MSH2 WILD-TYPE 61 35 26 20
'MSH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S622.  Gene #64: 'MSH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
MSH2 MUTATED 2 1 1
MSH2 WILD-TYPE 87 34 21
'MSH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S623.  Gene #64: 'MSH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
MSH2 MUTATED 2 2 0
MSH2 WILD-TYPE 60 49 31
'MSH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0394 (Fisher's exact test), Q value = 1

Table S624.  Gene #64: 'MSH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
MSH2 MUTATED 0 2 2
MSH2 WILD-TYPE 75 43 22

Figure S34.  Get High-res Image Gene #64: 'MSH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NUP210L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0973 (Fisher's exact test), Q value = 1

Table S625.  Gene #65: 'NUP210L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
NUP210L MUTATED 4 0 1
NUP210L WILD-TYPE 62 65 13
'NUP210L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S626.  Gene #65: 'NUP210L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
NUP210L MUTATED 1 1 1 2
NUP210L WILD-TYPE 37 28 44 32
'NUP210L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 1

Table S627.  Gene #65: 'NUP210L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
NUP210L MUTATED 0 3 2 0 0
NUP210L WILD-TYPE 34 13 9 11 13

Figure S35.  Get High-res Image Gene #65: 'NUP210L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NUP210L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0937 (Fisher's exact test), Q value = 1

Table S628.  Gene #65: 'NUP210L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
NUP210L MUTATED 0 3 0 1 0 0 1
NUP210L WILD-TYPE 12 14 21 8 6 14 5
'NUP210L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 1

Table S629.  Gene #65: 'NUP210L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
NUP210L MUTATED 3 2 0
NUP210L WILD-TYPE 68 41 32
'NUP210L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S630.  Gene #65: 'NUP210L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
NUP210L MUTATED 2 3 0
NUP210L WILD-TYPE 65 60 16
'NUP210L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S631.  Gene #65: 'NUP210L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
NUP210L MUTATED 1 2 2 0
NUP210L WILD-TYPE 61 34 26 20
'NUP210L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S632.  Gene #65: 'NUP210L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
NUP210L MUTATED 4 1 0
NUP210L WILD-TYPE 85 34 22
'NUP210L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S633.  Gene #65: 'NUP210L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
NUP210L MUTATED 3 2 0
NUP210L WILD-TYPE 59 49 31
'NUP210L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S634.  Gene #65: 'NUP210L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
NUP210L MUTATED 3 2 0
NUP210L WILD-TYPE 72 43 24
'GPR98 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0797 (Fisher's exact test), Q value = 1

Table S635.  Gene #66: 'GPR98 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
GPR98 MUTATED 7 1 0
GPR98 WILD-TYPE 59 64 14
'GPR98 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S636.  Gene #66: 'GPR98 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
GPR98 MUTATED 2 2 1 3
GPR98 WILD-TYPE 36 27 44 31
'GPR98 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S637.  Gene #66: 'GPR98 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
GPR98 MUTATED 1 3 1 1 1
GPR98 WILD-TYPE 33 13 10 10 12
'GPR98 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00645 (Fisher's exact test), Q value = 1

Table S638.  Gene #66: 'GPR98 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
GPR98 MUTATED 0 4 0 0 1 0 2
GPR98 WILD-TYPE 12 13 21 9 5 14 4

Figure S36.  Get High-res Image Gene #66: 'GPR98 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPR98 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S639.  Gene #66: 'GPR98 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
GPR98 MUTATED 4 3 1
GPR98 WILD-TYPE 67 40 31
'GPR98 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S640.  Gene #66: 'GPR98 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
GPR98 MUTATED 5 2 1
GPR98 WILD-TYPE 62 61 15
'GPR98 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0443 (Fisher's exact test), Q value = 1

Table S641.  Gene #66: 'GPR98 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
GPR98 MUTATED 1 3 4 0
GPR98 WILD-TYPE 61 33 24 20

Figure S37.  Get High-res Image Gene #66: 'GPR98 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPR98 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S642.  Gene #66: 'GPR98 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
GPR98 MUTATED 5 2 1
GPR98 WILD-TYPE 84 33 21
'GPR98 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S643.  Gene #66: 'GPR98 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
GPR98 MUTATED 3 4 1
GPR98 WILD-TYPE 59 47 30
'GPR98 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S644.  Gene #66: 'GPR98 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
GPR98 MUTATED 2 5 1
GPR98 WILD-TYPE 73 40 23
'CD2AP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S645.  Gene #67: 'CD2AP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
CD2AP MUTATED 1 1 1
CD2AP WILD-TYPE 65 64 13
'CD2AP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S646.  Gene #67: 'CD2AP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
CD2AP MUTATED 2 0 1 0
CD2AP WILD-TYPE 36 29 44 34
'CD2AP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S647.  Gene #67: 'CD2AP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
CD2AP MUTATED 0 0 1 1 1
CD2AP WILD-TYPE 34 16 10 10 12
'CD2AP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S648.  Gene #67: 'CD2AP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
CD2AP MUTATED 0 0 1 0 0 1 1
CD2AP WILD-TYPE 12 17 20 9 6 13 5
'CD2AP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S649.  Gene #67: 'CD2AP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
CD2AP MUTATED 2 1 0
CD2AP WILD-TYPE 69 42 32
'CD2AP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S650.  Gene #67: 'CD2AP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
CD2AP MUTATED 1 2 0
CD2AP WILD-TYPE 66 61 16
'CD2AP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S651.  Gene #67: 'CD2AP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
CD2AP MUTATED 1 1 1 0
CD2AP WILD-TYPE 61 35 27 20
'CD2AP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S652.  Gene #67: 'CD2AP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
CD2AP MUTATED 3 0 0
CD2AP WILD-TYPE 86 35 22
'RREB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S653.  Gene #68: 'RREB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
RREB1 MUTATED 6 3 0
RREB1 WILD-TYPE 60 62 14
'RREB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S654.  Gene #68: 'RREB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
RREB1 MUTATED 3 1 2 3
RREB1 WILD-TYPE 35 28 43 31
'RREB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S655.  Gene #68: 'RREB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
RREB1 MUTATED 3 0 1 1 0
RREB1 WILD-TYPE 31 16 10 10 13
'RREB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S656.  Gene #68: 'RREB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
RREB1 MUTATED 1 0 1 0 0 1 2
RREB1 WILD-TYPE 11 17 20 9 6 13 4
'RREB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S657.  Gene #68: 'RREB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
RREB1 MUTATED 3 3 3
RREB1 WILD-TYPE 68 40 29
'RREB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S658.  Gene #68: 'RREB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
RREB1 MUTATED 5 3 1
RREB1 WILD-TYPE 62 60 15
'RREB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S659.  Gene #68: 'RREB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
RREB1 MUTATED 1 3 3 2
RREB1 WILD-TYPE 61 33 25 18
'RREB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S660.  Gene #68: 'RREB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
RREB1 MUTATED 6 2 1
RREB1 WILD-TYPE 83 33 21
'RREB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S661.  Gene #68: 'RREB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
RREB1 MUTATED 2 4 3
RREB1 WILD-TYPE 60 47 28
'RREB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S662.  Gene #68: 'RREB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
RREB1 MUTATED 4 3 2
RREB1 WILD-TYPE 71 42 22
'KIAA0586 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S663.  Gene #69: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
KIAA0586 MUTATED 3 2 1
KIAA0586 WILD-TYPE 63 63 13
'KIAA0586 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S664.  Gene #69: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
KIAA0586 MUTATED 3 2 0 1
KIAA0586 WILD-TYPE 35 27 45 33
'KIAA0586 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S665.  Gene #69: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
KIAA0586 MUTATED 2 1 1 1 1
KIAA0586 WILD-TYPE 32 15 10 10 12
'KIAA0586 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S666.  Gene #69: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
KIAA0586 MUTATED 0 1 2 0 0 2 1
KIAA0586 WILD-TYPE 12 16 19 9 6 12 5
'KIAA0586 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S667.  Gene #69: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
KIAA0586 MUTATED 2 3 1
KIAA0586 WILD-TYPE 69 40 31
'KIAA0586 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S668.  Gene #69: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
KIAA0586 MUTATED 5 1 0
KIAA0586 WILD-TYPE 62 62 16
'KIAA0586 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S669.  Gene #69: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
KIAA0586 MUTATED 3 2 1 0
KIAA0586 WILD-TYPE 59 34 27 20
'KIAA0586 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S670.  Gene #69: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
KIAA0586 MUTATED 4 2 0
KIAA0586 WILD-TYPE 85 33 22
'KIAA0586 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S671.  Gene #69: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
KIAA0586 MUTATED 4 2 0
KIAA0586 WILD-TYPE 58 49 31
'KIAA0586 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0073 (Fisher's exact test), Q value = 1

Table S672.  Gene #69: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
KIAA0586 MUTATED 0 5 1
KIAA0586 WILD-TYPE 75 40 23

Figure S38.  Get High-res Image Gene #69: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GNAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00943 (Fisher's exact test), Q value = 1

Table S673.  Gene #70: 'GNAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
GNAS MUTATED 8 0 1
GNAS WILD-TYPE 58 65 13

Figure S39.  Get High-res Image Gene #70: 'GNAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GNAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S674.  Gene #70: 'GNAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
GNAS MUTATED 3 2 1 3
GNAS WILD-TYPE 35 27 44 31
'GNAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S675.  Gene #70: 'GNAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
GNAS MUTATED 1 2 2 0 0
GNAS WILD-TYPE 33 14 9 11 13
'GNAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S676.  Gene #70: 'GNAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
GNAS MUTATED 0 1 1 1 0 1 1
GNAS WILD-TYPE 12 16 20 8 6 13 5
'GNAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S677.  Gene #70: 'GNAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
GNAS MUTATED 5 3 1
GNAS WILD-TYPE 66 40 31
'GNAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S678.  Gene #70: 'GNAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
GNAS MUTATED 5 3 1
GNAS WILD-TYPE 62 60 15
'GNAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S679.  Gene #70: 'GNAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
GNAS MUTATED 5 2 1 1
GNAS WILD-TYPE 57 34 27 19
'GNAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S680.  Gene #70: 'GNAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
GNAS MUTATED 7 2 0
GNAS WILD-TYPE 82 33 22
'GNAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S681.  Gene #70: 'GNAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
GNAS MUTATED 5 3 1
GNAS WILD-TYPE 57 48 30
'GNAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S682.  Gene #70: 'GNAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
GNAS MUTATED 6 3 0
GNAS WILD-TYPE 69 42 24
'FAR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S683.  Gene #71: 'FAR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
FAR1 MUTATED 3 1 0
FAR1 WILD-TYPE 63 64 14
'FAR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S684.  Gene #71: 'FAR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
FAR1 MUTATED 2 0 0 2
FAR1 WILD-TYPE 36 29 45 32
'FAR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S685.  Gene #71: 'FAR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
FAR1 MUTATED 0 2 1 0 0
FAR1 WILD-TYPE 34 14 10 11 13
'FAR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S686.  Gene #71: 'FAR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
FAR1 MUTATED 0 2 0 0 0 0 1
FAR1 WILD-TYPE 12 15 21 9 6 14 5
'FAR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S687.  Gene #71: 'FAR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
FAR1 MUTATED 3 1 0
FAR1 WILD-TYPE 68 42 32
'FAR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S688.  Gene #71: 'FAR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
FAR1 MUTATED 1 3 0
FAR1 WILD-TYPE 66 60 16
'FAR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S689.  Gene #71: 'FAR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
FAR1 MUTATED 1 1 2 0
FAR1 WILD-TYPE 61 35 26 20
'FAR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S690.  Gene #71: 'FAR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
FAR1 MUTATED 4 0 0
FAR1 WILD-TYPE 85 35 22
'FAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S691.  Gene #71: 'FAR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
FAR1 MUTATED 3 1 0
FAR1 WILD-TYPE 59 50 31
'FAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S692.  Gene #71: 'FAR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
FAR1 MUTATED 3 1 0
FAR1 WILD-TYPE 72 44 24
'OR2T4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S693.  Gene #72: 'OR2T4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
OR2T4 MUTATED 3 2 1
OR2T4 WILD-TYPE 63 63 13
'OR2T4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S694.  Gene #72: 'OR2T4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
OR2T4 MUTATED 1 2 3 0
OR2T4 WILD-TYPE 37 27 42 34
'OR2T4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00821 (Fisher's exact test), Q value = 1

Table S695.  Gene #72: 'OR2T4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
OR2T4 MUTATED 0 1 3 0 0
OR2T4 WILD-TYPE 34 15 8 11 13

Figure S40.  Get High-res Image Gene #72: 'OR2T4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'OR2T4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0665 (Fisher's exact test), Q value = 1

Table S696.  Gene #72: 'OR2T4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
OR2T4 MUTATED 0 1 0 2 0 0 1
OR2T4 WILD-TYPE 12 16 21 7 6 14 5
'OR2T4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S697.  Gene #72: 'OR2T4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
OR2T4 MUTATED 3 1 2
OR2T4 WILD-TYPE 68 42 30
'OR2T4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S698.  Gene #72: 'OR2T4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
OR2T4 MUTATED 3 3 0
OR2T4 WILD-TYPE 64 60 16
'OR2T4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 1

Table S699.  Gene #72: 'OR2T4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
OR2T4 MUTATED 3 3 0 0
OR2T4 WILD-TYPE 59 33 28 20
'OR2T4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S700.  Gene #72: 'OR2T4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
OR2T4 MUTATED 4 2 0
OR2T4 WILD-TYPE 85 33 22
'OR2T4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S701.  Gene #72: 'OR2T4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
OR2T4 MUTATED 4 1 1
OR2T4 WILD-TYPE 58 50 30
'OR2T4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S702.  Gene #72: 'OR2T4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
OR2T4 MUTATED 3 3 0
OR2T4 WILD-TYPE 72 42 24
'GPR50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S703.  Gene #73: 'GPR50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
GPR50 MUTATED 2 2 1
GPR50 WILD-TYPE 64 63 13
'GPR50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S704.  Gene #73: 'GPR50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
GPR50 MUTATED 1 2 1 1
GPR50 WILD-TYPE 37 27 44 33
'GPR50 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S705.  Gene #73: 'GPR50 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
GPR50 MUTATED 1 0 0 0 2
GPR50 WILD-TYPE 33 16 11 11 11
'GPR50 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S706.  Gene #73: 'GPR50 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
GPR50 MUTATED 0 1 0 0 0 1 1
GPR50 WILD-TYPE 12 16 21 9 6 13 5
'GPR50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S707.  Gene #73: 'GPR50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
GPR50 MUTATED 2 1 2
GPR50 WILD-TYPE 69 42 30
'GPR50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S708.  Gene #73: 'GPR50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
GPR50 MUTATED 2 2 1
GPR50 WILD-TYPE 65 61 15
'GPR50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 1

Table S709.  Gene #73: 'GPR50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
GPR50 MUTATED 0 2 3 0
GPR50 WILD-TYPE 62 34 25 20

Figure S41.  Get High-res Image Gene #73: 'GPR50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPR50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S710.  Gene #73: 'GPR50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
GPR50 MUTATED 2 2 1
GPR50 WILD-TYPE 87 33 21
'GPR50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S711.  Gene #73: 'GPR50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
GPR50 MUTATED 0 2 2
GPR50 WILD-TYPE 62 49 29
'GPR50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S712.  Gene #73: 'GPR50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
GPR50 MUTATED 1 2 1
GPR50 WILD-TYPE 74 43 23
'TAX1BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0583 (Fisher's exact test), Q value = 1

Table S713.  Gene #74: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
TAX1BP1 MUTATED 5 0 0
TAX1BP1 WILD-TYPE 61 65 14
'TAX1BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S714.  Gene #74: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
TAX1BP1 MUTATED 2 1 0 2
TAX1BP1 WILD-TYPE 36 28 45 32
'TAX1BP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S715.  Gene #74: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
TAX1BP1 MUTATED 1 1 1 1 0
TAX1BP1 WILD-TYPE 33 15 10 10 13
'TAX1BP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S716.  Gene #74: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
TAX1BP1 MUTATED 0 1 0 0 0 2 1
TAX1BP1 WILD-TYPE 12 16 21 9 6 12 5
'TAX1BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S717.  Gene #74: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
TAX1BP1 MUTATED 2 1 2
TAX1BP1 WILD-TYPE 69 42 30
'TAX1BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S718.  Gene #74: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
TAX1BP1 MUTATED 3 1 1
TAX1BP1 WILD-TYPE 64 62 15
'TAX1BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0366 (Fisher's exact test), Q value = 1

Table S719.  Gene #74: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
TAX1BP1 MUTATED 0 1 3 1
TAX1BP1 WILD-TYPE 62 35 25 19

Figure S42.  Get High-res Image Gene #74: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TAX1BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S720.  Gene #74: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
TAX1BP1 MUTATED 4 1 0
TAX1BP1 WILD-TYPE 85 34 22
'TAX1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S721.  Gene #74: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
TAX1BP1 MUTATED 2 3 0
TAX1BP1 WILD-TYPE 60 48 31
'TAX1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S722.  Gene #74: 'TAX1BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
TAX1BP1 MUTATED 2 2 1
TAX1BP1 WILD-TYPE 73 43 23
'CCDC33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S723.  Gene #75: 'CCDC33 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
CCDC33 MUTATED 1 1 1
CCDC33 WILD-TYPE 65 64 13
'CCDC33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S724.  Gene #75: 'CCDC33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
CCDC33 MUTATED 2 0 1 0
CCDC33 WILD-TYPE 36 29 44 34
'CCDC33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S725.  Gene #75: 'CCDC33 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
CCDC33 MUTATED 3 0 0
CCDC33 WILD-TYPE 68 43 32
'CCDC33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S726.  Gene #75: 'CCDC33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
CCDC33 MUTATED 1 2 0
CCDC33 WILD-TYPE 66 61 16
'CCDC33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S727.  Gene #75: 'CCDC33 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
CCDC33 MUTATED 1 0 2 0
CCDC33 WILD-TYPE 61 36 26 20
'CCDC33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S728.  Gene #75: 'CCDC33 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
CCDC33 MUTATED 3 0 0
CCDC33 WILD-TYPE 86 35 22
'JAK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S729.  Gene #76: 'JAK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
JAK2 MUTATED 4 0 0
JAK2 WILD-TYPE 62 65 14
'JAK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S730.  Gene #76: 'JAK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
JAK2 MUTATED 1 1 0 2
JAK2 WILD-TYPE 37 28 45 32
'JAK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S731.  Gene #76: 'JAK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
JAK2 MUTATED 0 2 1 1 0
JAK2 WILD-TYPE 34 14 10 10 13
'JAK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S732.  Gene #76: 'JAK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
JAK2 MUTATED 0 2 0 0 0 1 1
JAK2 WILD-TYPE 12 15 21 9 6 13 5
'JAK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S733.  Gene #76: 'JAK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
JAK2 MUTATED 2 1 1
JAK2 WILD-TYPE 69 42 31
'JAK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S734.  Gene #76: 'JAK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
JAK2 MUTATED 2 2 0
JAK2 WILD-TYPE 65 61 16
'JAK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 1

Table S735.  Gene #76: 'JAK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
JAK2 MUTATED 0 1 3 0
JAK2 WILD-TYPE 62 35 25 20

Figure S43.  Get High-res Image Gene #76: 'JAK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'JAK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S736.  Gene #76: 'JAK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
JAK2 MUTATED 3 1 0
JAK2 WILD-TYPE 86 34 22
'JAK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S737.  Gene #76: 'JAK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
JAK2 MUTATED 2 2 0
JAK2 WILD-TYPE 60 49 31
'JAK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S738.  Gene #76: 'JAK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
JAK2 MUTATED 2 1 1
JAK2 WILD-TYPE 73 44 23
'COL28A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S739.  Gene #77: 'COL28A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
COL28A1 MUTATED 4 1 0
COL28A1 WILD-TYPE 62 64 14
'COL28A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S740.  Gene #77: 'COL28A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
COL28A1 MUTATED 2 0 1 2
COL28A1 WILD-TYPE 36 29 44 32
'COL28A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 1

Table S741.  Gene #77: 'COL28A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
COL28A1 MUTATED 0 3 1 0 0
COL28A1 WILD-TYPE 34 13 10 11 13

Figure S44.  Get High-res Image Gene #77: 'COL28A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'COL28A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0772 (Fisher's exact test), Q value = 1

Table S742.  Gene #77: 'COL28A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
COL28A1 MUTATED 0 3 0 0 0 0 1
COL28A1 WILD-TYPE 12 14 21 9 6 14 5
'COL28A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S743.  Gene #77: 'COL28A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
COL28A1 MUTATED 4 1 0
COL28A1 WILD-TYPE 67 42 32
'COL28A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S744.  Gene #77: 'COL28A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
COL28A1 MUTATED 2 3 0
COL28A1 WILD-TYPE 65 60 16
'COL28A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S745.  Gene #77: 'COL28A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
COL28A1 MUTATED 1 1 3 0
COL28A1 WILD-TYPE 61 35 25 20
'COL28A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S746.  Gene #77: 'COL28A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
COL28A1 MUTATED 5 0 0
COL28A1 WILD-TYPE 84 35 22
'COL28A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S747.  Gene #77: 'COL28A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
COL28A1 MUTATED 3 2 0
COL28A1 WILD-TYPE 59 49 31
'COL28A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S748.  Gene #77: 'COL28A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
COL28A1 MUTATED 3 2 0
COL28A1 WILD-TYPE 72 43 24
'KLHL20 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S749.  Gene #78: 'KLHL20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
KLHL20 MUTATED 2 1 0
KLHL20 WILD-TYPE 64 64 14
'KLHL20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S750.  Gene #78: 'KLHL20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
KLHL20 MUTATED 1 0 0 2
KLHL20 WILD-TYPE 37 29 45 32
'KLHL20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S751.  Gene #78: 'KLHL20 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
KLHL20 MUTATED 0 1 1 0 1
KLHL20 WILD-TYPE 34 15 10 11 12
'KLHL20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S752.  Gene #78: 'KLHL20 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
KLHL20 MUTATED 0 1 0 0 0 1 1
KLHL20 WILD-TYPE 12 16 21 9 6 13 5
'KLHL20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S753.  Gene #78: 'KLHL20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
KLHL20 MUTATED 2 1 0
KLHL20 WILD-TYPE 69 42 32
'KLHL20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S754.  Gene #78: 'KLHL20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
KLHL20 MUTATED 1 2 0
KLHL20 WILD-TYPE 66 61 16
'KLHL20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S755.  Gene #78: 'KLHL20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
KLHL20 MUTATED 1 1 1 0
KLHL20 WILD-TYPE 61 35 27 20
'KLHL20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S756.  Gene #78: 'KLHL20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
KLHL20 MUTATED 3 0 0
KLHL20 WILD-TYPE 86 35 22
'KLHL20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S757.  Gene #78: 'KLHL20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
KLHL20 MUTATED 2 1 0
KLHL20 WILD-TYPE 60 50 31
'KLHL20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S758.  Gene #78: 'KLHL20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
KLHL20 MUTATED 1 2 0
KLHL20 WILD-TYPE 74 43 24
'WRN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S759.  Gene #79: 'WRN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
WRN MUTATED 3 0 1
WRN WILD-TYPE 63 65 13
'WRN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S760.  Gene #79: 'WRN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
WRN MUTATED 1 1 0 2
WRN WILD-TYPE 37 28 45 32
'WRN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S761.  Gene #79: 'WRN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
WRN MUTATED 1 1 2
WRN WILD-TYPE 70 42 30
'WRN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S762.  Gene #79: 'WRN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
WRN MUTATED 2 2 0
WRN WILD-TYPE 65 61 16
'WRN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 1

Table S763.  Gene #79: 'WRN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
WRN MUTATED 0 1 3 0
WRN WILD-TYPE 62 35 25 20

Figure S45.  Get High-res Image Gene #79: 'WRN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WRN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S764.  Gene #79: 'WRN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
WRN MUTATED 2 1 1
WRN WILD-TYPE 87 34 21
'WRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S765.  Gene #79: 'WRN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
WRN MUTATED 0 3 1
WRN WILD-TYPE 62 48 30
'WRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S766.  Gene #79: 'WRN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
WRN MUTATED 2 0 2
WRN WILD-TYPE 73 45 22
'P2RY1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S767.  Gene #80: 'P2RY1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
P2RY1 MUTATED 1 3 1
P2RY1 WILD-TYPE 65 62 13
'P2RY1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 1

