Clinical Features MRNA_CNMF MRNA_CHIERARCHICAL CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q amp_1q21.3 48 (29%) 117 1 1 0.8519 0.968 0.00276 0.0477 0.92568 1 0.52729 0.821 0.22841 0.588 0.421 0.741 0.3989 0.72 0.056229 0.309 0.15127 0.501 0.9304 1 0.39225 0.713 amp_1q32.2 48 (29%) 117 0.82887 0.954 0.93896 1 0.03778 0.243 0.51877 0.816 0.18767 0.553 0.02697 0.204 0.61907 0.874 0.82082 0.954 0.080819 0.376 0.65056 0.887 0.29629 0.649 0.11635 0.447 amp_5q22.3 20 (12%) 145 0.02115 0.174 0.17568 0.538 0.0081399 0.093 0.22242 0.579 0.10599 0.432 0.65859 0.888 0.67525 0.899 0.25235 0.61 0.45229 0.768 0.66089 0.888 1 1 0.2849 0.638 amp_6p21.1 54 (33%) 111 0.058549 0.314 0.10642 0.432 0.00053999 0.0177 0.057159 0.309 0.809 0.948 0.04518 0.281 0.65956 0.888 0.14305 0.491 0.19121 0.553 0.38825 0.713 0.36675 0.703 0.78091 0.934 amp_8p11.23 53 (32%) 112 0.00316 0.0508 0.20572 0.563 9.9999e-06 0.000787 0.26395 0.62 0.37633 0.708 0.13086 0.47 0.13504 0.476 0.072929 0.351 0.04751 0.283 0.02707 0.204 0.97916 1 0.11936 0.454 amp_8p11.21 70 (42%) 95 0.01237 0.125 0.21137 0.569 9.9999e-06 0.000787 0.23304 0.591 0.36932 0.703 0.52174 0.819 0.62752 0.875 0.1246 0.464 0.18361 0.553 0.27415 0.626 0.22485 0.583 0.32073 0.684 amp_8q24.21 109 (66%) 56 0.01661 0.153 0.24271 0.595 9.9999e-06 0.000787 0.12903 0.468 0.63062 0.875 0.88705 0.987 0.22036 0.578 0.0468 0.283 0.53868 0.823 0.26105 0.618 0.075199 0.36 0.44679 0.764 amp_10q22.2 11 (7%) 154 0.50255 0.803 0.92987 1 0.53552 0.822 1 1 1 1 0.97141 1 0.25936 0.616 0.089589 0.4 0.38055 0.711 0.18682 0.553 NA NA NA NA amp_11p15.5 45 (27%) 120 0.3808 0.711 0.094499 0.414 0.080779 0.376 0.6201 0.874 0.72528 0.919 0.58789 0.857 0.28872 0.643 0.00357 0.0562 0.097349 0.416 0.53668 0.822 0.45011 0.768 0.089829 0.4 amp_11q13.3 28 (17%) 137 0.32574 0.686 0.32989 0.689 0.03599 0.234 0.0046 0.0651 0.91032 1 0.7298 0.919 0.00263 0.0477 0.01179 0.121 0.01332 0.132 0.34151 0.701 0.078439 0.371 0.13473 0.476 amp_12p13.33 41 (25%) 124 0.68816 0.908 0.48206 0.796 0.03468 0.234 0.72118 0.918 0.11425 0.444 0.21533 0.575 0.80406 0.947 0.48791 0.796 0.5763 0.853 0.81556 0.951 0.43627 0.755 0.22816 0.588 amp_12p12.1 40 (24%) 125 0.69598 0.908 0.46875 0.788 0.03094 0.222 0.36714 0.703 0.04986 0.287 0.0085999 0.0966 0.18837 0.553 0.36595 0.703 0.69256 0.908 0.76094 0.93 0.43353 0.755 0.14642 0.496 amp_13q12.13 126 (76%) 39 0.41742 0.738 0.17319 0.536 9.9999e-06 0.000787 0.17163 0.535 0.32479 0.686 0.43718 0.755 0.00091999 0.0225 9.9999e-06 0.000787 0.00294 0.0496 0.00416 0.0627 0.93894 1 0.78066 0.934 amp_13q12.2 125 (76%) 40 0.36532 0.703 0.23446 0.591 9.9999e-06 0.000787 0.11688 0.447 0.59141 0.858 0.58651 0.857 0.00059999 0.0185 9.9999e-05 0.00506 0.02162 0.176 0.02182 0.176 0.82751 0.954 0.63509 0.875 amp_13q22.1 120 (73%) 45 0.26658 0.62 0.065809 0.335 9.9999e-06 0.000787 0.03515 0.234 0.90688 0.999 0.26804 0.62 0.00017 0.00708 3e-05 0.00193 0.00448 0.0647 0.0106 0.112 1 1 0.39961 0.72 amp_15q26.1 13 (8%) 152 0.10991 0.436 0.2097 0.569 1 1 0.41764 0.738 0.1555 0.505 0.34643 0.701 0.55992 0.84 0.1608 0.512 0.90634 0.999 1 1 0.74287 0.927 0.64258 0.882 amp_16p11.2 47 (28%) 118 0.12273 0.462 0.57801 0.853 0.00054999 0.0177 0.12844 0.468 0.33962 0.701 0.66628 0.892 0.03959 0.25 0.16059 0.512 0.096939 0.416 0.85167 0.968 0.64485 0.883 0.98745 1 amp_17q12 46 (28%) 119 0.0065899 0.0884 0.12707 0.468 0.00162 0.0348 0.37303 0.704 0.1755 0.538 0.91731 1 0.34596 0.701 0.069539 0.342 0.14646 0.496 0.59865 0.861 0.12052 0.456 0.63789 0.877 amp_17q24.1 39 (24%) 126 0.29082 0.643 0.70776 0.908 0.00090999 0.0225 0.14892 0.497 0.61172 0.872 0.7479 0.927 0.23171 0.591 0.10056 0.42 0.61031 0.872 0.20621 0.563 0.49534 0.799 0.93964 1 amp_19p13.2 36 (22%) 129 0.01956 0.171 0.25164 0.61 0.00124 0.0293 0.53106 0.821 0.54468 0.825 0.085319 0.39 0.03133 0.222 0.03609 0.234 0.58774 0.857 0.70001 0.908 0.86873 0.972 0.86862 0.972 amp_20q11.21 146 (88%) 19 0.0078999 0.0917 0.16166 0.512 0.00073999 0.0202 0.02027 0.171 0.19414 0.554 0.37035 0.703 0.097629 0.416 0.00029 0.0108 0.0073199 0.0894 0.39702 0.719 0.49916 0.803 0.59132 0.858 amp_20q11.23 147 (89%) 18 0.0076599 0.0917 0.16031 0.512 0.00141 0.0322 0.04764 0.283 0.19417 0.554 0.36884 0.703 0.16188 0.512 0.00015 0.00664 0.01364 0.132 0.27845 0.628 0.36227 0.703 1 1 amp_20q13.31 148 (90%) 17 0.00473 0.0657 0.10699 0.432 0.00245 0.0469 0.04703 0.283 0.19475 0.554 0.36983 0.703 0.17345 0.536 5.9999e-05 0.00354 0.02212 0.176 0.3884 0.713 0.36002 0.703 1 1 amp_xp22.2 32 (19%) 133 0.051389 0.293 0.22095 0.578 0.59797 0.861 0.27309 0.626 0.95913 1 0.23467 0.591 0.54899 0.829 0.62924 0.875 0.813 0.951 0.8689 0.972 0.18428 0.553 0.9483 1 del_1p36.11 75 (45%) 90 0.11404 0.444 0.064079 0.332 0.19652 0.554 0.14343 0.491 0.70599 0.908 0.92073 1 0.20687 0.563 0.01365 0.132 0.49342 0.799 0.064679 0.332 0.35264 0.703 0.79612 0.943 del_1p33 53 (32%) 112 0.36211 0.703 0.00428 0.0631 0.0173 0.157 0.13782 0.481 0.8003 0.944 0.31046 0.67 0.31021 0.67 0.18751 0.553 0.44483 0.764 0.26764 0.62 0.5609 0.84 0.56935 0.848 del_1p13.2 54 (33%) 111 0.47582 0.794 0.02364 0.186 0.0027 0.0477 0.57791 0.853 0.54377 0.825 0.57332 0.851 0.4765 0.794 0.01915 0.169 0.50326 0.803 0.2113 0.569 0.64785 0.885 0.61218 0.872 del_2p12 13 (8%) 152 0.39173 0.713 0.83701 0.959 9.9999e-06 0.000787 1 1 0.34285 0.701 0.14846 0.497 0.82581 0.954 0.13962 0.485 0.15186 0.501 0.14357 0.491 NA NA NA NA del_3p14.2 31 (19%) 134 0.79944 0.944 0.69707 0.908 0.77768 0.934 1 1 0.22024 0.578 0.7174 0.915 0.50412 0.803 0.86094 0.972 0.80878 0.948 0.96115 1 0.2591 0.616 0.25015 