Table S768.  Gene #80: 'P2RY1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
P2RY1 MUTATED 2 0 3 0
P2RY1 WILD-TYPE 36 29 42 34
'P2RY1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S769.  Gene #80: 'P2RY1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
P2RY1 MUTATED 2 0 1 1 1
P2RY1 WILD-TYPE 32 16 10 10 12
'P2RY1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.076

Table S770.  Gene #80: 'P2RY1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
P2RY1 MUTATED 0 0 0 0 2 0 3
P2RY1 WILD-TYPE 12 17 21 9 4 14 3

Figure S46.  Get High-res Image Gene #80: 'P2RY1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'P2RY1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S771.  Gene #80: 'P2RY1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
P2RY1 MUTATED 4 1 0
P2RY1 WILD-TYPE 67 42 32
'P2RY1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S772.  Gene #80: 'P2RY1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
P2RY1 MUTATED 3 2 0
P2RY1 WILD-TYPE 64 61 16
'P2RY1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S773.  Gene #80: 'P2RY1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
P2RY1 MUTATED 3 1 1 0
P2RY1 WILD-TYPE 59 35 27 20
'P2RY1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S774.  Gene #80: 'P2RY1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
P2RY1 MUTATED 5 0 0
P2RY1 WILD-TYPE 84 35 22
'P2RY1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S775.  Gene #80: 'P2RY1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
P2RY1 MUTATED 4 0 1
P2RY1 WILD-TYPE 58 51 30
'P2RY1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S776.  Gene #80: 'P2RY1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
P2RY1 MUTATED 4 1 0
P2RY1 WILD-TYPE 71 44 24
'RBL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S777.  Gene #81: 'RBL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
RBL2 MUTATED 2 2 0
RBL2 WILD-TYPE 64 63 14
'RBL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S778.  Gene #81: 'RBL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
RBL2 MUTATED 1 0 2 1
RBL2 WILD-TYPE 37 29 43 33
'RBL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S779.  Gene #81: 'RBL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
RBL2 MUTATED 1 1 1 0 1
RBL2 WILD-TYPE 33 15 10 11 12
'RBL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S780.  Gene #81: 'RBL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
RBL2 MUTATED 0 2 1 0 0 0 1
RBL2 WILD-TYPE 12 15 20 9 6 14 5
'RBL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S781.  Gene #81: 'RBL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
RBL2 MUTATED 1 2 1
RBL2 WILD-TYPE 70 41 31
'RBL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S782.  Gene #81: 'RBL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
RBL2 MUTATED 2 1 1
RBL2 WILD-TYPE 65 62 15
'RBL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S783.  Gene #81: 'RBL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
RBL2 MUTATED 2 1 1 0
RBL2 WILD-TYPE 60 35 27 20
'RBL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S784.  Gene #81: 'RBL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
RBL2 MUTATED 3 0 1
RBL2 WILD-TYPE 86 35 21
'RBL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S785.  Gene #81: 'RBL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
RBL2 MUTATED 2 1 1
RBL2 WILD-TYPE 60 50 30
'RBL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S786.  Gene #81: 'RBL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
RBL2 MUTATED 2 1 1
RBL2 WILD-TYPE 73 44 23
'BCLAF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S787.  Gene #82: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
BCLAF1 MUTATED 2 4 1
BCLAF1 WILD-TYPE 64 61 13
'BCLAF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S788.  Gene #82: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
BCLAF1 MUTATED 1 0 4 2
BCLAF1 WILD-TYPE 37 29 41 32
'BCLAF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S789.  Gene #82: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
BCLAF1 MUTATED 1 2 1 1 0
BCLAF1 WILD-TYPE 33 14 10 10 13
'BCLAF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S790.  Gene #82: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
BCLAF1 MUTATED 0 2 1 0 1 0 1
BCLAF1 WILD-TYPE 12 15 20 9 5 14 5
'BCLAF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S791.  Gene #82: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
BCLAF1 MUTATED 5 1 1
BCLAF1 WILD-TYPE 66 42 31
'BCLAF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S792.  Gene #82: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
BCLAF1 MUTATED 2 4 1
BCLAF1 WILD-TYPE 65 59 15
'BCLAF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S793.  Gene #82: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
BCLAF1 MUTATED 3 1 2 1
BCLAF1 WILD-TYPE 59 35 26 19
'BCLAF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S794.  Gene #82: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
BCLAF1 MUTATED 6 0 1
BCLAF1 WILD-TYPE 83 35 21
'BCLAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S795.  Gene #82: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
BCLAF1 MUTATED 5 1 1
BCLAF1 WILD-TYPE 57 50 30
'BCLAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S796.  Gene #82: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
BCLAF1 MUTATED 5 1 1
BCLAF1 WILD-TYPE 70 44 23
'MORF4L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S797.  Gene #83: 'MORF4L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
MORF4L1 MUTATED 1 2 0
MORF4L1 WILD-TYPE 65 63 14
'MORF4L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S798.  Gene #83: 'MORF4L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
MORF4L1 MUTATED 1 0 1 1
MORF4L1 WILD-TYPE 37 29 44 33
'MORF4L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 1

Table S799.  Gene #83: 'MORF4L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
MORF4L1 MUTATED 0 3 0 0 0
MORF4L1 WILD-TYPE 34 13 11 11 13

Figure S47.  Get High-res Image Gene #83: 'MORF4L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MORF4L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S800.  Gene #83: 'MORF4L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
MORF4L1 MUTATED 0 3 0 0 0 0 0
MORF4L1 WILD-TYPE 12 14 21 9 6 14 6
'MORF4L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S801.  Gene #83: 'MORF4L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
MORF4L1 MUTATED 3 0 0
MORF4L1 WILD-TYPE 68 43 32
'MORF4L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S802.  Gene #83: 'MORF4L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
MORF4L1 MUTATED 0 3 0
MORF4L1 WILD-TYPE 67 60 16
'MORF4L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S803.  Gene #83: 'MORF4L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
MORF4L1 MUTATED 2 0 1 0
MORF4L1 WILD-TYPE 60 36 27 20
'MORF4L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S804.  Gene #83: 'MORF4L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
MORF4L1 MUTATED 3 0 0
MORF4L1 WILD-TYPE 86 35 22
'MORF4L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S805.  Gene #83: 'MORF4L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
MORF4L1 MUTATED 3 0 0
MORF4L1 WILD-TYPE 59 51 31
'MORF4L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S806.  Gene #83: 'MORF4L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
MORF4L1 MUTATED 3 0 0
MORF4L1 WILD-TYPE 72 45 24
'SEPHS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S807.  Gene #84: 'SEPHS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
SEPHS2 MUTATED 3 2 0
SEPHS2 WILD-TYPE 63 63 14
'SEPHS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S808.  Gene #84: 'SEPHS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
SEPHS2 MUTATED 1 1 3 0
SEPHS2 WILD-TYPE 37 28 42 34
'SEPHS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S809.  Gene #84: 'SEPHS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
SEPHS2 MUTATED 2 1 0 2 0
SEPHS2 WILD-TYPE 32 15 11 9 13
'SEPHS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S810.  Gene #84: 'SEPHS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
SEPHS2 MUTATED 0 1 2 0 0 1 1
SEPHS2 WILD-TYPE 12 16 19 9 6 13 5
'SEPHS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S811.  Gene #84: 'SEPHS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
SEPHS2 MUTATED 3 1 1
SEPHS2 WILD-TYPE 68 42 31
'SEPHS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S812.  Gene #84: 'SEPHS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
SEPHS2 MUTATED 1 3 1
SEPHS2 WILD-TYPE 66 60 15
'SEPHS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S813.  Gene #84: 'SEPHS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
SEPHS2 MUTATED 3 1 1 0
SEPHS2 WILD-TYPE 59 35 27 20
'SEPHS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S814.  Gene #84: 'SEPHS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
SEPHS2 MUTATED 3 1 1
SEPHS2 WILD-TYPE 86 34 21
'SEPHS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S815.  Gene #84: 'SEPHS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
SEPHS2 MUTATED 3 1 1
SEPHS2 WILD-TYPE 59 50 30
'SEPHS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S816.  Gene #84: 'SEPHS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
SEPHS2 MUTATED 3 1 1
SEPHS2 WILD-TYPE 72 44 23
'HELZ MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S817.  Gene #85: 'HELZ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
HELZ MUTATED 3 2 0
HELZ WILD-TYPE 63 63 14
'HELZ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S818.  Gene #85: 'HELZ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
HELZ MUTATED 1 1 2 1
HELZ WILD-TYPE 37 28 43 33
'HELZ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 1

Table S819.  Gene #85: 'HELZ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
HELZ MUTATED 0 3 1 0 0
HELZ WILD-TYPE 34 13 10 11 13

Figure S48.  Get High-res Image Gene #85: 'HELZ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HELZ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0788 (Fisher's exact test), Q value = 1

Table S820.  Gene #85: 'HELZ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
HELZ MUTATED 0 3 0 0 0 0 1
HELZ WILD-TYPE 12 14 21 9 6 14 5
'HELZ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 1

Table S821.  Gene #85: 'HELZ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
HELZ MUTATED 3 2 0
HELZ WILD-TYPE 68 41 32
'HELZ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S822.  Gene #85: 'HELZ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
HELZ MUTATED 2 3 0
HELZ WILD-TYPE 65 60 16
'HELZ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S823.  Gene #85: 'HELZ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
HELZ MUTATED 2 2 1 0
HELZ WILD-TYPE 60 34 27 20
'HELZ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S824.  Gene #85: 'HELZ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
HELZ MUTATED 4 1 0
HELZ WILD-TYPE 85 34 22
'HELZ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S825.  Gene #85: 'HELZ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
HELZ MUTATED 3 2 0
HELZ WILD-TYPE 59 49 31
'HELZ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S826.  Gene #85: 'HELZ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
HELZ MUTATED 3 2 0
HELZ WILD-TYPE 72 43 24
'DOCK8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S827.  Gene #86: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
DOCK8 MUTATED 2 1 2
DOCK8 WILD-TYPE 64 64 12
'DOCK8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S828.  Gene #86: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
DOCK8 MUTATED 2 2 1 0
DOCK8 WILD-TYPE 36 27 44 34
'DOCK8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S829.  Gene #86: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
DOCK8 MUTATED 1 0 1 1 0
DOCK8 WILD-TYPE 33 16 10 10 13
'DOCK8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S830.  Gene #86: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
DOCK8 MUTATED 0 0 1 0 1 0 1
DOCK8 WILD-TYPE 12 17 20 9 5 14 5
'DOCK8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S831.  Gene #86: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
DOCK8 MUTATED 2 3 0
DOCK8 WILD-TYPE 69 40 32
'DOCK8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0816 (Fisher's exact test), Q value = 1

Table S832.  Gene #86: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
DOCK8 MUTATED 5 0 0
DOCK8 WILD-TYPE 62 63 16
'DOCK8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S833.  Gene #86: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
DOCK8 MUTATED 2 2 1 0
DOCK8 WILD-TYPE 60 34 27 20
'DOCK8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S834.  Gene #86: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
DOCK8 MUTATED 4 1 0
DOCK8 WILD-TYPE 85 34 22
'DOCK8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S835.  Gene #86: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
DOCK8 MUTATED 2 2 1
DOCK8 WILD-TYPE 60 49 30
'DOCK8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S836.  Gene #86: 'DOCK8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
DOCK8 MUTATED 2 3 0
DOCK8 WILD-TYPE 73 42 24
'KLK13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S837.  Gene #87: 'KLK13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
KLK13 MUTATED 2 3 0
KLK13 WILD-TYPE 64 62 14
'KLK13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S838.  Gene #87: 'KLK13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
KLK13 MUTATED 2 0 2 1
KLK13 WILD-TYPE 36 29 43 33
'KLK13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 1

Table S839.  Gene #87: 'KLK13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
KLK13 MUTATED 0 0 2 1 0
KLK13 WILD-TYPE 34 16 9 10 13

Figure S49.  Get High-res Image Gene #87: 'KLK13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KLK13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S840.  Gene #87: 'KLK13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
KLK13 MUTATED 0 0 0 1 0 1 1
KLK13 WILD-TYPE 12 17 21 8 6 13 5
'KLK13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S841.  Gene #87: 'KLK13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
KLK13 MUTATED 3 2 0
KLK13 WILD-TYPE 68 41 32
'KLK13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S842.  Gene #87: 'KLK13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
KLK13 MUTATED 2 3 0
KLK13 WILD-TYPE 65 60 16
'KLK13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S843.  Gene #87: 'KLK13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
KLK13 MUTATED 1 2 2 0
KLK13 WILD-TYPE 61 34 26 20
'KLK13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S844.  Gene #87: 'KLK13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
KLK13 MUTATED 4 1 0
KLK13 WILD-TYPE 85 34 22
'KLK13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S845.  Gene #87: 'KLK13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
KLK13 MUTATED 4 0 1
KLK13 WILD-TYPE 58 51 30
'KLK13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S846.  Gene #87: 'KLK13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
KLK13 MUTATED 3 2 0
KLK13 WILD-TYPE 72 43 24
'OXR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S847.  Gene #88: 'OXR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
OXR1 MUTATED 3 1 0
OXR1 WILD-TYPE 63 64 14
'OXR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S848.  Gene #88: 'OXR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
OXR1 MUTATED 1 1 1 1
OXR1 WILD-TYPE 37 28 44 33
'OXR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S849.  Gene #88: 'OXR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
OXR1 MUTATED 0 2 0 0 1
OXR1 WILD-TYPE 34 14 11 11 12
'OXR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S850.  Gene #88: 'OXR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
OXR1 MUTATED 0 2 0 0 0 1 0
OXR1 WILD-TYPE 12 15 21 9 6 13 6
'OXR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S851.  Gene #88: 'OXR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
OXR1 MUTATED 3 1 0
OXR1 WILD-TYPE 68 42 32
'OXR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S852.  Gene #88: 'OXR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
OXR1 MUTATED 3 1 0
OXR1 WILD-TYPE 64 62 16
'OXR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S853.  Gene #88: 'OXR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
OXR1 MUTATED 1 1 2 0
OXR1 WILD-TYPE 61 35 26 20
'OXR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S854.  Gene #88: 'OXR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
OXR1 MUTATED 3 1 0
OXR1 WILD-TYPE 86 34 22
'OXR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S855.  Gene #88: 'OXR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
OXR1 MUTATED 1 3 0
OXR1 WILD-TYPE 61 48 31
'OXR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S856.  Gene #88: 'OXR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
OXR1 MUTATED 2 2 0
OXR1 WILD-TYPE 73 43 24
'OR52D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S857.  Gene #89: 'OR52D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
OR52D1 MUTATED 2 1 0
OR52D1 WILD-TYPE 64 64 14
'OR52D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S858.  Gene #89: 'OR52D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
OR52D1 MUTATED 1 2 1 0
OR52D1 WILD-TYPE 37 27 44 34
'OR52D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 1

Table S859.  Gene #89: 'OR52D1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
OR52D1 MUTATED 1 0 3 0 0
OR52D1 WILD-TYPE 33 16 8 11 13

Figure S50.  Get High-res Image Gene #89: 'OR52D1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'OR52D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.09 (Fisher's exact test), Q value = 1

Table S860.  Gene #89: 'OR52D1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
OR52D1 MUTATED 0 0 1 2 0 0 1
OR52D1 WILD-TYPE 12 17 20 7 6 14 5
'OR52D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0617 (Fisher's exact test), Q value = 1

Table S861.  Gene #89: 'OR52D1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
OR52D1 MUTATED 0 3 1
OR52D1 WILD-TYPE 71 40 31
'OR52D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S862.  Gene #89: 'OR52D1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
OR52D1 MUTATED 3 0 1
OR52D1 WILD-TYPE 64 63 15
'OR52D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S863.  Gene #89: 'OR52D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
OR52D1 MUTATED 1 2 0 1
OR52D1 WILD-TYPE 61 34 28 19
'OR52D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S864.  Gene #89: 'OR52D1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
OR52D1 MUTATED 2 1 1
OR52D1 WILD-TYPE 87 34 21
'OR52D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S865.  Gene #89: 'OR52D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
OR52D1 MUTATED 1 2 1
OR52D1 WILD-TYPE 61 49 30
'OR52D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0588 (Fisher's exact test), Q value = 1

Table S866.  Gene #89: 'OR52D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
OR52D1 MUTATED 0 3 1
OR52D1 WILD-TYPE 75 42 23
'CSTF2T MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S867.  Gene #90: 'CSTF2T MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
CSTF2T MUTATED 2 1 0
CSTF2T WILD-TYPE 64 64 14
'CSTF2T MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S868.  Gene #90: 'CSTF2T MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
CSTF2T MUTATED 1 0 0 2
CSTF2T WILD-TYPE 37 29 45 32
'CSTF2T MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S869.  Gene #90: 'CSTF2T MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
CSTF2T MUTATED 1 1 1
CSTF2T WILD-TYPE 70 42 31
'CSTF2T MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S870.  Gene #90: 'CSTF2T MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
CSTF2T MUTATED 1 1 1
CSTF2T WILD-TYPE 66 62 15
'CSTF2T MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S871.  Gene #90: 'CSTF2T MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
CSTF2T MUTATED 0 1 1 1
CSTF2T WILD-TYPE 62 35 27 19
'CSTF2T MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S872.  Gene #90: 'CSTF2T MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
CSTF2T MUTATED 2 0 1
CSTF2T WILD-TYPE 87 35 21
'CSTF2T MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S873.  Gene #90: 'CSTF2T MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
CSTF2T MUTATED 1 2 0
CSTF2T WILD-TYPE 61 49 31
'CSTF2T MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S874.  Gene #90: 'CSTF2T MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
CSTF2T MUTATED 1 1 1
CSTF2T WILD-TYPE 74 44 23
'AP3B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S875.  Gene #91: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
AP3B1 MUTATED 2 2 0
AP3B1 WILD-TYPE 64 63 14
'AP3B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S876.  Gene #91: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
AP3B1 MUTATED 2 0 0 2
AP3B1 WILD-TYPE 36 29 45 32
'AP3B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S877.  Gene #91: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
AP3B1 MUTATED 1 0 1 0 2
AP3B1 WILD-TYPE 33 16 10 11 11
'AP3B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S878.  Gene #91: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
AP3B1 MUTATED 1 1 0 0 0 1 1
AP3B1 WILD-TYPE 11 16 21 9 6 13 5
'AP3B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S879.  Gene #91: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
AP3B1 MUTATED 2 1 1
AP3B1 WILD-TYPE 69 42 31
'AP3B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S880.  Gene #91: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
AP3B1 MUTATED 1 2 1
AP3B1 WILD-TYPE 66 61 15
'AP3B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S881.  Gene #91: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
AP3B1 MUTATED 2 1 1 0
AP3B1 WILD-TYPE 60 35 27 20
'AP3B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S882.  Gene #91: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
AP3B1 MUTATED 3 0 1
AP3B1 WILD-TYPE 86 35 21
'AP3B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S883.  Gene #91: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
AP3B1 MUTATED 2 1 1
AP3B1 WILD-TYPE 60 50 30
'AP3B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S884.  Gene #91: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
AP3B1 MUTATED 1 2 1
AP3B1 WILD-TYPE 74 43 23
'OMA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S885.  Gene #92: 'OMA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
OMA1 MUTATED 1 1 1
OMA1 WILD-TYPE 65 64 13
'OMA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S886.  Gene #92: 'OMA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
OMA1 MUTATED 2 0 0 1
OMA1 WILD-TYPE 36 29 45 33
'OMA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0555 (Fisher's exact test), Q value = 1

Table S887.  Gene #92: 'OMA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
OMA1 MUTATED 0 0 1 0 2
OMA1 WILD-TYPE 34 16 10 11 11
'OMA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0751 (Fisher's exact test), Q value = 1

Table S888.  Gene #92: 'OMA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
OMA1 MUTATED 0 0 0 0 0 2 1
OMA1 WILD-TYPE 12 17 21 9 6 12 5
'OMA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S889.  Gene #92: 'OMA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
OMA1 MUTATED 2 1 0
OMA1 WILD-TYPE 69 42 32
'OMA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S890.  Gene #92: 'OMA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
OMA1 MUTATED 1 2 0
OMA1 WILD-TYPE 66 61 16
'OMA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S891.  Gene #92: 'OMA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
OMA1 MUTATED 1 1 1 0
OMA1 WILD-TYPE 61 35 27 20
'OMA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S892.  Gene #92: 'OMA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
OMA1 MUTATED 3 0 0
OMA1 WILD-TYPE 86 35 22
'IYD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S893.  Gene #93: 'IYD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
IYD MUTATED 2 3 1
IYD WILD-TYPE 64 62 13
'IYD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S894.  Gene #93: 'IYD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
IYD MUTATED 1 1 3 1
IYD WILD-TYPE 37 28 42 33
'IYD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S895.  Gene #93: 'IYD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
IYD MUTATED 4 2 0
IYD WILD-TYPE 67 41 32
'IYD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S896.  Gene #93: 'IYD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
IYD MUTATED 3 3 0
IYD WILD-TYPE 64 60 16
'IYD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S897.  Gene #93: 'IYD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
IYD MUTATED 4 1 1 0
IYD WILD-TYPE 58 35 27 20
'IYD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S898.  Gene #93: 'IYD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
IYD MUTATED 5 1 0
IYD WILD-TYPE 84 34 22
'IYD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S899.  Gene #93: 'IYD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
IYD MUTATED 4 0 2
IYD WILD-TYPE 58 51 29
'IYD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S900.  Gene #93: 'IYD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
IYD MUTATED 5 1 0
IYD WILD-TYPE 70 44 24
'NBPF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S901.  Gene #94: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
NBPF9 MUTATED 2 1 0
NBPF9 WILD-TYPE 64 64 14
'NBPF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S902.  Gene #94: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
NBPF9 MUTATED 0 1 0 2
NBPF9 WILD-TYPE 38 28 45 32
'NBPF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S903.  Gene #94: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
NBPF9 MUTATED 1 1 1
NBPF9 WILD-TYPE 70 42 31
'NBPF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S904.  Gene #94: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
NBPF9 MUTATED 1 1 1
NBPF9 WILD-TYPE 66 62 15
'NBPF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S905.  Gene #94: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
NBPF9 MUTATED 1 1 1 0
NBPF9 WILD-TYPE 61 35 27 20
'NBPF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S906.  Gene #94: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
NBPF9 MUTATED 1 1 1
NBPF9 WILD-TYPE 88 34 21
'NBPF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S907.  Gene #94: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
NBPF9 MUTATED 0 2 1
NBPF9 WILD-TYPE 62 49 30
'NBPF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S908.  Gene #94: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
NBPF9 MUTATED 1 1 1
NBPF9 WILD-TYPE 74 44 23
'PRSS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S909.  Gene #95: 'PRSS3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
PRSS3 MUTATED 2 1 0
PRSS3 WILD-TYPE 64 64 14
'PRSS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S910.  Gene #95: 'PRSS3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
PRSS3 MUTATED 1 1 1 0
PRSS3 WILD-TYPE 37 28 44 34
'PRSS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S911.  Gene #95: 'PRSS3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
PRSS3 MUTATED 1 1 0 1 0
PRSS3 WILD-TYPE 33 15 11 10 13
'PRSS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S912.  Gene #95: 'PRSS3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
PRSS3 MUTATED 0 1 1 0 1 0 0
PRSS3 WILD-TYPE 12 16 20 9 5 14 6
'PRSS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S913.  Gene #95: 'PRSS3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
PRSS3 MUTATED 1 1 1
PRSS3 WILD-TYPE 70 42 31
'PRSS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S914.  Gene #95: 'PRSS3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
PRSS3 MUTATED 2 0 1
PRSS3 WILD-TYPE 65 63 15
'PRSS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S915.  Gene #95: 'PRSS3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
PRSS3 MUTATED 1 1 1 0
PRSS3 WILD-TYPE 61 35 27 20
'PRSS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S916.  Gene #95: 'PRSS3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
PRSS3 MUTATED 1 1 1
PRSS3 WILD-TYPE 88 34 21
'PRSS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S917.  Gene #95: 'PRSS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
PRSS3 MUTATED 1 1 1
PRSS3 WILD-TYPE 61 50 30
'PRSS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S918.  Gene #95: 'PRSS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
PRSS3 MUTATED 0 2 1
PRSS3 WILD-TYPE 75 43 23
'COBL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S919.  Gene #96: 'COBL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
COBL MUTATED 4 2 0
COBL WILD-TYPE 62 63 14
'COBL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S920.  Gene #96: 'COBL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
COBL MUTATED 2 1 1 2
COBL WILD-TYPE 36 28 44 32
'COBL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S921.  Gene #96: 'COBL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
COBL MUTATED 1 1 2 0 2
COBL WILD-TYPE 33 15 9 11 11
'COBL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S922.  Gene #96: 'COBL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
COBL MUTATED 0 1 1 1 0 2 1
COBL WILD-TYPE 12 16 20 8 6 12 5
'COBL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S923.  Gene #96: 'COBL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
COBL MUTATED 4 1 1
COBL WILD-TYPE 67 42 31
'COBL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S924.  Gene #96: 'COBL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
COBL MUTATED 3 2 1
COBL WILD-TYPE 64 61 15
'COBL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S925.  Gene #96: 'COBL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
COBL MUTATED 2 1 2 1
COBL WILD-TYPE 60 35 26 19
'COBL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S926.  Gene #96: 'COBL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
COBL MUTATED 5 0 1
COBL WILD-TYPE 84 35 21
'COBL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S927.  Gene #96: 'COBL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
COBL MUTATED 3 3 0
COBL WILD-TYPE 59 48 31
'COBL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S928.  Gene #96: 'COBL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
COBL MUTATED 3 1 2
COBL WILD-TYPE 72 44 22
'SORT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S929.  Gene #97: 'SORT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
SORT1 MUTATED 4 1 0
SORT1 WILD-TYPE 62 64 14
'SORT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S930.  Gene #97: 'SORT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
SORT1 MUTATED 1 2 0 2
SORT1 WILD-TYPE 37 27 45 32
'SORT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S931.  Gene #97: 'SORT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
SORT1 MUTATED 1 0 1 0 2
SORT1 WILD-TYPE 33 16 10 11 11
'SORT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0627 (Fisher's exact test), Q value = 1

Table S932.  Gene #97: 'SORT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
SORT1 MUTATED 0 1 0 0 0 1 2
SORT1 WILD-TYPE 12 16 21 9 6 13 4
'SORT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S933.  Gene #97: 'SORT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
SORT1 MUTATED 1 3 1
SORT1 WILD-TYPE 70 40 31
'SORT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S934.  Gene #97: 'SORT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
SORT1 MUTATED 3 1 1
SORT1 WILD-TYPE 64 62 15
'SORT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S935.  Gene #97: 'SORT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
SORT1 MUTATED 1 3 1 0
SORT1 WILD-TYPE 61 33 27 20
'SORT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S936.  Gene #97: 'SORT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
SORT1 MUTATED 2 2 1
SORT1 WILD-TYPE 87 33 21
'SORT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S937.  Gene #97: 'SORT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
SORT1 MUTATED 2 1 2
SORT1 WILD-TYPE 60 50 29
'SORT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0167 (Fisher's exact test), Q value = 1

Table S938.  Gene #97: 'SORT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
SORT1 MUTATED 0 4 1
SORT1 WILD-TYPE 75 41 23

Figure S51.  Get High-res Image Gene #97: 'SORT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SSBP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S939.  Gene #98: 'SSBP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
SSBP3 MUTATED 1 2 0
SSBP3 WILD-TYPE 65 63 14
'SSBP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S940.  Gene #98: 'SSBP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
SSBP3 MUTATED 2 0 0 1
SSBP3 WILD-TYPE 36 29 45 33
'SSBP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S941.  Gene #98: 'SSBP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
SSBP3 MUTATED 1 0 2
SSBP3 WILD-TYPE 70 43 30
'SSBP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0946 (Fisher's exact test), Q value = 1

Table S942.  Gene #98: 'SSBP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
SSBP3 MUTATED 0 2 1
SSBP3 WILD-TYPE 67 61 15
'SSBP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0851 (Fisher's exact test), Q value = 1

Table S943.  Gene #98: 'SSBP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
SSBP3 MUTATED 1 0 0 2
SSBP3 WILD-TYPE 61 36 28 18
'SSBP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S944.  Gene #98: 'SSBP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
SSBP3 MUTATED 2 0 1
SSBP3 WILD-TYPE 87 35 21
'SSBP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S945.  Gene #98: 'SSBP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
SSBP3 MUTATED 1 1 1
SSBP3 WILD-TYPE 61 50 30
'SSBP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S946.  Gene #98: 'SSBP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
SSBP3 MUTATED 3 0 0
SSBP3 WILD-TYPE 72 45 24
'GPSM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S947.  Gene #99: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
GPSM2 MUTATED 1 2 0
GPSM2 WILD-TYPE 65 63 14
'GPSM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S948.  Gene #99: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
GPSM2 MUTATED 1 0 1 1
GPSM2 WILD-TYPE 37 29 44 33
'GPSM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S949.  Gene #99: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
GPSM2 MUTATED 1 1 0 0 1
GPSM2 WILD-TYPE 33 15 11 11 12
'GPSM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S950.  Gene #99: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
GPSM2 MUTATED 0 1 1 0 0 1 0
GPSM2 WILD-TYPE 12 16 20 9 6 13 6
'GPSM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S951.  Gene #99: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
GPSM2 MUTATED 3 0 0
GPSM2 WILD-TYPE 68 43 32
'GPSM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S952.  Gene #99: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
GPSM2 MUTATED 2 1 0
GPSM2 WILD-TYPE 65 62 16
'GPSM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S953.  Gene #99: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
GPSM2 MUTATED 3 0 0 0
GPSM2 WILD-TYPE 59 36 28 20
'GPSM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S954.  Gene #99: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
GPSM2 MUTATED 3 0 0
GPSM2 WILD-TYPE 86 35 22
'GPSM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S955.  Gene #99: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
GPSM2 MUTATED 3 0 0
GPSM2 WILD-TYPE 59 51 31
'GPSM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S956.  Gene #99: 'GPSM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
GPSM2 MUTATED 3 0 0
GPSM2 WILD-TYPE 72 45 24
'EEF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S957.  Gene #100: 'EEF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
EEF2 MUTATED 3 2 0
EEF2 WILD-TYPE 63 63 14
'EEF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 1

Table S958.  Gene #100: 'EEF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
EEF2 MUTATED 2 0 1 2
EEF2 WILD-TYPE 36 29 44 32
'EEF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S959.  Gene #100: 'EEF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
EEF2 MUTATED 1 1 1 1 0
EEF2 WILD-TYPE 33 15 10 10 13
'EEF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S960.  Gene #100: 'EEF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
EEF2 MUTATED 0 1 2 0 0 0 1
EEF2 WILD-TYPE 12 16 19 9 6 14 5
'EEF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S961.  Gene #100: 'EEF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
EEF2 MUTATED 2 3 0
EEF2 WILD-TYPE 69 40 32
'EEF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0806 (Fisher's exact test), Q value = 1

Table S962.  Gene #100: 'EEF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
EEF2 MUTATED 5 0 0
EEF2 WILD-TYPE 62 63 16
'EEF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S963.  Gene #100: 'EEF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
EEF2 MUTATED 2 2 0 1
EEF2 WILD-TYPE 60 34 28 19
'EEF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S964.  Gene #100: 'EEF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
EEF2 MUTATED 2 2 1
EEF2 WILD-TYPE 87 33 21
'EEF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S965.  Gene #100: 'EEF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
EEF2 MUTATED 3 0 2
EEF2 WILD-TYPE 59 51 29
'EEF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S966.  Gene #100: 'EEF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
EEF2 MUTATED 1 3 1
EEF2 WILD-TYPE 74 42 23
'ZACN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S967.  Gene #101: 'ZACN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
ZACN MUTATED 2 0 1
ZACN WILD-TYPE 64 65 13
'ZACN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S968.  Gene #101: 'ZACN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
ZACN MUTATED 0 0 1 2
ZACN WILD-TYPE 38 29 44 32
'ZACN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S969.  Gene #101: 'ZACN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
ZACN MUTATED 1 0 1 1 0
ZACN WILD-TYPE 33 16 10 10 13
'ZACN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S970.  Gene #101: 'ZACN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
ZACN MUTATED 0 0 2 1 0 0 0
ZACN WILD-TYPE 12 17 19 8 6 14 6
'ZACN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S971.  Gene #101: 'ZACN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
ZACN MUTATED 1 1 1
ZACN WILD-TYPE 70 42 31
'ZACN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S972.  Gene #101: 'ZACN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
ZACN MUTATED 1 1 1
ZACN WILD-TYPE 66 62 15
'ZACN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S973.  Gene #101: 'ZACN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
ZACN MUTATED 1 1 0 1
ZACN WILD-TYPE 61 35 28 19
'ZACN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S974.  Gene #101: 'ZACN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
ZACN MUTATED 1 1 1
ZACN WILD-TYPE 88 34 21
'ZACN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S975.  Gene #101: 'ZACN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
ZACN MUTATED 1 1 1
ZACN WILD-TYPE 61 50 30
'ZACN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S976.  Gene #101: 'ZACN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
ZACN MUTATED 1 1 1
ZACN WILD-TYPE 74 44 23
'ZMYM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S977.  Gene #102: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
ZMYM2 MUTATED 1 1 1
ZMYM2 WILD-TYPE 65 64 13
'ZMYM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S978.  Gene #102: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
ZMYM2 MUTATED 2 0 1 0
ZMYM2 WILD-TYPE 36 29 44 34
'ZMYM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S979.  Gene #102: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
ZMYM2 MUTATED 1 0 1 0 1
ZMYM2 WILD-TYPE 33 16 10 11 12
'ZMYM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0133 (Fisher's exact test), Q value = 1

Table S980.  Gene #102: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
ZMYM2 MUTATED 0 0 0 0 0 1 2
ZMYM2 WILD-TYPE 12 17 21 9 6 13 4

Figure S52.  Get High-res Image Gene #102: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZMYM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S981.  Gene #102: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
ZMYM2 MUTATED 2 1 0
ZMYM2 WILD-TYPE 69 42 32
'ZMYM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S982.  Gene #102: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
ZMYM2 MUTATED 1 2 0
ZMYM2 WILD-TYPE 66 61 16
'ZMYM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S983.  Gene #102: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
ZMYM2 MUTATED 1 1 1 0
ZMYM2 WILD-TYPE 61 35 27 20
'ZMYM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S984.  Gene #102: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
ZMYM2 MUTATED 3 0 0
ZMYM2 WILD-TYPE 86 35 22
'GSN MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S985.  Gene #103: 'GSN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
GSN MUTATED 2 2 0
GSN WILD-TYPE 64 63 14
'GSN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S986.  Gene #103: 'GSN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
GSN MUTATED 1 1 1 1
GSN WILD-TYPE 37 28 44 33
'GSN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S987.  Gene #103: 'GSN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
GSN MUTATED 0 1 1 0 1
GSN WILD-TYPE 34 15 10 11 12
'GSN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S988.  Gene #103: 'GSN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
GSN MUTATED 0 1 0 0 0 1 1
GSN WILD-TYPE 12 16 21 9 6 13 5
'GSN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S989.  Gene #103: 'GSN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
GSN MUTATED 2 1 1
GSN WILD-TYPE 69 42 31
'GSN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S990.  Gene #103: 'GSN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
GSN MUTATED 2 2 0
GSN WILD-TYPE 65 61 16
'GSN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S991.  Gene #103: 'GSN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
GSN MUTATED 2 2 0 0
GSN WILD-TYPE 60 34 28 20
'GSN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S992.  Gene #103: 'GSN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
GSN MUTATED 3 1 0
GSN WILD-TYPE 86 34 22
'GSN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S993.  Gene #103: 'GSN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
GSN MUTATED 3 0 1
GSN WILD-TYPE 59 51 30
'GSN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S994.  Gene #103: 'GSN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
GSN MUTATED 2 2 0
GSN WILD-TYPE 73 43 24
'TGFBR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S995.  Gene #104: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
TGFBR1 MUTATED 5 3 0
TGFBR1 WILD-TYPE 61 62 14
'TGFBR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S996.  Gene #104: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
TGFBR1 MUTATED 2 2 2 2
TGFBR1 WILD-TYPE 36 27 43 32
'TGFBR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S997.  Gene #104: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
TGFBR1 MUTATED 4 1 1 0 0
TGFBR1 WILD-TYPE 30 15 10 11 13
'TGFBR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S998.  Gene #104: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
TGFBR1 MUTATED 2 1 1 0 0 1 1
TGFBR1 WILD-TYPE 10 16 20 9 6 13 5
'TGFBR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S999.  Gene #104: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
TGFBR1 MUTATED 2 4 2
TGFBR1 WILD-TYPE 69 39 30
'TGFBR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S1000.  Gene #104: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
TGFBR1 MUTATED 5 2 1
TGFBR1 WILD-TYPE 62 61 15
'TGFBR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S1001.  Gene #104: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
TGFBR1 MUTATED 3 3 1 1
TGFBR1 WILD-TYPE 59 33 27 19
'TGFBR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1002.  Gene #104: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
TGFBR1 MUTATED 5 2 1
TGFBR1 WILD-TYPE 84 33 21
'TGFBR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1003.  Gene #104: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
TGFBR1 MUTATED 3 3 2
TGFBR1 WILD-TYPE 59 48 29
'TGFBR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S1004.  Gene #104: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
TGFBR1 MUTATED 4 2 2
TGFBR1 WILD-TYPE 71 43 22
'MLPH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S1005.  Gene #105: 'MLPH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
MLPH MUTATED 1 1 0 1
MLPH WILD-TYPE 37 28 45 33
'MLPH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S1006.  Gene #105: 'MLPH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
MLPH MUTATED 0 2 1
MLPH WILD-TYPE 71 41 31
'MLPH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S1007.  Gene #105: 'MLPH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
MLPH MUTATED 3 0 0
MLPH WILD-TYPE 64 63 16
'MLPH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S1008.  Gene #105: 'MLPH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
MLPH MUTATED 0 2 1 0
MLPH WILD-TYPE 62 34 27 20
'MLPH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S1009.  Gene #105: 'MLPH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
MLPH MUTATED 1 2 0
MLPH WILD-TYPE 88 33 22
'MLPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S1010.  Gene #105: 'MLPH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
MLPH MUTATED 1 2 0
MLPH WILD-TYPE 61 49 31
'MLPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S1011.  Gene #105: 'MLPH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
MLPH MUTATED 0 2 1
MLPH WILD-TYPE 75 43 23
'UBXN4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1012.  Gene #106: 'UBXN4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
UBXN4 MUTATED 2 1 0
UBXN4 WILD-TYPE 64 64 14
'UBXN4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S1013.  Gene #106: 'UBXN4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
UBXN4 MUTATED 1 0 0 2
UBXN4 WILD-TYPE 37 29 45 32
'UBXN4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S1014.  Gene #106: 'UBXN4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
UBXN4 MUTATED 0 1 1 0 1
UBXN4 WILD-TYPE 34 15 10 11 12
'UBXN4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S1015.  Gene #106: 'UBXN4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
UBXN4 MUTATED 0 1 0 0 0 1 1
UBXN4 WILD-TYPE 12 16 21 9 6 13 5
'UBXN4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1016.  Gene #106: 'UBXN4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
UBXN4 MUTATED 2 1 0
UBXN4 WILD-TYPE 69 42 32
'UBXN4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S1017.  Gene #106: 'UBXN4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
UBXN4 MUTATED 1 2 0
UBXN4 WILD-TYPE 66 61 16
'UBXN4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S1018.  Gene #106: 'UBXN4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
UBXN4 MUTATED 1 1 1 0
UBXN4 WILD-TYPE 61 35 27 20
'UBXN4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S1019.  Gene #106: 'UBXN4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
UBXN4 MUTATED 3 0 0
UBXN4 WILD-TYPE 86 35 22
'UBXN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S1020.  Gene #106: 'UBXN4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
UBXN4 MUTATED 2 1 0
UBXN4 WILD-TYPE 60 50 31
'UBXN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S1021.  Gene #106: 'UBXN4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
UBXN4 MUTATED 1 2 0
UBXN4 WILD-TYPE 74 43 24
'KCNE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S1022.  Gene #107: 'KCNE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
KCNE1 MUTATED 3 1 0
KCNE1 WILD-TYPE 63 64 14
'KCNE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S1023.  Gene #107: 'KCNE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
KCNE1 MUTATED 1 0 1 2
KCNE1 WILD-TYPE 37 29 44 32
'KCNE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S1024.  Gene #107: 'KCNE1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
KCNE1 MUTATED 1 2 1 0 0
KCNE1 WILD-TYPE 33 14 10 11 13
'KCNE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0234 (Fisher's exact test), Q value = 1

Table S1025.  Gene #107: 'KCNE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
KCNE1 MUTATED 0 2 0 0 0 0 2
KCNE1 WILD-TYPE 12 15 21 9 6 14 4

Figure S53.  Get High-res Image Gene #107: 'KCNE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KCNE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S1026.  Gene #107: 'KCNE1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
KCNE1 MUTATED 3 1 0
KCNE1 WILD-TYPE 68 42 32
'KCNE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S1027.  Gene #107: 'KCNE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
KCNE1 MUTATED 1 3 0
KCNE1 WILD-TYPE 66 60 16
'KCNE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S1028.  Gene #107: 'KCNE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
KCNE1 MUTATED 1 1 2 0
KCNE1 WILD-TYPE 61 35 26 20
'KCNE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S1029.  Gene #107: 'KCNE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
KCNE1 MUTATED 4 0 0
KCNE1 WILD-TYPE 85 35 22
'KCNE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S1030.  Gene #107: 'KCNE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
KCNE1 MUTATED 3 1 0
KCNE1 WILD-TYPE 59 50 31
'KCNE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1031.  Gene #107: 'KCNE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
KCNE1 MUTATED 3 1 0
KCNE1 WILD-TYPE 72 44 24
'RTTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S1032.  Gene #108: 'RTTN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
RTTN MUTATED 4 1 0
RTTN WILD-TYPE 62 64 14
'RTTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 1

Table S1033.  Gene #108: 'RTTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
RTTN MUTATED 2 0 1 2
RTTN WILD-TYPE 36 29 44 32
'RTTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S1034.  Gene #108: 'RTTN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
RTTN MUTATED 1 2 1 0 0
RTTN WILD-TYPE 33 14 10 11 13
'RTTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S1035.  Gene #108: 'RTTN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
RTTN MUTATED 0 1 1 0 0 1 1
RTTN WILD-TYPE 12 16 20 9 6 13 5
'RTTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S1036.  Gene #108: 'RTTN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
RTTN MUTATED 3 2 0
RTTN WILD-TYPE 68 41 32
'RTTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S1037.  Gene #108: 'RTTN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
RTTN MUTATED 2 3 0
RTTN WILD-TYPE 65 60 16
'RTTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S1038.  Gene #108: 'RTTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
RTTN MUTATED 2 1 2 0
RTTN WILD-TYPE 60 35 26 20
'RTTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S1039.  Gene #108: 'RTTN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
RTTN MUTATED 5 0 0
RTTN WILD-TYPE 84 35 22
'RTTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S1040.  Gene #108: 'RTTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
RTTN MUTATED 2 1 2
RTTN WILD-TYPE 60 50 29
'RTTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S1041.  Gene #108: 'RTTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
RTTN MUTATED 4 1 0
RTTN WILD-TYPE 71 44 24
'FAM8A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1042.  Gene #109: 'FAM8A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
FAM8A1 MUTATED 2 2 0
FAM8A1 WILD-TYPE 64 63 14
'FAM8A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S1043.  Gene #109: 'FAM8A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
FAM8A1 MUTATED 0 2 1 1
FAM8A1 WILD-TYPE 38 27 44 33
'FAM8A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S1044.  Gene #109: 'FAM8A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
FAM8A1 MUTATED 0 2 0 1 0
FAM8A1 WILD-TYPE 34 14 11 10 13
'FAM8A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S1045.  Gene #109: 'FAM8A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
FAM8A1 MUTATED 0 2 1 0 0 0 0
FAM8A1 WILD-TYPE 12 15 20 9 6 14 6
'FAM8A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S1046.  Gene #109: 'FAM8A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
FAM8A1 MUTATED 2 2 0
FAM8A1 WILD-TYPE 69 41 32
'FAM8A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1047.  Gene #109: 'FAM8A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
FAM8A1 MUTATED 2 2 0
FAM8A1 WILD-TYPE 65 61 16
'FAM8A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S1048.  Gene #109: 'FAM8A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
FAM8A1 MUTATED 2 1 0 1
FAM8A1 WILD-TYPE 60 35 28 19
'FAM8A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S1049.  Gene #109: 'FAM8A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
FAM8A1 MUTATED 2 2 0
FAM8A1 WILD-TYPE 87 33 22
'FAM8A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1050.  Gene #109: 'FAM8A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
FAM8A1 MUTATED 2 1 1
FAM8A1 WILD-TYPE 60 50 30
'FAM8A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S1051.  Gene #109: 'FAM8A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
FAM8A1 MUTATED 2 2 0
FAM8A1 WILD-TYPE 73 43 24
'ACTRT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1052.  Gene #110: 'ACTRT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
ACTRT2 MUTATED 2 1 0
ACTRT2 WILD-TYPE 64 64 14
'ACTRT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S1053.  Gene #110: 'ACTRT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
ACTRT2 MUTATED 1 1 0 1
ACTRT2 WILD-TYPE 37 28 45 33
'ACTRT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S1054.  Gene #110: 'ACTRT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
ACTRT2 MUTATED 1 1 1 0 0
ACTRT2 WILD-TYPE 33 15 10 11 13
'ACTRT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S1055.  Gene #110: 'ACTRT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
ACTRT2 MUTATED 0 1 1 1 0 0 0
ACTRT2 WILD-TYPE 12 16 20 8 6 14 6
'ACTRT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S1056.  Gene #110: 'ACTRT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
ACTRT2 MUTATED 2 0 1
ACTRT2 WILD-TYPE 69 43 31
'ACTRT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S1057.  Gene #110: 'ACTRT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
ACTRT2 MUTATED 1 1 1
ACTRT2 WILD-TYPE 66 62 15
'ACTRT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S1058.  Gene #110: 'ACTRT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
ACTRT2 MUTATED 1 0 1 1
ACTRT2 WILD-TYPE 61 36 27 19
'ACTRT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S1059.  Gene #110: 'ACTRT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
ACTRT2 MUTATED 2 0 1
ACTRT2 WILD-TYPE 87 35 21
'ACTRT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S1060.  Gene #110: 'ACTRT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
ACTRT2 MUTATED 1 2 0
ACTRT2 WILD-TYPE 61 49 31
'ACTRT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S1061.  Gene #110: 'ACTRT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
ACTRT2 MUTATED 2 0 1
ACTRT2 WILD-TYPE 73 45 23
'DNAH7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S1062.  Gene #111: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
DNAH7 MUTATED 5 1 1
DNAH7 WILD-TYPE 61 64 13
'DNAH7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S1063.  Gene #111: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
DNAH7 MUTATED 1 1 2 3
DNAH7 WILD-TYPE 37 28 43 31
'DNAH7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0368 (Fisher's exact test), Q value = 1

Table S1064.  Gene #111: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
DNAH7 MUTATED 0 3 1 1 0
DNAH7 WILD-TYPE 34 13 10 10 13

Figure S54.  Get High-res Image Gene #111: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DNAH7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S1065.  Gene #111: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
DNAH7 MUTATED 0 3 1 0 0 0 1
DNAH7 WILD-TYPE 12 14 20 9 6 14 5
'DNAH7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S1066.  Gene #111: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
DNAH7 MUTATED 5 1 1
DNAH7 WILD-TYPE 66 42 31
'DNAH7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S1067.  Gene #111: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
DNAH7 MUTATED 2 4 1
DNAH7 WILD-TYPE 65 59 15
'DNAH7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S1068.  Gene #111: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
DNAH7 MUTATED 2 1 3 1
DNAH7 WILD-TYPE 60 35 25 19
'DNAH7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S1069.  Gene #111: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
DNAH7 MUTATED 6 0 1
DNAH7 WILD-TYPE 83 35 21
'DNAH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S1070.  Gene #111: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
DNAH7 MUTATED 4 2 1
DNAH7 WILD-TYPE 58 49 30
'DNAH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S1071.  Gene #111: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
DNAH7 MUTATED 5 1 1
DNAH7 WILD-TYPE 70 44 23
'OR1N2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S1072.  Gene #112: 'OR1N2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
OR1N2 MUTATED 4 1 0
OR1N2 WILD-TYPE 62 64 14
'OR1N2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S1073.  Gene #112: 'OR1N2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
OR1N2 MUTATED 2 0 1 2
OR1N2 WILD-TYPE 36 29 44 32
'OR1N2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 1