0.61 del_3q26.31 18 (11%) 147 1 1 0.86855 0.972 0.1527 0.501 0.47761 0.794 0.44593 0.764 0.23992 0.592 0.31382 0.675 0.41569 0.738 0.26548 0.62 0.056819 0.309 0.78533 0.934 0.36759 0.703 del_4p13 60 (36%) 105 0.78036 0.934 0.0386 0.246 0.00068999 0.0202 0.068669 0.34 0.83813 0.959 0.50585 0.803 0.67209 0.898 0.34663 0.701 0.97885 1 0.22001 0.578 0.16516 0.517 0.50217 0.803 del_4q22.1 73 (44%) 92 0.61727 0.874 0.02396 0.186 0.00041 0.0145 0.2321 0.591 0.70322 0.908 0.47759 0.794 0.39294 0.713 0.31789 0.68 0.98645 1 0.25525 0.614 0.6134 0.872 0.70386 0.908 del_4q35.1 72 (44%) 93 0.61003 0.872 0.064279 0.332 0.00181 0.0366 0.10746 0.432 0.38656 0.713 0.65472 0.888 0.54548 0.825 0.04959 0.287 0.48676 0.796 0.04932 0.287 0.5513 0.83 0.85152 0.968 del_5q12.1 53 (32%) 112 0.066459 0.336 0.00187 0.0368 0.20664 0.563 0.00391 0.0602 0.78214 0.934 0.27804 0.628 0.68635 0.908 0.094839 0.414 0.53563 0.822 0.28982 0.643 0.02661 0.204 0.23693 0.591 del_5q22.2 59 (36%) 106 0.18475 0.553 0.00088999 0.0225 0.17633 0.538 0.18765 0.553 0.54436 0.825 0.72822 0.919 0.622 0.874 0.18944 0.553 0.73834 0.925 0.23832 0.591 0.02059 0.172 0.19807 0.554 del_6p25.3 24 (15%) 141 1 1 0.9384 1 0.80745 0.948 0.02013 0.171 0.65421 0.888 0.98466 1 0.92425 1 0.69624 0.908 0.7522 0.929 0.78603 0.934 0.57039 0.848 0.75847 0.93 del_6q26 30 (18%) 135 0.15685 0.507 0.7462 0.927 0.01419 0.136 0.6349 0.875 0.099079 0.42 0.20024 0.556 0.39245 0.713 0.32222 0.684 0.055329 0.308 0.33366 0.693 0.078519 0.371 0.94992 1 del_7q31.1 4 (2%) 161 NA NA NA NA 0.10616 0.432 NA NA 1 1 0.95171 1 0.16387 0.516 0.77003 0.934 1 1 1 1 NA NA NA NA del_8p23.2 100 (61%) 65 0.1108 0.436 0.090029 0.4 0.00015 0.00664 0.45662 0.772 1 1 0.26869 0.62 0.0070699 0.0894 0.0099199 0.108 0.78028 0.934 0.32648 0.686 0.55822 0.839 0.50493 0.803 del_8p11.21 45 (27%) 120 0.74464 0.927 0.47 0.789 0.0096599 0.107 0.23588 0.591 0.070089 0.342 0.36781 0.703 0.01058 0.112 0.04855 0.286 0.059679 0.318 0.0078299 0.0917 0.34057 0.701 0.7393 0.925 del_10q21.1 41 (25%) 124 0.28019 0.63 0.71156 0.909 0.25696 0.615 0.49143 0.799 0.01863 0.167 0.068079 0.339 0.31037 0.67 0.53922 0.823 0.85972 0.972 0.19083 0.553 0.96464 1 0.39026 0.713 del_10q25.2 48 (29%) 117 0.75885 0.93 0.77115 0.934 0.73629 0.925 0.48567 0.796 0.45325 0.768 0.24306 0.595 0.13797 0.481 0.03192 0.224 0.62078 0.874 0.27617 0.627 0.44446 0.764 0.30048 0.655 del_11q22.3 38 (23%) 127 0.03361 0.231 0.03005 0.219 0.00269 0.0477 0.03568 0.234 0.69029 0.908 0.13403 0.476 0.0067399 0.0884 0.0073199 0.0894 0.45194 0.768 0.96646 1 0.41455 0.738 0.6641 0.891 del_12p13.1 33 (20%) 132 1 1 0.26307 0.62 0.59952 0.861 0.19904 0.555 0.53537 0.822 0.27525 0.627 0.61728 0.874 0.12836 0.468 0.29417 0.647 0.52574 0.821 0.81663 0.951 0.83179 0.954 del_12q22 26 (16%) 139 0.35393 