Table S1074.  Gene #112: 'OR1N2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
OR1N2 MUTATED 2 0 1 2 0
OR1N2 WILD-TYPE 32 16 10 9 13
'OR1N2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S1075.  Gene #112: 'OR1N2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
OR1N2 MUTATED 1 0 2 0 0 1 1
OR1N2 WILD-TYPE 11 17 19 9 6 13 5
'OR1N2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S1076.  Gene #112: 'OR1N2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
OR1N2 MUTATED 2 1 2
OR1N2 WILD-TYPE 69 42 30
'OR1N2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S1077.  Gene #112: 'OR1N2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
OR1N2 MUTATED 1 2 2
OR1N2 WILD-TYPE 66 61 14
'OR1N2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S1078.  Gene #112: 'OR1N2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
OR1N2 MUTATED 1 1 2 1
OR1N2 WILD-TYPE 61 35 26 19
'OR1N2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S1079.  Gene #112: 'OR1N2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
OR1N2 MUTATED 3 0 2
OR1N2 WILD-TYPE 86 35 20
'OR1N2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S1080.  Gene #112: 'OR1N2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
OR1N2 MUTATED 2 3 0
OR1N2 WILD-TYPE 60 48 31
'OR1N2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S1081.  Gene #112: 'OR1N2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
OR1N2 MUTATED 2 1 2
OR1N2 WILD-TYPE 73 44 22
'BRD8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S1082.  Gene #113: 'BRD8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
BRD8 MUTATED 3 0 0
BRD8 WILD-TYPE 63 65 14
'BRD8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S1083.  Gene #113: 'BRD8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
BRD8 MUTATED 2 0 0 1
BRD8 WILD-TYPE 36 29 45 33
'BRD8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1084.  Gene #113: 'BRD8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
BRD8 MUTATED 2 1 0
BRD8 WILD-TYPE 69 42 32
'BRD8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1085.  Gene #113: 'BRD8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
BRD8 MUTATED 2 1 0
BRD8 WILD-TYPE 65 62 16
'BRD8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S1086.  Gene #113: 'BRD8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
BRD8 MUTATED 0 1 2 0
BRD8 WILD-TYPE 62 35 26 20
'BRD8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S1087.  Gene #113: 'BRD8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
BRD8 MUTATED 3 0 0
BRD8 WILD-TYPE 86 35 22
'BRD8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S1088.  Gene #113: 'BRD8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
BRD8 MUTATED 1 2 0
BRD8 WILD-TYPE 61 49 31
'BRD8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S1089.  Gene #113: 'BRD8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
BRD8 MUTATED 1 2 0
BRD8 WILD-TYPE 74 43 24
'MIPEP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0833 (Fisher's exact test), Q value = 1

Table S1090.  Gene #114: 'MIPEP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
MIPEP MUTATED 0 2 1
MIPEP WILD-TYPE 66 63 13
'MIPEP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1091.  Gene #114: 'MIPEP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
MIPEP MUTATED 1 0 1 1
MIPEP WILD-TYPE 37 29 44 33
'MIPEP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S1092.  Gene #114: 'MIPEP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
MIPEP MUTATED 1 0 0 0 2
MIPEP WILD-TYPE 33 16 11 11 11
'MIPEP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0768 (Fisher's exact test), Q value = 1

Table S1093.  Gene #114: 'MIPEP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
MIPEP MUTATED 0 0 0 0 0 2 1
MIPEP WILD-TYPE 12 17 21 9 6 12 5
'MIPEP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S1094.  Gene #114: 'MIPEP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
MIPEP MUTATED 3 0 0
MIPEP WILD-TYPE 68 43 32
'MIPEP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S1095.  Gene #114: 'MIPEP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
MIPEP MUTATED 0 3 0
MIPEP WILD-TYPE 67 60 16
'MIPEP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S1096.  Gene #114: 'MIPEP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
MIPEP MUTATED 2 0 1 0
MIPEP WILD-TYPE 60 36 27 20
'MIPEP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S1097.  Gene #114: 'MIPEP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
MIPEP MUTATED 3 0 0
MIPEP WILD-TYPE 86 35 22
'SIGLEC14 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1098.  Gene #115: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
SIGLEC14 MUTATED 2 1 0
SIGLEC14 WILD-TYPE 64 64 14
'SIGLEC14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S1099.  Gene #115: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
SIGLEC14 MUTATED 1 1 1 0
SIGLEC14 WILD-TYPE 37 28 44 34
'SIGLEC14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S1100.  Gene #115: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
SIGLEC14 MUTATED 1 1 1
SIGLEC14 WILD-TYPE 70 42 31
'SIGLEC14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1101.  Gene #115: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
SIGLEC14 MUTATED 2 1 0
SIGLEC14 WILD-TYPE 65 62 16
'SIGLEC14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S1102.  Gene #115: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
SIGLEC14 MUTATED 2 0 1 0
SIGLEC14 WILD-TYPE 60 36 27 20
'SIGLEC14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1103.  Gene #115: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
SIGLEC14 MUTATED 2 1 0
SIGLEC14 WILD-TYPE 87 34 22
'SIGLEC14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S1104.  Gene #115: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
SIGLEC14 MUTATED 2 1 0
SIGLEC14 WILD-TYPE 60 50 31
'SIGLEC14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1105.  Gene #115: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
SIGLEC14 MUTATED 2 1 0
SIGLEC14 WILD-TYPE 73 44 24
'ARID1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0796 (Fisher's exact test), Q value = 1

Table S1106.  Gene #116: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
ARID1A MUTATED 4 1 2
ARID1A WILD-TYPE 62 64 12
'ARID1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S1107.  Gene #116: 'ARID1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
ARID1A MUTATED 3 0 1 3
ARID1A WILD-TYPE 35 29 44 31
'ARID1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S1108.  Gene #116: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
ARID1A MUTATED 1 0 1 0 1
ARID1A WILD-TYPE 33 16 10 11 12
'ARID1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S1109.  Gene #116: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
ARID1A MUTATED 1 1 0 0 0 0 1
ARID1A WILD-TYPE 11 16 21 9 6 14 5
'ARID1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S1110.  Gene #116: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
ARID1A MUTATED 3 2 2
ARID1A WILD-TYPE 68 41 30
'ARID1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S1111.  Gene #116: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
ARID1A MUTATED 2 4 1
ARID1A WILD-TYPE 65 59 15
'ARID1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S1112.  Gene #116: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
ARID1A MUTATED 2 2 3 0
ARID1A WILD-TYPE 60 34 25 20
'ARID1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S1113.  Gene #116: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
ARID1A MUTATED 4 1 2
ARID1A WILD-TYPE 85 34 20
'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S1114.  Gene #116: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
ARID1A MUTATED 2 3 2
ARID1A WILD-TYPE 60 48 29
'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S1115.  Gene #116: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
ARID1A MUTATED 3 2 2
ARID1A WILD-TYPE 72 43 22
'POM121 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1116.  Gene #117: 'POM121 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
POM121 MUTATED 3 2 0
POM121 WILD-TYPE 63 63 14
'POM121 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1117.  Gene #117: 'POM121 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
POM121 MUTATED 1 1 2 1
POM121 WILD-TYPE 37 28 43 33
'POM121 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S1118.  Gene #117: 'POM121 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
POM121 MUTATED 2 1 1 0 0
POM121 WILD-TYPE 32 15 10 11 13
'POM121 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S1119.  Gene #117: 'POM121 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
POM121 MUTATED 0 1 2 0 0 0 1
POM121 WILD-TYPE 12 16 19 9 6 14 5
'POM121 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S1120.  Gene #117: 'POM121 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
POM121 MUTATED 2 2 1
POM121 WILD-TYPE 69 41 31
'POM121 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S1121.  Gene #117: 'POM121 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
POM121 MUTATED 3 1 1
POM121 WILD-TYPE 64 62 15
'POM121 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S1122.  Gene #117: 'POM121 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
POM121 MUTATED 1 3 0 1
POM121 WILD-TYPE 61 33 28 19
'POM121 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1123.  Gene #117: 'POM121 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
POM121 MUTATED 3 1 1
POM121 WILD-TYPE 86 34 21
'POM121 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S1124.  Gene #117: 'POM121 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
POM121 MUTATED 3 1 1
POM121 WILD-TYPE 59 50 30
'POM121 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S1125.  Gene #117: 'POM121 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
POM121 MUTATED 1 3 1
POM121 WILD-TYPE 74 42 23
'LCP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S1126.  Gene #118: 'LCP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
LCP2 MUTATED 3 0 0
LCP2 WILD-TYPE 63 65 14
'LCP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S1127.  Gene #118: 'LCP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
LCP2 MUTATED 1 1 0 1
LCP2 WILD-TYPE 37 28 45 33
'LCP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S1128.  Gene #118: 'LCP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
LCP2 MUTATED 1 2 0
LCP2 WILD-TYPE 70 41 32
'LCP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1129.  Gene #118: 'LCP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
LCP2 MUTATED 2 1 0
LCP2 WILD-TYPE 65 62 16
'LCP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S1130.  Gene #118: 'LCP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
LCP2 MUTATED 0 2 1 0
LCP2 WILD-TYPE 62 34 27 20
'LCP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1131.  Gene #118: 'LCP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
LCP2 MUTATED 2 1 0
LCP2 WILD-TYPE 87 34 22
'LCP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S1132.  Gene #118: 'LCP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
LCP2 MUTATED 1 2 0
LCP2 WILD-TYPE 61 49 31
'LCP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S1133.  Gene #118: 'LCP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
LCP2 MUTATED 1 1 1
LCP2 WILD-TYPE 74 44 23
'L1CAM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S1134.  Gene #119: 'L1CAM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
L1CAM MUTATED 4 2 0
L1CAM WILD-TYPE 62 63 14
'L1CAM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S1135.  Gene #119: 'L1CAM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
L1CAM MUTATED 1 1 2 2
L1CAM WILD-TYPE 37 28 43 32
'L1CAM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 1

Table S1136.  Gene #119: 'L1CAM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
L1CAM MUTATED 0 2 0 2 0
L1CAM WILD-TYPE 34 14 11 9 13

Figure S55.  Get High-res Image Gene #119: 'L1CAM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'L1CAM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S1137.  Gene #119: 'L1CAM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
L1CAM MUTATED 0 1 3 0 0 0 0
L1CAM WILD-TYPE 12 16 18 9 6 14 6
'L1CAM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S1138.  Gene #119: 'L1CAM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
L1CAM MUTATED 4 2 0
L1CAM WILD-TYPE 67 41 32
'L1CAM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S1139.  Gene #119: 'L1CAM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
L1CAM MUTATED 2 4 0
L1CAM WILD-TYPE 65 59 16
'L1CAM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S1140.  Gene #119: 'L1CAM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
L1CAM MUTATED 3 2 1 0
L1CAM WILD-TYPE 59 34 27 20
'L1CAM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S1141.  Gene #119: 'L1CAM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
L1CAM MUTATED 4 2 0
L1CAM WILD-TYPE 85 33 22
'L1CAM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1142.  Gene #119: 'L1CAM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
L1CAM MUTATED 3 2 1
L1CAM WILD-TYPE 59 49 30
'L1CAM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S1143.  Gene #119: 'L1CAM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
L1CAM MUTATED 4 2 0
L1CAM WILD-TYPE 71 43 24
'ABCG5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S1144.  Gene #120: 'ABCG5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
ABCG5 MUTATED 1 1 1
ABCG5 WILD-TYPE 65 64 13
'ABCG5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S1145.  Gene #120: 'ABCG5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
ABCG5 MUTATED 2 0 1 0
ABCG5 WILD-TYPE 36 29 44 34
'ABCG5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S1146.  Gene #120: 'ABCG5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
ABCG5 MUTATED 0 1 1 0 1
ABCG5 WILD-TYPE 34 15 10 11 12
'ABCG5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S1147.  Gene #120: 'ABCG5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
ABCG5 MUTATED 0 1 0 0 0 1 1
ABCG5 WILD-TYPE 12 16 21 9 6 13 5
'ABCG5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1148.  Gene #120: 'ABCG5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
ABCG5 MUTATED 2 1 0
ABCG5 WILD-TYPE 69 42 32
'ABCG5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S1149.  Gene #120: 'ABCG5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
ABCG5 MUTATED 1 2 0
ABCG5 WILD-TYPE 66 61 16
'ABCG5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S1150.  Gene #120: 'ABCG5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
ABCG5 MUTATED 1 1 1 0
ABCG5 WILD-TYPE 61 35 27 20
'ABCG5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S1151.  Gene #120: 'ABCG5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
ABCG5 MUTATED 3 0 0
ABCG5 WILD-TYPE 86 35 22
'KRT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1152.  Gene #121: 'KRT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
KRT2 MUTATED 3 2 0
KRT2 WILD-TYPE 63 63 14
'KRT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1153.  Gene #121: 'KRT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
KRT2 MUTATED 1 1 2 1
KRT2 WILD-TYPE 37 28 43 33
'KRT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S1154.  Gene #121: 'KRT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
KRT2 MUTATED 2 2 1
KRT2 WILD-TYPE 69 41 31
'KRT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S1155.  Gene #121: 'KRT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
KRT2 MUTATED 4 1 0
KRT2 WILD-TYPE 63 62 16
'KRT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S1156.  Gene #121: 'KRT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
KRT2 MUTATED 3 2 0 0
KRT2 WILD-TYPE 59 34 28 20
'KRT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S1157.  Gene #121: 'KRT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
KRT2 MUTATED 3 2 0
KRT2 WILD-TYPE 86 33 22
'KRT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S1158.  Gene #121: 'KRT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
KRT2 MUTATED 4 1 0
KRT2 WILD-TYPE 58 50 31
'KRT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S1159.  Gene #121: 'KRT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
KRT2 MUTATED 2 3 0
KRT2 WILD-TYPE 73 42 24
'ZNF780A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S1160.  Gene #122: 'ZNF780A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
ZNF780A MUTATED 2 2 1
ZNF780A WILD-TYPE 64 63 13
'ZNF780A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S1161.  Gene #122: 'ZNF780A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
ZNF780A MUTATED 2 0 2 1
ZNF780A WILD-TYPE 36 29 43 33
'ZNF780A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S1162.  Gene #122: 'ZNF780A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
ZNF780A MUTATED 1 2 0 1 0
ZNF780A WILD-TYPE 33 14 11 10 13
'ZNF780A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S1163.  Gene #122: 'ZNF780A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
ZNF780A MUTATED 0 1 1 0 0 2 0
ZNF780A WILD-TYPE 12 16 20 9 6 12 6
'ZNF780A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1164.  Gene #122: 'ZNF780A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
ZNF780A MUTATED 3 1 1
ZNF780A WILD-TYPE 68 42 31
'ZNF780A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S1165.  Gene #122: 'ZNF780A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
ZNF780A MUTATED 2 3 0
ZNF780A WILD-TYPE 65 60 16
'ZNF780A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S1166.  Gene #122: 'ZNF780A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
ZNF780A MUTATED 4 1 0 0
ZNF780A WILD-TYPE 58 35 28 20
'ZNF780A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S1167.  Gene #122: 'ZNF780A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
ZNF780A MUTATED 4 1 0
ZNF780A WILD-TYPE 85 34 22
'ZNF780A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S1168.  Gene #122: 'ZNF780A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
ZNF780A MUTATED 2 1 2
ZNF780A WILD-TYPE 60 50 29
'ZNF780A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S1169.  Gene #122: 'ZNF780A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
ZNF780A MUTATED 4 1 0
ZNF780A WILD-TYPE 71 44 24
'DDX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0566 (Fisher's exact test), Q value = 1

Table S1170.  Gene #123: 'DDX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
DDX4 MUTATED 5 0 0
DDX4 WILD-TYPE 61 65 14
'DDX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0707 (Fisher's exact test), Q value = 1

Table S1171.  Gene #123: 'DDX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
DDX4 MUTATED 2 0 0 3
DDX4 WILD-TYPE 36 29 45 31
'DDX4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S1172.  Gene #123: 'DDX4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
DDX4 MUTATED 0 2 1 0 0
DDX4 WILD-TYPE 34 14 10 11 13
'DDX4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S1173.  Gene #123: 'DDX4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
DDX4 MUTATED 0 2 0 0 0 0 1
DDX4 WILD-TYPE 12 15 21 9 6 14 5
'DDX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S1174.  Gene #123: 'DDX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
DDX4 MUTATED 4 1 0
DDX4 WILD-TYPE 67 42 32
'DDX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S1175.  Gene #123: 'DDX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
DDX4 MUTATED 2 3 0
DDX4 WILD-TYPE 65 60 16
'DDX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00763 (Fisher's exact test), Q value = 1

Table S1176.  Gene #123: 'DDX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
DDX4 MUTATED 0 1 4 0
DDX4 WILD-TYPE 62 35 24 20

Figure S56.  Get High-res Image Gene #123: 'DDX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DDX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S1177.  Gene #123: 'DDX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
DDX4 MUTATED 5 0 0
DDX4 WILD-TYPE 84 35 22
'DDX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1178.  Gene #123: 'DDX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
DDX4 MUTATED 2 2 1
DDX4 WILD-TYPE 60 49 30
'DDX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S1179.  Gene #123: 'DDX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
DDX4 MUTATED 3 2 0
DDX4 WILD-TYPE 72 43 24
'BTN2A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S1180.  Gene #124: 'BTN2A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
BTN2A1 MUTATED 1 2 0
BTN2A1 WILD-TYPE 65 63 14
'BTN2A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S1181.  Gene #124: 'BTN2A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
BTN2A1 MUTATED 2 0 1 0
BTN2A1 WILD-TYPE 36 29 44 34
'BTN2A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S1182.  Gene #124: 'BTN2A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
BTN2A1 MUTATED 1 0 2 0 0
BTN2A1 WILD-TYPE 33 16 9 11 13
'BTN2A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S1183.  Gene #124: 'BTN2A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
BTN2A1 MUTATED 1 0 0 1 0 0 1
BTN2A1 WILD-TYPE 11 17 21 8 6 14 5
'BTN2A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S1184.  Gene #124: 'BTN2A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
BTN2A1 MUTATED 0 2 1
BTN2A1 WILD-TYPE 71 41 31
'BTN2A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1185.  Gene #124: 'BTN2A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
BTN2A1 MUTATED 2 1 0
BTN2A1 WILD-TYPE 65 62 16
'BTN2A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S1186.  Gene #124: 'BTN2A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
BTN2A1 MUTATED 1 1 0 1
BTN2A1 WILD-TYPE 61 35 28 19
'BTN2A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S1187.  Gene #124: 'BTN2A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
BTN2A1 MUTATED 2 0 1
BTN2A1 WILD-TYPE 87 35 21
'BTN2A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1188.  Gene #124: 'BTN2A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
BTN2A1 MUTATED 1 1 1
BTN2A1 WILD-TYPE 61 50 30
'BTN2A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S1189.  Gene #124: 'BTN2A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
BTN2A1 MUTATED 0 2 1
BTN2A1 WILD-TYPE 75 43 23
'TDRD5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1190.  Gene #125: 'TDRD5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
TDRD5 MUTATED 2 2 0
TDRD5 WILD-TYPE 64 63 14
'TDRD5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S1191.  Gene #125: 'TDRD5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
TDRD5 MUTATED 2 0 2 0
TDRD5 WILD-TYPE 36 29 43 34
'TDRD5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S1192.  Gene #125: 'TDRD5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
TDRD5 MUTATED 0 1 1 1 0
TDRD5 WILD-TYPE 34 15 10 10 13
'TDRD5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1193.  Gene #125: 'TDRD5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
TDRD5 MUTATED 0 1 1 0 0 0 1
TDRD5 WILD-TYPE 12 16 20 9 6 14 5
'TDRD5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S1194.  Gene #125: 'TDRD5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
TDRD5 MUTATED 3 1 0
TDRD5 WILD-TYPE 68 42 32
'TDRD5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1195.  Gene #125: 'TDRD5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
TDRD5 MUTATED 2 2 0
TDRD5 WILD-TYPE 65 61 16
'TDRD5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1196.  Gene #125: 'TDRD5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
TDRD5 MUTATED 2 1 1 0
TDRD5 WILD-TYPE 60 35 27 20
'TDRD5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S1197.  Gene #125: 'TDRD5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
TDRD5 MUTATED 4 0 0
TDRD5 WILD-TYPE 85 35 22
'TDRD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S1198.  Gene #125: 'TDRD5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
TDRD5 MUTATED 3 1 0
TDRD5 WILD-TYPE 59 50 31
'TDRD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S1199.  Gene #125: 'TDRD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
TDRD5 MUTATED 2 2 0
TDRD5 WILD-TYPE 73 43 24
'OR2A14 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1200.  Gene #126: 'OR2A14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
OR2A14 MUTATED 2 2 0
OR2A14 WILD-TYPE 64 63 14
'OR2A14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S1201.  Gene #126: 'OR2A14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
OR2A14 MUTATED 2 0 1 1
OR2A14 WILD-TYPE 36 29 44 33
'OR2A14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S1202.  Gene #126: 'OR2A14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
OR2A14 MUTATED 4 0 0
OR2A14 WILD-TYPE 67 43 32
'OR2A14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S1203.  Gene #126: 'OR2A14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
OR2A14 MUTATED 1 3 0
OR2A14 WILD-TYPE 66 60 16
'OR2A14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S1204.  Gene #126: 'OR2A14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
OR2A14 MUTATED 2 0 2 0
OR2A14 WILD-TYPE 60 36 26 20
'OR2A14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S1205.  Gene #126: 'OR2A14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
OR2A14 MUTATED 4 0 0
OR2A14 WILD-TYPE 85 35 22
'OR2A14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S1206.  Gene #126: 'OR2A14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
OR2A14 MUTATED 3 1 0
OR2A14 WILD-TYPE 59 50 31
'OR2A14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1207.  Gene #126: 'OR2A14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
OR2A14 MUTATED 3 1 0
OR2A14 WILD-TYPE 72 44 24
'PBRM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S1208.  Gene #127: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
PBRM1 MUTATED 3 1 1
PBRM1 WILD-TYPE 63 64 13
'PBRM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 1

Table S1209.  Gene #127: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
PBRM1 MUTATED 2 0 1 2
PBRM1 WILD-TYPE 36 29 44 32
'PBRM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1210.  Gene #127: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
PBRM1 MUTATED 3 1 1
PBRM1 WILD-TYPE 68 42 31
'PBRM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S1211.  Gene #127: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
PBRM1 MUTATED 1 3 1
PBRM1 WILD-TYPE 66 60 15
'PBRM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S1212.  Gene #127: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
PBRM1 MUTATED 2 1 2 0
PBRM1 WILD-TYPE 60 35 26 20
'PBRM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S1213.  Gene #127: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
PBRM1 MUTATED 4 0 1
PBRM1 WILD-TYPE 85 35 21
'PBRM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S1214.  Gene #127: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
PBRM1 MUTATED 3 1 1
PBRM1 WILD-TYPE 59 50 30
'PBRM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1215.  Gene #127: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
PBRM1 MUTATED 3 1 1
PBRM1 WILD-TYPE 72 44 23
'SEPT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S1216.  Gene #128: 'SEPT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
SEPT2 MUTATED 3 0 0
SEPT2 WILD-TYPE 63 65 14
'SEPT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S1217.  Gene #128: 'SEPT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
SEPT2 MUTATED 2 1 0 0
SEPT2 WILD-TYPE 36 28 45 34
'SEPT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S1218.  Gene #128: 'SEPT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
SEPT2 MUTATED 1 2 0
SEPT2 WILD-TYPE 70 41 32
'SEPT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S1219.  Gene #128: 'SEPT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
SEPT2 MUTATED 3 0 0
SEPT2 WILD-TYPE 64 63 16
'SEPT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S1220.  Gene #128: 'SEPT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
SEPT2 MUTATED 0 2 1 0
SEPT2 WILD-TYPE 62 34 27 20
'SEPT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1221.  Gene #128: 'SEPT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
SEPT2 MUTATED 2 1 0
SEPT2 WILD-TYPE 87 34 22
'SEPT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S1222.  Gene #128: 'SEPT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
SEPT2 MUTATED 1 2 0
SEPT2 WILD-TYPE 61 49 31
'SEPT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0584 (Fisher's exact test), Q value = 1

Table S1223.  Gene #128: 'SEPT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
SEPT2 MUTATED 0 3 0
SEPT2 WILD-TYPE 75 42 24
'WDHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S1224.  Gene #129: 'WDHD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
WDHD1 MUTATED 1 1 1
WDHD1 WILD-TYPE 65 64 13
'WDHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S1225.  Gene #129: 'WDHD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
WDHD1 MUTATED 2 0 1 0
WDHD1 WILD-TYPE 36 29 44 34
'WDHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1226.  Gene #129: 'WDHD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
WDHD1 MUTATED 2 1 0
WDHD1 WILD-TYPE 69 42 32
'WDHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S1227.  Gene #129: 'WDHD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
WDHD1 MUTATED 1 2 0
WDHD1 WILD-TYPE 66 61 16
'WDHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S1228.  Gene #129: 'WDHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
WDHD1 MUTATED 1 1 1 0
WDHD1 WILD-TYPE 61 35 27 20
'WDHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S1229.  Gene #129: 'WDHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
WDHD1 MUTATED 3 0 0
WDHD1 WILD-TYPE 86 35 22
'ANKRD49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S1230.  Gene #130: 'ANKRD49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
ANKRD49 MUTATED 1 1 1
ANKRD49 WILD-TYPE 65 64 13
'ANKRD49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S1231.  Gene #130: 'ANKRD49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
ANKRD49 MUTATED 2 0 0 1
ANKRD49 WILD-TYPE 36 29 45 33
'ANKRD49 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0571 (Fisher's exact test), Q value = 1

Table S1232.  Gene #130: 'ANKRD49 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
ANKRD49 MUTATED 0 0 1 0 2
ANKRD49 WILD-TYPE 34 16 10 11 11
'ANKRD49 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0782 (Fisher's exact test), Q value = 1

Table S1233.  Gene #130: 'ANKRD49 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
ANKRD49 MUTATED 0 0 0 0 0 2 1
ANKRD49 WILD-TYPE 12 17 21 9 6 12 5
'ANKRD49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1234.  Gene #130: 'ANKRD49 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
ANKRD49 MUTATED 2 1 0
ANKRD49 WILD-TYPE 69 42 32
'ANKRD49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S1235.  Gene #130: 'ANKRD49 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
ANKRD49 MUTATED 1 2 0
ANKRD49 WILD-TYPE 66 61 16
'ANKRD49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S1236.  Gene #130: 'ANKRD49 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
ANKRD49 MUTATED 1 1 1 0
ANKRD49 WILD-TYPE 61 35 27 20
'ANKRD49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S1237.  Gene #130: 'ANKRD49 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
ANKRD49 MUTATED 3 0 0
ANKRD49 WILD-TYPE 86 35 22
'PAPSS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1238.  Gene #131: 'PAPSS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
PAPSS2 MUTATED 2 2 0
PAPSS2 WILD-TYPE 64 63 14
'PAPSS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S1239.  Gene #131: 'PAPSS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
PAPSS2 MUTATED 1 0 1 2
PAPSS2 WILD-TYPE 37 29 44 32
'PAPSS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 1

Table S1240.  Gene #131: 'PAPSS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
PAPSS2 MUTATED 0 0 2 0 2
PAPSS2 WILD-TYPE 34 16 9 11 11

Figure S57.  Get High-res Image Gene #131: 'PAPSS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PAPSS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.089 (Fisher's exact test), Q value = 1

Table S1241.  Gene #131: 'PAPSS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
PAPSS2 MUTATED 0 0 0 1 1 1 1
PAPSS2 WILD-TYPE 12 17 21 8 5 13 5
'PAPSS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S1242.  Gene #131: 'PAPSS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
PAPSS2 MUTATED 2 2 0
PAPSS2 WILD-TYPE 69 41 32
'PAPSS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1243.  Gene #131: 'PAPSS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
PAPSS2 MUTATED 2 2 0
PAPSS2 WILD-TYPE 65 61 16
'PAPSS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1244.  Gene #131: 'PAPSS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
PAPSS2 MUTATED 2 1 1 0
PAPSS2 WILD-TYPE 60 35 27 20
'PAPSS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S1245.  Gene #131: 'PAPSS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
PAPSS2 MUTATED 4 0 0
PAPSS2 WILD-TYPE 85 35 22
'PAPSS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S1246.  Gene #131: 'PAPSS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
PAPSS2 MUTATED 3 0 1
PAPSS2 WILD-TYPE 59 51 30
'PAPSS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S1247.  Gene #131: 'PAPSS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
PAPSS2 MUTATED 1 3 0
PAPSS2 WILD-TYPE 74 42 24
'GPRC6A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0577 (Fisher's exact test), Q value = 1

Table S1248.  Gene #132: 'GPRC6A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
GPRC6A MUTATED 5 0 0
GPRC6A WILD-TYPE 61 65 14
'GPRC6A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S1249.  Gene #132: 'GPRC6A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
GPRC6A MUTATED 2 1 0 2
GPRC6A WILD-TYPE 36 28 45 32
'GPRC6A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S1250.  Gene #132: 'GPRC6A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
GPRC6A MUTATED 1 2 1 0 1
GPRC6A WILD-TYPE 33 14 10 11 12
'GPRC6A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S1251.  Gene #132: 'GPRC6A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
GPRC6A MUTATED 0 3 1 0 0 0 1
GPRC6A WILD-TYPE 12 14 20 9 6 14 5
'GPRC6A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S1252.  Gene #132: 'GPRC6A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
GPRC6A MUTATED 2 2 1
GPRC6A WILD-TYPE 69 41 31
'GPRC6A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S1253.  Gene #132: 'GPRC6A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
GPRC6A MUTATED 2 2 1
GPRC6A WILD-TYPE 65 61 15
'GPRC6A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0277 (Fisher's exact test), Q value = 1

Table S1254.  Gene #132: 'GPRC6A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
GPRC6A MUTATED 0 2 3 0
GPRC6A WILD-TYPE 62 34 25 20

Figure S58.  Get High-res Image Gene #132: 'GPRC6A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPRC6A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1255.  Gene #132: 'GPRC6A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
GPRC6A MUTATED 3 1 1
GPRC6A WILD-TYPE 86 34 21
'GPRC6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S1256.  Gene #132: 'GPRC6A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
GPRC6A MUTATED 2 3 0
GPRC6A WILD-TYPE 60 48 31
'GPRC6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S1257.  Gene #132: 'GPRC6A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
GPRC6A MUTATED 2 2 1
GPRC6A WILD-TYPE 73 43 23
'PDXDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S1258.  Gene #133: 'PDXDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
PDXDC1 MUTATED 1 1 1
PDXDC1 WILD-TYPE 65 64 13
'PDXDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S1259.  Gene #133: 'PDXDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
PDXDC1 MUTATED 1 0 2 0
PDXDC1 WILD-TYPE 37 29 43 34
'PDXDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1260.  Gene #133: 'PDXDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
PDXDC1 MUTATED 2 1 0
PDXDC1 WILD-TYPE 69 42 32
'PDXDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S1261.  Gene #133: 'PDXDC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
PDXDC1 MUTATED 3 0 0
PDXDC1 WILD-TYPE 64 63 16
'PDXDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1262.  Gene #133: 'PDXDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
PDXDC1 MUTATED 2 1 0 0
PDXDC1 WILD-TYPE 60 35 28 20
'PDXDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1263.  Gene #133: 'PDXDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
PDXDC1 MUTATED 2 1 0
PDXDC1 WILD-TYPE 87 34 22
'PDXDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S1264.  Gene #133: 'PDXDC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
PDXDC1 MUTATED 3 0 0
PDXDC1 WILD-TYPE 59 51 31
'PDXDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S1265.  Gene #133: 'PDXDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
PDXDC1 MUTATED 1 2 0
PDXDC1 WILD-TYPE 74 43 24
'TGM5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S1266.  Gene #134: 'TGM5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
TGM5 MUTATED 3 1 0
TGM5 WILD-TYPE 63 64 14
'TGM5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S1267.  Gene #134: 'TGM5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
TGM5 MUTATED 1 1 0 2
TGM5 WILD-TYPE 37 28 45 32
'TGM5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S1268.  Gene #134: 'TGM5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
TGM5 MUTATED 0 2 0 0 1
TGM5 WILD-TYPE 34 14 11 11 12
'TGM5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S1269.  Gene #134: 'TGM5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
TGM5 MUTATED 0 2 0 0 1 0 0
TGM5 WILD-TYPE 12 15 21 9 5 14 6
'TGM5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1270.  Gene #134: 'TGM5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
TGM5 MUTATED 2 1 1
TGM5 WILD-TYPE 69 42 31
'TGM5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1271.  Gene #134: 'TGM5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
TGM5 MUTATED 2 2 0
TGM5 WILD-TYPE 65 61 16
'TGM5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S1272.  Gene #134: 'TGM5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
TGM5 MUTATED 1 1 2 0
TGM5 WILD-TYPE 61 35 26 20
'TGM5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S1273.  Gene #134: 'TGM5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
TGM5 MUTATED 2 2 0
TGM5 WILD-TYPE 87 33 22
'TGM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S1274.  Gene #134: 'TGM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
TGM5 MUTATED 2 2 0
TGM5 WILD-TYPE 60 49 31
'TGM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S1275.  Gene #134: 'TGM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
TGM5 MUTATED 2 2 0
TGM5 WILD-TYPE 73 43 24
'NUP54 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S1276.  Gene #135: 'NUP54 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
NUP54 MUTATED 1 2 0
NUP54 WILD-TYPE 65 63 14
'NUP54 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S1277.  Gene #135: 'NUP54 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
NUP54 MUTATED 2 0 1 0
NUP54 WILD-TYPE 36 29 44 34
'NUP54 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S1278.  Gene #135: 'NUP54 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
NUP54 MUTATED 1 1 1 0 0
NUP54 WILD-TYPE 33 15 10 11 13
'NUP54 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0252 (Fisher's exact test), Q value = 1

Table S1279.  Gene #135: 'NUP54 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
NUP54 MUTATED 0 1 0 0 0 0 2
NUP54 WILD-TYPE 12 16 21 9 6 14 4

Figure S59.  Get High-res Image Gene #135: 'NUP54 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NUP54 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1280.  Gene #135: 'NUP54 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
NUP54 MUTATED 2 1 0
NUP54 WILD-TYPE 69 42 32
'NUP54 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S1281.  Gene #135: 'NUP54 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
NUP54 MUTATED 1 2 0
NUP54 WILD-TYPE 66 61 16
'NUP54 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1282.  Gene #135: 'NUP54 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
NUP54 MUTATED 2 1 0 0
NUP54 WILD-TYPE 60 35 28 20
'NUP54 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S1283.  Gene #135: 'NUP54 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
NUP54 MUTATED 3 0 0
NUP54 WILD-TYPE 86 35 22
'NUP54 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S1284.  Gene #135: 'NUP54 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
NUP54 MUTATED 3 0 0
NUP54 WILD-TYPE 59 51 31
'NUP54 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1285.  Gene #135: 'NUP54 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
NUP54 MUTATED 2 1 0
NUP54 WILD-TYPE 73 44 24
'NLRP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S1286.  Gene #136: 'NLRP6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
NLRP6 MUTATED 1 1 1
NLRP6 WILD-TYPE 65 64 13
'NLRP6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S1287.  Gene #136: 'NLRP6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
NLRP6 MUTATED 2 0 0 1
NLRP6 WILD-TYPE 36 29 45 33
'NLRP6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S1288.  Gene #136: 'NLRP6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
NLRP6 MUTATED 1 2 0
NLRP6 WILD-TYPE 70 41 32
'NLRP6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1289.  Gene #136: 'NLRP6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
NLRP6 MUTATED 2 1 0
NLRP6 WILD-TYPE 65 62 16
'NLRP6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S1290.  Gene #136: 'NLRP6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
NLRP6 MUTATED 1 2 0 0
NLRP6 WILD-TYPE 61 34 28 20
'NLRP6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1291.  Gene #136: 'NLRP6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
NLRP6 MUTATED 2 1 0
NLRP6 WILD-TYPE 87 34 22
'NLRP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S1292.  Gene #136: 'NLRP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
NLRP6 MUTATED 1 0 2
NLRP6 WILD-TYPE 61 51 29
'NLRP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1293.  Gene #136: 'NLRP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
NLRP6 MUTATED 2 1 0
NLRP6 WILD-TYPE 73 44 24
'DHX35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S1294.  Gene #137: 'DHX35 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
DHX35 MUTATED 3 1 0
DHX35 WILD-TYPE 63 64 14
'DHX35 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S1295.  Gene #137: 'DHX35 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
DHX35 MUTATED 2 0 0 2
DHX35 WILD-TYPE 36 29 45 32
'DHX35 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S1296.  Gene #137: 'DHX35 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
DHX35 MUTATED 1 1 0 0 1
DHX35 WILD-TYPE 33 15 11 11 12
'DHX35 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1297.  Gene #137: 'DHX35 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
DHX35 MUTATED 0 1 1 0 0 1 0
DHX35 WILD-TYPE 12 16 20 9 6 13 6
'DHX35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S1298.  Gene #137: 'DHX35 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
DHX35 MUTATED 3 0 1
DHX35 WILD-TYPE 68 43 31
'DHX35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S1299.  Gene #137: 'DHX35 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
DHX35 MUTATED 1 2 1
DHX35 WILD-TYPE 66 61 15
'DHX35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S1300.  Gene #137: 'DHX35 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
DHX35 MUTATED 2 0 2 0
DHX35 WILD-TYPE 60 36 26 20
'DHX35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S1301.  Gene #137: 'DHX35 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
DHX35 MUTATED 3 0 1
DHX35 WILD-TYPE 86 35 21
'DHX35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S1302.  Gene #137: 'DHX35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
DHX35 MUTATED 3 1 0
DHX35 WILD-TYPE 59 50 31
'DHX35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S1303.  Gene #137: 'DHX35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
DHX35 MUTATED 2 1 1
DHX35 WILD-TYPE 73 44 23
'CEACAM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S1304.  Gene #138: 'CEACAM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
CEACAM4 MUTATED 1 3 0
CEACAM4 WILD-TYPE 65 62 14
'CEACAM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S1305.  Gene #138: 'CEACAM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
CEACAM4 MUTATED 3 0 1 0
CEACAM4 WILD-TYPE 35 29 44 34
'CEACAM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S1306.  Gene #138: 'CEACAM4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
CEACAM4 MUTATED 1 1 2
CEACAM4 WILD-TYPE 70 42 30
'CEACAM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S1307.  Gene #138: 'CEACAM4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
CEACAM4 MUTATED 1 3 0
CEACAM4 WILD-TYPE 66 60 16
'CEACAM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S1308.  Gene #138: 'CEACAM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
CEACAM4 MUTATED 2 1 0 1
CEACAM4 WILD-TYPE 60 35 28 19
'CEACAM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S1309.  Gene #138: 'CEACAM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
CEACAM4 MUTATED 3 0 1
CEACAM4 WILD-TYPE 86 35 21
'CEACAM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S1310.  Gene #138: 'CEACAM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
CEACAM4 MUTATED 3 0 1
CEACAM4 WILD-TYPE 59 51 30
'CEACAM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1311.  Gene #138: 'CEACAM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
CEACAM4 MUTATED 3 1 0
CEACAM4 WILD-TYPE 72 44 24
'MMP13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 1

Table S1312.  Gene #139: 'MMP13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
MMP13 MUTATED 1 0 2
MMP13 WILD-TYPE 65 65 12

Figure S60.  Get High-res Image Gene #139: 'MMP13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MMP13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S1313.  Gene #139: 'MMP13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
MMP13 MUTATED 2 0 1 0
MMP13 WILD-TYPE 36 29 44 34
'MMP13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S1314.  Gene #139: 'MMP13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
MMP13 MUTATED 1 2 0
MMP13 WILD-TYPE 70 41 32
'MMP13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S1315.  Gene #139: 'MMP13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
MMP13 MUTATED 3 0 0
MMP13 WILD-TYPE 64 63 16
'MMP13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S1316.  Gene #139: 'MMP13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
MMP13 MUTATED 0 2 1 0
MMP13 WILD-TYPE 62 34 27 20
'MMP13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S1317.  Gene #139: 'MMP13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
MMP13 MUTATED 3 0 0
MMP13 WILD-TYPE 86 35 22
'MMP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S1318.  Gene #139: 'MMP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
MMP13 MUTATED 1 0 2
MMP13 WILD-TYPE 61 51 29
'MMP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1319.  Gene #139: 'MMP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
MMP13 MUTATED 2 1 0
MMP13 WILD-TYPE 73 44 24
'SYCP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0949 (Fisher's exact test), Q value = 1

Table S1320.  Gene #140: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
SYCP2 MUTATED 4 0 1
SYCP2 WILD-TYPE 62 65 13
'SYCP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S1321.  Gene #140: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
SYCP2 MUTATED 1 1 1 2
SYCP2 WILD-TYPE 37 28 44 32
'SYCP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S1322.  Gene #140: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
SYCP2 MUTATED 0 2 1 0 0
SYCP2 WILD-TYPE 34 14 10 11 13
'SYCP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S1323.  Gene #140: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
SYCP2 MUTATED 0 2 0 0 0 0 1
SYCP2 WILD-TYPE 12 15 21 9 6 14 5
'SYCP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S1324.  Gene #140: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
SYCP2 MUTATED 2 3 0
SYCP2 WILD-TYPE 69 40 32
'SYCP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1325.  Gene #140: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
SYCP2 MUTATED 3 2 0
SYCP2 WILD-TYPE 64 61 16
'SYCP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0527 (Fisher's exact test), Q value = 1

Table S1326.  Gene #140: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
SYCP2 MUTATED 0 3 2 0
SYCP2 WILD-TYPE 62 33 26 20
'SYCP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S1327.  Gene #140: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
SYCP2 MUTATED 3 2 0
SYCP2 WILD-TYPE 86 33 22
'SYCP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S1328.  Gene #140: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
SYCP2 MUTATED 2 1 2
SYCP2 WILD-TYPE 60 50 29
'SYCP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S1329.  Gene #140: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
SYCP2 MUTATED 2 3 0
SYCP2 WILD-TYPE 73 42 24
'LACTB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S1330.  Gene #141: 'LACTB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
LACTB MUTATED 3 0 0
LACTB WILD-TYPE 63 65 14
'LACTB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S1331.  Gene #141: 'LACTB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
LACTB MUTATED 1 1 0 1
LACTB WILD-TYPE 37 28 45 33
'LACTB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S1332.  Gene #141: 'LACTB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
LACTB MUTATED 0 2 1 0 0
LACTB WILD-TYPE 34 14 10 11 13
'LACTB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S1333.  Gene #141: 'LACTB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
LACTB MUTATED 0 2 0 0 0 0 1
LACTB WILD-TYPE 12 15 21 9 6 14 5
'LACTB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S1334.  Gene #141: 'LACTB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
LACTB MUTATED 1 2 0
LACTB WILD-TYPE 70 41 32
'LACTB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1335.  Gene #141: 'LACTB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
LACTB MUTATED 2 1 0
LACTB WILD-TYPE 65 62 16
'LACTB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S1336.  Gene #141: 'LACTB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
LACTB MUTATED 0 2 1 0
LACTB WILD-TYPE 62 34 27 20
'LACTB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1337.  Gene #141: 'LACTB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
LACTB MUTATED 2 1 0
LACTB WILD-TYPE 87 34 22
'LACTB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S1338.  Gene #141: 'LACTB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
LACTB MUTATED 2 1 0
LACTB WILD-TYPE 60 50 31
'LACTB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S1339.  Gene #141: 'LACTB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
LACTB MUTATED 1 2 0
LACTB WILD-TYPE 74 43 24
'TEKT4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S1340.  Gene #142: 'TEKT4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
TEKT4 MUTATED 5 1 0
TEKT4 WILD-TYPE 61 64 14
'TEKT4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S1341.  Gene #142: 'TEKT4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
TEKT4 MUTATED 3 1 0 2
TEKT4 WILD-TYPE 35 28 45 32
'TEKT4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S1342.  Gene #142: 'TEKT4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
TEKT4 MUTATED 1 0 2 1 0
TEKT4 WILD-TYPE 33 16 9 10 13
'TEKT4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S1343.  Gene #142: 'TEKT4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
TEKT4 MUTATED 0 0 1 1 0 1 1
TEKT4 WILD-TYPE 12 17 20 8 6 13 5
'TEKT4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S1344.  Gene #142: 'TEKT4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
TEKT4 MUTATED 2 3 1
TEKT4 WILD-TYPE 69 40 31
'TEKT4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S1345.  Gene #142: 'TEKT4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
TEKT4 MUTATED 3 2 1
TEKT4 WILD-TYPE 64 61 15
'TEKT4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0594 (Fisher's exact test), Q value = 1

Table S1346.  Gene #142: 'TEKT4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
TEKT4 MUTATED 0 3 2 1
TEKT4 WILD-TYPE 62 33 26 19
'TEKT4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S1347.  Gene #142: 'TEKT4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
TEKT4 MUTATED 3 2 1
TEKT4 WILD-TYPE 86 33 21
'TEKT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S1348.  Gene #142: 'TEKT4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
TEKT4 MUTATED 2 3 1
TEKT4 WILD-TYPE 60 48 30
'TEKT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S1349.  Gene #142: 'TEKT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
TEKT4 MUTATED 2 3 1
TEKT4 WILD-TYPE 73 42 23
'MC3R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S1350.  Gene #143: 'MC3R MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
MC3R MUTATED 1 2 1
MC3R WILD-TYPE 65 63 13
'MC3R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S1351.  Gene #143: 'MC3R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
MC3R MUTATED 3 0 1 0
MC3R WILD-TYPE 35 29 44 34
'MC3R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S1352.  Gene #143: 'MC3R MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
MC3R MUTATED 1 1 2 0 0
MC3R WILD-TYPE 33 15 9 11 13
'MC3R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S1353.  Gene #143: 'MC3R MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
MC3R MUTATED 0 1 1 1 0 0 1
MC3R WILD-TYPE 12 16 20 8 6 14 5
'MC3R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S1354.  Gene #143: 'MC3R MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
MC3R MUTATED 1 2 1
MC3R WILD-TYPE 70 41 31
'MC3R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1355.  Gene #143: 'MC3R MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
MC3R MUTATED 2 2 0
MC3R WILD-TYPE 65 61 16
'MC3R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S1356.  Gene #143: 'MC3R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
MC3R MUTATED 1 2 0 1
MC3R WILD-TYPE 61 34 28 19
'MC3R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1357.  Gene #143: 'MC3R MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
MC3R MUTATED 3 1 0
MC3R WILD-TYPE 86 34 22
'MC3R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1358.  Gene #143: 'MC3R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
MC3R MUTATED 2 1 1
MC3R WILD-TYPE 60 50 30
'MC3R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S1359.  Gene #143: 'MC3R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
MC3R MUTATED 2 2 0
MC3R WILD-TYPE 73 43 24
'CSRNP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S1360.  Gene #144: 'CSRNP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
CSRNP3 MUTATED 3 0 0
CSRNP3 WILD-TYPE 63 65 14
'CSRNP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S1361.  Gene #144: 'CSRNP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
CSRNP3 MUTATED 1 1 0 2
CSRNP3 WILD-TYPE 37 28 45 32
'CSRNP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0863 (Fisher's exact test), Q value = 1

Table S1362.  Gene #144: 'CSRNP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
CSRNP3 MUTATED 0 2 2
CSRNP3 WILD-TYPE 71 41 30
'CSRNP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0301 (Fisher's exact test), Q value = 1

Table S1363.  Gene #144: 'CSRNP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
CSRNP3 MUTATED 2 0 2
CSRNP3 WILD-TYPE 65 63 14

Figure S61.  Get High-res Image Gene #144: 'CSRNP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CSRNP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S1364.  Gene #144: 'CSRNP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
CSRNP3 MUTATED 0 2 1 1
CSRNP3 WILD-TYPE 62 34 27 19
'CSRNP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S1365.  Gene #144: 'CSRNP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
CSRNP3 MUTATED 1 1 2
CSRNP3 WILD-TYPE 88 34 20
'CSRNP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S1366.  Gene #144: 'CSRNP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
CSRNP3 MUTATED 1 3 0
CSRNP3 WILD-TYPE 61 48 31
'CSRNP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0401 (Fisher's exact test), Q value = 1