0.703 0.4786 0.794 0.03426 0.233 0.77428 0.934 0.82187 0.954 0.5132 0.813 0.65746 0.888 0.75627 0.93 0.51452 0.813 0.70704 0.908 0.49528 0.799 0.38729 0.713 del_14q11.2 70 (42%) 95 0.48107 0.796 0.13086 0.47 0.00021 0.00826 0.93186 1 0.70549 0.908 0.6915 0.908 0.43591 0.755 0.10021 0.42 0.108 0.432 0.34396 0.701 0.74873 0.927 0.78256 0.934 del_14q31.1 72 (44%) 93 0.48561 0.796 0.23864 0.591 0.053919 0.303 0.96574 1 0.70731 0.908 0.19809 0.554 0.23276 0.591 0.096399 0.416 0.1975 0.554 0.23607 0.591 0.38929 0.713 0.65642 0.888 del_15q21.1 79 (48%) 86 0.57018 0.848 0.11079 0.436 0.00071999 0.0202 0.78849 0.935 0.03279 0.228 0.32291 0.684 0.67862 0.9 0.41468 0.738 0.81357 0.951 0.43512 0.755 0.42401 0.745 0.58413 0.857 del_15q22.33 77 (47%) 88 0.62434 0.875 0.15433 0.504 6.9999e-05 0.00381 0.59754 0.861 0.14762 0.497 0.056709 0.309 0.37279 0.704 0.10133 0.42 0.41823 0.738 0.74376 0.927 0.85785 0.972 0.52608 0.821 del_16p13.3 13 (8%) 152 0.88834 0.987 0.67797 0.9 0.20377 0.563 0.02032 0.171 0.72523 0.919 0.59849 0.861 0.19077 0.553 0.96215 1 0.35644 0.703 0.63361 0.875 0.25077 0.61 0.488 0.796 del_16q23.1 23 (14%) 142 0.15289 0.501 0.35059 0.703 0.00305 0.0502 0.12636 0.468 0.58828 0.857 0.95209 1 0.36262 0.703 0.7384 0.925 0.75866 0.93 0.84096 0.96 0.89021 0.988 0.86683 0.972 del_17p11.2 113 (68%) 52 0.083839 0.388 0.75736 0.93 0.071489 0.347 0.28976 0.643 0.83136 0.954 0.36019 0.703 0.62672 0.875 0.22111 0.578 0.93494 1 0.35066 0.703 0.63554 0.875 0.70353 0.908 del_18q21.2 145 (88%) 20 0.13278 0.475 0.33356 0.693 2e-05 0.00142 0.04642 0.283 1 1 0.76831 0.934 0.03127 0.222 0.02836 0.211 0.40181 0.722 0.12447 0.464 0.89945 0.995 0.86759 0.972 del_18q22.1 141 (85%) 24 0.067169 0.337 0.089799 0.4 9.9999e-06 0.000787 0.0291 0.215 0.77932 0.934 0.6543 0.888 0.090349 0.4 0.01159 0.121 0.82808 0.954 0.29929 0.654 0.7862 0.934 1 1 del_19p13.3 37 (22%) 128 0.19752 0.554 0.88511 0.987 0.67424 0.899 0.04117 0.258 0.96194 1 0.8287 0.954 0.77314 0.934 0.93171 1 0.35648 0.703 0.00176 0.0366 0.53043 0.821 0.32858 0.688 del_20p12.1 49 (30%) 116 0.94166 1 0.33615 0.696 0.01558 0.145 0.49389 0.799 0.26459 0.62 0.38259 0.713 0.52794 0.821 0.3768 0.708 0.357 0.703 0.25599 0.614 0.43618 0.755 0.43654 0.755 del_21q11.2 73 (44%) 92 0.3159 0.678 0.060199 0.318 0.085249 0.39 0.87225 0.974 0.92238 1 0.21343 0.572 0.51728 0.816 0.70989 0.909 0.064149 0.332 0.7286 0.919 0.21879 0.578 0.19043 0.553 del_22q13.31 68 (41%) 97 0.90704 0.999 0.29374 0.647 0.0068899 0.0887 0.86935 0.972 0.40399 0.724 0.35383 0.703 0.45854 0.773 0.27294 0.626 0.0066199 0.0884 0.11557 0.447 0.10099 0.42 0.01457 0.138 del_xp22.33 34 (21%) 131 0.77824 0.934 0.91724 1 0.052809 0.299 0.00155 0.0343 0.72462 0.919 0.89785 0.995 0.97192 1 0.53027 0.821 0.69443 0.908 1 1 0.62665 0.875 0.5871 0.857