Table S1367.  Gene #144: 'CSRNP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
CSRNP3 MUTATED 0 2 2
CSRNP3 WILD-TYPE 75 43 22

Figure S62.  Get High-res Image Gene #144: 'CSRNP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PHF15 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1368.  Gene #145: 'PHF15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
PHF15 MUTATED 2 2 0
PHF15 WILD-TYPE 64 63 14
'PHF15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S1369.  Gene #145: 'PHF15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
PHF15 MUTATED 2 0 1 1
PHF15 WILD-TYPE 36 29 44 33
'PHF15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S1370.  Gene #145: 'PHF15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
PHF15 MUTATED 1 1 2 0 0
PHF15 WILD-TYPE 33 15 9 11 13
'PHF15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S1371.  Gene #145: 'PHF15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
PHF15 MUTATED 1 1 0 1 0 0 1
PHF15 WILD-TYPE 11 16 21 8 6 14 5
'PHF15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S1372.  Gene #145: 'PHF15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
PHF15 MUTATED 1 3 0
PHF15 WILD-TYPE 70 40 32
'PHF15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S1373.  Gene #145: 'PHF15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
PHF15 MUTATED 3 1 0
PHF15 WILD-TYPE 64 62 16
'PHF15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S1374.  Gene #145: 'PHF15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
PHF15 MUTATED 1 2 1 0
PHF15 WILD-TYPE 61 34 27 20
'PHF15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S1375.  Gene #145: 'PHF15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
PHF15 MUTATED 4 0 0
PHF15 WILD-TYPE 85 35 22
'PHF15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1376.  Gene #145: 'PHF15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
PHF15 MUTATED 2 1 1
PHF15 WILD-TYPE 60 50 30
'PHF15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S1377.  Gene #145: 'PHF15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
PHF15 MUTATED 2 2 0
PHF15 WILD-TYPE 73 43 24
'ZBTB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1378.  Gene #146: 'ZBTB4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
ZBTB4 MUTATED 2 2 0
ZBTB4 WILD-TYPE 64 63 14
'ZBTB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S1379.  Gene #146: 'ZBTB4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
ZBTB4 MUTATED 2 0 2 0
ZBTB4 WILD-TYPE 36 29 43 34
'ZBTB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S1380.  Gene #146: 'ZBTB4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
ZBTB4 MUTATED 0 2 1 0 0
ZBTB4 WILD-TYPE 34 14 10 11 13
'ZBTB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1381.  Gene #146: 'ZBTB4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
ZBTB4 MUTATED 0 1 1 0 0 0 1
ZBTB4 WILD-TYPE 12 16 20 9 6 14 5
'ZBTB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S1382.  Gene #146: 'ZBTB4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
ZBTB4 MUTATED 3 1 0
ZBTB4 WILD-TYPE 68 42 32
'ZBTB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S1383.  Gene #146: 'ZBTB4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
ZBTB4 MUTATED 1 3 0
ZBTB4 WILD-TYPE 66 60 16
'ZBTB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S1384.  Gene #146: 'ZBTB4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
ZBTB4 MUTATED 3 1 0 0
ZBTB4 WILD-TYPE 59 35 28 20
'ZBTB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S1385.  Gene #146: 'ZBTB4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
ZBTB4 MUTATED 4 0 0
ZBTB4 WILD-TYPE 85 35 22
'ZBTB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.078 (Fisher's exact test), Q value = 1

Table S1386.  Gene #146: 'ZBTB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
ZBTB4 MUTATED 4 0 0
ZBTB4 WILD-TYPE 58 51 31
'ZBTB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S1387.  Gene #146: 'ZBTB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
ZBTB4 MUTATED 2 2 0
ZBTB4 WILD-TYPE 73 43 24
'RSPO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1388.  Gene #147: 'RSPO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
RSPO1 MUTATED 2 1 0
RSPO1 WILD-TYPE 64 64 14
'RSPO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1389.  Gene #147: 'RSPO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
RSPO1 MUTATED 1 0 1 1
RSPO1 WILD-TYPE 37 29 44 33
'RSPO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S1390.  Gene #147: 'RSPO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
RSPO1 MUTATED 1 1 1
RSPO1 WILD-TYPE 70 42 31
'RSPO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1391.  Gene #147: 'RSPO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
RSPO1 MUTATED 2 1 0
RSPO1 WILD-TYPE 65 62 16
'RSPO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S1392.  Gene #147: 'RSPO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
RSPO1 MUTATED 1 1 1 0
RSPO1 WILD-TYPE 61 35 27 20
'RSPO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1393.  Gene #147: 'RSPO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
RSPO1 MUTATED 2 1 0
RSPO1 WILD-TYPE 87 34 22
'RSPO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S1394.  Gene #147: 'RSPO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
RSPO1 MUTATED 2 1 0
RSPO1 WILD-TYPE 60 50 31
'RSPO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S1395.  Gene #147: 'RSPO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
RSPO1 MUTATED 1 1 1
RSPO1 WILD-TYPE 74 44 23
'WWP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S1396.  Gene #148: 'WWP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
WWP2 MUTATED 4 1 0
WWP2 WILD-TYPE 62 64 14
'WWP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S1397.  Gene #148: 'WWP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
WWP2 MUTATED 1 1 1 2
WWP2 WILD-TYPE 37 28 44 32
'WWP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S1398.  Gene #148: 'WWP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
WWP2 MUTATED 2 2 1
WWP2 WILD-TYPE 69 41 31
'WWP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S1399.  Gene #148: 'WWP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
WWP2 MUTATED 1 3 1
WWP2 WILD-TYPE 66 60 15
'WWP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1400.  Gene #148: 'WWP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
WWP2 MUTATED 2 1 1 1
WWP2 WILD-TYPE 60 35 27 19
'WWP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1401.  Gene #148: 'WWP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
WWP2 MUTATED 3 1 1
WWP2 WILD-TYPE 86 34 21
'WWP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S1402.  Gene #148: 'WWP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
WWP2 MUTATED 2 3 0
WWP2 WILD-TYPE 60 48 31
'WWP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1403.  Gene #148: 'WWP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
WWP2 MUTATED 3 1 1
WWP2 WILD-TYPE 72 44 23
'CPNE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S1404.  Gene #149: 'CPNE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
CPNE2 MUTATED 3 0 0
CPNE2 WILD-TYPE 63 65 14
'CPNE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 1

Table S1405.  Gene #149: 'CPNE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
CPNE2 MUTATED 3 0 0 0
CPNE2 WILD-TYPE 35 29 45 34

Figure S63.  Get High-res Image Gene #149: 'CPNE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CPNE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S1406.  Gene #149: 'CPNE2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
CPNE2 MUTATED 1 0 1 1 0
CPNE2 WILD-TYPE 33 16 10 10 13
'CPNE2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S1407.  Gene #149: 'CPNE2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
CPNE2 MUTATED 0 0 2 0 0 0 1
CPNE2 WILD-TYPE 12 17 19 9 6 14 5
'CPNE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S1408.  Gene #149: 'CPNE2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
CPNE2 MUTATED 1 1 1
CPNE2 WILD-TYPE 70 42 31
'CPNE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S1409.  Gene #149: 'CPNE2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
CPNE2 MUTATED 1 1 1
CPNE2 WILD-TYPE 66 62 15
'CPNE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S1410.  Gene #149: 'CPNE2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
CPNE2 MUTATED 0 1 1 1
CPNE2 WILD-TYPE 62 35 27 19
'CPNE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S1411.  Gene #149: 'CPNE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
CPNE2 MUTATED 2 0 1
CPNE2 WILD-TYPE 87 35 21
'CPNE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S1412.  Gene #149: 'CPNE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
CPNE2 MUTATED 1 2 0
CPNE2 WILD-TYPE 61 49 31
'CPNE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S1413.  Gene #149: 'CPNE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
CPNE2 MUTATED 1 1 1
CPNE2 WILD-TYPE 74 44 23
'WDR36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S1414.  Gene #150: 'WDR36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
WDR36 MUTATED 3 0 0
WDR36 WILD-TYPE 63 65 14
'WDR36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0626 (Fisher's exact test), Q value = 1

Table S1415.  Gene #150: 'WDR36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
WDR36 MUTATED 0 2 0 1
WDR36 WILD-TYPE 38 27 45 33
'WDR36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S1416.  Gene #150: 'WDR36 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
WDR36 MUTATED 1 2 0
WDR36 WILD-TYPE 70 41 32
'WDR36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1417.  Gene #150: 'WDR36 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
WDR36 MUTATED 2 1 0
WDR36 WILD-TYPE 65 62 16
'WDR36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S1418.  Gene #150: 'WDR36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
WDR36 MUTATED 0 2 1 0
WDR36 WILD-TYPE 62 34 27 20
'WDR36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S1419.  Gene #150: 'WDR36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
WDR36 MUTATED 1 2 0
WDR36 WILD-TYPE 88 33 22
'WDR36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0523 (Fisher's exact test), Q value = 1

Table S1420.  Gene #150: 'WDR36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
WDR36 MUTATED 0 3 0
WDR36 WILD-TYPE 62 48 31
'WDR36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S1421.  Gene #150: 'WDR36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
WDR36 MUTATED 1 2 0
WDR36 WILD-TYPE 74 43 24
'CYTH4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S1422.  Gene #151: 'CYTH4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
CYTH4 MUTATED 1 2 0
CYTH4 WILD-TYPE 65 63 14
'CYTH4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S1423.  Gene #151: 'CYTH4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
CYTH4 MUTATED 2 0 0 1
CYTH4 WILD-TYPE 36 29 45 33
'CYTH4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1424.  Gene #151: 'CYTH4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
CYTH4 MUTATED 2 1 0
CYTH4 WILD-TYPE 69 42 32
'CYTH4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1425.  Gene #151: 'CYTH4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
CYTH4 MUTATED 2 1 0
CYTH4 WILD-TYPE 65 62 16
'CYTH4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S1426.  Gene #151: 'CYTH4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
CYTH4 MUTATED 1 1 1 0
CYTH4 WILD-TYPE 61 35 27 20
'CYTH4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1427.  Gene #151: 'CYTH4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
CYTH4 MUTATED 2 1 0
CYTH4 WILD-TYPE 87 34 22
'CYTH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1428.  Gene #151: 'CYTH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
CYTH4 MUTATED 1 1 1
CYTH4 WILD-TYPE 61 50 30
'CYTH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0586 (Fisher's exact test), Q value = 1

Table S1429.  Gene #151: 'CYTH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
CYTH4 MUTATED 0 3 0
CYTH4 WILD-TYPE 75 42 24
'BOC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S1430.  Gene #152: 'BOC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
BOC MUTATED 1 2 1
BOC WILD-TYPE 65 63 13
'BOC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1431.  Gene #152: 'BOC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
BOC MUTATED 2 0 1 1
BOC WILD-TYPE 36 29 44 33
'BOC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1432.  Gene #152: 'BOC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
BOC MUTATED 2 1 1
BOC WILD-TYPE 69 42 31
'BOC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1433.  Gene #152: 'BOC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
BOC MUTATED 2 2 0
BOC WILD-TYPE 65 61 16
'BOC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1434.  Gene #152: 'BOC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
BOC MUTATED 2 1 1 0
BOC WILD-TYPE 60 35 27 20
'BOC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S1435.  Gene #152: 'BOC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
BOC MUTATED 3 0 1
BOC WILD-TYPE 86 35 21
'BOC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1436.  Gene #152: 'BOC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
BOC MUTATED 2 1 1
BOC WILD-TYPE 60 50 30
'BOC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S1437.  Gene #152: 'BOC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
BOC MUTATED 2 1 1
BOC WILD-TYPE 73 44 23
'C5ORF51 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S1438.  Gene #153: 'C5ORF51 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
C5ORF51 MUTATED 2 0 1
C5ORF51 WILD-TYPE 64 65 13
'C5ORF51 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S1439.  Gene #153: 'C5ORF51 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
C5ORF51 MUTATED 2 0 0 1
C5ORF51 WILD-TYPE 36 29 45 33
'C5ORF51 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S1440.  Gene #153: 'C5ORF51 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
C5ORF51 MUTATED 0 1 1 0 1
C5ORF51 WILD-TYPE 34 15 10 11 12
'C5ORF51 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S1441.  Gene #153: 'C5ORF51 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
C5ORF51 MUTATED 0 1 0 0 0 1 1
C5ORF51 WILD-TYPE 12 16 21 9 6 13 5
'C5ORF51 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1442.  Gene #153: 'C5ORF51 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
C5ORF51 MUTATED 2 1 0
C5ORF51 WILD-TYPE 69 42 32
'C5ORF51 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S1443.  Gene #153: 'C5ORF51 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
C5ORF51 MUTATED 1 2 0
C5ORF51 WILD-TYPE 66 61 16
'C5ORF51 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S1444.  Gene #153: 'C5ORF51 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
C5ORF51 MUTATED 0 1 2 0
C5ORF51 WILD-TYPE 62 35 26 20
'C5ORF51 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S1445.  Gene #153: 'C5ORF51 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
C5ORF51 MUTATED 3 0 0
C5ORF51 WILD-TYPE 86 35 22
'LILRB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S1446.  Gene #154: 'LILRB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
LILRB2 MUTATED 4 0 0
LILRB2 WILD-TYPE 62 65 14
'LILRB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S1447.  Gene #154: 'LILRB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
LILRB2 MUTATED 1 1 0 2
LILRB2 WILD-TYPE 37 28 45 32
'LILRB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S1448.  Gene #154: 'LILRB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
LILRB2 MUTATED 1 0 1 1 0
LILRB2 WILD-TYPE 33 16 10 10 13
'LILRB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S1449.  Gene #154: 'LILRB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
LILRB2 MUTATED 0 0 1 0 0 1 1
LILRB2 WILD-TYPE 12 17 20 9 6 13 5
'LILRB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0882 (Fisher's exact test), Q value = 1

Table S1450.  Gene #154: 'LILRB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
LILRB2 MUTATED 0 2 2
LILRB2 WILD-TYPE 71 41 30
'LILRB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0312 (Fisher's exact test), Q value = 1

Table S1451.  Gene #154: 'LILRB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
LILRB2 MUTATED 2 0 2
LILRB2 WILD-TYPE 65 63 14

Figure S64.  Get High-res Image Gene #154: 'LILRB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LILRB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0519 (Fisher's exact test), Q value = 1

Table S1452.  Gene #154: 'LILRB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
LILRB2 MUTATED 0 1 1 2
LILRB2 WILD-TYPE 62 35 27 18
'LILRB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S1453.  Gene #154: 'LILRB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
LILRB2 MUTATED 1 1 2
LILRB2 WILD-TYPE 88 34 20
'LILRB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S1454.  Gene #154: 'LILRB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
LILRB2 MUTATED 1 3 0
LILRB2 WILD-TYPE 61 48 31
'LILRB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0384 (Fisher's exact test), Q value = 1

Table S1455.  Gene #154: 'LILRB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
LILRB2 MUTATED 0 2 2
LILRB2 WILD-TYPE 75 43 22

Figure S65.  Get High-res Image Gene #154: 'LILRB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FLVCR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1456.  Gene #155: 'FLVCR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
FLVCR1 MUTATED 2 1 0
FLVCR1 WILD-TYPE 64 64 14
'FLVCR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1457.  Gene #155: 'FLVCR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
FLVCR1 MUTATED 1 0 1 1
FLVCR1 WILD-TYPE 37 29 44 33
'FLVCR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1458.  Gene #155: 'FLVCR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
FLVCR1 MUTATED 2 1 0
FLVCR1 WILD-TYPE 69 42 32
'FLVCR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1459.  Gene #155: 'FLVCR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
FLVCR1 MUTATED 2 1 0
FLVCR1 WILD-TYPE 65 62 16
'FLVCR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S1460.  Gene #155: 'FLVCR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
FLVCR1 MUTATED 1 1 1 0
FLVCR1 WILD-TYPE 61 35 27 20
'FLVCR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S1461.  Gene #155: 'FLVCR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
FLVCR1 MUTATED 3 0 0
FLVCR1 WILD-TYPE 86 35 22
'FLVCR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S1462.  Gene #155: 'FLVCR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
FLVCR1 MUTATED 2 0 1
FLVCR1 WILD-TYPE 60 51 30
'FLVCR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S1463.  Gene #155: 'FLVCR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
FLVCR1 MUTATED 1 2 0
FLVCR1 WILD-TYPE 74 43 24
'ZNF483 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S1464.  Gene #156: 'ZNF483 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
ZNF483 MUTATED 1 3 0
ZNF483 WILD-TYPE 65 62 14
'ZNF483 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1465.  Gene #156: 'ZNF483 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
ZNF483 MUTATED 1 1 1 1
ZNF483 WILD-TYPE 37 28 44 33
'ZNF483 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S1466.  Gene #156: 'ZNF483 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
ZNF483 MUTATED 0 0 1 1 1
ZNF483 WILD-TYPE 34 16 10 10 12
'ZNF483 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S1467.  Gene #156: 'ZNF483 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
ZNF483 MUTATED 0 0 1 1 0 1 0
ZNF483 WILD-TYPE 12 17 20 8 6 13 6
'ZNF483 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S1468.  Gene #156: 'ZNF483 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
ZNF483 MUTATED 2 2 0
ZNF483 WILD-TYPE 69 41 32
'ZNF483 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S1469.  Gene #156: 'ZNF483 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
ZNF483 MUTATED 3 1 0
ZNF483 WILD-TYPE 64 62 16
'ZNF483 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S1470.  Gene #156: 'ZNF483 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
ZNF483 MUTATED 2 2 0 0
ZNF483 WILD-TYPE 60 34 28 20
'ZNF483 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1471.  Gene #156: 'ZNF483 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
ZNF483 MUTATED 3 1 0
ZNF483 WILD-TYPE 86 34 22
'ZNF483 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S1472.  Gene #156: 'ZNF483 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
ZNF483 MUTATED 3 1 0
ZNF483 WILD-TYPE 59 50 31
'ZNF483 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S1473.  Gene #156: 'ZNF483 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
ZNF483 MUTATED 1 3 0
ZNF483 WILD-TYPE 74 42 24
'NDUFV2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S1474.  Gene #157: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
NDUFV2 MUTATED 0 3 0
NDUFV2 WILD-TYPE 66 62 14
'NDUFV2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S1475.  Gene #157: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
NDUFV2 MUTATED 2 0 1 0
NDUFV2 WILD-TYPE 36 29 44 34
'NDUFV2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S1476.  Gene #157: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
NDUFV2 MUTATED 3 0 0 0 0
NDUFV2 WILD-TYPE 31 16 11 11 13
'NDUFV2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.047 (Fisher's exact test), Q value = 1

Table S1477.  Gene #157: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
NDUFV2 MUTATED 2 0 0 0 0 0 1
NDUFV2 WILD-TYPE 10 17 21 9 6 14 5

Figure S66.  Get High-res Image Gene #157: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NDUFV2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S1478.  Gene #157: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
NDUFV2 MUTATED 3 0 0
NDUFV2 WILD-TYPE 68 43 32
'NDUFV2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S1479.  Gene #157: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
NDUFV2 MUTATED 0 3 0
NDUFV2 WILD-TYPE 67 60 16
'NDUFV2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S1480.  Gene #157: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
NDUFV2 MUTATED 3 0 0 0
NDUFV2 WILD-TYPE 59 36 28 20
'NDUFV2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S1481.  Gene #157: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
NDUFV2 MUTATED 3 0 0
NDUFV2 WILD-TYPE 86 35 22
'NDUFV2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S1482.  Gene #157: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
NDUFV2 MUTATED 2 0 1
NDUFV2 WILD-TYPE 60 51 30
'NDUFV2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S1483.  Gene #157: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
NDUFV2 MUTATED 3 0 0
NDUFV2 WILD-TYPE 72 45 24
'PSMB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S1484.  Gene #158: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
PSMB4 MUTATED 2 1 1
PSMB4 WILD-TYPE 64 64 13
'PSMB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S1485.  Gene #158: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
PSMB4 MUTATED 2 0 0 2
PSMB4 WILD-TYPE 36 29 45 32
'PSMB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S1486.  Gene #158: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
PSMB4 MUTATED 3 0 0 0 0
PSMB4 WILD-TYPE 31 16 11 11 13
'PSMB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S1487.  Gene #158: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
PSMB4 MUTATED 1 0 1 0 0 1 0
PSMB4 WILD-TYPE 11 17 20 9 6 13 6
'PSMB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S1488.  Gene #158: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
PSMB4 MUTATED 3 0 1
PSMB4 WILD-TYPE 68 43 31
'PSMB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S1489.  Gene #158: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
PSMB4 MUTATED 1 2 1
PSMB4 WILD-TYPE 66 61 15
'PSMB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S1490.  Gene #158: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
PSMB4 MUTATED 2 0 1 1
PSMB4 WILD-TYPE 60 36 27 19
'PSMB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S1491.  Gene #158: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
PSMB4 MUTATED 4 0 0
PSMB4 WILD-TYPE 85 35 22
'PSMB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S1492.  Gene #158: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
PSMB4 MUTATED 2 2 0
PSMB4 WILD-TYPE 60 49 31
'PSMB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1493.  Gene #158: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
PSMB4 MUTATED 3 1 0
PSMB4 WILD-TYPE 72 44 24
'KIAA1045 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S1494.  Gene #159: 'KIAA1045 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
KIAA1045 MUTATED 4 1 0
KIAA1045 WILD-TYPE 62 64 14
'KIAA1045 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S1495.  Gene #159: 'KIAA1045 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
KIAA1045 MUTATED 1 1 0 3
KIAA1045 WILD-TYPE 37 28 45 31
'KIAA1045 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S1496.  Gene #159: 'KIAA1045 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
KIAA1045 MUTATED 0 1 1 1 1
KIAA1045 WILD-TYPE 34 15 10 10 12
'KIAA1045 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S1497.  Gene #159: 'KIAA1045 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
KIAA1045 MUTATED 0 1 0 0 1 1 1
KIAA1045 WILD-TYPE 12 16 21 9 5 13 5
'KIAA1045 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S1498.  Gene #159: 'KIAA1045 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
KIAA1045 MUTATED 1 1 3
KIAA1045 WILD-TYPE 70 42 29
'KIAA1045 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S1499.  Gene #159: 'KIAA1045 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
KIAA1045 MUTATED 4 1 0
KIAA1045 WILD-TYPE 63 62 16
'KIAA1045 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 1

Table S1500.  Gene #159: 'KIAA1045 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
KIAA1045 MUTATED 0 2 3 0
KIAA1045 WILD-TYPE 62 34 25 20

Figure S67.  Get High-res Image Gene #159: 'KIAA1045 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA1045 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S1501.  Gene #159: 'KIAA1045 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
KIAA1045 MUTATED 2 2 1
KIAA1045 WILD-TYPE 87 33 21
'KIAA1045 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S1502.  Gene #159: 'KIAA1045 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
KIAA1045 MUTATED 2 3 0
KIAA1045 WILD-TYPE 60 48 31
'KIAA1045 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S1503.  Gene #159: 'KIAA1045 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
KIAA1045 MUTATED 1 2 2
KIAA1045 WILD-TYPE 74 43 22
'KLK15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S1504.  Gene #160: 'KLK15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
KLK15 MUTATED 3 1 1
KLK15 WILD-TYPE 63 64 13
'KLK15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 1

Table S1505.  Gene #160: 'KLK15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
KLK15 MUTATED 4 1 0 0
KLK15 WILD-TYPE 34 28 45 34

Figure S68.  Get High-res Image Gene #160: 'KLK15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KLK15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S1506.  Gene #160: 'KLK15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
KLK15 MUTATED 1 3 1
KLK15 WILD-TYPE 70 40 31
'KLK15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S1507.  Gene #160: 'KLK15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
KLK15 MUTATED 3 1 1
KLK15 WILD-TYPE 64 62 15
'KLK15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S1508.  Gene #160: 'KLK15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
KLK15 MUTATED 1 3 0 1
KLK15 WILD-TYPE 61 33 28 19
'KLK15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S1509.  Gene #160: 'KLK15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
KLK15 MUTATED 2 2 1
KLK15 WILD-TYPE 87 33 21
'KLK15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1510.  Gene #160: 'KLK15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
KLK15 MUTATED 2 2 1
KLK15 WILD-TYPE 60 49 30
'KLK15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S1511.  Gene #160: 'KLK15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
KLK15 MUTATED 1 3 1
KLK15 WILD-TYPE 74 42 23
'ZNF660 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S1512.  Gene #161: 'ZNF660 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
ZNF660 MUTATED 3 0 0
ZNF660 WILD-TYPE 63 65 14
'ZNF660 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S1513.  Gene #161: 'ZNF660 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
ZNF660 MUTATED 2 0 0 1
ZNF660 WILD-TYPE 36 29 45 33
'ZNF660 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S1514.  Gene #161: 'ZNF660 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
ZNF660 MUTATED 1 1 1 0 0
ZNF660 WILD-TYPE 33 15 10 11 13
'ZNF660 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S1515.  Gene #161: 'ZNF660 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
ZNF660 MUTATED 0 1 0 0 0 1 1
ZNF660 WILD-TYPE 12 16 21 9 6 13 5
'ZNF660 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S1516.  Gene #161: 'ZNF660 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
ZNF660 MUTATED 1 2 0
ZNF660 WILD-TYPE 70 41 32
'ZNF660 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1517.  Gene #161: 'ZNF660 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
ZNF660 MUTATED 2 1 0
ZNF660 WILD-TYPE 65 62 16
'ZNF660 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S1518.  Gene #161: 'ZNF660 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
ZNF660 MUTATED 0 2 1 0
ZNF660 WILD-TYPE 62 34 27 20
'ZNF660 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1519.  Gene #161: 'ZNF660 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
ZNF660 MUTATED 2 1 0
ZNF660 WILD-TYPE 87 34 22
'ZNF660 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S1520.  Gene #161: 'ZNF660 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
ZNF660 MUTATED 2 1 0
ZNF660 WILD-TYPE 60 50 31
'ZNF660 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S1521.  Gene #161: 'ZNF660 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
ZNF660 MUTATED 1 2 0
ZNF660 WILD-TYPE 74 43 24
'CCDC87 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S1522.  Gene #162: 'CCDC87 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
CCDC87 MUTATED 1 1 1
CCDC87 WILD-TYPE 65 64 13
'CCDC87 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S1523.  Gene #162: 'CCDC87 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
CCDC87 MUTATED 0 0 2 1
CCDC87 WILD-TYPE 38 29 43 33
'CCDC87 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S1524.  Gene #162: 'CCDC87 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
CCDC87 MUTATED 1 1 0 0 1
CCDC87 WILD-TYPE 33 15 11 11 12
'CCDC87 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S1525.  Gene #162: 'CCDC87 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
CCDC87 MUTATED 1 1 0 0 1 0 0
CCDC87 WILD-TYPE 11 16 21 9 5 14 6
'CCDC87 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S1526.  Gene #162: 'CCDC87 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
CCDC87 MUTATED 2 0 1
CCDC87 WILD-TYPE 69 43 31
'CCDC87 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S1527.  Gene #162: 'CCDC87 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
CCDC87 MUTATED 1 2 0
CCDC87 WILD-TYPE 66 61 16
'CCDC87 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S1528.  Gene #162: 'CCDC87 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
CCDC87 MUTATED 2 0 1 0
CCDC87 WILD-TYPE 60 36 27 20
'CCDC87 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S1529.  Gene #162: 'CCDC87 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
CCDC87 MUTATED 2 0 1
CCDC87 WILD-TYPE 87 35 21
'CCDC87 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1530.  Gene #162: 'CCDC87 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
CCDC87 MUTATED 1 1 1
CCDC87 WILD-TYPE 61 50 30
'CCDC87 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S1531.  Gene #162: 'CCDC87 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
CCDC87 MUTATED 2 0 1
CCDC87 WILD-TYPE 73 45 23
'KIF4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S1532.  Gene #163: 'KIF4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
KIF4B MUTATED 3 1 1
KIF4B WILD-TYPE 63 64 13
'KIF4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S1533.  Gene #163: 'KIF4B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
KIF4B MUTATED 2 1 1 1
KIF4B WILD-TYPE 36 28 44 33
'KIF4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S1534.  Gene #163: 'KIF4B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
KIF4B MUTATED 0 2 1 1 0
KIF4B WILD-TYPE 34 14 10 10 13
'KIF4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S1535.  Gene #163: 'KIF4B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
KIF4B MUTATED 0 2 1 0 0 0 1
KIF4B WILD-TYPE 12 15 20 9 6 14 5
'KIF4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S1536.  Gene #163: 'KIF4B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
KIF4B MUTATED 2 2 1
KIF4B WILD-TYPE 69 41 31
'KIF4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S1537.  Gene #163: 'KIF4B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
KIF4B MUTATED 2 2 1
KIF4B WILD-TYPE 65 61 15
'KIF4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S1538.  Gene #163: 'KIF4B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
KIF4B MUTATED 1 2 1 1
KIF4B WILD-TYPE 61 34 27 19
'KIF4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1539.  Gene #163: 'KIF4B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
KIF4B MUTATED 3 1 1
KIF4B WILD-TYPE 86 34 21
'KIF4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S1540.  Gene #163: 'KIF4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
KIF4B MUTATED 3 1 1
KIF4B WILD-TYPE 59 50 30
'KIF4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S1541.  Gene #163: 'KIF4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
KIF4B MUTATED 2 2 1
KIF4B WILD-TYPE 73 43 23
'ENPP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S1542.  Gene #164: 'ENPP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
ENPP7 MUTATED 4 1 0
ENPP7 WILD-TYPE 62 64 14
'ENPP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0471 (Fisher's exact test), Q value = 1

Table S1543.  Gene #164: 'ENPP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
ENPP7 MUTATED 4 0 1 0
ENPP7 WILD-TYPE 34 29 44 34

Figure S69.  Get High-res Image Gene #164: 'ENPP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ENPP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S1544.  Gene #164: 'ENPP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
ENPP7 MUTATED 1 1 1 1 0
ENPP7 WILD-TYPE 33 15 10 10 13
'ENPP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S1545.  Gene #164: 'ENPP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
ENPP7 MUTATED 0 0 3 0 0 0 1
ENPP7 WILD-TYPE 12 17 18 9 6 14 5
'ENPP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S1546.  Gene #164: 'ENPP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
ENPP7 MUTATED 4 1 0
ENPP7 WILD-TYPE 67 42 32
'ENPP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S1547.  Gene #164: 'ENPP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
ENPP7 MUTATED 2 3 0
ENPP7 WILD-TYPE 65 60 16
'ENPP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1548.  Gene #164: 'ENPP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
ENPP7 MUTATED 3 1 1 0
ENPP7 WILD-TYPE 59 35 27 20
'ENPP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S1549.  Gene #164: 'ENPP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
ENPP7 MUTATED 5 0 0
ENPP7 WILD-TYPE 84 35 22
'ENPP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S1550.  Gene #164: 'ENPP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
ENPP7 MUTATED 4 1 0
ENPP7 WILD-TYPE 58 50 31
'ENPP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S1551.  Gene #164: 'ENPP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
ENPP7 MUTATED 4 1 0
ENPP7 WILD-TYPE 71 44 24
'TNRC6C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S1552.  Gene #165: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
TNRC6C MUTATED 4 2 0
TNRC6C WILD-TYPE 62 63 14
'TNRC6C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S1553.  Gene #165: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
TNRC6C MUTATED 2 3 1 0
TNRC6C WILD-TYPE 36 26 44 34
'TNRC6C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0238 (Fisher's exact test), Q value = 1

Table S1554.  Gene #165: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
TNRC6C MUTATED 0 0 2 1 0
TNRC6C WILD-TYPE 34 16 9 10 13

Figure S70.  Get High-res Image Gene #165: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TNRC6C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S1555.  Gene #165: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
TNRC6C MUTATED 0 0 1 1 0 0 1
TNRC6C WILD-TYPE 12 17 20 8 6 14 5
'TNRC6C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0749 (Fisher's exact test), Q value = 1

Table S1556.  Gene #165: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
TNRC6C MUTATED 1 4 1
TNRC6C WILD-TYPE 70 39 31
'TNRC6C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S1557.  Gene #165: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
TNRC6C MUTATED 4 1 1
TNRC6C WILD-TYPE 63 62 15
'TNRC6C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S1558.  Gene #165: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
TNRC6C MUTATED 1 3 1 1
TNRC6C WILD-TYPE 61 33 27 19
'TNRC6C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S1559.  Gene #165: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
TNRC6C MUTATED 2 3 1
TNRC6C WILD-TYPE 87 32 21
'TNRC6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S1560.  Gene #165: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
TNRC6C MUTATED 3 3 0
TNRC6C WILD-TYPE 59 48 31
'TNRC6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S1561.  Gene #165: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
TNRC6C MUTATED 1 4 1
TNRC6C WILD-TYPE 74 41 23
'NAA40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S1562.  Gene #166: 'NAA40 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
NAA40 MUTATED 3 0 0
NAA40 WILD-TYPE 63 65 14
'NAA40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S1563.  Gene #166: 'NAA40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
NAA40 MUTATED 1 1 1 0
NAA40 WILD-TYPE 37 28 44 34
'NAA40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S1564.  Gene #166: 'NAA40 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
NAA40 MUTATED 1 1 1
NAA40 WILD-TYPE 70 42 31
'NAA40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1565.  Gene #166: 'NAA40 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
NAA40 MUTATED 2 1 0
NAA40 WILD-TYPE 65 62 16
'NAA40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S1566.  Gene #166: 'NAA40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
NAA40 MUTATED 1 2 0 0
NAA40 WILD-TYPE 61 34 28 20
'NAA40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1567.  Gene #166: 'NAA40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
NAA40 MUTATED 2 1 0
NAA40 WILD-TYPE 87 34 22
'NAA40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S1568.  Gene #166: 'NAA40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
NAA40 MUTATED 2 0 1
NAA40 WILD-TYPE 60 51 30
'NAA40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S1569.  Gene #166: 'NAA40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
NAA40 MUTATED 1 2 0
NAA40 WILD-TYPE 74 43 24
'AKAP13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S1570.  Gene #167: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
AKAP13 MUTATED 5 1 0
AKAP13 WILD-TYPE 61 64 14
'AKAP13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S1571.  Gene #167: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
AKAP13 MUTATED 2 2 1 1
AKAP13 WILD-TYPE 36 27 44 33
'AKAP13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S1572.  Gene #167: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
AKAP13 MUTATED 0 1 1 1 0
AKAP13 WILD-TYPE 34 15 10 10 13
'AKAP13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S1573.  Gene #167: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
AKAP13 MUTATED 0 1 0 0 0 1 1
AKAP13 WILD-TYPE 12 16 21 9 6 13 5
'AKAP13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1574.  Gene #167: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
AKAP13 MUTATED 3 2 1
AKAP13 WILD-TYPE 68 41 31
'AKAP13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S1575.  Gene #167: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
AKAP13 MUTATED 4 2 0
AKAP13 WILD-TYPE 63 61 16
'AKAP13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S1576.  Gene #167: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
AKAP13 MUTATED 1 2 3 0
AKAP13 WILD-TYPE 61 34 25 20
'AKAP13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S1577.  Gene #167: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
AKAP13 MUTATED 4 2 0
AKAP13 WILD-TYPE 85 33 22
'AKAP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S1578.  Gene #167: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
AKAP13 MUTATED 2 3 1
AKAP13 WILD-TYPE 60 48 30
'AKAP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S1579.  Gene #167: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
AKAP13 MUTATED 1 4 1
AKAP13 WILD-TYPE 74 41 23
'ASH1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S1580.  Gene #168: 'ASH1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
ASH1L MUTATED 5 1 0
ASH1L WILD-TYPE 61 64 14
'ASH1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S1581.  Gene #168: 'ASH1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
ASH1L MUTATED 2 0 1 3
ASH1L WILD-TYPE 36 29 44 31
'ASH1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S1582.  Gene #168: 'ASH1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
ASH1L MUTATED 2 2 1 0 0
ASH1L WILD-TYPE 32 14 10 11 13
'ASH1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S1583.  Gene #168: 'ASH1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
ASH1L MUTATED 1 2 1 0 0 0 1
ASH1L WILD-TYPE 11 15 20 9 6 14 5
'ASH1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S1584.  Gene #168: 'ASH1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
ASH1L MUTATED 3 1 2
ASH1L WILD-TYPE 68 42 30
'ASH1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S1585.  Gene #168: 'ASH1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
ASH1L MUTATED 1 5 0
ASH1L WILD-TYPE 66 58 16
'ASH1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 1

Table S1586.  Gene #168: 'ASH1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
ASH1L MUTATED 0 1 3 2
ASH1L WILD-TYPE 62 35 25 18

Figure S71.  Get High-res Image Gene #168: 'ASH1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ASH1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S1587.  Gene #168: 'ASH1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
ASH1L MUTATED 5 0 1
ASH1L WILD-TYPE 84 35 21
'ASH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S1588.  Gene #168: 'ASH1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
ASH1L MUTATED 2 2 2
ASH1L WILD-TYPE 60 49 29
'ASH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S1589.  Gene #168: 'ASH1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
ASH1L MUTATED 4 1 1
ASH1L WILD-TYPE 71 44 23
'ATP2C2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1590.  Gene #169: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
ATP2C2 MUTATED 2 2 0
ATP2C2 WILD-TYPE 64 63 14
'ATP2C2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S1591.  Gene #169: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
ATP2C2 MUTATED 3 0 0 1
ATP2C2 WILD-TYPE 35 29 45 33
'ATP2C2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S1592.  Gene #169: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
ATP2C2 MUTATED 1 0 2 0 0
ATP2C2 WILD-TYPE 33 16 9 11 13
'ATP2C2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S1593.  Gene #169: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
ATP2C2 MUTATED 1 0 0 1 0 0 1
ATP2C2 WILD-TYPE 11 17 21 8 6 14 5
'ATP2C2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 1

Table S1594.  Gene #169: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
ATP2C2 MUTATED 0 2 2
ATP2C2 WILD-TYPE 71 41 30
'ATP2C2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S1595.  Gene #169: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
ATP2C2 MUTATED 3 1 0
ATP2C2 WILD-TYPE 64 62 16
'ATP2C2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S1596.  Gene #169: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
ATP2C2 MUTATED 0 2 1 1
ATP2C2 WILD-TYPE 62 34 27 19
'ATP2C2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S1597.  Gene #169: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
ATP2C2 MUTATED 1 2 1
ATP2C2 WILD-TYPE 88 33 21
'ATP2C2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S1598.  Gene #169: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
ATP2C2 MUTATED 1 2 1
ATP2C2 WILD-TYPE 61 49 30
'ATP2C2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0394 (Fisher's exact test), Q value = 1

Table S1599.  Gene #169: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
ATP2C2 MUTATED 0 2 2
ATP2C2 WILD-TYPE 75 43 22

Figure S72.  Get High-res Image Gene #169: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ANKRD30A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S1600.  Gene #170: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
ANKRD30A MUTATED 3 4 1
ANKRD30A WILD-TYPE 63 61 13
'ANKRD30A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1601.  Gene #170: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
ANKRD30A MUTATED 2 1 3 2
ANKRD30A WILD-TYPE 36 28 42 32
'ANKRD30A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S1602.  Gene #170: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
ANKRD30A MUTATED 1 1 1 1 1
ANKRD30A WILD-TYPE 33 15 10 10 12
'ANKRD30A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S1603.  Gene #170: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
ANKRD30A MUTATED 0 1 1 0 1 1 1
ANKRD30A WILD-TYPE 12 16 20 9 5 13 5
'ANKRD30A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S1604.  Gene #170: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
ANKRD30A MUTATED 2 4 2
ANKRD30A WILD-TYPE 69 39 30
'ANKRD30A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S1605.  Gene #170: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
ANKRD30A MUTATED 3 3 2
ANKRD30A WILD-TYPE 64 60 14
'ANKRD30A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S1606.  Gene #170: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
ANKRD30A MUTATED 3 2 2 1
ANKRD30A WILD-TYPE 59 34 26 19
'ANKRD30A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S1607.  Gene #170: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
ANKRD30A MUTATED 5 1 2
ANKRD30A WILD-TYPE 84 34 20
'ANKRD30A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S1608.  Gene #170: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
ANKRD30A MUTATED 2 3 3
ANKRD30A WILD-TYPE 60 48 28
'ANKRD30A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1609.  Gene #170: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
ANKRD30A MUTATED 4 2 2
ANKRD30A WILD-TYPE 71 43 22
'MKI67 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S1610.  Gene #171: 'MKI67 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
MKI67 MUTATED 3 2 1
MKI67 WILD-TYPE 63 63 13
'MKI67 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S1611.  Gene #171: 'MKI67 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
MKI67 MUTATED 2 2 1 1
MKI67 WILD-TYPE 36 27 44 33
'MKI67 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S1612.  Gene #171: 'MKI67 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
MKI67 MUTATED 1 0 1 2 0
MKI67 WILD-TYPE 33 16 10 9 13
'MKI67 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S1613.  Gene #171: 'MKI67 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
MKI67 MUTATED 1 0 1 0 0 1 1
MKI67 WILD-TYPE 11 17 20 9 6 13 5
'MKI67 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S1614.  Gene #171: 'MKI67 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
MKI67 MUTATED 2 2 2
MKI67 WILD-TYPE 69 41 30
'MKI67 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S1615.  Gene #171: 'MKI67 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
MKI67 MUTATED 3 1 2
MKI67 WILD-TYPE 64 62 14
'MKI67 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S1616.  Gene #171: 'MKI67 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
MKI67 MUTATED 2 2 0 2
MKI67 WILD-TYPE 60 34 28 18
'MKI67 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S1617.  Gene #171: 'MKI67 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
MKI67 MUTATED 3 1 2
MKI67 WILD-TYPE 86 34 20
'MKI67 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1618.  Gene #171: 'MKI67 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
MKI67 MUTATED 3 2 1
MKI67 WILD-TYPE 59 49 30
'MKI67 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S1619.  Gene #171: 'MKI67 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
MKI67 MUTATED 2 2 2
MKI67 WILD-TYPE 73 43 22
'FCGBP MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1620.  Gene #172: 'FCGBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
FCGBP MUTATED 6 5 1
FCGBP WILD-TYPE 60 60 13
'FCGBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S1621.  Gene #172: 'FCGBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
FCGBP MUTATED 4 2 3 3
FCGBP WILD-TYPE 34 27 42 31
'FCGBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S1622.  Gene #172: 'FCGBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
FCGBP MUTATED 4 0 2 1 0
FCGBP WILD-TYPE 30 16 9 10 13
'FCGBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S1623.  Gene #172: 'FCGBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
FCGBP MUTATED 1 0 3 1 0 1 1
FCGBP WILD-TYPE 11 17 18 8 6 13 5
'FCGBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0419 (Fisher's exact test), Q value = 1

Table S1624.  Gene #172: 'FCGBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
FCGBP MUTATED 2 5 5
FCGBP WILD-TYPE 69 38 27

Figure S73.  Get High-res Image Gene #172: 'FCGBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FCGBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S1625.  Gene #172: 'FCGBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
FCGBP MUTATED 6 3 3
FCGBP WILD-TYPE 61 60 13
'FCGBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00345 (Fisher's exact test), Q value = 1

Table S1626.  Gene #172: 'FCGBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
FCGBP MUTATED 2 5 0 5
FCGBP WILD-TYPE 60 31 28 15

Figure S74.  Get High-res Image Gene #172: 'FCGBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FCGBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S1627.  Gene #172: 'FCGBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
FCGBP MUTATED 7 2 3
FCGBP WILD-TYPE 82 33 19
'FCGBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S1628.  Gene #172: 'FCGBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
FCGBP MUTATED 4 4 4
FCGBP WILD-TYPE 58 47 27
'FCGBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S1629.  Gene #172: 'FCGBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
FCGBP MUTATED 5 4 3
FCGBP WILD-TYPE 70 41 21
'SRFBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S1630.  Gene #173: 'SRFBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
SRFBP1 MUTATED 1 2 0
SRFBP1 WILD-TYPE 65 63 14
'SRFBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S1631.  Gene #173: 'SRFBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
SRFBP1 MUTATED 2 0 0 1
SRFBP1 WILD-TYPE 36 29 45 33
'SRFBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S1632.  Gene #173: 'SRFBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
SRFBP1 MUTATED 1 0 1 0 1
SRFBP1 WILD-TYPE 33 16 10 11 12
'SRFBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S1633.  Gene #173: 'SRFBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
SRFBP1 MUTATED 1 0 0 0 0 1 1
SRFBP1 WILD-TYPE 11 17 21 9 6 13 5
'SRFBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1634.  Gene #173: 'SRFBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
SRFBP1 MUTATED 2 1 0
SRFBP1 WILD-TYPE 69 42 32
'SRFBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S1635.  Gene #173: 'SRFBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
SRFBP1 MUTATED 1 2 0
SRFBP1 WILD-TYPE 66 61 16
'SRFBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1636.  Gene #173: 'SRFBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
SRFBP1 MUTATED 2 1 0 0
SRFBP1 WILD-TYPE 60 35 28 20
'SRFBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S1637.  Gene #173: 'SRFBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
SRFBP1 MUTATED 3 0 0
SRFBP1 WILD-TYPE 86 35 22
'SRFBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S1638.  Gene #173: 'SRFBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
SRFBP1 MUTATED 3 0 0
SRFBP1 WILD-TYPE 59 51 31
'SRFBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S1639.  Gene #173: 'SRFBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
SRFBP1 MUTATED 1 2 0
SRFBP1 WILD-TYPE 74 43 24
'NFKBIZ MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1640.  Gene #174: 'NFKBIZ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
NFKBIZ MUTATED 2 2 0
NFKBIZ WILD-TYPE 64 63 14
'NFKBIZ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S1641.  Gene #174: 'NFKBIZ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
NFKBIZ MUTATED 2 0 1 1
NFKBIZ WILD-TYPE 36 29 44 33
'NFKBIZ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S1642.  Gene #174: 'NFKBIZ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
NFKBIZ MUTATED 1 0 1 1 0
NFKBIZ WILD-TYPE 33 16 10 10 13
'NFKBIZ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S1643.  Gene #174: 'NFKBIZ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
NFKBIZ MUTATED 1 0 1 0 0 0 1
NFKBIZ WILD-TYPE 11 17 20 9 6 14 5
'NFKBIZ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S1644.  Gene #174: 'NFKBIZ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
NFKBIZ MUTATED 2 2 0
NFKBIZ WILD-TYPE 69 41 32
'NFKBIZ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S1645.  Gene #174: 'NFKBIZ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
NFKBIZ MUTATED 1 3 0
NFKBIZ WILD-TYPE 66 60 16
'NFKBIZ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1646.  Gene #174: 'NFKBIZ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
NFKBIZ MUTATED 2 1 1 0
NFKBIZ WILD-TYPE 60 35 27 20
'NFKBIZ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S1647.  Gene #174: 'NFKBIZ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
NFKBIZ MUTATED 4 0 0
NFKBIZ WILD-TYPE 85 35 22
'NFKBIZ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S1648.  Gene #174: 'NFKBIZ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
NFKBIZ MUTATED 3 1 0
NFKBIZ WILD-TYPE 59 50 31
'NFKBIZ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1649.  Gene #174: 'NFKBIZ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
NFKBIZ MUTATED 3 1 0
NFKBIZ WILD-TYPE 72 44 24
'NBPF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0767 (Fisher's exact test), Q value = 1

Table S1650.  Gene #175: 'NBPF10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
NBPF10 MUTATED 0 4 1
NBPF10 WILD-TYPE 66 61 13
'NBPF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S1651.  Gene #175: 'NBPF10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
NBPF10 MUTATED 3 0 2 0
NBPF10 WILD-TYPE 35 29 43 34
'NBPF10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0389 (Fisher's exact test), Q value = 1

Table S1652.  Gene #175: 'NBPF10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
NBPF10 MUTATED 0 0 0 2 1
NBPF10 WILD-TYPE 34 16 11 9 12

Figure S75.  Get High-res Image Gene #175: 'NBPF10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NBPF10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1653.  Gene #175: 'NBPF10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
NBPF10 MUTATED 0 1 0 0 1 1 0
NBPF10 WILD-TYPE 12 16 21 9 5 13 6
'NBPF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S1654.  Gene #175: 'NBPF10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
NBPF10 MUTATED 5 0 0
NBPF10 WILD-TYPE 66 43 32
'NBPF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S1655.  Gene #175: 'NBPF10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
NBPF10 MUTATED 1 4 0
NBPF10 WILD-TYPE 66 59 16
'NBPF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S1656.  Gene #175: 'NBPF10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
NBPF10 MUTATED 4 0 1 0
NBPF10 WILD-TYPE 58 36 27 20
'NBPF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S1657.  Gene #175: 'NBPF10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
NBPF10 MUTATED 5 0 0
NBPF10 WILD-TYPE 84 35 22
'NBPF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0375 (Fisher's exact test), Q value = 1

Table S1658.  Gene #175: 'NBPF10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
NBPF10 MUTATED 5 0 0
NBPF10 WILD-TYPE 57 51 31

Figure S76.  Get High-res Image Gene #175: 'NBPF10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NBPF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S1659.  Gene #175: 'NBPF10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
NBPF10 MUTATED 4 1 0
NBPF10 WILD-TYPE 71 44 24
'ZNF358 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S1660.  Gene #176: 'ZNF358 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
ZNF358 MUTATED 3 1 0
ZNF358 WILD-TYPE 63 64 14
'ZNF358 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S1661.  Gene #176: 'ZNF358 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
ZNF358 MUTATED 3 0 0 1
ZNF358 WILD-TYPE 35 29 45 33
'ZNF358 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S1662.  Gene #176: 'ZNF358 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
ZNF358 MUTATED 3 1 0
ZNF358 WILD-TYPE 68 42 32
'ZNF358 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1663.  Gene #176: 'ZNF358 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
ZNF358 MUTATED 2 2 0
ZNF358 WILD-TYPE 65 61 16
'ZNF358 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S1664.  Gene #176: 'ZNF358 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
ZNF358 MUTATED 1 1 2 0
ZNF358 WILD-TYPE 61 35 26 20
'ZNF358 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S1665.  Gene #176: 'ZNF358 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
ZNF358 MUTATED 4 0 0
ZNF358 WILD-TYPE 85 35 22
'ZNF358 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1666.  Gene #176: 'ZNF358 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
ZNF358 MUTATED 2 1 1
ZNF358 WILD-TYPE 60 50 30
'ZNF358 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S1667.  Gene #176: 'ZNF358 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
ZNF358 MUTATED 2 2 0
ZNF358 WILD-TYPE 73 43 24
'HIST1H2BK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S1668.  Gene #177: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
HIST1H2BK MUTATED 1 2 0
HIST1H2BK WILD-TYPE 65 63 14
'HIST1H2BK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S1669.  Gene #177: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
HIST1H2BK MUTATED 2 0 0 1
HIST1H2BK WILD-TYPE 36 29 45 33
'HIST1H2BK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S1670.  Gene #177: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
HIST1H2BK MUTATED 1 1 1
HIST1H2BK WILD-TYPE 70 42 31
'HIST1H2BK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S1671.  Gene #177: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
HIST1H2BK MUTATED 1 1 1
HIST1H2BK WILD-TYPE 66 62 15
'HIST1H2BK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1672.  Gene #177: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
HIST1H2BK MUTATED 1 1 0 1
HIST1H2BK WILD-TYPE 61 35 28 19
'HIST1H2BK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S1673.  Gene #177: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
HIST1H2BK MUTATED 1 1 1
HIST1H2BK WILD-TYPE 88 34 21
'HIST1H2BK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0996 (Fisher's exact test), Q value = 1

Table S1674.  Gene #177: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
HIST1H2BK MUTATED 0 1 2
HIST1H2BK WILD-TYPE 62 50 29
'HIST1H2BK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S1675.  Gene #177: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
HIST1H2BK MUTATED 1 1 1
HIST1H2BK WILD-TYPE 74 44 23
'DDB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S1676.  Gene #178: 'DDB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
DDB1 MUTATED 4 1 0
DDB1 WILD-TYPE 62 64 14
'DDB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 1

Table S1677.  Gene #178: 'DDB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
DDB1 MUTATED 2 0 0 3
DDB1 WILD-TYPE 36 29 45 31
'DDB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S1678.  Gene #178: 'DDB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
DDB1 MUTATED 1 0 1 0 1
DDB1 WILD-TYPE 33 16 10 11 12
'DDB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0553 (Fisher's exact test), Q value = 1

Table S1679.  Gene #178: 'DDB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
DDB1 MUTATED 1 0 0 0 1 0 1
DDB1 WILD-TYPE 11 17 21 9 5 14 5
'DDB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1680.  Gene #178: 'DDB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
DDB1 MUTATED 3 1 1
DDB1 WILD-TYPE 68 42 31
'DDB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S1681.  Gene #178: 'DDB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
DDB1 MUTATED 1 3 1
DDB1 WILD-TYPE 66 60 15
'DDB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S1682.  Gene #178: 'DDB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
DDB1 MUTATED 1 1 3 0
DDB1 WILD-TYPE 61 35 25 20
'DDB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S1683.  Gene #178: 'DDB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
DDB1 MUTATED 4 0 1
DDB1 WILD-TYPE 85 35 21
'DDB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S1684.  Gene #178: 'DDB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
DDB1 MUTATED 3 1 1
DDB1 WILD-TYPE 59 50 30
'DDB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1685.  Gene #178: 'DDB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
DDB1 MUTATED 3 1 1
DDB1 WILD-TYPE 72 44 23
'BVES MUTATION STATUS' versus 'CN_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S1686.  Gene #179: 'BVES MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
BVES MUTATED 2 1 1
BVES WILD-TYPE 64 64 13
'BVES MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S1687.  Gene #179: 'BVES MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
BVES MUTATED 2 1 1 0
BVES WILD-TYPE 36 28 44 34
'BVES MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 1

Table S1688.  Gene #179: 'BVES MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
BVES MUTATED 0 0 1 0 2
BVES WILD-TYPE 34 16 10 11 11
'BVES MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0952 (Fisher's exact test), Q value = 1

Table S1689.  Gene #179: 'BVES MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
BVES MUTATED 0 1 0 0 1 0 1
BVES WILD-TYPE 12 16 21 9 5 14 5
'BVES MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S1690.  Gene #179: 'BVES MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
BVES MUTATED 2 2 0
BVES WILD-TYPE 69 41 32
'BVES MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S1691.  Gene #179: 'BVES MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
BVES MUTATED 3 1 0
BVES WILD-TYPE 64 62 16
'BVES MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S1692.  Gene #179: 'BVES MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
BVES MUTATED 1 2 1 0
BVES WILD-TYPE 61 34 27 20
'BVES MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1693.  Gene #179: 'BVES MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
BVES MUTATED 3 1 0
BVES WILD-TYPE 86 34 22
'BVES MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S1694.  Gene #179: 'BVES MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
BVES MUTATED 3 1 0
BVES WILD-TYPE 59 50 31
'BVES MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S1695.  Gene #179: 'BVES MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
BVES MUTATED 2 2 0
BVES WILD-TYPE 73 43 24
'SLC26A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1696.  Gene #180: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
SLC26A3 MUTATED 2 1 0
SLC26A3 WILD-TYPE 64 64 14
'SLC26A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S1697.  Gene #180: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
SLC26A3 MUTATED 1 1 1 0
SLC26A3 WILD-TYPE 37 28 44 34
'SLC26A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S1698.  Gene #180: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
SLC26A3 MUTATED 0 1 1 0 1
SLC26A3 WILD-TYPE 34 15 10 11 12
'SLC26A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S1699.  Gene #180: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
SLC26A3 MUTATED 0 1 0 0 0 1 1
SLC26A3 WILD-TYPE 12 16 21 9 6 13 5
'SLC26A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S1700.  Gene #180: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
SLC26A3 MUTATED 1 2 0
SLC26A3 WILD-TYPE 70 41 32
'SLC26A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S1701.  Gene #180: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
SLC26A3 MUTATED 3 0 0
SLC26A3 WILD-TYPE 64 63 16
'SLC26A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S1702.  Gene #180: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
SLC26A3 MUTATED 1 2 0 0
SLC26A3 WILD-TYPE 61 34 28 20
'SLC26A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1703.  Gene #180: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
SLC26A3 MUTATED 2 1 0
SLC26A3 WILD-TYPE 87 34 22
'SLC26A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S1704.  Gene #180: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
SLC26A3 MUTATED 2 1 0
SLC26A3 WILD-TYPE 60 50 31
'SLC26A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S1705.  Gene #180: 'SLC26A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
SLC26A3 MUTATED 1 2 0
SLC26A3 WILD-TYPE 74 43 24
'CMYA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S1706.  Gene #181: 'CMYA5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
CMYA5 MUTATED 6 2 0
CMYA5 WILD-TYPE 60 63 14
'CMYA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S1707.  Gene #181: 'CMYA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
CMYA5 MUTATED 2 2 1 3
CMYA5 WILD-TYPE 36 27 44 31
'CMYA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S1708.  Gene #181: 'CMYA5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
CMYA5 MUTATED 1 1 1 1 0
CMYA5 WILD-TYPE 33 15 10 10 13
'CMYA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S1709.  Gene #181: 'CMYA5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
CMYA5 MUTATED 0 1 0 0 0 2 1
CMYA5 WILD-TYPE 12 16 21 9 6 12 5
'CMYA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S1710.  Gene #181: 'CMYA5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
CMYA5 MUTATED 2 4 2
CMYA5 WILD-TYPE 69 39 30
'CMYA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S1711.  Gene #181: 'CMYA5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
CMYA5 MUTATED 5 3 0
CMYA5 WILD-TYPE 62 60 16
'CMYA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S1712.  Gene #181: 'CMYA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
CMYA5 MUTATED 2 3 2 1
CMYA5 WILD-TYPE 60 33 26 19
'CMYA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S1713.  Gene #181: 'CMYA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
CMYA5 MUTATED 5 3 0
CMYA5 WILD-TYPE 84 32 22
'CMYA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S1714.  Gene #181: 'CMYA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
CMYA5 MUTATED 1 5 2
CMYA5 WILD-TYPE 61 46 29
'CMYA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1715.  Gene #181: 'CMYA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
CMYA5 MUTATED 4 3 1
CMYA5 WILD-TYPE 71 42 23
'CHSY3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S1716.  Gene #182: 'CHSY3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
CHSY3 MUTATED 4 1 0
CHSY3 WILD-TYPE 62 64 14
'CHSY3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S1717.  Gene #182: 'CHSY3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
CHSY3 MUTATED 2 1 0 2
CHSY3 WILD-TYPE 36 28 45 32
'CHSY3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0246 (Fisher's exact test), Q value = 1

Table S1718.  Gene #182: 'CHSY3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
CHSY3 MUTATED 0 0 2 1 0
CHSY3 WILD-TYPE 34 16 9 10 13

Figure S77.  Get High-res Image Gene #182: 'CHSY3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CHSY3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S1719.  Gene #182: 'CHSY3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
CHSY3 MUTATED 0 0 0 1 0 1 1
CHSY3 WILD-TYPE 12 17 21 8 6 13 5
'CHSY3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0393 (Fisher's exact test), Q value = 1

Table S1720.  Gene #182: 'CHSY3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
CHSY3 MUTATED 0 3 2
CHSY3 WILD-TYPE 71 40 30

Figure S78.  Get High-res Image Gene #182: 'CHSY3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CHSY3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S1721.  Gene #182: 'CHSY3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
CHSY3 MUTATED 4 0 1
CHSY3 WILD-TYPE 63 63 15
'CHSY3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0749 (Fisher's exact test), Q value = 1

Table S1722.  Gene #182: 'CHSY3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
CHSY3 MUTATED 0 3 1 1
CHSY3 WILD-TYPE 62 33 27 19
'CHSY3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0892 (Fisher's exact test), Q value = 1

Table S1723.  Gene #182: 'CHSY3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
CHSY3 MUTATED 1 3 1
CHSY3 WILD-TYPE 88 32 21
'CHSY3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S1724.  Gene #182: 'CHSY3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
CHSY3 MUTATED 1 3 1
CHSY3 WILD-TYPE 61 48 30
'CHSY3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.025 (Fisher's exact test), Q value = 1

Table S1725.  Gene #182: 'CHSY3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
CHSY3 MUTATED 0 3 2
CHSY3 WILD-TYPE 75 42 22

Figure S79.  Get High-res Image Gene #182: 'CHSY3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'AGAP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S1726.  Gene #183: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
AGAP6 MUTATED 2 4 1
AGAP6 WILD-TYPE 64 61 13
'AGAP6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S1727.  Gene #183: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
AGAP6 MUTATED 3 2 2 0
AGAP6 WILD-TYPE 35 27 43 34
'AGAP6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 1

Table S1728.  Gene #183: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
AGAP6 MUTATED 1 0 3 1 0
AGAP6 WILD-TYPE 33 16 8 10 13

Figure S80.  Get High-res Image Gene #183: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'AGAP6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S1729.  Gene #183: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
AGAP6 MUTATED 0 0 1 2 0 1 1
AGAP6 WILD-TYPE 12 17 20 7 6 13 5
'AGAP6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0589 (Fisher's exact test), Q value = 1

Table S1730.  Gene #183: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
AGAP6 MUTATED 2 5 0
AGAP6 WILD-TYPE 69 38 32
'AGAP6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S1731.  Gene #183: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
AGAP6 MUTATED 6 1 0
AGAP6 WILD-TYPE 61 62 16
'AGAP6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S1732.  Gene #183: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
AGAP6 MUTATED 3 4 0 0
AGAP6 WILD-TYPE 59 32 28 20
'AGAP6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1733.  Gene #183: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
AGAP6 MUTATED 5 2 0
AGAP6 WILD-TYPE 84 33 22
'AGAP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S1734.  Gene #183: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
AGAP6 MUTATED 5 1 1
AGAP6 WILD-TYPE 57 50 30
'AGAP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00819 (Fisher's exact test), Q value = 1

Table S1735.  Gene #183: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
AGAP6 MUTATED 1 6 0
AGAP6 WILD-TYPE 74 39 24

Figure S81.  Get High-res Image Gene #183: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NGF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S1736.  Gene #184: 'NGF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
NGF MUTATED 3 1 0
NGF WILD-TYPE 63 64 14
'NGF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S1737.  Gene #184: 'NGF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
NGF MUTATED 1 0 2 1
NGF WILD-TYPE 37 29 43 33
'NGF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S1738.  Gene #184: 'NGF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
NGF MUTATED 1 2 1 0 0
NGF WILD-TYPE 33 14 10 11 13
'NGF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S1739.  Gene #184: 'NGF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
NGF MUTATED 0 2 1 0 0 0 1
NGF WILD-TYPE 12 15 20 9 6 14 5
'NGF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1740.  Gene #184: 'NGF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
NGF MUTATED 2 1 1
NGF WILD-TYPE 69 42 31
'NGF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S1741.  Gene #184: 'NGF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
NGF MUTATED 1 3 0
NGF WILD-TYPE 66 60 16
'NGF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S1742.  Gene #184: 'NGF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
NGF MUTATED 1 1 1 1
NGF WILD-TYPE 61 35 27 19
'NGF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S1743.  Gene #184: 'NGF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
NGF MUTATED 4 0 0
NGF WILD-TYPE 85 35 22
'NGF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S1744.  Gene #184: 'NGF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
NGF MUTATED 3 0 1
NGF WILD-TYPE 59 51 30
'NGF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1745.  Gene #184: 'NGF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
NGF MUTATED 3 1 0
NGF WILD-TYPE 72 44 24
'SARS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1746.  Gene #185: 'SARS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
SARS2 MUTATED 2 1 0
SARS2 WILD-TYPE 64 64 14
'SARS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S1747.  Gene #185: 'SARS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
SARS2 MUTATED 2 0 1 0
SARS2 WILD-TYPE 36 29 44 34
'SARS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1748.  Gene #185: 'SARS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
SARS2 MUTATED 2 1 0
SARS2 WILD-TYPE 69 42 32
'SARS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1749.  Gene #185: 'SARS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
SARS2 MUTATED 2 1 0
SARS2 WILD-TYPE 65 62 16
'SARS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1750.  Gene #185: 'SARS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
SARS2 MUTATED 2 1 0 0
SARS2 WILD-TYPE 60 35 28 20
'SARS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1751.  Gene #185: 'SARS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
SARS2 MUTATED 2 1 0
SARS2 WILD-TYPE 87 34 22
'SARS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S1752.  Gene #185: 'SARS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
SARS2 MUTATED 3 0 0
SARS2 WILD-TYPE 59 51 31
'SARS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1753.  Gene #185: 'SARS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
SARS2 MUTATED 2 1 0
SARS2 WILD-TYPE 73 44 24
'ADORA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S1754.  Gene #186: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
ADORA3 MUTATED 2 2 1
ADORA3 WILD-TYPE 64 63 13
'ADORA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S1755.  Gene #186: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
ADORA3 MUTATED 2 0 2 1
ADORA3 WILD-TYPE 36 29 43 33
'ADORA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S1756.  Gene #186: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
ADORA3 MUTATED 3 0 2 0 0
ADORA3 WILD-TYPE 31 16 9 11 13
'ADORA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S1757.  Gene #186: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
ADORA3 MUTATED 0 0 3 1 0 0 1
ADORA3 WILD-TYPE 12 17 18 8 6 14 5
'ADORA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S1758.  Gene #186: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
ADORA3 MUTATED 2 3 0
ADORA3 WILD-TYPE 69 40 32
'ADORA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S1759.  Gene #186: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
ADORA3 MUTATED 4 1 0
ADORA3 WILD-TYPE 63 62 16
'ADORA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S1760.  Gene #186: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
ADORA3 MUTATED 3 2 0 0
ADORA3 WILD-TYPE 59 34 28 20
'ADORA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S1761.  Gene #186: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
ADORA3 MUTATED 4 1 0
ADORA3 WILD-TYPE 85 34 22
'ADORA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S1762.  Gene #186: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
ADORA3 MUTATED 3 1 1
ADORA3 WILD-TYPE 59 50 30
'ADORA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S1763.  Gene #186: 'ADORA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
ADORA3 MUTATED 2 3 0
ADORA3 WILD-TYPE 73 42 24
'LUZP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S1764.  Gene #187: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
LUZP1 MUTATED 0 4 0
LUZP1 WILD-TYPE 66 61 14
'LUZP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S1765.  Gene #187: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
LUZP1 MUTATED 3 0 1 0
LUZP1 WILD-TYPE 35 29 44 34
'LUZP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S1766.  Gene #187: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
LUZP1 MUTATED 1 1 1 0 0
LUZP1 WILD-TYPE 33 15 10 11 13
'LUZP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S1767.  Gene #187: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
LUZP1 MUTATED 0 1 0 1 0 0 1
LUZP1 WILD-TYPE 12 16 21 8 6 14 5
'LUZP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S1768.  Gene #187: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
LUZP1 MUTATED 3 1 0
LUZP1 WILD-TYPE 68 42 32
'LUZP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S1769.  Gene #187: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
LUZP1 MUTATED 1 3 0
LUZP1 WILD-TYPE 66 60 16
'LUZP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S1770.  Gene #187: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
LUZP1 MUTATED 3 1 0 0
LUZP1 WILD-TYPE 59 35 28 20
'LUZP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S1771.  Gene #187: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
LUZP1 MUTATED 4 0 0
LUZP1 WILD-TYPE 85 35 22
'LUZP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0777 (Fisher's exact test), Q value = 1

Table S1772.  Gene #187: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
LUZP1 MUTATED 4 0 0
LUZP1 WILD-TYPE 58 51 31
'LUZP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1773.  Gene #187: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
LUZP1 MUTATED 3 1 0
LUZP1 WILD-TYPE 72 44 24
'ATP11B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S1774.  Gene #188: 'ATP11B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
ATP11B MUTATED 2 1 1
ATP11B WILD-TYPE 64 64 13
'ATP11B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S1775.  Gene #188: 'ATP11B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
ATP11B MUTATED 1 0 3 0
ATP11B WILD-TYPE 37 29 42 34
'ATP11B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0366 (Fisher's exact test), Q value = 1

Table S1776.  Gene #188: 'ATP11B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
ATP11B MUTATED 0 2 2 0 0
ATP11B WILD-TYPE 34 14 9 11 13

Figure S82.  Get High-res Image Gene #188: 'ATP11B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ATP11B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S1777.  Gene #188: 'ATP11B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
ATP11B MUTATED 0 2 0 1 0 0 1
ATP11B WILD-TYPE 12 15 21 8 6 14 5
'ATP11B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S1778.  Gene #188: 'ATP11B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
ATP11B MUTATED 3 1 0
ATP11B WILD-TYPE 68 42 32
'ATP11B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S1779.  Gene #188: 'ATP11B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
ATP11B MUTATED 1 3 0
ATP11B WILD-TYPE 66 60 16
'ATP11B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S1780.  Gene #188: 'ATP11B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
ATP11B MUTATED 3 1 0 0
ATP11B WILD-TYPE 59 35 28 20
'ATP11B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S1781.  Gene #188: 'ATP11B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
ATP11B MUTATED 4 0 0
ATP11B WILD-TYPE 85 35 22
'ATP11B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0795 (Fisher's exact test), Q value = 1

Table S1782.  Gene #188: 'ATP11B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
ATP11B MUTATED 4 0 0
ATP11B WILD-TYPE 58 51 31
'ATP11B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1783.  Gene #188: 'ATP11B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
ATP11B MUTATED 3 1 0
ATP11B WILD-TYPE 72 44 24
'RAG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S1784.  Gene #189: 'RAG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
RAG1 MUTATED 1 3 0
RAG1 WILD-TYPE 65 62 14
'RAG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S1785.  Gene #189: 'RAG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
RAG1 MUTATED 3 0 1 0
RAG1 WILD-TYPE 35 29 44 34
'RAG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1786.  Gene #189: 'RAG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
RAG1 MUTATED 2 1 1
RAG1 WILD-TYPE 69 42 31
'RAG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1787.  Gene #189: 'RAG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
RAG1 MUTATED 2 2 0
RAG1 WILD-TYPE 65 61 16
'RAG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S1788.  Gene #189: 'RAG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
RAG1 MUTATED 2 1 0 1
RAG1 WILD-TYPE 60 35 28 19
'RAG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S1789.  Gene #189: 'RAG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
RAG1 MUTATED 4 0 0
RAG1 WILD-TYPE 85 35 22
'RAG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S1790.  Gene #189: 'RAG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
RAG1 MUTATED 3 1 0
RAG1 WILD-TYPE 59 50 31
'RAG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1791.  Gene #189: 'RAG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
RAG1 MUTATED 3 1 0
RAG1 WILD-TYPE 72 44 24
'HK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1792.  Gene #190: 'HK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 65 14
HK2 MUTATED 2 2 0
HK2 WILD-TYPE 64 63 14
'HK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S1793.  Gene #190: 'HK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 38 29 45 34
HK2 MUTATED 1 0 1 2
HK2 WILD-TYPE 37 29 44 32
'HK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1794.  Gene #190: 'HK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 34 16 11 11 13
HK2 MUTATED 1 1 1 0 1
HK2 WILD-TYPE 33 15 10 11 12
'HK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S1795.  Gene #190: 'HK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 12 17 21 9 6 14 6
HK2 MUTATED 0 1 1 0 0 1 1
HK2 WILD-TYPE 12 16 20 9 6 13 5
'HK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S1796.  Gene #190: 'HK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 43 32
HK2 MUTATED 2 2 0
HK2 WILD-TYPE 69 41 32
'HK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1797.  Gene #190: 'HK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 63 16
HK2 MUTATED 2 2 0
HK2 WILD-TYPE 65 61 16
'HK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1798.  Gene #190: 'HK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 62 36 28 20
HK2 MUTATED 2 1 1 0
HK2 WILD-TYPE 60 35 27 20
'HK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S1799.  Gene #190: 'HK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 89 35 22
HK2 MUTATED 4 0 0
HK2 WILD-TYPE 85 35 22
'HK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S1800.  Gene #190: 'HK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 62 51 31
HK2 MUTATED 3 0 1
HK2 WILD-TYPE 59 51 30
'HK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S1801.  Gene #190: 'HK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 75 45 24
HK2 MUTATED 2 2 0
HK2 WILD-TYPE 73 43 24
Methods & Data
Input

  • Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline

  • Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PAAD-TP/15182489/transformed.cor.cli.txt

  • Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PAAD-TP/15107801/PAAD-TP.transferedmergedcluster.txt

  • Number of patients = 146

  • Number of significantly mutated genes = 190

  • Number of Molecular subtypes = 10

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
Copyright © 2015 Broad Institute TCGA GDAC as part of the TCGA Research Network. All rights reserved.
Made with Nozzle